BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037592
         (337 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/337 (73%), Positives = 282/337 (83%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RLKQGKEVHAKVIT G CGNVVVESSLVDMYGKCG V ES R+FD+M  KNSVS SALL 
Sbjct: 337 RLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLG 396

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           GYCQ GDF+SVI+IFR+ME++DL+ FG +LR CAGLAA+R GKEVHCQYIR+ G +DVI+
Sbjct: 397 GYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIV 456

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           ESALVDLYAKCGC+++A  IF QMPVRNLITWNSMI GFAQNGRGEEALRIF+ M + G 
Sbjct: 457 ESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGI 516

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD++SFIG+L ACSH GL+D GR++F SMTK+Y IK  IEHY+CMVDLLGRAGLLEEAE
Sbjct: 517 KPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAE 576

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LIE +D R DSSLW  LLGACTT  N  +AER+AK++MEL+PD HLSYVLL NVY+AVG
Sbjct: 577 ILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVG 636

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDLD 337
           RWNDA +IR LMK  GV KMPGKSWIE  + L    D
Sbjct: 637 RWNDALRIRRLMKDRGVNKMPGKSWIETKNNLGSSFD 673



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 165/296 (55%), Gaps = 14/296 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G+  H  V+  G   N V+ S+L+DM+G+   +D++ ++FD++L+ +++  ++++  
Sbjct: 236 LKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISA 295

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
             +   F+  +R F  M+       D F+FG VL AC  L  L+ GKEVH + I    C 
Sbjct: 296 LTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCG 355

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V++ES+LVD+Y KCG V  + +IF +MP++N ++W++++ G+ QNG  +  ++IF  M 
Sbjct: 356 NVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKM- 414

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               K D   F  +L  C+ +  + +G++      ++   +  I   + +VDL  + G +
Sbjct: 415 ---EKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVE-SALVDLYAKCGCI 470

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
           E A+T+ +    R+  + W  ++G          A R+  ++++  +KPD ++S++
Sbjct: 471 EYAQTIFDQMPVRNLIT-WNSMIGGFAQNGRGEEALRIFNQMVKEGIKPD-YISFI 524



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 144/267 (53%), Gaps = 10/267 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQ 60
              G ++HA VI  GL  +  V +SL+ +Y K G    E+ +VFD +  K+ +S ++++ 
Sbjct: 134 FNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMIS 193

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY + G   + + +F +M     E + F+   V++AC+ L  L+LG+  H   + R    
Sbjct: 194 GYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDS 253

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + +I SAL+D++ +   +D A Q+F ++   + I W S+IS   +N   +EALR F  M 
Sbjct: 254 NYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQ 313

Query: 177 -EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
            + G  PD  +F  VL+AC ++G + +G++ H   +T  +     +E  + +VD+ G+ G
Sbjct: 314 RDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVE--SSLVDMYGKCG 371

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
            + E++ + +    ++  S W  LLG 
Sbjct: 372 SVGESQRIFDRMPIKNSVS-WSALLGG 397


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/337 (73%), Positives = 282/337 (83%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RLKQGKEVHAKVIT G CGNVVVESSLVDMYGKCG V ES R+FD+M  KNSVS SALL 
Sbjct: 278 RLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLG 337

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           GYCQ GDF+SVI+IFR+ME++DL+ FG +LR CAGLAA+R GKEVHCQYIR+ G +DVI+
Sbjct: 338 GYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIV 397

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           ESALVDLYAKCGC+++A  IF QMPVRNLITWNSMI GFAQNGRGEEALRIF+ M + G 
Sbjct: 398 ESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGI 457

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD++SFIG+L ACSH GL+D GR++F SMTK+Y IK  IEHY+CMVDLLGRAGLLEEAE
Sbjct: 458 KPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAE 517

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LIE +D R DSSLW  LLGACTT  N  +AER+AK++MEL+PD HLSYVLL NVY+AVG
Sbjct: 518 ILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVG 577

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDLD 337
           RWNDA +IR LMK  GV KMPGKSWIE  + L    D
Sbjct: 578 RWNDALRIRRLMKDRGVNKMPGKSWIETKNNLGSSFD 614



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 165/296 (55%), Gaps = 14/296 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G+  H  V+  G   N V+ S+L+DM+G+   +D++ ++FD++L+ +++  ++++  
Sbjct: 177 LKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISA 236

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
             +   F+  +R F  M+       D F+FG VL AC  L  L+ GKEVH + I    C 
Sbjct: 237 LTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCG 296

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V++ES+LVD+Y KCG V  + +IF +MP++N ++W++++ G+ QNG  +  ++IF  M 
Sbjct: 297 NVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKM- 355

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               K D   F  +L  C+ +  + +G++      ++   +  I   + +VDL  + G +
Sbjct: 356 ---EKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVE-SALVDLYAKCGCI 411

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
           E A+T+ +    R+  + W  ++G          A R+  ++++  +KPD ++S++
Sbjct: 412 EYAQTIFDQMPVRNLIT-WNSMIGGFAQNGRGEEALRIFNQMVKEGIKPD-YISFI 465



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 144/267 (53%), Gaps = 10/267 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQ 60
              G ++HA VI  GL  +  V +SL+ +Y K G    E+ +VFD +  K+ +S ++++ 
Sbjct: 75  FNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMIS 134

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY + G   + + +F +M     E + F+   V++AC+ L  L+LG+  H   + R    
Sbjct: 135 GYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDS 194

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + +I SAL+D++ +   +D A Q+F ++   + I W S+IS   +N   +EALR F  M 
Sbjct: 195 NYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQ 254

Query: 177 -EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
            + G  PD  +F  VL+AC ++G + +G++ H   +T  +     +E  + +VD+ G+ G
Sbjct: 255 RDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVE--SSLVDMYGKCG 312

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
            + E++ + +    ++  S W  LLG 
Sbjct: 313 SVGESQRIFDRMPIKNSVS-WSALLGG 338


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/328 (71%), Positives = 273/328 (83%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RLKQGKEVHAKVIT GL GNV VESSLVDMYGKC LV++S  VFD+M  KN VS +ALL 
Sbjct: 279 RLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLG 338

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           GYCQ GDFESVIRIFRE +++D +SFG VLRACAGLAA+R GKEVHCQY++R   +DV+ 
Sbjct: 339 GYCQNGDFESVIRIFREGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVT 398

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           ESALVDLYAKCGC+DFA++IF++M VRNLITWNSMI GFAQNGRG E  ++FD+M E G 
Sbjct: 399 ESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGI 458

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD++SF+GVL ACSH GL+D+G+K+FA+MT+ Y IKP IEHYNCM+DLLGRAGLLEEAE
Sbjct: 459 RPDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAE 518

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LIENA+CR + SLW VLLGAC    ++  AER+AKK +ELKPD HLSYV L NVYRAVG
Sbjct: 519 NLIENANCRDEPSLWTVLLGACAASPHSATAERIAKKAVELKPDHHLSYVYLANVYRAVG 578

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
           RW+DA KIR LM   GV KMPG SWIE 
Sbjct: 579 RWDDAVKIRNLMTKRGVGKMPGTSWIET 606



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 154/295 (52%), Gaps = 12/295 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK  H  V+  G   N V+ ++L+DMYG+   VD++  VF ++ + +++  ++++  
Sbjct: 178 LRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISA 237

Query: 62  YCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           + +   ++  +  F  M        D F+FG VL AC  L  L+ GKEVH + I      
Sbjct: 238 FTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSG 297

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V +ES+LVD+Y KC  V+ +  +F +M V+NL++W +++ G+ QNG  E  +RIF +  
Sbjct: 298 NVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFRE-- 355

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G K D  SF  VL AC+ +  + +G++      K    +  +   + +VDL  + G +
Sbjct: 356 --GKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTE-SALVDLYAKCGCI 412

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSYV 290
           + A  +      R+  +   ++ G     R   V +   + I E ++PD ++S+V
Sbjct: 413 DFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPD-YISFV 466



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 143/267 (53%), Gaps = 10/267 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQ 60
              G + H+  I  GL  +  V +SL+ +Y K G  + E+ RVFD +  K+ +S ++++ 
Sbjct: 76  FTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMIT 135

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY +    +  + +F EM     E + F+   V++AC+GL  LRLGK  H   + R    
Sbjct: 136 GYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDL 195

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + +I +AL+D+Y +   VD A  +F+++P  + I W S+IS F +N   ++AL  F  M 
Sbjct: 196 NDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMC 255

Query: 177 -EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
            + G  PD  +F  VL+AC ++G + +G++ H   +T        +E  + +VD+ G+  
Sbjct: 256 RKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVE--SSLVDMYGKCR 313

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
           L+ +++ + +    ++  S W  LLG 
Sbjct: 314 LVNQSQCVFDRMSVKNLVS-WTALLGG 339


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/327 (67%), Positives = 269/327 (82%), Gaps = 1/327 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RL+QG+E+HAKVI  G  GNVV ESSLVDMYGKCG V++S R+FD+M  +NSVS SALL 
Sbjct: 279 RLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLA 338

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            YC  GD+E  + +FREM+E+DL+SFG V+RACAGLAA+  GKE+HCQYIR+ G +DVI+
Sbjct: 339 VYCHNGDYEKAVNLFREMKEVDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIV 398

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           ESALVDLYAKCGC++FA+++F +MP RNLITWNSMI GFAQNG    A++IF+ M + G 
Sbjct: 399 ESALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGI 458

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD +SFIG+L ACSH GL+D+ R +F  MT +Y IKP +EHYNCMVDLLGRAGLLEEAE
Sbjct: 459 KPDCISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHYNCMVDLLGRAGLLEEAE 518

Query: 241 TLIENADCRHDSSLWEVLLGACTTF-RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
            LIENA+CR+DSSLW VLLGACTT   N+  AER+AKK+MEL+P C+LSYV L NVYRAV
Sbjct: 519 NLIENAECRNDSSLWLVLLGACTTTCTNSATAERIAKKLMELEPQCYLSYVHLANVYRAV 578

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           GRW+DA K+R LMK   +KKMPG+SW+
Sbjct: 579 GRWDDAVKVRELMKNRQLKKMPGQSWM 605



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 152/288 (52%), Gaps = 13/288 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK  H  V+  G   N V+ SSL+DMYG+  +  ++ ++FD++L+ + V  + ++  + +
Sbjct: 181 GKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTR 240

Query: 65  TGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              +E  +  F           D ++FG VL AC  L  LR G+E+H + I      +V+
Sbjct: 241 NDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVV 300

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
            ES+LVD+Y KCG V+ + ++F +M  RN ++W+++++ +  NG  E+A+ +F +M E  
Sbjct: 301 TESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKE-- 358

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
              D  SF  V+ AC+ +  +  G++      ++   +  I   + +VDL  + G +  A
Sbjct: 359 --VDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVE-SALVDLYAKCGCINFA 415

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDC 285
             + +    R+  + W  ++       ++ +A ++ + +++  +KPDC
Sbjct: 416 YRVFDRMPTRNLIT-WNSMIHGFAQNGSSGIAIQIFEAMIKEGIKPDC 462



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 137/266 (51%), Gaps = 10/266 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDE--SHRVFDKMLKKNSVSSSALL 59
             +G++ HA V+  GL  +  V +SL+ +Y K G  D   + RVFD +  K+ VS ++++
Sbjct: 76  FTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLG-SDSLLTRRVFDGLFVKDVVSWASMI 134

Query: 60  QGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY + G     I +F +M     E + F+   V++AC+ +  L LGK  H   +RR   
Sbjct: 135 TGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFD 194

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            + +I S+L+D+Y +      A Q+F ++   + + W ++IS F +N   EEAL  F   
Sbjct: 195 SNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLK 254

Query: 176 TEGGTK-PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
                  PD+ +F  VL+AC ++G + +G +  A +   Y     +   + +VD+ G+ G
Sbjct: 255 HRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIA-YGFSGNVVTESSLVDMYGKCG 313

Query: 235 LLEEAETLIENADCRHDSSLWEVLLG 260
            +E+++ L +    R+  S W  LL 
Sbjct: 314 AVEKSQRLFDRMSNRNSVS-WSALLA 338


>gi|357450533|ref|XP_003595543.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484591|gb|AES65794.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 958

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/331 (63%), Positives = 263/331 (79%), Gaps = 2/331 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQ 60
           L+QGKEVH KV+ LG  GNVVVESSL+DMYGKCG V  S  VF+++  +KN+VS +A+L 
Sbjct: 606 LRQGKEVHGKVVGLGFGGNVVVESSLLDMYGKCGCVRHSRIVFERLSDEKNNVSWTAMLG 665

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            YCQ  ++++V+ + RE  +++ ++FGIVLRAC+GLAA+  GKEVHC Y+R+ G KDVII
Sbjct: 666 VYCQNKEYQNVLDLVRERGDLNFYAFGIVLRACSGLAAVNHGKEVHCMYVRKGGSKDVII 725

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           ESALVDLYAKCG VDFA  +F  M VRNLITWNSM+SGFAQNGRG EAL +F+DM + G 
Sbjct: 726 ESALVDLYAKCGMVDFACTMFASMEVRNLITWNSMVSGFAQNGRGVEALALFEDMIKEGI 785

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD ++F+ VL ACSH GL+D GRK F  M  EY IKP +EHYNCM+DLLGRAG ++EAE
Sbjct: 786 KPDSITFVAVLFACSHAGLVDEGRKVFTLMG-EYGIKPVVEHYNCMIDLLGRAGFIDEAE 844

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            L+ENADCR+D SLW  LLGACT   +   AERVA+K++EL+PD HLSYVLL+N+YR VG
Sbjct: 845 CLLENADCRYDKSLWAALLGACTKCSDYRTAERVARKMIELEPDFHLSYVLLNNIYREVG 904

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           RW+DA +IR LM+  GVKKM GKSWI++ ++
Sbjct: 905 RWDDALEIRKLMEDRGVKKMAGKSWIDSQNR 935



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 165/320 (51%), Gaps = 14/320 (4%)

Query: 9   HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SALLQGYCQTGD 67
           H+ V+T G   N VV  SL+DMYG    VD++ RVFD++  K+ V   ++++  + +   
Sbjct: 510 HSMVLTRGFDWNTVVSCSLIDMYGWNRAVDDARRVFDELFVKDDVFCWTSIISCFTRNDM 569

Query: 68  FESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
           F+  ++ F  M  +     D ++FG +L ACA L  LR GKEVH + +      +V++ES
Sbjct: 570 FKESLKFFYVMNRVRGVVPDGYTFGTILTACANLGLLRQGKEVHGKVVGLGFGGNVVVES 629

Query: 123 ALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +L+D+Y KCGCV  +  +F ++   +N ++W +M+  + QN   +E   + D + E G  
Sbjct: 630 SLLDMYGKCGCVRHSRIVFERLSDEKNNVSWTAMLGVYCQN---KEYQNVLDLVRERGDL 686

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            +  +F  VL ACS +  ++ G++      ++   K  I   + +VDL  + G+++ A T
Sbjct: 687 -NFYAFGIVLRACSGLAAVNHGKEVHCMYVRKGGSKDVIIE-SALVDLYAKCGMVDFACT 744

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSYVLLDNVYRAVG 300
           +  + + R+  +   ++ G     R           I E +KPD  +++V +       G
Sbjct: 745 MFASMEVRNLITWNSMVSGFAQNGRGVEALALFEDMIKEGIKPD-SITFVAVLFACSHAG 803

Query: 301 RWNDAFKIRTLMKYSGVKKM 320
             ++  K+ TLM   G+K +
Sbjct: 804 LVDEGRKVFTLMGEYGIKPV 823


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/330 (61%), Positives = 256/330 (77%), Gaps = 1/330 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RLKQGKE+H K+IT G+  NVVVESSL+DMYGKCG V E+ +VF+ M KKNSVS SALL 
Sbjct: 280 RLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLG 339

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           GYCQ G+ E  I IFREMEE DL+ FG VL+ACAGLAA+RLGKE+H QY+RR    +VI+
Sbjct: 340 GYCQNGEHEKAIEIFREMEEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIV 399

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           ESAL+DLY K GC+D A +++ +M +RN+ITWN+M+S  AQNGRGEEA+  F+DM + G 
Sbjct: 400 ESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGI 459

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD++SFI +L+AC H G++D GR +F  M K Y IKP  EHY+CM+DLLGRAGL EEAE
Sbjct: 460 KPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAE 519

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNA-HVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
            L+E A+CR+D+SLW VLLG C    +A  VAER+AK++MEL+P  H+SYVLL N+Y+A+
Sbjct: 520 NLLERAECRNDASLWGVLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSNMYKAI 579

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           GR  DA  IR LM   GV K  G+SWI+A+
Sbjct: 580 GRHGDALNIRKLMVRRGVAKTVGQSWIDAH 609



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 161/329 (48%), Gaps = 17/329 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+  H  VIT G   N  + S+L  +YG      ++ RVFD+M + + +  +A+L  
Sbjct: 179 VRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSA 238

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           + +   +E  + +F  M        D  +FG VL AC  L  L+ GKE+H + I      
Sbjct: 239 FSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGS 298

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V++ES+L+D+Y KCG V  A Q+F  M  +N ++W++++ G+ QNG  E+A+ IF +M 
Sbjct: 299 NVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREME 358

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E     D   F  VL AC+ +  +  G++      +       I   + ++DL G++G +
Sbjct: 359 E----KDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVE-SALIDLYGKSGCI 413

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDN 294
           + A  +      R+  + W  +L A         A      +++  +KPD ++S++ +  
Sbjct: 414 DSASRVYSKMSIRNMIT-WNAMLSALAQNGRGEEAVSFFNDMVKKGIKPD-YISFIAILT 471

Query: 295 VYRAVGRWNDAFKIRTLMKYS-GVKKMPG 322
                G  ++      LM  S G+K  PG
Sbjct: 472 ACGHTGMVDEGRNYFVLMAKSYGIK--PG 498



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 131/264 (49%), Gaps = 8/264 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQGY 62
            G + HA V+  GL  +  V +SL+ +Y K G  + E+ RVFD    K+++S ++++ GY
Sbjct: 79  HGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGY 138

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
               +    + +F EM    L    F+    ++AC+ L  +RLG+  H   I      + 
Sbjct: 139 VTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNH 198

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            I S L  LY        A ++F +MP  ++I W +++S F++N   EEAL +F  M  G
Sbjct: 199 FISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRG 258

Query: 179 -GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD  +F  VL+AC ++  + +G++    +     I   +   + ++D+ G+ G + 
Sbjct: 259 KGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN-GIGSNVVVESSLLDMYGKCGSVR 317

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           EA  +  N   + +S  W  LLG 
Sbjct: 318 EARQVF-NGMSKKNSVSWSALLGG 340



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 125/320 (39%), Gaps = 52/320 (16%)

Query: 52  SVSSSALLQG-----YCQTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLG 102
           S+SSSA  +       C+ G     IRI       ++ +    +  +L+ C  + +   G
Sbjct: 21  SISSSAPTKQSRILELCKLGQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHG 80

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGC-VDFAHQIFLQMPVRNLITWNSMISGFAQ 161
            + H   ++     D  + ++L+ LY K G  +    ++F    V++ I+W SM+SG+  
Sbjct: 81  IQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVT 140

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-------------KHFA 208
                +AL +F +M   G   +  +    + ACS +G +  GR              HF 
Sbjct: 141 GKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFI 200

Query: 209 SMTKEY------------RI-----KPKIEHYNCMVDLLGRAGLLEEAETLI----ENAD 247
           S T  Y            R+     +P +  +  ++    +  L EEA  L         
Sbjct: 201 SSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKG 260

Query: 248 CRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDA 305
              D S +  +L AC   R     + +  K++   +  +  +   LLD +Y   G   +A
Sbjct: 261 LVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLD-MYGKCGSVREA 319

Query: 306 FKIRTLMKYSGVKKMPGKSW 325
            ++     ++G+ K    SW
Sbjct: 320 RQV-----FNGMSKKNSVSW 334


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/330 (60%), Positives = 257/330 (77%), Gaps = 1/330 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RLKQGKE+H K+IT G+  NVVVESSL+DMYGK G V E+ +VF+ M +KN VS SALL 
Sbjct: 279 RLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLG 338

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           GYCQ G+ E  I +FREMEE DL+ FG VL+ACAGLAA+RLGKE+H QY+RR    +VI+
Sbjct: 339 GYCQNGEHEKAIEMFREMEEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIV 398

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           ESAL+DLY K GC+D+A +++ +M VRN+ITWN+M+S  AQNGRGEEA+  F+DM + G 
Sbjct: 399 ESALIDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGI 458

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD++SFI VL+AC H GL++ GR +FA M K Y IKP  EHY+CM+DLLGRAGL EEAE
Sbjct: 459 KPDYISFIAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAE 518

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNA-HVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
            L++ A+CR+D+SLW VLLG C    +A  +AER+AK++MEL+P  H+SYVLL N+Y+A+
Sbjct: 519 NLLDRAECRNDASLWGVLLGPCAANTDASSIAERIAKRMMELEPKYHMSYVLLSNMYKAI 578

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           GR  DA KIR LM   GV K  G+SWI+A+
Sbjct: 579 GRHGDALKIRKLMVRRGVAKTVGQSWIDAH 608



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 138/265 (52%), Gaps = 11/265 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+  H  VIT G   N V+ S+L  MYG      ++ RVFD+M + + +  +A+L  
Sbjct: 178 VRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDVICWTAVLSA 237

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           + +   +E  + +F  M        D  +FG VL AC  L  L+ GKE+H + I      
Sbjct: 238 FSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGS 297

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V++ES+L+D+Y K G V  A Q+F  MP +N+++W++++ G+ QNG  E+A+ +F +M 
Sbjct: 298 NVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMFREME 357

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E     D   F  VL AC+ +  +  G++      +       I   + ++DL G++G +
Sbjct: 358 E----KDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVE-SALIDLYGKSGCI 412

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           + A  +      R+  + W  +L A
Sbjct: 413 DYASRVYSKMSVRNMIT-WNAMLSA 436



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 133/264 (50%), Gaps = 8/264 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQGY 62
            G + HA V+  GL  +  V +SL+ +Y K G  + E+ RVFD M  K+++S ++++ GY
Sbjct: 78  HGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGY 137

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
             + +    + +F EM    L    F+    ++AC  L  +RLG+  H   I      + 
Sbjct: 138 VASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNH 197

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           +I S L  +Y        A ++F +MP  ++I W +++S F++N   EEAL +F  M  G
Sbjct: 198 VISSTLAYMYGVNKEPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRG 257

Query: 179 -GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD  +F  VL+AC ++  + +G++    +     I   +   + ++D+ G++G + 
Sbjct: 258 KGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN-GIGSNVVVESSLLDMYGKSGSVR 316

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           EA  +  N   R +   W  LLG 
Sbjct: 317 EARQVF-NGMPRKNIVSWSALLGG 339



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 63  CQTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           C+ G     IRI       ++ +    +  +L+ C  + +   G + H   ++     D 
Sbjct: 36  CKLGQLTDAIRILNSTHSSEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDR 95

Query: 119 IIESALVDLYAKCGC-VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            + ++L+ LY K G  +    ++F  M V++ I+W SM+SG+  +    +AL +F +M  
Sbjct: 96  NVGNSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVS 155

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGR 204
            G +P+  +    + AC  +G +  GR
Sbjct: 156 FGLQPNKFTLSSAVKACFELGEVRLGR 182


>gi|225216998|gb|ACN85287.1| EMB2261 putative [Oryza australiensis]
          Length = 626

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/336 (60%), Positives = 257/336 (76%), Gaps = 3/336 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R  QG++ HA+V+T GLCGNV+VESS +DMY KCGL+ E+ +VFD+M  +N VS  ALL 
Sbjct: 260 RGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMEVRNEVSRCALLG 319

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ G++E VI +FREM  E+ D +S G VLRACAGL++++ GKE+HC+++R  G +DV
Sbjct: 320 GYCQNGEYEKVIALFREMDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDV 379

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ESALVDLYAKCG VD+A  +F    VRN ITWN+MISGFAQNG GE A+ +F+ M   
Sbjct: 380 VVESALVDLYAKCGAVDYACSVFEASTVRNTITWNAMISGFAQNGHGERAINLFNRMVRE 439

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD++SFIGVL ACSH G++++GR +F SM K+Y I P IEHYNCMVDLL R  LLEE
Sbjct: 440 GPRPDYISFIGVLFACSHTGMVEQGRNYFDSMCKDYGIAPGIEHYNCMVDLLSRVELLEE 499

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE LI  +  R+DSSLW  +LGA  T  N  VAERVAKK+MEL+P  HLSY+LL+NVYR 
Sbjct: 500 AEDLINESPFRNDSSLWAAILGASATHSNPDVAERVAKKMMELEPQYHLSYILLENVYRT 559

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKLN 333
           VGRW DA +IR LM+   VKK PG SWI+AN SKL+
Sbjct: 560 VGRWEDALEIRRLMESRKVKKEPGMSWIDANRSKLH 595



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 136/262 (51%), Gaps = 9/262 (3%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G  +H  V+  G+  + VV SSLVDMYG      ++ + F++M   + +  ++L+  +
Sbjct: 160 KAGACLHGSVLVRGMGDDDVVLSSLVDMYGHVAAPGDARKAFEEMRGPDGICYTSLISAF 219

Query: 63  CQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            +   FE  +R FR M  +     D  +FG ++ A   L     G++ H Q + R  C +
Sbjct: 220 VRNDWFEEAVRWFRSMLTMNGVRPDGCTFGSMMTALGNLKRGSQGRQAHAQVVTRGLCGN 279

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           VI+ES+ +D+YAKCG +  A ++F +M VRN ++  +++ G+ QNG  E+ + +F +M +
Sbjct: 280 VIVESSTLDMYAKCGLMVEARKVFDRMEVRNEVSRCALLGGYCQNGEYEKVIALFREMDK 339

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
                D  S   VL AC+ +  +  G++      +    +  +   + +VDL  + G ++
Sbjct: 340 --EDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVE-SALVDLYAKCGAVD 396

Query: 238 EAETLIENADCRHDSSLWEVLL 259
            A ++ E +  R ++  W  ++
Sbjct: 397 YACSVFEASTVR-NTITWNAMI 417



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 122/269 (45%), Gaps = 10/269 (3%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQG 61
           + G  +HA+    G   +  + ++L+  Y +    +  + R FD +  ++ V+ S++L  
Sbjct: 55  RLGYCLHARAARAGFLADRYLANALLAFYVRLPRHLPHALRAFDDLPHRDVVAHSSILAA 114

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           + + G     +   R M          +  +    ++ACA L   + G  +H   + R  
Sbjct: 115 FLRAGMPRRALASLRAMLAGADDDVSPNAHALSAAVKACAVLRDRKAGACLHGSVLVRGM 174

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D ++ S+LVD+Y        A + F +M   + I + S+IS F +N   EEA+R F  
Sbjct: 175 GDDDVVLSSLVDMYGHVAAPGDARKAFEEMRGPDGICYTSLISAFVRNDWFEEAVRWFRS 234

Query: 175 M-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           M T  G +PD  +F  +++A  ++    +GR+  A +         I   + + D+  + 
Sbjct: 235 MLTMNGVRPDGCTFGSMMTALGNLKRGSQGRQAHAQVVTRGLCGNVIVESSTL-DMYAKC 293

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGAC 262
           GL+ EA  + +  + R++ S   +L G C
Sbjct: 294 GLMVEARKVFDRMEVRNEVSRCALLGGYC 322


>gi|225216882|gb|ACN85180.1| EMB2261 putative [Oryza nivara]
 gi|225216899|gb|ACN85196.1| EMB2261 putative [Oryza rufipogon]
          Length = 615

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/336 (59%), Positives = 258/336 (76%), Gaps = 3/336 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R  QG++ HA+V+T GLCGNV+VESS +DMY KCGL+ E+H+VFD+M  +N VS  ALL 
Sbjct: 260 RGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEAHKVFDRMQVRNEVSRCALLG 319

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ G++E VI +FREM  E+ D +S G VLRACAGL++++ GKE+HC+++R +G +DV
Sbjct: 320 GYCQNGEYEKVIALFREMDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDV 379

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ESALVDLYAKCG VD+A+ +F    VRN ITWN+MI GFAQNG GE A+ +F+ M   
Sbjct: 380 VVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVRE 439

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD++SFIGVL ACSH G++++GR +F SM K+Y I P IEHYNCMVDL  R  LLEE
Sbjct: 440 GPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEE 499

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE LI  +  R+DSSLW  +LGA  T  N  VAERV+KK+MEL+P  HLSY+LL+NVYR 
Sbjct: 500 AEDLINKSPFRNDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENVYRT 559

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKLN 333
           VGRW DA +IR LM+   VKK PG SW++AN SKL+
Sbjct: 560 VGRWEDALEIRRLMESRKVKKEPGMSWVDANRSKLH 595



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 136/261 (52%), Gaps = 9/261 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H  V+  G   + VV SSLVDMYG      ++ +VF++M   + +  ++L+  + +
Sbjct: 162 GACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVR 221

Query: 65  TGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              FE  +R FR M  +     D  +FG ++ A         G++ H Q + R  C +VI
Sbjct: 222 NDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVI 281

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +ES+ +D+YAKCG +  AH++F +M VRN ++  +++ G+ QNG  E+ + +F +M +  
Sbjct: 282 VESSTLDMYAKCGLMVEAHKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDK-- 339

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
              D  S   VL AC+ +  +  G++      +    +  +   + +VDL  + G ++ A
Sbjct: 340 EDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVE-SALVDLYAKCGAVDYA 398

Query: 240 ETLIENADCRHDSSLWEVLLG 260
            ++ E +  R ++  W  ++G
Sbjct: 399 YSVFEASTVR-NTITWNAMIG 418



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 119/266 (44%), Gaps = 10/266 (3%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           +H +    GL  +  + ++L+  Y +    +  + R FD + +++ V+ S++L  + + G
Sbjct: 60  LHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAG 119

Query: 67  DFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                +   R+M          +  +    ++ACA L     G  +H   + R    D +
Sbjct: 120 MPRRALASLRDMLAGADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGV 179

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEG 178
           + S+LVD+Y        A ++F +M   + I + S+IS F +N   EEA+R F  M    
Sbjct: 180 VLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMN 239

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD  +F  +++A  +     +GR+  A +         I   + + D+  + GL+ E
Sbjct: 240 GVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVIVESSTL-DMYAKCGLMVE 298

Query: 239 AETLIENADCRHDSSLWEVLLGACTT 264
           A  + +    R++ S   +L G C  
Sbjct: 299 AHKVFDRMQVRNEVSRCALLGGYCQN 324


>gi|225216963|gb|ACN85255.1| EMB2261 putative [Oryza officinalis]
          Length = 622

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/336 (60%), Positives = 256/336 (76%), Gaps = 3/336 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R  QG++ HA+V+T GLCGNV+VESS +DMY KCGL+ E+ +VFD+M  +N VS  ALL 
Sbjct: 256 RGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLG 315

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ G++E VI +FREM  E+ D +S G VLRACAGL++++ GKE+HC+++R  G +DV
Sbjct: 316 GYCQNGEYEKVIALFREMDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDV 375

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ESALVDLYAKCG VD+A+ +F    VRN ITWN+MI GFAQNG GE A+ +F+ M   
Sbjct: 376 VVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVRE 435

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD++SFIGVL ACSH G++++GR +F SM K+Y I P IEHYNCMVDLL R  LLEE
Sbjct: 436 GPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLLSRVELLEE 495

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE LI  +  R+DSSLW  +LGA  T  N  VAERVAKK+MEL+P  HLSY+LL+NVYR 
Sbjct: 496 AEDLINKSPFRNDSSLWAAILGASATHSNPDVAERVAKKMMELEPQYHLSYILLENVYRT 555

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKLN 333
           VGRW DA +IR LM+   VKK PG SWI+ N SKL+
Sbjct: 556 VGRWEDALEIRRLMESRKVKKEPGMSWIDTNRSKLH 591



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 138/264 (52%), Gaps = 11/264 (4%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G  +H  V+  G   + VV SSLVDMYG      ++ +VF++M   + +  ++L+  +
Sbjct: 156 KAGACLHGSVLVRGFGDDDVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAF 215

Query: 63  CQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            +   FE  +R FR M  +     D  +FG ++ A   L     G++ H Q + R  C +
Sbjct: 216 VRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRGSQGRQAHAQVVTRGLCGN 275

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           VI+ES+ +D+YAKCG +  A ++F +M VRN ++  +++ G+ QNG  E+ + +F +M  
Sbjct: 276 VIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDK 335

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E G   D  S   VL AC+ +  +  G++      +    +  +   + +VDL  + G +
Sbjct: 336 EDG---DWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVE-SALVDLYAKCGAV 391

Query: 237 EEAETLIENADCRHDSSLWEVLLG 260
           + A ++ E +  R ++  W  ++G
Sbjct: 392 DYAYSVFEASTVR-NTITWNAMIG 414



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 9/229 (3%)

Query: 42  RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACA 94
           R FD + +++ V+ S++L  + + G     +   R M          +  +    ++ACA
Sbjct: 91  RAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRSMLAGADDDVSPNAHALSAAVKACA 150

Query: 95  GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS 154
            L   + G  +H   + R    D ++ S+LVD+Y        A ++F +M   + I + S
Sbjct: 151 VLRDRKAGACLHGSVLVRGFGDDDVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTS 210

Query: 155 MISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           +IS F +N   EEA+R F  M    G +PD  +F  +++A  ++    +GR+  A +   
Sbjct: 211 LISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRGSQGRQAHAQVVTR 270

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
                 I   + + D+  + GL+ EA  + +    R++ S   +L G C
Sbjct: 271 GLCGNVIVESSTL-DMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYC 318


>gi|225217042|gb|ACN85326.1| EMB2261 putative [Oryza brachyantha]
          Length = 626

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/335 (60%), Positives = 254/335 (75%), Gaps = 3/335 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R  QG++ HA+V+T GLCGNV+VESS +DMY KCG + E+ +VFD+ML +N VS  ALL 
Sbjct: 258 RENQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGSMVEARKVFDRMLVRNEVSWCALLG 317

Query: 61  GYCQTGDFESVIRIFREME--EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ G++E V+ +FREM+  + D +S G VLRACAGL++++ GKE+HC+++R  G +DV
Sbjct: 318 GYCQNGEYEKVVALFREMDKKDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDV 377

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ESALVDLYAKCG VD+A+ +F    VRN ITWN+MI GFAQNG GE A+ +FD M   
Sbjct: 378 VVESALVDLYAKCGAVDYAYTVFEASTVRNTITWNAMIGGFAQNGHGERAINLFDRMVRE 437

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD++SF+ VL ACSH G++++GRK+F SM+  Y I P IEHYNCMVDLL R  LLEE
Sbjct: 438 GPRPDYISFVSVLFACSHTGMVEQGRKYFNSMSNNYTIAPGIEHYNCMVDLLSRVELLEE 497

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE LI  +  R DSSLW  +LGA  T  N  VAERVAKK+MEL+P  HLSYVLL+NVYR 
Sbjct: 498 AEDLINKSPFRGDSSLWAAILGASATHSNPDVAERVAKKMMELQPQYHLSYVLLENVYRT 557

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKL 332
           VGRW DA +IR LM+   VKK PG SWI+AN SKL
Sbjct: 558 VGRWEDALEIRRLMESRKVKKEPGMSWIDANRSKL 592



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 136/261 (52%), Gaps = 9/261 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H  ++  G   + +V S+LVDMYG      ++ + F++M   + +  ++L+  + +
Sbjct: 160 GACLHGSILVRGFGDDDIVLSALVDMYGHASAPSDAQKAFEEMRAPDGICYTSLISAFVR 219

Query: 65  TGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              FE  +R FR M  +     D  +FG ++ A   L     G++ H Q + R  C +VI
Sbjct: 220 NDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRENQGRQAHAQVVTRGLCGNVI 279

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +ES+ +D+YAKCG +  A ++F +M VRN ++W +++ G+ QNG  E+ + +F +M +  
Sbjct: 280 VESSTLDMYAKCGSMVEARKVFDRMLVRNEVSWCALLGGYCQNGEYEKVVALFREMDK-- 337

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
              D  S   VL AC+ +  +  G++      +    +  +   + +VDL  + G ++ A
Sbjct: 338 KDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVE-SALVDLYAKCGAVDYA 396

Query: 240 ETLIENADCRHDSSLWEVLLG 260
            T+ E +  R ++  W  ++G
Sbjct: 397 YTVFEASTVR-NTITWNAMIG 416



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 121/261 (46%), Gaps = 10/261 (3%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           +HA+    GL  +  + ++L+  Y +    +  + R FD + +++ V+ S++L  + + G
Sbjct: 59  IHARAARGGLLADRYLANALLSFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAG 118

Query: 67  DFESVIRIFREM-EEIDLFS-----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                +   R M  E D  S     F   ++AC+ L     G  +H   + R    D I+
Sbjct: 119 MPRRALASLRSMLAEADDVSPNAHAFSAAVKACSVLRDRNAGACLHGSILVRGFGDDDIV 178

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGG 179
            SALVD+Y        A + F +M   + I + S+IS F +N   EEA+R F  M    G
Sbjct: 179 LSALVDMYGHASAPSDAQKAFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNG 238

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +PD  +F  +++A  ++   ++GR+  A +         I   + + D+  + G + EA
Sbjct: 239 VRPDGCTFGSMMTALGNLKRENQGRQAHAQVVTRGLCGNVIVESSTL-DMYAKCGSMVEA 297

Query: 240 ETLIENADCRHDSSLWEVLLG 260
             + +    R++ S W  LLG
Sbjct: 298 RKVFDRMLVRNEVS-WCALLG 317


>gi|413934541|gb|AFW69092.1| hypothetical protein ZEAMMB73_188982 [Zea mays]
          Length = 630

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/337 (59%), Positives = 256/337 (75%), Gaps = 5/337 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R +QG+E HA+V+T GLCGNV+VESS +DMY KCG++ ++ +VFD+M   N+VS  ALL 
Sbjct: 261 RARQGREAHAQVVTRGLCGNVIVESSTLDMYAKCGMMVDARKVFDRMKAPNAVSWCALLG 320

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GYCQTG  E V+ +FR+M    ++ D +S G +LR+CAGL+A++LGKE+HC+ +R  GC 
Sbjct: 321 GYCQTGKHEKVLSLFRQMHMQEQDDDWYSLGTLLRSCAGLSAVKLGKEIHCRSMRMRGCG 380

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DVI+ESALVDLYAKCG VD+A+++F    VRN+ITWN+MI G AQNG GE A+ +F++M 
Sbjct: 381 DVIVESALVDLYAKCGAVDYAYRVFKMSSVRNMITWNAMICGCAQNGHGERAISLFNEMV 440

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            GG KPD++SFIGVL ACSH G+++ GR +F SM+K+Y I P IEHYNC+VDLL R  LL
Sbjct: 441 RGGVKPDYISFIGVLFACSHTGMVEEGRNYFNSMSKDYGIPPGIEHYNCIVDLLSRVELL 500

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEAE L+  +  R DSSLW  +LGAC T  N  VA RVAKK+MEL+P  HLSYVLL+NVY
Sbjct: 501 EEAEDLVNKSQFRDDSSLWAAILGACATHTNPDVAVRVAKKMMELEPQYHLSYVLLENVY 560

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKL 332
           R +G W DA K+R LMK   VKK PG SWI AN SKL
Sbjct: 561 RTIGHWEDAVKVRKLMKSRKVKKEPGTSWINANRSKL 597



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 150/300 (50%), Gaps = 18/300 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VH   +  G   + VV S+LVDMYG  G   ++ + F++M   + +  ++L+  
Sbjct: 160 LRAGACVHGTTVVRGYGDDGVVLSALVDMYGHSGAPGDARKAFEEMRAPDGICYTSLISA 219

Query: 62  YCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           + +   F+  +R F+ M   D       +FG ++ A   +   R G+E H Q + R  C 
Sbjct: 220 FVRNDWFDEALRWFQAMLRTDGVWPDGCTFGSMMSALGNMKRARQGREAHAQVVTRGLCG 279

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +VI+ES+ +D+YAKCG +  A ++F +M   N ++W +++ G+ Q G+ E+ L +F  M 
Sbjct: 280 NVIVESSTLDMYAKCGMMVDARKVFDRMKAPNAVSWCALLGGYCQTGKHEKVLSLFRQMH 339

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                 D  S   +L +C+ +  +  G++ H  SM         +E  + +VDL  + G 
Sbjct: 340 MQEQDDDWYSLGTLLRSCAGLSAVKLGKEIHCRSMRMRGCGDVIVE--SALVDLYAKCGA 397

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL-----KPDCHLSYV 290
           ++ A  + + +  R+  + W  ++  C   +N H  ER      E+     KPD ++S++
Sbjct: 398 VDYAYRVFKMSSVRNMIT-WNAMICGCA--QNGH-GERAISLFNEMVRGGVKPD-YISFI 452



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 21/252 (8%)

Query: 42  RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----------IDLFSFGIVLR 91
           R FD + +++ V+ S++L  + + G     +   R M                +     +
Sbjct: 93  RAFDDLPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMASGGYGADDDVAPSAHALSASAK 152

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
           ACA L  LR G  VH   + R    D ++ SALVD+Y   G    A + F +M   + I 
Sbjct: 153 ACAVLHDLRAGACVHGTTVVRGYGDDGVVLSALVDMYGHSGAPGDARKAFEEMRAPDGIC 212

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTE-GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           + S+IS F +N   +EALR F  M    G  PD  +F  ++SA  +M    +GR+  A +
Sbjct: 213 YTSLISAFVRNDWFDEALRWFQAMLRTDGVWPDGCTFGSMMSALGNMKRARQGREAHAQV 272

Query: 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT------ 264
                    I   + + D+  + G++ +A  + +     +  S   +L G C T      
Sbjct: 273 VTRGLCGNVIVESSTL-DMYAKCGMMVDARKVFDRMKAPNAVSWCALLGGYCQTGKHEKV 331

Query: 265 ---FRNAHVAER 273
              FR  H+ E+
Sbjct: 332 LSLFRQMHMQEQ 343


>gi|51091970|dbj|BAD35499.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 665

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/336 (59%), Positives = 257/336 (76%), Gaps = 3/336 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R  QG++ HA+V+T GLCGNV+VESS +DMY KCGL+ E+ +VFD+M  +N VS  ALL 
Sbjct: 310 RGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLG 369

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ G++E VI +FREM  E+ D +S G VLRACAGL++++ GKE+HC+++R +G +DV
Sbjct: 370 GYCQNGEYEKVIALFREMDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDV 429

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ESALVDLYAKCG VD+A+ +F    VRN ITWN+MI GFAQNG GE A+ +F+ M   
Sbjct: 430 VVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVRE 489

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD++SFIGVL ACSH G++++GR +F SM K+Y I P IEHYNCMVDL  R  LLEE
Sbjct: 490 GPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEE 549

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE LI  +  R+DSSLW  +LGA  T  N  VAERV+KK+MEL+P  HLSY+LL+NVYR 
Sbjct: 550 AEDLINKSPFRNDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENVYRT 609

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKLN 333
           VGRW DA +IR LM+   VKK PG SW++AN SKL+
Sbjct: 610 VGRWEDALEIRRLMESRKVKKEPGMSWVDANRSKLH 645



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 136/262 (51%), Gaps = 11/262 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H  V+  G   + VV SSLVDMYG      ++ +VF++M   + +  ++L+  + +
Sbjct: 212 GACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVR 271

Query: 65  TGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              FE  +R FR M  +     D  +FG ++ A         G++ H Q + R  C +VI
Sbjct: 272 NDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVI 331

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEG 178
           +ES+ +D+YAKCG +  A ++F +M VRN ++  +++ G+ QNG  E+ + +F +M  E 
Sbjct: 332 VESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDKED 391

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G   D  S   VL AC+ +  +  G++      +    +  +   + +VDL  + G ++ 
Sbjct: 392 G---DWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVE-SALVDLYAKCGAVDY 447

Query: 239 AETLIENADCRHDSSLWEVLLG 260
           A ++ E +  R ++  W  ++G
Sbjct: 448 AYSVFEASTVR-NTITWNAMIG 468



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 119/264 (45%), Gaps = 10/264 (3%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           +H +    GL  +  + ++L+  Y +    +  + R FD + +++ V+ S++L  + + G
Sbjct: 110 LHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAG 169

Query: 67  DFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                +   R+M          +  +    ++ACA L     G  +H   + R    D +
Sbjct: 170 MPRRALASLRDMLAGADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGV 229

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEG 178
           + S+LVD+Y        A ++F +M   + I + S+IS F +N   EEA+R F  M    
Sbjct: 230 VLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMN 289

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD  +F  +++A  +     +GR+  A +         I   + + D+  + GL+ E
Sbjct: 290 GVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVIVESSTL-DMYAKCGLMVE 348

Query: 239 AETLIENADCRHDSSLWEVLLGAC 262
           A  + +    R++ S   +L G C
Sbjct: 349 ARKVFDRMQVRNEVSRCALLGGYC 372


>gi|125597837|gb|EAZ37617.1| hypothetical protein OsJ_21952 [Oryza sativa Japonica Group]
          Length = 615

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/336 (59%), Positives = 257/336 (76%), Gaps = 3/336 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R  QG++ HA+V+T GLCGNV+VESS +DMY KCGL+ E+ +VFD+M  +N VS  ALL 
Sbjct: 260 RGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLG 319

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ G++E VI +FREM  E+ D +S G VLRACAGL++++ GKE+HC+++R +G +DV
Sbjct: 320 GYCQNGEYEKVIALFREMDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDV 379

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ESALVDLYAKCG VD+A+ +F    VRN ITWN+MI GFAQNG GE A+ +F+ M   
Sbjct: 380 VVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVRE 439

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD++SFIGVL ACSH G++++GR +F SM K+Y I P IEHYNCMVDL  R  LLEE
Sbjct: 440 GPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEE 499

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE LI  +  R+DSSLW  +LGA  T  N  VAERV+KK+MEL+P  HLSY+LL+NVYR 
Sbjct: 500 AEDLINKSPFRNDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENVYRT 559

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKLN 333
           VGRW DA +IR LM+   VKK PG SW++AN SKL+
Sbjct: 560 VGRWEDALEIRRLMESRKVKKEPGMSWVDANRSKLH 595



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 135/261 (51%), Gaps = 9/261 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H  V+  G   + VV SSLVDMYG      ++ +VF++M   + +  ++L+  + +
Sbjct: 162 GACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVR 221

Query: 65  TGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              FE  +R FR M  +     D  +FG ++ A         G++ H Q + R  C +VI
Sbjct: 222 NDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVI 281

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +ES+ +D+YAKCG +  A ++F +M VRN ++  +++ G+ QNG  E+ + +F +M +  
Sbjct: 282 VESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDK-- 339

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
              D  S   VL AC+ +  +  G++      +    +  +   + +VDL  + G ++ A
Sbjct: 340 EDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVE-SALVDLYAKCGAVDYA 398

Query: 240 ETLIENADCRHDSSLWEVLLG 260
            ++ E +  R ++  W  ++G
Sbjct: 399 YSVFEASTVR-NTITWNAMIG 418



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 9/231 (3%)

Query: 42  RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACA 94
           R FD + +++ V+ S++L  + + G     +   R+M          +  +    ++ACA
Sbjct: 95  RAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRDMLAGADDDVSPNAHALSAAVKACA 154

Query: 95  GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS 154
            L     G  +H   + R    D ++ S+LVD+Y        A ++F +M   + I + S
Sbjct: 155 VLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTS 214

Query: 155 MISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           +IS F +N   EEA+R F  M    G +PD  +F  +++A  +     +GR+  A +   
Sbjct: 215 LISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTR 274

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
                 I   + + D+  + GL+ EA  + +    R++ S   +L G C  
Sbjct: 275 GLCGNVIVESSTL-DMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQN 324


>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 611

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/331 (58%), Positives = 262/331 (79%), Gaps = 1/331 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+EVH KV+TLG+ GNV VESSL+DMYGKCG V  +  VFD + +KN V+ +A+L  
Sbjct: 275 LRMGREVHGKVVTLGMKGNVFVESSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGV 334

Query: 62  YCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           YC  G+  SV+ + RE    +D++SFG ++RAC+GLAA+R G EVHCQY+RR G +DV++
Sbjct: 335 YCHNGECGSVLGLVREWRSMVDVYSFGTIIRACSGLAAVRQGNEVHCQYVRRGGWRDVVV 394

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           ESALVDLYAKCG VDFA+++F +M  RNLITWN+MI GFAQNGRG+E + +F++M + G 
Sbjct: 395 ESALVDLYAKCGSVDFAYRLFSRMEARNLITWNAMIGGFAQNGRGQEGVELFEEMVKEGV 454

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD +SF+ VL ACSH GL+D+GR++F  M +EY I+P + HY CM+D+LGRA L+EEAE
Sbjct: 455 RPDWISFVNVLFACSHNGLVDQGRRYFDLMRREYGIRPGVVHYTCMIDILGRAELIEEAE 514

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
           +L+E+ADCR+D S W VLLGACT   +   AER+AKK+++L+PD HLSYVLL N+YRAVG
Sbjct: 515 SLLESADCRYDHSRWAVLLGACTKCSDYVTAERIAKKMIQLEPDFHLSYVLLGNIYRAVG 574

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           +WN+A +IR LM+  GVKK+PGKSWIE+  +
Sbjct: 575 KWNEALEIRKLMEERGVKKVPGKSWIESEKQ 605



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 134/267 (50%), Gaps = 12/267 (4%)

Query: 2   LKQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L  GK +HA V   G    N VV  +L+DMYG+  +VD++ +VFD++ + + V  +A++ 
Sbjct: 171 LHLGKTLHAVVFIRGFHSNNNVVACALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVIS 230

Query: 61  GYCQTGDFESVIRIFREME------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
              +   F   +R+F  M       E+D F+FG +L AC  L  LR+G+EVH + +    
Sbjct: 231 TLARNDRFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGM 290

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             +V +ES+L+D+Y KCG V  A  +F  +  +N +   +M+  +  NG   E   +   
Sbjct: 291 KGNVFVESSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGVYCHNG---ECGSVLGL 347

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           + E  +  D  SF  ++ ACS +  + +G +      +    +  +   + +VDL  + G
Sbjct: 348 VREWRSMVDVYSFGTIIRACSGLAAVRQGNEVHCQYVRRGGWRDVVVE-SALVDLYAKCG 406

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
            ++ A  L    + R+  + W  ++G 
Sbjct: 407 SVDFAYRLFSRMEARNLIT-WNAMIGG 432



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 135/262 (51%), Gaps = 9/262 (3%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G  +HA V+  G L    V  S L           ++  +FD +  K+ ++ ++++ G+ 
Sbjct: 72  GTHLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARALFDALPFKDVIAWTSIISGHV 131

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHC-QYIRRSGCKDV 118
           Q    ++ + +F +M     E + F+   +L+AC+ L  L LGK +H   +IR     + 
Sbjct: 132 QKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQLENLHLGKTLHAVVFIRGFHSNNN 191

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++  AL+D+Y +   VD A ++F ++P  + + W ++IS  A+N R  EA+R+F  M +G
Sbjct: 192 VVACALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVISTLARNDRFREAVRVFFAMHDG 251

Query: 179 --GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G + D  +F  +L+AC ++G +  GR+    +     +K  +   + ++D+ G+ G +
Sbjct: 252 GLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVT-LGMKGNVFVESSLLDMYGKCGEV 310

Query: 237 EEAETLIENADCRHDSSLWEVL 258
             A  + +  + +++ +L  +L
Sbjct: 311 GCARVVFDGLEEKNEVALTAML 332



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 97/219 (44%), Gaps = 11/219 (5%)

Query: 62  YCQTGDFESVIRIFR---EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           +C+ G     + + +   + + +    +  +L+AC    +  LG  +H   ++     D 
Sbjct: 29  HCKLGALPKALILLKAQAQAQALKPVVYASLLQACRKAHSFPLGTHLHAHVLKSGFLADR 88

Query: 119 IIESALVDLYAKCGC-VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            + ++L+ LY+K       A  +F  +P +++I W S+ISG  Q  + + A+ +F  M  
Sbjct: 89  FVANSLLSLYSKLSPHFSQARALFDALPFKDVIAWTSIISGHVQKAQPKTAVHLFLQMLG 148

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNC-MVDLLGRAGL 235
              +P+  +   +L ACS +  +  G+  H     + +     +    C ++D+ GR+ +
Sbjct: 149 QAIEPNAFTLSSILKACSQLENLHLGKTLHAVVFIRGFHSNNNV--VACALIDMYGRSRV 206

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
           +++A  + +      D   W  ++   T  RN    E V
Sbjct: 207 VDDARKVFDELP-EPDYVCWTAVIS--TLARNDRFREAV 242


>gi|125556039|gb|EAZ01645.1| hypothetical protein OsI_23682 [Oryza sativa Indica Group]
          Length = 615

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/336 (59%), Positives = 257/336 (76%), Gaps = 3/336 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R  QG++ HA+V+T GLCGNV+VESS +DMY KCGL+ E+ +VFD+M  +N VS  ALL 
Sbjct: 260 RGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLG 319

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ G++E VI +FREM  E+ D +S G VLRACAGL++++ GKE+HC+++R +G +DV
Sbjct: 320 GYCQNGEYEKVIALFREMDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDV 379

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ESALVDLYAKCG VD+A+ +F    VRN ITWN+MI GFAQNG GE A+ +F+ M   
Sbjct: 380 VVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVRE 439

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD++SFIGVL ACSH G++++GR +F SM K+Y I P IEHYNCMVDL  R  LLEE
Sbjct: 440 GPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEE 499

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE LI  +  R+DSSLW  +LGA  T  N  VAERV+KK+MEL+P  HLSY+LL+NVYR 
Sbjct: 500 AEDLINKSPFRNDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENVYRT 559

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKLN 333
           VGRW DA +IR LM+   VKK PG SW++AN SKL+
Sbjct: 560 VGRWEDALEIRRLMESRKVKKEPGMSWVDANRSKLH 595



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 135/261 (51%), Gaps = 9/261 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H  V+  G   + VV SSLVDMYG      ++ +VF++M   + +  ++L+  + +
Sbjct: 162 GACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVR 221

Query: 65  TGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              FE  +R FR M  +     D  +FG ++ A         G++ H Q + R  C +VI
Sbjct: 222 NDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVI 281

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +ES+ +D+YAKCG +  A ++F +M VRN ++  +++ G+ QNG  E+ + +F +M +  
Sbjct: 282 VESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDK-- 339

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
              D  S   VL AC+ +  +  G++      +    +  +   + +VDL  + G ++ A
Sbjct: 340 EDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVE-SALVDLYAKCGAVDYA 398

Query: 240 ETLIENADCRHDSSLWEVLLG 260
            ++ E +  R ++  W  ++G
Sbjct: 399 YSVFEASTVR-NTITWNAMIG 418



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 119/266 (44%), Gaps = 10/266 (3%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           +H +    GL  +  + ++L+  Y +    +  + R FD + +++ V+ S++L  + + G
Sbjct: 60  LHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAG 119

Query: 67  DFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                +   R+M          +  +    ++ACA L     G  +H   + R    D +
Sbjct: 120 MPRRALASLRDMLAGADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGV 179

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEG 178
           + S+LVD+Y        A ++F +M   + I + S+IS F +N   EEA+R F  M    
Sbjct: 180 VLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMN 239

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD  +F  +++A  +     +GR+  A +         I   + + D+  + GL+ E
Sbjct: 240 GVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVIVESSTL-DMYAKCGLMVE 298

Query: 239 AETLIENADCRHDSSLWEVLLGACTT 264
           A  + +    R++ S   +L G C  
Sbjct: 299 ARKVFDRMQVRNEVSRCALLGGYCQN 324


>gi|115468918|ref|NP_001058058.1| Os06g0611200 [Oryza sativa Japonica Group]
 gi|113596098|dbj|BAF19972.1| Os06g0611200 [Oryza sativa Japonica Group]
          Length = 615

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/336 (59%), Positives = 257/336 (76%), Gaps = 3/336 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R  QG++ HA+V+T GLCGNV+VESS +DMY KCGL+ E+ +VFD+M  +N VS  ALL 
Sbjct: 260 RGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLG 319

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ G++E VI +FREM  E+ D +S G VLRACAGL++++ GKE+HC+++R +G +DV
Sbjct: 320 GYCQNGEYEKVIALFREMDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDV 379

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ESALVDLYAKCG VD+A+ +F    VRN ITWN+MI GFAQNG GE A+ +F+ M   
Sbjct: 380 VVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVRE 439

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD++SFIGVL ACSH G++++GR +F SM K+Y I P IEHYNCMVDL  R  LLEE
Sbjct: 440 GPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEE 499

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE LI  +  R+DSSLW  +LGA  T  N  VAERV+KK+MEL+P  HLSY+LL+NVYR 
Sbjct: 500 AEDLINKSPFRNDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENVYRT 559

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKLN 333
           VGRW DA +IR LM+   VKK PG SW++AN SKL+
Sbjct: 560 VGRWEDALEIRRLMESRKVKKEPGMSWVDANRSKLH 595



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 135/261 (51%), Gaps = 9/261 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H  V+  G   + VV SSLVDMYG      ++ +VF++M   + +  ++L+  + +
Sbjct: 162 GACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVR 221

Query: 65  TGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              FE  +R FR M  +     D  +FG ++ A         G++ H Q + R  C +VI
Sbjct: 222 NDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVI 281

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +ES+ +D+YAKCG +  A ++F +M VRN ++  +++ G+ QNG  E+ + +F +M +  
Sbjct: 282 VESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDK-- 339

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
              D  S   VL AC+ +  +  G++      +    +  +   + +VDL  + G ++ A
Sbjct: 340 EDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVE-SALVDLYAKCGAVDYA 398

Query: 240 ETLIENADCRHDSSLWEVLLG 260
            ++ E +  R ++  W  ++G
Sbjct: 399 YSVFEASTVR-NTITWNAMIG 418



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 119/266 (44%), Gaps = 10/266 (3%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           +H +    GL  +  + ++L+  Y +    +  + R FD + +++ V+ S++L  + + G
Sbjct: 60  LHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAG 119

Query: 67  DFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                +   R+M          +  +    ++ACA L     G  +H   + R    D +
Sbjct: 120 MPRRALASLRDMLAGADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGV 179

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEG 178
           + S+LVD+Y        A ++F +M   + I + S+IS F +N   EEA+R F  M    
Sbjct: 180 VLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMN 239

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD  +F  +++A  +     +GR+  A +         I   + + D+  + GL+ E
Sbjct: 240 GVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVIVESSTL-DMYAKCGLMVE 298

Query: 239 AETLIENADCRHDSSLWEVLLGACTT 264
           A  + +    R++ S   +L G C  
Sbjct: 299 ARKVFDRMQVRNEVSRCALLGGYCQN 324


>gi|225216941|gb|ACN85235.1| EMB2261 putative [Oryza minuta]
          Length = 612

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/336 (58%), Positives = 256/336 (76%), Gaps = 3/336 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+ QG++ HA+V+  GLCGNV+VESS +DMY KCGL+ E+ +VFD+M  +N VS  ALL 
Sbjct: 257 RVSQGRQAHAQVVGRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSQCALLG 316

Query: 61  GYCQTGDFESVIRIFREMEEID--LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ G++E VI +FREM+++D   +S G VLRACAGL++++ GKE+HC+++R  G +DV
Sbjct: 317 GYCQNGEYEKVITLFREMDKVDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDV 376

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ESALVDLYAKCG VD+A+ +F    VRN ITWN+MI GF QNG GE+A+ +F  M   
Sbjct: 377 VVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFTQNGHGEQAINLFKRMVRE 436

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD++SFIGVL ACSH G++++GR +F SM ++Y I P IEHYNCMVDLL R  LLEE
Sbjct: 437 GPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCEDYSIAPGIEHYNCMVDLLSRVELLEE 496

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE LI  +  R+DSSLW  +LGA  T  N  VAERVAKK+MEL+P  HLSY+LL+NVYR 
Sbjct: 497 AEDLINKSPFRNDSSLWAAILGASATHSNPDVAERVAKKMMELEPQYHLSYILLENVYRT 556

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKLN 333
           +GRW  A +IR LM+   VKK PG SWI+AN SKL+
Sbjct: 557 IGRWGYALEIRRLMESRKVKKEPGMSWIDANRSKLH 592



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 147/286 (51%), Gaps = 9/286 (3%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G  +H  V+  G   + VV SSLVDMYG      ++ +VF++M   + +  ++L+  +
Sbjct: 157 KAGACLHGSVLVRGFGDDDVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAF 216

Query: 63  CQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            +   FE  +R FR M  +     D  +FG ++ A   L  +  G++ H Q + R  C +
Sbjct: 217 VRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRVSQGRQAHAQVVGRGLCGN 276

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           VI+ES+ +D+YAKCG +  A ++F +M VRN ++  +++ G+ QNG  E+ + +F +M +
Sbjct: 277 VIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSQCALLGGYCQNGEYEKVITLFREMDK 336

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
                D  S   VL AC+ +  +  G++      +    +  +   + +VDL  + G ++
Sbjct: 337 --VDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVE-SALVDLYAKCGAVD 393

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283
            A ++ E +  R ++  W  ++G  T   +   A  + K+++   P
Sbjct: 394 YAYSVFEASTVR-NTITWNAMIGGFTQNGHGEQAINLFKRMVREGP 438



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 106/229 (46%), Gaps = 9/229 (3%)

Query: 42  RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACA 94
           R FD + +++ V+ S++L  + + G     +   R M          +  +    ++ACA
Sbjct: 92  RAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRAMLTGADDDVSPNAHALSAAVKACA 151

Query: 95  GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS 154
            L   + G  +H   + R    D ++ S+LVD+Y        A ++F +M   + I + S
Sbjct: 152 VLRDHKAGACLHGSVLVRGFGDDDVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTS 211

Query: 155 MISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           +IS F +N   EEA+R F  M    G +PD  +F  +++A  ++  + +GR+  A +   
Sbjct: 212 LISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRVSQGRQAHAQVVGR 271

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
                 I   + + D+  + GL+ EA  + +    R++ S   +L G C
Sbjct: 272 GLCGNVIVESSTL-DMYAKCGLMVEARKVFDRMQVRNEVSQCALLGGYC 319


>gi|225217011|gb|ACN85298.1| EMB2261 putative [Oryza coarctata]
          Length = 621

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/333 (59%), Positives = 254/333 (76%), Gaps = 3/333 (0%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
            +G++ HA+V+T GLCGNV+VESS +DMY KC ++ E+ +VFD+M  +N+VS  ALL GY
Sbjct: 255 NRGRQAHAQVVTRGLCGNVIVESSTLDMYAKCRMIVEARKVFDRMQVRNAVSWCALLGGY 314

Query: 63  CQTGDFESVIRIFREME--EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           CQ G++E V+ +FREM+  + D +S G VLRACAGL+++  GKE+HC+++R  G ++V++
Sbjct: 315 CQNGEYEKVVALFREMDKDDDDWYSLGTVLRACAGLSSVNPGKEIHCRFLRMGGWRNVVV 374

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           ESALVDLYAKCG VD+A+ +F    VRN ITWN+MI GFAQNG GE A+ +FD M + G 
Sbjct: 375 ESALVDLYAKCGAVDYAYGVFEASIVRNTITWNAMIGGFAQNGHGERAIDLFDRMVKEGP 434

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD++SF+GVL ACSH G++++GRK+F SM+K+Y I P IEHYNCMVDLL R  LLEEAE
Sbjct: 435 RPDYISFVGVLFACSHTGMVEQGRKYFNSMSKDYSITPGIEHYNCMVDLLSRVELLEEAE 494

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LI  +  R DSSLW  +LGA  T  N  VAERVAKK MEL+P  HLSYVLL+NVYR VG
Sbjct: 495 DLINKSPFRDDSSLWAAILGASATHSNPDVAERVAKKTMELEPQYHLSYVLLENVYRTVG 554

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKL 332
           RW DA  IR+LMK   VKK PG SWI+ N SKL
Sbjct: 555 RWEDALDIRSLMKSRKVKKEPGMSWIDVNRSKL 587



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 135/264 (51%), Gaps = 15/264 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H  ++  G   + +V S+LVDMYG      ++ + F++M   + +  ++L+  + +
Sbjct: 155 GACLHGSILVRGFGDDDIVLSALVDMYGHAAAPGDARKAFEEMRTPDGICYTSLISAFVR 214

Query: 65  TGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              FE  +R  R M  +     D  +FG ++ A   L     G++ H Q + R  C +VI
Sbjct: 215 NDWFEEAVRWSRSMLMLNGVRPDGCTFGSMMTALGNLKMGNRGRQAHAQVVTRGLCGNVI 274

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +ES+ +D+YAKC  +  A ++F +M VRN ++W +++ G+ QNG  E+ + +F +M +  
Sbjct: 275 VESSTLDMYAKCRMIVEARKVFDRMQVRNAVSWCALLGGYCQNGEYEKVVALFREMDK-- 332

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK---HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              D  S   VL AC+ +  ++ G++    F  M     +  +    + +VDL  + G +
Sbjct: 333 DDDDWYSLGTVLRACAGLSSVNPGKEIHCRFLRMGGWRNVVVE----SALVDLYAKCGAV 388

Query: 237 EEAETLIENADCRHDSSLWEVLLG 260
           + A  + E +  R ++  W  ++G
Sbjct: 389 DYAYGVFEASIVR-NTITWNAMIG 411



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 9/226 (3%)

Query: 42  RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAG 95
           R FD + +++ V+ S++L  + + G     +   R M         +  +F   ++ACA 
Sbjct: 89  RAFDDLPRRDVVAHSSILAAFLRAGMPRRALSSLRSMLAGADDVSPNAHAFSAAVKACAV 148

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
           L     G  +H   + R    D I+ SALVD+Y        A + F +M   + I + S+
Sbjct: 149 LRDRNAGACLHGSILVRGFGDDDIVLSALVDMYGHAAAPGDARKAFEEMRTPDGICYTSL 208

Query: 156 ISGFAQNGRGEEALRIFDDMTE-GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY 214
           IS F +N   EEA+R    M    G +PD  +F  +++A  ++ + +RGR+  A +    
Sbjct: 209 ISAFVRNDWFEEAVRWSRSMLMLNGVRPDGCTFGSMMTALGNLKMGNRGRQAHAQVVTRG 268

Query: 215 RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
                I   + + D+  +  ++ EA  + +    R+  S W  LLG
Sbjct: 269 LCGNVIVESSTL-DMYAKCRMIVEARKVFDRMQVRNAVS-WCALLG 312


>gi|225216917|gb|ACN85213.1| EMB2261 putative [Oryza glaberrima]
          Length = 615

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/336 (58%), Positives = 255/336 (75%), Gaps = 3/336 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R  Q ++ HA+V+T GLCGNV+VESS +DMY KCGL+ E+ +VFD+M   N VS  ALL 
Sbjct: 260 RGSQARQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVSNEVSRCALLG 319

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ G++E VI +F+EM  E+ D +S G VLRACAGL++++ GKE+HC+++R +G +DV
Sbjct: 320 GYCQNGEYEKVIALFKEMDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDV 379

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ESALVDLYAKCG VD+A+ +F    VRN ITWN+MI GFAQNG GE A+ +F+ M   
Sbjct: 380 VVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVRE 439

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD++SFIGVL ACSH G++++GR +F SM K+Y I P IEHYNCMVDL  R  LLEE
Sbjct: 440 GPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEE 499

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE LI  +  R+DSSLW  +LGA  T  N  VAERV+KK+MEL+P  HLSY+LL+NVYR 
Sbjct: 500 AEDLINKSPFRNDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENVYRT 559

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKLN 333
           VGRW DA +IR LM+   VKK PG SW++AN SKL+
Sbjct: 560 VGRWEDALEIRRLMESRKVKKEPGMSWVDANRSKLH 595



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 134/262 (51%), Gaps = 11/262 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H  V+  G   + VV SSLVDMYG      ++ +VF++M   + +  ++L+  + +
Sbjct: 162 GACLHGSVLVRGFGDDSVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVR 221

Query: 65  TGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              FE  +R FR M  +     D  +FG ++ A          ++ H Q + R  C +VI
Sbjct: 222 NDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQARQAHAQVVTRGLCGNVI 281

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEG 178
           +ES+ +D+YAKCG +  A ++F +M V N ++  +++ G+ QNG  E+ + +F +M  E 
Sbjct: 282 VESSTLDMYAKCGLMVEARKVFDRMQVSNEVSRCALLGGYCQNGEYEKVIALFKEMDKED 341

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G   D  S   VL AC+ +  +  G++      +    +  +   + +VDL  + G ++ 
Sbjct: 342 G---DWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVE-SALVDLYAKCGAVDY 397

Query: 239 AETLIENADCRHDSSLWEVLLG 260
           A ++ E +  R ++  W  ++G
Sbjct: 398 AYSVFEASTVR-NTITWNAMIG 418



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 117/264 (44%), Gaps = 10/264 (3%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           +H +    GL  +  + ++L+  Y +    +  + R FD + +++ V+ S++L  + + G
Sbjct: 60  LHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAG 119

Query: 67  DFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                +   R+M          +  +    ++ACA L     G  +H   + R    D +
Sbjct: 120 MPRRALASLRDMLAGADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDSV 179

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEG 178
           + S+LVD+Y        A ++F +M   + I + S+IS F +N   EEA+R F  M    
Sbjct: 180 VLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMN 239

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD  +F  +++A  +     + R+  A +         I   + + D+  + GL+ E
Sbjct: 240 GVRPDGCTFGSMMTALGNSKRGSQARQAHAQVVTRGLCGNVIVESSTL-DMYAKCGLMVE 298

Query: 239 AETLIENADCRHDSSLWEVLLGAC 262
           A  + +     ++ S   +L G C
Sbjct: 299 ARKVFDRMQVSNEVSRCALLGGYC 322


>gi|357117671|ref|XP_003560587.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Brachypodium distachyon]
          Length = 602

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/342 (57%), Positives = 255/342 (74%), Gaps = 5/342 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R +QG E HA+V+T GLCG+V+VESS +DMY KCG++ E+ RVFD+M  +N+VS SALL 
Sbjct: 256 RARQGSEAHAQVVTRGLCGSVIVESSTLDMYAKCGMMLEARRVFDEMQVRNAVSWSALLG 315

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ  ++E V+ +FR+M  E  D +S G VLRACAGL++++ GKE+HC+++R  G +DV
Sbjct: 316 GYCQNAEYEKVLVLFRQMDKEYDDSYSLGTVLRACAGLSSVKPGKEIHCRFLRNGGWRDV 375

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ESALVDLYAKCG VD+A ++F    VRN ITWN+MI GFAQNG  E A+ +F+ M   
Sbjct: 376 VVESALVDLYAKCGAVDYACRVFEASSVRNTITWNAMIGGFAQNGHAERAINLFNQMVRE 435

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD++SFIGVL ACSH G++++GR +F SM+K+Y I P IEHYNC+VDLL R  LLEE
Sbjct: 436 GARPDYISFIGVLFACSHNGMVEQGRNYFNSMSKDYGIAPGIEHYNCIVDLLSRVELLEE 495

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE LI  +   +DSSLW  +LGA  T  N  VAERVAKK+MEL+P  HLSY+LL+NVYR 
Sbjct: 496 AEDLINKSPFSNDSSLWAAILGASATQSNPDVAERVAKKMMELEPQYHLSYILLENVYRT 555

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNH---DLD 337
           VGRW DA +IR LMK   VKK PG SWI+ N    H   D+D
Sbjct: 556 VGRWEDASEIRRLMKSRKVKKDPGMSWIDVNRNKIHMCNDMD 597



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 149/296 (50%), Gaps = 18/296 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  VH  ++  G   + +V S+LVDMYG      ++ + F++M   + +  ++L+  + +
Sbjct: 158 GACVHGVILVRGYADDDIVLSALVDMYGHTASPGDARKAFEEMCTPDGICYTSLISAFVR 217

Query: 65  TGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              FE  +R FR M      E D  +FG ++ A   L   R G E H Q + R  C  VI
Sbjct: 218 NDWFEEAVRWFRTMVTRNGVEPDGCTFGSMMTALGNLRRARQGSEAHAQVVTRGLCGSVI 277

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +ES+ +D+YAKCG +  A ++F +M VRN ++W++++ G+ QN   E+ L +F  M +  
Sbjct: 278 VESSTLDMYAKCGMMLEARRVFDEMQVRNAVSWSALLGGYCQNAEYEKVLVLFRQMDK-- 335

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
              D  S   VL AC+ +  +  G++      +    +  +   + +VDL  + G ++ A
Sbjct: 336 EYDDSYSLGTVLRACAGLSSVKPGKEIHCRFLRNGGWRDVVVE-SALVDLYAKCGAVDYA 394

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL-----KPDCHLSYV 290
             + E +  R ++  W  ++G     +N H AER      ++     +PD ++S++
Sbjct: 395 CRVFEASSVR-NTITWNAMIGGFA--QNGH-AERAINLFNQMVREGARPD-YISFI 445



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 9/226 (3%)

Query: 42  RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE------IDLFSFGIVLRACAG 95
           R FD +  ++ V+ S++L  + + G     ++  R M         +  +    ++ACA 
Sbjct: 92  RAFDDLPHRDVVAHSSILAAFLRAGLPRRALQSLRSMLAGADGVFPNAHALSAAVKACAV 151

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
           L    +G  VH   + R    D I+ SALVD+Y        A + F +M   + I + S+
Sbjct: 152 LRDRNVGACVHGVILVRGYADDDIVLSALVDMYGHTASPGDARKAFEEMCTPDGICYTSL 211

Query: 156 ISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY 214
           IS F +N   EEA+R F  M T  G +PD  +F  +++A  ++    +G +  A +    
Sbjct: 212 ISAFVRNDWFEEAVRWFRTMVTRNGVEPDGCTFGSMMTALGNLRRARQGSEAHAQVVTRG 271

Query: 215 RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
                I   +  +D+  + G++ EA  + +    R+  S W  LLG
Sbjct: 272 LCGSVIVE-SSTLDMYAKCGMMLEARRVFDEMQVRNAVS-WSALLG 315


>gi|242093560|ref|XP_002437270.1| hypothetical protein SORBIDRAFT_10g023920 [Sorghum bicolor]
 gi|241915493|gb|EER88637.1| hypothetical protein SORBIDRAFT_10g023920 [Sorghum bicolor]
          Length = 597

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/331 (57%), Positives = 252/331 (76%), Gaps = 2/331 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R +QG+E HA+V+T GLCGNV+VESS +DMY KCG++ ++ +VFD+M  +N+VS  ALL 
Sbjct: 263 RARQGREAHAQVVTRGLCGNVIVESSTLDMYAKCGMMVDARKVFDRMKVRNAVSWCALLG 322

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ+G  E V+ +FR+M  E+ D +SFG +LR+C+GL+A++LGKE+HC+++R  GC+DV
Sbjct: 323 GYCQSGMHEKVLSLFRQMYMEDDDWYSFGTLLRSCSGLSAVKLGKEIHCRFMRMRGCRDV 382

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           I+ESALVDLYAKCG V++A+++F +  VRN+ITWN+MI G AQNG  E A+ +F++M   
Sbjct: 383 IVESALVDLYAKCGVVEYAYRVFERSSVRNMITWNAMICGCAQNGHAERAISLFNEMLRE 442

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KPD++SFIGVL ACSH G+++ GR +F SM+K Y I P IEHYNC+VDLL R   LEE
Sbjct: 443 GVKPDYISFIGVLFACSHTGMVEEGRNYFNSMSKVYGIPPGIEHYNCIVDLLSRVEFLEE 502

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE L+  +  R DSSLW  +LGAC T  N  VA RVAKK+MEL+P  HLSYVLL+NVYR 
Sbjct: 503 AEDLVNKSPFRDDSSLWAAILGACATHTNPDVAVRVAKKMMELEPHFHLSYVLLENVYRT 562

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           +GRW DA ++R +MK   VKK  G S I  N
Sbjct: 563 IGRWEDAVEVRRVMKSRKVKKEAGTSRIGVN 593



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 152/299 (50%), Gaps = 18/299 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VH  V+  G   + VV S+LVDMYG  G   ++ R F++M   + +  ++L+  
Sbjct: 162 LRAGACVHGTVVVRGYGDDGVVLSALVDMYGHSGAPGDARRAFEEMRAPDGICYTSLISA 221

Query: 62  YCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           + +   F   +  FR M   D       +FG V+ A   L   R G+E H Q + R  C 
Sbjct: 222 FVRNDWFNEALLWFRAMVVADGVWPDGCTFGSVMTALGNLKRARQGREAHAQVVTRGLCG 281

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +VI+ES+ +D+YAKCG +  A ++F +M VRN ++W +++ G+ Q+G  E+ L +F  M 
Sbjct: 282 NVIVESSTLDMYAKCGMMVDARKVFDRMKVRNAVSWCALLGGYCQSGMHEKVLSLFRQMY 341

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                 D  SF  +L +CS +  +  G++      +    +  I   + +VDL  + G++
Sbjct: 342 M--EDDDWYSFGTLLRSCSGLSAVKLGKEIHCRFMRMRGCRDVIVE-SALVDLYAKCGVV 398

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL-----KPDCHLSYV 290
           E A  + E +  R+  + W  ++  C   +N H AER      E+     KPD ++S++
Sbjct: 399 EYAYRVFERSSVRNMIT-WNAMICGCA--QNGH-AERAISLFNEMLREGVKPD-YISFI 452



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 14/252 (5%)

Query: 42  RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE------------IDLFSFGIV 89
           + FD + +++ V+ S++L  + + G     +   R M                  +    
Sbjct: 93  KAFDDLPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMASGGCGTDDDDDVAPRAHALSAS 152

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
            +ACA L  LR G  VH   + R    D ++ SALVD+Y   G    A + F +M   + 
Sbjct: 153 AKACAVLRDLRAGACVHGTVVVRGYGDDGVVLSALVDMYGHSGAPGDARRAFEEMRAPDG 212

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEG-GTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           I + S+IS F +N    EAL  F  M    G  PD  +F  V++A  ++    +GR+  A
Sbjct: 213 ICYTSLISAFVRNDWFNEALLWFRAMVVADGVWPDGCTFGSVMTALGNLKRARQGREAHA 272

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            +         I   + + D+  + G++ +A  + +    R+  S   +L G C +  + 
Sbjct: 273 QVVTRGLCGNVIVESSTL-DMYAKCGMMVDARKVFDRMKVRNAVSWCALLGGYCQSGMHE 331

Query: 269 HVAERVAKKIME 280
            V     +  ME
Sbjct: 332 KVLSLFRQMYME 343


>gi|242096754|ref|XP_002438867.1| hypothetical protein SORBIDRAFT_10g027503 [Sorghum bicolor]
 gi|241917090|gb|EER90234.1| hypothetical protein SORBIDRAFT_10g027503 [Sorghum bicolor]
          Length = 610

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/322 (58%), Positives = 248/322 (77%), Gaps = 2/322 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R +QG+E HA+V+T GLCGNV+VESS +DMY KCG++ ++ +VFD+M  +N+VS  ALL 
Sbjct: 261 RARQGREAHAQVLTRGLCGNVIVESSTLDMYAKCGMMVDAQKVFDRMKVRNAVSWCALLG 320

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           GYCQ+G  E V+ +FR+M  E+ D +S G +LR+CAGL+A++LGKE+HC+++R  GC DV
Sbjct: 321 GYCQSGKHEMVLSLFRQMYTEDDDWYSLGTLLRSCAGLSAVKLGKEIHCRFMRMRGCGDV 380

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           I+ESALVDLYAKCG V++A+++F +  VRN+ITWN+MI G AQNG GE A+ +FD+M   
Sbjct: 381 IVESALVDLYAKCGAVEYAYRVFRRSSVRNMITWNAMICGCAQNGHGERAISLFDEMVRE 440

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             KPD+VSFIGVL ACSH G+++ GR +F SM+K+Y I P IEHYNC+VDLL R  LLEE
Sbjct: 441 EVKPDYVSFIGVLFACSHTGMVEEGRNYFNSMSKDYGIPPGIEHYNCIVDLLSRVELLEE 500

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE L+  +  R DSSLW  +LGAC T  N  VA RVAKK+MEL+P  HLSYVLL+NVYR 
Sbjct: 501 AEDLVNKSQFRDDSSLWAAILGACATHTNPDVAVRVAKKMMELEPQYHLSYVLLENVYRT 560

Query: 299 VGRWNDAFKIRTLMKYSGVKKM 320
           +GRW DA ++R LMK   + K+
Sbjct: 561 IGRWEDAVEVRRLMKSRKILKL 582



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 151/297 (50%), Gaps = 14/297 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VH   +  G   + VV S+LVDMYG  G   ++ R F++M   + +  ++L+  
Sbjct: 160 LRAGACVHGTTVVRGYADDGVVLSALVDMYGHSGAPGDARRAFEEMRAPDGICYTSLISA 219

Query: 62  YCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           + +   F+  +R F+ M   D       +FG ++ A   L   R G+E H Q + R  C 
Sbjct: 220 FVRNDWFDEALRWFQAMLATDGVYPDGCTFGSMMTALGNLKRARQGREAHAQVLTRGLCG 279

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM- 175
           +VI+ES+ +D+YAKCG +  A ++F +M VRN ++W +++ G+ Q+G+ E  L +F  M 
Sbjct: 280 NVIVESSTLDMYAKCGMMVDAQKVFDRMKVRNAVSWCALLGGYCQSGKHEMVLSLFRQMY 339

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           TE     D  S   +L +C+ +  +  G++      +       I   + +VDL  + G 
Sbjct: 340 TE---DDDWYSLGTLLRSCAGLSAVKLGKEIHCRFMRMRGCGDVIVE-SALVDLYAKCGA 395

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCHLSYV 290
           +E A  +   +  R+  + W  ++  C    +   A  +  +++  E+KPD ++S++
Sbjct: 396 VEYAYRVFRRSSVRNMIT-WNAMICGCAQNGHGERAISLFDEMVREEVKPD-YVSFI 450



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 110/241 (45%), Gaps = 14/241 (5%)

Query: 42  RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----------IDLFSFGIVLR 91
           R FD + +++ V+ S++L  + + G     +   R M                +     +
Sbjct: 93  RAFDDLPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMAAGGYGADDDVAPSAHALSASAK 152

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
           ACA L  LR G  VH   + R    D ++ SALVD+Y   G    A + F +M   + I 
Sbjct: 153 ACAVLRDLRAGACVHGTTVVRGYADDGVVLSALVDMYGHSGAPGDARRAFEEMRAPDGIC 212

Query: 152 WNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFAS 209
           + S+IS F +N   +EALR F  M    G  PD  +F  +++A  ++    +GR+ H   
Sbjct: 213 YTSLISAFVRNDWFDEALRWFQAMLATDGVYPDGCTFGSMMTALGNLKRARQGREAHAQV 272

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           +T+       +E  +  +D+  + G++ +A+ + +    R+  S   +L G C + ++  
Sbjct: 273 LTRGLCGNVIVE--SSTLDMYAKCGMMVDAQKVFDRMKVRNAVSWCALLGGYCQSGKHEM 330

Query: 270 V 270
           V
Sbjct: 331 V 331


>gi|255553863|ref|XP_002517972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542954|gb|EEF44490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 483

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 158/197 (80%), Positives = 173/197 (87%), Gaps = 1/197 (0%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RLKQGKEVHAK+IT G  GNVVVESSLVDMYGKCGLVDES RVFD+M  KNSVS SALL 
Sbjct: 270 RLKQGKEVHAKLITSGFSGNVVVESSLVDMYGKCGLVDESQRVFDRMSVKNSVSWSALLG 329

Query: 61  GYCQTGDFESVIRIFREMEEID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           G+CQ GDFESVIRIFREM E D L+SFG VLRACAGLAA+R GKEVHCQY+RR G +DVI
Sbjct: 330 GFCQNGDFESVIRIFREMGEADDLYSFGTVLRACAGLAAVRQGKEVHCQYVRRGGWRDVI 389

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           IESALVDLYAKCGC+DFAH+IF +M VRNLITWNSMI GFAQNG  EEALRIFD+M + G
Sbjct: 390 IESALVDLYAKCGCIDFAHRIFTKMTVRNLITWNSMICGFAQNGWAEEALRIFDEMVKEG 449

Query: 180 TKPDHVSFIGVLSACSH 196
           TKPD+++FIGVL ACSH
Sbjct: 450 TKPDYITFIGVLFACSH 466



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 141/254 (55%), Gaps = 9/254 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK  H  ++  G   N V+ S+L+D+YG+   +D++ R+FD++L+ +++  ++++  
Sbjct: 169 LMLGKCFHCVIMIRGFHSNHVIGSALIDLYGRNYELDDARRLFDELLEPDAICWTSVISA 228

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y +   ++  +  F  M+       D F+FG VL AC  L  L+ GKEVH + I      
Sbjct: 229 YTRNDMYDKALGFFYLMQRKLGLAPDGFTFGTVLTACGNLRRLKQGKEVHAKLITSGFSG 288

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V++ES+LVD+Y KCG VD + ++F +M V+N ++W++++ GF QNG  E  +RIF +M 
Sbjct: 289 NVVVESSLVDMYGKCGLVDESQRVFDRMSVKNSVSWSALLGGFCQNGDFESVIRIFREM- 347

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G   D  SF  VL AC+ +  + +G++      +    +  I   + +VDL  + G +
Sbjct: 348 --GEADDLYSFGTVLRACAGLAAVRQGKEVHCQYVRRGGWRDVIIE-SALVDLYAKCGCI 404

Query: 237 EEAETLIENADCRH 250
           + A  +      R+
Sbjct: 405 DFAHRIFTKMTVRN 418



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 142/267 (53%), Gaps = 10/267 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQ 60
              G ++HA V+  GL  +  V +SL+ +Y K      E+ RVFD +  ++ +S ++++ 
Sbjct: 67  FNHGLQIHAHVVKSGLETDRFVGNSLLALYFKLSTDFFETRRVFDGLYFRDVISWTSMIT 126

Query: 61  GYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY +    +  + +F EM ++    + F+   V++AC  L  L LGK  HC  + R    
Sbjct: 127 GYVKGEKPKKALDLFWEMLDVGVDPNAFTLSAVIKACTDLGTLMLGKCFHCVIMIRGFHS 186

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + +I SAL+DLY +   +D A ++F ++   + I W S+IS + +N   ++AL  F  M 
Sbjct: 187 NHVIGSALIDLYGRNYELDDARRLFDELLEPDAICWTSVISAYTRNDMYDKALGFFYLMQ 246

Query: 177 EG-GTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G  PD  +F  VL+AC ++  + +G++ H   +T  +     +E  + +VD+ G+ G
Sbjct: 247 RKLGLAPDGFTFGTVLTACGNLRRLKQGKEVHAKLITSGFSGNVVVE--SSLVDMYGKCG 304

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
           L++E++ + +    ++  S W  LLG 
Sbjct: 305 LVDESQRVFDRMSVKNSVS-WSALLGG 330


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  306 bits (785), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 148/332 (44%), Positives = 213/332 (64%), Gaps = 4/332 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K VH  +I  G     +V ++LVDMY K G +D ++ VF+KML+K+ +S ++L+ GY Q 
Sbjct: 384 KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQN 443

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
              E  ++IF +M       D F    +L ACA L  L  GK+VH  +I+        + 
Sbjct: 444 NSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVY 503

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++LV +YAKCGC+D A  IF+ M V+++ITW ++I G+AQNG+G  +L+ +D M   GT+
Sbjct: 504 NSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTR 563

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD ++FIG+L ACSH GL+D GRK+F  M K Y IKP  EHY CM+DL GR+G L+EA+ 
Sbjct: 564 PDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQ 623

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L++  D + D+++W+ LL AC    N  +AER A  + EL+P   + YV+L N+Y A  +
Sbjct: 624 LLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRK 683

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           WND  KIR LMK  G+ K PG SW+E NS++N
Sbjct: 684 WNDVAKIRKLMKSKGIVKEPGCSWLEINSRVN 715



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 136/253 (53%), Gaps = 17/253 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KKNSVSSSALL 59
           ++ G+ +H  V+  G  GNV V + LVDMY KC  V E+  +F  +   +KN V  +A++
Sbjct: 178 IQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMV 237

Query: 60  QGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY Q GD    +  FR M     E + ++F  +L AC+ + A   G++VH   ++    
Sbjct: 238 TGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFG 297

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +V ++SALVD+YAKCG +  A  +   M   ++++WNS++ GF ++G  EEALR+F +M
Sbjct: 298 SNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNM 357

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLG 231
                K D  +F  VL+ C  +G I+    H         IK   E+Y    N +VD+  
Sbjct: 358 HGRNMKIDDYTFPSVLNCCV-VGSINPKSVH------GLIIKTGFENYKLVSNALVDMYA 410

Query: 232 RAGLLEEAETLIE 244
           + G ++ A T+ E
Sbjct: 411 KTGDMDCAYTVFE 423



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 123/241 (51%), Gaps = 8/241 (3%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----E 80
           ++++  Y   G + E+  +FD    K+S++ S+++ GYC+ G       +FR M     +
Sbjct: 100 NTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWK 159

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
              F+ G VLR C+ L  ++ G+ +H   ++     +V + + LVD+YAKC CV  A  +
Sbjct: 160 ASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFL 219

Query: 141 F--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           F  L+   +N + W +M++G+AQNG G +A+  F  M   G + +  +F  +L+ACS + 
Sbjct: 220 FKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVL 279

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
               G +    + K       +   + +VD+  + G L+ A+ ++E  +   D   W  L
Sbjct: 280 ARCFGEQVHGFIVKS-GFGSNVYVQSALVDMYAKCGDLKNAKNMLETME-DDDVVSWNSL 337

Query: 259 L 259
           +
Sbjct: 338 M 338



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VH   I  GL  +  V +SLV MY KCG +D++  +F  M  K+ ++ +A++ G
Sbjct: 481 LEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVG 540

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G   + ++ +  M       D  +F  +L AC+    +  G++   Q  +  G K 
Sbjct: 541 YAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKP 600

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
                A ++DL+ + G +D A Q+  QM V+ +   W S++S 
Sbjct: 601 GPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSA 643



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 41/172 (23%)

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD---------- 173
           L++  +K G V+ A ++F +MP ++  +WN+MIS +   GR  EA  +FD          
Sbjct: 71  LLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITW 130

Query: 174 ---------------------DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
                                 M   G K    +   VL  CS +GLI  G      M  
Sbjct: 131 SSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGE-----MIH 185

Query: 213 EYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADC-RHDSSLWEVLL 259
            + +K   E        +VD+  +   + EAE L +  +  R +  LW  ++
Sbjct: 186 GFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMV 237


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/364 (41%), Positives = 224/364 (61%), Gaps = 35/364 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK+ H  +I +G   +VVV+++LV MY +CG ++++  VFDKM ++++ + +A++ G
Sbjct: 26  LEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITG 85

Query: 62  YCQTGDFESVIRIFREMEEIDLFSF----------------------------------- 86
           + Q  D +  +++F EM E D+ S+                                   
Sbjct: 86  HAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIM 145

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
           G VL ACA LAAL LG++ H   ++     D+++ SALVD+YAK G ++ A Q+F +MP 
Sbjct: 146 GSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQ 205

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN ++WNS+I+G AQ+GRG +A+ +F+ M + G KP+ +SF+GVLSACSH GL++ GR +
Sbjct: 206 RNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGY 265

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F  MT+ Y I P + HY CM+DLLGRAG L+EAE  I       D S+W  LLGAC    
Sbjct: 266 FNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHG 325

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  +A+R+A+ ++ ++      YVLL N+Y A G+W+DA K+R LMK  GV K PG SWI
Sbjct: 326 NTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWI 385

Query: 327 EANS 330
           E  +
Sbjct: 386 EVKT 389



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 122/240 (50%), Gaps = 36/240 (15%)

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           F+   V++ACA +A+L  GK+ H   I+     DV++++ALV +YA+CG ++ A  +F +
Sbjct: 11  FTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDK 70

Query: 144 MPVRNLITWNSMIS-------------------------------GFAQNGRGEEALRIF 172
           M  R+  TWN+MI+                               G+AQNG G+E+L +F
Sbjct: 71  MSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVF 130

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
           + M + G K D      VLSAC+ +  ++ GR+ F +   +      I   + +VD+  +
Sbjct: 131 NQMRKTGMKSDRFIMGSVLSACADLAALELGRQ-FHAYVVQSGFALDIVVGSALVDMYAK 189

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
           +G +E+A  + +    R++ S W  ++  C      + A  + +++++  +KP+  +S+V
Sbjct: 190 SGSMEDACQVFDKMPQRNEVS-WNSIITGCAQHGRGNDAVLLFEQMLQAGIKPN-EISFV 247


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 143/336 (42%), Positives = 219/336 (65%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK+ H  ++ LG    V V+S+LVDMY KCG + ++   F++  + + V  +A++ G
Sbjct: 337 LMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTG 396

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G+FE  + ++  M++  +F    +   +LRACAGLAAL  GK++H Q ++      
Sbjct: 397 HVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLG 456

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SAL  +Y+KCG ++    +F +MP R++I WNS+ISGF+QNGRG +A+ +F++M  
Sbjct: 457 ASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKL 516

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GT PD V+FI VL ACSHMGL+DRG  +F SM K+Y + P+++HY CMVD+L RAG+L 
Sbjct: 517 EGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGMLS 576

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE+    H + LW ++LGAC + R+  V     +K+M+L      +Y+LL N+Y 
Sbjct: 577 EAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAYILLSNIYA 636

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A  +WND  ++R LMK  GV K PG SW+E NS+++
Sbjct: 637 AQRKWNDVERVRYLMKLVGVSKDPGCSWVELNSRVH 672



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 121/208 (58%), Gaps = 4/208 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G +VH  V+  G+ G V VE+SLV MY K G +D +  VF+   ++NS++ SA++ G
Sbjct: 236 LPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITG 295

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G+ ES +R+F +M         F+   VL AC+ +  L  GK+ H   ++      
Sbjct: 296 YSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQ 355

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V ++SALVD+YAKCGC+  A + F Q    +++ W +M++G  QNG  E+AL ++  M +
Sbjct: 356 VYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDK 415

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G  P+ ++   +L AC+ +  ++ G++
Sbjct: 416 EGVFPNTLTITSLLRACAGLAALEPGKQ 443



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 134/246 (54%), Gaps = 9/246 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           NV V ++L++MY K GL+ ++  VFD+M  +N VS +A++ GY      +    +FR+M 
Sbjct: 152 NVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQML 211

Query: 79  EEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
            E  L    F    VL A +    L +G +VH   ++      V +E++LV +YAK GC+
Sbjct: 212 GECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCM 271

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           D A  +F     RN ITW++MI+G++QNG  E A+R+F  M   G  P   + +GVL+AC
Sbjct: 272 DAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNAC 331

Query: 195 SHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           S +G +  G++    M K  + ++  ++  + +VD+  + G + +A+    N     D  
Sbjct: 332 SDVGTLMEGKQAHGLMVKLGFEVQVYVK--SALVDMYAKCGCIGDAKECF-NQFSELDIV 388

Query: 254 LWEVLL 259
           LW  ++
Sbjct: 389 LWTAMV 394


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  296 bits (758), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 142/339 (41%), Positives = 217/339 (64%), Gaps = 8/339 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VHA+++   L GN  V ++LVDMY K   ++++  +F++++K++  + + ++ GY Q
Sbjct: 310 GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 369

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  ++ F +M+    + + F+    L  C+ +A L  G+++H   I+     D+ +
Sbjct: 370 DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFV 429

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVD+YAKCGCV+ A  +F  +  R+ ++WN++I G++Q+G+G +AL+ F+ M + GT
Sbjct: 430 ASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 489

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            PD V+FIGVLSACSHMGLI+ G+KHF S++K Y I P IEHY CMVD+LGRAG   E E
Sbjct: 490 VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVE 549

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
           + IE      +  +WE +LGAC    N    ER A K+ EL+P+   +Y+LL N++ A G
Sbjct: 550 SFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKG 609

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSK----LNHD 335
            W+D   +R LM   GVKK PG SW+E N +    L+HD
Sbjct: 610 MWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHD 648



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 153/262 (58%), Gaps = 7/262 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK +H +VI  G+  +  + +SLV++Y KCG  + + +VF ++ +++ VS +AL+ G
Sbjct: 207 LNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITG 266

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G + S +RIF +M       ++++F  +LR+C+ L+ + LGK+VH Q ++ S   +
Sbjct: 267 FVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGN 325

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +ALVD+YAK   ++ A  IF ++  R+L  W  +++G+AQ+G+GE+A++ F  M  
Sbjct: 326 DFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR 385

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+  +    LS CS +  +D GR+   SM  +      +   + +VD+  + G +E
Sbjct: 386 EGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVE 444

Query: 238 EAETLIENADCRHDSSLWEVLL 259
           +AE + +    R D+  W  ++
Sbjct: 445 DAEVVFDGLVSR-DTVSWNTII 465



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 140/261 (53%), Gaps = 7/261 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +HA V   G   ++++ ++ V MY K   V+   + F  M+ +N  S + LL G+C 
Sbjct: 109 GESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCD 168

Query: 65  TGDFES----VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           T   +     +I++  E  E ++++F  +L+ CA    L  GK +H Q I+     D  +
Sbjct: 169 TETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHL 228

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++LV++YAKCG  ++A ++F ++P R++++W ++I+GF   G G   LRIF+ M   G 
Sbjct: 229 WNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGF 287

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+  +FI +L +CS +  +D G++  A + K   +         +VD+  +   LE+AE
Sbjct: 288 NPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN-SLDGNDFVGTALVDMYAKNRFLEDAE 346

Query: 241 TLIENADCRHDSSLWEVLLGA 261
           T+  N   + D   W V++  
Sbjct: 347 TIF-NRLIKRDLFAWTVIVAG 366



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 11/236 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++  +VI  G+C +  + SSLV++Y KC  +  + +V ++M  ++    +  L      
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 66  GDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVH---CQYIRRSGCKDV 118
              +  +++F  M      ++ F F  ++ A A L     G+ +H   C+Y   S   D+
Sbjct: 69  YPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFES---DI 125

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           +I +A V +Y K   V+   Q F  M + NL + N+++SGF      ++  RI   +   
Sbjct: 126 LISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVE 185

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           G +P+  +FI +L  C+  G ++ G+     + K   I P    +N +V++  + G
Sbjct: 186 GFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCG 240



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 10/182 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H+  I  G  G++ V S+LVDMY KCG V+++  VFD ++ +++VS + ++ G
Sbjct: 408 LDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICG 467

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     ++ F  M +     D  +F  VL AC+ +  +  GK+      +  G   
Sbjct: 468 YSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITP 527

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGE----EALRI 171
            I   A +VD+  + G          +M +  N++ W +++     +G  E     A+++
Sbjct: 528 TIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKL 587

Query: 172 FD 173
           F+
Sbjct: 588 FE 589



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 11/174 (6%)

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
           L A  + K++  + I+   C D  + S+LV++Y KC  +  A Q+  +MP++++  WN  
Sbjct: 2   LRAKYILKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQK 61

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215
           +S        +EA+++F  M     + +   F  ++SA + +G    G    A + K Y 
Sbjct: 62  LSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCK-YG 120

Query: 216 IKPKIEHYNCMVDLLGRAGLLEEA-----ETLIENADCRHDSSLWEVLLGACTT 264
            +  I   N  V +  +   +E         +IEN   R++     +L G C T
Sbjct: 121 FESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNN-----LLSGFCDT 169


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 142/339 (41%), Positives = 217/339 (64%), Gaps = 8/339 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VHA+++   L GN  V ++LVDMY K   ++++  +F++++K++  + + ++ GY Q
Sbjct: 551 GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 610

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  ++ F +M+    + + F+    L  C+ +A L  G+++H   I+     D+ +
Sbjct: 611 DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFV 670

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVD+YAKCGCV+ A  +F  +  R+ ++WN++I G++Q+G+G +AL+ F+ M + GT
Sbjct: 671 ASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 730

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            PD V+FIGVLSACSHMGLI+ G+KHF S++K Y I P IEHY CMVD+LGRAG   E E
Sbjct: 731 VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVE 790

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
           + IE      +  +WE +LGAC    N    ER A K+ EL+P+   +Y+LL N++ A G
Sbjct: 791 SFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKG 850

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSK----LNHD 335
            W+D   +R LM   GVKK PG SW+E N +    L+HD
Sbjct: 851 MWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHD 889



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 137/244 (56%), Gaps = 9/244 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK +H +VI  G+  +  + +SLV++Y KCG  + + +VF ++ +++ VS +AL+ G
Sbjct: 144 LNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITG 203

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     + +F EM     E + F++   L+AC+    L  GK+VH + I+     D
Sbjct: 204 FVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSD 263

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + SALVDLYAKCG +  A ++FL MP +N ++WN++++GFAQ G  E+ L +F  MT 
Sbjct: 264 LFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTG 323

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGL 235
                   +   VL  C++ G +  G+      +   RI  +++ +   C+VD+  + GL
Sbjct: 324 SEINFSKFTLSTVLKGCANSGNLRAGQ---IVHSLAIRIGCELDEFISCCLVDMYSKCGL 380

Query: 236 LEEA 239
             +A
Sbjct: 381 AGDA 384



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 145/262 (55%), Gaps = 6/262 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +HA V   G   +  V ++LV MY K G V +  RVF+    ++ +S +ALL G
Sbjct: 447 LYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSG 506

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +      ++ +RIF +M       ++++F  +LR+C+ L+ + LGK+VH Q ++ S   +
Sbjct: 507 FHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGN 566

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +ALVD+YAK   ++ A  IF ++  R+L  W  +++G+AQ+G+GE+A++ F  M  
Sbjct: 567 DFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR 626

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+  +    LS CS +  +D GR+   SM  +      +   + +VD+  + G +E
Sbjct: 627 EGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVE 685

Query: 238 EAETLIENADCRHDSSLWEVLL 259
           +AE + +    R D+  W  ++
Sbjct: 686 DAEVVFDGLVSR-DTVSWNTII 706



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 143/263 (54%), Gaps = 8/263 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VHA+ I +G   ++ V S+LVD+Y KCG +  + RVF  M K+N+VS +ALL G
Sbjct: 245 LEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNG 304

Query: 62  YCQTGDFESVIRIFREM--EEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           + Q GD E V+ +F  M   EI+   F+   VL+ CA    LR G+ VH   IR  GC+ 
Sbjct: 305 FAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIR-IGCEL 363

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  I   LVD+Y+KCG    A ++F+++   ++++W+++I+   Q G+  EA  +F  M 
Sbjct: 364 DEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMR 423

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+  +   ++SA + +G +  G    A + K Y  +      N +V +  + G +
Sbjct: 424 HSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCK-YGFEYDNTVCNALVTMYMKIGSV 482

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           ++   + E A    D   W  LL
Sbjct: 483 QDGCRVFE-ATTNRDLISWNALL 504



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 129/264 (48%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ VH+  I +G   +  +   LVDMY KCGL  ++ +VF ++   + VS SA++  
Sbjct: 346 LRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITC 405

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G       +F+ M       + F+   ++ A   L  L  G+ +H    +     D
Sbjct: 406 LDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYD 465

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +ALV +Y K G V    ++F     R+LI+WN+++SGF  N   +  LRIF+ M  
Sbjct: 466 NTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLA 525

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+  +FI +L +CS +  +D G++  A + K   +         +VD+  +   LE
Sbjct: 526 EGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN-SLDGNDFVGTALVDMYAKNRFLE 584

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           +AET+  N   + D   W V++  
Sbjct: 585 DAETIF-NRLIKRDLFAWTVIVAG 607



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 71/124 (57%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +LR CA    L  GK +H Q I+     D  + ++LV++YAKCG  ++A ++F ++P R+
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +++W ++I+GF   G G  A+ +F +M   G + +  ++   L ACS    ++ G++  A
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253

Query: 209 SMTK 212
              K
Sbjct: 254 EAIK 257



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 10/182 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H+  I  G  G++ V S+LVDMY KCG V+++  VFD ++ +++VS + ++ G
Sbjct: 649 LDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICG 708

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     ++ F  M +     D  +F  VL AC+ +  +  GK+      +  G   
Sbjct: 709 YSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITP 768

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGE----EALRI 171
            I   A +VD+  + G          +M +  N++ W +++     +G  E     A+++
Sbjct: 769 TIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKL 828

Query: 172 FD 173
           F+
Sbjct: 829 FE 830


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  293 bits (751), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 142/331 (42%), Positives = 214/331 (64%), Gaps = 4/331 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +GK+VH  ++ LG    + V ++LVDMY KC  + ++ + FD + + + V  ++++ GY 
Sbjct: 328 EGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYV 387

Query: 64  QTGDFESVIRIF--REMEEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G+ E  + ++   EME I  +  +   VL+AC+ LAAL  GK++H + ++     +V 
Sbjct: 388 QNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVP 447

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I SAL  +YAKCGC+     +F +MP R++I+WN+MISG +QNG G+EAL +F++M   G
Sbjct: 448 IGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEG 507

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           TKPD+V+F+ +LSACSHMGL++RG  +F  M  E+ + P++EHY CMVD+L RAG L+EA
Sbjct: 508 TKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEA 567

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
               E+A   H   LW ++LGAC  +RN  +     +K+MEL      +YVLL ++Y A+
Sbjct: 568 IEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSAL 627

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           GRW D  ++R +MK  GV K PG SWIE  S
Sbjct: 628 GRWEDVERVRRMMKLRGVSKEPGCSWIELKS 658



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 138/260 (53%), Gaps = 6/260 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+  HA  I +  C +V V SSL++MY K GL  E+ +VFD M ++NSVS + ++ GY  
Sbjct: 127 GRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYAS 186

Query: 65  TGDFESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                  + +FR    E E  + F F  VL A      +  GK++HC  ++      V +
Sbjct: 187 QKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSV 246

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV +YAKCG +D A Q F     +N ITW++MI+G+AQ+G  ++AL++F  M   G 
Sbjct: 247 GNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGI 306

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +P   +F+GV++ACS +G    G++    + K    + +I     +VD+  +   + +A 
Sbjct: 307 RPSEFTFVGVINACSDLGAAWEGKQVHDYLLK-LGFESQIYVMTALVDMYAKCSSIVDAR 365

Query: 241 TLIENADCRHDSSLWEVLLG 260
              +      D  LW  ++G
Sbjct: 366 KGFDYLQ-EPDIVLWTSMIG 384



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 138/262 (52%), Gaps = 6/262 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +  GK++H   +  GL   V V ++LV MY KCG +D++ + F+    KNS++ SA++ G
Sbjct: 225 VNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITG 284

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q+GD +  +++F  M    +    F+F  V+ AC+ L A   GK+VH   ++      
Sbjct: 285 YAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQ 344

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALVD+YAKC  +  A + F  +   +++ W SMI G+ QNG  E+AL ++  M  
Sbjct: 345 IYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEM 404

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+ ++   VL ACS +  +++G++  A   K Y    ++   + +  +  + G L+
Sbjct: 405 EGILPNELTMASVLKACSSLAALEQGKQIHARTVK-YGFGLEVPIGSALSTMYAKCGCLK 463

Query: 238 EAETLIENADCRHDSSLWEVLL 259
           +   +      R D   W  ++
Sbjct: 464 DGTLVFRRMPAR-DVISWNAMI 484



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 134/265 (50%), Gaps = 11/265 (4%)

Query: 2   LKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L++GK +HA++I +   C  V + +SLV++Y KC  + E+  VF+++  K+ VS + ++ 
Sbjct: 22  LQKGKALHAQIIKSSSSC--VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIIN 79

Query: 61  GYCQTGDFES--VIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           GY Q G   S  V+ +F+ M       +  +F  V  A + L     G+  H   I+   
Sbjct: 80  GYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDS 139

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
           C+DV + S+L+++Y K G    A ++F  MP RN ++W +MISG+A      EAL +F  
Sbjct: 140 CRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRL 199

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M       +   F  VLSA +   L++ G K    +  +  +   +   N +V +  + G
Sbjct: 200 MRREEEGENEFVFTSVLSALTLPELVNNG-KQIHCIAVKNGLLSIVSVGNALVTMYAKCG 258

Query: 235 LLEEAETLIENADCRHDSSLWEVLL 259
            L++A    E +  + +S  W  ++
Sbjct: 259 SLDDALQTFETSSDK-NSITWSAMI 282



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 4/105 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK++HA+ +  G    V + S+L  MY KCG + +   VF +M  ++ +S +A++ G
Sbjct: 427 LEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISG 486

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLG 102
             Q G  +  + +F EM+    + D  +F  +L AC+ +  +  G
Sbjct: 487 LSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERG 531


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 142/327 (43%), Positives = 210/327 (64%), Gaps = 4/327 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+++H   I  G   N VV ++LV+MY KCG V+ ++++F++M KKN V+ +A++ G
Sbjct: 338 LEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISG 397

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F EM+    + D F+   VL ACA   AL  GK++H   IR     +
Sbjct: 398 YSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESN 457

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V++ + LVD+YAKCG V+ A ++F +MP +++++W +MI  +  +G GE+AL +F  M E
Sbjct: 458 VVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQE 517

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GTK DH++F  +L+ACSH GL+D+G ++F  M  +Y + PK+EHY C+VDLLGRAG L+
Sbjct: 518 TGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLD 577

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  +I+N     D+++W  LLGAC    N  + E+ AK + EL PD    YVLL N+Y 
Sbjct: 578 EANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYA 637

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKS 324
              RW D  K+R +MK  GVKK PG S
Sbjct: 638 EAQRWEDVAKLRKMMKEKGVKKQPGCS 664



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 164/293 (55%), Gaps = 16/293 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VH  +I  G   +V+V ++L  MY KCG ++ + +VFD+M K++ VS +A++ G
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAG 195

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F EM+    + +  +   V+  CA L AL  GK++HC  IR     D
Sbjct: 196 YSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESD 255

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V++ + LV++YAKCG V+ AH++F +MP+R++ +WN++I G++ N +  EAL  F+ M  
Sbjct: 256 VLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQV 315

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRA 233
            G KP+ ++ + VL AC+H+  +++G++        Y I+   E      N +V++  + 
Sbjct: 316 RGIKPNSITMVSVLPACAHLFALEQGQQ-----IHGYAIRSGFESNDVVGNALVNMYAKC 370

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH--VAERVAKKIMELKPD 284
           G +  A  L E    + +   W  ++   +   + H  +A  +  +   +KPD
Sbjct: 371 GNVNSAYKLFERMP-KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPD 422



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 150/268 (55%), Gaps = 14/268 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK++H   I  G+  +V+V + LV+MY KCG V+ +H++F++M  ++  S +A++ G
Sbjct: 237 LEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGG 296

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y         +  F  M+    + +  +   VL ACA L AL  G+++H   IR     +
Sbjct: 297 YSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESN 356

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ +ALV++YAKCG V+ A+++F +MP +N++ WN++ISG++Q+G   EAL +F +M  
Sbjct: 357 DVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQA 416

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRA 233
            G KPD  + + VL AC+H   +++G++        Y I+   E        +VD+  + 
Sbjct: 417 QGIKPDSFAIVSVLPACAHFLALEQGKQ-----IHGYTIRSGFESNVVVGTGLVDIYAKC 471

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGA 261
           G +  A+ L E      D   W  ++ A
Sbjct: 472 GNVNTAQKLFERMP-EQDVVSWTTMILA 498



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 125/232 (53%), Gaps = 14/232 (6%)

Query: 48  LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGK 103
           ++ N+V     + GY + G +   +R++ +M+      D   F  V++AC   + L+ G+
Sbjct: 81  IRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGR 140

Query: 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           +VH   I R    DVI+ +AL  +Y KCG ++ A Q+F +MP R++++WN++I+G++QNG
Sbjct: 141 KVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNG 200

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH- 222
           +  EAL +F +M   G KP+  + + V+  C+H+  +++G++        Y I+  IE  
Sbjct: 201 QPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQ-----IHCYAIRSGIESD 255

Query: 223 ---YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
               N +V++  + G +  A  L E    R D + W  ++G  +     H A
Sbjct: 256 VLVVNGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIGGYSLNSQHHEA 306


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 142/336 (42%), Positives = 218/336 (64%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++H   +  G    +   ++LVDMY KCG + ++ + FD + + + V  ++++ G
Sbjct: 331 LEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISG 390

Query: 62  YCQTGDFESVIRIF--REMEEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G+ E+ + ++   +ME I     +   VLRAC+ LAAL  GK++H Q I+     +
Sbjct: 391 YAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLE 450

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I SAL  +YAKCG ++  + +F +MP R+++TWN+MISG +QNG G +AL +F+++  
Sbjct: 451 VPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRH 510

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G TKPD+V+F+ VLSACSHMGL++RG+ +F  M  E+ I P++EHY CMVD+L RAG L 
Sbjct: 511 GTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLH 570

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E +  IE+A   H   LW +LLGAC  +RN  +     +K+MEL      +Y+LL ++Y 
Sbjct: 571 ETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYT 630

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A+GR +D  ++R LMK  GV K PG SWIE  S+++
Sbjct: 631 ALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQVH 666



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 147/300 (49%), Gaps = 12/300 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H   +  GL     V ++LV MYGKCG +D++ + F+    K+ ++ SA++ GY Q
Sbjct: 233 GKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQ 292

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD    + +F  M     +   F+F  V+ AC+ + AL  GK++H   ++      +  
Sbjct: 293 AGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYF 352

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVD+YAKCG +  A + F  +   +++ W SMISG+AQNG  E AL ++  M     
Sbjct: 353 MTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERI 412

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P  ++   VL ACS +  +++G K   + T +Y    ++   + +  +  + G LE+  
Sbjct: 413 MPHELTMASVLRACSSLAALEQG-KQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGN 471

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRA 298
            +      R D   W  ++   +       A  + +++     KPD    YV   NV  A
Sbjct: 472 LVFRRMPSR-DIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPD----YVTFVNVLSA 526



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 128/240 (53%), Gaps = 7/240 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G + HA  I      +V V SSL++MY K G + ++ +VFD + ++N+VS + ++ GY  
Sbjct: 132 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 191

Query: 65  TGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                    +F    RE    D F +  VL A      +  GK++HC  ++        +
Sbjct: 192 ERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASV 251

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV +Y KCGC+D A + F     ++ ITW++MI+G+AQ G   EAL +F +M   G 
Sbjct: 252 GNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGN 311

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           KP   +F+GV++ACS +G ++ G++ H  S+   Y    +I     +VD+  + G L +A
Sbjct: 312 KPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYEC--QIYFMTALVDMYAKCGSLVDA 369



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 138/277 (49%), Gaps = 10/277 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK +HA+++  G   +V + +SLV++Y KCG + ++  VF+ +  K+ VS + L+ G
Sbjct: 26  LQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLING 85

Query: 62  YCQTGD--FESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           Y Q G   +  V+ +F+ M   +      +F  V  A +       G + H   I+ S  
Sbjct: 86  YSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNF 145

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + S+L+++Y K GC+  A ++F  +P RN ++W ++ISG+A      EA  +F  M
Sbjct: 146 YDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLM 205

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
                  D   +  VLSA +   L+  G++ H  ++         +   N +V + G+ G
Sbjct: 206 RREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVG--NALVTMYGKCG 263

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
            L++A    E +  + D + W  ++       ++H A
Sbjct: 264 CLDDALKTFELSGDKDDIT-WSAMITGYAQAGDSHEA 299



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 2/113 (1%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           SF  +L  C     L+ GK +H Q +R      V + ++LV+LYAKCG +  A  +F  +
Sbjct: 12  SFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESI 71

Query: 145 PVRNLITWNSMISGFAQNGRGEEA--LRIFDDMTEGGTKPDHVSFIGVLSACS 195
             +++++WN +I+G++Q G    +  + +F  M    T P+  +F GV +A S
Sbjct: 72  TNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAAS 124


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  291 bits (745), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 217/336 (64%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+++HA+    G   ++ + ++LV +Y +CG + E++  F+K+  K+S+S + L+ G
Sbjct: 532 LNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISG 591

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G  E  +++F +M     E   F+FG  + A A +A ++ GK++H   I+R    D
Sbjct: 592 FAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSD 651

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+  YAKCG ++ A + F +MP +N ++WN+MI+G++Q+G G EA+ +F+ M +
Sbjct: 652 IEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQ 711

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+HV+F+GVLSACSH+GL+ +G  +F SM+KE+ + PK  HY C+VDL+ RAG L 
Sbjct: 712 VGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLS 771

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A   IE      D+++W  LL ACT  +N  V E  A+ ++EL+P+   +YVLL N+Y 
Sbjct: 772 RARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYA 831

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W+   + R +M+  GVKK PG+SWIE  + ++
Sbjct: 832 VSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVH 867



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 133/242 (54%), Gaps = 5/242 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H +VI  G   NV V S L+DMY K G +D +H +   + + + VS +AL+ G
Sbjct: 431 LDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISG 490

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q   F   ++ F+EM     + D   F   + ACAG+ AL  G+++H Q       +D
Sbjct: 491 YAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSED 550

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I +ALV LYA+CG +  A+  F ++  ++ I+WN +ISGFAQ+G  E+AL++F  M  
Sbjct: 551 LSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNR 610

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +    +F   +SA +++  I +G++  A + K       IE  N ++    + G +E
Sbjct: 611 AKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKR-GFDSDIEVSNALITFYAKCGSIE 669

Query: 238 EA 239
           +A
Sbjct: 670 DA 671



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 144/263 (54%), Gaps = 8/263 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++H+ VI  G+  +++VE +L+D+Y  C  +  +H +F     +N V  + +L  
Sbjct: 330 LCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVA 389

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + +  +     RIFR+M+   L    F++  +LR C  + AL LG+++H Q I+     +
Sbjct: 390 FGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFN 449

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S L+D+YAK G +D AH I   +   ++++W ++ISG+AQ+    EAL+ F +M  
Sbjct: 450 VYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLN 509

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G + D++ F   +SAC+ +  +++GR+ H  S    Y     I   N +V L  R G +
Sbjct: 510 RGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIG--NALVSLYARCGRI 567

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           +EA    E  D + DS  W  L+
Sbjct: 568 KEAYLEFEKIDAK-DSISWNGLI 589



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 145/285 (50%), Gaps = 7/285 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++  +++HA++I  GL  + ++ + L+ +Y K GL+  + +VFD +  K+SVS  A++ G
Sbjct: 128 IRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISG 187

Query: 62  YCQTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  E  I +F EM    +F     F  VL  C  +    +G+++H    +     +
Sbjct: 188 FSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLE 247

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +ALV LY++      A ++F +M  ++ +++NS+ISG AQ G  + AL +F  M  
Sbjct: 248 TYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKR 307

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+   +LSAC+  G + +G +  + + K   I   +     ++DL      ++
Sbjct: 308 DYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKA-GISSDMIVEGALLDLYVNCSDIK 366

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
            A  +   A    +  LW V+L A     N   + R+ ++ M++K
Sbjct: 367 TAHEMFLTAQTE-NVVLWNVMLVAFGKLDNLSESFRIFRQ-MQIK 409



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 143/292 (48%), Gaps = 11/292 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L + K++H K++ LG     V+ + LVD+Y   G +D   +VF+ M  ++  S   ++ G
Sbjct: 26  LVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISG 85

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAG-LAALRLGKEVHCQYIRRSGCK 116
           + +      V+ +F  M E ++     SF  VLRAC+G    +R  +++H + I      
Sbjct: 86  FMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLC 145

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             II + L+ LYAK G +  A ++F  +  ++ ++W +MISGF+QNG  EEA+ +F +M 
Sbjct: 146 SPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMH 205

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAG 234
             G  P    F  VLS C+ + L D G +  A +   ++    +E Y  N +V L  R  
Sbjct: 206 TAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALV---FKYGSSLETYVCNALVTLYSRMP 262

Query: 235 LLEEAETLIENADCRHDSSLWEVLLG-ACTTFRNAHVAERVAKKIMELKPDC 285
               AE +      + + S   ++ G A   F +  +      K   LKPDC
Sbjct: 263 NFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDC 314



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 10/261 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA V   G      V ++LV +Y +      + +VF KM  K+ VS ++L+ G  Q
Sbjct: 232 GEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQ 291

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  + +F +M+    + D  +   +L ACA   AL  G+++H   I+     D+I+
Sbjct: 292 QGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIV 351

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           E AL+DLY  C  +  AH++FL     N++ WN M+  F +     E+ RIF  M   G 
Sbjct: 352 EGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGL 411

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC--MVDLLGRAGLLEE 238
            P+  ++  +L  C+ +G +D G +     T+  +   +   Y C  ++D+  + G L+ 
Sbjct: 412 IPNQFTYPSILRTCTSVGALDLGEQ---IHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDT 468

Query: 239 AETLIENADCRHDSSLWEVLL 259
           A  ++       D   W  L+
Sbjct: 469 AHVILRTLT-EDDVVSWTALI 488



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 5/173 (2%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L  C    +L   K++H + ++     + ++ + LVD+Y   G +D   ++F  MP R+
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRS 75

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS--HMGLIDRGRKH 206
           + +W+ +ISGF +       L +F  M E    P  +SF  VL ACS   +G+    + H
Sbjct: 76  VRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIH 135

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
              +       P I   N ++ L  + GL+  A  + +N  C  DS  W  ++
Sbjct: 136 ARIICHGLLCSPIIS--NPLIGLYAKNGLIISARKVFDNL-CTKDSVSWVAMI 185


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  290 bits (743), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 137/316 (43%), Positives = 202/316 (63%), Gaps = 4/316 (1%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-- 79
           +V ++LVDMY K G  D +  VF+KM  K+ +S ++L+ G    G +E  +R+F EM   
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 80  --EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
               D      VL ACA L  L  GK+VH  +++      + ++++LV +YAKCGC++ A
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
           +++F  M ++++ITW ++I G+AQNGRG E+L  ++BM   G KPD ++FIG+L ACSH 
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
           GL++ GR +F SM + Y IKP  EHY CM+DLLGR+G L EA+ L+     + D+++W+ 
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 242

Query: 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
           LL AC    N  + ER A  + EL+P   + YVLL N+Y A G+W +A K R LMK  GV
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 318 KKMPGKSWIEANSKLN 333
            K PG SWIE +SK++
Sbjct: 303 SKEPGCSWIEMSSKVH 318



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 93/182 (51%), Gaps = 6/182 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VHA  +  GL  ++ V++SLV MY KCG ++++++VFD M  ++ ++ +AL+ G
Sbjct: 84  LEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVG 143

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +  + +M     + D  +F  +L AC+    +  G+          G K 
Sbjct: 144 YAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKP 203

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
                A ++DL  + G +  A ++  QM V+ +   W ++++    +G  E   R  +++
Sbjct: 204 GPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNL 263

Query: 176 TE 177
            E
Sbjct: 264 FE 265


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 218/336 (64%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+++HA+    G   ++ + ++LV +Y +CG   +++  F+K+  K+++S +AL+ G
Sbjct: 532 LNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISG 591

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G  E  +++F +M     E +LF+FG  + A A  A ++ GK++H   I+     +
Sbjct: 592 FAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSE 651

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               + L+ LY+KCG ++ A + F +MP +N+++WN+MI+G++Q+G G EA+ +F++M +
Sbjct: 652 TEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQ 711

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+HV+F+GVLSACSH+GL++ G  +F SM+KE+ + PK EHY C+VDLLGRA LL 
Sbjct: 712 LGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLC 771

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A   IE      D+ +W  LL ACT  +N  + E  A+ ++EL+P+   +YVLL N+Y 
Sbjct: 772 CAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYA 831

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W+   + R +MK  GVKK PG+SWIE  + ++
Sbjct: 832 VSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIH 867



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 176/329 (53%), Gaps = 14/329 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H +VI  G   NV V S L+DMY K G +D +  +  ++ +++ VS +A++ G
Sbjct: 431 LDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAG 490

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q   F   +++F+EME      D   F   + ACAG+ AL  G+++H Q       +D
Sbjct: 491 YTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSED 550

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I +ALV LYA+CG    A+  F ++  ++ I+WN++ISGFAQ+G  EEAL++F  M +
Sbjct: 551 LSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQ 610

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + +  +F   +SA ++   I +G++  A M K      + E  N ++ L  + G +E
Sbjct: 611 AGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKT-GYDSETEASNVLITLYSKCGSIE 669

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA----KKIMELKPDCHLSYVLLD 293
           +A+        ++  S W  ++   +  ++ + +E V+     K + L P+ H+++V + 
Sbjct: 670 DAKREFFEMPEKNVVS-WNAMITGYS--QHGYGSEAVSLFEEMKQLGLMPN-HVTFVGVL 725

Query: 294 NVYRAVGRWNDAFK-IRTLMKYSGVKKMP 321
           +    VG  N+     R++ K  G+   P
Sbjct: 726 SACSHVGLVNEGLSYFRSMSKEHGLVPKP 754



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 143/261 (54%), Gaps = 8/261 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +GK++H+ VI +G+  ++++E SL+D+Y KC  ++ +H  F     +N V  + +L  Y 
Sbjct: 332 KGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYG 391

Query: 64  QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G+      IF +M+   L    +++  +LR C  L AL LG+++H Q I+     +V 
Sbjct: 392 QLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVY 451

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + S L+D+YAK G +D A  I  ++   ++++W +MI+G+ Q+    EAL++F +M   G
Sbjct: 452 VCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQG 511

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            + D++ F   +SAC+ +  +++G++ H  S    Y     I   N +V L  R G  ++
Sbjct: 512 IRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIG--NALVSLYARCGRAQD 569

Query: 239 AETLIENADCRHDSSLWEVLL 259
           A    E  D + + S W  L+
Sbjct: 570 AYLAFEKIDAKDNIS-WNALI 589



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 135/268 (50%), Gaps = 10/268 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K G+++H  ++  GL     V ++LV +Y + G +  + ++F KM +++ +S ++L+ G
Sbjct: 229 FKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISG 288

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  +  +++F +M+    + D  +   +L ACA + A   GK++H   I+     D
Sbjct: 289 LAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSD 348

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +IIE +L+DLY KC  ++ AH+ FL     N++ WN M+  + Q G   E+  IF  M  
Sbjct: 349 LIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQI 408

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC--MVDLLGRAGL 235
            G  P+  ++  +L  C+ +G +D G +    + K      +   Y C  ++D+  + G 
Sbjct: 409 EGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKS---GFQFNVYVCSVLIDMYAKHGE 465

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACT 263
           L+ A  +++      D   W  ++   T
Sbjct: 466 LDTARGILQRLR-EEDVVSWTAMIAGYT 492



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 120/204 (58%), Gaps = 4/204 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++HAK+I  G   + +V + L+D+Y K G VD +  VF+++  K+SVS  A++ G  Q 
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQN 191

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  +  I +F +M +  +    + F  VL AC  +   +LG+++H   ++     +  + 
Sbjct: 192 GREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVC 251

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALV LY++ G +  A QIF +M  R+ I++NS+ISG AQ G  + AL++F+ M     K
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMK 311

Query: 182 PDHVSFIGVLSACSHMGLIDRGRK 205
           PD V+   +LSAC+ +G   +G++
Sbjct: 312 PDCVTVASLLSACASVGAGYKGKQ 335



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 142/290 (48%), Gaps = 7/290 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K++HA++   G  G  V+ S L+D+Y   G VD + ++FD +   N    + ++ G
Sbjct: 26  LLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISG 85

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAG-LAALRLGKEVHCQYIRRSGCK 116
                    V+ +F  M  E +  D  +F  VLRAC+G  A  ++ +++H + I      
Sbjct: 86  LLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGS 145

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             ++ + L+DLY+K G VD A  +F ++ +++ ++W +MISG +QNGR +EA+ +F  M 
Sbjct: 146 SPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMH 205

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +    P    F  VLSAC+ + L   G +    + K + +  +    N +V L  R G L
Sbjct: 206 KSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVK-WGLSSETFVCNALVTLYSRWGNL 264

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDC 285
             AE +      R   S   ++ G      +    +   K  ++ +KPDC
Sbjct: 265 IAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDC 314



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 19/184 (10%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +   C    +L   K++H +  +     + ++ S L+D+Y   G VD A ++F  +P  N
Sbjct: 16  LFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSN 75

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +  WN +ISG        + L +F  M      PD  +F  VL ACS       G K   
Sbjct: 76  VSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACS-------GGKAPF 128

Query: 209 SMTKEYRIKPKIEHY---------NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            +T++  I  KI H+         N ++DL  + G ++ A+ + E    + DS  W  ++
Sbjct: 129 QVTEQ--IHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLK-DSVSWVAMI 185

Query: 260 GACT 263
              +
Sbjct: 186 SGLS 189


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  286 bits (733), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 144/336 (42%), Positives = 210/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VH  +I  G    + V ++L+ MY KCG + E+ ++F  +  ++ V+ +A++ G
Sbjct: 314 LEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTG 373

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I +FR M++     D  +F   L +C+  A L+ GK +H Q +      D
Sbjct: 374 YAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLD 433

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V ++SALV +YAKCG +D A  +F QM  RN++ W +MI+G AQ+GR  EAL  F+ M +
Sbjct: 434 VYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKK 493

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+F  VLSAC+H+GL++ GRKHF SM  +Y IKP +EHY+C VDLLGRAG LE
Sbjct: 494 QGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLE 553

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE +I     +   S+W  LL AC    +    ER A+ +++L PD   +YV L N+Y 
Sbjct: 554 EAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYA 613

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GR+ DA K+R +M+   V K PG+SWIE + K++
Sbjct: 614 AAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVH 649



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 151/267 (56%), Gaps = 10/267 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VH ++   GL     V +SLV MY KCG + ++  +FDK+ +KN V+ + L+ G
Sbjct: 213 LQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAG 272

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           Y Q G  +  + +  +M++ ++     ++  +L+ C    AL  GK+VH +YI +SG  +
Sbjct: 273 YAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVH-RYIIQSGYGR 331

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ + +AL+ +Y KCG +  A ++F  +P R+++TW +M++G+AQ G  +EA+ +F  M 
Sbjct: 332 EIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQ 391

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           + G KPD ++F   L++CS    +  G+  H   +   Y +   ++  + +V +  + G 
Sbjct: 392 QQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ--SALVSMYAKCGS 449

Query: 236 LEEAETLIENADCRHDSSLWEVLLGAC 262
           +++A  L+ N     +   W  ++  C
Sbjct: 450 MDDAR-LVFNQMSERNVVAWTAMITGC 475



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 145/264 (54%), Gaps = 10/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+EVHA ++  G+  N  +E++L+ MY KCG + ++ RVFD +  +N VS +A+++ 
Sbjct: 112 LEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEA 171

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           +          + +  M+    + D  +F  +L A      L++G++VH + I ++G + 
Sbjct: 172 FVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHME-IAKAGLEL 230

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + ++LV +YAKCG +  A  IF ++P +N++TW  +I+G+AQ G+ + AL + + M 
Sbjct: 231 EPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQ 290

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           +    P+ +++  +L  C+    ++ G+K H   +   Y    +I   N ++ +  + G 
Sbjct: 291 QAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGY--GREIWVVNALITMYCKCGG 348

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           L+EA  L  +   R D   W  ++
Sbjct: 349 LKEARKLFGDLPHR-DVVTWTAMV 371



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 121/243 (49%), Gaps = 10/243 (4%)

Query: 49  KKNSVSSSALLQGYCQTGDFESVIRIFREM--EEIDLFS--FGIVLRACAGLAALRLGKE 104
           K +++++S  +   C+ G  +  + I   M  +   ++S  F  +L+ CA L +L  G+E
Sbjct: 58  KVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGRE 117

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
           VH   ++     +  +E+ L+ +YAKCG +  A ++F  +  RN+++W +MI  F    +
Sbjct: 118 VHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQ 177

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHY 223
             EA + ++ M   G KPD V+F+ +L+A ++  L+  G+K H         ++P++   
Sbjct: 178 NLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG-- 235

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--EL 281
             +V +  + G + +A+ + +      +   W +L+          VA  + +K+   E+
Sbjct: 236 TSLVGMYAKCGDISKAQVIFDKLP-EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEV 294

Query: 282 KPD 284
            P+
Sbjct: 295 APN 297


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  286 bits (733), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 143/331 (43%), Positives = 215/331 (64%), Gaps = 6/331 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ ++  V   GL GN  + +SLVDMY KCG VD + R+FD+M +++ V+ SA++ G
Sbjct: 241 LELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISG 300

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y Q       + +F EM++ ++     +   +L +CA L AL  GK VH  +I++   K 
Sbjct: 301 YSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHF-FIKKKRMKL 359

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V + +AL+D YAKCG V+ + ++F +MPV+N+++W  +I G A NG+G++AL  F  M 
Sbjct: 360 TVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLML 419

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E   +P+ V+FIGVLSACSH GL+D GR  F SM++++ I+P+IEHY CMVD+LGRAGL+
Sbjct: 420 EKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLI 479

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA   I+N   + ++ +W  LL +C   +N  + E   K+++ L+P     Y+LL N+Y
Sbjct: 480 EEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIY 539

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            +VGRW DA K+R  MK  G+KK PG S IE
Sbjct: 540 ASVGRWEDALKVRGEMKEKGIKKTPGCSLIE 570



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 160/264 (60%), Gaps = 10/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++HA ++  G   +  V+++L+ MY  CG V+ + RVFD+M ++N  + +++  G
Sbjct: 140 LSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAG 199

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y ++G++E V+++F EM E+D+     +   VL AC  LA L LG+ ++ +Y+   G K 
Sbjct: 200 YTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWIN-RYVEEKGLKG 258

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + ++LVD+YAKCG VD A ++F QM  R+++ W++MISG++Q  R  EAL +F +M 
Sbjct: 259 NPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQ 318

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           +    P+ ++ + +LS+C+ +G ++ G+  HF    K+ R+K  +     ++D   + G 
Sbjct: 319 KANIDPNEITMVSILSSCAVLGALETGKWVHF--FIKKKRMKLTVTLGTALMDFYAKCGS 376

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           +E +  +      ++  S W VL+
Sbjct: 377 VESSIEVFGKMPVKNVLS-WTVLI 399



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 132/260 (50%), Gaps = 8/260 (3%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKC--GLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           E+HA +I   L     V  +L++         +D +  +F ++ + +S + + +++G+  
Sbjct: 42  EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTL 101

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                  I +F+EM E     D F+F  +L+ C+ L AL  G+++H   ++        +
Sbjct: 102 KQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFV 161

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           ++ L+ +YA CG V+ A ++F +M  RN+ TWNSM +G+ ++G  EE +++F +M E   
Sbjct: 162 KNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDI 221

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           + D V+ + VL+AC  +  ++ G +      +E  +K        +VD+  + G ++ A 
Sbjct: 222 RFDEVTLVSVLTACGRLADLELG-EWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTAR 280

Query: 241 TLIENADCRHDSSLWEVLLG 260
            L +  D R D   W  ++ 
Sbjct: 281 RLFDQMD-RRDVVAWSAMIS 299


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  286 bits (733), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 135/336 (40%), Positives = 218/336 (64%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+ H  ++ LG    + V+S+LVDMY KCG + ++   FD++ + + V  +A++ G
Sbjct: 231 LAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSG 290

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G+ E  + ++  M++  +     +    LRACAG+AAL  GK++H Q ++      
Sbjct: 291 HVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLG 350

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SAL  +Y+KCG ++    +F ++P R++I WNS+ISGF+QNG G  AL +F++M  
Sbjct: 351 APVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKM 410

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GT PD+++FI +L ACSHMGL+DRG ++F+ MTK+Y + P+++HY CMVD+L RAG+L+
Sbjct: 411 EGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLK 470

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE+    H + LW ++LGAC + R+  V     +++MEL      +Y+LL N+Y 
Sbjct: 471 EAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYA 530

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +  +WND  ++R LM+  GV K PG SW+E NS+++
Sbjct: 531 SQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVH 566



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H  ++  GL   V VE+SLV MY K G +  +  VF+   ++NS++ SA++ G
Sbjct: 130 LLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITG 189

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G+ +S + +F +M         F+F  VL A + L AL +GK+ H   ++      
Sbjct: 190 YAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQ 249

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + ++SALVD+YAKCGC+  A + F Q+   +++ W +M+SG  QNG  EEAL ++  M +
Sbjct: 250 IYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDK 309

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            G  P   +    L AC+ +  ++ G++    + K
Sbjct: 310 EGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 344



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           NV V +SL++MY K G+V ++ RVFD M ++NS S S ++ GY      E    +FR M 
Sbjct: 46  NVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLML 105

Query: 79  ----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
                E   F    VL A +    L +G+++H   ++      V +E++LV +YAK GC+
Sbjct: 106 EECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCM 165

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
             A  +F     RN ITW++MI+G+AQNG  + A+ +F  M   G  P   +F+GVL+A 
Sbjct: 166 GAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNAS 225

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           S +G +  G++    M K    + +I   + +VD+  + G + +A+
Sbjct: 226 SDLGALAVGKQAHGLMVK-LGFEVQIYVKSALVDMYAKCGCIADAK 270



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 7/150 (4%)

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           S   +V + ++L+++Y K G V  A ++F  MP RN  +W++M++G+A     EEA  +F
Sbjct: 42  SAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLF 101

Query: 173 DDMTE--GGTKPDHVSFIGVLSACS-HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
             M E     K + V+   VLSA S  +GL+  G +    + K+  +   +   N +V +
Sbjct: 102 RLMLEECPSEKSEFVA-TAVLSAVSVPLGLL-MGEQMHGLIVKDGLLD-FVSVENSLVTM 158

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             +AG +  A  + E++  R +S  W  ++
Sbjct: 159 YAKAGCMGAAFHVFESSRER-NSITWSAMI 187


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 221/368 (60%), Gaps = 42/368 (11%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFD--------------- 45
           +K G+EVHA+V+ +  L  ++++ ++ VDMY KC  + E+  +FD               
Sbjct: 269 IKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVS 328

Query: 46  ----------------KMLKKNSVSSSALLQGYCQTGDFESVIRIF----REMEEIDLFS 85
                           KM ++N VS +AL+ GY Q G+ E  + +F    RE      ++
Sbjct: 329 GYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYT 388

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIR-----RSGCKD-VIIESALVDLYAKCGCVDFAHQ 139
           F  +L+ACA LA L LG + H   ++     +SG +D + + ++L+D+Y KCGCV+  + 
Sbjct: 389 FANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYL 448

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +M  R+ ++WN+MI GFAQNG G EAL +F +M + G KPDH++ IGVLSAC H G 
Sbjct: 449 VFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGF 508

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           ++ GR +F+SMT+++ + P  +HY CMVDLLGRAG LEEA+++IE    + DS +W  LL
Sbjct: 509 VEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLL 568

Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
            AC   RN  + + VA+K+ E++      YVLL N+Y  +G+W DA  +R LM+  GV K
Sbjct: 569 AACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTK 628

Query: 320 MPGKSWIE 327
            PG SWI+
Sbjct: 629 QPGCSWIK 636



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 37/279 (13%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VHA VI  G    V +++ L+D Y KCG +++  ++FDKM ++N  + ++++ G  + G 
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 68  FESVIRIFREMEEIDL-----------------------------------FSFGIVLRA 92
            +    +FR M E D                                    ++F   L A
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 93  CAGLAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
           C+GL  +  G ++H   I +S C  DV I SALVD+Y+KCG V+ A Q+F +M  RN+++
Sbjct: 162 CSGLNDMNRGVQIH-SLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVS 220

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
           WNS+I+ + QNG   EAL++F  M E   +PD V+   V+SAC+ +  I  G++  A + 
Sbjct: 221 WNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVV 280

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
           K  +++  I   N  VD+  +   ++EA  + ++   R+
Sbjct: 281 KMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 143/278 (51%), Gaps = 41/278 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +G ++H+ +       +V + S+LVDMY KCG V+++ +VFD+M  +N VS ++L+  
Sbjct: 168 MNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITC 227

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y Q G     +++F+ M     E D  +   V+ ACA L+A+++G+EVH + ++    + 
Sbjct: 228 YEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRN 287

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI-------------------------- 150
           D+I+ +A VD+YAKC  +  A  IF  MP+RN+I                          
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMA 347

Query: 151 -----TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG-R 204
                +WN++I+G+ QNG  EEAL +F  +      P H +F  +L AC+ +  +  G +
Sbjct: 348 ERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQ 407

Query: 205 KHFASMTKEYRIKPKIEHY----NCMVDLLGRAGLLEE 238
            H   +   ++ +   E      N ++D+  + G +EE
Sbjct: 408 AHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEE 445



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 35/213 (16%)

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI-------------- 150
           VH   I+     +V I++ L+D YAKCG ++   Q+F +MP RN+               
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 151 -----------------TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
                            TWNSM+SGFAQ+ R EEAL  F  M + G   +  +F   LSA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           CS +  ++RG +   S+  +      +   + +VD+  + G + +A+ + +    R+  S
Sbjct: 162 CSGLNDMNRGVQ-IHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVS 220

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            W  L+        A  A +V + ++E  ++PD
Sbjct: 221 -WNSLITCYEQNGPAVEALKVFQVMLESWVEPD 252


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 135/336 (40%), Positives = 218/336 (64%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+ H  ++ LG    + V+S+LVDMY KCG + ++   FD++ + + V  +A++ G
Sbjct: 337 LAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSG 396

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G+ E  + ++  M++  +     +    LRACAG+AAL  GK++H Q ++      
Sbjct: 397 HVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLG 456

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SAL  +Y+KCG ++    +F ++P R++I WNS+ISGF+QNG G  AL +F++M  
Sbjct: 457 APVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKM 516

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GT PD+++FI +L ACSHMGL+DRG ++F+ MTK+Y + P+++HY CMVD+L RAG+L+
Sbjct: 517 EGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLK 576

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE+    H + LW ++LGAC + R+  V     +++MEL      +Y+LL N+Y 
Sbjct: 577 EAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYA 636

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +  +WND  ++R LM+  GV K PG SW+E NS+++
Sbjct: 637 SQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVH 672



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H  ++  GL   V VE+SLV MY K G +  +  VF+   ++NS++ SA++ G
Sbjct: 236 LLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITG 295

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G+ +S + +F +M         F+F  VL A + L AL +GK+ H   ++      
Sbjct: 296 YAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQ 355

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + ++SALVD+YAKCGC+  A + F Q+   +++ W +M+SG  QNG  EEAL ++  M +
Sbjct: 356 IYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDK 415

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            G  P   +    L AC+ +  ++ G++    + K
Sbjct: 416 EGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 450



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           NV V +SL++MY K G+V ++ RVFD M ++NS S S ++ GY      E    +FR M 
Sbjct: 152 NVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLML 211

Query: 79  ----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
                E   F    VL A +    L +G+++H   ++      V +E++LV +YAK GC+
Sbjct: 212 EECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCM 271

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
             A  +F     RN ITW++MI+G+AQNG  + A+ +F  M   G  P   +F+GVL+A 
Sbjct: 272 GAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNAS 331

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           S +G +  G++    M K    + +I   + +VD+  + G + +A+
Sbjct: 332 SDLGALAVGKQAHGLMVK-LGFEVQIYVKSALVDMYAKCGCIADAK 376



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 124/270 (45%), Gaps = 18/270 (6%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCG--LVDESHRVFDKMLK--KNSVSSSAL 58
           + G+ +HA  +  G   +  V +SL++ Y      L+  +  VFD +    ++  S ++L
Sbjct: 29  RHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSL 88

Query: 59  LQGYCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIR-R 112
           L         +++ R FR M           SF     A A  A+   G   H    +  
Sbjct: 89  LNPLSGHRPLDALSR-FRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIP 147

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           S   +V + ++L+++Y K G V  A ++F  MP RN  +W++M++G+A     EEA  +F
Sbjct: 148 SAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLF 207

Query: 173 DDMTE--GGTKPDHVSFIGVLSACS-HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
             M E     K + V+   VLSA S  +GL+  G +    + K+  +   +   N +V +
Sbjct: 208 RLMLEECPSEKSEFVA-TAVLSAVSVPLGLL-MGEQMHGLIVKDGLLD-FVSVENSLVTM 264

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             +AG +  A  + E++  R +S  W  ++
Sbjct: 265 YAKAGCMGAAFHVFESSRER-NSITWSAMI 293


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/336 (40%), Positives = 218/336 (64%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+ H  ++ LG    + V+S+LVDMY KCG + ++   FD++ + + V  +A++ G
Sbjct: 337 LAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSG 396

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G+ E  + ++  M++  +     +    LRACAG+AAL  GK++H Q ++      
Sbjct: 397 HVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLG 456

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SAL  +Y+KCG ++    +F ++P R++I WNS+ISGF+QNG G  AL +F++M  
Sbjct: 457 APVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKM 516

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GT PD+++FI +L ACSHMGL+DRG ++F+ MTK+Y + P+++HY CMVD+L RAG+L+
Sbjct: 517 EGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLK 576

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE+    H + LW ++LGAC + R+  V     +++MEL      +Y+LL N+Y 
Sbjct: 577 EAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTRDSSAYILLSNIYA 636

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +  +WND  ++R LM+  GV K PG SW+E NS+++
Sbjct: 637 SQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVH 672



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H  ++  GL   V VE+SLV MY K G +  +  VF+   ++NS++ SA++ G
Sbjct: 236 LLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITG 295

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G+ +S + +F +M         F+F  VL A + L AL +GK+ H   ++      
Sbjct: 296 YAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQ 355

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + ++SALVD+YAKCGC+  A + F Q+   +++ W +M+SG  QNG  EEAL ++  M +
Sbjct: 356 IYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDK 415

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            G  P   +    L AC+ +  ++ G++    + K
Sbjct: 416 EGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 450



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           NV V +SL++MY K G+V ++ R+FD M ++NS S S ++ GY      E    +FR M 
Sbjct: 152 NVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLML 211

Query: 79  ----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
                E   F    VL A +    L +G+++H   ++      V +E++LV +YAK GC+
Sbjct: 212 EECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCM 271

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
             A  +F     RN ITW++MI+G+AQNG  + A+ +F  M   G  P   +F+GVL+A 
Sbjct: 272 GAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNAS 331

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           S +G +  G++    M K    + +I   + +VD+  + G + +A+
Sbjct: 332 SDLGALAVGKQAHGLMVK-LGFEVQIYVKSALVDMYAKCGCIADAK 376



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 125/270 (46%), Gaps = 18/270 (6%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCG--LVDESHRVFDKMLK--KNSVSSSAL 58
           + G+ +HA  +  G   +  V +SL++ Y      L+  +  VFD +    ++  S ++L
Sbjct: 29  RHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSL 88

Query: 59  LQGYCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIR-R 112
           L    +    +++ R FR M           SF     A A  A+   G   H    +  
Sbjct: 89  LNPLSRHRPLDALSR-FRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIP 147

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           S   +V + ++L+++Y K G V  A ++F  MP RN  +W++M++G+A     EEA  +F
Sbjct: 148 SAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLF 207

Query: 173 DDMTE--GGTKPDHVSFIGVLSACS-HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
             M E     K + V+   VLSA S  +GL+  G +    + K+  +   +   N +V +
Sbjct: 208 RLMLEECPSEKSEFVA-TAVLSAVSVPLGLL-MGEQMHGLIVKDGLLD-FVSVENSLVTM 264

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             +AG +  A  + E++  R +S  W  ++
Sbjct: 265 YAKAGCMGAAFHVFESSRER-NSITWSAMI 293


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 142/332 (42%), Positives = 212/332 (63%), Gaps = 6/332 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G+++H   + LG    + V S+LVDMY KCG + ++ + F+ + + + V  ++++ GY 
Sbjct: 338 EGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYV 397

Query: 64  QTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Q GD+E  + ++ +M+       DL +   VL+AC+ LAAL  GK++H   I+ +   ++
Sbjct: 398 QNGDYEGALNLYGKMQLGGVIPNDL-TMASVLKACSNLAALDQGKQMHAGIIKYNFSLEI 456

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            I SAL  +YAKCG +D  ++IF +MP R++I+WN+MISG +QNGRG E L +F+ M   
Sbjct: 457 PIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLE 516

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           GTKPD+V+F+ +LSACSHMGL+DRG  +F  M  E+ I P +EHY CMVD+L RAG L E
Sbjct: 517 GTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLHE 576

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A+  IE+A   H   LW +LL A    R+  +     +K+MEL      +YVLL ++Y A
Sbjct: 577 AKEFIESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYTA 636

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           +G+W D  ++R +MK  GV K PG SWIE  S
Sbjct: 637 LGKWEDVERVRGMMKARGVTKEPGCSWIELKS 668



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 152/290 (52%), Gaps = 10/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +  G++VH+  +  GL   V V ++LV MY KCG ++++ + F+    KNS++ SA++ G
Sbjct: 235 VNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTG 294

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q GD +  +++F +M    E    F+   V+ AC+   A+  G+++H   ++      
Sbjct: 295 FAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQ 354

Query: 118 VIIESALVDLYAKCGCVDFAHQIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           + + SALVD+YAKCG +  A + F  +Q P  +++ W S+I+G+ QNG  E AL ++  M
Sbjct: 355 LYVLSALVDMYAKCGSIVDARKGFECIQQP--DVVLWTSIITGYVQNGDYEGALNLYGKM 412

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
             GG  P+ ++   VL ACS++  +D+G++  A + K Y    +I   + +  +  + G 
Sbjct: 413 QLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIK-YNFSLEIPIGSALSAMYAKCGS 471

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPD 284
           L++   +      R   S   ++ G     R     E   K  +E  KPD
Sbjct: 472 LDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPD 521



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 138/264 (52%), Gaps = 10/264 (3%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           + G++ HA  +      +V   SSL++MY K GLV E+  +FD+M ++N+VS + ++ GY
Sbjct: 133 RAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGY 192

Query: 63  CQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
                 +    +F+ M      +  + F F  VL A      +  G++VH   ++     
Sbjct: 193 ASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVC 252

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V + +ALV +Y KCG ++ A + F     +N ITW++M++GFAQ G  ++AL++F DM 
Sbjct: 253 IVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMH 312

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           + G  P   + +GV++ACS    I  GR+ H  S+   Y ++  +   + +VD+  + G 
Sbjct: 313 QSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYV--LSALVDMYAKCGS 370

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           + +A    E    + D  LW  ++
Sbjct: 371 IVDARKGFECIQ-QPDVVLWTSII 393



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 142/285 (49%), Gaps = 13/285 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +L++G+ +HA+++  G   +  + +SL+++Y KC    +++ VFD +  K+ VS + L+ 
Sbjct: 25  QLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLIN 84

Query: 61  GYCQTGDFES---VIRIFREMEEI------DLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
            + Q         V+ +FR++         +  +   V  A + L+  R G++ H   ++
Sbjct: 85  AFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVK 144

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
            +   DV   S+L+++Y K G V  A  +F +MP RN ++W +MISG+A     +EA  +
Sbjct: 145 TACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFEL 204

Query: 172 FDDM--TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
           F  M   E G   +   F  VLSA +   L++ GR+   S+  +  +   +   N +V +
Sbjct: 205 FKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQ-VHSLAMKNGLVCIVSVANALVTM 263

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
             + G LE+A    E +  + +S  W  ++     F ++  A ++
Sbjct: 264 YVKCGSLEDALKTFELSGNK-NSITWSAMVTGFAQFGDSDKALKL 307



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 4/105 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QGK++HA +I       + + S+L  MY KCG +D+ +R+F +M  ++ +S +A++ G
Sbjct: 437 LDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISG 496

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLG 102
             Q G     + +F +M     + D  +F  +L AC+ +  +  G
Sbjct: 497 LSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRG 541



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 17/201 (8%)

Query: 89  VLRA---CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           VLRA   C     LR G+ +H + +         I ++L++LYAKC     A+ +F  + 
Sbjct: 13  VLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSIN 72

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFD-----DMTEGGTKPDHVSFIGVLSACSHMGLI 200
            +++++WN +I+ F+Q      +L +        M      P+  +  GV +A S +   
Sbjct: 73  NKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDS 132

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             GR+  A   K       +   + ++++  + GL+ EA  L +    R+  S W  ++ 
Sbjct: 133 RAGRQAHALAVKT-ACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVS-WATMI- 189

Query: 261 ACTTFRNAHVAERVAKKIMEL 281
                 + + ++ +A +  EL
Sbjct: 190 ------SGYASQELADEAFEL 204


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/330 (44%), Positives = 199/330 (60%), Gaps = 6/330 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K GK V   V   GL  N  + ++L+DMY KCG + ++ R+FD M  ++ V+ SA++ GY
Sbjct: 238 KLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGY 297

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-D 117
            Q       + +F EM+    E +  +   VL ACA L AL  GK VH  Y+RR      
Sbjct: 298 TQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVH-SYVRRKRLSLT 356

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            I+ +ALVD YAKCGC+D A + F  MPV+N  TW ++I G A NGRG EAL +F  M E
Sbjct: 357 TILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRE 416

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P  V+FIGVL ACSH  L++ GR+HF SM ++Y IKP++EHY CMVDLLGRAGL++
Sbjct: 417 AGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVD 476

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I       ++ +W  LL +C   RN  + E   K+I+ L P     YVLL N+Y 
Sbjct: 477 EAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYA 536

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           + G+W DA  +R  MK  G++K PG S IE
Sbjct: 537 SAGQWKDAAMVRKEMKDRGIEKTPGCSLIE 566



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 6/267 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ V A  +  GL  +  V SSL+ MY  CG V  +  VFD   +   V  +A++  
Sbjct: 136 LDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAA 195

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + GD+  V+ +F+ M E+    D  +   V+ AC  +   +LGK V          ++
Sbjct: 196 YLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARN 255

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+D+YAKCG +  A ++F  M  R+++ W++MISG+ Q  +  EAL +F +M  
Sbjct: 256 PKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQL 315

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +P+ V+ + VLSAC+ +G ++ G K   S  +  R+         +VD   + G ++
Sbjct: 316 ARVEPNDVTMVSVLSACAVLGALETG-KWVHSYVRRKRLSLTTILGTALVDFYAKCGCID 374

Query: 238 EAETLIENADCRHDSSLWEVLLGACTT 264
           +A    E+   + +S  W  L+    T
Sbjct: 375 DAVEAFESMPVK-NSWTWTALIKGMAT 400



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 9/178 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH+ V    L    ++ ++LVD Y KCG +D++   F+ M  KNS + +AL++G
Sbjct: 338 LETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKG 397

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F  M E  +     +F  VL AC+    +  G+       R  G K 
Sbjct: 398 MATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKP 457

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQN---GRGEEALR 170
            +     +VDL  + G VD A+Q    MP+  N + W +++S  A +   G GEEAL+
Sbjct: 458 RVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALK 515



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 96/212 (45%), Gaps = 8/212 (3%)

Query: 58  LLQGYCQTGDFESVIRIFREME------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           L++ +   G  E  + +F EM         D  +    L++C+ + AL +G+ V    ++
Sbjct: 89  LMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVK 148

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
           R    D  + S+L+ +YA CG V  A  +F       ++ WN++++ + +NG   E + +
Sbjct: 149 RGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEM 208

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           F  M E G   D V+ + V++AC  +G    G K  A    E  +    +    ++D+  
Sbjct: 209 FKGMLEVGVAFDEVTLVSVVTACGRIGDAKLG-KWVAGHVDEEGLARNPKLVTALMDMYA 267

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           + G + +A  L +    R D   W  ++   T
Sbjct: 268 KCGEIGKARRLFDGMQSR-DVVAWSAMISGYT 298


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 219/368 (59%), Gaps = 42/368 (11%)

Query: 2   LKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFD--------------- 45
           +K G+EVH +V+    L  ++++ ++ VDMY KC  + E+  +FD               
Sbjct: 269 IKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMIS 328

Query: 46  ----------------KMLKKNSVSSSALLQGYCQTGDFESVIRIF----REMEEIDLFS 85
                           KM ++N VS +AL+ GY Q G+ E  + +F    RE      +S
Sbjct: 329 GYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYS 388

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIR-----RSGCKD-VIIESALVDLYAKCGCVDFAHQ 139
           F  +L+ACA LA L LG + H   ++     +SG +D + + ++L+D+Y KCGCV+  + 
Sbjct: 389 FANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYL 448

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +M  R+ ++WN+MI GFAQNG G EAL +F +M E G KPDH++ IGVLSAC H G 
Sbjct: 449 VFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGF 508

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           ++ GR +F+SMT+++ + P  +HY CMVDLLGRAG LEEA+++IE    + DS +W  LL
Sbjct: 509 VEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLL 568

Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
            AC   RN  + + VA+K++E++P     YVLL N+Y  +G+W D   +R  M+  GV K
Sbjct: 569 AACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTK 628

Query: 320 MPGKSWIE 327
            PG SWI+
Sbjct: 629 QPGCSWIK 636



 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 35/278 (12%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VHA VI  G    + +++ L+D Y KCG +++  +VFDKM ++N  + ++++ G  + G 
Sbjct: 42  VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101

Query: 68  FESVIRIFREMEEIDL-----------------------------------FSFGIVLRA 92
            +    +FR M E D                                    +SF  VL A
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
           C+GL  +  G +VH    +     DV I SALVD+Y+KCG V+ A ++F +M  RN+++W
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           NS+I+ F QNG   EAL +F  M E   +PD V+   V+SAC+ +  I  G++    + K
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281

Query: 213 EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
             +++  I   N  VD+  +   ++EA  + ++   R+
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 142/278 (51%), Gaps = 41/278 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +G +VH+ +       +V + S+LVDMY KCG V+++ RVFD+M  +N VS ++L+  
Sbjct: 168 MNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITC 227

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           + Q G     + +F+ M     E D  +   V+ ACA L+A+++G+EVH + ++    + 
Sbjct: 228 FEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRN 287

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI-------------------------- 150
           D+I+ +A VD+YAKC  +  A  IF  MP+RN+I                          
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMA 347

Query: 151 -----TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG-R 204
                +WN++I+G+ QNG  EEAL +F  +      P H SF  +L AC+ +  +  G +
Sbjct: 348 ERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQ 407

Query: 205 KHFASMTKEYRIKPKIEHY----NCMVDLLGRAGLLEE 238
            H   +   ++ +   E      N ++D+  + G +EE
Sbjct: 408 AHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEE 445



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 36/211 (17%)

Query: 82  DLFSFGIVLRAC--AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           D   F  +L +C  + L+A+ + + VH   I+     ++ I++ L+D Y+KCG ++   Q
Sbjct: 18  DSSPFAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQ 76

Query: 140 IFLQMPVRNLI-------------------------------TWNSMISGFAQNGRGEEA 168
           +F +MP RN+                                TWNSM+SGFAQ+ R EEA
Sbjct: 77  VFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEA 136

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           L  F  M + G   +  SF  VLSACS +  +++G +   S+  +      +   + +VD
Sbjct: 137 LCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQ-VHSLIAKSPFLSDVYIGSALVD 195

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +  + G + +A+ + +    R+  S W  L+
Sbjct: 196 MYSKCGNVNDAQRVFDEMGDRNVVS-WNSLI 225


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/309 (47%), Positives = 197/309 (63%), Gaps = 8/309 (2%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF 84
           ++LVDMY KCG +D++ R+FD+M  ++ V+ SA++ GY Q+      + IF EM+  ++ 
Sbjct: 311 TALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVN 370

Query: 85  SFGI----VLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQ 139
              +    VL ACA L AL  GK VH  YIRR      VI+ +ALVD YAKCGC+  A +
Sbjct: 371 PNDVTMVSVLSACAVLGALETGKWVH-SYIRRKDLPLTVILGTALVDFYAKCGCIKDAVK 429

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
            F  MPVRN  TW ++I G A NGR  EAL +F  M E   +P  V+FIGVL ACSH  L
Sbjct: 430 AFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCL 489

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           ++ GR+HF SMT++Y I P+IEHY CMVDLLGRAGL++EA   I N     ++ +W  LL
Sbjct: 490 VEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALL 549

Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHL-SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
            ACT  +N  + E   K+I+ L P CH  +Y+LL N Y +VG+W +A  +R  MK  GV+
Sbjct: 550 SACTVHKNVEIGEEALKQIVPLDP-CHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVE 608

Query: 319 KMPGKSWIE 327
           K+PG S IE
Sbjct: 609 KIPGCSLIE 617



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 139/263 (52%), Gaps = 8/263 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ V A     G   +  V +SL+ MY  CG V  +H +F  +  K  ++ +A++ G
Sbjct: 187 LSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAG 246

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CK 116
           Y + GD++ V+ +F+ M E+    D  +   V  AC  L    LG+ +  +Y    G  +
Sbjct: 247 YVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWI-AEYAEEKGMLR 305

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + +ALVD+YAKCG +D A ++F +M  R+++ W++MISG+ Q+ R  EAL IF++M 
Sbjct: 306 SRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQ 365

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                P+ V+ + VLSAC+ +G ++ G K   S  +   +   +     +VD   + G +
Sbjct: 366 GTEVNPNDVTMVSVLSACAVLGALETG-KWVHSYIRRKDLPLTVILGTALVDFYAKCGCI 424

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           ++A    E+   R ++  W  L+
Sbjct: 425 KDAVKAFESMPVR-NTWTWTALI 446



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 107/220 (48%), Gaps = 7/220 (3%)

Query: 49  KKNSVSSSALLQGYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGK 103
            +++ S + L++ + + G  E  + +F EM +      D  +    +++C+ +  L +G+
Sbjct: 132 PRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGR 191

Query: 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
            V     +R    D  + ++L+ +YA CG V  AH +F  + V+ +I WN+MI+G+ +NG
Sbjct: 192 GVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNG 251

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
             +E + +F  M E     D V+ + V +AC  +G  + G +  A   +E  +       
Sbjct: 252 DWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG-QWIAEYAEEKGMLRSRNLA 310

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
             +VD+  + G L++A  L +    R D   W  ++   T
Sbjct: 311 TALVDMYAKCGELDKARRLFDRMHSR-DVVAWSAMISGYT 349



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 9/178 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH+ +    L   V++ ++LVD Y KCG + ++ + F+ M  +N+ + +AL++G
Sbjct: 389 LETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKG 448

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CK 116
               G     + +F  M E ++     +F  VL AC+    +  G+       +  G C 
Sbjct: 449 MASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICP 508

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGR---GEEALR 170
            +     +VDL  + G +D A+Q    MP+  N + W +++S    +     GEEAL+
Sbjct: 509 RIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALK 566


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 137/332 (41%), Positives = 214/332 (64%), Gaps = 10/332 (3%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+  ++  +  C NV   ++++  Y +CG + E+  +FDKM K++ VS +A++ GY Q+G
Sbjct: 324 EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSG 383

Query: 67  DFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR---RSGCKDVI 119
                +R+F    RE   ++  SF   L  CA + AL LGK++H + ++    +GC    
Sbjct: 384 HSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGC---F 440

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+ +Y KCG ++ A+ +F +M  +++++WN+MI+G++++G GEEALR F+ M   G
Sbjct: 441 VGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREG 500

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD  + + VLSACSH GL+D+GR++F +MT++Y ++P  +HY CMVDLLGRAGLLEEA
Sbjct: 501 LKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEA 560

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
             L++N     D+++W  LLGA     N  +AE  A KI  ++P+    YVLL N+Y + 
Sbjct: 561 HNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASS 620

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           GRW D  K+R  M+  GVKK+PG SWIE  +K
Sbjct: 621 GRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNK 652



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 120/250 (48%), Gaps = 14/250 (5%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF 84
           ++++  Y + G VD++ RVFD+M +KN VS +ALL  Y Q    E    +F   E   L 
Sbjct: 156 NTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALV 215

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           S+  +L    G    +   E   Q+      +DV+  + ++  YA+ G +D A Q+F + 
Sbjct: 216 SWNCLL---GGFVKKKKIVEAR-QFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDES 271

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           PV ++ TW +M+SG+ QN   EEA  +FD M E     + VS+  +L+       ++  +
Sbjct: 272 PVHDVFTWTAMVSGYIQNRMVEEARELFDRMPE----RNEVSWNAMLAGYVQGERVEMAK 327

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           + F  M         +  +N M+    + G + EA+ L +    R D   W  ++   + 
Sbjct: 328 ELFDVMPCR-----NVSTWNTMITGYAQCGKISEAKNLFDKMPKR-DPVSWAAMIAGYSQ 381

Query: 265 FRNAHVAERV 274
             +++ A R+
Sbjct: 382 SGHSYEALRL 391



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 124/255 (48%), Gaps = 18/255 (7%)

Query: 28  VDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFG 87
           +  Y + G   E+ RVF +M + +SVS +A++ GY + G+FE    +F EM E DL S+ 
Sbjct: 66  ISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWN 125

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           ++++       L   +E+      R   +DV   + ++  YA+ GCVD A ++F +MP +
Sbjct: 126 VMIKGYVRNRNLGKAREL----FERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEK 181

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH--VSFIGVLSACSHMGLIDRGRK 205
           N ++WN+++S + QN + EEA  +F      G++ +   VS+  +L        I   R+
Sbjct: 182 NDVSWNALLSAYVQNSKLEEACVLF------GSRENWALVSWNCLLGGFVKKKKIVEARQ 235

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F SM         +  +N ++    + G ++EA  L + +   HD   W  ++      
Sbjct: 236 FFDSMKVR-----DVVSWNTIITGYAQNGEIDEARQLFDESPV-HDVFTWTAMVSGYIQN 289

Query: 266 RNAHVAERVAKKIME 280
           R    A  +  ++ E
Sbjct: 290 RMVEEARELFDRMPE 304



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 101/193 (52%), Gaps = 4/193 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y + G +DE+ ++FD+    +  + +A++ GY Q    E    +F  M 
Sbjct: 244 DVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMP 303

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E +  S+  +L        + + KE+         C++V   + ++  YA+CG +  A  
Sbjct: 304 ERNEVSWNAMLAGYVQGERVEMAKEL----FDVMPCRNVSTWNTMITGYAQCGKISEAKN 359

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +MP R+ ++W +MI+G++Q+G   EALR+F  M   G + +  SF   LS C+ +  
Sbjct: 360 LFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVA 419

Query: 200 IDRGRKHFASMTK 212
           ++ G++    + K
Sbjct: 420 LELGKQLHGRLVK 432



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 141/328 (42%), Gaps = 52/328 (15%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI 81
           V  ++++  Y + G  + +  +FD+M +++ VS + +++GY +  +      +F  M E 
Sbjct: 91  VSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPER 150

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC-----GCVDF 136
           D+ S+  +L   A    +   + V      R   K+ +  +AL+  Y +       CV F
Sbjct: 151 DVCSWNTILSGYAQNGCVDDARRV----FDRMPEKNDVSWNALLSAYVQNSKLEEACVLF 206

Query: 137 --------------------------AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
                                     A Q F  M VR++++WN++I+G+AQNG  +EA +
Sbjct: 207 GSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQ 266

Query: 171 IFDDMTEGGTKPDH--VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           +FD+       P H   ++  ++S      +++  R+ F  M +   +      +N M+ 
Sbjct: 267 LFDE------SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVS-----WNAMLA 315

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288
              +   +E A+ L +   CR+ S+ W  ++           A+ +  K+ +  P   +S
Sbjct: 316 GYVQGERVEMAKELFDVMPCRNVST-WNTMITGYAQCGKISEAKNLFDKMPKRDP---VS 371

Query: 289 YVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
           +  +   Y   G   +A ++  LM+  G
Sbjct: 372 WAAMIAGYSQSGHSYEALRLFVLMEREG 399



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 6/173 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H +++  G      V ++L+ MY KCG ++E++ +F +M  K+ VS + ++ G
Sbjct: 420 LELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAG 479

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  E  +R F  M+    + D  +   VL AC+    +  G++      +  G + 
Sbjct: 480 YSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRP 539

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEA 168
                A +VDL  + G ++ AH +   MP   +   W +++     +G  E A
Sbjct: 540 NSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 592



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           ++   + + +SG  D+   +  +  Y + G    A ++F +MP  + +++N+MISG+ +N
Sbjct: 44  QKSQTKPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRN 103

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
           G  E A  +FD+M E     D VS+  ++        + + R+ F  M +       +  
Sbjct: 104 GEFELARMLFDEMPE----RDLVSWNVMIKGYVRNRNLGKARELFERMPER-----DVCS 154

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +N ++    + G +++A  + +    ++D S W  LL A
Sbjct: 155 WNTILSGYAQNGCVDDARRVFDRMPEKNDVS-WNALLSA 192


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  283 bits (725), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 208/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++    VH  +I  G     +V ++L+DMY K G +D +  VF KM+ K+ VS ++L+ G
Sbjct: 57  MQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTG 116

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G +E  I++F +M       D  +   VL ACA L  +  G+++H   ++      
Sbjct: 117 YSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESS 176

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + ++++LV +YAKCG +  A++ F  MP R++I+W ++I G+AQNGRG+ +L+ +D M  
Sbjct: 177 LSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIA 236

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GTKPD+++FIG+L ACSH GL+  GR +F +M K Y IKP  EHY CM+DLLGR+G L 
Sbjct: 237 TGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLA 296

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+ L+       D+ +W+ LL AC   +   + E  AK + EL+P   + YV+L N+Y 
Sbjct: 297 EAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYS 356

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G+W DA +IR LM+  G+ K PG SWIE NSK++
Sbjct: 357 AAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVS 392



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 125/239 (52%), Gaps = 6/239 (2%)

Query: 51  NSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVH 106
           + VS ++L+ G  + G  E  +  F++M     +ID ++   VL + A +  ++    VH
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
           C  I+       ++ +AL+D+YAK G +D A  +F +M  +++++W S+++G++ NG  E
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           EA+++F  M   G  PD ++   VLSAC+ + ++D G++  A++ K   ++  +   N +
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS-GLESSLSVDNSL 183

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPD 284
           V +  + G + +A    +N   R   S   +++G     R  H  +   + I    KPD
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPD 242


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  283 bits (724), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 136/330 (41%), Positives = 206/330 (62%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VHA         ++ + S L+ MY KCG V+ + R+FD++ + + V  ++++ G
Sbjct: 406 LEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAG 465

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                  +     F++M E  +F    S+  VL  CA L++L  G++VH Q  R     D
Sbjct: 466 LSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMND 525

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SAL+D+Y+KCG VD A  +F  M  +N +TWN MI G+AQNG G+EA+ +++DM  
Sbjct: 526 AFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIG 585

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F+ VL+ACSH GL+D G K F SM +E+ ++P ++HY C++D LGRAG L 
Sbjct: 586 SGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLH 645

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE LI+   C++D  +WEVLL +C  + +  +A R A+++  L P     YVLL N+Y 
Sbjct: 646 EAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYS 705

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           ++GRW+DA  +R LM Y+ V K PG SWIE
Sbjct: 706 SLGRWDDAKAVRELMSYNQVVKDPGYSWIE 735



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 23/241 (9%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+  H   I +GL  N+ V ++L+ MY KC  + ++ + F  + + N VS +A++ G   
Sbjct: 127 GRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLAD 186

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACA--GLAALRL------------GKEVH 106
           +       R+FR M      +D  S   VL  C+  G     L            G++VH
Sbjct: 187 SDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVH 246

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
           C  I+     D+ + ++L+D+YAK G +D A  IF+ MP  ++++WN MI+G+ Q  +  
Sbjct: 247 CLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSS 306

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           +A+     M   G +PD ++++ +L AC   G I+ GR+ F  M+      P +  +N +
Sbjct: 307 KAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMS-----SPSLSSWNTI 361

Query: 227 V 227
           +
Sbjct: 362 L 362



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 125/260 (48%), Gaps = 19/260 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +HA ++   L  +  + + L++ Y KC  +D S R+FD+M K++  + +A+L  YC+
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLR------ACAGLAALRLGKEVHCQYIRRSGCKDV 118
             + E    +F EM E ++ S+  ++       AC  L  +  G+  H   I+     ++
Sbjct: 84  ASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNI 143

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +AL+ +YAKC C+  A Q F  +P  N +++ +M+ G A + +  EA R+F  M   
Sbjct: 144 YVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRN 203

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGR-------------KHFASMTKEYRIKPKIEHYNC 225
               D VS   VL  CS  G  + G              +    +T ++  +  +   N 
Sbjct: 204 RIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNS 263

Query: 226 MVDLLGRAGLLEEAETLIEN 245
           ++D+  + G ++ AE +  N
Sbjct: 264 LLDMYAKNGNMDSAEMIFVN 283



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 100/185 (54%), Gaps = 4/185 (2%)

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGI 88
           K G ++   ++FD M   +  S + +L GY Q  + +  +++FREM+      D  +  I
Sbjct: 336 KSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAI 395

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L + AG+  L  G++VH    +     D+ + S L+ +Y+KCG V+ A +IF ++   +
Sbjct: 396 ILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELD 455

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           ++ WNSM++G + N   +EA   F  M E G  P   S+  VLS C+ +  + +GR+  +
Sbjct: 456 IVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHS 515

Query: 209 SMTKE 213
            + +E
Sbjct: 516 QIARE 520



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ C    A   GK +H   +R     D  + + L++ YAKC  +D + ++F QMP R+
Sbjct: 11  LLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRD 70

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + TWN+++  + +    E+A  +F +M E
Sbjct: 71  IYTWNAILGAYCKASELEDAHVLFAEMPE 99


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/330 (41%), Positives = 206/330 (62%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VHA         ++ + S L+ MY KCG V+ + R+FD++ + + V  ++++ G
Sbjct: 435 LEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAG 494

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                  +     F++M E  +F    S+  VL  CA L++L  G++VH Q  R     D
Sbjct: 495 LSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMND 554

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SAL+D+Y+KCG VD A  +F  M  +N +TWN MI G+AQNG G+EA+ +++DM  
Sbjct: 555 AFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIG 614

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F+ VL+ACSH GL+D G K F SM +E+ ++P ++HY C++D LGRAG L 
Sbjct: 615 SGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLH 674

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE LI+   C++D  +WEVLL +C  + +  +A R A+++  L P     YVLL N+Y 
Sbjct: 675 EAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYS 734

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           ++GRW+DA  +R LM Y+ V K PG SWIE
Sbjct: 735 SLGRWDDAKAVRELMSYNQVVKDPGYSWIE 764



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 23/241 (9%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+  H   I +GL  N+ V ++L+ MY KC  + ++ + F  + + N VS +A++ G   
Sbjct: 156 GRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLAD 215

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACA--GLAALRL------------GKEVH 106
           +       R+FR M      +D  S   VL  C+  G     L            G++VH
Sbjct: 216 SDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVH 275

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
           C  I+     D+ + ++L+D+YAK G +D A  IF+ MP  ++++WN MI+G+ Q  +  
Sbjct: 276 CLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSS 335

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           +A+     M   G +PD ++++ +L AC   G I+ GR+ F  M+      P +  +N +
Sbjct: 336 KAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMS-----SPSLSSWNTI 390

Query: 227 V 227
           +
Sbjct: 391 L 391



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 100/185 (54%), Gaps = 4/185 (2%)

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGI 88
           K G ++   ++FD M   +  S + +L GY Q  + +  +++FREM+      D  +  I
Sbjct: 365 KSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAI 424

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L + AG+  L  G++VH    +     D+ + S L+ +Y+KCG V+ A +IF ++   +
Sbjct: 425 ILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELD 484

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           ++ WNSM++G + N   +EA   F  M E G  P   S+  VLS C+ +  + +GR+  +
Sbjct: 485 IVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHS 544

Query: 209 SMTKE 213
            + +E
Sbjct: 545 QIARE 549



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 48/289 (16%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +HA ++   L  +  + + L++ Y KC  +D S R+FD+M K++  + +A+L  YC+
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 65  TGDFESVIRIFREMEEIDL-----------------------------------FSFGIV 89
             + E    +F EM E ++                                   F+   V
Sbjct: 84  ASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASV 143

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L AC  L  +  G+  H   I+     ++ + +AL+ +YAKC C+  A Q F  +P  N 
Sbjct: 144 LSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNE 203

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR----- 204
           +++ +M+ G A + +  EA R+F  M       D VS   VL  CS  G  + G      
Sbjct: 204 VSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSND 263

Query: 205 --------KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
                   +    +T ++  +  +   N ++D+  + G ++ AE +  N
Sbjct: 264 VLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVN 312



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 31/148 (20%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ C    A   GK +H   +R     D  + + L++ YAKC  +D + ++F QMP R+
Sbjct: 11  LLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRD 70

Query: 149 -------------------------------LITWNSMISGFAQNGRGEEALRIFDDMTE 177
                                          +++WN++IS   +NG  ++AL ++  M+ 
Sbjct: 71  IYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSR 130

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G  P H +   VLSAC  +  ++ GR+
Sbjct: 131 EGFVPTHFTLASVLSACGALVDVECGRR 158


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/336 (40%), Positives = 218/336 (64%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+++HA+    G   ++ V ++LV +Y +CG V +++  FDK+  K+++S ++L+ G
Sbjct: 590 LNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISG 649

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G  E  + +F +M    +EI+ F+FG  + A A +A ++LGK++H   I+     +
Sbjct: 650 FAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSE 709

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + + L+ LYAKCG +D A + F +MP +N I+WN+M++G++Q+G G +AL +F+DM +
Sbjct: 710 TEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQ 769

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+HV+F+GVLSACSH+GL+D G K+F SM + + + PK EHY C+VDLLGR+GLL 
Sbjct: 770 LGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLS 829

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A   +E    + D+ +   LL AC   +N  + E  A  ++EL+P    +YVLL N+Y 
Sbjct: 830 RARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYA 889

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W    + R +MK  GVKK PG+SWIE N+ ++
Sbjct: 890 VTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVH 925



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 141/240 (58%), Gaps = 5/240 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H +V+  G   NV V S L+DMY K G +D + ++F ++ +K+ VS +A++ GY Q
Sbjct: 492 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQ 551

Query: 65  TGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              F   + +F+EM++  + S    F   + ACAG+ AL  G+++H Q        D+ +
Sbjct: 552 HEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSV 611

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV LYA+CG V  A+  F ++  ++ I+WNS+ISGFAQ+G  EEAL +F  M++ G 
Sbjct: 612 GNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQ 671

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           + +  +F   +SA +++  +  G++  A + K      + E  N ++ L  + G +++AE
Sbjct: 672 EINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGH-DSETEVSNVLITLYAKCGNIDDAE 730



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 135/240 (56%), Gaps = 7/240 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+ H+  I  G+  ++++E +L+D+Y KC  +  +H  F     +N V  + +L  Y  
Sbjct: 391 GKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGL 450

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             +     +IF +M+    E + F++  +LR C+ L A+ LG+++H Q ++     +V +
Sbjct: 451 LDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYV 510

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            S L+D+YAK G +D A +IF ++  +++++W +MI+G+AQ+ +  EAL +F +M + G 
Sbjct: 511 SSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGI 570

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             D++ F   +SAC+ +  +++G++ H  +    Y     +   N +V L  R G + +A
Sbjct: 571 HSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVG--NALVSLYARCGKVRDA 628



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 159/317 (50%), Gaps = 40/317 (12%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++HA+ IT G   ++ V + L+D+Y K G ++ + +VFD + K++SVS  A+L G  Q+
Sbjct: 190 EKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQS 249

Query: 66  GDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  E  + +F +M    ++     F  VL AC  +   ++G+++H   +++    +  + 
Sbjct: 250 GCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVC 309

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALV LY++ G    A Q+F  M  R+ +++NS+ISG +Q G  ++AL +F  M     K
Sbjct: 310 NALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLK 369

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD V+   +LSACS +G +  G K F S   +  +   I     ++DL  +   ++ A  
Sbjct: 370 PDCVTVASLLSACSSVGALLVG-KQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHE 428

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
              + +   +  LW V+L                           ++Y LLDN+      
Sbjct: 429 FFLSTETE-NVVLWNVML---------------------------VAYGLLDNL------ 454

Query: 302 WNDAFKIRTLMKYSGVK 318
            N++FKI T M+  G++
Sbjct: 455 -NESFKIFTQMQMEGIE 470



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 125/242 (51%), Gaps = 7/242 (2%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G+++H  V+  G      V ++LV +Y + G    + +VF+ ML+++ VS ++L+ G 
Sbjct: 288 KVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGL 347

Query: 63  CQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G  +  + +F++M     + D  +   +L AC+ + AL +GK+ H   I+     D+
Sbjct: 348 SQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDI 407

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           I+E AL+DLY KC  +  AH+ FL     N++ WN M+  +       E+ +IF  M   
Sbjct: 408 ILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQME 467

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G +P+  ++  +L  CS +  +D G + H   +   ++    +   + ++D+  + G L+
Sbjct: 468 GIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVS--SVLIDMYAKLGKLD 525

Query: 238 EA 239
            A
Sbjct: 526 HA 527



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 139/293 (47%), Gaps = 13/293 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
              G ++H K++ +G C  VV+   L+D+Y   G +D +  VFD+M  +     + +L  
Sbjct: 84  FSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHR 143

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGL-AALRLGKEVHCQYIRRSGCK 116
           +        V+ +FR M  E++  D  ++  VLR C G        +++H + I      
Sbjct: 144 FVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYEN 203

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            + + + L+DLY K G ++ A ++F  +  R+ ++W +M+SG +Q+G  EEA+ +F  M 
Sbjct: 204 SLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMH 263

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAG 234
             G  P    F  VLSAC+ +     G +    + K+      +E Y  N +V L  R G
Sbjct: 264 TSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQ---GFSLETYVCNALVTLYSRLG 320

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDC 285
               AE +  NA  + D   +  L+   +    +  A  + KK+    LKPDC
Sbjct: 321 NFIPAEQVF-NAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDC 372



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 44  FDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAAL 99
           F K L+ N+    AL   Y       + I     MEE     +  ++  +L  C      
Sbjct: 29  FQKFLEHNT----ALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWF 84

Query: 100 RLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF 159
             G ++H + ++   C +V++   L+DLY   G +D A  +F +MPVR L  WN ++  F
Sbjct: 85  SDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRF 144

Query: 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219
                    L +F  M +   KPD  ++ GVL  C    +     +   + T  +  +  
Sbjct: 145 VAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENS 204

Query: 220 IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           +   N ++DL  + G L  A+ + +    R DS  W  +L   +
Sbjct: 205 LFVCNPLIDLYFKNGFLNSAKKVFDGLQKR-DSVSWVAMLSGLS 247


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 219/373 (58%), Gaps = 42/373 (11%)

Query: 3   KQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGL------------------------- 36
           ++G++VHA ++    L  ++V+ ++LVDMY KCG                          
Sbjct: 269 REGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAG 328

Query: 37  ------VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSF 86
                 V+++  VF +M++KN ++ + L+  Y Q G+ E  IR+F +++   +    +++
Sbjct: 329 YAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTY 388

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRS------GCKDVIIESALVDLYAKCGCVDFAHQI 140
           G VL AC  +A L+LG++ H   ++           DV + ++LVD+Y K G +D   ++
Sbjct: 389 GNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 448

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F +M  R+ ++WN+MI G+AQNGR ++AL +F+ M      PD V+ IGVLSAC H GL+
Sbjct: 449 FERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLV 508

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           D GR+HF  MT+++ I P  +HY CMVDLLGRAG L+EAE LI++     DS LW  LLG
Sbjct: 509 DEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLG 568

Query: 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
           AC   +N  + ER A ++ EL P+    YVLL N+Y  +G+W D F++R  MK  GV K 
Sbjct: 569 ACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQ 628

Query: 321 PGKSWIEANSKLN 333
           PG SWIE  SK+N
Sbjct: 629 PGCSWIEIGSKMN 641



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 153/306 (50%), Gaps = 41/306 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VH  V       +V + ++LVDMY KC    ++ RVFD M ++N VS ++L+  
Sbjct: 167 LRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITC 226

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F EM     F    +   V+ ACAGLAA R G++VH   ++R   +D
Sbjct: 227 YEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRD 286

Query: 118 -VIIESALVDLYAKCG-------------------------------CVDFAHQIFLQMP 145
            +++ +ALVD+YAKCG                                V+ A  +F QM 
Sbjct: 287 DMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMV 346

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +N+I WN +I+ +AQNG  EEA+R+F  +      P H ++  VL+AC ++ ++  G++
Sbjct: 347 EKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQ 406

Query: 206 HFASMTKE---YRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
               + KE   +   P+ + +  N +VD+  + G +++   + E    R + S   +++G
Sbjct: 407 AHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVG 466

Query: 261 ACTTFR 266
                R
Sbjct: 467 YAQNGR 472



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 144/316 (45%), Gaps = 38/316 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   +  H  V+   + G   + ++LV  Y + G + E+ RVFD +  +N+ S +ALL  
Sbjct: 33  LPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSA 92

Query: 62  YCQTGDFESVIRIFREMEEID-------------------------------------LF 84
           Y + G  +    +F  + + D                                      +
Sbjct: 93  YARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAY 152

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           SF   L ACA    LR G++VH    R     DV I +ALVD+YAKC     A ++F  M
Sbjct: 153 SFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAM 212

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P RN+++WNS+I+ + QNG   EAL +F +M   G  PD V+   V+SAC+ +     GR
Sbjct: 213 PERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGR 272

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           +  A M K  R++  +   N +VD+  + G   EA  + ++   R   S   +L G   +
Sbjct: 273 QVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKS 332

Query: 265 FRNAHVAERVAKKIME 280
             N   A+ V  +++E
Sbjct: 333 -ANVEDAQVVFSQMVE 347


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 138/336 (41%), Positives = 216/336 (64%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++GK+VH  ++ LG    + + ++LVDMY K G+ +++ + F+ + + + V  ++++ G
Sbjct: 329 VEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAG 388

Query: 62  YCQTGDFESVIRIF--REMEEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G+ E  + ++   +ME I  +  +   VL+AC+ LAA   G+++H + I+     +
Sbjct: 389 YVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLE 448

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I SAL  +YAKCG ++  + +F +MP R++I+WN+MISG +QNG G+EAL +F++M +
Sbjct: 449 VTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQ 508

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             TKPD V+F+ VLSACSHMGL+D G  +F  M  E+ + PK+EHY CMVD+L RAG L 
Sbjct: 509 QDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLY 568

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE+    H   LW +LLGAC  +RN  +     +K+MEL      +YVLL  +Y 
Sbjct: 569 EAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYT 628

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A+GR  D  ++R++MK  GV K PG SWIE  S ++
Sbjct: 629 ALGRPEDVERVRSMMKVRGVSKEPGCSWIELKSNVH 664



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 139/263 (52%), Gaps = 6/263 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H   +  GL   + + ++LV MY KCG +D+S +VF+    KNS++ SA++ GY Q
Sbjct: 231 GKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQ 290

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +GD    +++F  M    +    F+   VL AC+   A+  GK+VH   ++      + I
Sbjct: 291 SGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYI 350

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVD+YAK G  + A + F  +   +L+ W SMI+G+ QNG  E+AL ++  M   G 
Sbjct: 351 MTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGI 410

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+ ++   VL ACS++   D+GR+  A   K Y +  ++   + +  +  + G LEE  
Sbjct: 411 LPNELTMASVLKACSNLAAFDQGRQIHARTIK-YGLGLEVTIGSALSTMYAKCGNLEEGN 469

Query: 241 TLIENADCRHDSSLWEVLLGACT 263
            +      R D   W  ++   +
Sbjct: 470 IVFRRMPER-DIISWNAMISGLS 491



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 138/239 (57%), Gaps = 5/239 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC- 63
           G++ HA  I +    +V V SSL++MY K GL+ E+  VFD+M ++N V+ + ++ GY  
Sbjct: 130 GQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAI 189

Query: 64  --QTGD-FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               G+ FE    + RE E+++ F+F  VL A A    +  GK++HC  ++      + I
Sbjct: 190 QRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSI 249

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV +YAKCG +D + Q+F     +N ITW++MI+G+AQ+G   +AL++F  M   G 
Sbjct: 250 LNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGI 309

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            P   + +GVL+ACS    ++ G++    + K    + ++     +VD+  ++G+ E+A
Sbjct: 310 NPSEFTLVGVLNACSDACAVEEGKQVHNYLLK-LGFESQLYIMTALVDMYAKSGVTEDA 367



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 151/285 (52%), Gaps = 11/285 (3%)

Query: 2   LKQGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L++G+ +HA++I L    + + + +SL++ Y KC  + ++  VFD++  K+ +S + L+ 
Sbjct: 23  LQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLIN 82

Query: 61  GYCQTGDFES--VIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           GY Q G   S  V+ +F+ M   ++     +F  +  A + L+++  G++ H   I+ + 
Sbjct: 83  GYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMAC 142

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             DV + S+L+++Y K G +  A ++F +MP RN +TW +MISG+A      EA  +F+ 
Sbjct: 143 FYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFEL 202

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           M       +  +F  VLSA +    +D G++ H  ++     +   I   N +V +  + 
Sbjct: 203 MRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSI--LNALVTMYAKC 260

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           G L+++  + E ++ + +S  W  ++       ++H A ++  ++
Sbjct: 261 GSLDDSLQVFEMSNDK-NSITWSAMITGYAQSGDSHKALKLFSRM 304


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/374 (40%), Positives = 224/374 (59%), Gaps = 42/374 (11%)

Query: 2   LKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSS---- 56
            K+G ++HA+V+ +     ++++ ++LVDMY KCG V+E+  VFD+M  +N+VS +    
Sbjct: 273 FKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVS 332

Query: 57  ---------------------------ALLQGYCQTGDFESVIRIFREMEEIDL----FS 85
                                      AL+ GY Q G+ E  + +FR ++   +    ++
Sbjct: 333 GYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYT 392

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIR-----RSGCK-DVIIESALVDLYAKCGCVDFAHQ 139
           FG +L A A LA L LG++ H   ++     +SG + D+ + ++L+D+Y KCG V+   +
Sbjct: 393 FGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLR 452

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F  M  ++ ++WN+MI G+AQNG G EAL +F  M E G KPDHV+ IG L ACSH GL
Sbjct: 453 VFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGL 512

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           ++ GR++F SMTKE+ + P  +HY CMVDLLGRAG LEEA+ LIE+   + D+ +W  LL
Sbjct: 513 VEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLL 572

Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
            AC   RN  + + VA+KI E+ P     YVLL N+Y  +GRW DA  +R LM+  GV K
Sbjct: 573 SACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVK 632

Query: 320 MPGKSWIEANSKLN 333
            PG SWI+  S ++
Sbjct: 633 QPGCSWIDIQSNVH 646



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 139/286 (48%), Gaps = 35/286 (12%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN----------- 51
           +  + VH ++I    C  V +++ L+D+YGKCG +D + +VFD+M ++N           
Sbjct: 41  RDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTL 100

Query: 52  --------------------SVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFG 87
                                 S ++++ G+ Q   FE  +  F  M   D     +SFG
Sbjct: 101 MRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFG 160

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
             L AC+ L  L+LG ++H    +     DV + S L+D Y+KCG V  A ++F  M  +
Sbjct: 161 SGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEK 220

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           N+++WN +I+ + QNG   EAL  F  MTE G KPD V+   V+SAC+ +     G +  
Sbjct: 221 NVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIH 280

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           A + K  + +  +   N +VD+  + G + EA  + +    R+  S
Sbjct: 281 ARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVS 326



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 159/326 (48%), Gaps = 44/326 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G ++H  +       +V + S L+D Y KCGLV  + RVFD M +KN VS + L+  
Sbjct: 172 LKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITC 231

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y Q G     +  F  M E+    D  +   V+ ACA LAA + G ++H + ++    + 
Sbjct: 232 YEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRN 291

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRN---------------------------- 148
           D+I+ +ALVD+YAKCG V+ A  +F +MPVRN                            
Sbjct: 292 DLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIK 351

Query: 149 ---LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
              +++WN++I+G+ QNG  EEAL +F  +      P H +F  +L+A +++  ++ GR+
Sbjct: 352 QKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQ 411

Query: 206 HFASMTKE-YRIK----PKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             + + K  +R +    P I   N ++D+  + G +EE   + EN     D   W  ++ 
Sbjct: 412 AHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENM-VEKDHVSWNTMII 470

Query: 261 ACTTFRNAHVAERVAKKIMEL--KPD 284
                     A  + +K++E   KPD
Sbjct: 471 GYAQNGYGMEALELFQKMLESGEKPD 496



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 31/147 (21%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D   F  +L  C  L + R  + VH + I+   C++V I++ L+D+Y KCG +D+A ++F
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 142 LQMPVRNLI-------------------------------TWNSMISGFAQNGRGEEALR 170
            +M  RN+                                +WNSMI+GFAQ+ R EEAL 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHM 197
            F  M       +  SF   LSACS +
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRL 169


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 147/336 (43%), Positives = 214/336 (63%), Gaps = 8/336 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R + GK +H  +I +G   NV V ++LV+MYG C  V ++ +VFD++  +N VS +AL+ 
Sbjct: 157 RQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALIT 216

Query: 61  GYCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           GY     F  VI +FREM+      +++   G++L ACA L AL  G+ +   YI  +  
Sbjct: 217 GYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLL-ACAHLGALNQGRWID-DYIDHNRL 274

Query: 116 K-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
           + +V + +AL+D+YAKCG VD A +IF  M V+N+ TWN +ISG+A NGRGE AL+ F  
Sbjct: 275 RLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSR 334

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M     KPD V+F+GVL AC H GL++ GR +F SM +E+ ++P+IEHY CMVDLLGRAG
Sbjct: 335 MIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAG 394

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L+EA+ LI+    + D  +W  LLGAC    N  + E   KK++EL+P+   +YVLL N
Sbjct: 395 FLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLAN 454

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           +Y    RW+   ++R +M    V+K+PG S IE ++
Sbjct: 455 LYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDN 490



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 126/235 (53%), Gaps = 8/235 (3%)

Query: 56  SALLQGYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIR 111
           +++++ Y  +      + I+ +M +  +F    +F  VL++ A L    LGK +HC  I+
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                +V + +ALV++Y  C  V  A Q+F ++P RN+++WN++I+G+  N    + + +
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           F +M   G KP  V+ +GVL AC+H+G +++GR          R++  +     ++D+  
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGR-WIDDYIDHNRLRLNVFVGTALIDMYA 289

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLL-GACTTFRNAHVAERVAKKIME-LKPD 284
           + G+++EAE + +    ++  + W VL+ G     R     +  ++ IME  KPD
Sbjct: 290 KCGVVDEAEKIFKAMRVKNVYT-WNVLISGYAMNGRGESALQAFSRMIMEKFKPD 343


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 219/373 (58%), Gaps = 42/373 (11%)

Query: 3   KQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGL------------------------- 36
           ++G++VHA ++    L  ++V+ ++LVDMY KCG                          
Sbjct: 27  REGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAG 86

Query: 37  ------VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSF 86
                 V+++  VF +M++KN ++ + L+  Y Q G+ E  IR+F +++   +    +++
Sbjct: 87  YAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTY 146

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRS------GCKDVIIESALVDLYAKCGCVDFAHQI 140
           G VL AC  +A L+LG++ H   ++           DV + ++LVD+Y K G +D   ++
Sbjct: 147 GNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 206

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F +M  R+ ++WN+MI G+AQNGR ++AL +F+ M      PD V+ IGVLSAC H GL+
Sbjct: 207 FERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLV 266

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           D GR+HF  MT+++ I P  +HY CMVDLLGRAG L+EAE LI++     DS LW  LLG
Sbjct: 267 DEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLG 326

Query: 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
           AC   +N  + ER A ++ EL P+    YVLL N+Y  +G+W D F++R  MK  GV K 
Sbjct: 327 ACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQ 386

Query: 321 PGKSWIEANSKLN 333
           PG SWIE  SK+N
Sbjct: 387 PGCSWIEIGSKMN 399



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 40/233 (17%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCG-------- 132
           D  +   V+ ACAGLAA R G++VH   ++R   +D +++ +ALVD+YAKCG        
Sbjct: 9   DEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCI 68

Query: 133 -----------------------CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
                                   V+ A  +F QM  +N+I WN +I+ +AQNG  EEA+
Sbjct: 69  FDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAI 128

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE---YRIKPKIEHY--N 224
           R+F  +      P H ++  VL+AC ++ ++  G++    + KE   +   P+ + +  N
Sbjct: 129 RLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGN 188

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA---HVAERV 274
            +VD+  + G +++   + E    R + S   +++G     R     H+ ER+
Sbjct: 189 SLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERM 241



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G  PD V+   V+SAC+ +     GR+  A M K  R++  +   N +VD+  + G
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
              EA  + ++   R   S   +L G   +  N   A+ V  +++E      +++ +L  
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKS-ANVEDAQVVFSQMVEKNV---IAWNVLIA 116

Query: 295 VYRAVGRWNDAFKIRTLMKYSGV 317
            Y   G   +A ++   +K   +
Sbjct: 117 AYAQNGEEEEAIRLFVQLKRDSI 139


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/337 (43%), Positives = 212/337 (62%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VH  +I  G    + V +SL+ MY KCG ++E+ ++F  +  ++ V+ +A++ G
Sbjct: 265 LEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTG 324

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I +FR M++     D  +F  VL +C+  A L+ GK +H Q +      D
Sbjct: 325 YAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLD 384

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF-AQNGRGEEALRIFDDMT 176
           V ++SALV +YAKCG +D A  +F QM  RN++ W ++I+G  AQ+GR  EAL  FD M 
Sbjct: 385 VYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMK 444

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G KPD V+F  VLSAC+H+GL++ GRKHF SM  +Y IKP +EHY+C VDLLGRAG L
Sbjct: 445 KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHL 504

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEAE +I +       S+W  LL AC    +    ER A+ +++L PD   +YV L ++Y
Sbjct: 505 EEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIY 564

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A GR+ DA K+R +M+   V K PG+SWIE + K++
Sbjct: 565 AAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVH 601



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 156/267 (58%), Gaps = 10/267 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VH +++  GL     V +SLV MY KCG + ++  +FD++ +KN V+ + L+ G
Sbjct: 164 LQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAG 223

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           Y Q G  +  + +   M++ ++     +F  +L+ C   AAL  GK+VH +YI +SG  +
Sbjct: 224 YAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVH-RYIIQSGYGR 282

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ + ++L+ +Y KCG ++ A ++F  +P R+++TW +M++G+AQ G  +EA+ +F  M 
Sbjct: 283 ELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQ 342

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           + G KPD ++F  VL++CS    +  G++ H   +   Y +   ++  + +V +  + G 
Sbjct: 343 QQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ--SALVSMYAKCGS 400

Query: 236 LEEAETLIENADCRHDSSLWEVLLGAC 262
           +++A +L+ N     +   W  ++  C
Sbjct: 401 MDDA-SLVFNQMSERNVVAWTAIITGC 426



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 141/263 (53%), Gaps = 8/263 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+EVHA ++  G+  N  +E++L+ MY KCG + ++ RVFD +  +N VS +A+++ 
Sbjct: 63  LEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEA 122

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +          + +  M+    + D  +F  +L A      L+LG++VH + +      +
Sbjct: 123 FVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELE 182

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++LV +YAKCG +  A  IF ++P +N++TW  +I+G+AQ G+ + AL + + M +
Sbjct: 183 PRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQ 242

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               P+ ++F  +L  C+    ++ G+K H   +   Y    ++   N ++ +  + G L
Sbjct: 243 AEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGY--GRELWVVNSLITMYCKCGGL 300

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           EEA  L  +   R D   W  ++
Sbjct: 301 EEARKLFSDLPHR-DVVTWTAMV 322



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 106/201 (52%), Gaps = 7/201 (3%)

Query: 49  KKNSVSSSALLQGYCQTGDFESVIRIFREM--EEIDLFS--FGIVLRACAGLAALRLGKE 104
           K  ++++S  +   C+TG  +  + I   M  +   ++S  F  +L+ CA L +L  G+E
Sbjct: 9   KVETLANSRDVSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGRE 68

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
           VH   ++     +  +E+ L+ +YAKCG +  A ++F  +  RN+++W +MI  F    +
Sbjct: 69  VHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNK 128

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHY 223
             EA + ++ M   G KPD V+F+ +L+A ++  L+  G+K H   +     ++P++   
Sbjct: 129 NLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG-- 186

Query: 224 NCMVDLLGRAGLLEEAETLIE 244
             +V +  + G + +A  + +
Sbjct: 187 TSLVGMYAKCGDISKARVIFD 207


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/332 (41%), Positives = 213/332 (64%), Gaps = 7/332 (2%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQ 60
            L  G ++HA ++   +  +  +E++L+  YGKC  +++   +F +M  +++ VS ++++ 
Sbjct: 675  LGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMIS 734

Query: 61   GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            GY  +G     + +   M    +++D F+F  VL ACA +A L  G EVH   +R     
Sbjct: 735  GYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLES 794

Query: 117  DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            DV++ SALVD+YAKCG +D+A + F  MPVRN+ +WNSMISG+A++G G++AL+IF  M 
Sbjct: 795  DVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMK 854

Query: 177  EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            + G  PDHV+F+GVLSACSH+GL+D G KHF SM + Y + P+IEH++CMVDLLGRAG +
Sbjct: 855  QHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDV 914

Query: 237  EEAETLIENADCRHDSSLWEVLLGAC--TTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            ++ E  I+      +  +W  +LGAC     RN  + +R AK ++EL+P   ++YVLL N
Sbjct: 915  KKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSN 974

Query: 295  VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
            ++ A G W D  + R  M+ + VKK  G SW+
Sbjct: 975  MHAAGGNWEDVVEARLAMRKAAVKKDAGCSWV 1006



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 12/259 (4%)

Query: 16  GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
           G   ++ V S+LV+ + + GL+D +  +F +M  +N+V+ + L+ G  +    E   ++F
Sbjct: 381 GFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVF 440

Query: 76  REME---EIDLFSFGIVLRACAGLAAL----RLGKEVHCQYIRRSGCKD--VIIESALVD 126
           +EM+   EI+  S  ++L      + L    R G+EVH  Y+ RSG  D  + I +ALV+
Sbjct: 441 KEMKDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHA-YLFRSGLVDARISIGNALVN 499

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           +Y KC  +D A  +F  MP ++ ++WNSMISG   N R EEA+  F  M   G  P + S
Sbjct: 500 MYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFS 559

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
            I  LS+CS +G +  GR+      K + +   +   N ++ L      + E + +    
Sbjct: 560 VISTLSSCSSLGWLTLGRQIHGEGFK-WGLDLDVSVSNALLTLYAETDSINECQKVFFQM 618

Query: 247 DCRHDSSLWEVLLGACTTF 265
              +D   W   +GA   +
Sbjct: 619 P-EYDQVSWNSFIGALAKY 636



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 147/273 (53%), Gaps = 17/273 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC-GLVDESHRVFDKMLKKNSVSSSALLQ 60
           +K G ++HA +  L    ++++ + L+ MY  C G +D++HRVFD++  +NSV+ ++++ 
Sbjct: 259 IKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIIS 318

Query: 61  GYCQTGDFESVIRIFR--EMEEIDL------FSFGIVLRACAGLA--ALRLGKEVHCQYI 110
            YC+ GD  S  ++F   +ME ++L      ++   ++ A   LA   L L +++  +  
Sbjct: 319 VYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIE 378

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
           +    +D+ + SALV+ +A+ G +D A  IF QM  RN +T N ++ G A+  +GEEA +
Sbjct: 379 KSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAK 438

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH----FASMTKEYRIKPKIEHYNCM 226
           +F +M +   + +  S + +LS  +    +  G++      A + +   +  +I   N +
Sbjct: 439 VFKEMKD-LVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNAL 497

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           V++ G+   ++ A ++ +    + D+  W  ++
Sbjct: 498 VNMYGKCTAIDNACSVFQLMPSK-DTVSWNSMI 529



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 155/314 (49%), Gaps = 11/314 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H +    GL  +V V ++L+ +Y +   ++E  +VF +M + + VS ++ +  
Sbjct: 573 LTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGA 632

Query: 62  YCQ-TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
             +        ++ F EM +     +  +F  +L A +  + L LG ++H   ++ S   
Sbjct: 633 LAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVAD 692

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDDM 175
           D  IE+AL+  Y KC  ++    IF +M   R+ ++WNSMISG+  +G   +A+ +   M
Sbjct: 693 DNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPM 752

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G K D  +F  VLSAC+ +  ++RG +  A   +   ++  +   + +VD+  + G 
Sbjct: 753 MQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRAC-LESDVVVGSALVDMYAKCGK 811

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLD 293
           ++ A    E    R+  S W  ++       +   A ++  ++ +    PD H+++V + 
Sbjct: 812 IDYASRFFELMPVRNIYS-WNSMISGYARHGHGQKALKIFTRMKQHGQSPD-HVTFVGVL 869

Query: 294 NVYRAVGRWNDAFK 307
           +    VG  ++ +K
Sbjct: 870 SACSHVGLVDEGYK 883



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 140/296 (47%), Gaps = 22/296 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L     +H ++   G   +V   ++L+++Y + G +  + ++FD+M +KN VS S L+ G
Sbjct: 156 LYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISG 215

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACA--GLAALRLGKEVHCQYIRRSGC 115
           Y Q    +    +F+ +    L    F+ G  LRAC   G   ++LG ++H    +    
Sbjct: 216 YTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCV 275

Query: 116 KDVIIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            D+I+ + L+ +Y+ C G +D AH++F ++  RN +TWNS+IS + + G    A ++F  
Sbjct: 276 SDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSV 335

Query: 175 MTEGGT----KPDHVSFIG-VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY---NCM 226
           M   G     +P+  +    V +ACS   L D G      M         +      + +
Sbjct: 336 MQMEGVELNLRPNEYTLCSLVTAACS---LADCGLVLLEQMLTRIEKSGFLRDLYVGSAL 392

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
           V+   R GL++ A+ + +    R+  ++  +++G        H  E  AK   E+K
Sbjct: 393 VNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVG----LARQHQGEEAAKVFKEMK 444


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 135/332 (40%), Positives = 213/332 (64%), Gaps = 10/332 (3%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+  ++  +  C NV   ++++  Y +CG + E+  +FDKM K++ VS +A++ GY Q+G
Sbjct: 329 EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSG 388

Query: 67  DFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIR---RSGCKDVI 119
                +R+F +ME     ++  SF   L  CA + AL LGK++H + ++    +GC    
Sbjct: 389 HSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGC---F 445

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+ +Y KCG ++ A+ +F +M  +++++WN+MI+G++++G GE ALR F+ M   G
Sbjct: 446 VGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREG 505

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD  + + VLSACSH GL+D+GR++F +MT++Y + P  +HY CMVDLLGRAGLLE+A
Sbjct: 506 LKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDA 565

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
             L++N     D+++W  LLGA     N  +AE  A KI  ++P+    YVLL N+Y + 
Sbjct: 566 HNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASS 625

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           GRW D  K+R  M+  GVKK+PG SWIE  +K
Sbjct: 626 GRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNK 657



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 117/240 (48%), Gaps = 20/240 (8%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF 84
           ++++  Y + G VD++  VFD+M +KN VS +ALL  Y Q    E    +F+  E   L 
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV 220

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           S+  +L    G    +   E   Q+      +DV+  + ++  YA+ G +D A Q+F + 
Sbjct: 221 SWNCLL---GGFVKKKKIVEAR-QFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDES 276

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           PV+++ TW +M+SG+ QN   EEA  +FD M E     + VS+  +L+     G +   R
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPE----RNEVSWNAMLA-----GYVQGER 327

Query: 205 KHFASMTKE-YRIKP--KIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
                M KE + + P   +  +N M+    + G + EA+ L +    R D   W  ++  
Sbjct: 328 ---MEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKR-DPVSWAAMIAG 383



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 132/268 (49%), Gaps = 10/268 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y + G +DE+ ++FD+   ++  + +A++ GY Q    E    +F +M 
Sbjct: 249 DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP 308

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E +  S+  +L        + + KE+         C++V   + ++  YA+CG +  A  
Sbjct: 309 ERNEVSWNAMLAGYVQGERMEMAKEL----FDVMPCRNVSTWNTMITGYAQCGKISEAKN 364

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +MP R+ ++W +MI+G++Q+G   EALR+F  M   G + +  SF   LS C+ +  
Sbjct: 365 LFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVA 424

Query: 200 IDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           ++ G++    + K  Y     +   N ++ +  + G +EEA  L +    + D   W  +
Sbjct: 425 LELGKQLHGRLVKGGYETGCFVG--NALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTM 481

Query: 259 LGACTTFRNAHVAERVAKKIME--LKPD 284
           +   +      VA R  + +    LKPD
Sbjct: 482 IAGYSRHGFGEVALRFFESMKREGLKPD 509



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 132/282 (46%), Gaps = 16/282 (5%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVE--SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           R  Q +   ++   L  CG+  ++  +  +  Y + G  +E+ RVF +M + +SVS + +
Sbjct: 42  RATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGM 101

Query: 59  LQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           + GY + G+FE   ++F EM E DL S+ ++++       L   +E+      R    DV
Sbjct: 102 ISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPER----DV 157

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
              + ++  YA+ GCVD A  +F +MP +N ++WN+++S + QN + EEA  +F      
Sbjct: 158 CSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENW 217

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
                 VS+  +L        I   R+ F SM         +  +N ++    ++G ++E
Sbjct: 218 AL----VSWNCLLGGFVKKKKIVEARQFFDSMNVR-----DVVSWNTIITGYAQSGKIDE 268

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
           A  L + +  + D   W  ++      R    A  +  K+ E
Sbjct: 269 ARQLFDESPVQ-DVFTWTAMVSGYIQNRMVEEARELFDKMPE 309



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H +++  G      V ++L+ MY KCG ++E++ +F +M  K+ VS + ++ G
Sbjct: 425 LELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAG 484

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  E  +R F  M+    + D  +   VL AC+    +  G++      +  G   
Sbjct: 485 YSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMP 544

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEA 168
                A +VDL  + G ++ AH +   MP   +   W +++     +G  E A
Sbjct: 545 NSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 597


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 142/332 (42%), Positives = 204/332 (61%), Gaps = 5/332 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           KEVH+     GL  ++ V ++LV  Y KCG V  + +VFD M+++N  + + ++ G  Q 
Sbjct: 645 KEVHSHATDAGLV-DLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQH 703

Query: 66  G----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G     F   +++ RE    D  ++  +L ACA   AL   KEVH   +      D+ + 
Sbjct: 704 GCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVG 763

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALV +YAKCG +D A  +F  M  R++ +W  MI G AQ+GRG EAL  F  M   G K
Sbjct: 764 NALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFK 823

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+  S++ VL+ACSH GL+D GR+ F SMT++Y I+P +EHY CMVDLLGRAGLLEEAE 
Sbjct: 824 PNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAEL 883

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
            I N     D + W  LLGAC T+ N  +AE  AK+ ++LKP    +YVLL N+Y A G+
Sbjct: 884 FILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGK 943

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           W     +R++M+  G++K PG+SWIE +++++
Sbjct: 944 WEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIH 975



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 154/306 (50%), Gaps = 20/306 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK++HA +I  G   +V VE++LV+MY KCG ++++  +FDKM+++N +S + ++ G
Sbjct: 235 LKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGG 294

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  +    +F +M+      + +++  +L A A   AL   KEVH   +      D
Sbjct: 295 LAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALD 354

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV +YAK G +D A  +F  M  R++ +W  MI G AQ+GRG+EA  +F  M  
Sbjct: 355 LRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQR 414

Query: 178 GGTKPDHVSFIGVLSA-----CSHMGLIDRGRKHF--ASMTKEYRIKPKIEHYNCMVDLL 230
            G  P+  +++ +L+A      S +  +    KH   A    + RI       N ++ + 
Sbjct: 415 NGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIG------NALIHMY 468

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLS 288
            + G +++A  L+ +  C  D   W  ++G        H A  V  ++ +  L PD    
Sbjct: 469 AKCGSIDDAR-LVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTY 527

Query: 289 YVLLDN 294
             LL+ 
Sbjct: 528 LSLLNT 533



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 145/262 (55%), Gaps = 8/262 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            K+VH  +I  G+  N+ V + L+ +Y +CG +  + +VFDK+LKKN    + ++ GY +
Sbjct: 137 AKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAE 196

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  +R++ +M +     +  ++  +L+AC     L+ GK++H   I+     DV +
Sbjct: 197 YGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRV 256

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           E+ALV++Y KCG ++ A  IF +M  RN+I+W  MI G A  GRG+EA  +F  M   G 
Sbjct: 257 ETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGF 316

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            P+  +++ +L+A +  G ++  ++ H  ++     +  ++   N +V +  ++G +++A
Sbjct: 317 IPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVG--NALVHMYAKSGSIDDA 374

Query: 240 ETLIENADCRHDSSLWEVLLGA 261
             + +    R D   W V++G 
Sbjct: 375 RVVFDGMTER-DIFSWTVMIGG 395



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K VH      G   ++ + ++L+ MY KCG +D++  VFD M  ++ +S +A++ G  Q 
Sbjct: 443 KVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQN 502

Query: 66  GDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G       +F +M++     D  ++  +L       AL    EVH   +      D  + 
Sbjct: 503 GCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVG 562

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SA + +Y +CG +D A  +F ++ VR++ TWN+MI G AQ   G EAL +F  M   G  
Sbjct: 563 SAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFI 622

Query: 182 PDHVSFIGVLSA 193
           PD  +FI +LSA
Sbjct: 623 PDATTFINILSA 634



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 103/186 (55%), Gaps = 4/186 (2%)

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
           ID FS+  +L+ C     + L K+VH   I+    +++ + + L+ +Y +CG +  A Q+
Sbjct: 116 IDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQV 175

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F ++  +N+  W +MI G+A+ G  E+A+R++D M +   +P+ ++++ +L AC     +
Sbjct: 176 FDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNL 235

Query: 201 DRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             G+K  A + +  ++   ++E    +V++  + G +E+A+ + +    R+  S W V++
Sbjct: 236 KWGKKIHAHIIQSGFQSDVRVE--TALVNMYVKCGSIEDAQLIFDKMVERNVIS-WTVMI 292

Query: 260 GACTTF 265
           G    +
Sbjct: 293 GGLAHY 298


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 211/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G E+H ++I   L  +  V  +L+DMY KCG+++++ ++ D++ ++  VS +A++ G
Sbjct: 493 LNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISG 552

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +      E   + F +M E+    D F++  +L  CA L  + LGK++H Q I++    D
Sbjct: 553 FSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD 612

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I S LVD+Y+KCG +     IF + P R+ +TWN+M+ G+AQ+G GEEAL+IF+ M  
Sbjct: 613 AYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQL 672

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP+H +F+ VL AC HMGL+++G  +F SM   Y + P++EHY+C+VD++GR+G + 
Sbjct: 673 ENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVS 732

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LIE      D+ +W  LL  C    N  VAE+ A  I++L+P+   +YVLL N+Y 
Sbjct: 733 KALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYA 792

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G WN+  K+R +M+++G+KK PG SWIE  S+++
Sbjct: 793 NAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVH 828



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 151/260 (58%), Gaps = 6/260 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G +VH   +      N+ V ++++DMYGKCG + E+  VF++M+ +++VS +A++  + 
Sbjct: 394 EGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHE 453

Query: 64  QTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G+ E  + +F  M     E D F++G VL+ACAG  AL  G E+H + I+     D  
Sbjct: 454 QNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSF 513

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +  AL+D+Y+KCG ++ A ++  ++  + +++WN++ISGF+   + EEA + F  M E G
Sbjct: 514 VGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG 573

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PD+ ++  +L  C+++  ++ G++  A + K+  ++      + +VD+  + G +++ 
Sbjct: 574 VDPDNFTYATILDTCANLVTVELGKQIHAQIIKK-ELQSDAYISSTLVDMYSKCGNMQDF 632

Query: 240 ETLIENADCRHDSSLWEVLL 259
           + + E A  R D   W  ++
Sbjct: 633 QLIFEKAPNR-DFVTWNAMV 651



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 145/262 (55%), Gaps = 8/262 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H   + +G   +VV  S+L+DMY KC  +D S + F  M +KN VS SA++ G  Q
Sbjct: 193 GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQ 252

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             D    + +F+EM++    +   +F  V R+CAGL+ALRLG ++H   ++     DV+I
Sbjct: 253 NDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVI 312

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A +D+Y KC  +  A ++F  +P  NL ++N++I G+A++ +G EAL +F  + + G 
Sbjct: 313 GTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGL 372

Query: 181 KPDHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             D VS  G   AC+ + G ++  + H  SM      +  I   N ++D+ G+ G L EA
Sbjct: 373 GLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKS--LCQSNICVANAILDMYGKCGALVEA 430

Query: 240 ETLIENADCRHDSSLWEVLLGA 261
             + E    R D+  W  ++ A
Sbjct: 431 CLVFEEMVSR-DAVSWNAIIAA 451



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 149/299 (49%), Gaps = 8/299 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++H   +      +VV+ ++ +DMY KC  + ++ ++F+ +   N  S +A++ G
Sbjct: 291 LRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVG 350

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y ++      + +FR +++    +D  S     RACA +     G +VH   ++     +
Sbjct: 351 YARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSN 410

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +A++D+Y KCG +  A  +F +M  R+ ++WN++I+   QNG  E+ L +F  M +
Sbjct: 411 ICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQ 470

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD  ++  VL AC+    ++ G +    + K  R+         ++D+  + G++E
Sbjct: 471 SGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKS-RLGLDSFVGIALIDMYSKCGMME 529

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPDCHLSYVLLDN 294
           +AE L +          W  ++   +  + +  A++   K++E+   PD      +LD 
Sbjct: 530 KAEKLHDRL-AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDT 587



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 35/236 (14%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+ HA++I       V V + L+ MY KC  ++ + +VFD M ++++VS +A+L GY  
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 65  TGDFESVIRIFREMEE----------------------IDLF-------------SFGIV 89
            GD     ++F  M E                      ID+F             +F +V
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L++C+ L     G ++H   ++     DV+  SAL+D+YAKC  +D + Q F  MP +N 
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNW 240

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           ++W+++I+G  QN      L +F +M + G      +F  V  +C+ +  +  G +
Sbjct: 241 VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQ 296



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 4/114 (3%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +F  + + C+   AL  GK+ H + I       V + + L+ +Y KC  ++FA ++F  M
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           P R+ ++WN+M+ G+A  G    A ++FD M E     D VS+  ++S   H G
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPE----RDVVSWNSLISGYLHNG 153


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 136/332 (40%), Positives = 212/332 (63%), Gaps = 6/332 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++H  +I +GL  +V V S+L+D+Y + G ++ + RVFD+M+  + V  S+++ G+ Q 
Sbjct: 83  RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQN 142

Query: 66  GDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
            D +  +R+F+ M+         +   VLRAC GLA L LG++VH   ++    +D+I+ 
Sbjct: 143 SDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYD--QDLILN 200

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +AL+D+Y KCG ++ A+ +F++M  +++I+W++MI+G AQNG  +EAL++F+ M   G K
Sbjct: 201 NALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIK 260

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P++V+ +GVL ACSH GL++ G  +F SM + + I P  EHY CM+DLLGRAG L EA  
Sbjct: 261 PNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVD 320

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           LI   +C  D+  W  LL AC   RN  VA   AK+I+ L P    +YVLL N+Y    R
Sbjct: 321 LINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQR 380

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           WND  ++R  M   G+KK PG SWIE + +++
Sbjct: 381 WNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIH 412



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 140/266 (52%), Gaps = 17/266 (6%)

Query: 27  LVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT----GDFESVIRIFREMEEID 82
           L++MY K GL+ ++  VFDKM  +N VS + ++  Y          E ++ + RE    +
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
           +F++  VLRAC GL  LR   ++HC  I+     DV + SAL+D+Y++ G ++ A ++F 
Sbjct: 66  MFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFD 122

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           +M   +L+ W+S+I+GFAQN  G+EALR+F  M   G      +   VL AC+ + L++ 
Sbjct: 123 EMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLEL 182

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           GR+    + K       +   N ++D+  + G LE+A  +        D   W  ++   
Sbjct: 183 GRQVHVHVLK---YDQDLILNNALLDMYCKCGSLEDANAVFVRM-VEKDVISWSTMIAGL 238

Query: 263 TTFRNAHVAERV----AKKIMELKPD 284
              +N +  E +    + K++ +KP+
Sbjct: 239 A--QNGYSKEALKLFESMKVLGIKPN 262


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 142/332 (42%), Positives = 212/332 (63%), Gaps = 4/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++H  +I LG   ++++ ++L+ MY KCG++D++ R FD M  K+SVS SA++ G
Sbjct: 328 LSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSG 387

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G+    + IFR M+    + DL +   VL AC+ LAAL+ G   H   I R    D
Sbjct: 388 CVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATD 447

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            +I +AL+D+Y+KCG + FA ++F +M   ++++WN+MI G+  +G G EAL +F D+  
Sbjct: 448 TLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLA 507

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++FI +LS+CSH GL+  GR  F +M++++ I P++EH  CMVD+LGRAGL++
Sbjct: 508 LGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLID 567

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I N     D  +W  LL AC   +N  + E V+KKI  L P+   ++VLL N+Y 
Sbjct: 568 EAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYS 627

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           A GRW+DA  IR   K  G+KK+PG SWIE N
Sbjct: 628 AAGRWDDAAHIRITQKDWGLKKIPGCSWIEIN 659



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 135/264 (51%), Gaps = 9/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +H   +       VVV + L+DMY KC  +  + ++FD M  +N VS SA++ G
Sbjct: 226 LGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGG 285

Query: 62  YCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y  +   +  + +F +M   D       + G VLRACA L  L  G+++HC  I+     
Sbjct: 286 YVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVL 345

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+++ + L+ +YAKCG +D A + F  M  ++ +++++++SG  QNG    AL IF  M 
Sbjct: 346 DILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQ 405

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
             G  PD  + +GVL ACSH+  +  G   H   + + +     I   N ++D+  + G 
Sbjct: 406 LSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI--CNALIDMYSKCGK 463

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           +  A  +    D RHD   W  ++
Sbjct: 464 ISFAREVFNRMD-RHDIVSWNAMI 486



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 152/290 (52%), Gaps = 9/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G E+H+     GL  +V V ++LVD Y KCG++ E+ R+F  M  ++ V+ +A++ G
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  +  +++  +M+E  +     +   VL       AL  GK +H   +RRS    
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNG 244

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT- 176
           V++ + L+D+YAKC C+ +A +IF  M VRN ++W++MI G+  +   +EAL +FD M  
Sbjct: 245 VVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMIL 304

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +    P  V+   VL AC+ +  + RGRK    + K   +   I   N ++ +  + G++
Sbjct: 305 KDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVL-DILLGNTLLSMYAKCGVI 363

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK--KIMELKPD 284
           ++A    +  + + DS  +  ++  C    NA VA  + +  ++  + PD
Sbjct: 364 DDAIRFFDXMNPK-DSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 143/322 (44%), Gaps = 17/322 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L + K++H   +      +  V   L  +Y  C  V  + R+FD++   + +  + +++ 
Sbjct: 24  LTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRA 83

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G F+  I ++  M  + +    +++  VL+AC+GL A+  G E+H          D
Sbjct: 84  YAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESD 143

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +ALVD YAKCG +  A ++F  M  R+++ WN+MI+G +  G  ++A+++   M E
Sbjct: 144 VFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQE 203

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+  + +GVL        +  G+       +       +     ++D+  +   L 
Sbjct: 204 EGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR-SFDNGVVVGTGLLDMYAKCQCLL 262

Query: 238 EAETLIENADCRHDSSLWEVLLGA-----CTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
            A  + +    R++ S W  ++G      C         + + K  M+  P      V L
Sbjct: 263 YARKIFDVMGVRNEVS-WSAMIGGYVXSDCMKEALELFDQMILKDAMDPTP------VTL 315

Query: 293 DNVYRAVGRWNDAFKIRTLMKY 314
            +V RA  +  D  + R L  Y
Sbjct: 316 GSVLRACAKLTDLSRGRKLHCY 337



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 87/177 (49%), Gaps = 2/177 (1%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L AC    +L   K++H  +++ +   D  +   L  LY  C  V  A ++F ++P  +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +I WN +I  +A NG  + A+ ++  M   G +P+  ++  VL ACS +  I+ G +   
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           S  K + ++  +     +VD   + G+L EA+ L  +   R D   W  ++  C+ +
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLY 188


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  280 bits (717), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 139/337 (41%), Positives = 212/337 (62%), Gaps = 4/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H +VI  GL  +  V ++LV+MY  CG V ++ +VFD+M +++ V+ +A++ G
Sbjct: 563 LDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGG 622

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y      +  +++F  ++E     D  ++  +L ACA   +L   KE+H   ++     D
Sbjct: 623 YAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSD 682

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +ALV  YAKCG    A  +F +M  RN+I+WN++I G AQ+GRG++ L++F+ M  
Sbjct: 683 TSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKM 742

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+F+ +LSACSH GL++ GR++F SM++++ I P IEHY CMVDLLGRAG L+
Sbjct: 743 EGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLD 802

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E E LI+    + ++ +W  LLGAC    N  VAER A+  ++L PD    YV L ++Y 
Sbjct: 803 EVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYA 862

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNH 334
           A G W+ A K+R LM+  GV K PG+SWIE   KL++
Sbjct: 863 AAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHY 899



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 171/321 (53%), Gaps = 9/321 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK VH+ ++  G   ++ V ++LV MY KCG   +  +VF+K++ ++ ++ + ++ G
Sbjct: 361 LKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 420

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G++E    I+ +M+   +     ++ I+L AC    AL  G+E+H + ++     D
Sbjct: 421 LAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFD 480

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + +++AL+ +YA+CG +  A  +F +M  +++I+W +MI G A++G G EAL +F DM +
Sbjct: 481 ISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQ 540

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+ V++  +L+ACS    +D GR+       E  +       N +V++    G ++
Sbjct: 541 AGLKPNRVTYTSILNACSSPAALDWGRR-IHQQVIEAGLATDAHVANTLVNMYSMCGSVK 599

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNV 295
           +A  + +    R D   +  ++G          A ++  ++ E  LKPD  ++Y+ + N 
Sbjct: 600 DARQVFDRMTQR-DIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPD-KVTYINMLNA 657

Query: 296 YRAVGRWNDAFKIRTLMKYSG 316
               G    A +I +L+   G
Sbjct: 658 CANSGSLEWAKEIHSLVLKDG 678



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 142/263 (53%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+E+H + +   L  +V V + +++MY KCG + E+  VFDKM  K+ VS + ++ G
Sbjct: 260 LECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGG 319

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  E    IF++M++     +  ++  VL A +G AAL+ GK VH   +      D
Sbjct: 320 YADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESD 379

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV +YAKCG      Q+F ++  R+LI WN+MI G A+ G  EEA  I+  M  
Sbjct: 380 LAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQR 439

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+ ++++ +L+AC +   +  GR+  + + K+      I   N ++ +  R G ++
Sbjct: 440 EGMMPNKITYVILLNACVNPTALHWGREIHSRVVKD-GFMFDISVQNALISMYARCGSIK 498

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +A  L  N   R D   W  ++G
Sbjct: 499 DARLLF-NKMVRKDIISWTAMIG 520



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 153/304 (50%), Gaps = 17/304 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALL 59
           L  G+EVH  +I      +    ++L++MY +CG ++E+ +V++K+   ++   S +A++
Sbjct: 157 LVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMV 216

Query: 60  QGYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY Q G  E  +++ REM++  L     +   +L +C   +AL  G+E+H + ++    
Sbjct: 217 VGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLL 276

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + + ++++YAKCG +  A ++F +M  +++++W  +I G+A  G  E A  IF  M
Sbjct: 277 FDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKM 336

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGR---KHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            + G  P+ +++I VL+A S    +  G+    H  +   E  +         +V +  +
Sbjct: 337 QQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVG----TALVKMYAK 392

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
            G  ++   + E    R D   W  ++G      N   A  +  ++    + P+  ++YV
Sbjct: 393 CGSYKDCRQVFEKLVNR-DLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPN-KITYV 450

Query: 291 LLDN 294
           +L N
Sbjct: 451 ILLN 454



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 112/213 (52%), Gaps = 9/213 (4%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF--LQMPV 146
           +L+ C  +  L  G+EVH   I+     D    +AL+++Y +CG ++ A Q++  L    
Sbjct: 147 MLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTE 206

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK- 205
           R + +WN+M+ G+ Q G  EEAL++  +M + G      + + +LS+C     ++ GR+ 
Sbjct: 207 RTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREI 266

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           H  +M  + R+   +   NC++++  + G + EA  + +  + +   S W +++G     
Sbjct: 267 HVEAM--KARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVS-WTIIIGGYADC 323

Query: 266 RNAHVAERVAKKIME--LKPDCHLSYVLLDNVY 296
            ++ +A  + +K+ +  + P+  ++Y+ + N +
Sbjct: 324 GHSEIAFEIFQKMQQEGVVPN-RITYINVLNAF 355


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  280 bits (717), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 138/335 (41%), Positives = 207/335 (61%), Gaps = 4/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+GKE+H  +I  G   NV V S+LVDMY KC  V  +  VF +M  KN VS +A+L G
Sbjct: 286 LKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVG 345

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  +R+F +M+    E D F+ G V+ +CA LA+L  G + HCQ +       
Sbjct: 346 YGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISF 405

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+ LY KCG ++ ++Q+F +M  R+ ++W +++SG+AQ G+  E + +F+ M  
Sbjct: 406 ITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLV 465

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+FI VLSACS  GL++RG+++F SM K++ I P  +HY CM+DL GRAG LE
Sbjct: 466 QGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLE 525

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  I       DS  W  LL +C  + N  + +  A+ ++EL P     Y+LL ++Y 
Sbjct: 526 EAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYA 585

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           A G+W++  ++R  M+  G +K PG SWI+  SK+
Sbjct: 586 AKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKV 620



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 167/331 (50%), Gaps = 39/331 (11%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN------------- 51
           G+++H +++  G    V V SSLVDMY K GLV  + +VFD++ ++N             
Sbjct: 157 GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLR 216

Query: 52  ------------------SVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIV 89
                             S+S + ++ G  Q G     + +FR+M +    +D ++FG V
Sbjct: 217 SGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSV 276

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L AC GL AL+ GKE+H   IR     +V + SALVD+Y KC  V +A  +F +M  +N+
Sbjct: 277 LTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNV 336

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ++W +M+ G+ QNG  EEA+R+F DM   G +PD  +   V+S+C+++  ++ G + F  
Sbjct: 337 VSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQ-FHC 395

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
                 +   I   N ++ L G+ G +E++  L +    R + S W  L+     F  A+
Sbjct: 396 QALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVS-WTALVSGYAQFGKAN 454

Query: 270 VAERVAKKIM--ELKPDCHLSYVLLDNVYRA 298
               + ++++   LKPD      +L    RA
Sbjct: 455 ETIDLFERMLVQGLKPDAVTFIAVLSACSRA 485



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 112/269 (41%), Gaps = 67/269 (24%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           Q K++H  +I         + ++L++ Y K G +  +  VFDKM + NS S + +L  Y 
Sbjct: 23  QAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYS 82

Query: 64  QTGDFESVIRIFREMEE------------------------------------IDLFSFG 87
           ++GD  ++  IF  M                                      ++  +F 
Sbjct: 83  KSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFS 142

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
            +L   +    + LG+++H Q ++      V + S+LVD+YAK G V  A Q+F ++  R
Sbjct: 143 TMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQER 202

Query: 148 NL-------------------------------ITWNSMISGFAQNGRGEEALRIFDDMT 176
           N+                               I+W +MI+G  QNG   EA+ +F DM 
Sbjct: 203 NVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMR 262

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           + G   D  +F  VL+AC  +  +  G++
Sbjct: 263 QEGMAMDQYTFGSVLTACGGLRALKEGKE 291



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 4/136 (2%)

Query: 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
            K++HC  I+     +  + + L++ Y+K G + +A  +F +MP  N  +WN+M+S +++
Sbjct: 24  AKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSK 83

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
           +G       IF  M       D VS+  ++S     G +    K + SM K+  +     
Sbjct: 84  SGDLSTMQEIFSIM----PNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRI 139

Query: 222 HYNCMVDLLGRAGLLE 237
            ++ M+ L+   G ++
Sbjct: 140 TFSTMLLLVSSQGCVD 155


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  280 bits (716), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/332 (42%), Positives = 213/332 (64%), Gaps = 4/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++H  +I LG   ++++ ++L+ MY KCG++D++ R FD+M  K+SVS SA++ G
Sbjct: 328 LSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSG 387

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G+    + IFR M+    + DL +   VL AC+ LAAL+ G   H   I R    D
Sbjct: 388 CVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATD 447

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            +I +AL+D+Y+KCG + FA ++F +M   ++++WN+MI G+  +G G EAL +F D+  
Sbjct: 448 TLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLA 507

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++FI +LS+CSH GL+  GR  F +M++++ I P++EH  CMVD+LGRAGL++
Sbjct: 508 LGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLID 567

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I N     D  +W  LL AC   +N  + E V+KKI  L P+   ++VLL N+Y 
Sbjct: 568 EAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYS 627

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           A GRW+DA  IR   K  G+KK+PG SWIE N
Sbjct: 628 AAGRWDDAAHIRITQKDWGLKKIPGCSWIEIN 659



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 136/264 (51%), Gaps = 9/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +H   +       VVV + L+DMY KC  +  + ++FD M  +N VS SA++ G
Sbjct: 226 LGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGG 285

Query: 62  YCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y  +   +  + +F +M   D       + G VLRACA L  L  G+++HC  I+     
Sbjct: 286 YVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVL 345

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+++ + L+ +YAKCG +D A + F +M  ++ +++++++SG  QNG    AL IF  M 
Sbjct: 346 DILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQ 405

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
             G  PD  + +GVL ACSH+  +  G   H   + + +     I   N ++D+  + G 
Sbjct: 406 LSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI--CNALIDMYSKCGK 463

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           +  A  +    D RHD   W  ++
Sbjct: 464 ISFAREVFNRMD-RHDIVSWNAMI 486



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 152/290 (52%), Gaps = 9/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G E+H+     GL  +V V ++LVD Y KCG++ E+ R+F  M  ++ V+ +A++ G
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  +  +++  +M+E  +     +   VL       AL  GK +H   +RRS    
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNG 244

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT- 176
           V++ + L+D+YAKC C+ +A +IF  M VRN ++W++MI G+  +   +EAL +FD M  
Sbjct: 245 VVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMIL 304

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +    P  V+   VL AC+ +  + RGRK    + K   +   I   N ++ +  + G++
Sbjct: 305 KDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVL-DILLGNTLLSMYAKCGVI 363

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK--KIMELKPD 284
           ++A    +  + + DS  +  ++  C    NA VA  + +  ++  + PD
Sbjct: 364 DDAIRFFDEMNPK-DSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 19/323 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L + K++H   +      +  V   L  +Y  C  V  + R+FD++   + +  + +++ 
Sbjct: 24  LTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRA 83

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G F+  I ++  M  + +    +++  VL+AC+GL A+  G E+H          D
Sbjct: 84  YAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESD 143

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +ALVD YAKCG +  A ++F  M  R+++ WN+MI+G +  G  ++A+++   M E
Sbjct: 144 VFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQE 203

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+  + +GVL        +  G+       +       +     ++D+  +   L 
Sbjct: 204 EGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR-SFDNGVVVGTGLLDMYAKCQCLL 262

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME------LKPDCHLSYVL 291
            A  + +    R++ S W  ++G        +VA    K+ +E      LK     + V 
Sbjct: 263 YARKIFDVMGVRNEVS-WSAMIG-------GYVASDCMKEALELFDQMILKDAMDPTPVT 314

Query: 292 LDNVYRAVGRWNDAFKIRTLMKY 314
           L +V RA  +  D  + R L  Y
Sbjct: 315 LGSVLRACAKLTDLSRGRKLHCY 337



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 87/177 (49%), Gaps = 2/177 (1%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L AC    +L   K++H  +++ +   D  +   L  LY  C  V  A ++F ++P  +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +I WN +I  +A NG  + A+ ++  M   G +P+  ++  VL ACS +  I+ G +   
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           S  K + ++  +     +VD   + G+L EA+ L  +   R D   W  ++  C+ +
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLY 188


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 219/368 (59%), Gaps = 37/368 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDES--------------------- 40
           L+ GK+VH+ V    +  N+V+E++++DMY  CG +D +                     
Sbjct: 235 LRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSG 294

Query: 41  ----------HRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSF 86
                        FDKM +K+ VS +A++ GY ++  F+  + +FR M+    + D F+ 
Sbjct: 295 FTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTM 354

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             VL ACA L AL LG+ +   YI R+  K D+ + +AL+D+Y KCG VD A  IF +M 
Sbjct: 355 VSVLTACAHLGALELGEWIR-TYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS 413

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R+  TW +MI G A NG GE+AL +F +M +    PD +++IGVLSAC+H GL+D+GRK
Sbjct: 414 QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRK 473

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +F  MT ++ I+P I HY C+VDLL RAG L+EA  +IEN   + +S +W  LL  C  +
Sbjct: 474 YFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVY 533

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           R + +AE V K+I+EL+PD    YVLL N+Y A  RWND  ++R +M   G+KK PG S 
Sbjct: 534 RESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSL 593

Query: 326 IEANSKLN 333
           IE N +++
Sbjct: 594 IEMNGRVH 601



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 152/296 (51%), Gaps = 43/296 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H  V+  GL  NV V ++LV MY  CG +D +  VFD   K + ++ + ++  
Sbjct: 134 LEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISA 193

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + G FE   R+F  ME+  +     +  +VL AC+ L  LR GK+VH  Y++   CK 
Sbjct: 194 YNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVH-SYVK--NCKV 250

Query: 117 --DVIIESALVDLYAKCGC-------------------------------VDFAHQIFLQ 143
             ++++E+A++D+YA CG                                +D A   F +
Sbjct: 251 ESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDK 310

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP ++ ++W +MI G+ ++ R +EAL +F +M     KPD  + + VL+AC+H+G ++ G
Sbjct: 311 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 370

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            +   +     +IK  +   N ++D+  + G +++AE++      R D   W  ++
Sbjct: 371 -EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR-DKFTWTAMI 424



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 157/324 (48%), Gaps = 13/324 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM--YGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           + Q ++VH + I  GL  N V+++ ++      + G    + R+FD++ + N    + ++
Sbjct: 31  MDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMI 90

Query: 60  QGYCQTGDFESV-----IRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           +GY +  DF  +     + + R   + D ++F  + +      AL  G+++H   ++   
Sbjct: 91  RGYSRL-DFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGL 149

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             +V + +ALV +Y  CG +D A  +F   P  ++ITWN +IS + + G+ EE+ R+F  
Sbjct: 150 QYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLV 209

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M +    P  V+ + VLSACS +  +  G+K   S  K  +++  +   N M+D+    G
Sbjct: 210 MEDKQVLPTTVTLVLVLSACSKLKDLRTGKK-VHSYVKNCKVESNLVLENAMIDMYADCG 268

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            ++ A  +  + + R D   W  ++   T      VA     K+ E     ++S+  + +
Sbjct: 269 EMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEIDVARNYFDKMPEKD---YVSWTAMID 324

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVK 318
            Y    R+ +A ++   M+ + VK
Sbjct: 325 GYIRSNRFKEALELFRNMQATNVK 348


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  280 bits (715), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 139/330 (42%), Positives = 209/330 (63%), Gaps = 6/330 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VHA  +  GL  +V V SSL+D Y K G +D   RVFD+M+ ++ V  ++++ G+ Q+GD
Sbjct: 190 VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGD 249

Query: 68  FESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
               I +F  M++    S       VLRAC G+  L  G++VH   ++    +D+I+ +A
Sbjct: 250 GVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYD--RDLILHNA 307

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L+D+Y KCG ++ A  +F +MP R++I+W++M+SG AQNG+  EALR+FD M   G  P+
Sbjct: 308 LLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPN 367

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
           HV+ +GVL ACSH GL++ G  +F SM + + I+P+ EH+NCMVDLLGRAG L+EA   I
Sbjct: 368 HVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFI 427

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
                  DS +W  LLGAC   +NA +A   A++I++L+PD   + VLL N Y  + +W 
Sbjct: 428 HGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLSNTYADLRQWT 487

Query: 304 DAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           DA K    M+  G++K PG+SWIE   +++
Sbjct: 488 DAEKPWKAMRDRGMRKEPGRSWIELEKRVH 517



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 129/258 (50%), Gaps = 13/258 (5%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT- 65
           E H  +   G  G + V +SL  MY K GL+D++ R+FD M  +N V+ + ++       
Sbjct: 91  EAHGPLPHDG-AGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASAD 149

Query: 66  GDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  +  +R    M       + ++F  VL AC     L     VH   ++     DV + 
Sbjct: 150 GRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGML---TAVHASTVKAGLDSDVFVR 206

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           S+L+D Y K G +D   ++F +M  R+L+ WNS+I+GFAQ+G G  A+ +F  M + G  
Sbjct: 207 SSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFS 266

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            +  +   VL AC+ M +++ GR+  A + K  R    +  +N ++D+  + G LE+A+ 
Sbjct: 267 SNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYDR---DLILHNALLDMYCKCGSLEDADA 323

Query: 242 LIENADCRHDSSLWEVLL 259
           L      R D   W  ++
Sbjct: 324 LFHRMPQR-DVISWSTMV 340


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  280 bits (715), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 142/335 (42%), Positives = 214/335 (63%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  V + +   GL  N+ + + L+DMY KCG ++E+  +F+K+  KN VS + ++ G
Sbjct: 277 LQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGG 336

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIR--RSGC 115
           Y     ++  + +FR M + ++     +F  +L ACA L AL LGK VH    +  +S  
Sbjct: 337 YTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMK 396

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             V + ++L+D+YAKCG +  A +IF  M  ++L TWN+MISGFA +G  + AL +F  M
Sbjct: 397 NTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRM 456

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           T  G  PD ++F+GVL+AC H GL+  GR++F+SM ++Y++ PK+ HY CM+DL GRAGL
Sbjct: 457 TSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGL 516

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            +EAETL++N + + D ++W  LLGAC   R   +AE VAK + EL+P+   +YVLL N+
Sbjct: 517 FDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNI 576

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           Y   GRW D  KIRT +  + +KK+PG S IE +S
Sbjct: 577 YAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDS 611



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 148/295 (50%), Gaps = 42/295 (14%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCG---------------------------- 35
           +GK+VHA V+ LGL  N  V +SL++MY + G                            
Sbjct: 146 EGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYA 205

Query: 36  ---LVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSFGI 88
               +DE+  +FD++  ++ VS +A++ GY Q+G  E  +  F EM       ++ +   
Sbjct: 206 SKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLS 265

Query: 89  VLRACA-GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           VL ACA   ++L+LG  V      R    ++ + + L+D+Y KCG ++ A  +F ++  +
Sbjct: 266 VLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDK 325

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           N+++WN MI G+      +EAL +F  M +    P+ V+F+ +L AC+++G +D G+   
Sbjct: 326 NVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVH 385

Query: 208 ASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL--WEVLL 259
           A + K  + +K  +  +  ++D+  + G L  A+ +    DC +  SL  W  ++
Sbjct: 386 AYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIF---DCMNTKSLATWNAMI 437



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 137/299 (45%), Gaps = 38/299 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESH--RVFDKMLKKNSVSSSALL 59
           L+  K++H+++I  GL       S L++        D S+   +F  +   N V  + ++
Sbjct: 41  LQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMI 100

Query: 60  QGYCQTGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR---- 111
           +G   +       E  + +     E + ++F  + ++C  +     GK+VH   ++    
Sbjct: 101 RGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLE 160

Query: 112 ---------------------------RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
                                      +S  +D +  +AL+  YA  G +D A ++F ++
Sbjct: 161 HNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEI 220

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           PVR++++WN+MISG+AQ+GR EEA+  F++M      P+  + + VLSAC+  G   +  
Sbjct: 221 PVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLG 280

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
               S  ++  +   I   N ++D+  + G LEEA  L E    ++  S W V++G  T
Sbjct: 281 NWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVS-WNVMIGGYT 338


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  280 bits (715), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 211/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G E+H ++I   +  +  V  +L+DMY KCG+++++ ++ D++ ++  VS +A++ G
Sbjct: 430 LNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISG 489

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +      E   + F +M E+    D F++  +L  CA L  + LGK++H Q I++    D
Sbjct: 490 FSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD 549

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I S LVD+Y+KCG +     IF + P R+ +TWN+M+ G+AQ+G GEEAL+IF+ M  
Sbjct: 550 AYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQL 609

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP+H +F+ VL AC HMGL+++G  +F SM   Y + P++EHY+C+VD++GR+G + 
Sbjct: 610 ENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVS 669

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LIE      D+ +W  LL  C    N  VAE+ A  I++L+P+   +YVLL N+Y 
Sbjct: 670 KALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYA 729

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G WN+  K+R +M+++G+KK PG SWIE  S+++
Sbjct: 730 NAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVH 765



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 151/260 (58%), Gaps = 6/260 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G +VH   +      N+ V ++++DMYGKCG + E+  VF++M+ +++VS +A++  + 
Sbjct: 331 EGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHE 390

Query: 64  QTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G+ E  + +F  M     E D F++G VL+ACAG  AL  G E+H + I+     D  
Sbjct: 391 QNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSF 450

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +  AL+D+Y+KCG ++ A ++  ++  + +++WN++ISGF+   + EEA + F  M E G
Sbjct: 451 VGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG 510

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PD+ ++  +L  C+++  ++ G++  A + K+  ++      + +VD+  + G +++ 
Sbjct: 511 VDPDNFTYATILDTCANLVTVELGKQIHAQIIKK-ELQSDAYISSTLVDMYSKCGNMQDF 569

Query: 240 ETLIENADCRHDSSLWEVLL 259
           + + E A  R D   W  ++
Sbjct: 570 QLIFEKAPNR-DFVTWNAMV 588



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 147/295 (49%), Gaps = 9/295 (3%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCG-LVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++H   +      +VV+ ++ +DMY KC  L D S+++F+ +   N  S +A++ GY ++
Sbjct: 232 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARS 291

Query: 66  GDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
                 + +FR +++    +D  S     RACA +     G +VH   ++     ++ + 
Sbjct: 292 DKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVA 351

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +A++D+Y KCG +  A  +F +M  R+ ++WN++I+   QNG  E+ L +F  M + G +
Sbjct: 352 NAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGME 411

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD  ++  VL AC+    ++ G +    + K  R+         ++D+  + G++E+AE 
Sbjct: 412 PDEFTYGSVLKACAGWQALNCGMEIHNRIIKS-RMGLDSFVGIALIDMYSKCGMMEKAEK 470

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPDCHLSYVLLDN 294
           L +          W  ++   +  + +  A++   K++E+   PD      +LD 
Sbjct: 471 LHDRL-AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDT 524



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 146/332 (43%), Gaps = 79/332 (23%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+ HA++I       V V + L+ MY KC  +  + +VFD M ++++VS +A+L GY  
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 65  TGDFESVIRIFREMEE-----IDLF--------------SFGIVLRACAGLAALRLGKEV 105
            GD     ++F  M       ++LF              +F +VL++C+ L     G ++
Sbjct: 121 RGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQI 180

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCV------------------------------- 134
           H   ++     DV+  SAL+D+YAKC CV                               
Sbjct: 181 HGLAVKMGFDCDVVTGSALLDMYAKC-CVQNDDLRGGLELFKEMQKAGVGALQLHGHALK 239

Query: 135 -DF-----------------------AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
            DF                       ++Q+F  +P  NL ++N++I G+A++ +G EAL 
Sbjct: 240 TDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALG 299

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
           +F  + + G   D VS  G   AC+ + G ++  + H  SM      +  I   N ++D+
Sbjct: 300 MFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKS--LCQSNICVANAILDM 357

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            G+ G L EA  + E    R D+  W  ++ A
Sbjct: 358 YGKCGALVEACLVFEEMVSR-DAVSWNAIIAA 388



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +F  + + C+   AL  GK+ H + I       V + + L+ +Y KC  + FA ++F  M
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMT---------------EGGTKPDHVSFIG 189
           P R+ ++WN+M+ G+A  G    A ++FD M                  GT  D  +F  
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAV 163

Query: 190 VLSACSHM 197
           VL +CS +
Sbjct: 164 VLKSCSSL 171


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  280 bits (715), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 219/368 (59%), Gaps = 37/368 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDES--------------------- 40
           L+ GK+VH+ V    +  N+V+E++++DMY  CG +D +                     
Sbjct: 256 LRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSG 315

Query: 41  ----------HRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSF 86
                        FDKM +K+ VS +A++ GY ++  F+  + +FR M+    + D F+ 
Sbjct: 316 FTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTM 375

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             VL ACA L AL LG+ +   YI R+  K D+ + +AL+D+Y KCG VD A  IF +M 
Sbjct: 376 VSVLTACAHLGALELGEWIR-TYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS 434

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R+  TW +MI G A NG GE+AL +F +M +    PD +++IGVLSAC+H GL+D+GRK
Sbjct: 435 QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRK 494

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +F  MT ++ I+P I HY C+VDLL RAG L+EA  +IEN   + +S +W  LL  C  +
Sbjct: 495 YFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVY 554

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           R + +AE V K+I+EL+PD    YVLL N+Y A  RWND  ++R +M   G+KK PG S 
Sbjct: 555 RESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSL 614

Query: 326 IEANSKLN 333
           IE N +++
Sbjct: 615 IEMNGRVH 622



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 152/296 (51%), Gaps = 43/296 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H  V+  GL  NV V ++LV MY  CG +D +  VFD   K + ++ + ++  
Sbjct: 155 LEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISA 214

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + G FE   R+F  ME+  +     +  +VL AC+ L  LR GK+VH  Y++   CK 
Sbjct: 215 YNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVH-SYVK--NCKV 271

Query: 117 --DVIIESALVDLYAKCGC-------------------------------VDFAHQIFLQ 143
             ++++E+A++D+YA CG                                +D A   F +
Sbjct: 272 ESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDK 331

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP ++ ++W +MI G+ ++ R +EAL +F +M     KPD  + + VL+AC+H+G ++ G
Sbjct: 332 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 391

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            +   +     +IK  +   N ++D+  + G +++AE++      R D   W  ++
Sbjct: 392 -EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR-DKFTWTAMI 445



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 157/324 (48%), Gaps = 13/324 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM--YGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           + Q ++VH + I  GL  N V+++ ++      + G    + R+FD++ + N    + ++
Sbjct: 52  MDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMI 111

Query: 60  QGYCQTGDFESV-----IRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           +GY +  DF  +     + + R   + D ++F  + +      AL  G+++H   ++   
Sbjct: 112 RGYSRL-DFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGL 170

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             +V + +ALV +Y  CG +D A  +F   P  ++ITWN +IS + + G+ EE+ R+F  
Sbjct: 171 QYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLV 230

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M +    P  V+ + VLSACS +  +  G+K   S  K  +++  +   N M+D+    G
Sbjct: 231 MEDKQVLPTTVTLVLVLSACSKLKDLRTGKK-VHSYVKNCKVESNLVLENAMIDMYADCG 289

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            ++ A  +  + + R D   W  ++   T      VA     K+ E     ++S+  + +
Sbjct: 290 EMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEIDVARNYFDKMPEKD---YVSWTAMID 345

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVK 318
            Y    R+ +A ++   M+ + VK
Sbjct: 346 GYIRSNRFKEALELFRNMQATNVK 369


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  280 bits (715), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 134/333 (40%), Positives = 207/333 (62%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VHA +I      +  V ++LVDMY K   ++++   FD+++ ++  S + ++ GY Q
Sbjct: 272 GKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQ 331

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           T   E  ++ FR+M+    + + ++    L  C+ +A L  G+++H   ++     D+ +
Sbjct: 332 TDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFV 391

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVDLY KCGC++ A  IF  +  R++++WN++ISG++Q+G+GE+AL  F  M   G 
Sbjct: 392 GSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGI 451

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            PD  +FIGVLSACS MGL++ G+K F SM+K Y I P IEHY CMVD+LGRAG   E +
Sbjct: 452 MPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVK 511

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             IE  +    S +WE +LGAC    N    E+ AKK+ E++P    SY+LL N++ + G
Sbjct: 512 IFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKG 571

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           RW+D   IR LM   G+KK PG SW+E + +++
Sbjct: 572 RWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVH 604



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 138/262 (52%), Gaps = 6/262 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +H  +   G   + +V + L+ MY K   V++ ++VF+ M   + VS +ALL G
Sbjct: 168 LRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSG 227

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +  +       RIF +M     + ++F+F  VLR+C+ L     GK+VH   I+ S   D
Sbjct: 228 FYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDD 287

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +ALVD+YAK  C++ A   F ++  R++ +W  +ISG+AQ  + E+A++ F  M  
Sbjct: 288 DFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQR 347

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+  +    LS CSHM  ++ GR+  A   K       I   + +VDL G+ G +E
Sbjct: 348 EGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFG-DIFVGSALVDLYGKCGCME 406

Query: 238 EAETLIENADCRHDSSLWEVLL 259
            AE + +    R D   W  ++
Sbjct: 407 HAEAIFKGLISR-DIVSWNTII 427



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 103/170 (60%), Gaps = 6/170 (3%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAG 95
           + R+F  M +KN VS +ALL GY Q GD + V+++F +M+E +     F+   VL+ CA 
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 96  LAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS 154
             +LR GK +H   +R SGC+ D  +  +LVD+Y+KCG V  A ++F ++   +++ W++
Sbjct: 64  TGSLREGKVLHALALR-SGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSA 122

Query: 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           MI+G  Q G G+EA  +F  M   G +P+  +   ++S  ++MG +  G+
Sbjct: 123 MITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQ 172



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 141/292 (48%), Gaps = 14/292 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK +HA  +  G   +  +  SLVDMY KCG V ++ +VF K+   + V+ SA++ G
Sbjct: 67  LREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITG 126

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVH---CQYIRRSG 114
             Q G  +    +F    R+    + F+   ++     +  LR G+ +H   C+Y   S 
Sbjct: 127 LDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFES- 185

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D ++ + L+ +Y K  CV+  +++F  M   +L++WN+++SGF  +       RIF  
Sbjct: 186 --DNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G KP+  +FI VL +CS +   + G++  A + K             +VD+  +A 
Sbjct: 244 MLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVG-TALVDMYAKAR 302

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            LE+A    +    R D   W V++        A  A +  +++    +KP+
Sbjct: 303 CLEDAGVAFDRLVNR-DIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPN 353



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++HA  +  G  G++ V S+LVD+YGKCG ++ +  +F  ++ ++ VS + ++ G
Sbjct: 370 LENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISG 429

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  +  FR M  E I  D  +F  VL AC+ +  +  GK+      +  G   
Sbjct: 430 YSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINP 489

Query: 118 VIIESA-LVDLYAKCG 132
            I   A +VD+  + G
Sbjct: 490 SIEHYACMVDILGRAG 505



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 44/71 (61%)

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           ++ A ++F  MP +N ++WN++++G+AQ G G++ L++F  M E  TK    +   VL  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 194 CSHMGLIDRGR 204
           C++ G +  G+
Sbjct: 61  CANTGSLREGK 71


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/330 (44%), Positives = 200/330 (60%), Gaps = 6/330 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K GK V   V   GL  N  + ++L+DMY KCG + ++ R+FD M  ++ V+ SA++ GY
Sbjct: 237 KLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGY 296

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-D 117
            Q       + +F EM+    E +  +   VL ACA L AL  GK VH  YIRR      
Sbjct: 297 TQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVH-SYIRRKRLSLT 355

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +I+ +ALVD YAKCGC+D A + F  MPV+N  TW ++I G A NGRG EAL +F  M +
Sbjct: 356 IILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRK 415

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +P  V+FIGVL ACSH  L++ GR+HF SMT++Y IKP+ EHY C+VDLLGRAGL++
Sbjct: 416 ASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLID 475

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I       ++ +W  LL +C   +N  + E   K+I+ L P     Y+LL N+Y 
Sbjct: 476 EAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYA 535

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           +VG+W +A  IR  MK  G++K PG S IE
Sbjct: 536 SVGQWKNAAMIRKEMKDRGIEKTPGCSLIE 565



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 140/268 (52%), Gaps = 8/268 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ + A  +  GL  +  V SSL+ MY  C  V  +  +FD + +   V  +A++  
Sbjct: 135 LDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITA 194

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CK 116
           Y + G++  V+ +F+ M E+    D  +   V+ AC  +   +LGK V  +Y+   G  +
Sbjct: 195 YMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWV-AEYVDEKGLVR 253

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + +AL+D+YAKCG +  A ++F  M  R+++ W++MISG+ Q  +  EAL +F +M 
Sbjct: 254 NRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQ 313

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               +P+ V+ + VLSAC+ +G ++ G K   S  +  R+   I     +VD   + G +
Sbjct: 314 LAEVEPNDVTMVSVLSACAVLGALETG-KWVHSYIRRKRLSLTIILGTALVDFYAKCGCI 372

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTT 264
           ++A    E+   + +S  W  L+    T
Sbjct: 373 DDAVEAFESMPVK-NSWTWTALIKGMAT 399



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 96/213 (45%), Gaps = 7/213 (3%)

Query: 56  SALLQGYCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYI 110
           + L++     G  E  + +F EM ++     D  +    L++C+ +  L +G+ +    +
Sbjct: 87  NVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAV 146

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
           +R    D  + S+L+ +YA C  V  A  +F  +    ++ WN++I+ + +NG   E + 
Sbjct: 147 KRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVE 206

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F  M E G   D ++ + V++AC  +G    G K  A    E  +         ++D+ 
Sbjct: 207 MFKGMLEVGVAFDEITLVSVVTACGRIGDAKLG-KWVAEYVDEKGLVRNRNLMTALIDMY 265

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
            + G L +A  L +    R D   W  ++   T
Sbjct: 266 AKCGELGKARRLFDGMQSR-DVVAWSAMISGYT 297



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 9/178 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH+ +    L   +++ ++LVD Y KCG +D++   F+ M  KNS + +AL++G
Sbjct: 337 LETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKG 396

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F  M +  +     +F  VL AC+    +  G+       +  G K 
Sbjct: 397 MATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKP 456

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGR---GEEALR 170
                  +VDL  + G +D A+Q    MP+  N + W +++S  A +     GEEAL+
Sbjct: 457 RAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALK 514


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 142/337 (42%), Positives = 208/337 (61%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K+G EVH   +  G   +V V SSL+DMY  C   D S +VFD +  ++ +  +++L G
Sbjct: 187 VKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAG 246

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  + IFR M +  +     +F  ++  C  LA+LR GK++H  Y+ R G +D
Sbjct: 247 CAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLH-AYVIRGGFED 305

Query: 118 -VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V I S+L+D+Y KCG +  AH IF +M   ++++W +MI G+A +G   EAL +F+ M 
Sbjct: 306 NVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERME 365

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G  KP+H++F+ VL+ACSH GL+D+G K+F SM+  Y I P +EH   + D+LGRAG L
Sbjct: 366 LGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGEL 425

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA   I     +  +S+W  LL AC   +N  +AE VAKKIMEL+P    S+V+L N+Y
Sbjct: 426 DEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMY 485

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A GRWN+A  +R  M+  G+KK P  SWIE  +KL+
Sbjct: 486 SASGRWNEAAHLRKSMRKKGMKKDPACSWIEVKNKLH 522



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 135/282 (47%), Gaps = 33/282 (11%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMY-------------------GKCGLVDESHRVFD 45
           G  +HA  I  G   +    ++L+++Y                   G    ++   +VFD
Sbjct: 70  GASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFD 129

Query: 46  KMLKKNSVSSSALLQGYCQTGDFESVI----RIFREMEEIDLFSFGIVLRACAGLAALRL 101
           +M++++ VS + L+ G  + G     +    +++RE    D F+   VL   A  A ++ 
Sbjct: 130 EMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKR 189

Query: 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
           G EVH   +R     DV + S+L+D+YA C   D++ ++F  +PVR+ I WNS+++G AQ
Sbjct: 190 GSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQ 249

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
           NG  EEAL IF  M + G +P  V+F  ++  C ++  +  G++  A     Y I+   E
Sbjct: 250 NGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHA-----YVIRGGFE 304

Query: 222 H----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
                 + ++D+  + G +  A  + +   C  D   W  ++
Sbjct: 305 DNVFISSSLIDMYCKCGEISIAHHIFDRM-CSPDVVSWTAMI 345



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 37/236 (15%)

Query: 66  GDFESVIRIFREMEEIDL------FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           G F   I +F  M            S    L++CA L    LG  +H   IR     D  
Sbjct: 28  GHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRF 87

Query: 120 IESALVDLYAKCGC-------------------VDFAHQIFLQMPVRNLITWNSMISGFA 160
             +AL++LY K  C                   ++   ++F +M  R++++WN+++ G A
Sbjct: 88  TANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEMIERDVVSWNTLVLGCA 147

Query: 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI 220
           + GR  EAL +   M   G +PD  +   VL   +    + RG     S    + ++   
Sbjct: 148 EEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRG-----SEVHGFAVRNGF 202

Query: 221 EH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
           ++     + ++D+       + +  + +N   R D  LW  +L  C   +N  V E
Sbjct: 203 DNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DPILWNSVLAGCA--QNGSVEE 255


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 139/338 (41%), Positives = 218/338 (64%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +H +V+  GL  +  V ++LV+MY  CG V ++ +VFD+M++++ V+ +A++ G
Sbjct: 445 LEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGG 504

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           Y      +  +++F  ++E     D  ++  +L ACA   +L   +E+H   +R+ G   
Sbjct: 505 YAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHT-LVRKGGFFS 563

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + +ALV  YAKCG    A  +F +M  RN+I+WN++I G AQ+GRG++AL++F+ M 
Sbjct: 564 DTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMK 623

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KPD V+F+ +LSACSH GL++ GR++F SM++++ I P IEHY CMVDLLGRAG L
Sbjct: 624 MEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQL 683

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EAE LI+    + ++ +W  LLGAC    N  VAER A+  ++L  D  + YV L ++Y
Sbjct: 684 DEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMY 743

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNH 334
            A G W+ A K+R LM+  GV K PG+SWI+   KL++
Sbjct: 744 AAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHY 781



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 172/346 (49%), Gaps = 40/346 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+E+H + +  GL  +V V + +++MY KCG ++E+  VFDKM KK+ VS +  + G
Sbjct: 142 LEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGG 201

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  E+   IF++ME+     +  ++  VL A +  AAL+ GK VH + +      D
Sbjct: 202 YADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESD 261

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +ALV +YAKCG      Q+F ++  R+LI WN+MI G A+ G  EEA  +++ M  
Sbjct: 262 TAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQR 321

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK------------------------- 212
            G  P+ ++++ +L+AC +   +  G++  + + K                         
Sbjct: 322 EGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKD 381

Query: 213 -----EYRIKPKIEHYNCMVDLLGRAGLLEEAETL---IENADCRHDSSLWEVLLGACTT 264
                +  ++  +  +  M+  L ++G   EA T+   ++ A    +   +  +L AC++
Sbjct: 382 ARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSS 441

Query: 265 FRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKI 308
                   R+ ++++E  L  D H+   L+ N+Y   G   DA ++
Sbjct: 442 PAALEWGRRIHQQVVEAGLATDAHVGNTLV-NMYSMCGSVKDARQV 486



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 171/321 (53%), Gaps = 9/321 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK VH++++  G   +  V ++LV MY KCG   +  +VF+K++ ++ ++ + ++ G
Sbjct: 243 LKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 302

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G +E    ++ +M+      +  ++ I+L AC   AAL  GKE+H +  +     D
Sbjct: 303 LAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSD 362

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + +++AL+ +Y++CG +  A  +F +M  +++I+W +MI G A++G G EAL ++ +M +
Sbjct: 363 IGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQ 422

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+ V++  +L+ACS    ++ GR+       E  +       N +V++    G ++
Sbjct: 423 AGVEPNRVTYTSILNACSSPAALEWGRR-IHQQVVEAGLATDAHVGNTLVNMYSMCGSVK 481

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNV 295
           +A  + +    R D   +  ++G          A ++  ++ E  LKPD  ++Y+ + N 
Sbjct: 482 DARQVFDRMIQR-DIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPD-KVTYINMLNA 539

Query: 296 YRAVGRWNDAFKIRTLMKYSG 316
               G    A +I TL++  G
Sbjct: 540 CANSGSLEWAREIHTLVRKGG 560



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 118/209 (56%), Gaps = 6/209 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALL 59
           L  G++VH  +I      +    ++L++MY +CG ++E+ +V+ K+  +++   S +A++
Sbjct: 39  LVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMV 98

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY Q G  E  +++ R+M++     D  +    L +C    AL  G+E+H Q ++    
Sbjct: 99  VGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLL 158

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + + ++++YAKCG ++ A ++F +M  +++++W   I G+A  GR E A  IF  M
Sbjct: 159 FDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKM 218

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
            + G  P+ +++I VL+A S    +  G+
Sbjct: 219 EQEGVVPNRITYISVLNAFSSPAALKWGK 247



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 127/253 (50%), Gaps = 11/253 (4%)

Query: 66  GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV 125
           G  + V  + ++  +++   +  +L+ C  +  L  G++VH   I+     D    +AL+
Sbjct: 6   GAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALI 65

Query: 126 DLYAKCGCVDFAHQIFLQMPV--RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           ++Y +CG ++ A Q++ ++    R + +WN+M+ G+ Q G  E+AL++   M + G  PD
Sbjct: 66  NMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPD 125

Query: 184 HVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
             + +  LS+C   G ++ GR+ HF +M        K+   NC++++  + G +EEA  +
Sbjct: 126 RTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVA--NCILNMYAKCGSIEEAREV 183

Query: 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYR--A 298
            +  + +   S W + +G       +  A  + +K+ +  + P+  ++Y+ + N +   A
Sbjct: 184 FDKMEKKSVVS-WTITIGGYADCGRSETAFEIFQKMEQEGVVPN-RITYISVLNAFSSPA 241

Query: 299 VGRWNDAFKIRTL 311
             +W  A   R L
Sbjct: 242 ALKWGKAVHSRIL 254


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 137/337 (40%), Positives = 217/337 (64%), Gaps = 4/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK +H+    LGL  N+ V ++++DMY KC  ++ +  VF+++ +K+ +S +++L G
Sbjct: 27  LERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSG 86

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             ++G F+  + +FR+M+    E D  +   VL ACA   AL  GK +H    +     D
Sbjct: 87  LAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCD 146

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +++E+ALVD+YAKCG +D A Q+F +M VRN+ TWN+MI G A +G GE+A+ +FD M  
Sbjct: 147 LVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEX 206

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               PD V+FI +L ACSH GL+D G   F +M  +++I+P++EHY C+VDLL RA  ++
Sbjct: 207 DKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVD 266

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A   IEN   + +S LW  LLGAC +  +  +AE++ ++++EL+PD    YV+L N+Y 
Sbjct: 267 DALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYA 326

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNH 334
            V +W+ A K+R  MK  G++K PG SWIE N  ++ 
Sbjct: 327 GVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQ 363


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 141/336 (41%), Positives = 208/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GKE+H   I  G   +V + SSL+DMY KC  VD+S RVF  + + + +S ++++ G
Sbjct: 252 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAG 311

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G F+  ++ F++M     + +  SF  ++ ACA L  L LGK++H   IR     +
Sbjct: 312 CVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGN 371

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I SALVD+YAKCG +  A  IF +M + ++++W +MI G+A +G   +A+ +F  M  
Sbjct: 372 VFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEV 431

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP++V+F+ VL+ACSH GL+D   K+F SMT++YRI P +EHY  + DLLGR G LE
Sbjct: 432 EGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLE 491

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I +       S+W  LL AC   +N  +AE+V+KK+  + P    +YVLL N+Y 
Sbjct: 492 EAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYS 551

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GRW DA K+R  M+  G+KK P  SWIE  +K++
Sbjct: 552 AAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVH 587



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 35/310 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESH-------------------- 41
           L+ G+ VH  +I LG+  ++   ++L++MY K   ++E +                    
Sbjct: 122 LRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEK 181

Query: 42  ---------RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGI 88
                    +VF+ M K++ VS + ++ G  Q G  E  + + REM   DL    F+   
Sbjct: 182 ESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSS 241

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           VL   A    L  GKE+H   IR     DV I S+L+D+YAKC  VD + ++F  +P  +
Sbjct: 242 VLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHD 301

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
            I+WNS+I+G  QNG  +E L+ F  M     KP+HVSF  ++ AC+H+  +  G++   
Sbjct: 302 GISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHG 361

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            + +  R    +   + +VD+  + G +  A  + +  +  +D   W  ++       +A
Sbjct: 362 YIIRS-RFDGNVFIASALVDMYAKCGNIRTARWIFDKMEL-YDMVSWTAMIMGYALHGHA 419

Query: 269 HVAERVAKKI 278
           + A  + K++
Sbjct: 420 YDAISLFKRM 429



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 35/222 (15%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQGY 62
           Q K++HA+++   L    ++ S+++ +Y    L+ +S  +F+ +     +++  ++++ Y
Sbjct: 23  QAKQLHAQILRTSLPSPSLL-STILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCY 81

Query: 63  CQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G F   +  F +M    +  D   F  VL++C  +  LR G+ VH   IR     D+
Sbjct: 82  TSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDL 141

Query: 119 IIESALVDLYAKCGCVDFAH-----------------------------QIFLQMPVRNL 149
              +AL+++Y+K   ++  +                             ++F  MP R++
Sbjct: 142 YTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDI 201

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           ++WN++ISG AQNG  E+AL +  +M     +PD  +   VL
Sbjct: 202 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 243



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 7/143 (4%)

Query: 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFA 160
            K++H Q +R S     ++ S ++ +Y+    +  +  IF  +P     + W S+I  + 
Sbjct: 24  AKQLHAQILRTSLPSPSLL-STILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYT 82

Query: 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI 220
            +G    +L  F  M   G  PDH  F  VL +C+ M  +  G      +    R+    
Sbjct: 83  SHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCII---RLGMGF 139

Query: 221 EHYNC--MVDLLGRAGLLEEAET 241
           + Y C  ++++  +   LEE  T
Sbjct: 140 DLYTCNALMNMYSKFWSLEEVNT 162


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 150/374 (40%), Positives = 224/374 (59%), Gaps = 43/374 (11%)

Query: 2   LKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFD--------------- 45
           LK+G ++HA+V+ T     ++V+ ++LVDMY KC  V+E+ RVFD               
Sbjct: 264 LKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVS 323

Query: 46  ----------------KMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FS 85
                           KM ++N VS +AL+ GY Q G+ E  +R+FR ++   +    ++
Sbjct: 324 GYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYT 383

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRR-----SGCK-DVIIESALVDLYAKCGCVDFAHQ 139
           FG +L ACA LA L LG++ H   +++     SG + D+ + ++L+D+Y KCG ++   +
Sbjct: 384 FGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSR 443

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +M  R+ ++WN++I G+AQNG G EAL+IF  M   G KPDHV+ IGVL ACSH GL
Sbjct: 444 VFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGL 503

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           ++ GR +F SM +E+ + P  +HY CMVDLLGRAG L EA+ LIE      D+ +W  LL
Sbjct: 504 VEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLL 562

Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
            AC    N  + +  A+K++E+ P     YVLL N+Y  +GRW D  ++R LM+  GV K
Sbjct: 563 AACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTK 622

Query: 320 MPGKSWIEANSKLN 333
            PG SWIE  S+++
Sbjct: 623 QPGCSWIEVESRVH 636



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 141/278 (50%), Gaps = 35/278 (12%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VHA+++       + +++ L+D+YGKC  +D++ ++FD+M ++N+ + ++L+    ++G 
Sbjct: 37  VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96

Query: 68  FESVIRIFREMEEIDL-----------------------------------FSFGIVLRA 92
            +   R+F  M E D                                    +SFG  L A
Sbjct: 97  LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
           CAGL  L +G +VH    +     DV + SAL+D+Y+KCG V  A ++F  M  RNL+TW
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTW 216

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           NS+I+ + QNG   EAL +F  M + G +PD V+   V+SAC+ +  +  G +  A + K
Sbjct: 217 NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK 276

Query: 213 EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
             + +  +   N +VD+  +   + EA  + +    R+
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRN 314



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 151/299 (50%), Gaps = 42/299 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G +VHA V       +V + S+L+DMY KCG V  +  VF  M+++N V+ ++L+  
Sbjct: 163 LNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITC 222

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y Q G     + +F  M     E D  +   V+ ACA L AL+ G ++H + ++ +  + 
Sbjct: 223 YEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRD 282

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPV------------------------------ 146
           D+++ +ALVD+YAKC  V+ A ++F +M +                              
Sbjct: 283 DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMT 342

Query: 147 -RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN+++WN++I+G+ QNG  EEALR+F  +      P H +F  +LSAC+++  +  GR+
Sbjct: 343 QRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQ 402

Query: 206 HFASMTK---EYRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
               + K   E++   + + +  N ++D+  + G +E+   + E    R D   W  ++
Sbjct: 403 AHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKER-DCVSWNAII 460



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 4/128 (3%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           F  +L +C    + R  + VH + +      ++ I++ L+D+Y KC C+D A ++F +MP
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMP 77

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN  TWNS+IS   ++G  +EA R+F  M E    PD  S+  ++S  +     +   +
Sbjct: 78  QRNTFTWNSLISVLTKSGFLDEAARLFGSMPE----PDQCSWNSMVSGFAQHDRFEESLE 133

Query: 206 HFASMTKE 213
           +F  M +E
Sbjct: 134 YFVKMHRE 141


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/331 (40%), Positives = 211/331 (63%), Gaps = 6/331 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G +VHA+++  GL  +V V S LVDM+GKCG V  + +VFD +  +N V  ++L+  
Sbjct: 243 LGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTA 302

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G+FE  + +     RE    + F+F ++L A AG+AALR G  +H + + + G K+
Sbjct: 303 YLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHAR-VEKLGIKN 361

Query: 118 -VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            VI+ +AL+++Y+KCGC+D ++ +F  M  R++ITWN+MI G++Q+G G++AL +F DM 
Sbjct: 362 RVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDML 421

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+HV+F+GVLSAC+H+ L++ G  +   + K ++++P +EHY C+V +L RAG+L
Sbjct: 422 SAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGML 481

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEAE  +     + D   W VLL AC   RN ++  ++A+ I+++ P    +Y LL N+Y
Sbjct: 482 EEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMY 541

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
                W+    IR +M+   VKK PG SWIE
Sbjct: 542 AKARSWDSVTMIRKMMRERNVKKEPGVSWIE 572



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 121/248 (48%), Gaps = 10/248 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-----KKNSVSS 55
           R+ +G + H  +   GL  +  V+SSLV MY KC  VD + +V +          ++   
Sbjct: 136 RVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCY 195

Query: 56  SALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           +++L    ++G     + +   M +     D  ++  V+  C  +  L LG +VH Q ++
Sbjct: 196 NSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLK 255

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                DV + S LVD++ KCG V  A ++F  +  RN++ W S+++ + QNG  EE L +
Sbjct: 256 GGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNL 315

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
              M   GT  +  +F  +L+A + M  +  G    A + K   IK ++   N ++++  
Sbjct: 316 LSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEK-LGIKNRVIVGNALINMYS 374

Query: 232 RAGLLEEA 239
           + G ++ +
Sbjct: 375 KCGCIDSS 382



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 133/278 (47%), Gaps = 21/278 (7%)

Query: 2   LKQGKEVHAKVITLGLCG--------NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSV 53
           L  GK +H +++              N++  +SL+++Y KC  +  +  +FD+M  ++ V
Sbjct: 28  LNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVV 87

Query: 54  SSSALLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQY 109
           S + L+ GY  +G+   V+++F+ M     + + + F  VL ACA    +  G + H   
Sbjct: 88  SYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFL 147

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL------ITWNSMISGFAQNG 163
            +        ++S+LV +Y+KC  VD A Q+ L+    N+        +NS+++   ++G
Sbjct: 148 FKFGLVFHHFVKSSLVHMYSKCFHVDLALQV-LESEHGNIDNDNDAFCYNSVLNALVESG 206

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
           R  EA+ +   M + G   D V+++ V+  C  +  +  G +  A + K   +   +   
Sbjct: 207 RLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKG-GLTFDVFVG 265

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           + +VD+ G+ G +  A  + +    R +  +W  L+ A
Sbjct: 266 SMLVDMFGKCGDVLSARKVFDGLQNR-NVVVWTSLMTA 302



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 8/120 (6%)

Query: 94  AGLAALRLGKEVHCQYIRRSGCK--------DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           A    L  GK +H Q + R+           ++I  ++L++LY KC  +  A  +F +M 
Sbjct: 23  ANTKNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMS 82

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +R+++++N ++ G+  +G   E +++F +M     +P+   F  VLSAC+H G +  G +
Sbjct: 83  LRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQ 142


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 141/336 (41%), Positives = 208/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GKE+H   I  G   +V + SSL+DMY KC  VD+S RVF  + + + +S ++++ G
Sbjct: 212 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAG 271

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G F+  ++ F++M     + +  SF  ++ ACA L  L LGK++H   IR     +
Sbjct: 272 CVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGN 331

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I SALVD+YAKCG +  A  IF +M + ++++W +MI G+A +G   +A+ +F  M  
Sbjct: 332 VFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEV 391

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP++V+F+ VL+ACSH GL+D   K+F SMT++YRI P +EHY  + DLLGR G LE
Sbjct: 392 EGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLE 451

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I +       S+W  LL AC   +N  +AE+V+KK+  + P    +YVLL N+Y 
Sbjct: 452 EAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYS 511

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GRW DA K+R  M+  G+KK P  SWIE  +K++
Sbjct: 512 AAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVH 547



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 6/241 (2%)

Query: 42  RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLA 97
           +VF+ M K++ VS + ++ G  Q G  E  + + REM   DL    F+   VL   A   
Sbjct: 151 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYV 210

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
            L  GKE+H   IR     DV I S+L+D+YAKC  VD + ++F  +P  + I+WNS+I+
Sbjct: 211 NLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIA 270

Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
           G  QNG  +E L+ F  M     KP+HVSF  ++ AC+H+  +  G++    + +  R  
Sbjct: 271 GCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRS-RFD 329

Query: 218 PKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKK 277
             +   + +VD+  + G +  A  + +  +  +D   W  ++       +A+ A  + K+
Sbjct: 330 GNVFIASALVDMYAKCGNIRTARWIFDKMEL-YDMVSWTAMIMGYALHGHAYDAISLFKR 388

Query: 278 I 278
           +
Sbjct: 389 M 389


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 137/335 (40%), Positives = 218/335 (65%), Gaps = 7/335 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  V + +   GL  N+ + ++L+DMY KCG +D++  +F+ + +K+ +S + ++ G
Sbjct: 280 LELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGG 339

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRS--GC 115
           Y     ++  + +FR+M++ ++     +F  +L ACA L AL LGK +H  YI +   G 
Sbjct: 340 YSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHA-YIDKKFLGL 398

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +  + ++L+D+YAKCG ++ A Q+F  M  ++L +WN+MISG A +G    AL +F  M
Sbjct: 399 TNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQM 458

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G +PD ++F+GVLSACSH GL++ GR+ F+SM ++Y I PK++HY CM+DLLGRAGL
Sbjct: 459 RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGL 518

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            +EAE L++N + + D ++W  LLGAC    N  + E  AK + EL+P+   +YVLL N+
Sbjct: 519 FDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNI 578

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           Y   GRW+D  +IRT +   G+KK+PG S IE +S
Sbjct: 579 YATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDS 613



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 165/320 (51%), Gaps = 40/320 (12%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKC---------------------------- 34
           ++GK++H  V+ LGL  +  V +SL++MY +                             
Sbjct: 149 QEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGY 208

Query: 35  ---GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF----SFG 87
              G +D++ R+F+++  +++VS +A++ GY Q+G FE  +  F+EM+  ++     +  
Sbjct: 209 TLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMV 268

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            VL ACA   +L LG  V   +I   G   ++ + +AL+D+Y+KCG +D A  +F  +  
Sbjct: 269 TVLSACAQSGSLELGNWVR-SWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICE 327

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +++I+WN MI G++     +EAL +F  M +   +P+ V+F+ +L AC+++G +D G+  
Sbjct: 328 KDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWI 387

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
            A + K++        +  ++D+  + G +E A+ +      +   S W  ++       
Sbjct: 388 HAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-WNAMISGLAMHG 446

Query: 267 NAHVAERVAKKIME--LKPD 284
           +A++A  + +++ +   +PD
Sbjct: 447 HANMALELFRQMRDEGFEPD 466



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 154/319 (48%), Gaps = 53/319 (16%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDM-----YGKCG---LVDES-----HRVFDKMLKKNS 52
           K++H+++I  GL       S L++      +G      L+ ES       +++ M++ NS
Sbjct: 49  KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNS 108

Query: 53  VSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           +SSS +       G  +  +R+     E + ++F  +L++CA + A + GK++H   ++ 
Sbjct: 109 LSSSPV-------GAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKL 161

Query: 113 SGCKDVIIESALVDLYAKCG-------------------------------CVDFAHQIF 141
               D  + ++L+++YA+ G                               C+D A ++F
Sbjct: 162 GLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLF 221

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
            ++PVR+ ++WN+MI+G+AQ+GR EEAL  F +M      P+  + + VLSAC+  G ++
Sbjct: 222 EEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLE 281

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            G     S  +++ +   +   N ++D+  + G L++A  L E   C  D   W V++G 
Sbjct: 282 LG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI-CEKDIISWNVMIGG 339

Query: 262 CTTFRNAHVAERVAKKIME 280
            +   +   A  + +K+ +
Sbjct: 340 YSHMNSYKEALALFRKMQQ 358


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 136/334 (40%), Positives = 215/334 (64%), Gaps = 5/334 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SALLQGYC 63
           GK+ H  ++ LG    V V+S+LVDMY KCG   ++   F ++   + V   +A++ G+ 
Sbjct: 345 GKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHV 404

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G+ E  + ++  M++        +   VLRACA LAAL  GK++H Q ++        
Sbjct: 405 QNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGS 464

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL  +Y+KCG ++ +  +F +MP R++I+WNS+ISGF+Q+GRG +AL +F++M   G
Sbjct: 465 VGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEG 524

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PDH++FI VL ACSHMGL+DRG  +F +M+K+Y + PK++HY C+VD+L RAG L+EA
Sbjct: 525 IAPDHITFINVLCACSHMGLVDRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAGQLKEA 584

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
           +  IE+    H + LW ++LGAC + R+  V     +++MEL  +   +Y+LL N+Y A 
Sbjct: 585 KDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQ 644

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            +WND  ++R LM+  GV K PG SW+E N+++N
Sbjct: 645 RKWNDVERVRHLMRLRGVSKDPGCSWVELNNQVN 678



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 121/213 (56%), Gaps = 5/213 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H  V+  GL G V VE+SLV MY K   +D +  VF    ++NS++ SA++ GY Q
Sbjct: 244 GVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQ 303

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G+ +    +F +M         F+F  +L A + + AL +GK+ H   ++    + V +
Sbjct: 304 NGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYV 363

Query: 121 ESALVDLYAKCGCVDFAHQIFLQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +SALVD+YAKCGC   A   F Q+  V +++ W +MI+G  QNG  EEAL ++  M + G
Sbjct: 364 KSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEG 423

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
             P +++   VL AC+ +  ++ G++  A + K
Sbjct: 424 VMPSYLTVTSVLRACACLAALEPGKQLHAQILK 456



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 128/245 (52%), Gaps = 6/245 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           NV V ++L++MY K G + ++ RVFD+M  +N+VS +A++ GY      E    +FR M 
Sbjct: 157 NVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLML 216

Query: 79  EEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
           +E  L    F    VL A +    L +G ++H   ++      V +E++LV +YAK  C+
Sbjct: 217 QECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECM 276

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           D A  +F     RN ITW++MI+G+AQNG  + A  +F  M   G  P   +F+G+L+A 
Sbjct: 277 DAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNAS 336

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           S MG +  G++    M K    + ++   + +VD+  + G   +A+          D  +
Sbjct: 337 SDMGALVVGKQAHGLMVK-LGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVI 395

Query: 255 WEVLL 259
           W  ++
Sbjct: 396 WTAMI 400



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 14/212 (6%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMY--GKCGLVDESHRVFDKMLK--KNSVSSSAL 58
           + G  +H   +  G   +  V +SL+  Y      L+  +  VF  +    ++  S ++L
Sbjct: 31  RAGDALHGWALKSGAASHTPVSNSLITFYCSPPRPLLGAAFAVFADIPAGLRDVASWNSL 90

Query: 59  LQGYCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVH---CQYI 110
           L    +     ++      M   D       SF  V  A A + +   G   H   C+  
Sbjct: 91  LNPLSRHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLP 150

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
             SG  +V + +AL+++Y K G +  A ++F QMP RN ++W +M+SG+A     EEA  
Sbjct: 151 SSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFE 210

Query: 171 IFDDM-TEGGTKPDHVSFIGVLSACS-HMGLI 200
           +F  M  E   + +      VLSA S  +GL+
Sbjct: 211 LFRLMLQECPLEKNEFVATAVLSAVSVPLGLL 242



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 4/97 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++HA+++  G      V ++L  MY KCG +++S  VF +M  ++ +S ++++ G
Sbjct: 444 LEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISG 503

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACA 94
           + Q G     + +F EM+      D  +F  VL AC+
Sbjct: 504 FSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACS 540


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 141/336 (41%), Positives = 213/336 (63%), Gaps = 6/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +GKE+H   I  GL  ++ V SSL+DMY KC  V +S RVF  + +++ +S ++++ G
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAG 314

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
             Q G F+  +R FR+M    +    +SF  ++ ACA L  L LGK++H  YI R+G  +
Sbjct: 315 CVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH-GYITRNGFDE 373

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ I S+LVD+YAKCG +  A QIF +M +R++++W +MI G A +G+  +A+ +F+ M 
Sbjct: 374 NIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQME 433

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+HV+F+ VL+ACSH GL+D   K+F SMT+++ I P +EHY  + DLLGRAG L
Sbjct: 434 TEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRL 493

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA   I         S+W  LL AC    N  +AE+VA +I+E+ P+   +Y+LL N+Y
Sbjct: 494 EEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIY 553

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            A  RW +A K R  M+  G++K P  SWIE  +K+
Sbjct: 554 SAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKV 589



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 38/297 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHR------------------- 42
           L  G+ +H  +I +GL  ++   ++L++MY K   ++ES R                   
Sbjct: 122 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSV 181

Query: 43  -------------VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFS 85
                        +F+ M +K+ VS + ++ G  + G +E  +R+ REM     + D F+
Sbjct: 182 RTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFT 241

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              VL   A    +  GKE+H   IR+    D+ + S+L+D+YAKC  V  + ++F  + 
Sbjct: 242 LSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLT 301

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R+ I+WNS+I+G  QNG  +E LR F  M     KP   SF  ++ AC+H+  +  G++
Sbjct: 302 ERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ 361

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
               +T+       I   + +VD+  + G +  A+ + +    R D   W  ++  C
Sbjct: 362 LHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGC 416



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 37/238 (15%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           Q +++HA+V+      ++   S L+ +Y    L+ +S R+F+ +    +++  ++++ Y 
Sbjct: 24  QAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYT 82

Query: 64  QTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             G     +  F  M    L+     F  VL++CA L  L LG+ +H   IR     D+ 
Sbjct: 83  SHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLY 142

Query: 120 IESALVDLYAKCGCV--------------------------------DFAHQIFLQMPVR 147
             +AL+++Y+K   +                                D   +IF  MP +
Sbjct: 143 TGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEK 202

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +L++WN++I+G A+NG  EE LR+  +M     KPD  +   VL   +    I RG++
Sbjct: 203 DLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKE 260


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  278 bits (710), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 135/337 (40%), Positives = 218/337 (64%), Gaps = 4/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK +H+    LGL  N+ V ++++DMY KC  ++ +  VF+++ +K+ +S +++L G
Sbjct: 229 LERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSG 288

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             ++G F+  + +F++M+    E+D  +   VL ACA   AL  GK +H    +     D
Sbjct: 289 LAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCD 348

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +++E+ALVD+YAKCG +D A Q+F +M VRN+ TWN++I G A +G GE+A+ +FD M  
Sbjct: 349 LVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEH 408

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               PD V+FI +L ACSH GL+D G   F +M  +++I+P++EHY C+VDLL RA  ++
Sbjct: 409 DKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVD 468

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A   IEN   + +S LW  LLGAC +  +  +AE++ ++++EL+PD    YV+L N+Y 
Sbjct: 469 DALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYA 528

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNH 334
            V +W+ A K+R  MK  G++K PG SWIE N  ++ 
Sbjct: 529 GVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQ 565



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 130/249 (52%), Gaps = 8/249 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYG--KCGLVDESHRVFDKMLKKNSVSSSALL 59
           + + K+ HA ++   L  N +  S L+        G ++ + ++F +M   +    + ++
Sbjct: 24  ISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMI 83

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           +GY ++ +    + ++  M E    +D +++  VL ACA L A++LG+  HC+ ++    
Sbjct: 84  RGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFG 143

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D+ + +AL+  Y  CG    A  +F +  VR+++TWN MI+     G  E+A  + D+M
Sbjct: 144 SDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEM 203

Query: 176 TE-GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           T+    +PD V+ + ++ AC+ +G ++RG K   S +KE  +   +   N ++D+  +  
Sbjct: 204 TKLDNLRPDEVTMVSLVPACAQLGNLERG-KFLHSYSKELGLDENLRVNNAILDMYCKCD 262

Query: 235 LLEEAETLI 243
            +E A+ + 
Sbjct: 263 DIESAQEVF 271


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 210/336 (62%), Gaps = 4/336 (1%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            LKQGK++ A  I LG   ++ V S ++DMY KCG +  +  +F ++ + + V+ + ++ G
Sbjct: 1115 LKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISG 1174

Query: 62   YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            Y + GD +  + ++  M     + D ++F  +++A + L AL  GK++H   ++     D
Sbjct: 1175 YIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLD 1234

Query: 118  VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
              + ++LVD+Y KCG V  A+++F +M VR ++ WN+M+ G AQ+G  +EAL +F  M  
Sbjct: 1235 HFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQS 1294

Query: 178  GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             G +PD V+FIGVLSACSH GL     K+F +M K Y I P+IEHY+C+VD LGRAG ++
Sbjct: 1295 NGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQ 1354

Query: 238  EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            EAE +I +   +  +S++  LLGAC T  +A  A+RVA K++ L P    +YVLL N+Y 
Sbjct: 1355 EAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYA 1414

Query: 298  AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A  +W+D    R +MK   VKK PG SWI+  +K++
Sbjct: 1415 ASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVH 1450



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 131/261 (50%), Gaps = 10/261 (3%)

Query: 5    GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            G +VH   I  G+  +  V ++L+D+Y K G +DE+  +       +  S +A++ GY +
Sbjct: 1017 GSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIK 1076

Query: 65   TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            +      +  F  M E    ID  +    ++A   L  L+ GK++    I+     D+ +
Sbjct: 1077 SNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWV 1136

Query: 121  ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
             S ++D+Y KCG +  A ++F ++   + + W +MISG+ +NG  + AL ++  M   G 
Sbjct: 1137 SSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGV 1196

Query: 181  KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEE 238
            +PD  +F  ++ A S +  +++G++  A++ K   +   ++H+    +VD+  + G +++
Sbjct: 1197 QPDEYTFATLIKASSCLTALEQGKQIHANVVK---LDYSLDHFVGTSLVDMYCKCGSVQD 1253

Query: 239  AETLIENADCRHDSSLWEVLL 259
            A  +    D R     W  +L
Sbjct: 1254 AYRVFRKMDVRK-VVFWNAML 1273



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 11/225 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK  HA+++T G   +  + ++L+ MY KCG +  + +VFDK   ++ V+ +++L  
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 62  YCQTGD--FESVIRIFREMEEIDLFSFGIVLRACAGLAA-------LRLGKEVHCQYIRR 112
           Y Q  D  +E+V+  FR    +  F F I     A L         +++ + VH   ++ 
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               D+ +  ALV++Y K G V  A  +F +MP R+ + WN M+  + +N   +EALR F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
                 G  PD  +   V+   +    +   RK  A   K Y +K
Sbjct: 807 SAFHRSGFXPDFSNLHCVIGGVN--SDVSNNRKRHAEQVKAYAMK 849



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 8/167 (4%)

Query: 82   DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
            D  +  I+L A  G   L LG+++H   I+ S    V + ++L+++Y+K G V  A + F
Sbjct: 893  DSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF 952

Query: 142  LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
            +  P  +LI+WN+MIS +AQN    EA+  F D+   G KPD  +   VL ACS     D
Sbjct: 953  INSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---D 1009

Query: 202  RGRKH-FASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLI 243
             G      S    Y IK  I +       ++DL  + G ++EAE L+
Sbjct: 1010 EGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLL 1056



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L  G+++HA VI       V V +SL++MY K G+V  + + F    + + +S + ++  
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 62   YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAG---LAALRLGKEVHCQYIRRSG 114
            Y Q       I  FR++     + D F+   VLRAC+         LG +VH   I+   
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI 1029

Query: 115  CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
              D  + +AL+DLY+K G +D A  +       +L +WN+++ G+ ++ +  +AL  F  
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSL 1089

Query: 175  MTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            M E G   D ++    + A   +  + +G++
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQ 1120



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 15/180 (8%)

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
           R+   +A L+LGK  H + +      D  + + L+ +Y+KCG +  A Q+F +   R+L+
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 151 TWNSMISGFAQNGRGE-----EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           TWNS+++ +AQ          E  R+F  + E G     ++   +L  C   G +     
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV----- 733

Query: 206 HFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
             +     Y +K   E        +V++  + GL+ +A  L +    R D+ LW V+L A
Sbjct: 734 QVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVMLKA 792


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 210/336 (62%), Gaps = 4/336 (1%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            LKQGK++ A  I LG   ++ V S ++DMY KCG +  +  +F ++ + + V+ + ++ G
Sbjct: 1115 LKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISG 1174

Query: 62   YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            Y + GD +  + ++  M     + D ++F  +++A + L AL  GK++H   ++     D
Sbjct: 1175 YIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLD 1234

Query: 118  VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
              + ++LVD+Y KCG V  A+++F +M VR ++ WN+M+ G AQ+G  +EAL +F  M  
Sbjct: 1235 HFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQS 1294

Query: 178  GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             G +PD V+FIGVLSACSH GL     K+F +M K Y I P+IEHY+C+VD LGRAG ++
Sbjct: 1295 NGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQ 1354

Query: 238  EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            EAE +I +   +  +S++  LLGAC T  +A  A+RVA K++ L P    +YVLL N+Y 
Sbjct: 1355 EAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYA 1414

Query: 298  AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A  +W+D    R +MK   VKK PG SWI+  +K++
Sbjct: 1415 ASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVH 1450



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 131/261 (50%), Gaps = 10/261 (3%)

Query: 5    GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            G +VH   I  G+  +  V ++L+D+Y K G +DE+  +       +  S +A++ GY +
Sbjct: 1017 GSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIK 1076

Query: 65   TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            +      +  F  M E    ID  +    ++A   L  L+ GK++    I+     D+ +
Sbjct: 1077 SNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWV 1136

Query: 121  ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
             S ++D+Y KCG +  A ++F ++   + + W +MISG+ +NG  + AL ++  M   G 
Sbjct: 1137 SSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGV 1196

Query: 181  KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEE 238
            +PD  +F  ++ A S +  +++G++  A++ K   +   ++H+    +VD+  + G +++
Sbjct: 1197 QPDEYTFATLIKASSCLTALEQGKQIHANVVK---LDYSLDHFVGTSLVDMYCKCGSVQD 1253

Query: 239  AETLIENADCRHDSSLWEVLL 259
            A  +    D R     W  +L
Sbjct: 1254 AYRVFRKMDVRK-VVFWNAML 1273



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 11/225 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK  HA+++T G   +  + ++L+ MY KCG +  + +VFDK   ++ V+ +++L  
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 62  YCQTGD--FESVIRIFREMEEIDLFSFGIVLRACAGLAA-------LRLGKEVHCQYIRR 112
           Y Q  D  +E+V+  FR    +  F F I     A L         +++ + VH   ++ 
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               D+ +  ALV++Y K G V  A  +F +MP R+ + WN M+  + +N   +EALR F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
                 G  PD  +   V+   +    +   RK  A   K Y +K
Sbjct: 807 SAFHRSGFFPDFSNLHCVIGGVN--SDVSNNRKRHAEQVKAYAMK 849



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 8/167 (4%)

Query: 82   DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
            D  +  I+L A  G   L LG+++H   I+ S    V + ++L+++Y+K G V  A + F
Sbjct: 893  DSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF 952

Query: 142  LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
            +  P  +LI+WN+MIS +AQN    EA+  F D+   G KPD  +   VL ACS     D
Sbjct: 953  INSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---D 1009

Query: 202  RGRKH-FASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLI 243
             G      S    Y IK  I +       ++DL  + G ++EAE L+
Sbjct: 1010 EGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLL 1056



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L  G+++HA VI       V V +SL++MY K G+V  + + F    + + +S + ++  
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 62   YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAG---LAALRLGKEVHCQYIRRSG 114
            Y Q       I  FR++     + D F+   VLRAC+         LG +VH   I+   
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI 1029

Query: 115  CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
              D  + +AL+DLY+K G +D A  +       +L +WN+++ G+ ++ +  +AL  F  
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSL 1089

Query: 175  MTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            M E G   D ++    + A   +  + +G++
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQ 1120



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 15/180 (8%)

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
           R+   +A L+LGK  H + +      D  + + L+ +Y+KCG +  A Q+F +   R+L+
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 151 TWNSMISGFAQNGRGE-----EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           TWNS+++ +AQ          E  R+F  + E G     ++   +L  C   G +     
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV----- 733

Query: 206 HFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
             +     Y +K   E        +V++  + GL+ +A  L +    R D+ LW V+L A
Sbjct: 734 QVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVMLKA 792


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  277 bits (708), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 138/336 (41%), Positives = 209/336 (62%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH  ++  GL  ++ V ++LV M+  CG +  +  +F+ M K++ VS + ++ G
Sbjct: 530 LELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAG 589

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +     F+ M+E     D  +F  +L ACA   AL  G+ +H      +   D
Sbjct: 590 FVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCD 649

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V++ + L+ +Y KCG ++ AHQ+F ++P +N+ +W SMI+G+AQ+GRG+EAL +F  M +
Sbjct: 650 VLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQ 709

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F+G LSAC+H GLI+ G  HF SM KE+ I+P++EHY CMVDL GRAGLL 
Sbjct: 710 EGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLN 768

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I       DS +W  LLGAC    N  +AE+ A+K +EL P+ +  +V+L N+Y 
Sbjct: 769 EAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYA 828

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G W +  K+R +M   GV K PG+SWIE + K++
Sbjct: 829 AAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVH 864



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 151/288 (52%), Gaps = 6/288 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+G+++   +I  G   +  V ++L+ MY KCG + ++HRVF+K+ K+N V+ +A++  
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITA 488

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q   +++ +  F    +E  + +  +F  +L  C    +L LGK VH   ++     D
Sbjct: 489 YVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESD 548

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV ++  CG +  A  +F  MP R+L++WN++I+GF Q+G+ + A   F  M E
Sbjct: 549 LHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE 608

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F G+L+AC+    +  GR+  A +T E      +     ++ +  + G +E
Sbjct: 609 SGIKPDKITFTGLLNACASPEALTEGRRLHALIT-EAAFDCDVLVGTGLISMYTKCGSIE 667

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPD 284
           +A  +      ++  S   ++ G     R     E   +   E +KPD
Sbjct: 668 DAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPD 715



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 139/242 (57%), Gaps = 5/242 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ ++  +   G+  ++ + ++L++MY KCG    + ++FD M +K+  S + LL G
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G +E   ++  +M +     D  +F  +L ACA    +  G+E++   ++     D
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL++++ KCG +  A ++F  +P R+L+TW SMI+G A++GR ++A  +F  M E
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD V+F+ +L AC+H   +++G+K  A M KE     +I     ++ +  + G +E
Sbjct: 306 EGVQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSMYTKCGSME 364

Query: 238 EA 239
           +A
Sbjct: 365 DA 366



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 127/208 (61%), Gaps = 4/208 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +G+E++  ++  G   ++ V ++L++M+ KCG + ++ +VFD +  ++ V+ ++++ G
Sbjct: 227 VDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITG 286

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G F+    +F+ MEE     D  +F  +LRAC    AL  GK+VH +        +
Sbjct: 287 LARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTE 346

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +A++ +Y KCG ++ A ++F  +  RN+++W +MI+GFAQ+GR +EA   F+ M E
Sbjct: 347 IYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G +P+ V+F+ +L ACS    + RG++
Sbjct: 407 SGIEPNRVTFMSILGACSSPSALKRGQQ 434



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 151/290 (52%), Gaps = 10/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK+VHA++  +G    + V ++++ MY KCG ++++  VFD +  +N VS +A++ G
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +     F +M E  +     +F  +L AC+  +AL+ G+++    I      D
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ +YAKCG +  AH++F ++  +N++ WN+MI+ + Q+ + + AL  F  + +
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLK 507

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G KP+  +F  +L+ C     ++ G+  HF  M  +  ++  +   N +V +    G L
Sbjct: 508 EGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM--KAGLESDLHVSNALVSMFVNCGDL 565

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
             A+ L  +   R D   W  ++          VA    K + E  +KPD
Sbjct: 566 MSAKNLFNDMPKR-DLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPD 614



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 97/168 (57%), Gaps = 6/168 (3%)

Query: 50  KNSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLF--SFGIVLRACAGLAALRLGKEV 105
           K++  ++A+L    + G F   +++   ++   I ++  ++  +L+ C     L  G+ +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 106 HCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
           +  +I++SG + D+ + + L+++YAKCG    A QIF  M  +++ +WN ++ G+ Q+G 
Sbjct: 133 Y-NHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            EEA ++ + M +   KPD  +F+ +L+AC+    +D+GR+ +  + K
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK 239


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  277 bits (708), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 208/330 (63%), Gaps = 4/330 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +H ++I   L  +  V  +L+DMY KCG+++++ ++ D++ ++  VS +A++ G+     
Sbjct: 452 IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQ 511

Query: 68  FESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            E   + F +M E+    D F++  +L  CA L  + LGK++H Q I++    D  I S 
Sbjct: 512 SEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISST 571

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           LVD+Y+KCG +     IF + P R+ +TWN+M+ G+AQ+G GEEAL+IF+ M     KP+
Sbjct: 572 LVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPN 631

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
           H +F+ VL AC HMGL+++G  +F SM   Y + P++EHY+C+VD++GR+G + +A  LI
Sbjct: 632 HATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELI 691

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
           E      D+ +W  LL  C    N  VAE+ A  I++L+P+   +YVLL N+Y   G WN
Sbjct: 692 EGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWN 751

Query: 304 DAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +  K+R +M+++G+KK PG SWIE  S+++
Sbjct: 752 EVTKLRKMMRFNGLKKEPGCSWIEIKSEVH 781



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 137/262 (52%), Gaps = 22/262 (8%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H   + +G   +VV  S+L+DMY KC  +D S + F  M +KN VS SA++ G  Q
Sbjct: 193 GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQ 252

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             D    + +F+EM++    +   +F  V R+CAGL+ALRLG ++H   ++     DV+I
Sbjct: 253 NDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVI 312

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A +D+Y KC  +  A ++F  +P  NL ++N++I G+A++ +              G 
Sbjct: 313 GTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDK--------------GL 358

Query: 181 KPDHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             D VS  G   AC+ + G ++  + H  SM      +  I   N ++D+ G+ G L EA
Sbjct: 359 GLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKS--LCQSNICVANAILDMYGKCGALVEA 416

Query: 240 ETLIENADCRHDSSLWEVLLGA 261
             + E    R D+  W  ++ A
Sbjct: 417 CLVFEEMVSR-DAVSWNAIIAA 437



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 35/236 (14%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+ HA++I       V V + L+ MY KC  ++ + +VFD M ++++VS +A+L GY  
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 65  TGDFESVIRIFREMEE----------------------IDLF-------------SFGIV 89
            GD     ++F  M E                      ID+F             +F +V
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L++C+ L     G ++H   ++     DV+  SAL+D+YAKC  +D + Q F  MP +N 
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNW 240

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           ++W+++I+G  QN      L +F +M + G      +F  V  +C+ +  +  G +
Sbjct: 241 VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQ 296



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 143/310 (46%), Gaps = 23/310 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++H   +      +VV+ ++ +DMY KC  + ++ ++F+ +   N  S +A++ G
Sbjct: 291 LRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVG 350

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           Y ++           +   +D  S     RACA +     G +VH   ++     ++ + 
Sbjct: 351 YARSD----------KGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVA 400

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +A++D+Y KCG +  A  +F +M  R+ ++WN++I+   QNG  E+ L +F       ++
Sbjct: 401 NAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSR 460

Query: 182 PDHVSFIGV--LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
               SF+G+  +   S  G++++  K    + ++  +      +N ++         EEA
Sbjct: 461 LGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVS-----WNAIISGFSLQKQSEEA 515

Query: 240 ETLIE---NADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCHLSYVLLDN 294
           +             D+  +  +L  C       + +++  +I+  EL+ D ++S  L+D 
Sbjct: 516 QKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVD- 574

Query: 295 VYRAVGRWND 304
           +Y   G   D
Sbjct: 575 MYSKCGNMQD 584



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA++I   L  +  + S+LVDMY KCG + +   +F+K   ++ V+ +A++ GY Q
Sbjct: 550 GKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQ 609

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  ++IF  M+    + +  +F  VLRAC  +  +  G       +   G  D  +
Sbjct: 610 HGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGL-DPQL 668

Query: 121 E--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMIS 157
           E  S +VD+  + G V  A ++   MP   + + W +++S
Sbjct: 669 EHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLS 708



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 4/114 (3%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +F  + + C+   AL  GK+ H + I       V + + L+ +Y KC  ++FA ++F  M
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           P R+ ++WN+M+ G+A  G    A ++FD M E     D VS+  ++S   H G
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPE----RDVVSWNSLISGYLHNG 153


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  277 bits (708), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 138/336 (41%), Positives = 209/336 (62%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH  ++  GL  ++ V ++LV M+  CG +  +  +F+ M K++ VS + ++ G
Sbjct: 530 LELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAG 589

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +     F+ M+E     D  +F  +L ACA   AL  G+ +H      +   D
Sbjct: 590 FVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCD 649

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V++ + L+ +Y KCG ++ AHQ+F ++P +N+ +W SMI+G+AQ+GRG+EAL +F  M +
Sbjct: 650 VLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQ 709

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F+G LSAC+H GLI+ G  HF SM KE+ I+P++EHY CMVDL GRAGLL 
Sbjct: 710 EGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLN 768

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I       DS +W  LLGAC    N  +AE+ A+K +EL P+ +  +V+L N+Y 
Sbjct: 769 EAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYA 828

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G W +  K+R +M   GV K PG+SWIE + K++
Sbjct: 829 AAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVH 864



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 151/288 (52%), Gaps = 6/288 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+G+++   +I  G   +  V ++L+ MY KCG + ++HRVF+K+ K+N V+ +A++  
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITA 488

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q   +++ +  F    +E  + +  +F  +L  C    +L LGK VH   ++     D
Sbjct: 489 YVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESD 548

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV ++  CG +  A  +F  MP R+L++WN++I+GF Q+G+ + A   F  M E
Sbjct: 549 LHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQE 608

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F G+L+AC+    +  GR+  A +T E      +     ++ +  + G +E
Sbjct: 609 SGIKPDKITFTGLLNACASPEALTEGRRLHALIT-EAAFDCDVLVGTGLISMYTKCGSIE 667

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPD 284
           +A  +      ++  S   ++ G     R     E   +   E +KPD
Sbjct: 668 DAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPD 715



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 139/242 (57%), Gaps = 5/242 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ ++  +   G+  ++ + ++L++MY KCG    + ++FD M +K+  S + LL G
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G +E   ++  +M +     D  +F  +L ACA    +  G+E++   ++     D
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL++++ KCG +  A ++F  +P R+L+TW SMI+G A++GR ++A  +F  M E
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD V+F+ +L AC+H   +++G+K  A M KE     +I     ++ +  + G +E
Sbjct: 306 EGVQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSMYTKCGSME 364

Query: 238 EA 239
           +A
Sbjct: 365 DA 366



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 127/208 (61%), Gaps = 4/208 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +G+E++  ++  G   ++ V ++L++M+ KCG + ++ +VFD +  ++ V+ ++++ G
Sbjct: 227 VDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITG 286

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G F+    +F+ MEE     D  +F  +LRAC    AL  GK+VH +        +
Sbjct: 287 LARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTE 346

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +A++ +Y KCG ++ A ++F  +  RN+++W +MI+GFAQ+GR +EA   F+ M E
Sbjct: 347 IYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G +P+ V+F+ +L ACS    + RG++
Sbjct: 407 SGIEPNRVTFMSILGACSSPSALKRGQQ 434



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 151/290 (52%), Gaps = 10/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK+VHA++  +G    + V ++++ MY KCG ++++  VFD +  +N VS +A++ G
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +     F +M E  +     +F  +L AC+  +AL+ G+++    I      D
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ +YAKCG +  AH++F ++  +N++ WN+MI+ + Q+ + + AL  F  + +
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLK 507

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G KP+  +F  +L+ C     ++ G+  HF  M  +  ++  +   N +V +    G L
Sbjct: 508 EGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM--KAGLESDLHVSNALVSMFVNCGDL 565

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
             A+ L  +   R D   W  ++          VA    K + E  +KPD
Sbjct: 566 MSAKNLFNDMPKR-DLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPD 614



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 97/168 (57%), Gaps = 6/168 (3%)

Query: 50  KNSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLF--SFGIVLRACAGLAALRLGKEV 105
           K++  ++A+L    + G F   +++   ++   I ++  ++  +L+ C     L  G+ +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 106 HCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
           +  +I++SG + D+ + + L+++YAKCG    A QIF  M  +++ +WN ++ G+ Q+G 
Sbjct: 133 Y-NHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            EEA ++ + M +   KPD  +F+ +L+AC+    +D+GR+ +  + K
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK 239


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  277 bits (708), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 134/337 (39%), Positives = 217/337 (64%), Gaps = 19/337 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+++HA+    G   ++ + ++LV +Y +CG V E++  FD++  K++VS ++L+ G
Sbjct: 555 LDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSG 614

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           + Q+G FE  + IF +M     EI+ F+FG  + A A +A +R+GK++H   IR++G   
Sbjct: 615 FAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGM-IRKTGYDS 673

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + +AL+ LYAKCG +D              I+WNSMI+G++Q+G G EAL++F+DM 
Sbjct: 674 ETEVSNALITLYAKCGTID-------------DISWNSMITGYSQHGCGFEALKLFEDMK 720

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +    P+HV+F+GVLSACSH+GL+D G  +F SM++ + + PK EHY C+VDLLGR+GLL
Sbjct: 721 QLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLL 780

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
             A+  +E    + D+ +W  LL AC   +N  + E  A  ++EL+P    +YVL+ N+Y
Sbjct: 781 SRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMY 840

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              G+W+   + R +MK  GVKK PG+SW+E ++ ++
Sbjct: 841 AVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVH 877



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 135/238 (56%), Gaps = 5/238 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H +V+  G   NV V S L+DMY K G +D + ++F ++ + + VS +A++ GY Q
Sbjct: 457 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQ 516

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              F   + +F+EM++     D   F   + ACAG+ AL  G+++H Q        D+ I
Sbjct: 517 HDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSI 576

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV LYA+CG V  A+  F Q+  ++ ++WNS++SGFAQ+G  EEAL IF  M + G 
Sbjct: 577 GNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGL 636

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           + +  +F   +SA +++  +  G K    M ++     + E  N ++ L  + G +++
Sbjct: 637 EINSFTFGSAVSAAANIANVRIG-KQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD 693



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 134/263 (50%), Gaps = 23/263 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+ H+  I  G+  ++VVE SL+D+Y KC  +  +H  F                 
Sbjct: 368 LPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF---------------LC 412

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  +     +IF +M+      + F++  +L+ C  L A  LG+++H Q ++     +
Sbjct: 413 YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFN 472

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S L+D+YAK G +D A +IF ++   ++++W +MI+G+ Q+ +  EAL +F +M +
Sbjct: 473 VYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQD 532

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G K D++ F   +SAC+ +  +D+GR+ H  S    Y     I   N +V L  R G +
Sbjct: 533 QGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIG--NALVSLYARCGKV 590

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
            EA    +    + D+  W  L+
Sbjct: 591 REAYAAFDQIYAK-DNVSWNSLV 612



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 160/333 (48%), Gaps = 33/333 (9%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++HAK IT G   +  + + L+D+Y K G +  + +VF+ +  ++SVS  A++ G  Q 
Sbjct: 184 EQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQN 243

Query: 66  GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV 125
           G  E  + +F +          IVL AC  +     GK++H   +++    +  + +ALV
Sbjct: 244 GYEEEAMLLFCQ----------IVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALV 293

Query: 126 DLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185
            LY++ G +  A QIF  M  R+ +++NS+ISG AQ G    AL +F  M     KPD V
Sbjct: 294 TLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCV 353

Query: 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE----- 240
           +   +LSAC+ +G +  G K F S   +  +   I     ++DL  +   ++ A      
Sbjct: 354 TVASLLSACASVGALPNG-KQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLC 412

Query: 241 --------------TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
                         T ++      +   +  +L  CTT     + E++  ++++   + +
Sbjct: 413 YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFN 472

Query: 285 CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
            ++S VL+D +Y   G+ + A KI   +K + V
Sbjct: 473 VYVSSVLID-MYAKHGKLDHALKIFRRLKENDV 504



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 122/264 (46%), Gaps = 23/264 (8%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H  V+  G      V ++LV +Y + G +  + ++F  M +++ VS ++L+ G  Q
Sbjct: 270 GKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQ 329

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     + +F++M    ++ D  +   +L ACA + AL  GK+ H   I+     D+++
Sbjct: 330 QGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVV 389

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           E +L+DLY KC  +  AH+ FL                + Q     ++ +IF  M   G 
Sbjct: 390 EGSLLDLYVKCSDIKTAHEFFL---------------CYGQLDNLNKSFQIFTQMQIEGI 434

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            P+  ++  +L  C+ +G  D G + H   +   ++    +   + ++D+  + G L+ A
Sbjct: 435 VPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVS--SVLIDMYAKHGKLDHA 492

Query: 240 ETLIENADCRHDSSLWEVLLGACT 263
             +       +D   W  ++   T
Sbjct: 493 LKIFRRLK-ENDVVSWTAMIAGYT 515



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 119/265 (44%), Gaps = 21/265 (7%)

Query: 27  LVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEID 82
           L+D Y   G ++ +  VFD+M  ++    + +   +        V  +FR M     E D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 83  LFSFGIVLRACAGLA-ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
              F +VLR C+G A + R  +++H + I         I + L+DLY K G +  A ++F
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
             +  R+ ++W +MISG +QNG  EEA+ +F  +              VLSAC+ +   +
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFE 268

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG- 260
            G++    + K+     +    N +V L  R+G L  AE +      R   S   ++ G 
Sbjct: 269 FGKQLHGLVLKQ-GFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGL 327

Query: 261 ACTTFRNAHVAERVAKKIMELKPDC 285
           A   + N  +A      +   KPDC
Sbjct: 328 AQQGYINRALALFKKMNLDCQKPDC 352


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  277 bits (708), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 150/374 (40%), Positives = 222/374 (59%), Gaps = 42/374 (11%)

Query: 2   LKQGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKM------------- 47
           +++G ++HA+V+      N +V+ ++LVDMY KC  V+E+  VFD+M             
Sbjct: 268 IREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVC 327

Query: 48  ------------------LKKNSVSSSALLQGYCQTGDFESVIRIF----REMEEIDLFS 85
                             ++KN VS +AL+ GY Q G+ E  +R+F    RE      ++
Sbjct: 328 GYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYT 387

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIR-----RSGCK-DVIIESALVDLYAKCGCVDFAHQ 139
           FG +L ACA LA L+LG++ H Q ++     +SG + D+ + ++L+D+Y KCG V+    
Sbjct: 388 FGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCL 447

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +M  R++++WN+MI G+AQNG G  AL IF  M   G KPDHV+ IGVLSACSH GL
Sbjct: 448 VFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGL 507

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           ++ GR++F SM  E  + P  +H+ CMVDLLGRAG L+EA  LI+    + D+ +W  LL
Sbjct: 508 VEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLL 567

Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
            AC    N  + + VA+K+ME+ P     YVLL N+Y  +GRW D  ++R  M+  GV K
Sbjct: 568 AACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIK 627

Query: 320 MPGKSWIEANSKLN 333
            PG SWIE  S+++
Sbjct: 628 QPGCSWIEIQSRVH 641



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 141/281 (50%), Gaps = 35/281 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ---- 60
            + +HA++I       + +++ LVD YGKCG  +++ +VFD+M ++N+ S +A+L     
Sbjct: 38  ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTK 97

Query: 61  ---------------------------GYCQTGDFESVIRIFREMEEIDL----FSFGIV 89
                                      G+ Q   FE  +R F +M   D     +SFG  
Sbjct: 98  FGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSA 157

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L ACAGL  L +G ++H    +     DV + SALVD+Y+KCG V  A + F  M VRN+
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNI 217

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ++WNS+I+ + QNG   +AL +F  M + G +PD ++   V+SAC+    I  G +  A 
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHAR 277

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
           + K  + +  +   N +VD+  +   + EA  + +    R+
Sbjct: 278 VVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRN 318



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 144/284 (50%), Gaps = 41/284 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++HA +       +V + S+LVDMY KCG+V  + R FD M  +N VS ++L+  
Sbjct: 167 LNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITC 226

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y Q G     + +F  M     E D  +   V+ ACA  +A+R G ++H + ++R   + 
Sbjct: 227 YEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRN 286

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVR----------------------------- 147
           D+++ +ALVD+YAKC  V+ A  +F +MP+R                             
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMM 346

Query: 148 --NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             N+++WN++I+G+ QNG  EEA+R+F  +      P H +F  +L+AC+++  +  GR+
Sbjct: 347 EKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQ 406

Query: 206 HFASMTK-----EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
               + K     +   +  I   N ++D+  + G++E+   + E
Sbjct: 407 AHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFE 450



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 114/264 (43%), Gaps = 35/264 (13%)

Query: 71  VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
           V ++  E+  +D   F  +L +C    +    + +H + I+     ++ I++ LVD Y K
Sbjct: 7   VQKLVGELCFLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGK 66

Query: 131 CGCVDFAHQIFLQMPVRNLI-------------------------------TWNSMISGF 159
           CG  + A ++F +MP RN                                 +WN+M+SGF
Sbjct: 67  CGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGF 126

Query: 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219
           AQ+ R EEALR F DM       +  SF   LSAC+ +  ++ G +  A ++K  R    
Sbjct: 127 AQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKS-RYLLD 185

Query: 220 IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM 279
           +   + +VD+  + G++  A+   +    R+  S W  L+  C   +N    + +   +M
Sbjct: 186 VYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVS-WNSLI-TCYE-QNGPAGKALEVFVM 242

Query: 280 ELKPDCHLSYVLLDNVYRAVGRWN 303
            +        + L +V  A   W+
Sbjct: 243 MMDNGVEPDEITLASVVSACASWS 266


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  276 bits (707), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 139/328 (42%), Positives = 208/328 (63%), Gaps = 4/328 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +GK++H+    LG    + V S++VDMY KCG + ++ + F+ + + + V  ++++ GY 
Sbjct: 338 EGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYV 397

Query: 64  QTGDFESVIRIF--REMEEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q GD+E  + ++   +ME +  +  +   VLRAC+ LAAL  GK++H + I+     +V 
Sbjct: 398 QNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVP 457

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I SAL  +Y KCG +D  + IF +MP R++I+WN+MISG +QNG G +AL +F+ M   G
Sbjct: 458 IGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEG 517

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD V+F+ +LSACSHMGL+DRG ++F  M  E+ I P +EHY CMVD+L RAG L EA
Sbjct: 518 IKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEA 577

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
           +  IE+A   H   LW +LLGAC   RN  +     +K++EL      +YVLL ++Y A+
Sbjct: 578 KEFIESATVDHGLCLWRILLGACKNHRNYELGVYAGEKLVELGSPESSAYVLLSSIYTAL 637

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           G   +  ++R +MK  GV K PG SWIE
Sbjct: 638 GDRENVERVRRIMKARGVNKEPGCSWIE 665



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 139/259 (53%), Gaps = 6/259 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+ H+  +  G  G+V V SSL++MY K G V ++ ++FD+M ++N+VS + ++ GY  
Sbjct: 137 GKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYAS 196

Query: 65  TGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +   +  + +F    RE E  + F+   VL A      +  G++VH   I+      V +
Sbjct: 197 SDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSV 256

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV +YAKCG +D A + F     +N ITW++M++G+AQ G  ++AL++F+ M   G 
Sbjct: 257 ANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGV 316

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P   + +GV++ACS +  +  G K   S   +     ++   + +VD+  + G L +A 
Sbjct: 317 LPSEFTLVGVINACSDLCAVVEG-KQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADAR 375

Query: 241 TLIENADCRHDSSLWEVLL 259
              E    + D  LW  ++
Sbjct: 376 KGFECVQ-QPDVVLWTSII 393



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 153/290 (52%), Gaps = 16/290 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH+  I  GL   V V ++LV MY KCG +D++ R F+    KNS++ SA++ GY Q
Sbjct: 238 GRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQ 297

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD +  +++F +M    +    F+   V+ AC+ L A+  GK++H    +      + +
Sbjct: 298 GGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYV 357

Query: 121 ESALVDLYAKCGCVDFAHQIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            SA+VD+YAKCG +  A + F  +Q P  +++ W S+I+G+ QNG  E  L ++  M   
Sbjct: 358 LSAVVDMYAKCGSLADARKGFECVQQP--DVVLWTSIITGYVQNGDYEGGLNLYGKMQME 415

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
              P+ ++   VL ACS +  +D+G++  A + K Y  K ++   + +  +  + G L++
Sbjct: 416 RVIPNELTMASVLRACSSLAALDQGKQMHARIIK-YGFKLEVPIGSALSAMYTKCGSLDD 474

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAH---VAERVAKKIME-LKPD 284
              +      R D   W  ++   +  +N H     E   K ++E +KPD
Sbjct: 475 GYLIFWRMPSR-DVISWNAMISGLS--QNGHGNKALELFEKMLLEGIKPD 521



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALLQG 61
           +G+ +HA+++  G   ++ V ++ +++Y K   +  +  +FD +    K+ VS ++L+  
Sbjct: 29  KGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINA 88

Query: 62  YCQTGDFES---VIRIFREMEEID-----LFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           + Q     S    I +FR M   +       +   V  A + L+ +  GK+ H   ++  
Sbjct: 89  FSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTG 148

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              DV + S+L+++Y K G V  A ++F +MP RN ++W +MISG+A +   ++A+ +F+
Sbjct: 149 CSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFE 208

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M       +  +   VLSA +    +  GR+   S+  +  +   +   N +V +  + 
Sbjct: 209 LMRREEEIQNEFALTSVLSALTSDVFVYTGRQ-VHSLAIKNGLLAIVSVANALVTMYAKC 267

Query: 234 GLLEEAETLIE 244
           G L++A    E
Sbjct: 268 GSLDDAVRTFE 278



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 5/171 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QGK++HA++I  G    V + S+L  MY KCG +D+ + +F +M  ++ +S +A++ G
Sbjct: 437 LDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISG 496

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G     + +F +M  E I  D  +F  +L AC+ +  +  G E             
Sbjct: 497 LSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAP 556

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
           ++   A +VD+ ++ G ++ A +      V + +    ++ G  +N R  E
Sbjct: 557 MVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACKNHRNYE 607


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  276 bits (706), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 144/338 (42%), Positives = 209/338 (61%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G  V   V+   +  N  + S+L+ MYGKCG +  + R+FD M KK+ V+ +A++ G
Sbjct: 244 LKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITG 303

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  I++F++M       D  +   +L ACA + AL LGK+V      R    D
Sbjct: 304 YAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDD 363

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           V + +ALVD+YAKCG +D A ++F  MP +N ++WN+MIS  A +G+ +EAL +F  M  
Sbjct: 364 VYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMN 423

Query: 177 EGGT-KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           EGGT  P+ ++F+GVLSAC H GL+D GR+ F  M+  + + PKIEHY+CMVDL  RAG 
Sbjct: 424 EGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGH 483

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           LEEA   +     + D  +   LLGAC   +N  ++ERV K ++EL+P    +YV+   +
Sbjct: 484 LEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKL 543

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           Y  + RW+D+ ++R LMK  GV K PG SWI+ NS+L+
Sbjct: 544 YANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLH 581



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 147/282 (52%), Gaps = 6/282 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+  H  VI  GL  +  V  SL+ MY +CG + ++ +VFD++ +K+ VS ++++ G
Sbjct: 143 VENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISG 202

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +       + +FREM E        S   VL AC  L  L+LG  V    +      +
Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SAL+ +Y KCG +  A +IF  M  ++ +TWN+MI+G+AQNG  EEA+++F DM  
Sbjct: 263 YFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRM 322

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             T PD ++ IG+LSAC+ +G +D G K       E   +  +     +VD+  + G L+
Sbjct: 323 SSTAPDQITLIGILSACASIGALDLG-KQVEIYASERGFQDDVYVGTALVDMYAKCGSLD 381

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM 279
            A  +      +++ S W  ++ A      A  A  + K +M
Sbjct: 382 NAFRVFYGMPKKNEVS-WNAMISALAFHGQAQEALALFKSMM 422



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 171/373 (45%), Gaps = 68/373 (18%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHR--VFDKMLKKNSVSSSALL 59
           +KQ K++HA+++T     ++   +S   +Y    L D ++    F  +L     S + ++
Sbjct: 45  IKQLKQIHAQLLT----NSIHKPNSF--LYKIADLKDFAYASVFFSNILDPTEYSFNVMI 98

Query: 60  QGYCQTGDFESV-IRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           +G     +  S+ +  +  M+ + L     ++  +  AC+ L A+  G+  HC  IRR  
Sbjct: 99  RGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGL 158

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            +D  +  +L+ +YA+CG +  A ++F ++  ++L++WNSMISG+++     EA+ +F +
Sbjct: 159 DEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFRE 218

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRG------------------------------- 203
           M E G +P+ +S + VL AC  +G +  G                               
Sbjct: 219 MMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGD 278

Query: 204 ----RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV-- 257
               R+ F SM K+ ++      +N M+    + G+ EEA  L +  D R  S+  +   
Sbjct: 279 LVSARRIFDSMKKKDKVT-----WNAMITGYAQNGMSEEAIKLFQ--DMRMSSTAPDQIT 331

Query: 258 ---LLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312
              +L AC +     + ++V     E   + D ++   L+D +Y   G  ++AF++    
Sbjct: 332 LIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVD-MYAKCGSLDNAFRV---- 386

Query: 313 KYSGVKKMPGKSW 325
            + G+ K    SW
Sbjct: 387 -FYGMPKKNEVSW 398


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/338 (42%), Positives = 209/338 (61%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G  V   V+   +  N  + S+L+ MYGKCG +  + R+FD M KK+ V+ +A++ G
Sbjct: 244 LKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITG 303

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  I++F++M       D  +   +L ACA + AL LGK+V      R    D
Sbjct: 304 YAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDD 363

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           V + +ALVD+YAKCG +D A ++F  MP +N ++WN+MIS  A +G+ +EAL +F  M  
Sbjct: 364 VYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMN 423

Query: 177 EGGT-KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           EGGT  P+ ++F+GVLSAC H GL+D GR+ F  M+  + + PKIEHY+CMVDL  RAG 
Sbjct: 424 EGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGH 483

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           LEEA   +     + D  +   LLGAC   +N  ++ERV K ++EL+P    +YV+   +
Sbjct: 484 LEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKL 543

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           Y  + RW+D+ ++R LMK  GV K PG SWI+ NS+L+
Sbjct: 544 YANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLH 581



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 147/282 (52%), Gaps = 6/282 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+  H  VI  GL  +  V  SL+ MY +CG + ++ +VFD++ +K+ VS ++++ G
Sbjct: 143 VENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISG 202

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +       + +FREM E        S   VL AC  L  L+LG  V    +      +
Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SAL+ +Y KCG +  A +IF  M  ++ +TWN+MI+G+AQNG  EEA+++F DM  
Sbjct: 263 YFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRM 322

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             T PD ++ IG+LSAC+ +G +D G K       E   +  +     +VD+  + G L+
Sbjct: 323 SSTAPDQITLIGILSACASIGALDLG-KQVEIYASERGFQDDVYVGTALVDMYAKCGSLD 381

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM 279
            A  +      +++ S W  ++ A      A  A  + K +M
Sbjct: 382 NAFRVFYGMPNKNEVS-WNAMISALAFHGQAQEALALFKSMM 422



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 176/381 (46%), Gaps = 71/381 (18%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHR--VFDKMLKKNSVSSSALL 59
           +KQ K++HA+++T     ++   +S   +Y    L D ++    F  +L     S + ++
Sbjct: 45  IKQLKQIHAQLLT----NSIHKPNSF--LYKIADLKDFAYASVFFSNILDPTEYSFNVMI 98

Query: 60  QGYCQTGDFESV-IRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           +G     +  S+ +  +  M+ + L     ++  +  AC+ L A+  G+  HC  IRR  
Sbjct: 99  RGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGL 158

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            +D  +  +L+ +YA+CG +  A ++F ++  ++L++WNSMISG+++     EA+ +F +
Sbjct: 159 DEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFRE 218

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRG------------------------------- 203
           M E G +P+ +S + VL AC  +G +  G                               
Sbjct: 219 MMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGD 278

Query: 204 ----RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV-- 257
               R+ F SM K+ ++      +N M+    + G+ EEA  L +  D R  S+  +   
Sbjct: 279 LVSARRIFDSMKKKDKVT-----WNAMITGYAQNGMSEEAIKLFQ--DMRMSSTAPDQIT 331

Query: 258 ---LLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312
              +L AC +     + ++V     E   + D ++   L+D +Y   G  ++AF++    
Sbjct: 332 LIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVD-MYAKCGSLDNAFRV---- 386

Query: 313 KYSGVKKMPGKSWIEANSKLN 333
            + G   MP K+ +  N+ ++
Sbjct: 387 -FYG---MPNKNEVSWNAMIS 403


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 212/336 (63%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++HA +   G+  ++   +SL+ MY K GL+D++  +FD+M  K++VS SAL+ G
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E    +F++M+    E D  +   ++ AC+ LAAL+ G+  H   I R    +
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASE 360

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I +AL+D+YAKCG +D + Q+F  MP R++++WN+MI+G+  +G G+EA  +F +M  
Sbjct: 361 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 420

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V+FI +LSACSH GL+  G+  F  M   Y + P++EHY CMVDLL R G L+
Sbjct: 421 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLD 480

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I++   R D  +W  LLGAC  ++N  + ++V++ I EL P+   ++VLL N+Y 
Sbjct: 481 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYS 540

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GR+++A ++R + K  G KK PG SWIE N  L+
Sbjct: 541 AAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLH 576



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 138/275 (50%), Gaps = 19/275 (6%)

Query: 2   LKQGKEVHAKVITLGLCGN----------VVVESSLVDMYGKCGLVDESHRVFDKMLKKN 51
           L QG  VHA  I   L  N          V++ ++L+DMY KCG +  + RVFD M  +N
Sbjct: 129 LAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 188

Query: 52  SVSSSALLQGYCQTGDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVH 106
            V+ SAL+ G+           +F+ M    L      S    LRACA L  LR+G+++H
Sbjct: 189 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLH 248

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
               +     D+   ++L+ +YAK G +D A  +F +M V++ +++++++SG+ QNGR E
Sbjct: 249 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAE 308

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNC 225
           EA  +F  M     +PD  + + ++ ACSH+  +  GR  H + + +    +  I   N 
Sbjct: 309 EAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI--CNA 366

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           ++D+  + G ++ +  +      R D   W  ++ 
Sbjct: 367 LIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIA 400



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 21/299 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H   I  GL  ++ V ++L+DMY KC  + ++  +F  M  ++ V+ +A+L GY  
Sbjct: 29  GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88

Query: 65  TGDFESVIRIFREME------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR------- 111
            G +   +     M+        +  +   +L   A   AL  G  VH   IR       
Sbjct: 89  HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 148

Query: 112 --RSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
             +S   D V++ +AL+D+YAKCG + +A ++F  MP RN +TW+++I GF    R  +A
Sbjct: 149 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 208

Query: 169 LRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
             +F  M  +G       S    L AC+ +  +  G +  A + K   +   +   N ++
Sbjct: 209 FLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS-GVHADLTAGNSLL 267

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
            +  +AGL+++A  L +    + D+  +  L+        A  A  V KK+    ++PD
Sbjct: 268 SMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 325



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 12/188 (6%)

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           ++F   L+AC+ LA    G+ +H   I      D+ + +AL+D+Y KC C+  A  IF  
Sbjct: 11  YTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 70

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALR--IFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
           MP R+L+ WN+M++G+A +G    A+   +   M     +P+  + + +L   +  G + 
Sbjct: 71  MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 130

Query: 202 RGRKHFA---------SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           +G    A         +   + ++   +     ++D+  + G L  A  + +    R++ 
Sbjct: 131 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 190

Query: 253 SLWEVLLG 260
           + W  L+G
Sbjct: 191 T-WSALIG 197


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 212/336 (63%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++HA +   G+  ++   +SL+ MY K GL+D++  +FD+M  K++VS SAL+ G
Sbjct: 356 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 415

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E    +F++M+    E D  +   ++ AC+ LAAL+ G+  H   I R    +
Sbjct: 416 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASE 475

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I +AL+D+YAKCG +D + Q+F  MP R++++WN+MI+G+  +G G+EA  +F +M  
Sbjct: 476 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 535

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V+FI +LSACSH GL+  G+  F  M   Y + P++EHY CMVDLL R G L+
Sbjct: 536 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLD 595

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I++   R D  +W  LLGAC  ++N  + ++V++ I EL P+   ++VLL N+Y 
Sbjct: 596 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYS 655

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GR+++A ++R + K  G KK PG SWIE N  L+
Sbjct: 656 AAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLH 691



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 138/275 (50%), Gaps = 19/275 (6%)

Query: 2   LKQGKEVHAKVITLGLCGN----------VVVESSLVDMYGKCGLVDESHRVFDKMLKKN 51
           L QG  VHA  I   L  N          V++ ++L+DMY KCG +  + RVFD M  +N
Sbjct: 244 LAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 303

Query: 52  SVSSSALLQGYCQTGDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVH 106
            V+ SAL+ G+           +F+ M    L      S    LRACA L  LR+G+++H
Sbjct: 304 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLH 363

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
               +     D+   ++L+ +YAK G +D A  +F +M V++ +++++++SG+ QNGR E
Sbjct: 364 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAE 423

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNC 225
           EA  +F  M     +PD  + + ++ ACSH+  +  GR  H + + +    +  I   N 
Sbjct: 424 EAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI--CNA 481

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           ++D+  + G ++ +  +      R D   W  ++ 
Sbjct: 482 LIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIA 515



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 21/299 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H   I  GL  ++ V ++L+DMY KC  + ++  +F  M  ++ V+ +A+L GY  
Sbjct: 144 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 203

Query: 65  TGDFESVIRIFREME------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR------- 111
            G +   +     M+        +  +   +L   A   AL  G  VH   IR       
Sbjct: 204 HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNR 263

Query: 112 --RSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
             +S   D V++ +AL+D+YAKCG + +A ++F  MP RN +TW+++I GF    R  +A
Sbjct: 264 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 323

Query: 169 LRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
             +F  M  +G       S    L AC+ +  +  G +  A + K   +   +   N ++
Sbjct: 324 FLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS-GVHADLTAGNSLL 382

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
            +  +AGL+++A  L +    + D+  +  L+        A  A  V KK+    ++PD
Sbjct: 383 SMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 440



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 113/249 (45%), Gaps = 30/249 (12%)

Query: 35  GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESV------IRIFREMEEIDLFSFGI 88
           G +  +H +FD++   +  + + L++ Y  +    +        R+ R     + ++F  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
            L+AC+ LA    G+ +H   I      D+ + +AL+D+Y KC C+  A  IF  MP R+
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 149 LITWNSMISGFAQNGRGEEALR--IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           L+ WN+M++G+A +G    A+   +   M     +P+  + + +L   +  G + +G   
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG--- 247

Query: 207 FASMTKEYRIKPKIEHYN---------------CMVDLLGRAGLLEEAETLIENADCRHD 251
             +    YRI+  + H N                ++D+  + G L  A  + +    R++
Sbjct: 248 --TSVHAYRIRACL-HSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE 304

Query: 252 SSLWEVLLG 260
            + W  L+G
Sbjct: 305 VT-WSALIG 312


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 141/336 (41%), Positives = 203/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K+G EVH      G   +V V SSL+DMY  C   D S +VFD +  ++ +  ++LL G
Sbjct: 186 VKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAG 245

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  + IFR M +  +     +F  ++  C  LA+LR GK++H   I      +
Sbjct: 246 CAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDN 305

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I S+L+D+Y KCG +  AH IF +M   ++++W +MI G+A +G   EAL +F+ M  
Sbjct: 306 VFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMEL 365

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  KP+H++F+ VL+ACSH GL+D+G K+F SM+  Y I P +EH+  + D LGRAG L+
Sbjct: 366 GNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELD 425

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I     +  +S+W  LL AC   +N  +AE VAKKIMEL+P    S+V+L N+Y 
Sbjct: 426 EAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYS 485

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GRWN+A  +R  M+  G+KK P  SWIE  SKL+
Sbjct: 486 ASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLH 521



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 101/184 (54%), Gaps = 4/184 (2%)

Query: 26  SLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEI 81
           ++VD+ G     +   +VFD+M++++ VS + L+ G  + G     +   R+M       
Sbjct: 109 AIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRP 168

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D F+   VL   A  A ++ G EVH    R     DV + S+L+D+YA C   D++ ++F
Sbjct: 169 DSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVF 228

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
             +PVR+ I WNS+++G AQNG  EEAL IF  M + G +P  V+F  ++  C ++  + 
Sbjct: 229 DNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLR 288

Query: 202 RGRK 205
            G++
Sbjct: 289 FGKQ 292



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 25/208 (12%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC----------V 134
           S    L++CA L    LG  +H   IR     D    +AL++LY K  C          V
Sbjct: 52  SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIV 111

Query: 135 DFA---------HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185
           D            ++F +M  R++++WN+++ G A+ GR  EAL     M   G +PD  
Sbjct: 112 DVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSF 171

Query: 186 SFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           +   VL   +    + RG + H  +    +     +   + ++D+       + +  + +
Sbjct: 172 TLSTVLPIFAECADVKRGLEVHGFAFRNGF--DSDVFVGSSLIDMYANCTRTDYSVKVFD 229

Query: 245 NADCRHDSSLWEVLLGACTTFRNAHVAE 272
           N   R D  LW  LL  C   +N  V E
Sbjct: 230 NLPVR-DHILWNSLLAGCA--QNGSVEE 254


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 212/336 (63%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++HA +   G+  ++   +SL+ MY K GL+D++  +FD+M  K++VS SAL+ G
Sbjct: 356 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 415

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E    +F++M+    E D  +   ++ AC+ LAAL+ G+  H   I R    +
Sbjct: 416 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASE 475

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I +AL+D+YAKCG +D + Q+F  MP R++++WN+MI+G+  +G G+EA  +F +M  
Sbjct: 476 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 535

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V+FI +LSACSH GL+  G+  F  M   Y + P++EHY CMVDLL R G L+
Sbjct: 536 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLD 595

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I++   R D  +W  LLGAC  ++N  + ++V++ I EL P+   ++VLL N+Y 
Sbjct: 596 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYS 655

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GR+++A ++R + K  G KK PG SWIE N  L+
Sbjct: 656 AAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLH 691



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 138/275 (50%), Gaps = 19/275 (6%)

Query: 2   LKQGKEVHAKVITLGLCGN----------VVVESSLVDMYGKCGLVDESHRVFDKMLKKN 51
           L QG  VHA  I   L  N          V++ ++L+DMY KCG +  + RVFD M  +N
Sbjct: 244 LAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 303

Query: 52  SVSSSALLQGYCQTGDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVH 106
            V+ SAL+ G+           +F+ M    L      S    LRACA L  LR+G+++H
Sbjct: 304 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLH 363

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
               +     D+   ++L+ +YAK G +D A  +F +M V++ +++++++SG+ QNGR E
Sbjct: 364 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAE 423

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNC 225
           EA  +F  M     +PD  + + ++ ACSH+  +  GR  H + + +    +  I   N 
Sbjct: 424 EAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI--CNA 481

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           ++D+  + G ++ +  +      R D   W  ++ 
Sbjct: 482 LIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIA 515



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 21/299 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H   I  GL  ++ V ++L+DMY KC  + ++  +F  M  ++ V+ +A+L GY  
Sbjct: 144 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 203

Query: 65  TGDFESVIRIFREME------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR------- 111
            G +   +     M+        +  +   +L   A   AL  G  VH   IR       
Sbjct: 204 HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 263

Query: 112 --RSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
             +S   D V++ +AL+D+YAKCG + +A ++F  MP RN +TW+++I GF    R  +A
Sbjct: 264 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 323

Query: 169 LRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
             +F  M  +G       S    L AC+ +  +  G +  A + K   +   +   N ++
Sbjct: 324 FLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS-GVHADLTAGNSLL 382

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
            +  +AGL+++A  L +    + D+  +  L+        A  A  V KK+    ++PD
Sbjct: 383 SMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 440



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 111/243 (45%), Gaps = 18/243 (7%)

Query: 35  GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESV------IRIFREMEEIDLFSFGI 88
           G +  +H +FD++   +  + + L++ Y  +    +        R+ R     + ++F  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
            L+AC+ LA    G+ +H   I      D+ + +AL+D+Y KC C+  A  IF  MP R+
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 149 LITWNSMISGFAQNGRGEEALR--IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           L+ WN+M++G+A +G    A+   +   M     +P+  + + +L   +  G + +G   
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 207 FA---------SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
            A         +   + ++   +     ++D+  + G L  A  + +    R++ + W  
Sbjct: 251 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT-WSA 309

Query: 258 LLG 260
           L+G
Sbjct: 310 LIG 312


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/337 (40%), Positives = 209/337 (62%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +H   I LG+  +V + ++L+ +YGKCG V+ +  +FD M+ +N VS +A++  
Sbjct: 245 LNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAA 304

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y Q     + +++FR M+    + D  +   V+ ACA L AL  G+ +H + ++R G + 
Sbjct: 305 YEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMH-ELVKRKGLEI 363

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V I +AL+D+YAKCG +D A ++F ++P R++++W SMI   A +G GE+AL++F  M 
Sbjct: 364 NVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMK 423

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G KP+  +F  V +AC H GL++ GRKHF SM ++Y I P +EH  CMVDLLGRAG L
Sbjct: 424 DEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSL 483

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EA   I+      D S+W  LLG+C    N  +AE VA+K+  L P     YVL+ N+Y
Sbjct: 484 MEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIY 543

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              GRW DA ++R LM+   +KK+PG S +E N + +
Sbjct: 544 AEAGRWEDAARLRKLMEERELKKIPGHSLVEVNRRFH 580



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 160/289 (55%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GKEVH  ++  G   +V V+SSLV MY + G       VF +M+ +N VS +A++ G
Sbjct: 144 LREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAG 203

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q   F+  + +FREM     + +  +   VL ACAGL  L LGK +H   I+     D
Sbjct: 204 YVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPD 263

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+ LY KCG V+ A  +F  M V+NL++WN+MI+ + QN  G  A+++F  M  
Sbjct: 264 VSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQA 323

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
                D+++ + V+SAC+ +G ++ GR     + K   ++  +   N ++D+  + G ++
Sbjct: 324 EKVDFDYITMVSVISACASLGALNTGR-WMHELVKRKGLEINVSITNALIDMYAKCGNID 382

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            A  + E   CR   S W  ++GAC +  +   A ++  ++ +  +KP+
Sbjct: 383 LAREVFERLPCRSVVS-WTSMIGACASHGHGEDALKLFSRMKDEGVKPN 430



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 163/314 (51%), Gaps = 29/314 (9%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGL---VDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           +HA V+T G   N+++ + L+     C L   +D + ++FD+M K++    + L++GY  
Sbjct: 48  IHALVVTNGCGQNLLLSTKLI--ITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYAD 105

Query: 65  TGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + ++  M    LF    +F  V+R+CA L+ALR GKEVHC  ++     DV +
Sbjct: 106 AGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFV 165

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           +S+LV +Y++ G       +F +M VRN+++W ++I+G+ QN   +E L +F +M   GT
Sbjct: 166 QSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGT 225

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK----PKIEHYNCMVDLLGRAGLL 236
           +P+ V+ + VL AC+ +  ++ G+     +   Y IK    P +   N ++ L G+ G +
Sbjct: 226 QPNAVTLVSVLPACAGLEFLNLGK-----LIHGYGIKLGVDPDVSLTNALIALYGKCGNV 280

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E A +L +    ++  S W  ++ A         A ++ +++   K D    Y+ + +V 
Sbjct: 281 ETARSLFDGMVVQNLVS-WNAMIAAYEQNNAGANAVKLFRRMQAEKVD--FDYITMVSVI 337

Query: 297 RA--------VGRW 302
            A         GRW
Sbjct: 338 SACASLGALNTGRW 351


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 212/336 (63%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++HA +   G+  ++   +SL+ MY K GL+D++  +FD+M  K++VS SAL+ G
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E    +F++M+    E D  +   ++ AC+ LAAL+ G+  H   I R    +
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASE 360

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I +AL+D+YAKCG +D + Q+F  MP R++++WN+MI+G+  +G G+EA  +F +M  
Sbjct: 361 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 420

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V+FI +LSACSH GL+  G+  F  M   Y + P++EHY CMVDLL R G L+
Sbjct: 421 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLD 480

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I++   R D  +W  LLGAC  ++N  + ++V++ I EL P+   ++VLL N+Y 
Sbjct: 481 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYS 540

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GR+++A ++R + K  G KK PG SWIE N  L+
Sbjct: 541 AAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLH 576



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 138/275 (50%), Gaps = 19/275 (6%)

Query: 2   LKQGKEVHAKVITLGLCGN----------VVVESSLVDMYGKCGLVDESHRVFDKMLKKN 51
           L QG  VHA  I   L  N          V++ ++L+DMY KCG +  + RVFD M  +N
Sbjct: 129 LAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 188

Query: 52  SVSSSALLQGYCQTGDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVH 106
            V+ SAL+ G+           +F+ M    L      S    LRACA L  LR+G+++H
Sbjct: 189 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLH 248

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
               +     D+   ++L+ +YAK G +D A  +F +M V++ +++++++SG+ QNGR E
Sbjct: 249 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAE 308

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNC 225
           EA  +F  M     +PD  + + ++ ACSH+  +  GR  H + + +    +  I   N 
Sbjct: 309 EAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI--CNA 366

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           ++D+  + G ++ +  +      R D   W  ++ 
Sbjct: 367 LIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIA 400



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 21/299 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H   I  GL  ++ V ++L+DMY KC  + ++  +F  M  ++ V+ +A+L GY  
Sbjct: 29  GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88

Query: 65  TGDFESVIRIFREME------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR------- 111
            G +   +     M+        +  +   +L   A   AL  G  VH   IR       
Sbjct: 89  HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 148

Query: 112 --RSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
             +S   D V++ +AL+D+YAKCG + +A ++F  MP RN +TW+++I GF    R  +A
Sbjct: 149 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 208

Query: 169 LRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
             +F  M  +G       S    L AC+ +  +  G +  A + K   +   +   N ++
Sbjct: 209 FLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS-GVHADLTAGNSLL 267

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
            +  +AGL+++A  L +    + D+  +  L+        A  A  V KK+    ++PD
Sbjct: 268 SMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 325



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 12/188 (6%)

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           ++F   L+AC+ LA    G+ +H   I      D+ + +AL+D+Y KC C+  A  IF  
Sbjct: 11  YTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 70

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALR--IFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
           MP R+L+ WN+M++G+A +G    A+   +   M     +P+  + + +L   +  G + 
Sbjct: 71  MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 130

Query: 202 RGRKHFA---------SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           +G    A         +   + ++   +     ++D+  + G L  A  + +    R++ 
Sbjct: 131 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 190

Query: 253 SLWEVLLG 260
           + W  L+G
Sbjct: 191 T-WSALIG 197


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 211/333 (63%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QG ++HA++   G  G+V + ++LV++Y +CG + E+   F++M  K+ ++ + L+ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSG 521

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G  E  +++F  M++     ++F+F   L A A LA ++ GK++H + I+     +
Sbjct: 522 FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE 581

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ LY KCG  + A   F +M  RN ++WN++I+  +Q+GRG EAL +FD M +
Sbjct: 582 TEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKK 641

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+ V+FIGVL+ACSH+GL++ G  +F SM+ EY I+P+ +HY C++D+ GRAG L+
Sbjct: 642 EGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLD 701

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A+  IE      D+ +W  LL AC   +N  V E  AK ++EL+P    SYVLL N Y 
Sbjct: 702 RAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYA 761

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
              +W +  ++R +M+  GV+K PG+SWIE  +
Sbjct: 762 VTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKN 794



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 143/259 (55%), Gaps = 6/259 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+HAK +T GL    +V + L+D+Y K GLV  + RVF+++  +++VS  A+L GY Q G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             E  + ++R+M    +    +    VL +C        G+ +H Q  +   C ++ + +
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           A++ LY +CG    A ++F  MP R+ +T+N++ISG AQ G GE AL IF++M   G  P
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           D V+   +L+AC+ +G + +G +  + + K   I         ++DL  + G +E A  +
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKA-GISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 243 IENADCRHDSSLWEVLLGA 261
             ++D R +  LW ++L A
Sbjct: 302 FNSSD-RTNVVLWNLMLVA 319



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 148/263 (56%), Gaps = 6/263 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+  +  G   ++ V   L+DMY K G ++++ RV + + +K+ VS ++++ GY Q
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQ 423

Query: 65  TGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               +  +  F+EM++  ++   I     +  CAG+ A+R G ++H +        DV I
Sbjct: 424 HECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSI 483

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV+LYA+CG +  A   F +M +++ IT N ++SGFAQ+G  EEAL++F  M + G 
Sbjct: 484 WNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGV 543

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           K +  +F+  LSA +++  I +G++  A + K      + E  N ++ L G+ G  E+A+
Sbjct: 544 KHNVFTFVSALSASANLAEIKQGKQIHARVIKTGH-SFETEVGNALISLYGKCGSFEDAK 602

Query: 241 TLIENADCRHDSSLWEVLLGACT 263
                   R++ S W  ++ +C+
Sbjct: 603 MEFSEMSERNEVS-WNTIITSCS 624



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 5/247 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             QG+ +HA+    G C  + V ++++ +Y +CG    + RVF  M  +++V+ + L+ G
Sbjct: 159 FAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISG 218

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  E  + IF EM+      D  +   +L ACA L  L+ G ++H    +     D
Sbjct: 219 HAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSD 278

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            I+E +L+DLY KCG V+ A  IF      N++ WN M+  F Q     ++  +F  M  
Sbjct: 279 YIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQA 338

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+  ++  +L  C+    ID G +   S++ +   +  +     ++D+  + G LE
Sbjct: 339 AGIRPNQFTYPCILRTCTCTREIDLG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLE 397

Query: 238 EAETLIE 244
           +A  ++E
Sbjct: 398 KARRVLE 404



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 132/253 (52%), Gaps = 7/253 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G ++H+ +   G+  + ++E SL+D+Y KCG V+ +  +F+   + N V  + +L  
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q  D      +F +M+   +    F++  +LR C     + LG+++H   ++     D
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESD 379

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + +   L+D+Y+K G ++ A ++   +  +++++W SMI+G+ Q+   ++AL  F +M +
Sbjct: 380 MYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQK 439

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G  PD++     +S C+ +  + +G + H       Y     I  +N +V+L  R G +
Sbjct: 440 CGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSI--WNALVNLYARCGRI 497

Query: 237 EEAETLIENADCR 249
            EA +  E  + +
Sbjct: 498 REAFSSFEEMELK 510


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 135/327 (41%), Positives = 211/327 (64%), Gaps = 7/327 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSALLQGYCQT 65
           ++HA V+   L  +  + ++L+  YGKCG ++E  ++F +M + ++ VS ++++ GY   
Sbjct: 611 QIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHN 670

Query: 66  ----GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
                  + V  + ++ + +D F+F  +L ACA +A L  G EVH   IR     DV++ 
Sbjct: 671 ELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVG 730

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SALVD+Y+KCG +D+A + F  MP+RN+ +WNSMISG+A++G GE+AL++F  M   G  
Sbjct: 731 SALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQP 790

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PDHV+F+GVLSACSH+G ++ G +HF SM++ YR+ P++EH++CMVDLLGRAG L+E   
Sbjct: 791 PDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGD 850

Query: 242 LIENADCRHDSSLWEVLLGAC--TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
            I +   + +  +W  +LGAC     RN  +  R A+ ++EL+P   ++YVLL N+Y + 
Sbjct: 851 FINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASG 910

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWI 326
            +W D  K RT MK + VKK  G SW+
Sbjct: 911 EKWEDVAKARTAMKEAAVKKEAGCSWV 937



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 133/265 (50%), Gaps = 7/265 (2%)

Query: 3   KQGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++G+EVHA VI  GL  N V + + LV+MY K G + ++  VF+ M++K+SVS ++L+ G
Sbjct: 403 RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISG 462

Query: 62  Y----CQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                C     ES  R+ R       F+    L +CA L  + LG+++HC  ++     D
Sbjct: 463 LDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTD 522

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN-GRGEEALRIFDDMT 176
           V + +AL+ LYA+ GC     ++F  MP  + ++WNS+I   + +     +A++ F  M 
Sbjct: 523 VSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMM 582

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            GG     V+FI +LSA S + L +   +  A + K Y +       N ++   G+ G +
Sbjct: 583 RGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLK-YCLSDDTAIGNALLSCYGKCGEM 641

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
            E E +        D   W  ++  
Sbjct: 642 NECEKIFARMSETRDEVSWNSMISG 666



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 149/303 (49%), Gaps = 13/303 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++ A+V   G   ++ V S+LV  + + GL D++  +F++M  +N VS + L+ G  + 
Sbjct: 302 EQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQ 361

Query: 66  GDFESVIRIFREMEE---IDLFSFGIVLRACAGLAAL----RLGKEVHCQYIRRSGCKD- 117
              E+  ++F EM++   I+  S+ ++L A +  + L    R G+EVH   IR +G  D 
Sbjct: 362 KQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIR-TGLNDN 420

Query: 118 -VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V I + LV++YAK G +  A  +F  M  ++ ++WNS+ISG  QN   E+A   F  M 
Sbjct: 421 KVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMR 480

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G+ P + + I  LS+C+ +G I  G +      K   +   +   N ++ L    G  
Sbjct: 481 RTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLK-LGLDTDVSVSNALLALYAETGCF 539

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            E   +       +D   W  ++GA +    A V++ V   +  ++    LS V   N+ 
Sbjct: 540 TECLKVFSLMP-EYDQVSWNSVIGALSD-SEASVSQAVKYFLQMMRGGWGLSRVTFINIL 597

Query: 297 RAV 299
            AV
Sbjct: 598 SAV 600



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 163/333 (48%), Gaps = 30/333 (9%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           ++ +E+H + I  G  GN+ + ++L+++Y + G +  + ++FD+M  +N V+ + L+ GY
Sbjct: 88  EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 147

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRAC--AGLAALRLGKEVHCQYIRRSGCK 116
            Q G  +     FR+M         ++FG  LRAC  +G +  +LG ++H    +     
Sbjct: 148 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGS 207

Query: 117 DVIIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           DV++ + L+ +Y  C    + A  +F  + +RN I+WNS+IS +++ G    A  +F  M
Sbjct: 208 DVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSM 267

Query: 176 TEGGT----KPDHVSFIGVL-SACSHMGLIDRG----RKHFASMTKEYRIKPKIEHYNCM 226
            + G     KP+  +F  ++ +ACS    +D G     +  A + K   ++  +   + +
Sbjct: 268 QKEGLGFSFKPNEYTFGSLITTACSS---VDFGLCVLEQMLARVEKSGFLQ-DLYVSSAL 323

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286
           V    R GL ++A+ + E    R+  S+  +++G     +    A +V  ++ +L     
Sbjct: 324 VSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQ-KQGEAAAKVFHEMKDLVGINS 382

Query: 287 LSYVLLDNVY---------RAVGRWNDAFKIRT 310
            SYV+L + +         R  GR   A  IRT
Sbjct: 383 DSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRT 415



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 151/310 (48%), Gaps = 9/310 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H   + LGL  +V V ++L+ +Y + G   E  +VF  M + + VS ++++     
Sbjct: 507 GEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSD 566

Query: 65  T-GDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           +       ++ F +M      +   +F  +L A + L+   +  ++H   ++     D  
Sbjct: 567 SEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTA 626

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           I +AL+  Y KCG ++   +IF +M   R+ ++WNSMISG+  N    +A+ +   M + 
Sbjct: 627 IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQK 686

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G + D  +F  +LSAC+ +  ++RG +  A   +   ++  +   + +VD+  + G ++ 
Sbjct: 687 GQRLDSFTFATILSACASVATLERGMEVHACGIRAC-LESDVVVGSALVDMYSKCGRIDY 745

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM-ELKPDCHLSYVLLDNVYR 297
           A    E    R+  S W  ++       +   A ++  ++M + +P  H+++V + +   
Sbjct: 746 ASRFFELMPLRNVYS-WNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACS 804

Query: 298 AVGRWNDAFK 307
            VG   + F+
Sbjct: 805 HVGFVEEGFE 814



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 9/177 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G EVHA  I   L  +VVV S+LVDMY KCG +D + R F+ M  +N  S ++++ G
Sbjct: 708 LERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISG 767

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  E  +++F  M    +  D  +F  VL AC+ +  +  G E H + +       
Sbjct: 768 YARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFE-HFKSMSEVYRLS 826

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQ-NGRGEEALR 170
             +E  S +VDL  + G +D        MP++ N++ W +++    + NGR  E  R
Sbjct: 827 PRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGR 883


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 135/327 (41%), Positives = 211/327 (64%), Gaps = 7/327 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSALLQGYCQT 65
           ++HA V+   L  +  + ++L+  YGKCG ++E  ++F +M + ++ VS ++++ GY   
Sbjct: 459 QIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHN 518

Query: 66  ----GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
                  + V  + ++ + +D F+F  +L ACA +A L  G EVH   IR     DV++ 
Sbjct: 519 ELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVG 578

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SALVD+Y+KCG +D+A + F  MP+RN+ +WNSMISG+A++G GE+AL++F  M   G  
Sbjct: 579 SALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQP 638

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PDHV+F+GVLSACSH+G ++ G +HF SM++ YR+ P++EH++CMVDLLGRAG L+E   
Sbjct: 639 PDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGD 698

Query: 242 LIENADCRHDSSLWEVLLGAC--TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
            I +   + +  +W  +LGAC     RN  +  R A+ ++EL+P   ++YVLL N+Y + 
Sbjct: 699 FINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASG 758

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWI 326
            +W D  K RT MK + VKK  G SW+
Sbjct: 759 EKWEDVAKARTAMKEAAVKKEAGCSWV 785



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 160/344 (46%), Gaps = 41/344 (11%)

Query: 3   KQGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++G+EVHA VI  GL  N V + + LV+MY K G + ++  VF+ M++K+SVS ++L+ G
Sbjct: 321 RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISG 380

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV-------------------------------- 89
             Q    E    +F  M E D  S+  V                                
Sbjct: 381 LDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVT 440

Query: 90  ----LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
               L A + L+   +  ++H   ++     D  I +AL+  Y KCG ++   +IF +M 
Sbjct: 441 FINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMS 500

Query: 146 -VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
             R+ ++WNSMISG+  N    +A+ +   M + G + D  +F  +LSAC+ +  ++RG 
Sbjct: 501 ETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGM 560

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           +  A   +   ++  +   + +VD+  + G ++ A    E    R+  S W  ++     
Sbjct: 561 EVHACGIRAC-LESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYS-WNSMISGYAR 618

Query: 265 FRNAHVAERVAKKIM-ELKPDCHLSYVLLDNVYRAVGRWNDAFK 307
             +   A ++  ++M + +P  H+++V + +    VG   + F+
Sbjct: 619 HGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFE 662



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 134/269 (49%), Gaps = 18/269 (6%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           ++ +E+H + I  G  GN+ + ++L+++Y + G +  + ++FD+M  +N V+ + L+ GY
Sbjct: 116 EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 175

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRAC--AGLAALRLGKEVHCQYIRRSGCK 116
            Q G  +     FR+M         ++FG  LRAC  +G +  +LG ++H    +     
Sbjct: 176 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGS 235

Query: 117 DVIIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           DV++ + L+ +Y  C    + A  +F  + +RN I+WNS+IS +++ G    A  +F  M
Sbjct: 236 DVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSM 295

Query: 176 TEGGT----KP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
            + G     KP D  S   VL          +GR+  A + +      K+   N +V++ 
Sbjct: 296 QKEGLGFSFKPNDAFSEFSVLEEGRR-----KGREVHAHVIRTGLNDNKVAIGNGLVNMY 350

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLL 259
            ++G + +A ++ E      DS  W  L+
Sbjct: 351 AKSGAIADACSVFE-LMVEKDSVSWNSLI 378



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 132/297 (44%), Gaps = 43/297 (14%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKC-GLVDESHRVFDKMLKKNSVSSSALLQG 61
           K G ++H  +       +VVV + L+ MYG C    +++  VFD +  +NS+S ++++  
Sbjct: 219 KLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISV 278

Query: 62  YCQTGDFESVIRIFREMEEIDL-FSFGIVLRACAGLAAL----RLGKEVHCQYIRRSGCK 116
           Y + GD  S   +F  M++  L FSF     A +  + L    R G+EVH   IR +G  
Sbjct: 279 YSRRGDAVSAYDLFSSMQKEGLGFSFKPN-DAFSEFSVLEEGRRKGREVHAHVIR-TGLN 336

Query: 117 D--VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
           D  V I + LV++YAK G +  A  +F  M  ++ ++WNS+ISG  QN   E+A  +F  
Sbjct: 337 DNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSL 396

Query: 175 MTE--------------------------------GGTKPDHVSFIGVLSACSHMGLIDR 202
           M E                                GG     V+FI +LSA S + L + 
Sbjct: 397 MPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEV 456

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             +  A + K Y +       N ++   G+ G + E E +        D   W  ++
Sbjct: 457 SHQIHALVLK-YCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMI 512



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 9/177 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G EVHA  I   L  +VVV S+LVDMY KCG +D + R F+ M  +N  S ++++ G
Sbjct: 556 LERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISG 615

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  E  +++F  M    +  D  +F  VL AC+ +  +  G E H + +       
Sbjct: 616 YARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFE-HFKSMSEVYRLS 674

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQ-NGRGEEALR 170
             +E  S +VDL  + G +D        MP++ N++ W +++    + NGR  E  R
Sbjct: 675 PRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGR 731


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 212/336 (63%), Gaps = 6/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   +++H  +I  GL  +V V S+L+D+Y K   +D +  VFD+M  ++ V  ++++ G
Sbjct: 168 LPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGG 227

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q  D    + +F+ M+      D  +   VLRAC GLA L LG++VH   ++    +D
Sbjct: 228 FAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFD--QD 285

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +I+ +AL+D+Y KCG ++ A+  F +M  +++I+W++M++G AQNG   +AL +F+ M E
Sbjct: 286 LILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKE 345

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G++P++++ +GVL ACSH GL+++G  +F SM K + + P  EHY C++DLLGRAG L+
Sbjct: 346 SGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLD 405

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI   +C  DS  W  LLGAC   RN  +A   AKKI+EL+P+   +Y+LL N+Y 
Sbjct: 406 EAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYA 465

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              RW D  ++R  M   G++K PG SWIE + +++
Sbjct: 466 NTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIH 501



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 137/243 (56%), Gaps = 9/243 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++GK VH  +   G    + V ++L++MY K  L++E+  +FD+M ++N VS + ++  
Sbjct: 71  VQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISA 130

Query: 62  YCQTGD---FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y    +    + +I +FRE    ++F++  VLRAC GL  LR   ++HC  I+     DV
Sbjct: 131 YSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR---QLHCGIIKTGLESDV 187

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + SAL+D+Y+K   +D A  +F +MP R+L+ WNS+I GFAQN  G EAL +F  M   
Sbjct: 188 FVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRA 247

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G   D  +   VL AC+ + L++ GR+    + K       +   N ++D+  + G LE+
Sbjct: 248 GFLADQATLTSVLRACTGLALLELGRQVHVHVLK---FDQDLILNNALIDMYCKCGSLED 304

Query: 239 AET 241
           A +
Sbjct: 305 ANS 307



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 102/230 (44%), Gaps = 26/230 (11%)

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCK 116
            +C   D    +R    ME   +F+  I    +++ C+   A++ GK VH     +    
Sbjct: 29  NFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEP 88

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            + + + L+++Y K   ++ A  +F +MP RN+++W +MIS ++ N   ++AL+    M 
Sbjct: 89  KMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMF 147

Query: 177 EGGTKPDHVSFIGVLSACS--------HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
             G +P+  ++  VL AC         H G+I  G +     +  +     I+ Y+   D
Sbjct: 148 REGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLE-----SDVFVRSALIDVYSKWSD 202

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           L    G+ +E  T         D  +W  ++G      + + A  + K++
Sbjct: 203 LDNALGVFDEMPT--------RDLVVWNSIIGGFAQNSDGNEALNLFKRM 244


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 211/333 (63%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA +   GL  ++   +SL+ MY K GL+D++  +FD+M+ K++VS SAL+ GY Q
Sbjct: 354 GKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQ 413

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +   R+FR+M+    + D+ +   ++ AC+ LAAL+ GK  H   I R    +  I
Sbjct: 414 NGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSI 473

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+YAKCG +D + QIF  MP R++++WN+MI+G+  +G G+EA  +F DM     
Sbjct: 474 CNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQAC 533

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD V+FI ++SACSH GL+  G++ F  M  +Y I P++EHY  MVDLL R G L+EA 
Sbjct: 534 EPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAY 593

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I+    + D  +W  LLGAC   +N  + ++V+  I +L P+   ++VLL N++ A G
Sbjct: 594 QFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAG 653

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           R+++A ++R + K  G KK PG SWIE N  L+
Sbjct: 654 RFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLH 686



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 141/270 (52%), Gaps = 15/270 (5%)

Query: 2   LKQGKEVHAKVITLGLCG------NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS 55
           L QG+ VHA   ++  C        V+V ++L+DMY KCG +  + RVF+ M  +N V+ 
Sbjct: 245 LSQGRAVHA--YSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTW 302

Query: 56  SALLQGYCQTGDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYI 110
           SAL+ G+   G       +F++M    L      S    LRACA L+ L LGK++H    
Sbjct: 303 SALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLA 362

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
           +     D+   ++L+ +YAK G +D A  +F QM V++ +++++++SG+ QNG+ +EA R
Sbjct: 363 KSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFR 422

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F  M     +PD  + + ++ ACSH+  +  G+    S+     I  +    N ++D+ 
Sbjct: 423 VFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASETSICNALIDMY 481

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            + G ++ +  + +    R D   W  ++ 
Sbjct: 482 AKCGRIDLSRQIFDVMPAR-DIVSWNTMIA 510



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 146/295 (49%), Gaps = 16/295 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  + VH      GL  ++ V ++LVD+Y KC     +  VF +M  ++ V+ +A+L G
Sbjct: 145 LRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAG 204

Query: 62  YCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD- 117
           Y   G +   I     M++    +  +   +L   A   AL  G+ VH   +R     D 
Sbjct: 205 YALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDH 264

Query: 118 ---VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
              V++ +AL+D+YAKCG + +A ++F  M VRN +TW++++ GF   GR  EA  +F D
Sbjct: 265 KDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKD 324

Query: 175 MTEGG---TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           M   G     P  V+    L AC+++  +  G++  A + K   +   +   N ++ +  
Sbjct: 325 MLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHALLAKS-GLHTDLTAGNSLLSMYA 381

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
           +AGL+++A TL +    + D+  +  L+        A  A RV +K+    ++PD
Sbjct: 382 KAGLIDQATTLFDQMVVK-DTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPD 435



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 9/234 (3%)

Query: 34  CGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD----FESVIRIFREMEEIDLFSFGIV 89
           CG +  +  +FD++        +AL++ Y   G             R + + + ++F  V
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L+AC+ L  LR  + VHC   R     D+ + +ALVD+YAKC     A  +F +MP R++
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           + WN+M++G+A +G+  + +     M +    P+  + + +L   +  G + +GR   A 
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 210 MTKEYRI---KPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             +   +   K  +     ++D+  + G L  A  + E    R++ + W  L+G
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVT-WSALVG 307



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK  H  VI  G+     + ++L+DMY KCG +D S ++FD M  ++ VS + ++ G
Sbjct: 452 LQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAG 511

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +    +F +M+    E D  +F  ++ AC+    +  GK        + G   
Sbjct: 512 YGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITP 571

Query: 118 VIIES-ALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            +     +VDL A+ G +D A+Q    MP++ ++  W +++
Sbjct: 572 RMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALL 612


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/320 (39%), Positives = 208/320 (65%), Gaps = 4/320 (1%)

Query: 18  CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFRE 77
           C N+   ++++  YG+ G + ++ + FD M +++ VS +A++ GY Q+G +E  + +F E
Sbjct: 325 CRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVE 384

Query: 78  M----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133
           +    E ++  +FG  L  CA +AAL LGK++H Q ++        + +AL+ +Y KCG 
Sbjct: 385 IKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGS 444

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           +D A+  F  +  +++++WN+M++G+A++G G +AL +F+ M   G KPD ++ +GVLSA
Sbjct: 445 IDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSA 504

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           CSH GL+DRG ++F SMTK+Y + P  +HY CM+DLLGRAG LEEA+ LI N   +  ++
Sbjct: 505 CSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAA 564

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
            W  LLGA     N  + E+ A+ + +++P     YVLL N+Y A GRW DA K+R+ M+
Sbjct: 565 SWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMR 624

Query: 314 YSGVKKMPGKSWIEANSKLN 333
             GV+K+PG SW+E  +K++
Sbjct: 625 DIGVQKVPGYSWVEVQNKIH 644



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 125/266 (46%), Gaps = 19/266 (7%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  +SL+  Y + G VDE+  VFD M +KNS+S + LL  Y   G  E    +F    
Sbjct: 141 DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKS 200

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYI-RRSGCKDVIIESALVDLYAKCGCVDFAH 138
           + DL S+      C     +R  K    +++  +   +D I  + ++  YA+ G +  A 
Sbjct: 201 DWDLISWN-----CLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQAR 255

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F + P R++ TW +M+SG+ QNG  +EA   FD+M E     + VS+  +++      
Sbjct: 256 RLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPE----KNEVSYNAMIAGYVQTK 311

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
            +D  R+ F SM         I  +N M+   G+ G + +A    +    R D   W  +
Sbjct: 312 KMDIARELFESMPCR-----NISSWNTMITGYGQIGDIAQARKFFDMMPQR-DCVSWAAI 365

Query: 259 LGACTTFRNAHVAERVAKKIMELKPD 284
           +      ++ H  E +    +E+K D
Sbjct: 366 IAGYA--QSGHYEEAL-NMFVEIKQD 388



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 22/236 (9%)

Query: 28  VDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFG 87
           +  + + G  D +  VF+ M +++SVS +A++ GY +   F     +F +M E DLFS+ 
Sbjct: 56  ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWN 115

Query: 88  IVL----RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           ++L    R C      RLG       +     KDV+  ++L+  YA+ G VD A ++F  
Sbjct: 116 VMLTGYVRNC------RLGDARRLFDLMPE--KDVVSWNSLLSGYAQNGYVDEAREVFDN 167

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP +N I+WN +++ +  NGR EEA  +F    E  +  D +S+  ++        +   
Sbjct: 168 MPEKNSISWNGLLAAYVHNGRIEEACLLF----ESKSDWDLISWNCLMGGFVRKKKLGDA 223

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           R  F  M     I      +N M+    + G L +A  L + +  R D   W  ++
Sbjct: 224 RWLFDKMPVRDAIS-----WNTMISGYAQGGGLSQARRLFDESPTR-DVFTWTAMV 273



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 140/324 (43%), Gaps = 44/324 (13%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI 81
           V  ++++  Y +    + +  +FD+M +++  S + +L GY +        R+F  M E 
Sbjct: 81  VSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK 140

Query: 82  DLFSFGIVLRACAGLAALRLGKEVH---------------------------CQYIRRSG 114
           D+ S+  +L   A    +   +EV                            C       
Sbjct: 141 DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKS 200

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D+I  + L+  + +   +  A  +F +MPVR+ I+WN+MISG+AQ G   +A R+FD 
Sbjct: 201 DWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFD- 259

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
             E  T+ D  ++  ++S     G++D  +  F  M ++  +      YN M+    +  
Sbjct: 260 --ESPTR-DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTK 311

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP--DCHLSYVLL 292
            ++ A  L E+  CR+ SS W  ++          +A+  A+K  ++ P  DC +S+  +
Sbjct: 312 KMDIARELFESMPCRNISS-WNTMITGYGQI--GDIAQ--ARKFFDMMPQRDC-VSWAAI 365

Query: 293 DNVYRAVGRWNDAFKIRTLMKYSG 316
              Y   G + +A  +   +K  G
Sbjct: 366 IAGYAQSGHYEEALNMFVEIKQDG 389



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H + + +G      V ++L+ MY KCG +DE++  F+ + +K+ VS + +L G
Sbjct: 410 LELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAG 469

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G     + +F  M+    + D  +   VL AC+    L  G E      +  G   
Sbjct: 470 YARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYG--- 526

Query: 118 VIIESA----LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGE 166
           VI  S     ++DL  + G ++ A  +   MP +    +W +++     +G  E
Sbjct: 527 VIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTE 580



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D++  +  +  + + G  D A  +F  MP R+ +++N+MISG+ +N +   A  +FD M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E      +V   G +  C     +   R+ F  M ++      +  +N ++    + G +
Sbjct: 108 ERDLFSWNVMLTGYVRNCR----LGDARRLFDLMPEK-----DVVSWNSLLSGYAQNGYV 158

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           +EA  + +N   ++  S W  LL A
Sbjct: 159 DEAREVFDNMPEKNSIS-WNGLLAA 182


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 221/365 (60%), Gaps = 35/365 (9%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMY-------------------------------G 32
           +G ++H +VI LGL  +  +++++++MY                                
Sbjct: 115 EGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLA 174

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGI 88
           KCG +D+S R+FDKML +N+VS ++++ GY + G F   + +F  M+E  +    F+   
Sbjct: 175 KCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVS 234

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L ACA L ALR G+ +H   ++ +   + I+ +A++D+Y+KCG +D A Q+F   P + 
Sbjct: 235 LLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKG 294

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           L  WNS+I G A +GRG EA+R+F  +     KPDHVSFIGVL+AC+H G++DR + +F 
Sbjct: 295 LSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFL 354

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            M++ Y+I+P I+HY+CMVD+LGRAGLLEEAE LI++     D+ +W  LL +C  + N 
Sbjct: 355 LMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNI 414

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            +A++ AK++ EL P+   S++LL NVY A   + +A + R  +K   + K PG S IE 
Sbjct: 415 EMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEV 474

Query: 329 NSKLN 333
           N +++
Sbjct: 475 NGEVH 479



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 149/329 (45%), Gaps = 43/329 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM-YGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +K  +++HA++I  GL  + +  S ++       G ++ ++ VF ++   N    + +++
Sbjct: 9   MKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIR 68

Query: 61  GYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           G+ Q+    + I +F +M       +    ++  V +A A L     G ++H + I+   
Sbjct: 69  GFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGL 128

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM------------------- 155
             D  I++ ++++Y  CG +  A +IF      +++TWN+M                   
Sbjct: 129 ENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDK 188

Query: 156 ------------ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
                       ISG+ + GR  EA+ +F  M E G KP   + + +L+AC+ +G + +G
Sbjct: 189 MLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQG 248

Query: 204 R-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
              H   +   + +   +     ++D+  + G +++A  + ++A  +  S    ++LG  
Sbjct: 249 EWIHDYIVKNNFALNSIV--ITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLA 306

Query: 263 TTFRNAHVAERVAK-KIMELKPDCHLSYV 290
            + R        +K +   LKPD H+S++
Sbjct: 307 MSGRGNEAVRLFSKLESSNLKPD-HVSFI 334



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+ +H  ++      N +V ++++DMY KCG +D++ +VF    KK     ++L+ G
Sbjct: 245 LRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILG 304

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
              +G     +R+F ++E  +L     SF  VL AC     +   K+           + 
Sbjct: 305 LAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEP 364

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEA 168
            I   S +VD+  + G ++ A ++   MPV  + I W S++S   + G  E A
Sbjct: 365 SIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMA 417


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/320 (39%), Positives = 208/320 (65%), Gaps = 4/320 (1%)

Query: 18  CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFRE 77
           C N+   ++++  YG+ G + ++ + FD M +++ VS +A++ GY Q+G +E  + +F E
Sbjct: 325 CRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVE 384

Query: 78  M----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133
           +    E ++  +FG  L  CA +AAL LGK++H Q ++        + +AL+ +Y KCG 
Sbjct: 385 IKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGS 444

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           +D A+  F  +  +++++WN+M++G+A++G G +AL +F+ M   G KPD ++ +GVLSA
Sbjct: 445 IDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSA 504

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           CSH GL+DRG ++F SMTK+Y + P  +HY CM+DLLGRAG LEEA+ LI N   +  ++
Sbjct: 505 CSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAA 564

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
            W  LLGA     N  + E+ A+ + +++P     YVLL N+Y A GRW DA K+R+ M+
Sbjct: 565 SWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMR 624

Query: 314 YSGVKKMPGKSWIEANSKLN 333
             GV+K+PG SW+E  +K++
Sbjct: 625 DIGVQKVPGYSWVEVQNKIH 644



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 125/266 (46%), Gaps = 19/266 (7%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  +SL+  Y + G VDE+  VFD M +KNS+S + LL  Y   G  E    +F    
Sbjct: 141 DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKS 200

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYI-RRSGCKDVIIESALVDLYAKCGCVDFAH 138
           + DL S+      C     +R  K    +++  +   +D I  + ++  YA+ G +  A 
Sbjct: 201 DWDLISWN-----CLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQAR 255

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F + P R++ TW +M+SG+ QNG  +EA   FD+M E     + VS+  +++      
Sbjct: 256 RLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPE----KNEVSYNAMIAGYVQTK 311

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
            +D  R+ F SM         I  +N M+   G+ G + +A    +    R D   W  +
Sbjct: 312 KMDIARELFESMPCR-----NISSWNTMITGYGQIGDIAQARKFFDMMPQR-DCVSWAAI 365

Query: 259 LGACTTFRNAHVAERVAKKIMELKPD 284
           +      ++ H  E +    +E+K D
Sbjct: 366 IAGYA--QSGHYEEAL-NMFVEIKQD 388



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 22/236 (9%)

Query: 28  VDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFG 87
           +  + + G  D +  VF+ M +++SVS +A++ GY +   F     +F +M E DLFS+ 
Sbjct: 56  ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWN 115

Query: 88  IVL----RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           ++L    R C      RLG       +     KDV+  ++L+  YA+ G VD A ++F  
Sbjct: 116 VMLTGYVRNC------RLGDARRLFDLMPE--KDVVSWNSLLSGYAQNGYVDEAREVFDN 167

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP +N I+WN +++ +  NGR EEA  +F+  ++     D +S+  ++        +   
Sbjct: 168 MPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDW----DLISWNCLMGGFVRKKKLGDA 223

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           R  F  M     I      +N M+    + G L +A  L + +  R D   W  ++
Sbjct: 224 RWLFDKMPVRDAIS-----WNTMISGYAQGGGLSQARRLFDESPTR-DVFTWTAMV 273



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 140/324 (43%), Gaps = 44/324 (13%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI 81
           V  ++++  Y +    + +  +FD+M +++  S + +L GY +        R+F  M E 
Sbjct: 81  VSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK 140

Query: 82  DLFSFGIVLRACAGLAALRLGKEVH---------------------------CQYIRRSG 114
           D+ S+  +L   A    +   +EV                            C       
Sbjct: 141 DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKS 200

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D+I  + L+  + +   +  A  +F +MPVR+ I+WN+MISG+AQ G   +A R+FD 
Sbjct: 201 DWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFD- 259

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
             E  T+ D  ++  ++S     G++D  +  F  M ++  +      YN M+    +  
Sbjct: 260 --ESPTR-DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTK 311

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP--DCHLSYVLL 292
            ++ A  L E+  CR+ SS W  ++          +A+  A+K  ++ P  DC +S+  +
Sbjct: 312 KMDIARELFESMPCRNISS-WNTMITGYGQI--GDIAQ--ARKFFDMMPQRDC-VSWAAI 365

Query: 293 DNVYRAVGRWNDAFKIRTLMKYSG 316
              Y   G + +A  +   +K  G
Sbjct: 366 IAGYAQSGHYEEALNMFVEIKQDG 389



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 38/138 (27%)

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           + GL+D G ++F  M +EY + P  +HY CM+DLLGR   LEE                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---------------- 819

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGA     N  + E+ A+   ++ P                   N      + M+  
Sbjct: 820 -ALLGASRIHGNTELGEKAAQMFFKMGPQ------------------NSGI---SKMRDV 857

Query: 316 GVKKMPGKSWIEANSKLN 333
           GV+K+PG SW E  +K++
Sbjct: 858 GVQKVPGYSWFEVQNKIH 875



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H + + +G      V ++L+ MY KCG +DE++  F+ + +K+ VS + +L G
Sbjct: 410 LELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAG 469

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G     + +F  M+    + D  +   VL AC+    L  G E      +  G   
Sbjct: 470 YARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYG--- 526

Query: 118 VIIESA----LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGE 166
           VI  S     ++DL  + G ++ A  +   MP +    +W +++     +G  E
Sbjct: 527 VIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTE 580



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D++  +  +  + + G  D A  +F  MP R+ +++N+MISG+ +N +   A  +FD M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E      +V   G +  C     +   R+ F  M ++      +  +N ++    + G +
Sbjct: 108 ERDLFSWNVMLTGYVRNCR----LGDARRLFDLMPEK-----DVVSWNSLLSGYAQNGYV 158

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           +EA  + +N   ++  S W  LL A
Sbjct: 159 DEAREVFDNMPEKNSIS-WNGLLAA 182


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 210/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G E+H ++I  GL  +  V  +L+DMY KCG+++E+ ++ D++ ++  VS +A++ G
Sbjct: 495 LNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAG 554

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +      E     F EM ++    D F++ IVL ACA LA++ LGK++H Q I+     D
Sbjct: 555 FTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSD 614

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I S LVD+Y+KCG +  +  +F + P ++ +TWN+MI G+AQ+G GEEAL  F+ M  
Sbjct: 615 VYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQL 674

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +P+H +F+ +L AC+HMG ID+G  +F +M  EY ++P+IEHY+CM+D++GR+G + 
Sbjct: 675 ENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRIS 734

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI+      D+ +W  LL  C    N  +AE+    I++L+P+   + +LL N+Y 
Sbjct: 735 EALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPEDSSACILLSNIYA 794

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G W    ++R +M+Y+ +KK PG SWIE   +++
Sbjct: 795 DAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKDEVH 830



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 149/262 (56%), Gaps = 8/262 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH  ++ +G   +VV  S+L+DMY KC  +D+S ++F ++  KN V  SA++ G  Q
Sbjct: 195 GIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQ 254

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             +    + +F+EM+++ +      +  V R+CAGL+AL++G ++H   ++     D+ +
Sbjct: 255 NDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITV 314

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A +D+YAKCG +  A +IF  +P  +L  +N++I G  +N +G EAL+ F  + + G 
Sbjct: 315 GTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGL 374

Query: 181 KPDHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             + +S  G  SAC+ + G +D  + H  S++ +  ++  I   N ++D+ G+   L EA
Sbjct: 375 GFNEISLSGAFSACASIKGDLDGRQLH--SLSVKSTLRSNICVANSILDMYGKCEALSEA 432

Query: 240 ETLIENADCRHDSSLWEVLLGA 261
             + +  + R D+  W  ++ A
Sbjct: 433 CCMFDEME-RRDAVSWNAVIAA 453



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 146/259 (56%), Gaps = 6/259 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+  +   L  N+ V +S++DMYGKC  + E+  +FD+M ++++VS +A++  + Q
Sbjct: 397 GRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQ 456

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G+ E  + +F  M     E D F++G VL+AC+   AL  G E+H + I+     D  +
Sbjct: 457 NGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFV 516

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
             AL+D+Y KCG ++ A +I  ++  + +++WN++I+GF      E+A   F +M +   
Sbjct: 517 GGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSV 576

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD+ ++  VL AC+++  +  G++    + K   +   +   + +VD+  + G ++++ 
Sbjct: 577 KPDNFTYAIVLDACANLASVGLGKQIHGQIIK-LELHSDVYITSTLVDMYSKCGNMQDSA 635

Query: 241 TLIENADCRHDSSLWEVLL 259
            + E A  + D   W  ++
Sbjct: 636 LVFEKAPNK-DFVTWNAMI 653



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 144/298 (48%), Gaps = 38/298 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-------------- 47
           LK GK+ HA++I  G   +V + + L+ MY +C  ++ +++VF+KM              
Sbjct: 59  LKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISG 118

Query: 48  -----------------LKKNSVSSSALLQGYCQTGDFESVIRIFREM---EEI--DLFS 85
                             K++ VS +++L G+ Q G+    I +F +M   EE+  D  +
Sbjct: 119 YADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTT 178

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           F +VL+AC+ L    LG +VH   +R    KDV+  SAL+D+YAKC  +D + +IF ++P
Sbjct: 179 FAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIP 238

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           V+N + W+++I+G  QN      L +F +M + G       +  V  +C+ +  +  G +
Sbjct: 239 VKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQ 298

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
             A   K       I      +D+  + G L +A+ +  N+  +H    +  ++  C 
Sbjct: 299 LHAHALK-CDFGSDITVGTATLDMYAKCGSLADAQRIF-NSLPKHSLQCYNAIIVGCV 354



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 148/300 (49%), Gaps = 12/300 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G ++HA  +      ++ V ++ +DMY KCG + ++ R+F+ + K +    +A++ G
Sbjct: 293 LKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVG 352

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             +       ++ F+ + +  L     S      ACA +     G+++H   ++ +   +
Sbjct: 353 CVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSN 412

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++++D+Y KC  +  A  +F +M  R+ ++WN++I+   QNG  EE L +F  M  
Sbjct: 413 ICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLR 472

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGL 235
              +PD  ++  VL ACS    ++ G +    + K       ++ +    ++D+  + G+
Sbjct: 473 LRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKS---GLGLDSFVGGALIDMYCKCGM 529

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPDCHLSYVLLD 293
           +EEA+ + +  + +   S W  ++   T  +++  A     ++  M +KPD     ++LD
Sbjct: 530 IEEAKKIHDRIEQQTMVS-WNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLD 588



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 51/246 (20%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +F  +++ C+   +L+ GK+ H + I      DV I + L+ +Y +C  +++A+++F +M
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKM 104

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG- 203
             R++I++N+MISG+A  G    A   F D      K D VS+  +LS     G +  G 
Sbjct: 105 SQRDVISYNTMISGYADAGEMNLANEFFYDT----PKRDVVSWNSMLS-----GFLQNGE 155

Query: 204 -RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
            RK                     +D+    G  EE            D + + V+L AC
Sbjct: 156 CRKS--------------------IDVFLDMGRSEEV---------GFDQTTFAVVLKAC 186

Query: 263 TTFRNAHVAERVAKKI--MELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
           +   +  +  +V   I  M    D      LLD +Y    R +D+ KI          ++
Sbjct: 187 SVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLD-MYAKCKRLDDSLKI--------FSEI 237

Query: 321 PGKSWI 326
           P K+W+
Sbjct: 238 PVKNWV 243


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 141/332 (42%), Positives = 204/332 (61%), Gaps = 5/332 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           KEVH+  I  GL  ++ V ++LV MY KCG    + +VFD M+++N  + + ++ G  Q 
Sbjct: 456 KEVHSYAIDAGLV-DLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQH 514

Query: 66  G----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G     F   +++ RE    D  ++  +L ACA   AL   KEVH   +      D+ + 
Sbjct: 515 GCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVG 574

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALV +YAKCG VD A ++F  M  R++ +W  MI G AQ+GRG +AL +F  M   G K
Sbjct: 575 NALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFK 634

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+  SF+ VLSACSH GL+D GR+ F S+T++Y I+P +EHY CMVDLLGRAG LEEA+ 
Sbjct: 635 PNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKH 694

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
            I N       + W  LLGAC T+ N  +AE  AK+ ++LKP    +YVLL N+Y A G 
Sbjct: 695 FILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGN 754

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           W     +R++M+  G++K PG+SWIE +++++
Sbjct: 755 WEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIH 786



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 161/314 (51%), Gaps = 21/314 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK++HA +I  G   +V VE++LV+MY KCG +D++  +FDKM+++N +S + ++ G
Sbjct: 46  LKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGG 105

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  +     F +M+      + +++  +L A A   AL   KEVH   +      D
Sbjct: 106 LAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALD 165

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV +YAK G +D A  +F  M  R++ +W  MI G AQ+GRG+EA  +F  M  
Sbjct: 166 LRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMER 225

Query: 178 GGTKPDHVSFIGVL--SACSHMGLIDRGR---KHF--ASMTKEYRIKPKIEHYNCMVDLL 230
           GG  P+  +++ +L  SA +  G ++  +   KH   A    + R+       N ++ + 
Sbjct: 226 GGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVG------NALIHMY 279

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLS 288
            + G +++A  L+ +  C  D   W  ++G        H A  +  K+ +    PD   +
Sbjct: 280 AKCGSIDDAR-LVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDS-TT 337

Query: 289 YVLLDNVYRAVGRW 302
           Y+ L N + + G W
Sbjct: 338 YLSLLNTHVSTGAW 351



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 101/192 (52%), Gaps = 4/192 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           KEVH      G   ++ V ++L+ MY KCG +D++  VFD M  ++ +S +A++ G  Q 
Sbjct: 254 KEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQN 313

Query: 66  GDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G       IF +M++     D  ++  +L       A    KEVH   +      D+ + 
Sbjct: 314 GCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVG 373

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SA V +Y +CG +D A  IF ++ VRN+ TWN+MI G AQ   G EAL +F  M   G  
Sbjct: 374 SAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFF 433

Query: 182 PDHVSFIGVLSA 193
           PD  +F+ +LSA
Sbjct: 434 PDATTFVNILSA 445



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 113/209 (54%), Gaps = 8/209 (3%)

Query: 58  LLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           ++ GY + G  E  ++++ +M     + +  ++  +L+AC    +L+ GK++H   I+  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              DV +E+ALV++Y KCG +D A  IF +M  RN+I+W  MI G A  GRG+EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGR 232
            M   G  P+  +++ +L+A +  G ++  ++ H  ++     +  ++   N +V +  +
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVG--NALVHMYAK 178

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +G +++A  + +    R D   W V++G 
Sbjct: 179 SGSIDDARVVFDGMVER-DIFSWTVMIGG 206


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 141/339 (41%), Positives = 209/339 (61%), Gaps = 5/339 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK  K VH   +  GL  +V V ++LV MY K G +D++  VFD+M  ++ VS + ++  
Sbjct: 246 LKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGA 305

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + + G       +F +M+    + D   F  +L ACA   AL   K++H   +      D
Sbjct: 306 FAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVD 365

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +ALV +Y+K G +D A  +F +M VRN+++WN+MISG AQ+G G++AL +F  MT 
Sbjct: 366 VRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTA 425

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+F+ VLSACSH GL+D GR  + +MT+ Y I+P + H NCMVDLLGRAG L 
Sbjct: 426 HGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLM 485

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  I+N     D + W  LLG+C T+ N  + E VAK+ ++L P    +YVLL N+Y 
Sbjct: 486 EAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYA 545

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
             G+W+    +RT+M+  G++K PG+SWIE ++K+ HD 
Sbjct: 546 EAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKI-HDF 583



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 154/278 (55%), Gaps = 14/278 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K+VH  +I   +  N  V ++L+ +Y +CG + E+  VFD ++KK+  S +A++ G
Sbjct: 44  LMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAG 103

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y +    E  +R+FREM     + +  ++ I+L+ACA L+AL+ GKEVH   IR  G + 
Sbjct: 104 YVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHA-CIRHGGLES 162

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV + +AL+ +Y KCG ++ A +IF  +   ++I+W  MI  +AQ+G G+EA R+   M 
Sbjct: 163 DVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQME 222

Query: 177 EGGTKPDHVSFIGVLSACSHMG---LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           + G KP+ ++++ +L+AC+  G    + R  +H      E  ++        +V +  ++
Sbjct: 223 QEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVG----TALVQMYAKS 278

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
           G +++A  + +    R D   W V++GA       H A
Sbjct: 279 GSIDDARVVFDRMKVR-DVVSWNVMIGAFAEHGRGHEA 315



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 111/215 (51%), Gaps = 5/215 (2%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D F +  VL+ C     L   K+VH   I+    ++  + + L+ +Y +CG +  A  +F
Sbjct: 27  DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVF 86

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
             +  ++  +WN+MI+G+ ++   E+A+R+F +M   G +P+  +++ +L AC+ +  + 
Sbjct: 87  DALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK 146

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            G++  A + +   ++  +     ++ + G+ G + EA  + +N    HD   W V++GA
Sbjct: 147 WGKEVHACI-RHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL-MNHDIISWTVMIGA 204

Query: 262 CTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDN 294
                N   A R+  ++ +   KP+  ++YV + N
Sbjct: 205 YAQSGNGKEAYRLMLQMEQEGFKPNA-ITYVSILN 238


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 129/333 (38%), Positives = 212/333 (63%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  + + +   GLC N+ + ++L+DMY KCG +  +  +FD ML+++ +S + ++ G
Sbjct: 277 LDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGG 336

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y     ++  + +FREM     E    +F  +L +CA L A+ LGK +H    +      
Sbjct: 337 YTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVS 396

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++L+DLYAKCG +  A Q+F  M +++L +WN+MI G A +G+ ++A  +F  M+ 
Sbjct: 397 TSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSS 456

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+ ++F+G+LSAC H GL+D G++ F+SM ++Y+I PK +HY CM+DLLGRAGL E
Sbjct: 457 DGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFE 516

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE+L++N + + D ++W  LLGAC       + E VA+++ EL+PD   +YVLL N+Y 
Sbjct: 517 EAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYA 576

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
             G+W+D  +IRT +   G+KK+PG + IE ++
Sbjct: 577 GAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDN 609



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 126/246 (51%), Gaps = 35/246 (14%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +GK++HA V+ LG   +V + +SL++MY + G ++ +  VFD+   ++++S +AL+ GY 
Sbjct: 147 EGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYA 206

Query: 64  QTGDFESVIRIFREMEEIDLFSFGI----------------------------------- 88
             G  +   ++F EM   D+ S+                                     
Sbjct: 207 LWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVS 266

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           VL ACA   AL LG  +      R  C ++ + +AL+D+Y+KCG +  A ++F  M  R+
Sbjct: 267 VLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERD 326

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +I+WN MI G+      +EAL +F +M   G +P  ++F+ +L +C+H+G ID G+   A
Sbjct: 327 VISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHA 386

Query: 209 SMTKEY 214
            + K +
Sbjct: 387 YINKNF 392



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 146/299 (48%), Gaps = 39/299 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYG--KCGLVDESHRVFDKMLKKNSVSSSALL 59
           ++  K++HA +I  GL   +   S L++     + G +  +  +F+ + + N    ++++
Sbjct: 42  IRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMI 101

Query: 60  QGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           +G   +      +  F  M     E + ++F  +L++CA LA+   GK++H   ++    
Sbjct: 102 RGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFV 161

Query: 116 KDVIIESALVDLYAKCG-------------------------------CVDFAHQIFLQM 144
            DV I ++L+++YA+ G                                +D A Q+F +M
Sbjct: 162 SDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEM 221

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           PV+++++WN+MI+G+AQ GR +EAL +F+DM +    P+  + + VLSAC+    +D G 
Sbjct: 222 PVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGN 281

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
               S  ++  +   ++  N ++D+  + G L+ A  L ++     D   W V++G  T
Sbjct: 282 S-MRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDM-LERDVISWNVMIGGYT 338


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  274 bits (700), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/333 (37%), Positives = 211/333 (63%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QG ++HA++   G  G+V + ++LV++Y +CG + E+   F+++  K+ ++ + L+ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSG 521

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G  E  +++F  M++     ++F+F   L A A LA ++ GK++H + I+     +
Sbjct: 522 FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE 581

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ LY KCG  + A   F +M  RN ++WN++I+  +Q+GRG EAL +FD M +
Sbjct: 582 TEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKK 641

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+ V+FIGVL+ACSH+GL++ G  +F SM+ EY I+P+ +HY C++D+ GRAG L+
Sbjct: 642 EGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLD 701

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A+  IE      D+ +W  LL AC   +N  V E  AK ++EL+P    SYVLL N Y 
Sbjct: 702 RAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYA 761

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
              +W +  ++R +M+  GV+K PG+SWIE  +
Sbjct: 762 VTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKN 794



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 143/259 (55%), Gaps = 6/259 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+HAK +T GL    +V + L+D+Y K GLV  + RVF+++  +++VS  A+L GY Q G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             E  + ++R+M    +    +    VL +C        G+ +H Q  +   C ++ + +
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           A++ LY +CG    A ++F  MP R+ +T+N++ISG AQ G GE AL IF++M   G  P
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           D V+   +L+AC+ +G + +G +  + + K   I         ++DL  + G +E A  +
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKA-GISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 243 IENADCRHDSSLWEVLLGA 261
             ++D R +  LW ++L A
Sbjct: 302 FNSSD-RTNVVLWNLMLVA 319



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 148/263 (56%), Gaps = 6/263 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+  +  G   ++ V   L+DMY K G ++++ RV + + +K+ VS ++++ GY Q
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQ 423

Query: 65  TGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               +  +  F+EM++  ++   I     +  CAG+ A+R G ++H +        DV I
Sbjct: 424 HECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSI 483

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV+LYA+CG +  A   F ++  ++ ITWN ++SGFAQ+G  EEAL++F  M + G 
Sbjct: 484 WNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGV 543

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           K +  +F+  LSA +++  I +G++  A + K      + E  N ++ L G+ G  E+A+
Sbjct: 544 KHNVFTFVSALSASANLAEIKQGKQIHARVIKTGH-SFETEVGNALISLYGKCGSFEDAK 602

Query: 241 TLIENADCRHDSSLWEVLLGACT 263
                   R++ S W  ++ +C+
Sbjct: 603 MEFSEMSERNEVS-WNTIITSCS 624



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 5/245 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QG+ +HA+    G C  + V ++++ +Y +CG    + RVF  M  +++V+ + L+ G+ 
Sbjct: 161 QGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHA 220

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G  E  + IF EM+      D  +   +L ACA L  L+ G ++H    +     D I
Sbjct: 221 QCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYI 280

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +E +L+DLY KCG V+ A  IF      N++ WN M+  F Q     ++  +F  M   G
Sbjct: 281 MEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG 340

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +P+  ++  +L  C+    ID G +   S++ +   +  +     ++D+  + G LE+A
Sbjct: 341 IRPNQFTYPCILRTCTCTREIDLG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKA 399

Query: 240 ETLIE 244
             ++E
Sbjct: 400 RRVLE 404



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 143/285 (50%), Gaps = 11/285 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G ++H+ +   G+  + ++E SL+D+Y KCG V+ +  +F+   + N V  + +L  
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q  D      +F +M+   +    F++  +LR C     + LG+++H   ++     D
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESD 379

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + +   L+D+Y+K G ++ A ++   +  +++++W SMI+G+ Q+   ++AL  F +M +
Sbjct: 380 MYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQK 439

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G  PD++     +S C+ +  + +G + H       Y     I  +N +V+L  R G +
Sbjct: 440 CGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSI--WNALVNLYARCGRI 497

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281
            EA +  E  + + D   W    G  + F  + + E   K  M +
Sbjct: 498 REAFSSFEEIEHK-DEITWN---GLVSGFAQSGLHEEALKVFMRM 538


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  274 bits (700), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 212/336 (63%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H  VI +GL  +V V ++L+D+Y KCG ++ S  +F +   +N V+ + ++ G
Sbjct: 154 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVG 213

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q GD E  +R+F  M E  +     ++   LRACA LAAL  G ++H   ++ +  KD
Sbjct: 214 HVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKD 273

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +++ +AL+D+YAKCG +  A  +F  M  ++ ++WN+MISG++ +G G EALRIFD M E
Sbjct: 274 IVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQE 333

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD ++F+GVLSAC++ GL+D+G+ +F SM +++ I+P IEHY CMV LLGR G L+
Sbjct: 334 TEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLD 393

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LI+    +    +W  LLGAC    +  +    A++++E++P    ++VLL N+Y 
Sbjct: 394 KAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYA 453

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              RW++   +R  MK  GVKK PG SWIE+   ++
Sbjct: 454 TAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVH 489



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 161/286 (56%), Gaps = 7/286 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +GK +H +++  G C ++   + L++MY K   + ++ ++FD+M ++N++S   L+QGY 
Sbjct: 56  RGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 64  QTGDFESVIRIF-REMEEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           ++  F   I +F R   E+  + F+F  VL+ACA +  L LG ++HC  I+     DV +
Sbjct: 116 ESVRFLEAIELFVRLHREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFV 175

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+YAKCG ++ + ++F + P RN +TWN++I G  Q G GE+ALR+F +M E   
Sbjct: 176 SNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRV 235

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +   V++   L AC+ +  ++ G +   S+T +      I   N ++D+  + G +++A 
Sbjct: 236 QATEVTYSSALRACASLAALEPGLQ-IHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDAR 294

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
            + +  + + D   W  ++   +       A R+  K+   E+KPD
Sbjct: 295 LVFDLMN-KQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPD 339



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 93/181 (51%), Gaps = 2/181 (1%)

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E +  ++   L+ C        GK +HC+ ++R GC D+   + L+++Y K   +  A +
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +MP RN I++ ++I G+A++ R  EA+ +F  +      P+  +F  VL AC+ M  
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHR-EVLPNQFTFASVLQACATMEG 153

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           ++ G +    + K   +   +   N ++D+  + G +E +  L   +  R+D +   V++
Sbjct: 154 LNLGNQIHCHVIK-IGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIV 212

Query: 260 G 260
           G
Sbjct: 213 G 213


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 126/333 (37%), Positives = 211/333 (63%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QG ++HA++   G  G+V + ++LV++Y +CG + E+   F+++  K+ ++ + L+ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSG 521

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G  E  +++F  M++     ++F+F   L A A LA ++ GK++H + I+     +
Sbjct: 522 FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE 581

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ LY KCG  + A   F +M  RN ++WN++I+  +Q+GRG EAL +FD M +
Sbjct: 582 TEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKK 641

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+ V+FIGVL+ACSH+GL++ G  +F SM+ EY I+P+ +HY C++D+ GRAG L+
Sbjct: 642 EGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLD 701

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A+  IE      D+ +W  LL AC   +N  V E  AK ++EL+P    SYVLL N Y 
Sbjct: 702 RAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYA 761

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
              +W +  ++R +M+  GV+K PG+SWIE  +
Sbjct: 762 VTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKN 794



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 143/259 (55%), Gaps = 6/259 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+HAK +T GL    +V + L+D+Y K GLV  + RVF+++  +++VS  A+L GY Q G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             E  + ++R+M    +    +    VL +C        G+ +H Q  +   C ++ + +
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           A++ LY +CG    A ++F  MP R+ +T+N++ISG AQ G GE AL IF++M   G  P
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           D V+   +L+AC+ +G + +G +  + + K   I         ++DL  + G +E A  +
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKA-GISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 243 IENADCRHDSSLWEVLLGA 261
             ++D R +  LW ++L A
Sbjct: 302 FNSSD-RTNVVLWNLMLVA 319



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 148/263 (56%), Gaps = 6/263 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+  +  G   ++ V   L+DMY K G ++++ RV + + +K+ VS ++++ GY Q
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQ 423

Query: 65  TGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               +  +  F+EM++  ++   I     +  CAG+ A+R G ++H +        DV I
Sbjct: 424 HECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSI 483

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV+LYA+CG +  A   F ++  ++ ITWN ++SGFAQ+G  EEAL++F  M + G 
Sbjct: 484 WNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGV 543

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           K +  +F+  LSA +++  I +G++  A + K      + E  N ++ L G+ G  E+A+
Sbjct: 544 KHNVFTFVSALSASANLAEIKQGKQIHARVIKTGH-SFETEVGNALISLYGKCGSFEDAK 602

Query: 241 TLIENADCRHDSSLWEVLLGACT 263
                   R++ S W  ++ +C+
Sbjct: 603 MEFSEMSERNEVS-WNTIITSCS 624



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 5/245 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QG+ +HA+    G C  + V ++++ +Y +CG    + RVF  M  +++V+ + L+ G+ 
Sbjct: 161 QGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHA 220

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G  E  + IF EM+      D  +   +L ACA L  L+ G ++H    +     D I
Sbjct: 221 QCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYI 280

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +E +L+DLY KCG V+ A  IF      N++ WN M+  F Q     ++  +F  M   G
Sbjct: 281 MEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG 340

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +P+  ++  +L  C+    ID G +   S++ +   +  +     ++D+  + G LE+A
Sbjct: 341 IRPNQFTYPCILRTCTCTREIDLG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKA 399

Query: 240 ETLIE 244
             ++E
Sbjct: 400 RRVLE 404



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 143/285 (50%), Gaps = 11/285 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G ++H+ +   G+  + ++E SL+D+Y KCG V+ +  +F+   + N V  + +L  
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q  D      +F +M+   +    F++  +LR C     + LG+++H   ++     D
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESD 379

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + +   L+D+Y+K G ++ A ++   +  +++++W SMI+G+ Q+   ++AL  F +M +
Sbjct: 380 MYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQK 439

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G  PD++     +S C+ +  + +G + H       Y     I  +N +V+L  R G +
Sbjct: 440 CGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSI--WNALVNLYARCGRI 497

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281
            EA +  E  + + D   W    G  + F  + + E   K  M +
Sbjct: 498 REAFSSFEEIEHK-DEITWN---GLVSGFAQSGLHEEALKVFMRM 538


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 207/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G E+H +++  G+  +  V S+LVDMYGKCG++ E+ ++ D++ +K +VS ++++ G
Sbjct: 457 LNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISG 516

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +      E+  R F +M E+    D F++  VL  CA +A + LGK++H Q ++ +   D
Sbjct: 517 FSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSD 576

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I S LVD+Y+KCG +  +  +F + P R+ +TW++MI  +A +G GE+A+++F++M  
Sbjct: 577 VYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQL 636

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP+H  FI VL AC+HMG +D+G  +F  M   Y + P +EHY+CMVDLLGR+  + 
Sbjct: 637 LNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVN 696

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LIE+     D  +W  LL  C    N  VAE+    +++L P    +YVLL NVY 
Sbjct: 697 EALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYA 756

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            VG W +  KIR++MK   +KK PG SWIE   +++
Sbjct: 757 NVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRDEVH 792



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 158/287 (55%), Gaps = 8/287 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G ++H   +  GL  N+ V ++++DMYGKCG + E+  +FD M ++++VS +A++  + 
Sbjct: 358 EGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHE 417

Query: 64  QTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q  +    + +F    R   E D F++G V++ACAG  AL  G E+H + ++     D  
Sbjct: 418 QNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWF 477

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + SALVD+Y KCG +  A +I  ++  +  ++WNS+ISGF+   + E A R F  M E G
Sbjct: 478 VGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMG 537

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PD+ ++  VL  C++M  I+ G++  A + K   +   +   + +VD+  + G ++++
Sbjct: 538 VIPDNFTYATVLDVCANMATIELGKQIHAQILK-LNLHSDVYIASTLVDMYSKCGNMQDS 596

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK--KIMELKPD 284
             + E    R D   W  ++ A     +   A ++ +  +++ +KP+
Sbjct: 597 RLMFEKTPKR-DYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPN 642



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 147/262 (56%), Gaps = 8/262 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH   I +G   +VV  S+LVDMY KC  +D + R+F +M ++N V  SA++ GY Q
Sbjct: 157 GLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQ 216

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              F   +++F++M ++ +     ++  V R+CAGL+A +LG ++H   ++     D II
Sbjct: 217 NDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSII 276

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A +D+YAKC  +  A ++F  +P     ++N++I G+A+  +G +AL IF  +     
Sbjct: 277 GTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYL 336

Query: 181 KPDHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             D +S  G L+ACS + G ++  + H   +  +  +   I   N ++D+ G+ G L EA
Sbjct: 337 SFDEISLSGALTACSVIKGHLEGIQLH--GLAVKCGLGFNICVANTILDMYGKCGALVEA 394

Query: 240 ETLIENADCRHDSSLWEVLLGA 261
            T+ ++ + R D+  W  ++ A
Sbjct: 395 CTIFDDME-RRDAVSWNAIIAA 415



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 117/239 (48%), Gaps = 35/239 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+ HA++I       + V + LV  Y K   ++ + +VFD+M  ++ +S + ++ G
Sbjct: 22  LNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRDVISWNTMIFG 81

Query: 62  YCQTGDFESVIRIFREMEEIDLFS-----------------------------------F 86
           Y + G+      +F  M E D+ S                                   F
Sbjct: 82  YAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATF 141

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            +VL+AC+G+    LG +VHC  I+     DV+  SALVD+Y+KC  +D A +IF +MP 
Sbjct: 142 SVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPE 201

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           RNL+ W+++I+G+ QN R  E L++F DM + G      ++  V  +C+ +     G +
Sbjct: 202 RNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQ 260



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 144/303 (47%), Gaps = 18/303 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K G ++H   +      + ++ ++ +DMY KC  + ++ +VF+ +      S +A++ G
Sbjct: 255 FKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVG 314

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +       + IF+ ++      D  S    L AC+ +     G ++H   ++     +
Sbjct: 315 YARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFN 374

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + + ++D+Y KCG +  A  IF  M  R+ ++WN++I+   QN    + L +F  M  
Sbjct: 375 ICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLR 434

Query: 178 GGTKPDHVSFIGVLSACS-----HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
              +PD  ++  V+ AC+     + G+   GR   + M  ++ +       + +VD+ G+
Sbjct: 435 STMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVG------SALVDMYGK 488

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK--PDCHLSYV 290
            G+L EAE + +  + +   S W  ++   ++ + +  A+R   +++E+   PD      
Sbjct: 489 CGMLMEAEKIHDRLEEKTTVS-WNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYAT 547

Query: 291 LLD 293
           +LD
Sbjct: 548 VLD 550



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 4/133 (3%)

Query: 78  MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
           M     F+F  +L+ C+ L AL  GK+ H Q I  S    + + + LV  Y K   +++A
Sbjct: 1   MNPTKKFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYA 60

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
            ++F +MP R++I+WN+MI G+A+ G    A  +FD M E     D VS+  +LS   H 
Sbjct: 61  FKVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPE----RDVVSWNSLLSCYLHN 116

Query: 198 GLIDRGRKHFASM 210
           G+  +  + F  M
Sbjct: 117 GVNRKSIEIFVRM 129


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 135/324 (41%), Positives = 208/324 (64%), Gaps = 6/324 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +HA  + +GL  +V V SSL+D Y K G +D   RVFD+M+ ++ V  ++++ G+ Q+GD
Sbjct: 201 LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGD 260

Query: 68  FESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
               I +F  M++        +   VLRAC G+  L  G++VH   ++    +D+I+ +A
Sbjct: 261 GVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLKYE--RDLILHNA 318

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L+D+Y KCG ++ A  +F +MP R++I+W++MISG AQNG+  EALR+FD M   G  P+
Sbjct: 319 LLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPN 378

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
            ++ +GVL ACSH GL++ G  +F SM K + I+P+ EH+NCMVDLLGRAG L+EA   I
Sbjct: 379 RITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFI 438

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
            + +   D+ +W  LLGAC   ++ ++A   A++I++L+PD   + VLL N Y  + +W 
Sbjct: 439 RDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYADLRQWT 498

Query: 304 DAFKIRTLMKYSGVKKMPGKSWIE 327
           DA K    M+  G+KK PG+SWIE
Sbjct: 499 DAEKSWKAMRDRGMKKEPGRSWIE 522



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 132/249 (53%), Gaps = 12/249 (4%)

Query: 16  GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT-GDFESVIR- 73
           G  G + V +SLV MY K GL+D++ R+FD+M ++N V+ + ++       G  E  +R 
Sbjct: 110 GAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRF 169

Query: 74  ---IFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
              ++R+    + ++F  VL AC     L     +H   ++     DV + S+L+D Y K
Sbjct: 170 LVAMWRDGVAPNAYTFSSVLGACGTPGVL---AALHASTVKVGLDSDVFVRSSLIDAYMK 226

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
            G +D   ++F +M  R+L+ WNS+I+GFAQ+G G  A+ +F  M + G   +  +   V
Sbjct: 227 LGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSV 286

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
           L AC+ M +++ GR+  A + K  R    +  +N ++D+  + G LE+AE L      R 
Sbjct: 287 LRACTGMVMLEAGRQVHAHVLKYER---DLILHNALLDMYCKCGSLEDAEALFHRMPQR- 342

Query: 251 DSSLWEVLL 259
           D   W  ++
Sbjct: 343 DVISWSTMI 351



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 3/100 (3%)

Query: 104 EVHCQYIRRSGCKD--VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
           E H Q    SG     + + ++LV +YAK G +D A ++F +MP RN++TW ++++  A 
Sbjct: 99  EAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALAN 158

Query: 162 -NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
            +GR EEALR    M   G  P+  +F  VL AC   G++
Sbjct: 159 ADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVL 198


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 216/373 (57%), Gaps = 42/373 (11%)

Query: 3   KQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGL------------------------- 36
           ++G++VHA ++    L  ++V+ ++LVDMY KCG                          
Sbjct: 269 REGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTG 328

Query: 37  ------VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSF 86
                 V+++  VF +M++KN ++ + L+  Y Q G+ E  IR+F +++   +    +++
Sbjct: 329 YAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTY 388

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRS------GCKDVIIESALVDLYAKCGCVDFAHQI 140
           G VL AC  +A L+LG++ H   ++           DV + ++LVD+Y K G +D   ++
Sbjct: 389 GNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 448

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F +M  R+ ++WN+MI G+AQNGR ++AL +F+ M      PD V+ IGVLSAC H GL+
Sbjct: 449 FERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLV 508

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           D GR++F SMT+++ I P  +HY CMVDLLGRAG L+EAE LI +     DS LW  LLG
Sbjct: 509 DEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLG 568

Query: 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
           AC   +N  + E  A ++ EL P     YVLL N+Y  +G+W + F++R  MK  GV K 
Sbjct: 569 ACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQ 628

Query: 321 PGKSWIEANSKLN 333
           PG SWIE   K+N
Sbjct: 629 PGCSWIEIGRKMN 641



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 149/316 (47%), Gaps = 38/316 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   +  HA+++   + G   + ++LV  Y + G + ++ RVFD++  +N+ S +ALL  
Sbjct: 33  LSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSA 92

Query: 62  YCQTGD-------FESV--------------------------IRIFREMEEIDL----F 84
           Y + G        FE++                          +R    M   D     +
Sbjct: 93  YARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAY 152

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           SF   L ACA     R G++VH    R     DV I SALVD+YAKC   + A ++F  M
Sbjct: 153 SFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAM 212

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P RN+++WNS+I+ + QNG   EAL +F +M   G  PD V+   V+SAC+ +     GR
Sbjct: 213 PERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGR 272

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           +  A M K  R++  +   N +VD+  + G   EA  + ++   R   S   +L G   +
Sbjct: 273 QVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKS 332

Query: 265 FRNAHVAERVAKKIME 280
             N   A+ V  +++E
Sbjct: 333 -ANVEDAQVVFSQMVE 347



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 151/305 (49%), Gaps = 41/305 (13%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           + G++VH  V       +V + S+LVDMY KC   +++ RVFD M ++N VS ++L+  Y
Sbjct: 168 RTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCY 227

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD- 117
            Q G     + +F EM       D  +   V+ ACAGLAA R G++VH   ++    +D 
Sbjct: 228 EQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDD 287

Query: 118 VIIESALVDLYAKCG-------------------------------CVDFAHQIFLQMPV 146
           +++ +ALVD+YAKCG                                V+ A  +F QM  
Sbjct: 288 MVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVE 347

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +N+I WN +I+ +AQNG  EEA+R+F  +      P H ++  VL+AC ++  +  G++ 
Sbjct: 348 KNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQA 407

Query: 207 FASMTKE---YRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
              + KE   +   P+ + +  N +VD+  + G +++   + E    R + S   +++G 
Sbjct: 408 HVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGY 467

Query: 262 CTTFR 266
               R
Sbjct: 468 AQNGR 472


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  274 bits (700), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 138/330 (41%), Positives = 206/330 (62%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  +H   I  G   +++V ++L+ MY KCG+++ + R F++M  +++VS +A++ G
Sbjct: 341 LSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISG 400

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G+ E  +R+F EM+      +  +   VL ACA LA L  G   HC  I      D
Sbjct: 401 YVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTAD 460

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            +I +AL+D+YAKCG +D A ++F +M  R +++WN+MI  +  +G G EAL +FD+M  
Sbjct: 461 TMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQS 520

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+FI ++SACSH GL+  G+  F +MT+++ I P++EHY CMVDLL RAGL +
Sbjct: 521 EGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFK 580

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E  + IE      D  +W  LL AC  ++N  + E V+KKI +L P+   ++VLL N+Y 
Sbjct: 581 EVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYS 640

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           AVGRW+DA ++R   K  G +K PG SWIE
Sbjct: 641 AVGRWDDAAQVRFTQKEQGFEKSPGCSWIE 670



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 137/255 (53%), Gaps = 17/255 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQ 60
           L+ GKE+H   +  G  G+VVV + ++D+YGKC  +D + R+FD M + KN V+ SA++ 
Sbjct: 236 LRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVG 295

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFS---FGIVLRACAGLAALRLGKEVHCQYIRRS 113
            Y         + +F ++    +++ + S      V+R CA L  L  G  +HC  I+  
Sbjct: 296 AYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSG 355

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D+++ + L+ +YAKCG ++ A + F +M +R+ +++ ++ISG+ QNG  EE LR+F 
Sbjct: 356 FVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFL 415

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI----KPKIEHYNCMVDL 229
           +M   G  P+  +   VL AC+H+  +     H+ S +  Y I           N ++D+
Sbjct: 416 EMQLSGINPEKATLASVLPACAHLAGL-----HYGSCSHCYAIICGFTADTMICNALIDM 470

Query: 230 LGRAGLLEEAETLIE 244
             + G ++ A  + +
Sbjct: 471 YAKCGKIDTARKVFD 485



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 138/286 (48%), Gaps = 10/286 (3%)

Query: 27  LVDMYGKCGLVDESHRVFDKML--KKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL- 83
           LVD+Y  C  +  +  VFDKM    KN V  + L++ Y   G +E  I ++ +M    + 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 84  ---FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
              F+F  VL+AC+ L     G+E+HC   R     +V + +ALVD YAKCGC+D A ++
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEV 176

Query: 141 FLQMPVRNLITWNSMISGFA-QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           F +M  R+++ WNSMISGF+   G  +E  R+   M +    P+  + +GVL A + +  
Sbjct: 177 FDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQVNS 235

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +  G++      +   +   +     ++D+ G+   ++ A  + +      +   W  ++
Sbjct: 236 LRHGKEIHGFCVRRGFVGDVVVGTG-ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMV 294

Query: 260 GACTTFRNAHVAERVAKKIMELKPDC-HLSYVLLDNVYRAVGRWND 304
           GA         A  +  +++ LK D   LS V L  V R      D
Sbjct: 295 GAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTD 340



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 140/266 (52%), Gaps = 11/266 (4%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G+E+H  +  L L  NV V ++LVD Y KCG +D++  VFDKM K++ V+ ++++ G+ 
Sbjct: 137 EGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFS 196

Query: 64  -QTGDFESVIRIFREME-EIDLFSFGI--VLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              G ++ V R+  +M+ ++   S  I  VL A A + +LR GKE+H   +RR    DV+
Sbjct: 197 LHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVV 256

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIFDD---M 175
           + + ++D+Y KC C+D+A +IF  M  V+N +TW++M+  +       EAL +F     +
Sbjct: 257 VGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLML 316

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
            +       V+   V+  C+++  +  G   H  ++   + +   +   N ++ +  + G
Sbjct: 317 KDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVG--NTLLSMYAKCG 374

Query: 235 LLEEAETLIENADCRHDSSLWEVLLG 260
           ++  A       D R   S   ++ G
Sbjct: 375 IINGAMRFFNEMDLRDAVSFTAIISG 400


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  273 bits (699), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 139/336 (41%), Positives = 207/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK++HA +I      N+ V S+L+DMY KC  V  +  VF KM  KN +S +A+L G
Sbjct: 286 LDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVG 345

Query: 62  YCQTGDFESVIRIFREME--EI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  +RIF +M+  EI  D F+ G V+ +CA LA+L  G + H Q +       
Sbjct: 346 YGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICF 405

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+ LY KCG ++ AHQ+F +M +R+ ++W +++SG+AQ G+  E + +F+ M  
Sbjct: 406 VTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLA 465

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V+F+GVLSACS  GL+++G  +F  M KE+RI P  +HY CM+DLL RAG LE
Sbjct: 466 HGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLE 525

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  I       D+  W  LL +C    N  + +  A+ + +L+P    SY+LL ++Y 
Sbjct: 526 EAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYA 585

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G+W+D  K+R  M+  GVKK PG SWI+  +K++
Sbjct: 586 AKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVH 621



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 147/300 (49%), Gaps = 37/300 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVF-------------------- 44
           G+++H ++   G    + V S LVDMY K G +++++R+F                    
Sbjct: 157 GRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLR 216

Query: 45  -----------DKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIV 89
                      D M +K+S+S + ++ G  Q G F+  +  F+EM      +D F+FG V
Sbjct: 217 CRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSV 276

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L AC G  AL  GK++H   IR     ++ + SAL+D+Y KC  V +A  +F +M  +N+
Sbjct: 277 LTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNV 336

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           I+W +M+ G+ QNG  EEA+RIF DM      PD  +   V+S+C+++  ++ G + F  
Sbjct: 337 ISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQ-FHG 395

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
                 +   +   N ++ L G+ G LE A  L      R + S W  L+     F  A+
Sbjct: 396 QALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVS-WTALVSGYAQFGKAN 454



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 103/199 (51%), Gaps = 9/199 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+   ++L+  Y K G + +  RVFD M   + VS ++LL GY   G     +R++  M 
Sbjct: 70  NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMML 129

Query: 80  E-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
           +     ++  +F  +L   +    + LG+++H Q  +      + + S LVD+YAK G +
Sbjct: 130 KDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFI 189

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           + A++IF ++P +N++ +N+MI+G  +     EA ++FD+M E     D +S+  +++  
Sbjct: 190 NDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPE----KDSISWTTIITGL 245

Query: 195 SHMGLIDRGRKHFASMTKE 213
           +  GL       F  M  E
Sbjct: 246 TQNGLFKEAVDKFKEMGIE 264



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 8/137 (5%)

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           K++HC+ IR     +  + + L++ Y K G +  A  +F  +P  NL +WN+++S +++ 
Sbjct: 25  KKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKL 84

Query: 163 GRGEEALRIFDDMTEGGTKPDH--VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI 220
           G  ++  R+FD M      P+H  VS+  +LS  +  GLI    + +  M K+  +    
Sbjct: 85  GYLQDMQRVFDSM------PNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNR 138

Query: 221 EHYNCMVDLLGRAGLLE 237
             ++ M+ L    G ++
Sbjct: 139 ITFSTMLILSSNRGFVD 155


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  273 bits (698), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 130/320 (40%), Positives = 208/320 (65%), Gaps = 4/320 (1%)

Query: 18  CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFRE 77
           C NV   ++++  Y + G++DE+  +F  M +K++VS +A+L  Y Q G  E  +++F+E
Sbjct: 383 CRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKE 442

Query: 78  M----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133
           M    E ++  +F  VL  CA +AAL  G ++H + I+        + +AL+ +Y KCG 
Sbjct: 443 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGS 502

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           ++ AH  F +M  R++++WN+MI+G+A++G G+EAL +FD M +  TKPD ++ +GVL+A
Sbjct: 503 MEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAA 562

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           CSH GL+++G  +F SM +++ +  K EHY CM+DLLGRAG L+EA  L+++     DS+
Sbjct: 563 CSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDST 622

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           +W  LLGA    RN+ +    A+KI EL+P+    YVLL N+Y + G+W D  K+R +M 
Sbjct: 623 MWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMH 682

Query: 314 YSGVKKMPGKSWIEANSKLN 333
             GVKK+PG SWIE  +K++
Sbjct: 683 ERGVKKVPGFSWIEVQNKVH 702



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 120/264 (45%), Gaps = 18/264 (6%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80
           V+  +  +  + + G V ++ R+F  M ++++ + + +L GY   G     +  FR +  
Sbjct: 107 VIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR 166

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
            D FS+  +L A    ++L    +V   +      KD +  + ++  +A  G V  A   
Sbjct: 167 PDSFSYNTLLHALGVSSSL---ADVRALFDEMP-VKDSVSYNVMISSHANHGLVSLARHY 222

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F   P ++ ++WN M++ + +NGR +EA  +FD  TE     D +S+  +++       I
Sbjct: 223 FDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEW----DAISWNALMAGYVQRSQI 278

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +  +K F  M +       +  +N MV    R G + EA  L + A  R D   W  ++ 
Sbjct: 279 EEAQKMFNKMPQR-----DVVSWNTMVSGYARRGDMAEARRLFDVAPIR-DVFTWTAIVS 332

Query: 261 ACTTFRNAHVAERVAKKIMELKPD 284
                +N  + E  AK++ +  PD
Sbjct: 333 GYA--QNGMLEE--AKRVFDAMPD 352



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 121/242 (50%), Gaps = 8/242 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  +++V  Y + G + E+ R+FD    ++  + +A++ GY Q G  E   R+F  M 
Sbjct: 292 DVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMP 351

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           + +  S+  ++ A      +   KE+         C++V   + ++  YA+ G +D A  
Sbjct: 352 DKNAVSWNAMMAAYVQRRMMEEAKEL----FDAMPCRNVASWNTMLTGYAQAGMLDEARA 407

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           IF  MP ++ ++W +M++ ++Q G  EE L++F +M   G   +  +F  VLS C+ +  
Sbjct: 408 IFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAA 467

Query: 200 IDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           ++ G +  + + K  Y +   +   N ++ +  + G +EEA +  E  + R D   W  +
Sbjct: 468 LECGMQLHSRLIKAGYGVGCFVG--NALLAMYFKCGSMEEAHSAFEEMEER-DVVSWNTM 524

Query: 259 LG 260
           + 
Sbjct: 525 IA 526



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 115/235 (48%), Gaps = 14/235 (5%)

Query: 27  LVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSF 86
           ++  +   GLV  +   FD   +K++VS + +L  Y + G  +    +F    E D  S+
Sbjct: 206 MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISW 265

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             ++      + +   +++  +  +R    DV+  + +V  YA+ G +  A ++F   P+
Sbjct: 266 NALMAGYVQRSQIEEAQKMFNKMPQR----DVVSWNTMVSGYARRGDMAEARRLFDVAPI 321

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R++ TW +++SG+AQNG  EEA R+FD M +       VS+  +++A     +++  ++ 
Sbjct: 322 RDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNA----VSWNAMMAAYVQRRMMEEAKEL 377

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           F +M         +  +N M+    +AG+L+EA  +      + D+  W  +L A
Sbjct: 378 FDAMPCR-----NVASWNTMLTGYAQAGMLDEARAIF-GMMPQKDAVSWAAMLAA 426



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++H+++I  G      V ++L+ MY KCG ++E+H  F++M +++ VS + ++ G
Sbjct: 468 LECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAG 527

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  +  + +F  M +     D  +   VL AC+    +  G        R  G   
Sbjct: 528 YARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVAT 587

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMI 156
                + ++DL  + G +D A  +   MP     T W +++
Sbjct: 588 KPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALL 628



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +VI  +  +  + + G V  A ++F  MP R+  T+N+M++G+A NGR  +AL  F  + 
Sbjct: 106 EVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSI- 164

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               +PD  S+  +L A      +   R  F  M     +K  +  YN M+      GL+
Sbjct: 165 ---PRPDSFSYNTLLHALGVSSSLADVRALFDEMP----VKDSVS-YNVMISSHANHGLV 216

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
             A    + A  + D+  W  +L A    RN  + E
Sbjct: 217 SLARHYFDLAPEK-DAVSWNGMLAAYV--RNGRIQE 249


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  273 bits (698), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 133/332 (40%), Positives = 209/332 (62%), Gaps = 4/332 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +GKE+H  VI  G+  +V + SSLVDMY K   +++S RVF  + +++S+S ++L+ GY 
Sbjct: 224 KGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYV 283

Query: 64  QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G +   +R+FR+M    +     +F  V+ ACA LA L LGK++H   +R    +++ 
Sbjct: 284 QNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIF 343

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I SALVD+Y+KCG +  A +IF +M + + ++W ++I G A +G G EA+ +F++M   G
Sbjct: 344 IASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQG 403

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KP+ V+F+ VL+ACSH+GL+D    +F SMTK Y +  ++EHY  + DLLGRAG LEEA
Sbjct: 404 VKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEA 463

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
              I         S+W  LL +C+  +N  +AE+VA+KI  +  +   +YVL+ N+Y + 
Sbjct: 464 YDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASN 523

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           GRW +  K+R  ++  G++K P  SWIE  +K
Sbjct: 524 GRWKEMAKLRLRVRKKGLRKKPACSWIEMKNK 555



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 144/262 (54%), Gaps = 6/262 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ VH  ++ LG+  ++   ++L++MY K   +D   +VF+ M +K+ VS + ++ G
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAG 180

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q+G +E  +R+ REM   DL    F+   VL   +    +  GKE+H   IR+    D
Sbjct: 181 YAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSD 240

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I S+LVD+YAK   ++ + ++F  +  R+ I+WNS+++G+ QNGR  EALR+F  M  
Sbjct: 241 VYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVS 300

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +P  V+F  V+ AC+H+  +  G++    + +       I   + +VD+  + G ++
Sbjct: 301 AKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFGRNIFIASALVDMYSKCGNIQ 359

Query: 238 EAETLIENADCRHDSSLWEVLL 259
            A  + +  +  HD   W  ++
Sbjct: 360 AARKIFDRMNL-HDEVSWTAII 380



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 138/283 (48%), Gaps = 7/283 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           Q K++HA+ I      +    S ++ +Y    L+ E+  VF  +     ++  ++++ + 
Sbjct: 23  QAKQLHAQFIRTQSLSHTSA-SIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFT 81

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
               F   +  F EM       D   F  VL++C  +  LR G+ VH   +R     D+ 
Sbjct: 82  DQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
             +AL+++Y+K   +D   ++F  MP ++++++N++I+G+AQ+G  E+ALR+  +M    
Sbjct: 142 TGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSD 201

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD  +   VL   S    + +G++    + ++  I   +   + +VD+  ++  +E++
Sbjct: 202 LKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDS 260

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
           E +  +   R DS  W  L+         + A R+ ++++  K
Sbjct: 261 ERVFSHL-YRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAK 302



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H  V+  G   N+ + S+LVDMY KCG +  + ++FD+M   + VS +A++ G
Sbjct: 323 LHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMG 382

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           +   G     + +F EM+    + +  +F  VL AC+ +  +           +  G  +
Sbjct: 383 HALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQ 442

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL-ITWNSMIS 157
           ++   +A+ DL  + G ++ A+    +M V      W++++S
Sbjct: 443 ELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLS 484


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  273 bits (698), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 136/337 (40%), Positives = 210/337 (62%), Gaps = 9/337 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H++ I       V+V +SLVDMY KC    E++R+F  +  ++SV  +AL+ G
Sbjct: 357 LEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISG 416

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           Y Q G  E  +++F EM       D  ++  +LRACA LA+L LGK++H + IR SGC  
Sbjct: 417 YVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIR-SGCLS 475

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V   SALVD+YAKCG +  A Q+F +MPVRN ++WN++IS +AQNG G  ALR F+ M 
Sbjct: 476 NVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMI 535

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P+ VSF+ +L ACSH GL++ G ++F SMT+ Y+++P+ EHY  MVD+L R+G  
Sbjct: 536 HSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRF 595

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK--PDCHLSYVLLDN 294
           +EAE L+       D  +W  +L +C   +N  +A + A ++  +K   D    YV + N
Sbjct: 596 DEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDA-APYVSMSN 654

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           +Y A G W+   K++  ++  G++K+P  SW+E   K
Sbjct: 655 IYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQK 691



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 135/261 (51%), Gaps = 6/261 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH+ V+      NV V ++L+D Y K   + E+ ++F +M + + +S + L+     
Sbjct: 259 GQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAW 318

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + +FRE++        F F  +L   A    L +G+++H Q I      +V++
Sbjct: 319 NGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLV 378

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++LVD+YAKC     A++IF  +  ++ + W ++ISG+ Q G  E+ L++F +M     
Sbjct: 379 GNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKI 438

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D  ++  +L AC+++  +  G++  + + +   +   +   + +VD+  + G ++EA 
Sbjct: 439 GADSATYASILRACANLASLTLGKQLHSRIIRSGCLS-NVFSGSALVDMYAKCGSIKEAL 497

Query: 241 TLIENADCRHDSSLWEVLLGA 261
            + +    R+  S W  L+ A
Sbjct: 498 QMFQEMPVRNSVS-WNALISA 517



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 132/259 (50%), Gaps = 8/259 (3%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           +VH  V+ +G    ++V +SL+D Y K   +  +  +F  M +K++V+ +ALL GY + G
Sbjct: 160 QVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEG 219

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
                I +F +M+++      F+F  VL A   +  +  G++VH   ++ +   +V + +
Sbjct: 220 FNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVAN 279

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           AL+D Y+K   +  A ++F +MP  + I++N +I+  A NGR EE+L +F ++       
Sbjct: 280 ALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDR 339

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
               F  +LS  ++   ++ GR+  +       I  ++   N +VD+  +     EA  +
Sbjct: 340 RQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAIS-EVLVGNSLVDMYAKCDKFGEANRI 398

Query: 243 IENADCRHDSSL-WEVLLG 260
              AD  H SS+ W  L+ 
Sbjct: 399 F--ADLAHQSSVPWTALIS 415



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 96/190 (50%), Gaps = 4/190 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV+  ++++  Y K G +  +  +FD M++++ V+ + L+ GY Q   F     +F +M 
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 D  +   +L       ++    +VH   ++      +++ ++L+D Y K   + 
Sbjct: 132 RHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLG 191

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A  +F  M  ++ +T+N++++G+++ G   +A+ +F  M + G +P   +F  VL+A  
Sbjct: 192 LACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGI 251

Query: 196 HMGLIDRGRK 205
            M  I+ G++
Sbjct: 252 QMDDIEFGQQ 261



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K+VI  + ++  Y K G +  A  +F  M  R+++TW  +I G+AQ+ R  EA  +F DM
Sbjct: 71  KNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADM 130

Query: 176 TEGGTKPDHVSFIGVLS 192
              G  PDH++   +LS
Sbjct: 131 CRHGMVPDHITLATLLS 147


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  273 bits (698), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 133/330 (40%), Positives = 209/330 (63%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VH  V+ +GL GNV V ++L+D+Y KCG +D S ++F ++  +N V+ + ++ G
Sbjct: 259 LQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVG 318

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q+GD +  + +++ M E  +     ++  VLRACA LAA+ LG ++H   ++    KD
Sbjct: 319 YVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKD 378

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V++ +AL+D+YAKCG +  A  +F  +  R+ I+WN+MISG++ +G   EAL+ F  M E
Sbjct: 379 VVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQE 438

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+ ++F+ +LSACS+ GL+D G+ +F SM ++Y I+P +EHY CMV LLGR+G L+
Sbjct: 439 TECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLD 498

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LIE      +  +W  LLGAC    +  +    A++I+++ P    ++VLL N+Y 
Sbjct: 499 KAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYA 558

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
              RWN    +R  MK  GVKK PG SWIE
Sbjct: 559 RTRRWNSVASVRKFMKNKGVKKEPGLSWIE 588



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 145/260 (55%), Gaps = 8/260 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK VH  V+      ++ V   L+D+Y K G  ++  RVF++M K + +  S ++  Y Q
Sbjct: 161 GKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQ 220

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +      + +F +M       + F+F  VL++CA +  L+LGK+VHC  ++     +V +
Sbjct: 221 SNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFV 280

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+YAKCG +D + ++F+++P RN +TWN+MI G+ Q+G G++AL ++ +M E   
Sbjct: 281 SNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQV 340

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           +   V++  VL AC+ +  ++ G + H  S+   Y     +   N ++D+  + G ++ A
Sbjct: 341 QASEVTYSSVLRACASLAAMELGTQIHSLSLKTIY--DKDVVVGNALIDMYAKCGSIKNA 398

Query: 240 ETLIENADCRHDSSLWEVLL 259
             + +    R + S W  ++
Sbjct: 399 RLVFDMLSERDEIS-WNAMI 417



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 145/295 (49%), Gaps = 8/295 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +HA +  LG   N  V ++L+D Y  CG V+ + + FD +  K+ VS + ++  Y +   
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122

Query: 68  FESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
           F+  +++F EM  +      F+F  VL+AC GL A  +GK VH   ++     D+ +   
Sbjct: 123 FQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVG 182

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L+DLY K G  +   ++F +MP  ++I W+ MIS +AQ+ +  EA+ +F  M      P+
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPN 242

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
             +F  VL +C+ +  +  G++    + K   +   +   N ++D+  + G L+ +  L 
Sbjct: 243 QFTFASVLQSCASIENLQLGKQVHCHVLK-VGLDGNVFVSNALMDVYAKCGRLDNSMKLF 301

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
                R++ + W  ++       +   A  + K ++E +     S V   +V RA
Sbjct: 302 MELPNRNEVT-WNTMIVGYVQSGDGDKALSLYKNMLECQ--VQASEVTYSSVLRA 353



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 47  MLKKNSVSSSALLQGYCQTGDFESVI----RIFREMEEIDLFSFGIVLRACAGLAALRLG 102
           M  +N+VS   L+QGY Q+   + V+    R+ RE  E++ F F  +L+    +    L 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
             +H    +     +  + +AL+D YA CG V+ A Q F  +  +++++W  M++ +A+N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
            R +++L++F +M   G  P+H +F GVL AC
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKAC 152


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  273 bits (698), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 206/333 (61%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VHA +I   L  N  V ++L+DMY KC  ++++   F+++  ++  + + ++  Y Q
Sbjct: 535 GRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQ 594

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           T   E  +  FR+M++     + F+    L  C+ LA+L  G+++H    +     D+ +
Sbjct: 595 TNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFV 654

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVD+YAKCGC++ A  +F  +  R+ I WN++I G+AQNG+G +AL  F  M + G 
Sbjct: 655 GSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGI 714

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            PD V+F G+LSACSH GL++ G++HF SM +++ I P ++H  CMVD+LGR G  +E E
Sbjct: 715 SPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELE 774

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I+      ++ +WE +LGA     N  + E+ A K+ EL+P+   SY+LL N++   G
Sbjct: 775 DFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEG 834

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           RW+D  ++R+LM   GVKK PG SW+EAN +++
Sbjct: 835 RWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVH 867



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 143/262 (54%), Gaps = 6/262 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +HA V   G   +V V ++LV MY K G V +  ++++ M+ ++ +S +A L G
Sbjct: 431 LQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSG 490

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G ++  + IF  M E     ++++F  +L +C+ L  +  G++VH   I+     +
Sbjct: 491 LHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDN 550

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+D+YAKC  ++ A   F ++ VR+L TW  +I+ +AQ  +GE+AL  F  M +
Sbjct: 551 NFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQ 610

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+  +  G LS CS +  ++ G++  + + K   +       + +VD+  + G +E
Sbjct: 611 EGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVG-SALVDMYAKCGCME 669

Query: 238 EAETLIENADCRHDSSLWEVLL 259
           EAE L E A  R D+  W  ++
Sbjct: 670 EAEALFE-ALIRRDTIAWNTII 690



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 136/248 (54%), Gaps = 5/248 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++HA+   LGL  ++ V S+LVD+Y KCG ++ + ++F  M ++N V+ + LL G
Sbjct: 229 LDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNG 288

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q GD   V+++F  M E+D+    F+   VL+ CA    L+ G+ +H   I+     +
Sbjct: 289 YAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGN 348

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I   LVD+Y+KCG    A  +F  +   +++ W+++I+   Q G+ EE++++F  M  
Sbjct: 349 EFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL 408

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G T P+  +   +LSA ++ G +  G+   A + K Y  +  +   N +V +  + G + 
Sbjct: 409 GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK-YGFETDVAVSNALVTMYMKNGCVH 467

Query: 238 EAETLIEN 245
           +   L E+
Sbjct: 468 DGTKLYES 475



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 17/291 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LKQG+ +H+ +I  G  GN  +   LVDMY KCGL  ++  VF  + K + V  SAL+  
Sbjct: 330 LKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITC 389

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  I++F  M   D     ++   +L A      L+ G+ +H    +     D
Sbjct: 390 LDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETD 449

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +ALV +Y K GCV    +++  M  R+LI+WN+ +SG    G  +  L IF  M E
Sbjct: 450 VAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLE 509

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN----CMVDLLGRA 233
            G  P+  +FI +L +CS +  +  GR+  A +     IK +++  N     ++D+  + 
Sbjct: 510 EGFIPNMYTFISILGSCSCLFDVHYGRQVHAHI-----IKNQLDDNNFVCTALIDMYAKC 564

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
             LE+A+        R D   W V++   T +   +  E+      +++ +
Sbjct: 565 MYLEDADVAFNRLSVR-DLFTWTVII---TNYAQTNQGEKALNYFRQMQQE 611



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 4/204 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            K +H  ++   +  +  +  SLV++Y KC     +  V  KM  ++ VS +AL+QG   
Sbjct: 131 AKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVA 190

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     I +F+EM+   +    F+    L+AC+   AL LGK++H Q  +     D+ +
Sbjct: 191 EGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFV 250

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVDLYAKCG ++ A ++F+ MP +N +TWN +++G+AQ G     L++F  M E   
Sbjct: 251 GSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDV 310

Query: 181 KPDHVSFIGVLSACSHMGLIDRGR 204
           K +  +   VL  C++   + +G+
Sbjct: 311 KCNEFTLTTVLKGCANSKNLKQGQ 334



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 98/203 (48%), Gaps = 6/203 (2%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  +LR CA   +L + K +H   ++     D  +  +LV++YAKC    +A  +  +MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R++++W ++I G    G   +++ +F +M   G  P+  +    L ACS    +D G++
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 206 HFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
             A   + +++   ++ +  + +VDL  + G +E A  +      ++D + W VLL    
Sbjct: 235 MHA---QAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVT-WNVLLNGYA 290

Query: 264 TFRNAHVAERVAKKIMELKPDCH 286
              +     ++   +MEL   C+
Sbjct: 291 QRGDVTGVLKLFCSMMELDVKCN 313



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H+ V   G   ++ V S+LVDMY KCG ++E+  +F+ ++++++++ + ++ G
Sbjct: 633 LEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICG 692

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +  FR M +     D  +F  +L AC+    +  GKE      R  G   
Sbjct: 693 YAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISP 752

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMI 156
            +   A +VD+  + G  D       +M + +N + W +++
Sbjct: 753 TVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVL 793


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 206/333 (61%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VHA +I   L  N  V ++L+DMY KC  ++++   F+++  ++  + + ++  Y Q
Sbjct: 535 GRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQ 594

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           T   E  +  FR+M++     + F+    L  C+ LA+L  G+++H    +     D+ +
Sbjct: 595 TNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFV 654

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVD+YAKCGC++ A  +F  +  R+ I WN++I G+AQNG+G +AL  F  M + G 
Sbjct: 655 GSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGI 714

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            PD V+F G+LSACSH GL++ G++HF SM +++ I P ++H  CMVD+LGR G  +E E
Sbjct: 715 SPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELE 774

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I+      ++ +WE +LGA     N  + E+ A K+ EL+P+   SY+LL N++   G
Sbjct: 775 DFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEG 834

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           RW+D  ++R+LM   GVKK PG SW+EAN +++
Sbjct: 835 RWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVH 867



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 143/263 (54%), Gaps = 6/263 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            L+ G+ +HA V   G   +V V ++LV MY K G V +  ++++ M+ ++ +S +A L 
Sbjct: 430 NLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLS 489

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G    G ++  + IF  M E     ++++F  +L +C+ L  +  G++VH   I+     
Sbjct: 490 GLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDD 549

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + +AL+D+YAKC  ++ A   F ++ VR+L TW  +I+ +AQ  +GE+AL  F  M 
Sbjct: 550 NNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQ 609

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G KP+  +  G LS CS +  ++ G++  + + K   +       + +VD+  + G +
Sbjct: 610 QEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVG-SALVDMYAKCGCM 668

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           EEAE L E A  R D+  W  ++
Sbjct: 669 EEAEALFE-ALIRRDTIAWNTII 690



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 136/248 (54%), Gaps = 5/248 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++HA+   LGL  ++ V S+LVD+Y KCG ++ + ++F  M ++N V+ + LL G
Sbjct: 229 LDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNG 288

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q GD   V+++F  M E+D+    F+   VL+ CA    L+ G+ +H   I+     +
Sbjct: 289 YAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGN 348

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I   LVD+Y+KCG    A  +F  +   +++ W+++I+   Q G+ EE++++F  M  
Sbjct: 349 EFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL 408

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G T P+  +   +LSA ++ G +  G+   A + K Y  +  +   N +V +  + G + 
Sbjct: 409 GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK-YGFETDVAVSNALVTMYMKNGCVH 467

Query: 238 EAETLIEN 245
           +   L E+
Sbjct: 468 DGTKLYES 475



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 140/292 (47%), Gaps = 17/292 (5%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            LKQG+ +H+ +I  G  GN  +   LVDMY KCGL  ++  VF  + K + V  SAL+ 
Sbjct: 329 NLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALIT 388

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
              Q G  E  I++F  M   D     ++   +L A      L+ G+ +H    +     
Sbjct: 389 CLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFET 448

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV + +ALV +Y K GCV    +++  M  R+LI+WN+ +SG    G  +  L IF  M 
Sbjct: 449 DVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHML 508

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN----CMVDLLGR 232
           E G  P+  +FI +L +CS +  +  GR+  A +     IK +++  N     ++D+  +
Sbjct: 509 EEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHI-----IKNQLDDNNFVCTALIDMYAK 563

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
              LE+A+        R D   W V++   T +   +  E+      +++ +
Sbjct: 564 CMYLEDADVAFNRLSVR-DLFTWTVII---TNYAQTNQGEKALNYFRQMQQE 611



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 4/204 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            K +H  ++   +  +  +  SLV++Y KC     +  V  KM  ++ VS +AL+QG   
Sbjct: 131 AKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVA 190

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     I +F+EM+   +    F+    L+AC+   AL LGK++H Q  +     D+ +
Sbjct: 191 EGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFV 250

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVDLYAKCG ++ A ++F+ MP +N +TWN +++G+AQ G     L++F  M E   
Sbjct: 251 GSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDV 310

Query: 181 KPDHVSFIGVLSACSHMGLIDRGR 204
           K +  +   VL  C++   + +G+
Sbjct: 311 KCNEFTLTTVLKGCANSKNLKQGQ 334



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 98/203 (48%), Gaps = 6/203 (2%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  +LR CA   +L + K +H   ++     D  +  +LV++YAKC    +A  +  +MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R++++W ++I G    G   +++ +F +M   G  P+  +    L ACS    +D G++
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 206 HFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
             A   + +++   ++ +  + +VDL  + G +E A  +      ++D + W VLL    
Sbjct: 235 MHA---QAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVT-WNVLLNGYA 290

Query: 264 TFRNAHVAERVAKKIMELKPDCH 286
              +     ++   +MEL   C+
Sbjct: 291 QRGDVTGVLKLFCSMMELDVKCN 313



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H+ V   G   ++ V S+LVDMY KCG ++E+  +F+ ++++++++ + ++ G
Sbjct: 633 LEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICG 692

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +  FR M +     D  +F  +L AC+    +  GKE      R  G   
Sbjct: 693 YAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISP 752

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMI 156
            +   A +VD+  + G  D       +M + +N + W +++
Sbjct: 753 TVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVL 793


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 138/336 (41%), Positives = 212/336 (63%), Gaps = 6/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +GKE+H   I  GL   V V SSL+DMY KC  V +S+RVF  + +++ +S ++++ G
Sbjct: 316 ISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAG 375

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
             Q G F+  ++ FR+M    +    +SF  ++ ACA L  L LGK++H  YI R+G  +
Sbjct: 376 CVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH-GYITRNGFDE 434

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ I S+LVD+YAKCG +  A QIF +M +R++++W +MI G A +G   +A+ +F+ M 
Sbjct: 435 NIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMK 494

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P++V+F+ VL+ACSH GL+D   K+F SMT ++ I P +EHY  + DLLGRAG L
Sbjct: 495 TEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRL 554

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA   I         S+W  LL AC   +N  +AE+VA +I+E+ P    +Y+LL N+Y
Sbjct: 555 EEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIY 614

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            A  RW +A K R  ++ +G++K P  SWIE  +K+
Sbjct: 615 SAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKV 650



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 6/230 (2%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRA 92
           VD   ++F+ M +K+ VS + ++ G  + G +   + + REM     + D F+   VL  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
            A    +  GKE+H   IR+    +V + S+L+D+YAKC  V  ++++F  +  R+ I+W
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISW 369

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           NS+I+G  QNG  +E L+ F  M     KP   SF  ++ AC+H+  +  G++    +T+
Sbjct: 370 NSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 429

Query: 213 EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
                  I   + +VD+  + G +  A  + +    R D   W  ++  C
Sbjct: 430 N-GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGC 477



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 5/131 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           Q +++HA+V+      ++   S L+ +Y    L+ +S R+F+ +    +++  ++++ Y 
Sbjct: 26  QAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYT 84

Query: 64  QTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             G     +  F  M    L+     F  VL+ACA L  L LG+ +H   IR     D+ 
Sbjct: 85  SHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLY 144

Query: 120 IESALVDLYAK 130
             +AL+++Y+K
Sbjct: 145 TGNALMNMYSK 155


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 134/337 (39%), Positives = 216/337 (64%), Gaps = 7/337 (2%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALL 59
           K   +VHAK++  GL  +  V ++++  Y +CG ++++ RVFD  ++    + VS +++L
Sbjct: 218 KLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSIL 277

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G+ Q+G  E  ++ F  M      ID ++F  VLR+C+ LA L+LG++VH   ++    
Sbjct: 278 TGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFE 337

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +  + S+L+ +Y+KCG ++ A + F   P  + I WNS+I G+AQ+GRG+ AL +F  M
Sbjct: 338 PNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLM 397

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            +   K DH++F+ VL+ACSH+GL++ G     SM  +Y I P++EHY CM+DLLGRAG 
Sbjct: 398 KDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGR 457

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L+EA+ LIE      D+ +W+ LLGAC T  +  +A +VA  ++EL+P+ H +YVLL ++
Sbjct: 458 LDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSM 517

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +  + RWN+   I+ LMK  GVKK+PG SWIE  +++
Sbjct: 518 FGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEV 554



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 142/262 (54%), Gaps = 9/262 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH+ ++ +G  GNV   S+L+DMY KC  V+++  VF  +  +NSV+ +AL+ GY Q
Sbjct: 119 GQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQ 178

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD  +   +   ME    EID  +F  +L         +L  +VH + ++     D  +
Sbjct: 179 VGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTV 238

Query: 121 ESALVDLYAKCGCVDFAHQIF-LQMPVRNL--ITWNSMISGFAQNGRGEEALRIFDDMTE 177
            +A++  Y++CG ++ A ++F   +  R+L  ++WNS+++GF+Q+G  E+AL+ F++M  
Sbjct: 239 CNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRS 298

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
                DH +F  VL +CS +  +  G++    + K    +P     + ++ +  + G++E
Sbjct: 299 QYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKS-GFEPNGFVASSLIFMYSKCGVIE 357

Query: 238 EAETLIENADCRHDSSLWEVLL 259
           +A     +A  +  S  W  L+
Sbjct: 358 DARKSF-DATPKDSSIAWNSLI 378



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 150/302 (49%), Gaps = 19/302 (6%)

Query: 9   HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF 68
           H   I  G   ++   ++++  Y KCG +  + ++F +  ++++VS + ++ G+   G+F
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 69  ESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           E+ +   + M+     +D +SFG +L+  A +  + +G++VH   ++     +V   SAL
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSAL 141

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D+YAKC  V+ A ++F  + +RN +TWN++ISG+AQ G    A  + D M   G + D 
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDD 201

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL-- 242
            +F  +L+      L     +  A + K + +       N ++      G +E+AE +  
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVK-HGLASDTTVCNAIITAYSECGSIEDAERVFD 260

Query: 243 --IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN-VYRAV 299
             IE  D  H S  W  +L   T F  + ++E   K    ++      YV++D+  + AV
Sbjct: 261 GAIETRDLDHVS--WNSIL---TGFSQSGLSEDALKFFENMRSQ----YVVIDHYAFSAV 311

Query: 300 GR 301
            R
Sbjct: 312 LR 313



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 9/203 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VH  V+  G   N  V SSL+ MY KCG+++++ + FD   K +S++ ++L+ G
Sbjct: 321 LQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFG 380

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  + +F  M++    +D  +F  VL AC+ +  +  G           G   
Sbjct: 381 YAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPP 440

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
            +   A ++DL  + G +D A  +   MP   + + W +++      G  E A ++   +
Sbjct: 441 RMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHL 500

Query: 176 TEGGTKP-DHVSFIGVLSACSHM 197
            E   +P +H +++ + S   H+
Sbjct: 501 LE--LEPEEHCTYVLLSSMFGHL 521


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/333 (38%), Positives = 207/333 (62%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + QG ++HA+V   G   +V + + LV +Y +CG+  E+   F+ +  K  ++ + L+ G
Sbjct: 462 VHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISG 521

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G +E  +++F +M++     ++F+F   + A A LA ++ GK++H + I+     +
Sbjct: 522 FAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSE 581

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I +AL+ LY KCG ++ A   F +M  RN ++WN++I+  +Q+GRG EAL +FD M +
Sbjct: 582 TEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQ 641

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP  V+F+GVL+ACSH+GL++ G  +F SM+ E+ I P+ +HY C+VD+LGRAG L+
Sbjct: 642 QGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLD 701

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A+  +E      DS +W  LL AC   +N  + E  AK ++EL+P    SYVLL N Y 
Sbjct: 702 RAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYA 761

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
             G+W    +IR +MK  GV+K PG+SWIE  +
Sbjct: 762 VTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKN 794



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 147/265 (55%), Gaps = 16/265 (6%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
            E+HAK I  GL G  ++ + L+D+Y K G V  + RVF+++  +++VS  A+L GY Q 
Sbjct: 62  PEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQN 121

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  E  +R++REM    +    +    +L AC      +LG+ +H Q  ++    +  + 
Sbjct: 122 GLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVG 181

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +AL+ LY +C     A ++F  M   + +T+N++ISG AQ G G+ AL IFD+M   G  
Sbjct: 182 NALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLS 241

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHF-----ASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           PD V+   +L+ACS +G + +G++       A M+ +Y ++        ++DL  ++G +
Sbjct: 242 PDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIME------GSLLDLYVKSGDI 295

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           EEA  + ++ D R +  LW ++L A
Sbjct: 296 EEALQIFDSGD-RTNVVLWNLMLVA 319



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 144/264 (54%), Gaps = 8/264 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+  I  G   ++ V   L+DMY K G +D++ R+ D + +K+ VS ++++ GY Q
Sbjct: 364 GEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQ 423

Query: 65  TGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               +  +  F+EM+   ++   I     + ACAG+ A+  G ++H +        DV I
Sbjct: 424 HEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSI 483

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + LV LYA+CG    A   F  +  +  ITWN +ISGFAQ+G  EEAL++F  M + G 
Sbjct: 484 WNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGA 543

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEA 239
           K +  +F+  +SA +++  I +G++  A + K  Y  + +I   N ++ L G+ G +E+A
Sbjct: 544 KYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEIS--NALISLYGKCGSIEDA 601

Query: 240 ETLIENADCRHDSSLWEVLLGACT 263
           +        R++ S W  ++  C+
Sbjct: 602 KMDFFEMTKRNEVS-WNTIITCCS 624



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 145/285 (50%), Gaps = 11/285 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++H+ ++  G+  + ++E SL+D+Y K G ++E+ ++FD   + N V  + +L  
Sbjct: 260 LRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVA 319

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  D      IF  M    +    F++  +LR C     + LG+++H   I+     D
Sbjct: 320 YGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSD 379

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + +   L+D+Y+K G +D A +I   +  +++++W SMI+G+ Q+   +EAL  F +M  
Sbjct: 380 MYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQA 439

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G  PD++     +SAC+ +  + +G + H       Y     I  +N +V L  R G+ 
Sbjct: 440 CGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSI--WNGLVYLYARCGIS 497

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281
           +EA +  E  + + +   W    G  + F  + + E   K  M++
Sbjct: 498 KEAFSSFEAIEHK-EGITWN---GLISGFAQSGLYEEALKVFMKM 538



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 125/247 (50%), Gaps = 5/247 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            + G+ +H +V   G      V ++L+ +Y +C     + RVF  ML  +SV+ + L+ G
Sbjct: 159 FQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISG 218

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +  + IF EM+      D  +   +L AC+ +  LR GK++H   ++     D
Sbjct: 219 HAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLD 278

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            I+E +L+DLY K G ++ A QIF      N++ WN M+  + Q     ++  IF  M  
Sbjct: 279 YIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLA 338

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+  ++  +L  C+H G I  G +   S+T +   +  +     ++D+  + G L+
Sbjct: 339 AGVRPNKFTYPCMLRTCTHTGEIGLGEQ-IHSLTIKNGFQSDMYVSGVLIDMYSKYGWLD 397

Query: 238 EAETLIE 244
           +A+ +++
Sbjct: 398 KAQRILD 404


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 134/330 (40%), Positives = 209/330 (63%), Gaps = 6/330 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +H  +I  GL  +V V S+L+D++ K G  +++  VFD+M+  +++  ++++ G+ Q   
Sbjct: 181 LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 240

Query: 68  FESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            +  + +F+ M+         +   VLRAC GLA L LG + H   ++    +D+I+ +A
Sbjct: 241 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNA 298

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           LVD+Y KCG ++ A ++F QM  R++ITW++MISG AQNG  +EAL++F+ M   GTKP+
Sbjct: 299 LVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPN 358

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
           +++ +GVL ACSH GL++ G  +F SM K Y I P  EHY CM+DLLG+AG L++A  L+
Sbjct: 359 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
              +C  D+  W  LLGAC   RN  +AE  AKK++ L P+   +Y LL N+Y    +W+
Sbjct: 419 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWD 478

Query: 304 DAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              +IRT M+  G+KK PG SWIE N +++
Sbjct: 479 SVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 127/239 (53%), Gaps = 11/239 (4%)

Query: 27  LVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ----TGDFESVIRIFREMEEID 82
           L++MY K  L++++H++FD+M ++N +S + ++  Y +        E ++ + R+    +
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPN 161

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
           ++++  VLR+C G++ +R+   +HC  I+     DV + SAL+D++AK G  + A  +F 
Sbjct: 162 VYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFD 218

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           +M   + I WNS+I GFAQN R + AL +F  M   G   +  +   VL AC+ + L++ 
Sbjct: 219 EMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 278

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           G +    + K       +   N +VD+  + G LE+A  +      R D   W  ++  
Sbjct: 279 GMQAHVHIVK---YDQDLILNNALVDMYCKCGSLEDALRVFNQMKER-DVITWSTMISG 333



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQI 140
           D  ++  +++ C    A+  G  + C+++  +G + ++ + + L+++Y K   ++ AHQ+
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLI-CRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQL 118

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F QMP RN+I+W +MIS +++    ++AL +   M     +P+  ++  VL +C+ M  +
Sbjct: 119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              R     + KE  ++  +   + ++D+  + G  E+A ++ +      D+ +W  ++G
Sbjct: 179 ---RMLHCGIIKE-GLESDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIG 233

Query: 261 ACTTFRNAHVAERVAKKI 278
                  + VA  + K++
Sbjct: 234 GFAQNSRSDVALELFKRM 251


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 138/336 (41%), Positives = 202/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K+G  VH   I  G   +V V SSL+DMY  C  +D S +VFD     ++V  +++L G
Sbjct: 186 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 245

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + IFR M +  +     +F  ++ A   L+ LRLGK++H   IR     +
Sbjct: 246 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDN 305

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I S+L+D+Y KCG VD A ++F  +   ++++W +MI G+A +G   EA  +F+ M  
Sbjct: 306 IFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMEL 365

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  KP+H++F+ VL+ACSH GL+D G K+F SM+ +Y   P +EH   + D LGRAG L+
Sbjct: 366 GNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLD 425

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I     +  SS+W  LL AC   +N  +AE VAKKI EL+P    S+V+L N+Y 
Sbjct: 426 EAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYS 485

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GRWN+A ++R  M+  G+KK P  SWIE  +KL+
Sbjct: 486 ASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLH 521



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 107/197 (54%), Gaps = 5/197 (2%)

Query: 42  RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLA 97
           +VFD+ML++++VS + L+ G  +    +  + + REM       D F+   VL   A  A
Sbjct: 125 KVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECA 184

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
            ++ G  VH   I+     DV + S+L+D+YA C  +D++ ++F      + + WNSM++
Sbjct: 185 DIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLA 244

Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
           G+AQNG  EEAL IF  M + G +P  V+F  ++ A  ++ L+  G++  A + +  R  
Sbjct: 245 GYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRA-RFN 303

Query: 218 PKIEHYNCMVDLLGRAG 234
             I   + ++D+  + G
Sbjct: 304 DNIFISSSLIDMYCKCG 320



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 32/201 (15%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK-------------- 130
           S    L++CAGL    L   +H   IR     D    +AL++L  K              
Sbjct: 51  SLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPS 110

Query: 131 ------CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
                     +   ++F +M  R+ ++WN++I G A++ R +EAL +  +M   G  PD 
Sbjct: 111 GEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDT 170

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAE 240
            +   VL   +    I RG      +   Y IK   ++     + ++D+      ++ + 
Sbjct: 171 FTLSTVLPIFAECADIKRGM-----VVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSM 225

Query: 241 TLIEN-ADCRHDSSLWEVLLG 260
            + ++ +DC  D+ LW  +L 
Sbjct: 226 KVFDSFSDC--DAVLWNSMLA 244


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/329 (41%), Positives = 210/329 (63%), Gaps = 7/329 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQGYC 63
           G+++HA ++   +  +  +E++L+  YGKC  +++   +F +M  +++ VS +A++ GY 
Sbjct: 577 GRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYI 636

Query: 64  QTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             G     + +   M    + +D F+   VL ACA +A L  G EVH   IR     +V+
Sbjct: 637 HNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVV 696

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + SALVD+YAKCG +D+A + F  MPVRN+ +WNSMISG+A++G G +AL++F  M + G
Sbjct: 697 VGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHG 756

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PDHV+F+GVLSACSH+GL+D G +HF SM + Y + P+IEH++CMVDLLGRAG +++ 
Sbjct: 757 QLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKL 816

Query: 240 ETLIENADCRHDSSLWEVLLGAC--TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E  I+      ++ +W  +LGAC     RN  +  R AK ++EL+P   ++YVLL N++ 
Sbjct: 817 EEFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHA 876

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           A G+W D  + R  M+ + VKK  G SW+
Sbjct: 877 AGGKWEDVEEARLAMRNAEVKKEAGCSWV 905



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 138/268 (51%), Gaps = 12/268 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++ A++       ++ V S+LV  + + GL+D +  +F++M  +N+V+ + L+ G  + 
Sbjct: 270 EQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQ 329

Query: 66  GDFESVIRIFREME---EIDLFSFGIVLRACAGLAAL----RLGKEVHCQYIRRSGCKDV 118
              E   +IF+EM+   EI+  S+ ++L A    + L    R G+EVH  Y+ R+   DV
Sbjct: 330 HQGEEAAKIFKEMKDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHA-YLIRNALVDV 388

Query: 119 --IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             +I +ALV+LYAKC  +D A  IF  MP ++ ++WNS+ISG   N R EEA+  F  M 
Sbjct: 389 WILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMR 448

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P   S I  LS+C+ +G I  G++      K   +   +   N ++ L      +
Sbjct: 449 RNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIK-CGLDLDVSVSNALLTLYAETDCM 507

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTT 264
           EE + +       +D   W   +GA  T
Sbjct: 508 EEYQKVFFLMP-EYDQVSWNSFIGALAT 534



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 138/264 (52%), Gaps = 7/264 (2%)

Query: 3   KQGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++G+EVHA +I   L    +++ ++LV++Y KC  +D +  +F  M  K++VS ++++ G
Sbjct: 371 RKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISG 430

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                 FE  +  F  M    +    FS    L +CA L  + LG+++H + I+     D
Sbjct: 431 LDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLD 490

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE-EALRIFDDMT 176
           V + +AL+ LYA+  C++   ++F  MP  + ++WNS I   A +     +A++ F +M 
Sbjct: 491 VSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMM 550

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G KP+ V+FI +LSA S + L++ GR+  A + K + +       N ++   G+   +
Sbjct: 551 QAGWKPNRVTFINILSAVSSLSLLELGRQIHALILK-HSVADDNAIENTLLAFYGKCEQM 609

Query: 237 EEAETLIENADCRHDSSLWEVLLG 260
           E+ E +      R D   W  ++ 
Sbjct: 610 EDCEIIFSRMSERRDEVSWNAMIS 633



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 150/297 (50%), Gaps = 24/297 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++   ++H ++   GL  +V   ++LV+++ + G +  + ++FD+M +KN VS S L+ G
Sbjct: 55  VEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSG 114

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAA--LRLGKEVHCQYIRRSGC 115
           Y Q G  +    +FR +    L    ++ G  LRAC  L    L+LG E+H    +    
Sbjct: 115 YAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYA 174

Query: 116 KDVIIESALVDLYAKCGC-VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            D+++ + L+ +Y+ C   +D A ++F ++ ++   +WNS+IS + + G    A ++F  
Sbjct: 175 SDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSS 234

Query: 175 M----TEGGTKPDHVSFIGVLS-ACSHMGLIDRG----RKHFASMTKEYRIKPKIEHYNC 225
           M    TE   +P+  +F  +++ ACS   L+D G     +  A + K   +K  +   + 
Sbjct: 235 MQREATELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEKSSFVK-DLYVGSA 290

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
           +V    R GL++ A+ + E  D R+  ++  +++G        H  E  AK   E+K
Sbjct: 291 LVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVG----LARQHQGEEAAKIFKEMK 343



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 135/258 (52%), Gaps = 16/258 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQ 60
           LK G E+H  +       ++V+ + L+ MY  C   +D++ RVF+++  K S S ++++ 
Sbjct: 158 LKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIIS 217

Query: 61  GYCQTGDFESVIRIF----REMEEIDL----FSF-GIVLRACAGL-AALRLGKEVHCQYI 110
            YC+ GD  S  ++F    RE  E++     ++F  +V  AC+ +   L L +++  +  
Sbjct: 218 VYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIE 277

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
           + S  KD+ + SALV  +A+ G +D A  IF QM  RN +T N ++ G A+  +GEEA +
Sbjct: 278 KSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAK 337

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH----FASMTKEYRIKPKIEHYNCM 226
           IF +M +   + +  S+  +LSA +    +  G++      A + +   +   I   N +
Sbjct: 338 IFKEMKD-LVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNAL 396

Query: 227 VDLLGRAGLLEEAETLIE 244
           V+L  +   ++ A ++ +
Sbjct: 397 VNLYAKCNAIDNARSIFQ 414


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 134/330 (40%), Positives = 209/330 (63%), Gaps = 6/330 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +H  +I  GL  +V V S+L+D++ K G  +++  VFD+M+  +++  ++++ G+ Q   
Sbjct: 181 LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 240

Query: 68  FESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            +  + +F+ M+         +   VLRAC GLA L LG + H   ++    +D+I+ +A
Sbjct: 241 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNA 298

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           LVD+Y KCG ++ A ++F QM  R++ITW++MISG AQNG  +EAL++F+ M   GTKP+
Sbjct: 299 LVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPN 358

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
           +++ +GVL ACSH GL++ G  +F SM K Y I P  EHY CM+DLLG+AG L++A  L+
Sbjct: 359 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
              +C  D+  W  LLGAC   RN  +AE  AKK++ L P+   +Y LL N+Y    +W+
Sbjct: 419 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWD 478

Query: 304 DAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              +IRT M+  G+KK PG SWIE N +++
Sbjct: 479 SVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 121/217 (55%), Gaps = 10/217 (4%)

Query: 27  LVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ----TGDFESVIRIFREMEEID 82
           L++MY K  L++++H++FD+M ++N +S + ++  Y +        E ++ + R+    +
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPN 161

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
           ++++  VLR+C G++ +R+   +HC  I+     DV + SAL+D++AK G  + A  +F 
Sbjct: 162 VYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFD 218

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           +M   + I WNS+I GFAQN R + AL +F  M   G   +  +   VL AC+ + L++ 
Sbjct: 219 EMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 278

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           G +    + K       +   N +VD+  + G LE+A
Sbjct: 279 GMQAHVHIVK---YDQDLILNNALVDMYCKCGSLEDA 312



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQI 140
           D  ++  +++ C    A+  G  + C+++  +G + ++ + + L+++Y K   ++ AHQ+
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLI-CRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQL 118

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F QMP RN+I+W +MIS +++    ++AL +   M     +P+  ++  VL +C+ M  +
Sbjct: 119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              R     + KE  ++  +   + ++D+  + G  E+A ++ +      D+ +W  ++G
Sbjct: 179 ---RMLHCGIIKE-GLESDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIG 233

Query: 261 ACTTFRNAHVAERVAKKI 278
                  + VA  + K++
Sbjct: 234 GFAQNSRSDVALELFKRM 251


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 138/336 (41%), Positives = 202/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K+G  VH   I  G   +V V SSL+DMY  C  +D S +VFD     ++V  +++L G
Sbjct: 503 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 562

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + IFR M +  +     +F  ++ A   L+ LRLGK++H   IR     +
Sbjct: 563 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDN 622

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I S+L+D+Y KCG VD A ++F  +   ++++W +MI G+A +G   EA  +F+ M  
Sbjct: 623 IFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMEL 682

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  KP+H++F+ VL+ACSH GL+D G K+F SM+ +Y   P +EH   + D LGRAG L+
Sbjct: 683 GNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLD 742

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I     +  SS+W  LL AC   +N  +AE VAKKI EL+P    S+V+L N+Y 
Sbjct: 743 EAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYS 802

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GRWN+A ++R  M+  G+KK P  SWIE  +KL+
Sbjct: 803 ASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLH 838



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 107/197 (54%), Gaps = 5/197 (2%)

Query: 42  RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLA 97
           +VFD+ML++++VS + L+ G  +    +  + + REM       D F+   VL   A  A
Sbjct: 442 KVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECA 501

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
            ++ G  VH   I+     DV + S+L+D+YA C  +D++ ++F      + + WNSM++
Sbjct: 502 DIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLA 561

Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
           G+AQNG  EEAL IF  M + G +P  V+F  ++ A  ++ L+  G++  A + +  R  
Sbjct: 562 GYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRA-RFN 620

Query: 218 PKIEHYNCMVDLLGRAG 234
             I   + ++D+  + G
Sbjct: 621 DNIFISSSLIDMYCKCG 637



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 20/139 (14%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK-------------- 130
           S    L++CAGL    L   +H   IR     D    +AL++L  K              
Sbjct: 368 SLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPS 427

Query: 131 ------CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
                     +   ++F +M  R+ ++WN++I G A++ R +EAL +  +M   G  PD 
Sbjct: 428 GEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDT 487

Query: 185 VSFIGVLSACSHMGLIDRG 203
            +   VL   +    I RG
Sbjct: 488 FTLSTVLPIFAECADIKRG 506


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/326 (39%), Positives = 211/326 (64%), Gaps = 3/326 (0%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA V   GL  +  V +S++DMY +C  + ++ R F ++ +KN ++ + L+ GY +
Sbjct: 230 GKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYER 289

Query: 65  TGDFESVIRIFR---EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           +   ES+   F+   E  + + F+F  +  ACA LA L  G++VH   +RR   K+V + 
Sbjct: 290 SDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALI 349

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++L+D+YAKCG +  +H++F  MP R+L++W +M+ G+  +G G+EA+++FD+M + G +
Sbjct: 350 NSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQ 409

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD + F+GVL  CSH GL+D+G K+F SM ++Y I P  E Y C+VDLLGRAG +EEA  
Sbjct: 410 PDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQ 469

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L+EN     D S+W  LLGAC  ++ +++    A+++++ +P+   +Y+LL  +Y A G+
Sbjct: 470 LVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGK 529

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIE 327
           W +  K+R LMK    KK  GKSWIE
Sbjct: 530 WGEFAKMRKLMKGMNKKKEVGKSWIE 555



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 138/264 (52%), Gaps = 7/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYG-KCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L  G   H+     G+  +V V+++L+DMY   C  +D++  VF+ +  K +VS + L+ 
Sbjct: 125 LSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIA 184

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+   GD  S +  FR+M   D+    FSF I  RACA +++   GK++H    +     
Sbjct: 185 GFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHC 244

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + ++++D+Y +C  +  A + F ++  +NLITWN++I+G+ +     E+L +F  M 
Sbjct: 245 DAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMG 303

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+  +F  + +AC+++ ++  G++    + +       +   N ++D+  + G +
Sbjct: 304 SEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRR-GFDKNVALINSLIDMYAKCGSI 362

Query: 237 EEAETLIENADCRHDSSLWEVLLG 260
            ++  L  +   R   S   +++G
Sbjct: 363 SDSHKLFCDMPGRDLVSWTTMMIG 386



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
           G  V  ++L+  Y   GL  E+  +F+++ +++ V+ +A++ G+     +     +F EM
Sbjct: 41  GPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEM 100

Query: 79  ----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLY-AKCGC 133
                + + F+   VL+AC G+ AL  G   H    +    + V +++AL+D+Y A C  
Sbjct: 101 LRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCAT 160

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           +D A  +F  +P++  ++W ++I+GF   G G   L  F  M      P+  SF     A
Sbjct: 161 MDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARA 220

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           C+ +     G++  A++TK Y +       N ++D+  R   L +A+
Sbjct: 221 CASISSYSCGKQIHAAVTK-YGLHCDAPVMNSILDMYCRCNYLCDAK 266



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 5/149 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH  ++  G   NV + +SL+DMY KCG + +SH++F  M  ++ VS + ++ G
Sbjct: 327 LSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIG 386

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           Y   G  +  +++F EM     + D   F  VL  C+    +  G +     +       
Sbjct: 387 YGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINP 446

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           D  I   +VDL  + G V+ A Q+   MP
Sbjct: 447 DQEIYRCVVDLLGRAGRVEEAFQLVENMP 475


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/373 (38%), Positives = 219/373 (58%), Gaps = 42/373 (11%)

Query: 3   KQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++G++VH +++       ++V+ ++LVDMY KCG   E+  VFD+M  ++ VS ++++ G
Sbjct: 265 REGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITG 324

Query: 62  YCQT---GDFESV--------------------------------IRIFREMEEIDLFSF 86
           Y ++   GD ++V                                +R+ RE      +++
Sbjct: 325 YAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTY 384

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRR-----SGCK-DVIIESALVDLYAKCGCVDFAHQI 140
           G VL ACA LA L+LG++ H   ++      SG + DV + ++LVD+Y K G +    ++
Sbjct: 385 GNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKV 444

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F +M  R+ ++WN+MI G+AQNGR ++AL +F+ M     +PD V+ IGVLSAC H GL+
Sbjct: 445 FERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLV 504

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             GR++F SMT+++ I P  +HY CM+DLLGRAG L+E E LIEN     D+ LW  LLG
Sbjct: 505 KEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLG 564

Query: 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
           AC   +N  + E  A K+ EL PD    YVLL N+Y  +G+W D F++R  MK+ GV K 
Sbjct: 565 ACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQ 624

Query: 321 PGKSWIEANSKLN 333
           PG SWIE   K+N
Sbjct: 625 PGCSWIEIGRKVN 637



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 152/305 (49%), Gaps = 41/305 (13%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           + G++VHA V       +V + ++LVDMY KC   +E+ +VFD M ++N VS ++L+  Y
Sbjct: 164 RTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCY 223

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-D 117
            Q G  +  + +F  M +     D  +   V+ ACAGLAA R G++VH + ++    + D
Sbjct: 224 EQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFRED 283

Query: 118 VIIESALVDLYAKCG-------------------------------CVDFAHQIFLQMPV 146
           +++ +ALVD+YAKCG                                V  A  +FLQM  
Sbjct: 284 MVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVE 343

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +N++ WN +I+ +A N   EEALR+F  +      P H ++  VL+AC+++  +  G++ 
Sbjct: 344 KNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQA 403

Query: 207 FASMTKE---YRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
              + KE   +   P+ + +  N +VD+  + G + +   + E    R + S   +++G 
Sbjct: 404 HVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGY 463

Query: 262 CTTFR 266
               R
Sbjct: 464 AQNGR 468



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 126/268 (47%), Gaps = 35/268 (13%)

Query: 17  LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFR 76
             G   + ++L+  Y + G + ++ RVFD M  +N+ S +ALL    + G  +  + +F 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 77  EMEEID-----------------------------------LFSFGIVLRACAGLAALRL 101
            + + D                                    +SF   L ACA   A R 
Sbjct: 106 AIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRT 165

Query: 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
           G++VH    + S   DV I +ALVD+YAKC   + A ++F  MP RN+++WNS+I+ + Q
Sbjct: 166 GEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQ 225

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
           NG  +EAL +F  M + G  PD V+   V+SAC+ +     GR+    M K  R +  + 
Sbjct: 226 NGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMV 285

Query: 222 HYNCMVDLLGRAGLLEEAETLIENADCR 249
             N +VD+  + G   EA+ + +    R
Sbjct: 286 LNNALVDMYAKCGRTWEAKCVFDRMAIR 313


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/326 (39%), Positives = 211/326 (64%), Gaps = 3/326 (0%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA V   GL  +  V +S++DMY +C  + ++ R F ++ +KN ++ + L+ GY +
Sbjct: 230 GKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYER 289

Query: 65  TGDFESVIRIFR---EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           +   ES+   F+   E  + + F+F  +  ACA LA L  G++VH   +RR   K+V + 
Sbjct: 290 SDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALI 349

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++L+D+YAKCG +  +H++F  MP R+L++W +M+ G+  +G G+EA+++FD+M + G +
Sbjct: 350 NSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQ 409

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD + F+GVL  CSH GL+D+G K+F SM ++Y I P  E Y C+VDLLGRAG +EEA  
Sbjct: 410 PDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQ 469

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L+EN     D S+W  LLGAC  ++ +++    A+++++ +P+   +Y+LL  +Y A G+
Sbjct: 470 LVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGK 529

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIE 327
           W +  K+R LMK    KK  GKSWIE
Sbjct: 530 WGEFAKMRKLMKGMNKKKEVGKSWIE 555



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 138/264 (52%), Gaps = 7/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYG-KCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L  G   H+     G+  +V V+++L+DMY   C  +D++  VF+ +  K +VS + L+ 
Sbjct: 125 LSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIA 184

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+   GD  S +  FR+M   D+    FSF I  RACA +++   GK++H    +     
Sbjct: 185 GFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHC 244

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + ++++D+Y +C  +  A + F ++  +NLITWN++I+G+ +     E+L +F  M 
Sbjct: 245 DAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMG 303

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+  +F  + +AC+++ ++  G++    + +       +   N ++D+  + G +
Sbjct: 304 SEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRR-GFDKNVALINSLIDMYAKCGSI 362

Query: 237 EEAETLIENADCRHDSSLWEVLLG 260
            ++  L  +   R   S   +++G
Sbjct: 363 SDSHKLFCDMPGRDLVSWTTMMIG 386



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
           G  V  ++L+  Y   GL  E+  +F+++ +++ V+ +A++ G+     +     +F EM
Sbjct: 41  GPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEM 100

Query: 79  ----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLY-AKCGC 133
                + + F+   VL+AC G+ AL  G   H    +    + V +++AL+D+Y A C  
Sbjct: 101 LRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCAT 160

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           +D A  +F  +P++  ++W ++I+GF   G G   L  F  M      P+  SF     A
Sbjct: 161 MDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARA 220

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           C+ +     G++  A++TK Y +       N ++D+  R   L +A+
Sbjct: 221 CASISSYSCGKQIHAAVTK-YGLHCDAPVMNSILDMYCRCNYLCDAK 266



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 5/149 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH  ++  G   NV + +SL+DMY KCG + +SH++F  M  ++ VS + ++ G
Sbjct: 327 LSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIG 386

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           Y   G  +  +++F EM     + D   F  VL  C+    +  G +     +       
Sbjct: 387 YGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINP 446

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           D  I   +VDL  + G V+ A Q+   MP
Sbjct: 447 DQEIYRCVVDLLGRAGRVEEAFQLVENMP 475


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 213/335 (63%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++GKE+H  ++  GL  + V+ SSL+DMYGKCG +DE+  +FDK+++K+ VS ++++  
Sbjct: 234 IRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDR 293

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y ++  +     +F E+    E  + ++F  VL ACA L    LGK+VH  Y+ R G   
Sbjct: 294 YFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVH-GYMTRVGFDP 352

Query: 118 V-IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
                S+LVD+Y KCG ++ A  +    P  +L++W S+I G AQNG+ +EAL+ FD + 
Sbjct: 353 YSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLL 412

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + GTKPDHV+F+ VLSAC+H GL+++G + F S+T+++R+    +HY C+VDLL R+G  
Sbjct: 413 KSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRF 472

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E+ +++I     +    LW  +LG C+T+ N  +AE  A+++ +++P+  ++YV + N+Y
Sbjct: 473 EQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIY 532

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
            A G+W +  K+R  M+  GV K PG SW E   K
Sbjct: 533 AAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRK 567



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 159/333 (47%), Gaps = 40/333 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK+VH  + T G    +V+ + L+ MY KCG + ++ +VFD+M  ++  S + ++ G
Sbjct: 101 LEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNG 160

Query: 62  YCQTGDFESVIRIFREMEEID------------------------------------LFS 85
           Y + G  E   ++F EM E D                                    +F+
Sbjct: 161 YAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFT 220

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             I + A A +  +R GKE+H   +R     D ++ S+L+D+Y KCGC+D A  IF ++ 
Sbjct: 221 VSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIV 280

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +++++W SMI  + ++ R  E   +F ++     +P+  +F GVL+AC+ +   + G++
Sbjct: 281 EKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQ 340

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
               MT+     P     + +VD+  + G +E A+ +++    + D   W  L+G C   
Sbjct: 341 VHGYMTR-VGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGCA-- 396

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           +N    E +    + LK      +V   NV  A
Sbjct: 397 QNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/337 (39%), Positives = 211/337 (62%), Gaps = 8/337 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+  G+E+  ++       N+   + ++  Y + G + ++  +FD M +++SVS +A++ 
Sbjct: 296 RMDMGRELFEEMPF----PNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIA 351

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q G +E  + +  EM    E ++  +F   L ACA +AAL LGK+VH Q +R    K
Sbjct: 352 GYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEK 411

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             ++ +ALV +Y KCGC+D A+ +F  +  +++++WN+M++G+A++G G +AL +F+ M 
Sbjct: 412 GCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMI 471

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KPD ++ +GVLSACSH GL DRG ++F SM K+Y I P  +HY CM+DLLGRAG L
Sbjct: 472 TAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCL 531

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA+ LI N     D++ W  LLGA     N  + E+ A+ + +++P     YVLL N+Y
Sbjct: 532 EEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLY 591

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A GRW D  K+R  M+  GV+K PG SW+E  +K++
Sbjct: 592 AASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIH 628



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 129/265 (48%), Gaps = 17/265 (6%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y + G VDE+  VFD+M  KNS+S + LL  Y ++G  E   R+F    
Sbjct: 125 DVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKS 184

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           + +L S   ++        L   +++  Q   R    D+I  + ++  YA+ G +  A +
Sbjct: 185 DWELISCNCLMGGYVKRNMLGDARQLFDQIPVR----DLISWNTMISGYAQDGDLSQARR 240

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F + PVR++ TW +M+  + Q+G  +EA R+FD+M +       +S+  +++  +    
Sbjct: 241 LFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQ----KREMSYNVMIAGYAQYKR 296

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +D GR+ F  M       P I  +N M+    + G L +A  L +    R DS  W  ++
Sbjct: 297 MDMGRELFEEMP-----FPNIGSWNIMISGYCQNGDLAQARNLFDMMPQR-DSVSWAAII 350

Query: 260 GACTTFRNAHVAERVAKKIMELKPD 284
                +    + E     ++E+K D
Sbjct: 351 AG---YAQNGLYEEAMNMLVEMKRD 372



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 14/219 (6%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLG 102
           VFD M  +NSVS +A++ GY +   F     +F +M   DLFS+ ++L   A    LR  
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDA 114

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           + +          KDV+  +A++  Y + G VD A  +F +MP +N I+WN +++ + ++
Sbjct: 115 RMLFDSMPE----KDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRS 170

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
           GR EEA R+F    E  +  + +S   ++       ++   R+ F  +     I      
Sbjct: 171 GRLEEARRLF----ESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLIS----- 221

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +N M+    + G L +A  L E +  R D   W  ++ A
Sbjct: 222 WNTMISGYAQDGDLSQARRLFEESPVR-DVFTWTAMVYA 259



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 139/289 (48%), Gaps = 23/289 (7%)

Query: 31  YGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVL 90
           Y +   + ++  +FD M +K+ VS +A+L GY ++G  +    +F  M   +  S+  +L
Sbjct: 105 YARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLL 164

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
                 A +R G+    + +  S    ++I  + L+  Y K   +  A Q+F Q+PVR+L
Sbjct: 165 -----AAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDL 219

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           I+WN+MISG+AQ+G   +A R+F++        D  ++  ++ A    G++D  R+ F  
Sbjct: 220 ISWNTMISGYAQDGDLSQARRLFEE----SPVRDVFTWTAMVYAYVQDGMLDEARRVFDE 275

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL-GACTTFRNA 268
           M ++  +      YN M+    +   ++    L E     +  S W +++ G C   +N 
Sbjct: 276 MPQKREMS-----YNVMIAGYAQYKRMDMGRELFEEMPFPNIGS-WNIMISGYC---QNG 326

Query: 269 HVAERVAKKIMELKPD-CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
            +A+  A+ + ++ P    +S+  +   Y   G + +A  +   MK  G
Sbjct: 327 DLAQ--ARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDG 373



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 14/163 (8%)

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +  + + G  D A  +F  MP+RN +++N+MISG+ +N +   A  +FD M       D 
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPH----KDL 95

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
            S+  +L+  +    +   R  F SM ++      +  +N M+    R+G ++EA  + +
Sbjct: 96  FSWNLMLTGYARNRRLRDARMLFDSMPEK-----DVVSWNAMLSGYVRSGHVDEARDVFD 150

Query: 245 NADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287
               ++  S W  LL A    R+  + E  A+++ E K D  L
Sbjct: 151 RMPHKNSIS-WNGLLAAYV--RSGRLEE--ARRLFESKSDWEL 188


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 136/336 (40%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK+VHA +I      N+ V S+LVDMY KC  +  +  VF KM  KN VS +A+L G
Sbjct: 290 LQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVG 349

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  ++IF +M+    E D F+ G V+ +CA LA+L  G + HC+ +       
Sbjct: 350 YGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISF 409

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV LY KCG ++ +H++F +M   + ++W +++SG+AQ G+  E LR+F+ M  
Sbjct: 410 ITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLA 469

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+FIGVLSACS  GL+ +G + F SM KE+RI P  +HY CM+DL  RAG LE
Sbjct: 470 HGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLE 529

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I       D+  W  LL +C   RN  + +  A+ +++L+P    SY+LL ++Y 
Sbjct: 530 EARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYA 589

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G+W +   +R  M+  G++K PG SWI+  ++++
Sbjct: 590 AKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVH 625



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 157/317 (49%), Gaps = 39/317 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN------------- 51
           G +VH  V+  G    V V S LVDMY K GLV  + + FD+M +KN             
Sbjct: 161 GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMR 220

Query: 52  ------------------SVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
                             S+S +A++ G+ Q G     I +FREM     E+D ++FG V
Sbjct: 221 CSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSV 280

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L AC G+ AL+ GK+VH   IR     ++ + SALVD+Y KC  +  A  +F +M  +N+
Sbjct: 281 LTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNV 340

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ++W +M+ G+ QNG  EEA++IF DM   G +PD  +   V+S+C+++  ++ G + F  
Sbjct: 341 VSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQ-FHC 399

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
                 +   I   N +V L G+ G +E++  L        + S W  L+     F  A+
Sbjct: 400 RALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVS-WTALVSGYAQFGKAN 458

Query: 270 VAERVAKKIME--LKPD 284
              R+ + ++    KPD
Sbjct: 459 ETLRLFESMLAHGFKPD 475



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 134/325 (41%), Gaps = 68/325 (20%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +  K++H  +I       + + ++LV  Y K   +  + RVFD+M ++N  S + LL  Y
Sbjct: 26  RDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSY 85

Query: 63  CQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAAL----------------------- 99
            +      + R+F  M   D+ S+  ++ A AG   L                       
Sbjct: 86  SKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIAL 145

Query: 100 -------------RLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
                         LG +VH   ++      V + S LVD+Y+K G V  A Q F +MP 
Sbjct: 146 STMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPE 205

Query: 147 RNL-------------------------------ITWNSMISGFAQNGRGEEALRIFDDM 175
           +N+                               I+W +MI+GF QNG   EA+ +F +M
Sbjct: 206 KNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREM 265

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                + D  +F  VL+AC  +  +  G++  A + +    +  I   + +VD+  +   
Sbjct: 266 RLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT-DYQDNIFVGSALVDMYCKCKS 324

Query: 236 LEEAETLIENADCRHDSSLWEVLLG 260
           ++ AET+    +C++  S   +L+G
Sbjct: 325 IKSAETVFRKMNCKNVVSWTAMLVG 349



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
           C  L   R  K++HC  I+     ++ + + LV  YAK   + +A ++F QMP RNL +W
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           N+++S +++     E  R+F  M       D VS+  ++SA +  G + +  K +  M
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAM----PTRDMVSWNSLISAYAGRGFLLQSVKAYNLM 132


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/336 (40%), Positives = 207/336 (61%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK V + +I  G   ++ + ++LV M+  CG +  +  +F+ M +++ VS + ++ G
Sbjct: 524 LELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAG 583

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G+ +     F+ M+E     D  +F  +L ACA   AL  G+ +H      +   D
Sbjct: 584 FVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCD 643

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V++ + L+ +Y KCG +D AH +F  +P +N+ +W SMI+G+AQ+GRG+EAL +F  M +
Sbjct: 644 VVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQ 703

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F+G LSAC+H GLI  G  HF SM K++ I+P++EHY CMVDL GRAGLL 
Sbjct: 704 EGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLH 762

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I     + DS LW  LLGAC    +  +AE+VA+K +EL P+    YV+L N+Y 
Sbjct: 763 EAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYA 822

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G W +  K+R +M   GV K PG+SWIE + +++
Sbjct: 823 AAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVH 858



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 151/288 (52%), Gaps = 6/288 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LKQG+++H ++I  G   +  V ++L+ MY KCG + ++  VF+++ K+N V+ +A++  
Sbjct: 423 LKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITA 482

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q   +++ +  F    +E  + D  +F  +L  C    AL LGK V    IR     D
Sbjct: 483 YVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESD 542

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I +ALV ++  CG +  A  +F  MP R+L++WN++I+GF Q+G  + A   F  M E
Sbjct: 543 LHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQE 602

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F G+L+AC+    +  GR+  A +T E  +   +     ++ +  + G ++
Sbjct: 603 SGVKPDQITFTGLLNACASPEALTEGRRLHALIT-EAALDCDVVVGTGLISMYTKCGSID 661

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPD 284
           +A  +  N   ++  S   ++ G     R     E   +   E +KPD
Sbjct: 662 DAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPD 709



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 170/321 (52%), Gaps = 16/321 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +G E+ + ++  G   ++ V ++L++M+ KCG VD++ +VF+ + +++ ++ ++++ G
Sbjct: 221 VDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITG 280

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             +   F+    +F+ MEE     D  +F  +L+AC    AL  GK VH +        +
Sbjct: 281 LARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTE 340

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+ +Y KCG ++ A ++F  +  RN+++W +MI+GFAQ+GR EEA   F+ M E
Sbjct: 341 IYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIE 400

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G +P+ V+F+ +L ACS    + +GR+ H   +   Y    ++     ++ +  + G L
Sbjct: 401 SGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR--TALLSMYAKCGSL 458

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDN 294
            +A  + E    + +   W  ++ A         A    + +++  +KPD   ++  + N
Sbjct: 459 MDARNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSS-TFTSILN 516

Query: 295 VYRA-----VGRWNDAFKIRT 310
           V ++     +G+W  +  IR 
Sbjct: 517 VCKSPDALELGKWVQSLIIRA 537



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 135/242 (55%), Gaps = 5/242 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H  +    +  ++ + + L+ MY KCG  + + ++FD+M  K+  S + LL G
Sbjct: 120 LGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGG 179

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q   +E   R+  +M +     D ++F  +L ACA    +  G E+    +      D
Sbjct: 180 YVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTD 239

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL++++ KCG VD A ++F  +P R+LITW SMI+G A++ + ++A  +F  M E
Sbjct: 240 LFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEE 299

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD V+F+ +L AC+H   +++G++  A M KE  +  +I     ++ +  + G +E
Sbjct: 300 EGVQPDKVAFVSLLKACNHPEALEQGKRVHARM-KEVGLDTEIYVGTALLSMYTKCGSME 358

Query: 238 EA 239
           +A
Sbjct: 359 DA 360



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 147/289 (50%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VHA++  +GL   + V ++L+ MY KCG ++++  VF+ +  +N VS +A++ G
Sbjct: 322 LEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAG 381

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  E     F +M E  +     +F  +L AC+  +AL+ G+++H + I+     D
Sbjct: 382 FAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITD 441

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ +YAKCG +  A  +F ++  +N++ WN+MI+ + Q+ + + A+  F  + +
Sbjct: 442 DRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLK 501

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD  +F  +L+ C     ++ G K   S+      +  +   N +V +    G L 
Sbjct: 502 EGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLM 560

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            A  L  +   R D   W  ++           A    K + E  +KPD
Sbjct: 561 SAMNLFNDMPER-DLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPD 608


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 136/330 (41%), Positives = 209/330 (63%), Gaps = 8/330 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQGYC 63
           GK++H   +   +      E++L+  YGKCG +D   ++F +M  ++++V+ ++++ GY 
Sbjct: 536 GKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYI 595

Query: 64  QT----GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                    + V  + +  + +D F +  VL A A +A L  G EVH   +R     DV+
Sbjct: 596 HNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVV 655

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT-EG 178
           + SALVD+Y+KCG +D+A + F  MPVRN  +WNSMISG+A++G+GEEAL++F+ M  +G
Sbjct: 656 VGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDG 715

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            T PDHV+F+GVLSACSH GL++ G KHF SM+  Y + P+IEH++CM D+LGRAG L++
Sbjct: 716 QTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDK 775

Query: 239 AETLIENADCRHDSSLWEVLLGAC--TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            E  IE    + +  +W  +LGAC     R A + ++ A+ + +L+P+  ++YVLL N+Y
Sbjct: 776 LEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMY 835

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
            A GRW D  K R  MK + VKK  G SW+
Sbjct: 836 AAGGRWEDLVKARKKMKDADVKKEAGYSWV 865



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 141/264 (53%), Gaps = 7/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           LK+G+EVH  VIT GL   +V + + LV+MY KCG + ++ RVF  M  K+SVS ++++ 
Sbjct: 329 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMIT 388

Query: 61  GYCQTGDFESVIRIFREMEEIDLF--SFGIV--LRACAGLAALRLGKEVHCQYIRRSGCK 116
           G  Q G F   +  ++ M   D+   SF ++  L +CA L   +LG+++H + ++     
Sbjct: 389 GLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDL 448

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG-EEALRIFDDM 175
           +V + +AL+ LYA+ G ++   +IF  MP  + ++WNS+I   A++ R   EA+  F + 
Sbjct: 449 NVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNA 508

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G K + ++F  VLSA S +   + G K    +  +  I  +    N ++   G+ G 
Sbjct: 509 QRAGQKLNRITFSSVLSAVSSLSFGELG-KQIHGLALKNNIADEATTENALIACYGKCGE 567

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           ++  E +      R D+  W  ++
Sbjct: 568 MDGCEKIFSRMAERRDNVTWNSMI 591



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 106/195 (54%), Gaps = 8/195 (4%)

Query: 9   HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF 68
           H+++    L  +V + ++L++ Y + G    + +VFD+M  +N VS + ++ GY + G+ 
Sbjct: 24  HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83

Query: 69  ESVIRIFREMEEIDLFS----FGIVLRACA--GLAALRLGKEVHCQYIRRSGCKDVIIES 122
           +  +   R+M +  +FS    F  VLRAC   G   +  G+++H    + S   D ++ +
Sbjct: 84  KEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSN 143

Query: 123 ALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
            L+ +Y KC G V +A   F  + V+N ++WNS+IS ++Q G    A RIF  M   G++
Sbjct: 144 VLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSR 203

Query: 182 PDHVSFIG-VLSACS 195
           P   +F   V +ACS
Sbjct: 204 PTEYTFGSLVTTACS 218



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 15/257 (5%)

Query: 16  GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
           GL  ++ V S LV  + K G +  + +VF++M  +N+V+ + L+ G  +    E   ++F
Sbjct: 238 GLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLF 297

Query: 76  REME---EIDLFSFGIVLRA-----CAGLAALRLGKEVHCQYIRRSGCKDVI--IESALV 125
            +M    ++   S+ I+L +      A    L+ G+EVH   I  +G  D +  I + LV
Sbjct: 298 MDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVIT-TGLVDFMVGIGNGLV 356

Query: 126 DLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185
           ++YAKCG +  A ++F  M  ++ ++WNSMI+G  QNG   EA+  +  M      P   
Sbjct: 357 NMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSF 416

Query: 186 SFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           + I  LS+C+ +     G++ H  S+  +  I   +   N ++ L    G L E   +  
Sbjct: 417 TLISSLSSCASLKWAKLGQQIHGESL--KLGIDLNVSVSNALMTLYAETGYLNECRKIFS 474

Query: 245 NADCRHDSSLWEVLLGA 261
           +    HD   W  ++GA
Sbjct: 475 SMP-EHDQVSWNSIIGA 490



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 9/180 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKC-GLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+++H  +  L    + VV + L+ MY KC G V  +   F  +  KNSVS ++++  Y 
Sbjct: 123 GRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYS 182

Query: 64  QTGDFESVIRIFREME----EIDLFSFG-IVLRACAGLAA-LRLGKEVHCQYIRRSGC-K 116
           Q GD  S  RIF  M+        ++FG +V  AC+     +RL +++ C  I++SG   
Sbjct: 183 QAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCT-IQKSGLLT 241

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+ + S LV  +AK G + +A ++F QM  RN +T N ++ G  +   GEEA ++F DM 
Sbjct: 242 DLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN 301



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G EVHA  +   L  +VVV S+LVDMY KCG +D + R F+ M  +NS S ++++ G
Sbjct: 635 LERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISG 694

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y + G  E  +++F  M+       D  +F  VL AC+    L  G + H + +  S   
Sbjct: 695 YARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFK-HFESMSDSYGL 753

Query: 117 DVIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQ-NGRGEE 167
              IE  S + D+  + G +D       +MP++ N++ W +++    + NGR  E
Sbjct: 754 APRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAE 808



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 52/85 (61%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           KDV + + L++ Y + G    A ++F +MP+RN ++W  ++SG+++NG  +EAL    DM
Sbjct: 34  KDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDM 93

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLI 200
            + G   +  +F+ VL AC  +G +
Sbjct: 94  VKEGIFSNQYAFVSVLRACQEIGSV 118


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 134/334 (40%), Positives = 216/334 (64%), Gaps = 5/334 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SALLQGYC 63
           GK+ H  ++ LG    V V+S+LVDMY KCG + ++   F ++   + V   +A++ G+ 
Sbjct: 345 GKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHV 404

Query: 64  QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G+ E  + ++  M++  +     +   VLRACA LAAL LGK++H Q ++        
Sbjct: 405 QNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQILKCRFSLGGS 464

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL  +Y+KCG ++ +  +F +MP R++I+WNS+IS F+Q+GRG +AL +F++M   G
Sbjct: 465 VGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDMFEEMKLEG 524

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           T PDH++FI +LSACSHMGL+DRG  +F +MTK+Y + P ++HY CMVD+L RAG L+EA
Sbjct: 525 TAPDHITFINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYACMVDILSRAGQLKEA 584

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
           +  I++    H + LW ++LGAC + R+  V     +++MEL  +   +Y+LL N+Y A 
Sbjct: 585 KDFIDSITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQ 644

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            +WND  ++R LM+  GV K  G SW+E  ++++
Sbjct: 645 RKWNDVERVRHLMRLRGVSKDLGCSWVELYNRVH 678



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 125/216 (57%), Gaps = 5/216 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H  V+  GL G V VE+SLV MY K   +D + RVF    ++NS++ SA++ G
Sbjct: 241 LLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMRVFGSSKERNSITWSAMITG 300

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G+     R+F +M         F+F  VL AC+ + AL +GK+ HC  ++      
Sbjct: 301 YAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQ 360

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           V ++SALVD+YAKCGC+  A   F Q+  V +++ W +MI+G  QNG  EEAL ++  M 
Sbjct: 361 VYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALMLYSRMD 420

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           + G  P +++   VL AC+ +  +D G++  A + K
Sbjct: 421 KQGIIPSYLTVTSVLRACACLAALDLGKQLHAQILK 456



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 8/249 (3%)

Query: 18  CG--NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
           CG  NV V ++L++MY K G V ++ RVFD ML +N+VS +A++ GY      E    +F
Sbjct: 153 CGSNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELF 212

Query: 76  REME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
           R M      E + F    VL A +    L +G ++H   ++      V +E++LV +YAK
Sbjct: 213 RLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAK 272

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
             C+D A ++F     RN ITW++MI+G+AQNG    A R+F  M   G  P   +F+GV
Sbjct: 273 AECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGV 332

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
           L+ACS MG +  G++    M K    + ++   + +VD+  + G + +A+          
Sbjct: 333 LNACSDMGALVVGKQTHCLMVK-LGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVD 391

Query: 251 DSSLWEVLL 259
           D  LW  ++
Sbjct: 392 DVVLWTAMI 400



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++HA+++         V ++L  MY KCG +++S  VF +M  ++ +S ++++  
Sbjct: 444 LDLGKQLHAQILKCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISV 503

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLG 102
           + Q G     + +F EM+      D  +F  +L AC+ +  +  G
Sbjct: 504 FSQHGRGSDALDMFEEMKLEGTAPDHITFINLLSACSHMGLVDRG 548


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 136/330 (41%), Positives = 208/330 (63%), Gaps = 8/330 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQGYC 63
           GK++H   +   +      E++L+  YGKCG +D   ++F +M  +++ V+ ++++ GY 
Sbjct: 256 GKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYI 315

Query: 64  QT----GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                    + V  + +  + +D F +  VL A A +A L  G EVH   +R     DV+
Sbjct: 316 HNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVV 375

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT-EG 178
           + SALVD+Y+KCG +D+A + F  MPVRN  +WNSMISG+A++G+GEEAL++F +M  +G
Sbjct: 376 VGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDG 435

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            T PDHV+F+GVLSACSH GL++ G KHF SM+  Y + P+IEH++CM DLLGRAG L++
Sbjct: 436 QTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDK 495

Query: 239 AETLIENADCRHDSSLWEVLLGAC--TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            E  I+    + +  +W  +LGAC     R A + ++ A+ + +L+P+  ++YVLL N+Y
Sbjct: 496 LEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMY 555

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
            A GRW D  K R  MK + VKK  G SW+
Sbjct: 556 AAGGRWEDLVKARKKMKDADVKKEAGYSWV 585



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 142/264 (53%), Gaps = 7/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           LK+G+EVH  VIT GL   +V + + LV+MY KCG + ++ RVF  M++K+SVS ++++ 
Sbjct: 49  LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMIT 108

Query: 61  GYCQTGDFESVIRIFREME--EIDLFSFGIV--LRACAGLAALRLGKEVHCQYIRRSGCK 116
           G  Q G F   +  ++ M   EI   SF ++  L +CA L   +LG+++H + ++     
Sbjct: 109 GLDQNGCFIEAVERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDL 168

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG-EEALRIFDDM 175
           +V + +AL+ LYA+ G ++   +IF  MP  + ++WNS+I   A + R   EA+  F + 
Sbjct: 169 NVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNA 228

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G K + ++F  VLSA S +   + G K    +  +Y I  +    N ++   G+ G 
Sbjct: 229 LRAGQKLNRITFSSVLSAVSSLSFGELG-KQIHGLALKYNIADEATTENALIACYGKCGE 287

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           ++  E +      R D   W  ++
Sbjct: 288 MDGCEKIFSRMSERRDDVTWNSMI 311



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 10/175 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G EVHA  +   L  +VVV S+LVDMY KCG +D + R F+ M  +NS S ++++ G
Sbjct: 355 LERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISG 414

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y + G  E  +++F  M+       D  +F  VL AC+    L  G + H + +  S   
Sbjct: 415 YARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFK-HFESMSDSYGL 473

Query: 117 DVIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQ-NGRGEE 167
              IE  S + DL  + G +D       +MPV+ N++ W +++    + NGR  E
Sbjct: 474 APRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPNVLIWRTVLGACCRANGRKAE 528



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 9/201 (4%)

Query: 67  DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI--IESAL 124
           D  S+I +  E   I L SF     + A    L+ G+EVH   I  +G  D +  I + L
Sbjct: 19  DMNSMIDVSPESYVILLSSFPEY--SLAEQVGLKKGREVHGHVIT-TGLVDFMVGIGNGL 75

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           V++YAKCG +  A ++F  M  ++ ++WNSMI+G  QNG   EA+  +  M      P  
Sbjct: 76  VNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHEILPGS 135

Query: 185 VSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
            + I  LS+C+ +     G++ H  S+  +  I   +   N ++ L    G L E   + 
Sbjct: 136 FTLISSLSSCASLKWAKLGQQIHGESL--KLGIDLNVSVSNALMTLYAETGYLNECRKIF 193

Query: 244 ENADCRHDSSLWEVLLGACTT 264
            +    HD   W  ++GA  +
Sbjct: 194 SSMP-EHDQVSWNSIIGALAS 213


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 138/335 (41%), Positives = 205/335 (61%), Gaps = 3/335 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G++VH+ VI  G+  N+ V ++L++MY KCG V+E+  VF K+  K+ VS + ++ G
Sbjct: 413 LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGG 472

Query: 62  YCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y Q       + +F +M++    D  +   VL ACAGLAAL  G+E+H   +RR    D+
Sbjct: 473 YSQNLLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL 532

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            +  ALVD+YAKCG +  A  +F  +P ++LI+W  MI+G+  +G G EA+  F++M   
Sbjct: 533 HVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIA 592

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD  SF  +L+ACSH GL++ G K F SM  E  ++PK+EHY C+VDLL R G L +
Sbjct: 593 GIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSK 652

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   IE+   + D+++W VLL  C    +  +AE+VA+ I EL+PD    YV+L NVY  
Sbjct: 653 AYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAE 712

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             +W +  K+R  M+  G K+ PG SWIE   K N
Sbjct: 713 AEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFN 747



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 166/320 (51%), Gaps = 12/320 (3%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            L  G+ +H   +       VV  ++L+DMY KCG ++ +  VF KM     VS ++++ 
Sbjct: 311 NLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIA 370

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y + G +   I +F EM+      D+++   ++ ACA  ++L  G++VH   I+     
Sbjct: 371 AYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGS 430

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ + +AL+++YAKCG V+ A  +F ++PV+++++WN+MI G++QN    EAL +F DM 
Sbjct: 431 NLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM- 489

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC-MVDLLGRAGL 235
           +   KPD ++   VL AC+ +  +D+GR+    + +         H  C +VD+  + GL
Sbjct: 490 QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL--HVACALVDMYAKCGL 547

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTT--FRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           L  A+ L +    + D   W V++       F N  ++     +I  ++PD   S+  + 
Sbjct: 548 LVLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPD-ESSFSAIL 605

Query: 294 NVYRAVGRWNDAFKIRTLMK 313
           N     G  N+ +K    M+
Sbjct: 606 NACSHSGLLNEGWKFFNSMR 625



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 144/265 (54%), Gaps = 6/265 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++K+ K VH  V+ LG   N  V +SL+  Y K G V+ +H +FD++ + + VS ++++ 
Sbjct: 210 KVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 269

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G    G   + + IF +M     E+DL +   VL ACA +  L LG+ +H   ++    +
Sbjct: 270 GCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSE 329

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V+  + L+D+Y+KCG ++ A ++F++M    +++W S+I+ + + G   +A+ +FD+M 
Sbjct: 330 EVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQ 389

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD  +   ++ AC+    +D+GR   + + K   +   +   N ++++  + G +
Sbjct: 390 SKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSV 448

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           EEA  +      + D   W  ++G 
Sbjct: 449 EEARLVFSKIPVK-DIVSWNTMIGG 472



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 134/265 (50%), Gaps = 8/265 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH+ +I+ G+  +  + + LV MY  CG + +  ++FDK++       + L+  
Sbjct: 110 LEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSE 169

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G+F   + +F++M+++    + ++F  VL+  A L  ++  K VH   ++     +
Sbjct: 170 YAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSN 229

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++L+  Y K G V+ AH +F ++   ++++WNSMI+G   NG     L IF  M  
Sbjct: 230 TAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLI 289

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + D  + + VL AC+++G +  GR       K      ++   N ++D+  + G L 
Sbjct: 290 LGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKAC-FSEEVVFSNTLLDMYSKCGNLN 348

Query: 238 EA-ETLIENADCRHDSSLWEVLLGA 261
            A E  ++  D    S  W  ++ A
Sbjct: 349 GATEVFVKMGDTTIVS--WTSIIAA 371



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 4/213 (1%)

Query: 54  SSSALLQGYCQTGDFESVIRIFREME--EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           + +A +  +C+ GD  + I +  + +  E+ L S+  VL+ CA   +L  GK VH   I 
Sbjct: 63  NQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                D  + + LV +Y  CG +    +IF ++    +  WN ++S +A+ G   E++ +
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           F  M + G   +  +F  VL   + +G +   ++    + K           N ++    
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLK-LGFGSNTAVVNSLIAAYF 241

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           + G +E A  L +      D   W  ++  C  
Sbjct: 242 KFGGVESAHNLFDELS-EPDVVSWNSMINGCVV 273


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G E+H ++I  G+  +  V S+LVDMYGKCG++ E+ ++  ++ +K +VS ++++ G
Sbjct: 457 LNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISG 516

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +      E+  R F +M E+    D +++  VL  CA +A + LGK++H Q ++     D
Sbjct: 517 FSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSD 576

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I S LVD+Y+KCG +  +  +F + P R+ +TW++MI  +A +G GE+A+ +F++M  
Sbjct: 577 VYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQL 636

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP+H  FI VL AC+HMG +D+G  +F  M   Y + P++EHY+CMVDLLGR+G + 
Sbjct: 637 LNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVN 696

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LIE+     D  +W  LL  C    N  VAE+    +++L P    +YVLL NVY 
Sbjct: 697 EALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYA 756

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            VG W +  K+R++MK   +KK PG SWIE   +++
Sbjct: 757 IVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRDEVH 792



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 150/265 (56%), Gaps = 6/265 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R  +G ++H   +  GL  N+ V ++++DMYGKCG + E+  +F++M ++++VS +A++ 
Sbjct: 355 RHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIA 414

Query: 61  GYCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            + Q  +    + +F    R   E D F++G V++ACAG  AL  G E+H + I+     
Sbjct: 415 AHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGL 474

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + SALVD+Y KCG +  A +I  ++  +  ++WNS+ISGF+   + E A R F  M 
Sbjct: 475 DWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQML 534

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E G  PD+ ++  VL  C++M  I+ G++  A + K  ++   +   + +VD+  + G +
Sbjct: 535 EMGIIPDNYTYATVLDVCANMATIELGKQIHAQILK-LQLHSDVYIASTLVDMYSKCGNM 593

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           +++  + E A  R D   W  ++ A
Sbjct: 594 QDSRLMFEKAPKR-DYVTWSAMICA 617



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 144/263 (54%), Gaps = 10/263 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH   I +G   +VV  S+LVDMY KC  +D++ RVF +M ++N V  SA++ GY Q
Sbjct: 157 GLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQ 216

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              F   +++F++M ++ +     ++  V R+CAGL+A +LG ++H   ++     D II
Sbjct: 217 NDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSII 276

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A +D+YAKC  +  A ++F  +P     ++N++I G+A+  +G +AL IF  +     
Sbjct: 277 GTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNL 336

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK--HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             D +S  G L+ACS   +I R  +      +  +  +   I   N ++D+ G+ G L E
Sbjct: 337 GFDEISLSGALTACS---VIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALME 393

Query: 239 AETLIENADCRHDSSLWEVLLGA 261
           A  + E  + R D+  W  ++ A
Sbjct: 394 ACLIFEEME-RRDAVSWNAIIAA 415



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 35/239 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+VH ++I  G    + V + L+  Y K   ++ + +VFD+M +++ +S + L+ G
Sbjct: 22  LNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRDVISWNTLIFG 81

Query: 62  YCQTGDFESVIRIFREMEEIDLFS-----------------------------------F 86
           Y   G+      +F  M E D+ S                                   F
Sbjct: 82  YAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATF 141

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            ++L+AC+G+    LG +VHC  I+     DV+  SALVD+Y+KC  +D A ++F +MP 
Sbjct: 142 AVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPE 201

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           RNL+ W+++I+G+ QN R  E L++F DM + G      ++  V  +C+ +     G +
Sbjct: 202 RNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQ 260



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 144/300 (48%), Gaps = 12/300 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K G ++H   +      + ++ ++ +DMY KC  + ++ +VF+ +      S +A++ G
Sbjct: 255 FKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVG 314

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +       + IF+ ++      D  S    L AC+ +     G ++H   ++     +
Sbjct: 315 YARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFN 374

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + + ++D+Y KCG +  A  IF +M  R+ ++WN++I+   QN    + L +F  M  
Sbjct: 375 ICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLR 434

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGL 235
              +PD  ++  V+ AC+    ++ G +    + K       ++ +  + +VD+ G+ G+
Sbjct: 435 STMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKS---GMGLDWFVGSALVDMYGKCGM 491

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK--PDCHLSYVLLD 293
           L EAE +    + +   S W  ++   ++ + +  A+R   +++E+   PD +    +LD
Sbjct: 492 LMEAEKIHARLEEKTTVS-WNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLD 550



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 78  MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
           M      +F  +L+ C+ L AL  GK+VH Q I       + + + L+  Y K   +++A
Sbjct: 1   MNPTKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYA 60

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
            ++F +MP R++I+WN++I G+A  G    A  +FD M E     D VS+  +LS   H 
Sbjct: 61  FKVFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPE----RDVVSWNSLLSCYLHN 116

Query: 198 GLIDRGRKHFASM 210
           G+  +  + F  M
Sbjct: 117 GVNRKSIEIFVRM 129


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 139/327 (42%), Positives = 204/327 (62%), Gaps = 4/327 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GKEVH   +   +   V+V  +LV+MY KCG +  + RVFD + +K+  S S+L+ G
Sbjct: 565 LEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSG 624

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + +F E+   DL    F+   V+ A A L +L +G ++H    +     +
Sbjct: 625 YAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAE 684

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S+LV +Y+KCG +D  H++F Q+   +LI+W +MI  +AQ+G+G EAL+++D M +
Sbjct: 685 VSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRK 744

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GTKPD V+F+GVLSACSH G+++ G  H  SM KEY I+P   HY CMVDLLGR+G L+
Sbjct: 745 EGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLK 804

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE  I N     D+ LW +LL AC    +  +    AK+++EL+P    +YV L N+  
Sbjct: 805 EAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICA 864

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKS 324
            +G W D  KIR+LM+ +GVKK PG S
Sbjct: 865 DMGWWEDVMKIRSLMEGTGVKKEPGWS 891



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 149/262 (56%), Gaps = 6/262 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H  ++ +GL  ++ V SSL  MY KCG ++ES+ VF++M  K++VS ++++ G
Sbjct: 464 LSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITG 523

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + +    E  +++FREM  EEI  D  +    L AC+ L +L  GKEVH   +R    K+
Sbjct: 524 FSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKE 583

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V++  ALV++Y+KCG +  A ++F  +P ++  + +S++SG+AQNG  E+AL +F ++  
Sbjct: 584 VLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRM 643

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
                D  +   V+ A + +  +D G +  A +TK   +  ++   + +V +  + G ++
Sbjct: 644 ADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTK-MGLNAEVSVGSSLVTMYSKCGSID 702

Query: 238 EAETLIENADCRHDSSLWEVLL 259
           E   + E  + + D   W  ++
Sbjct: 703 ECHKVFEQIE-KPDLISWTAMI 723



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 151/287 (52%), Gaps = 9/287 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ V++  +  G   N  V + ++D++ K    +++ RVF  +L +N V  +A++ G  +
Sbjct: 166 GELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVK 225

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             +    + +F +M       + F+F  +L ACA L  L  G+ V    I+    +DV +
Sbjct: 226 NRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFV 285

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A++DLYAKC  +D A + FL+MP+RN+++W ++ISGF Q      A   F +M + G 
Sbjct: 286 GTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGE 345

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEA 239
           K ++ +   VL+AC+   +I    +  + + K  + +   +   + ++++  + G+++ +
Sbjct: 346 KINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVS--SALINMYSKIGVVDLS 403

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           E +    +   + ++W V++ A     +   A  + +++++  L+PD
Sbjct: 404 ERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPD 450



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 120/209 (57%), Gaps = 8/209 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQ 60
           +K+  ++H+ +   G   +  V S+L++MY K G+VD S RVF +M   KN    + ++ 
Sbjct: 365 IKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMIS 424

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            + Q+G     + +F+ M +     D F    VL     + +L LG+ +HC  ++     
Sbjct: 425 AFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSI---IDSLSLGRLIHCYILKIGLFT 481

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+ + S+L  +Y+KCG ++ ++ +F QMP ++ ++W SMI+GF+++   E+A+++F +M 
Sbjct: 482 DISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREML 541

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
               +PD ++    L+ACS +  +++G++
Sbjct: 542 LEEIRPDQMTLTAALTACSALHSLEKGKE 570



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 146/291 (50%), Gaps = 12/291 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            L+ G+ V   VI  G   +V V ++++D+Y KC  +D++ + F +M  +N VS + ++ 
Sbjct: 263 ELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIIS 322

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+ Q  D  S    F+EM    E+I+ ++   VL AC     ++   ++H    +     
Sbjct: 323 GFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYL 382

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           D  + SAL+++Y+K G VD + ++F +M   +NL  W  MIS FAQ+G    A+ +F  M
Sbjct: 383 DSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRM 442

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G +PD      VLS    + L   GR     + K   +   I   + +  +  + G 
Sbjct: 443 LQEGLRPDKFCSSSVLSIIDSLSL---GRLIHCYILK-IGLFTDISVGSSLFTMYSKCGS 498

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
           LEE+ T+ E    + + S W  ++   +   +A  A ++ ++++  E++PD
Sbjct: 499 LEESYTVFEQMPDKDNVS-WASMITGFSEHDHAEQAVQLFREMLLEEIRPD 548



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 5/208 (2%)

Query: 2   LKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L+  K +HA  + T  L  N  + +SL+  Y K   +  + R+FDK    N +S + L+ 
Sbjct: 61  LRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILIS 120

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G  Q   FE   R F +M     + + F++G VL AC  L +   G+ V+   ++     
Sbjct: 121 GCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFS 180

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + + ++DL+AK    + A ++F  +   N++ WN++ISG  +N     AL +F  M 
Sbjct: 181 NGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMC 240

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGR 204
                P+  +F  +L+AC+ +  ++ GR
Sbjct: 241 CRFFMPNSFTFSSILTACAALEELEFGR 268


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 136/328 (41%), Positives = 201/328 (61%), Gaps = 6/328 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +H+ ++  GL  ++ V ++LVD Y K      +  VFD+M +++ VS ++LL G  ++  
Sbjct: 61  LHSLLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRS 120

Query: 68  FESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            +S ++++R+M       D F+    L +CAG  AL LG+ VH   +R +    + + ++
Sbjct: 121 HDSALQVYRDMVAAGVGPDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSVGNS 180

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVR--NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           LV +YAK G +  A ++F    V   + ITW ++I G+AQNGRG E+L I+ DM   G +
Sbjct: 181 LVSMYAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGCR 240

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD+V+FIG+L ACSH GL+D GR HF SM  E+ I P  +HY CMVDLLGRAG L+EA  
Sbjct: 241 PDYVTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMD 300

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L+  +  R D+++W+ LL AC T RNA +AE  A  +  L P   + YV+L N+Y   GR
Sbjct: 301 LLNRSTTRLDATVWKALLAACRTHRNAELAEHAAAMVWRLDPTDAVPYVMLSNLYSRAGR 360

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           W D  ++RT MK  G+ K PG SW+ AN
Sbjct: 361 WGDVARVRTSMKARGITKEPGCSWVAAN 388



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 102/242 (42%), Gaps = 47/242 (19%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD--KMLKKNSVSSSALL 59
           L+ G+ VHA  + L L   + V +SLV MY K G + E+ +VFD  ++ + + ++ +AL+
Sbjct: 156 LELGRSVHAAAVRLALDPFLSVGNSLVSMYAKTGSLGEAKKVFDATRVDRCDPITWTALI 215

Query: 60  QGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DV 118
            GY Q G     + I+ +M                                 RSGC+ D 
Sbjct: 216 VGYAQNGRGRESLEIYADMV--------------------------------RSGCRPDY 243

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT-----WNSMISGFAQNGRGEEALRIFD 173
           +    L+   +  G VD     F  M   + I      +  M+    + GR +EA+ + +
Sbjct: 244 VTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMDLLN 303

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGR 232
             T   T+ D   +  +L+AC      +   +H A+M   +R+ P     Y  + +L  R
Sbjct: 304 RST---TRLDATVWKALLAACRTHRNAELA-EHAAAMV--WRLDPTDAVPYVMLSNLYSR 357

Query: 233 AG 234
           AG
Sbjct: 358 AG 359


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 138/335 (41%), Positives = 205/335 (61%), Gaps = 3/335 (0%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L +G++VH+ VI  G+  N+ V ++L++MY KCG V+E+  VF K+  K+ VS + ++ G
Sbjct: 688  LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGG 747

Query: 62   YCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Y Q       + +F +M++    D  +   VL ACAGLAAL  G+E+H   +RR    D+
Sbjct: 748  YSQNSLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL 807

Query: 119  IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
             +  ALVD+YAKCG +  A  +F  +P ++LI+W  MI+G+  +G G EA+  F++M   
Sbjct: 808  HVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIA 867

Query: 179  GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            G +PD  SF  +L+ACSH GL++ G K F SM  E  ++PK+EHY C+VDLL R G L +
Sbjct: 868  GIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSK 927

Query: 239  AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
            A   IE+   + D+++W VLL  C    +  +AE+VA+ I EL+PD    YV+L NVY  
Sbjct: 928  AYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAE 987

Query: 299  VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              +W +  K+R  M+  G K+ PG SWIE   K N
Sbjct: 988  AEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFN 1022



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 166/319 (52%), Gaps = 12/319 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H   +       VV  ++L+DMY KCG ++ +  VF KM     VS ++ +  
Sbjct: 587 LSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAA 646

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G +   I +F EM+      D+++   ++ ACA  ++L  G++VH   I+     +
Sbjct: 647 YVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSN 706

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+++YAKCG V+ A  +F ++PV+++++WN+MI G++QN    EAL +F DM +
Sbjct: 707 LPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-Q 765

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC-MVDLLGRAGLL 236
              KPD ++   VL AC+ +  +D+GR+    + +         H  C +VD+  + GLL
Sbjct: 766 KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL--HVACALVDMYAKCGLL 823

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTT--FRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
             A+ L +    + D   W V++       F N  ++     +I  ++PD   S+ ++ N
Sbjct: 824 VLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPD-ESSFSVILN 881

Query: 295 VYRAVGRWNDAFKIRTLMK 313
                G  N+ +K    M+
Sbjct: 882 ACSHSGLLNEGWKFFNSMR 900



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 142/265 (53%), Gaps = 6/265 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++K+ K VH  V+ LG   N  V +SL+  Y K G V+ +H +FD++ + + VS ++++ 
Sbjct: 485 KVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 544

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G    G   + + IF +M     E+DL +   VL A A +  L LG+ +H   ++    +
Sbjct: 545 GCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSE 604

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V+  + L+D+Y+KCG ++ A ++F++M    +++W S I+ + + G   +A+ +FD+M 
Sbjct: 605 EVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQ 664

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD  +   ++ AC+    +D+GR   + + K   +   +   N ++++  + G +
Sbjct: 665 SKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSV 723

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           EEA  +      + D   W  ++G 
Sbjct: 724 EEARLVFSKIPVK-DIVSWNTMIGG 747



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 128/251 (50%), Gaps = 6/251 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH+ +I+ G+  +  + + LV MY  CG + +  ++FDK++       + L+  
Sbjct: 385 LEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSE 444

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G+F   + +F++M+++    + ++F  VL+  A L  ++  K VH   ++     +
Sbjct: 445 YAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSN 504

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++L+  Y K G V+ AH +F ++   ++++WNSMI+G   NG     L IF  M  
Sbjct: 505 TAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLI 564

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + D  + + VL A +++G +  GR       K      ++   N ++D+  + G L 
Sbjct: 565 LGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKAC-FSEEVVFSNTLLDMYSKCGNLN 623

Query: 238 EA-ETLIENAD 247
            A E  ++  D
Sbjct: 624 GATEVFVKMGD 634



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 4/211 (1%)

Query: 54  SSSALLQGYCQTGDFESVIRIFREME--EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           + +A +  +C+ GD  + I +  + +  E+ L S+  VL+ CA   +L  GK VH   I 
Sbjct: 338 NQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                D  + + LV +Y  CG +    +IF ++    +  WN ++S +A+ G   E++ +
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           F  M + G   +  +F  VL   + +G +   ++    + K           N ++    
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLK-LGFGSNTAVVNSLIAAYF 516

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           + G +E A  L +      D   W  ++  C
Sbjct: 517 KFGGVESAHNLFDELS-EPDVVSWNSMINGC 546


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/337 (39%), Positives = 206/337 (61%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VH + I       + V +SLVDMY KC + DE+  +F  + ++++VS +AL+ G
Sbjct: 361 LQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISG 420

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G   + +++F +M       D  +F  VL+A AG A+L LGK++H   IR    ++
Sbjct: 421 YVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLEN 480

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   S LVD+YAKCG +  A Q+F +MP RN ++WN++IS +A NG GE A+  F  M +
Sbjct: 481 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQ 540

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD VS +GVL ACSH G +++G + F +M+  Y I PK +HY CM+DLLGR G   
Sbjct: 541 SGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFA 600

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL-KPDCHLSYVLLDNVY 296
           EAE L++      D  +W  +L AC  ++N  +AER A+++  + K     +YV + N+Y
Sbjct: 601 EAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIY 660

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A G+W +   ++  M+  G+KK+P  SW+E N K++
Sbjct: 661 AAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIH 697



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 145/286 (50%), Gaps = 8/286 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H   +T G   +  V + ++  Y K   V E+  +F++M + + VS + ++  Y Q
Sbjct: 263 GQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQ 322

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              +E  + +FREM+ +      F F  +L   A L++L++G++VHCQ I  +    + +
Sbjct: 323 AEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHV 382

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++LVD+YAKC   D A  IF  +  R+ ++W ++ISG+ Q G     L++F  M     
Sbjct: 383 GNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANL 442

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           + D  +F  VL A +    +  G++  A + +   ++  +   + +VD+  + G +++A 
Sbjct: 443 RADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLE-NVFSGSGLVDMYAKCGSIKDAV 501

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            + E    R+  S W  L+ A     +   A     K+++  L+PD
Sbjct: 502 QVFEEMPDRNAVS-WNALISAYADNGDGEAAIGAFTKMIQSGLQPD 546



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 131/261 (50%), Gaps = 12/261 (4%)

Query: 7   EVHAKVITLGLCGNVVVE--SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           +VHA  + LG   N+ +   + L+  Y +   +D +  +F+++L K+SV+ + L+ GY +
Sbjct: 162 QVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEK 221

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G +   I +F +M +       F+F  VL+A  GL    LG+++H   +     +D  +
Sbjct: 222 DGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASV 281

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + ++  Y+K   V     +F +MP  + +++N +IS ++Q  + EE+L +F +M   G 
Sbjct: 282 GNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGF 341

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHY-NCMVDLLGRAGLLEE 238
              +  F  +LS  +++  +  GR+ H  ++         I H  N +VD+  +  + +E
Sbjct: 342 DRRNFPFATMLSIAANLSSLQVGRQVHCQAIVA---TADSILHVGNSLVDMYAKCEMFDE 398

Query: 239 AETLIENADCRHDSSLWEVLL 259
           AE + ++   R   S W  L+
Sbjct: 399 AELIFKSLSQRSTVS-WTALI 418



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 37/225 (16%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + V A++I  G   +    +  V+   + G V  + +V+D+M  KN+VS++ ++ GY + 
Sbjct: 29  RRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKM 88

Query: 66  GDFESVIRIFREMEEIDLFSFGIVLRACAGL----AALRLGKEV--HCQ---YIRRS--- 113
           GD  S   +F  M +  + ++ I++   AG      A +L +++   C    Y+  +   
Sbjct: 89  GDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLL 148

Query: 114 -GCKDVIIESALVDLYAKCGCVDFAHQIFLQM---------PVRNL-------------- 149
            GC D + ++A+  ++A    + F   +FL +          VR L              
Sbjct: 149 PGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKD 208

Query: 150 -ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
            +T+N++I+G+ ++G   EA+ +F  M + G KP   +F GVL A
Sbjct: 209 SVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKA 253



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K+ +  + ++  Y K G +  A  +F  MP R ++TW  ++  +A N   +EA ++F  M
Sbjct: 73  KNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQM 132

Query: 176 TEGGTKPDHVSFIGVLSACS 195
               T PD+V+F  +L  C+
Sbjct: 133 CRSCTLPDYVTFTTLLPGCN 152


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  271 bits (692), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 205/330 (62%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G E+H ++I  G+  +  V ++LVDMY KCG+++++ ++ D+  +K  VS +A++ G
Sbjct: 500 LNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISG 559

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +      E   + F  M E+    D F++  VL  CA LA + LGK++H Q I++    D
Sbjct: 560 FSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSD 619

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I S LVD+Y+KCG +  +  +F + P R+ +TWN+M+ G+A +G GEEAL++F+ M  
Sbjct: 620 VYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQL 679

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP+H +F+ VL AC+HMGL+D+G  +F  M  EY + P+ EHY+CMVD+LGR+G ++
Sbjct: 680 VNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRID 739

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  L++      D+ +W  LL  C    N  VAE+  + +++L P    + VLL N+Y 
Sbjct: 740 EALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDPQDSSACVLLSNIYA 799

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             G W +  ++R +M+++ +KK PG SWIE
Sbjct: 800 DAGMWGNVSEMRKMMRHNKLKKEPGCSWIE 829



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 148/260 (56%), Gaps = 6/260 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G++VH   +      N+ V ++++DMYGKC  + E+  +FD M ++++VS +A++    
Sbjct: 401 EGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACE 460

Query: 64  QTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G+ E  +  F  M     E D F++G VL+ACAG  AL  G E+H + I+     D  
Sbjct: 461 QNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSF 520

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +ALVD+Y KCG ++ A +I  +   + +++WN++ISGF+   + E+A + F  M E G
Sbjct: 521 VGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMG 580

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PD+ ++  VL  C+++  +  G++  A + K+  ++  +   + +VD+  + G ++++
Sbjct: 581 VNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQ-ELQSDVYICSTLVDMYSKCGNMQDS 639

Query: 240 ETLIENADCRHDSSLWEVLL 259
           + + E A  R D   W  +L
Sbjct: 640 QLMFEKAPNR-DFVTWNAML 658



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 156/289 (53%), Gaps = 14/289 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH  V+  G   +VV  S+L+ MY KC  +D+S  VF ++ +KN VS SA++ G  Q
Sbjct: 200 GVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQ 259

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                  + +F+EM+ + +      +  + R+CA L+ALRLGKE+H   ++ +   D+I+
Sbjct: 260 NDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIV 319

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A +D+YAKCG +  A ++   MP  +L ++N++I G+A++ RG +AL+ F  + + G 
Sbjct: 320 GTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGL 379

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D ++  G L+AC+ +     GR+      K   +   I   N ++D+ G+   L EA 
Sbjct: 380 GFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMS-NICVANAILDMYGKCKALAEAS 438

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRN-----AHVAERVAKKIMELKPD 284
            L +  + R D+  W  ++ AC    N     AH A  +  +   ++PD
Sbjct: 439 DLFDMME-RRDAVSWNAIIAACEQNGNEEETLAHFASMIHSR---MEPD 483



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 129/279 (46%), Gaps = 36/279 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+ HA++I  G      V + L+ MY KC  +D + +VFDKM  ++ VS ++++ G
Sbjct: 65  LNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISG 124

Query: 62  YCQTGDFESVIRIFREMEE----------------------IDLF-------------SF 86
           Y   G+ +   + F EM E                      ID+F             S 
Sbjct: 125 YASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASL 184

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            +VL+AC  L    +G +VH   ++     DV+  SAL+ +YAKC  +D +  +F ++P 
Sbjct: 185 AVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPE 244

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +N ++W++MI+G  QN R  E L +F +M   G       +  +  +C+ +  +  G K 
Sbjct: 245 KNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLG-KE 303

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
             S   +      I      +D+  + G + +A+ ++ +
Sbjct: 304 LHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSS 342



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 147/304 (48%), Gaps = 18/304 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GKE+H+  +      +++V ++ +DMY KCG + ++ +V   M K +  S +A++ G
Sbjct: 298 LRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVG 357

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y ++      ++ F+ + +     D  +    L ACA +     G++VH   ++     +
Sbjct: 358 YARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSN 417

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +A++D+Y KC  +  A  +F  M  R+ ++WN++I+   QNG  EE L  F  M  
Sbjct: 418 ICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIH 477

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN-----CMVDLLGR 232
              +PD  ++  VL AC+    ++ G      M    RI      ++      +VD+  +
Sbjct: 478 SRMEPDDFTYGSVLKACAGRQALNTG------MEIHTRIIKSGMGFDSFVGAALVDMYCK 531

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPDCHLSYV 290
            G++E+A+ + +  + +   S W  ++   +  + +  A +   +++E+   PD      
Sbjct: 532 CGMIEKADKIHDRTEQKTMVS-WNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAA 590

Query: 291 LLDN 294
           +LD 
Sbjct: 591 VLDT 594



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 4/108 (3%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +F  + + C+   +L  GK+ H + I         + + L+ +Y KC  +D+A ++F +M
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
            +R+++++NS+ISG+A  G  + A + F +M E     D VS+  V+S
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEMPE----RDVVSWNSVIS 154


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  271 bits (692), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK++HA VI      NV V S+LVDMY KC  +  +  VF +M +KN +S +A+L G
Sbjct: 286 LGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVG 345

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  ++IF EM+    E D F+ G V+ +CA LA+L  G + HC+ +       
Sbjct: 346 YGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISF 405

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+ LY KCG  + +H++F +M +R+ ++W ++++G+AQ G+  E + +F+ M  
Sbjct: 406 ITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLA 465

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+FIGVLSACS  GL+++G ++F SM KE+ I P ++H  C++DLLGRAG LE
Sbjct: 466 HGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLE 525

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I N  C  D   W  LL +C    +  + +  A  ++ L+P    SYVLL ++Y 
Sbjct: 526 EARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYA 585

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G+W+   ++R  M+   V+K PG SWI+   K++
Sbjct: 586 SKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVH 621



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 160/317 (50%), Gaps = 39/317 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGK------------------------------- 33
           G++++ +++  G   +V V S LVDMY K                               
Sbjct: 157 GRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMR 216

Query: 34  CGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
           CG+++ES R+F  + +++S+S + ++ G  Q G     + +FREM      +D F+FG V
Sbjct: 217 CGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSV 276

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L AC  L AL  GK++H   IR     +V + SALVD+Y+KC  +  A  +F +MP +N+
Sbjct: 277 LTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNV 336

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           I+W +M+ G+ QNG  EEA++IF +M   G +PD  +   V+S+C+++  ++ G + F  
Sbjct: 337 ISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQ-FHC 395

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
                 +   I   N ++ L G+ G  E +  L    + R + S W  LL     F  A+
Sbjct: 396 RALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVS-WTALLAGYAQFGKAN 454

Query: 270 VAERVAKKIME--LKPD 284
               + ++++   LKPD
Sbjct: 455 ETIGLFERMLAHGLKPD 471



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 129/277 (46%), Gaps = 37/277 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+   ++++ +Y K GL+ +  ++F+ M  ++ VS +  + GY   G     +R+++ M 
Sbjct: 70  NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLML 129

Query: 80  E-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
           +     ++  +F  +L  C+    + LG++++ Q ++     DV + S LVD+Y K G +
Sbjct: 130 KDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLI 189

Query: 135 DFAHQIFLQMPVRNL-------------------------------ITWNSMISGFAQNG 163
             A + F +MP RN+                               I+W  MI+G  QNG
Sbjct: 190 YDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNG 249

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
              EAL +F +M   G   D  +F  VL+AC  +  +  G++  A + +    K  +   
Sbjct: 250 LEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDH-KDNVFVG 308

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           + +VD+  +   ++ AET+ +    ++  S   +L+G
Sbjct: 309 SALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVG 345



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 63/236 (26%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  +L+ C         K++HC  ++     +  + + L+  Y K G + +AH +F  +P
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 146 VRNLITWNSM-------------------------------ISGFAQNGRGEEALRIFDD 174
             NL +WN++                               ISG+A  G   +A+R++  
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 175 M-TEGGTKPDHVSFIGVLSACSHMGLIDRGRK------HFASMTKEYRIKPKIEHY---- 223
           M  +     + ++F  +L  CS    +D GR+       F   +  +   P ++ Y    
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 224 --------------------NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
                               N M+  L R G++EE++ L      R DS  W +++
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKER-DSISWTIMI 242


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  271 bits (692), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 148/374 (39%), Positives = 219/374 (58%), Gaps = 42/374 (11%)

Query: 2   LKQGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKM------------- 47
           +++G ++HA+V+      N +V+ ++LVDMY KC  V+E+  VFD+M             
Sbjct: 268 IREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVS 327

Query: 48  ------------------LKKNSVSSSALLQGYCQTGDFESVIRIF----REMEEIDLFS 85
                             +++N VS +AL+ GY Q G+ E  +R+F    RE      ++
Sbjct: 328 GYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYT 387

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIR-----RSG-CKDVIIESALVDLYAKCGCVDFAHQ 139
           FG +L ACA LA L+LG++ H   ++     +SG   D+ + ++L+D+Y KCG V+    
Sbjct: 388 FGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRL 447

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +M  R+ ++WN+MI G+AQNG G EAL IF +M   G +PDHV+ IGVLSACSH GL
Sbjct: 448 VFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGL 507

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           ++ GR +F SMT E+ + P  +HY CMVDLLGRAG L+EA  LI+      D+ +W  LL
Sbjct: 508 VEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLL 567

Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
            AC    N  + + VA++++E+ P     YVLL N+Y  +GRW D  ++R  M+  GV K
Sbjct: 568 AACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIK 627

Query: 320 MPGKSWIEANSKLN 333
            PG SWI   S L+
Sbjct: 628 QPGCSWISIQSHLH 641



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 139/281 (49%), Gaps = 35/281 (12%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL---- 59
           + + VHA++I       + +++ LVD+YGKCG ++++ +VFD M ++N+ S +A+L    
Sbjct: 37  EARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALT 96

Query: 60  ---------------------------QGYCQTGDFESVIRIFREMEEIDL----FSFGI 88
                                       G+ Q   FE  +R   +M   D     +SFG 
Sbjct: 97  KFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGS 156

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
            L ACAGL  L +G ++H    +     DV + SALVD+Y+KC  V  A + F  M VRN
Sbjct: 157 ALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRN 216

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +++WNS+I+ + QNG   +AL +F  M   G +PD ++   V SAC+ +  I  G +  A
Sbjct: 217 IVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHA 276

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
            + K  + +  +   N +VD+  +   + EA  + +    R
Sbjct: 277 RVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 148/300 (49%), Gaps = 41/300 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H  +       +V + S+LVDMY KC +V  + R FD M  +N VS ++L+  
Sbjct: 167 LSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITC 226

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y Q G     + +F  M     E D  +   V  ACA L+A+R G ++H + ++    + 
Sbjct: 227 YEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRN 286

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPV------------------------------ 146
           D+++ +ALVD+YAKC  V+ A  +F +MP+                              
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMM 346

Query: 147 -RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN+++WN++I+G+ QNG  EEA+R+F  +      P H +F  +L+AC+++  +  GR+
Sbjct: 347 ERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQ 406

Query: 206 HFASMTKE-YRIK----PKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
               + K  +  K      I   N ++D+  + GL+E+   + E    R + S   +++G
Sbjct: 407 AHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVG 466



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 37/248 (14%)

Query: 71  VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
           V ++  ++  +D   F  +L  C    ++   + VH + I+     ++ I++ LVD+Y K
Sbjct: 7   VRKVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGK 66

Query: 131 CGCVDFAHQIF--LQ-----------------------------MPVRNLITWNSMISGF 159
           CG ++ A ++F  +Q                             MP R+  +WN+M+SGF
Sbjct: 67  CGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGF 126

Query: 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKP 218
           AQ  R EEALR   DM       +  SF   LSAC+  GL+D         +  + R   
Sbjct: 127 AQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACA--GLMDLSIGVQIHGLIAKSRYSL 184

Query: 219 KIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
            +   + +VD+  +  ++  A+   ++ D R+  S W  L+        A  A  V  ++
Sbjct: 185 DVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVS-WNSLITCYEQNGPAGKALEVFVRM 243

Query: 279 ME--LKPD 284
           M   ++PD
Sbjct: 244 MNCGIEPD 251


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 214/336 (63%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++HA +   G+  ++   +SL+ MY K GL++E+  +FD++  K+++S  ALL G
Sbjct: 322 LRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSG 381

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E    +F++M+    + D+ +   ++ AC+ LAAL+ G+  H   I R    +
Sbjct: 382 YVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALE 441

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I ++L+D+YAKCG +D + Q+F +MP R++++WN+MI+G+  +G G+EA  +F  M  
Sbjct: 442 TSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKN 501

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD V+FI +++ACSH GL+  G+  F +MT +Y I P++EHY CMVDLL R G L+
Sbjct: 502 QGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLD 561

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I++   + D  +W  LLGAC   +N  + ++V++ I +L P+   ++VLL N++ 
Sbjct: 562 EAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFS 621

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GR+++A ++R + K  G KK PG SWIE N  L+
Sbjct: 622 AAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLH 657



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 137/268 (51%), Gaps = 12/268 (4%)

Query: 2   LKQGKEVHAKVITLGLCGN---VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           L QG  VHA  +   L  N   V++ ++L+DMY KC  +  + RVF  M  +N V+ SAL
Sbjct: 217 LFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSAL 276

Query: 59  LQGYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           + G+           +F++M       +   S    LR CA LA LR+G ++H    +  
Sbjct: 277 IGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSG 336

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D+   ++L+ +YAK G ++ A  +F ++ +++ I++ +++SG+ QNG+ EEA  +F 
Sbjct: 337 IHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFK 396

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            M     +PD  + + ++ ACSH+  +  GR  H + + +   ++  I   N ++D+  +
Sbjct: 397 KMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSI--CNSLIDMYAK 454

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLG 260
            G ++ +  + +    R D   W  ++ 
Sbjct: 455 CGRIDLSRQVFDKMPAR-DIVSWNTMIA 481



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 138/291 (47%), Gaps = 13/291 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +HA    +GL  ++ V ++L+D+Y +C     +  VF KM  ++ V+ +A+L GY  
Sbjct: 118 GRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYAN 177

Query: 65  TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRR---SGCK 116
            G +   I    +M++      +  +   +L   A   AL  G  VH   +R       +
Sbjct: 178 HGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEE 237

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM- 175
            V+I +AL+D+YAKC  + +A ++F  M VRN +TW+++I GF    R  EA  +F DM 
Sbjct: 238 QVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDML 297

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            EG       S    L  C+ +  +  G +  A + K   I   +   N ++ +  +AGL
Sbjct: 298 VEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKS-GIHADLTAGNSLLSMYAKAGL 356

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
           + EA  L +    + D+  +  LL        A  A  V KK+    ++PD
Sbjct: 357 INEATMLFDEIAIK-DTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPD 406



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 119/233 (51%), Gaps = 8/233 (3%)

Query: 35  GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVL 90
           G +  + +VFD++   ++ + +AL++ Y   G F + I ++R M    +    ++F  VL
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
           +AC+ LA L  G+ +H          D+ + +AL+DLY +C     A  +F +MP+R+++
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTE-GGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
            WN+M++G+A +G    A+    DM + GG +P+  + + +L   +  G + +G    A 
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY 226

Query: 210 MTKEY--RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             + Y  + + ++     ++D+  +   L  A  +      R++ + W  L+G
Sbjct: 227 CLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVT-WSALIG 278


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 136/330 (41%), Positives = 209/330 (63%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+GK++H  +I  G+  +  V +SL+ MY KCG++D +    D+M+ K++VS SA++ G
Sbjct: 328 LKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISG 387

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFG----IVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  + IFR+M+   +  +      +L AC+ LAAL+ G   H   + R    D
Sbjct: 388 CVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTND 447

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I +A++D+Y+KCG +  + +IF +M  R++I+WN+MI G+  +G   EAL +F ++  
Sbjct: 448 TSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQA 507

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+ I VLSACSH GL+  G+  F+SM++ + IKP++ HY CMVDLL RAG L+
Sbjct: 508 LGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLD 567

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA T I+      +  +W  LL AC T +N  + E+V+KKI  L P+   ++VL+ N+Y 
Sbjct: 568 EAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYS 627

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           +VGRW+DA  IR++ ++ G KK PG SW+E
Sbjct: 628 SVGRWDDAAYIRSIQRHHGYKKSPGCSWVE 657



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 115/207 (55%), Gaps = 5/207 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QGK +HA  I      NVV++++L+DMY KC L+  + ++F+ + KKN V  SA++ G
Sbjct: 226 LHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGG 285

Query: 62  YCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y         + ++ +M  I        +   +LRACA L  L+ GK++HC  I+     
Sbjct: 286 YVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDL 345

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + ++L+ +YAKCG +D A     +M  ++ ++++++ISG  QNG  E+AL IF  M 
Sbjct: 346 DTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQ 405

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRG 203
             G  P   + I +L ACSH+  +  G
Sbjct: 406 SSGIAPYLETMIALLPACSHLAALQHG 432



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 132/268 (49%), Gaps = 9/268 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS--VSSSALL 59
           L+ G+ +H     LGL  ++ V ++L+ MY KCG + ++  +F+ +  ++   V+ +A++
Sbjct: 123 LQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMI 182

Query: 60  QGYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
             +         I    +M++  +     +   +L       AL  GK +H  YIR    
Sbjct: 183 AAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFF 242

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +V++++AL+D+YAKC  + +A +IF  +  +N + W++MI G+  +    +AL ++DDM
Sbjct: 243 DNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDM 302

Query: 176 T-EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
               G  P   +   +L AC+ +  + RG+K    M K   +       N ++ +  + G
Sbjct: 303 LCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKS-GMDLDTTVGNSLISMYAKCG 361

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGAC 262
           +++ A   ++    + D+  +  ++  C
Sbjct: 362 IMDNAVGFLDEMIAK-DTVSYSAIISGC 388



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 111/230 (48%), Gaps = 8/230 (3%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRA 92
           +  +  VFD++ K + V  + +++ Y  +G F+  I ++  M ++ +    F+F  +L+A
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF--LQMPVRNLI 150
           C+ L AL+LG+ +H          D+ + +AL+ +YAKCG +  A  +F  +    R+++
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIV 176

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
            WN+MI+ F+ +    + +     M + G  P+  + + +L        + +G+   A  
Sbjct: 177 AWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYY 236

Query: 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            + +     +     ++D+  +  LL  A  +    + ++D   W  ++G
Sbjct: 237 IRNFFFDNVVLQ-TALLDMYAKCHLLFYARKIFNTVNKKNDVC-WSAMIG 284



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 12/134 (8%)

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           +  A  +F Q+P  +++ WN MI  +A +G  ++++ ++  M + G  P + +F  +L A
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 194 CSHMGLIDRGR-----KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADC 248
           CS +  +  GR      H   ++ +  +   + H      +  + G L +A+TL  +   
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLH------MYAKCGHLYQAQTLFNSISH 170

Query: 249 R-HDSSLWEVLLGA 261
           +  D   W  ++ A
Sbjct: 171 QDRDIVAWNAMIAA 184


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 137/331 (41%), Positives = 207/331 (62%), Gaps = 6/331 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +   +++ GL  N  + +SL+DMY KCG VD + ++FD+M K++ V+ SA++ G
Sbjct: 238 LEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISG 297

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y Q    +  + +F EM++ +++   +    VL +CA L A   GK VH  YI++   K 
Sbjct: 298 YAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHF-YIKKKKMKL 356

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V + + L+D YAKCG +D + ++F +M  +N+ TW ++I G A NG G+ AL  F  M 
Sbjct: 357 TVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSML 416

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E   KP+ V+FIGVLSACSH  L+D+GR  F SM +++ I+P+IEHY CMVD+LGRAG L
Sbjct: 417 ENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFL 476

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA   I+N     ++ +W  LL +C   +N  +AE+  + I  L+P     Y+LL N Y
Sbjct: 477 EEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTY 536

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             VGR  DA ++R+L+K   +KK+PG S IE
Sbjct: 537 ALVGRVEDAIRVRSLIKEKEIKKIPGCSLIE 567



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 149/244 (61%), Gaps = 9/244 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G++VHA ++  G   N  VE++L+ MY  CG +  +  VFD M +++ V+ +++L G
Sbjct: 137 LREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSG 196

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + G ++ V+++FR++ E+    D  +   VL AC  LA L +G E+  +YI   G + 
Sbjct: 197 YTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIG-ELIGEYIVSKGLRR 255

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + ++L+D+YAKCG VD A ++F +M  R+++ W++MISG+AQ  R +EAL +F +M 
Sbjct: 256 NNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQ 315

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           +G   P+ V+ + VL +C+ +G  + G+  HF    K+ ++K  +     ++D   + G 
Sbjct: 316 KGNVYPNEVTMVSVLYSCAMLGAYETGKWVHF--YIKKKKMKLTVTLGTQLIDFYAKCGY 373

Query: 236 LEEA 239
           ++ +
Sbjct: 374 IDRS 377



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 121/232 (52%), Gaps = 14/232 (6%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRA 92
           +D +  +F+ + K  S + + +++G       ++ + +F++M E     D F+F  VL+A
Sbjct: 71  IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
           C+ + ALR G++VH   ++     +  +E+ L+ +YA CG +  A  +F  MP R+++ W
Sbjct: 131 CSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAW 190

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           NSM+SG+ +NG  +E +++F  + E   + D V+ I VL AC  +  ++ G      +  
Sbjct: 191 NSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGE-----LIG 245

Query: 213 EYRIKPKIEHYNC----MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           EY +   +   N     ++D+  + G ++ A  L +  D R D   W  ++ 
Sbjct: 246 EYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKR-DVVAWSAMIS 296


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 132/333 (39%), Positives = 208/333 (62%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC- 63
           G+E+H  V+  G+  + VV S+L DMY KCG VD++  VFD+M  ++ VS +A+++ Y  
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFD 240

Query: 64  --QTGD-FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             + G+ F   +R+ R   + + F++  VLRACA   + +LGK+VH +  +         
Sbjct: 241 ARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFA 300

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           ESALV +Y+K G +  A ++F  MP  +L++W +MISG+AQNG+ +EALR FD +   G 
Sbjct: 301 ESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGC 360

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PDHV+F+GVLSAC+H GL+D+G   F S+  EY I+   +HY C++DLL R+GL E AE
Sbjct: 361 RPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAE 420

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            +I     + +  LW  LLG C   +N  +A   A+ + E++P+   +YV L N+Y +VG
Sbjct: 421 EMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVTLANIYASVG 480

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            +++    R +M+  G+ KMP  SWIE  ++++
Sbjct: 481 LFDEVENTRRIMELKGITKMPASSWIEVGTRMH 513



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 7/177 (3%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-------IDLFSFGIVLRACAG 95
           +FD+M +++  S SA++  + + G   + + I+R M          + F+    L A   
Sbjct: 115 LFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAAATA 174

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
               R G+E+HC  +RR    D ++ SAL D+YAKCG VD A  +F +MPVR++++W +M
Sbjct: 175 ARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAM 234

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           +  +    R  E  R+F  M   G +P+  ++ GVL AC+       G++    MTK
Sbjct: 235 VERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTK 291


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 209/337 (62%), Gaps = 4/337 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RL+QGK++HA VI +    ++ V S ++DMY KCG +  + +VF+++   + V+ + ++ 
Sbjct: 515 RLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVIS 574

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G  + G+ E  +  + +M     + D ++F  +++AC+ L AL  GK++H   ++ +   
Sbjct: 575 GCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAF 634

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + ++LVD+YAKCG ++ A+ +F +M  R++  WN+MI G AQ+G  EEAL  F++M 
Sbjct: 635 DPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMK 694

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  PD V+FIGVLSACSH GL     K+F SM K Y ++P+IEHY+C+VD L RAG +
Sbjct: 695 SRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHI 754

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EAE ++ +      ++++  LL AC    +    ERVA+K+  + P    +YVLL N+Y
Sbjct: 755 QEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIY 814

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A  +W +A   R +MK   VKK PG SWI+  +K++
Sbjct: 815 AAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVH 851



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 140/272 (51%), Gaps = 8/272 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH   +  G+  +  V ++L+D+Y K G ++E+  +F      +  S +A++ G+  
Sbjct: 418 GRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTV 477

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           + ++   +R+F  M    E+ D  +F    +A   L  L+ GK++H   I+     D+ +
Sbjct: 478 SDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFV 537

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            S ++D+Y KCG +  A ++F Q+P  + + W ++ISG  +NG  E+AL  +  M   G 
Sbjct: 538 ISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGV 597

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           +PD  +F  ++ ACS +  +++G++  A++ K      P +     +VD+  + G +E+A
Sbjct: 598 QPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV--MTSLVDMYAKCGNIEDA 655

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
             L    + R   +LW  ++       NA  A
Sbjct: 656 YGLFRRMNTR-SVALWNAMIVGLAQHGNAEEA 686



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 136/266 (51%), Gaps = 7/266 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H  V+  G    V V +S ++MY K G V+ + R+F +M + + +S + ++ G
Sbjct: 313 LELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISG 372

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLA-ALRLGKEVHCQYIRRSGCK 116
             ++G  E  +R+F ++       D F+   VLRAC+ L  +  +G++VH   ++     
Sbjct: 373 CARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVL 432

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + +AL+D+Y+K G ++ A  +F      +L +WN+M+ GF  +    EALR+F  M 
Sbjct: 433 DSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMH 492

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E G K D ++F     A   +  + +G++  A + K  R    +   + ++D+  + G +
Sbjct: 493 ERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIK-MRFHYDLFVISGILDMYLKCGEM 551

Query: 237 EEAETLIENADCRHDSSLWEVLLGAC 262
           + A  +  N     D   W  ++  C
Sbjct: 552 KSARKVF-NQIPSPDDVAWTTVISGC 576



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 9/222 (4%)

Query: 59  LQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           L  Y Q G+    +  FR+M +     D  ++ ++L   A L  L LGK++H   +R   
Sbjct: 269 LSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGW 328

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            + V + ++ +++Y K G V++A ++F QM   +LI+WN++ISG A++G  E +LR+F D
Sbjct: 329 DQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFID 388

Query: 175 MTEGGTKPDHVSFIGVLSACSHM-GLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGR 232
           +   G  PD  +   VL ACS +      GR+ H  ++     +   +     ++D+  +
Sbjct: 389 LLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVS--TALIDVYSK 446

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
            G +EEAE L  N D   D + W  ++   T   N   A R+
Sbjct: 447 GGKMEEAELLFHNQDG-FDLASWNAMMHGFTVSDNYREALRL 487



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 12/210 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALLQGY 62
           GK  HA ++T GL  +  V ++L+ MY KCG +  + ++FD   +  ++ V+ +A+L  Y
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 63  CQTGDFESV------IRIFREMEEIDLFSFGIVLRACAGLAAL---RLGKEVHCQYIRRS 113
             TG+   V        IFR + +  + +    L     L  L       E    Y  + 
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKI 151

Query: 114 GCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           G + DV +  ALV++YAK   +  A  +F +MPVR+++ WN M+  + + G G+E L +F
Sbjct: 152 GLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLF 211

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
                 G +PD VS   +L       + +R
Sbjct: 212 SAFHRSGLRPDCVSVRTILMGVGKKTVFER 241



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 87/193 (45%), Gaps = 23/193 (11%)

Query: 13  ITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVI 72
           + +GL  +V V  +LV++Y K   + E+  +FD+M  ++ V  + +++ Y + G  + V+
Sbjct: 149 VKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVL 208

Query: 73  RIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132
            +F       L         C  +  + +G             K  + E  L  + A   
Sbjct: 209 GLFSAFHRSGLRP------DCVSVRTILMGVG-----------KKTVFERELEQVRA--- 248

Query: 133 CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
              +A ++F+     ++  WN  +S + Q G G EA+  F DM +     D +++I +LS
Sbjct: 249 ---YATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILS 305

Query: 193 ACSHMGLIDRGRK 205
             + +  ++ G++
Sbjct: 306 VVASLNHLELGKQ 318



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 18/185 (9%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-- 146
           +LR     + L LGK  H   +      D  + + L+ +YAKCG +  A ++F   P   
Sbjct: 19  ILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSD 78

Query: 147 RNLITWNSMISGFAQNG------RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           R+L+T+N++++ +A  G      +  EA  IF  + +        +   +   C     +
Sbjct: 79  RDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLC-----L 133

Query: 201 DRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
             G    +   + Y +K  ++        +V++  +   + EA  L +    R D  LW 
Sbjct: 134 LYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR-DVVLWN 192

Query: 257 VLLGA 261
           V++ A
Sbjct: 193 VMMKA 197


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  270 bits (690), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/320 (39%), Positives = 205/320 (64%), Gaps = 4/320 (1%)

Query: 18  CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFRE 77
           C N+   ++++  YG+ G + ++ ++FD M +++ VS +A++ GY Q G +E  + +F E
Sbjct: 322 CRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVE 381

Query: 78  M----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133
           M    E  +  +F   L  CA +AAL LGK+VH Q ++        + +AL+ +Y KCG 
Sbjct: 382 MKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGS 441

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
            D A+ +F  +  +++++WN+MI+G+A++G G +AL +F+ M + G KPD ++ +GVLSA
Sbjct: 442 TDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSA 501

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           CSH GLIDRG ++F SM ++Y +KP  +HY CM+DLLGRAG LEEAE L+ N      ++
Sbjct: 502 CSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAA 561

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
            W  LLGA     N  + E+ A+ + +++P     YVLL N+Y A GRW D  K+R+ M+
Sbjct: 562 SWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMR 621

Query: 314 YSGVKKMPGKSWIEANSKLN 333
            +GV+K+ G SW+E  +K++
Sbjct: 622 EAGVQKVTGYSWVEVQNKIH 641



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 130/283 (45%), Gaps = 28/283 (9%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E H K+  L    +VV  ++++  Y + G VDE+  VF+KM  +NS+S + LL  Y   G
Sbjct: 126 EAH-KLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNG 184

Query: 67  DFESVIRIFREMEEIDLFSF-----GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
             +   R+F      +L S+     G V R   G A          Q   R   +DVI  
Sbjct: 185 RLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDAR---------QLFDRMPVRDVISW 235

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + ++  YA+ G +  A ++F + P+R++ TW +M+SG+ QNG  +EA + FD+M      
Sbjct: 236 NTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM----PV 291

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            + +S+  +L+     G +   +   A    E      I  +N M+   G+ G + +A  
Sbjct: 292 KNEISYNAMLA-----GYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARK 346

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
           L +    R D   W  ++      +N H  E +    +E+K D
Sbjct: 347 LFDMMPQR-DCVSWAAIISGYA--QNGHYEEAL-NMFVEMKRD 385



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 128/264 (48%), Gaps = 18/264 (6%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           ++V  +  +  + + G  D + RVF+ M +++SVS +A++ GY +   F     +F +M 
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMP 104

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E DLFS+ ++L    G    R   E H +       KDV+  +A++  YA+ G VD A +
Sbjct: 105 ERDLFSWNVML---TGYVRNRRLGEAH-KLFDLMPKKDVVSWNAMLSGYAQNGFVDEARE 160

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +MP RN I+WN +++ +  NGR +EA R+F    E  +  + +S+  ++       +
Sbjct: 161 VFNKMPHRNSISWNGLLAAYVHNGRLKEARRLF----ESQSNWELISWNCLMGGYVKRNM 216

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +   R+ F  M     I      +N M+    + G L +A+ L   +  R D   W  ++
Sbjct: 217 LGDARQLFDRMPVRDVIS-----WNTMISGYAQVGDLSQAKRLFNESPIR-DVFTWTAMV 270

Query: 260 GACTTFRNAHVAERVAKKIMELKP 283
                 +N  V E  A+K  +  P
Sbjct: 271 SGYV--QNGMVDE--ARKYFDEMP 290



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 6/171 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VH +V+  G      V ++L+ MY KCG  DE++ VF+ + +K+ VS + ++ G
Sbjct: 407 LELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAG 466

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G     + +F  M++     D  +   VL AC+    +  G E      R    K 
Sbjct: 467 YARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKP 526

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGE 166
                + ++DL  + G ++ A  +   MP      +W +++     +G  E
Sbjct: 527 TSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTE 577


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  270 bits (690), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 217/338 (64%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNV--VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           ++ G ++HA +IT G   ++  ++ S++VD+Y KCG + E+ +VFD++ +KN +S SAL+
Sbjct: 222 IRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALI 281

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           QG+ Q G+    + +FR++ E    +D F   I++   A LA +  GK++HC  ++    
Sbjct: 282 QGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSG 341

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D+ + ++++D+Y KCG  + A ++F +M VRN+++W  MI+G+ ++G GE+A+ +F+ M
Sbjct: 342 LDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRM 401

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G + D V+++ +LSACSH GLI   +++F+ +   +++KP IEHY CMVD+LGRAG 
Sbjct: 402 QLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQ 461

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L+EA+ LIEN   + +  +W+ LL AC    N  +   V + +  +  D  ++YV++ N+
Sbjct: 462 LKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNI 521

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           Y   G W +  ++R L+K  G+KK  G+SW+E N +++
Sbjct: 522 YAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIH 559



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 152/262 (58%), Gaps = 8/262 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QG +VHA  + +G   ++++ + L+DMYGKC  VD +  VFD+ML++N VS +AL+ GY 
Sbjct: 22  QGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYL 81

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV- 118
           Q G+ +  + +  EM     + + F+F   L+AC  L  +  G ++H   ++ SG + V 
Sbjct: 82  QEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVK-SGFEWVS 140

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ +A +D+Y+KCG +  A Q+F +MP RNL++WN+MI+G    G G ++L +F  M   
Sbjct: 141 VVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQ 200

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASM-TKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  PD  +F   L AC  +G I  G +  AS+ T+ + I  +    + +VDL  + G L 
Sbjct: 201 GEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLF 260

Query: 238 EAETLIENADCRHDSSLWEVLL 259
           EA+ + +  + ++  S W  L+
Sbjct: 261 EAQKVFDRIEQKNLIS-WSALI 281



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 142/264 (53%), Gaps = 8/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G ++H   +  G     VV ++ +DMY KCG +  + +VF+KM  +N VS +A++ G
Sbjct: 121 VENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAG 180

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G+    + +F+ M    E  D F+F   L+AC  L A+R G ++H   I R     
Sbjct: 181 HTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPIS 240

Query: 118 V--IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +  II SA+VDLYAKCG +  A ++F ++  +NLI+W+++I GFAQ G   EA+ +F  +
Sbjct: 241 IRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQL 300

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E  +  D      ++   + + L+++G++    + K       I   N ++D+  + GL
Sbjct: 301 RESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILK-VPSGLDISVANSIIDMYLKCGL 359

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
            EEAE L      R+  S W V++
Sbjct: 360 TEEAERLFSEMQVRNVVS-WTVMI 382



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 4/176 (2%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +LR C+       G +VH   +      D+I+ + L+D+Y KC  VD A  +F +M  RN
Sbjct: 10  LLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERN 69

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HF 207
           +++W +++ G+ Q G  + +L +  +M   G KP+  +F   L AC  +G+++ G + H 
Sbjct: 70  VVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHG 129

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
             +   +     +   N  +D+  + G +  AE +      R+  S W  ++   T
Sbjct: 130 MCVKSGFEWVSVVG--NATIDMYSKCGRIGMAEQVFNKMPFRNLVS-WNAMIAGHT 182


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  270 bits (690), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 207/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VH KVI  GL  +  V S++VDMY KCG++DE+ ++ D++  +  VS +A+L G
Sbjct: 468 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSG 527

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +    + E   + F EM ++    D F+F  VL  CA LA + LGK++H Q I++    D
Sbjct: 528 FSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDD 587

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I S LVD+YAKCG +  +  +F ++  R+ ++WN+MI G+A +G G EALR+F+ M +
Sbjct: 588 EYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQK 647

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+H +F+ VL ACSH+GL D G ++F  MT  Y+++P++EH+ CMVD+LGR+   +
Sbjct: 648 ENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQ 707

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I +   + D+ +W+ LL  C   ++  +AE  A  ++ L PD    Y+LL NVY 
Sbjct: 708 EAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYA 767

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W D  + R L+K   +KK PG SWIE  S+++
Sbjct: 768 ESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMH 803



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 147/260 (56%), Gaps = 6/260 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QG++VH   I  G   ++ V ++++D+YGKC  + E++ +F  M +K+SVS +A++    
Sbjct: 369 QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALE 428

Query: 64  QTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G ++  I  F EM       D F++G VL+ACA L +L  G  VH + I+     D  
Sbjct: 429 QNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAF 488

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + S +VD+Y KCG +D A ++  ++  + +++WN+++SGF+ N   EEA + F +M + G
Sbjct: 489 VASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMG 548

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPDH +F  VL  C+++  I+ G++    + K+  +  +    + +VD+  + G + ++
Sbjct: 549 LKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYIS-STLVDMYAKCGDMPDS 607

Query: 240 ETLIENADCRHDSSLWEVLL 259
             + E  + R D   W  ++
Sbjct: 608 LLVFEKVEKR-DFVSWNAMI 626



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 137/279 (49%), Gaps = 10/279 (3%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            L  G +VHA  +  GL  +V   S+LVDMYGKC  +D++   F  M ++N VS  A + 
Sbjct: 164 ELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIA 223

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G  Q   +   + +F EM+ + L     S+    R+CA ++ L  G+++H   I+     
Sbjct: 224 GCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSS 283

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D ++ +A+VD+YAK   +  A + F  +P   + T N+M+ G  + G G EA+ +F  M 
Sbjct: 284 DRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMI 343

Query: 177 EGGTKPDHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
               + D VS  GV SAC+   G     + H  ++   + +   +   N ++DL G+   
Sbjct: 344 RSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVN--NAVLDLYGKCKA 401

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
           L EA  + +    + DS  W  ++ A    +N H  + +
Sbjct: 402 LMEAYLIFQGMK-QKDSVSWNAIIAALE--QNGHYDDTI 437



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 148/303 (48%), Gaps = 16/303 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++HA  I      + VV +++VD+Y K   + ++ R F  +      +S+A++ G
Sbjct: 266 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 325

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G     + +F    R     D+ S   V  ACA       G++VHC  I+     D
Sbjct: 326 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 385

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +A++DLY KC  +  A+ IF  M  ++ ++WN++I+   QNG  ++ +  F++M  
Sbjct: 386 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 445

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRA 233
            G KPD  ++  VL AC+ +  ++ G      M  +  IK  +       + +VD+  + 
Sbjct: 446 FGMKPDDFTYGSVLKACAALRSLEYGL-----MVHDKVIKSGLGSDAFVASTVVDMYCKC 500

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVL 291
           G+++EA+ L +    +   S W  +L   +  + +  A++   ++++  LKPD      +
Sbjct: 501 GIIDEAQKLHDRIGGQQVVS-WNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATV 559

Query: 292 LDN 294
           LD 
Sbjct: 560 LDT 562



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           + V  ++++  Y   G +  +  +FD M   + VS +AL+ GYCQ G F+  + +F EM 
Sbjct: 82  DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 D  +F ++L++C+ L  L LG +VH   ++     DV   SALVD+Y KC  +D
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A   F  MP RN ++W + I+G  QN +    L +F +M   G      S+     +C+
Sbjct: 202 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 261

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            M  ++ GR+  A   K      ++     +VD+  +A  L +A
Sbjct: 262 AMSCLNTGRQLHAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDA 304



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +D +  + ++  Y+  G +  A  +F  MP  ++++WN+++SG+ Q G  +E++ +F +M
Sbjct: 81  RDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEM 140

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  PD  +F  +L +CS +  +  G +  A   K   ++  +   + +VD+ G+   
Sbjct: 141 ARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKT-GLEIDVRTGSALVDMYGKCRS 199

Query: 236 LEEA 239
           L++A
Sbjct: 200 LDDA 203



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +  + + L+ +YA+C     A ++F  MP R+ ++WN+M++ ++  G    A+ +FD M
Sbjct: 50  PNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGM 109

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            +    PD VS+  ++S     G+       F  M +
Sbjct: 110 PD----PDVVSWNALVSGYCQRGMFQESVDLFVEMAR 142


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  270 bits (690), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 207/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VH KVI  GL  +  V S++VDMY KCG++DE+ ++ D++  +  VS +A+L G
Sbjct: 468 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSG 527

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +    + E   + F EM ++    D F+F  VL  CA LA + LGK++H Q I++    D
Sbjct: 528 FSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDD 587

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I S LVD+YAKCG +  +  +F ++  R+ ++WN+MI G+A +G G EALR+F+ M +
Sbjct: 588 EYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQK 647

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+H +F+ VL ACSH+GL D G ++F  MT  Y+++P++EH+ CMVD+LGR+   +
Sbjct: 648 ENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQ 707

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I +   + D+ +W+ LL  C   ++  +AE  A  ++ L PD    Y+LL NVY 
Sbjct: 708 EAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYA 767

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W D  + R L+K   +KK PG SWIE  S+++
Sbjct: 768 ESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMH 803



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 147/260 (56%), Gaps = 6/260 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QG++VH   I  G   ++ V ++++D+YGKC  + E++ +F  M +K+SVS +A++    
Sbjct: 369 QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALE 428

Query: 64  QTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G ++  I  F EM       D F++G VL+ACA L +L  G  VH + I+     D  
Sbjct: 429 QNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAF 488

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + S +VD+Y KCG +D A ++  ++  + +++WN+++SGF+ N   EEA + F +M + G
Sbjct: 489 VASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMG 548

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPDH +F  VL  C+++  I+ G++    + K+  +  +    + +VD+  + G + ++
Sbjct: 549 LKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYIS-STLVDMYAKCGDMPDS 607

Query: 240 ETLIENADCRHDSSLWEVLL 259
             + E  + R D   W  ++
Sbjct: 608 LLVFEKVEKR-DFVSWNAMI 626



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 137/279 (49%), Gaps = 10/279 (3%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            L  G +VHA  +  GL  +V   S+LVDMYGKC  +D++   F  M ++N VS  A + 
Sbjct: 164 ELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIA 223

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G  Q   +   + +F EM+ + L     S+    R+CA ++ L  G+++H   I+     
Sbjct: 224 GCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSS 283

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D ++ +A+VD+YAK   +  A + F  +P   + T N+M+ G  + G G EA+ +F  M 
Sbjct: 284 DRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMI 343

Query: 177 EGGTKPDHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
               + D VS  GV SAC+   G     + H  ++   + +   +   N ++DL G+   
Sbjct: 344 RSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVN--NAVLDLYGKCKA 401

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
           L EA  + +    + DS  W  ++ A    +N H  + +
Sbjct: 402 LMEAYLIFQGMK-QKDSVSWNAIIAALE--QNGHYDDTI 437



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 148/303 (48%), Gaps = 16/303 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++HA  I      + VV +++VD+Y K   + ++ R F  +      +S+A++ G
Sbjct: 266 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 325

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G     + +F    R     D+ S   V  ACA       G++VHC  I+     D
Sbjct: 326 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 385

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +A++DLY KC  +  A+ IF  M  ++ ++WN++I+   QNG  ++ +  F++M  
Sbjct: 386 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 445

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRA 233
            G KPD  ++  VL AC+ +  ++ G      M  +  IK  +       + +VD+  + 
Sbjct: 446 FGMKPDDFTYGSVLKACAALRSLEYGL-----MVHDKVIKSGLGSDAFVASTVVDMYCKC 500

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVL 291
           G+++EA+ L +    +   S W  +L   +  + +  A++   ++++  LKPD      +
Sbjct: 501 GIIDEAQKLHDRIGGQQVVS-WNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATV 559

Query: 292 LDN 294
           LD 
Sbjct: 560 LDT 562



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           + V  ++++  Y   G +  +  +FD M   + VS +AL+ GYCQ G F+  + +F EM 
Sbjct: 82  DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 D  +F ++L++C+ L  L LG +VH   ++     DV   SALVD+Y KC  +D
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A   F  MP RN ++W + I+G  QN +    L +F +M   G      S+     +C+
Sbjct: 202 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 261

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            M  ++ GR+  A   K      ++     +VD+  +A  L +A
Sbjct: 262 AMSCLNTGRQLHAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDA 304



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +D +  + ++  Y+  G +  A  +F  MP  ++++WN+++SG+ Q G  +E++ +F +M
Sbjct: 81  RDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEM 140

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  PD  +F  +L +CS +  +  G +  A   K   ++  +   + +VD+ G+   
Sbjct: 141 ARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKT-GLEIDVRTGSALVDMYGKCRS 199

Query: 236 LEEA 239
           L++A
Sbjct: 200 LDDA 203



 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + L+ +YA+C     A ++F  MP R+ ++WN+M++ ++  G    A+ +FD M + 
Sbjct: 53  FVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPD- 111

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
              PD VS+  ++S     G+       F  M +
Sbjct: 112 ---PDVVSWNALVSGYCQRGMFQESVDLFVEMAR 142


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  270 bits (689), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 209/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + QGK+VHA  I  G   ++ V S ++DMY KCG +  +   FD +   + V+ + L+ G
Sbjct: 540 INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISG 599

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G+ E  + +F +M  +    D F+   + +A + L AL  G+++H   ++ +   D
Sbjct: 600 CIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSD 659

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++LVD+YAKCG +D A+ +F ++ + N+  WN+M+ G AQ+G G+EAL++F  M  
Sbjct: 660 PFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMES 719

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+FIGVLSACSH GL+    K+  SM ++Y IKP+IEHY+C+ D LGRAGL++
Sbjct: 720 LGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVK 779

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE LI++      +S++  LL AC    +    +RVA K++EL+P    +YVLL N+Y 
Sbjct: 780 EAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYA 839

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A  +W++    RT+MK   VKK PG SWIE  +K++
Sbjct: 840 AASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 875



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 158/325 (48%), Gaps = 13/325 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K++H   I      +  V ++L+D Y +   + E+  +F +    + V+ +A++ G
Sbjct: 440 LSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRN-NFDLVAWNAMMSG 498

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q+ D    + +F  M    E  D F+   VL+ C  L A+  GK+VH   I+     D
Sbjct: 499 YTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLD 558

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S ++D+Y KCG +  A   F  +PV + + W ++ISG  +NG  E AL +F  M  
Sbjct: 559 LWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRL 618

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G  PD  +   +  A S +  +++GR+ H  ++       P +     +VD+  + G +
Sbjct: 619 MGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVG--TSLVDMYAKCGSI 676

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPDCHLSYVLLDN 294
           ++A  L +  +  + ++ W  +L           A ++ K++  L  KPD  ++++ + +
Sbjct: 677 DDAYCLFKRIEMMNITA-WNAMLVGLAQHGEGKEALQLFKQMESLGIKPD-KVTFIGVLS 734

Query: 295 VYRAVGRWNDAFK-IRTLMKYSGVK 318
                G  ++A+K IR++ +  G+K
Sbjct: 735 ACSHSGLVSEAYKYIRSMHRDYGIK 759



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 150/293 (51%), Gaps = 16/293 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH   + LGL   + V +SL++MY K   +  +  VF+ M +++ +S ++++ G
Sbjct: 338 LALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAG 397

Query: 62  YCQTG-DFESV---IRIFREMEEIDLFSFGIVLRACAGLA-ALRLGKEVHCQYIRRSGCK 116
             Q+  + E+V   +++ R   + D ++   VL+A + L   L L K++H   I+ +   
Sbjct: 398 IAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVA 457

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + +AL+D Y++  C+  A  +F +    +L+ WN+M+SG+ Q+  G + L +F  M 
Sbjct: 458 DSFVSTALIDAYSRNRCMKEAEVLFGRNNF-DLVAWNAMMSGYTQSHDGHKTLELFALMH 516

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           + G + D  +   VL  C  +  I++G++ H  ++   Y +   +   + ++D+  + G 
Sbjct: 517 KQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGD 574

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTF----RNAHVAERVAKKIMELKPD 284
           +  A+   ++     D + W  L+  C       R  HV  ++  ++M + PD
Sbjct: 575 MSAAQFAFDSIPVPDDVA-WTTLISGCIENGEEERALHVFSQM--RLMGVLPD 624



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 123/270 (45%), Gaps = 28/270 (10%)

Query: 53  VSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQ 108
           +S + +L GY   G + ++++ F +M E DL     +F +VL     L +L LG++VHC 
Sbjct: 288 ISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCM 347

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
            ++      + + ++L+++Y K   +  A  +F  M  R+LI+WNS+I+G AQ+    EA
Sbjct: 348 ALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEA 407

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHM--GLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           + +F  +   G KPDH +   VL A S +  GL    + H  ++         +     +
Sbjct: 408 VCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVS--TAL 465

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286
           +D   R   ++EAE L    +   D   W  ++   T   + H       K +EL    H
Sbjct: 466 IDAYSRNRCMKEAEVLFGRNN--FDLVAWNAMMSGYTQSHDGH-------KTLELFALMH 516

Query: 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
                        G  +D F + T++K  G
Sbjct: 517 KQ-----------GERSDDFTLATVLKTCG 535



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 11/196 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK  HA+++ L       + ++L+ MY KCG +  + RVFDKM +++ VS +++L  
Sbjct: 62  LMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAA 121

Query: 62  YCQTGD-----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q+ +      +    +FR + +  +++  + L     L  L  G     +      CK
Sbjct: 122 YAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKL-CLHSGYVCASESFHGYACK 180

Query: 117 -----DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                D  +  ALV++Y K G V     +F +MP R+++ WN M+  + + G  EEA+ +
Sbjct: 181 IGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 240

Query: 172 FDDMTEGGTKPDHVSF 187
                  G  P+ ++ 
Sbjct: 241 SSAFHTSGLHPNEITL 256



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           FG  LR     + L LGK  H + +      +  + + L+ +Y+KCG + +A ++F +MP
Sbjct: 50  FGF-LRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMP 108

Query: 146 VRNLITWNSMISGFAQNGRG-----EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
            R+L++WNS+++ +AQ+  G     +EA  +F  + +       ++   +L  C H G +
Sbjct: 109 ERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 168

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
               + F     +  +         +V++  + G ++E   L E    R D  LW ++L 
Sbjct: 169 -CASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVVLWNLMLK 226

Query: 261 A 261
           A
Sbjct: 227 A 227


>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
          Length = 586

 Score =  270 bits (689), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 209/362 (57%), Gaps = 36/362 (9%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           + G+++HA  +     G+ VV+SSLVDMY KCG  D+  +VFD M  KNSV  +AL+ GY
Sbjct: 98  RLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGY 157

Query: 63  CQTGDFESVIRIFREMEEIDLFSF------------------------------------ 86
              G  E  +++FR M   +LF++                                    
Sbjct: 158 ASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVL 217

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            IV+ A A LAA  LG+++H   +R     ++I+ +AL+D+Y+KC  +  A ++F  +  
Sbjct: 218 SIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITF 277

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R++I+W +M+ G AQ+GR EEAL ++D M   G KP+ V+F+G++ ACSH GL+ +GR+ 
Sbjct: 278 RDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQL 337

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SM  EY I P+++HY C +DLL R+G L EAE L+       D + W  LL ACT ++
Sbjct: 338 FESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYK 397

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           +A +  R++ K++EL+P    +Y+LL NVY   G+W+   K+R  M    ++K PG SWI
Sbjct: 398 DAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWI 457

Query: 327 EA 328
           EA
Sbjct: 458 EA 459



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 5/174 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +HA+++  GL  +    ++LV  Y K  L+ ++  +FD+  +++    S+LL     +  
Sbjct: 1   MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSAS 60

Query: 68  FESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
            E  + I R M   D      F    V    A L + RLG+++H  ++      D +++S
Sbjct: 61  PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKS 120

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +LVD+Y KCG  D   ++F  M  +N + W +++SG+A NGR EEAL++F  M 
Sbjct: 121 SLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMP 174


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  270 bits (689), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 208/336 (61%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G +VHA ++  GL  +  V   LVDMY + G    +  VF+++ ++++ S + ++ G
Sbjct: 470 LRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSG 529

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +T + E V+  FR M   ++     +  + L  C+ +A+L  G ++H   I+ SG   
Sbjct: 530 YAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIK-SGWNS 588

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++  ALVD+Y KCG +  A  +F +   R+ + WN++I G++Q+G G +AL  F  M +
Sbjct: 589 SVVSGALVDMYVKCGNIADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVD 648

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD ++F+GVLSACSH GL++ GRK+F S++  Y I P +EHY CMVD+L +AG L 
Sbjct: 649 EGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLV 708

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE+LI       DSS+W  +LGAC   RN  +AER A+++ EL+P    S +LL N+Y 
Sbjct: 709 EAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAERLFELEPHDASSSILLSNIYA 768

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            +GRW+D  ++R ++   GVKK PG SWIE N +++
Sbjct: 769 DLGRWSDVTRVRNILLDHGVKKEPGCSWIEINGQIH 804



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 141/260 (54%), Gaps = 8/260 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G+E+HA+++   L  +  +  SL++MY KCG + ++ RVFD M  ++ V+ +A++  
Sbjct: 66  LRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISA 125

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   GD +  + +F  M +  +    F+   VL+AC+G +  +   +VH Q ++ +G  D
Sbjct: 126 HTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDD 185

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + S+LV+ Y  CG +D A  + L +P R+ ++WN++++G+A++G     + I + +  
Sbjct: 186 PYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVA 245

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +    +   VL  C  +GL   G+   AS+ K       + + +C+V++  R    E
Sbjct: 246 SGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLN-SCLVEMYSRCLSAE 304

Query: 238 EAETL---IENADCRHDSSL 254
           EA  +   I+  D  H S++
Sbjct: 305 EAYEVFIRIDEPDVVHCSAM 324



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 145/277 (52%), Gaps = 8/277 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           +VH +V+ L    +  V SSLV+ Y  CG +D +  V   + +++ VS +ALL GY + G
Sbjct: 172 QVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHG 231

Query: 67  DFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
           D+  V+ I  ++    +EI  ++   VL+ C  L   + G+ VH   I+R    D ++ S
Sbjct: 232 DYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNS 291

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            LV++Y++C   + A+++F+++   +++  ++MIS F ++    EAL +F  M+  G KP
Sbjct: 292 CLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKP 351

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           +H  F+G+    S  G  +  R   A + K  + +   +   + ++++  + G +++A T
Sbjct: 352 NHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVG--DAILNMYVKVGAVQDA-T 408

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           +  +     D+  W  +L A  +  N     R+ K++
Sbjct: 409 VTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQM 445



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 120/258 (46%), Gaps = 7/258 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + VHA ++  G      V  ++++MY K G V ++   FD + + ++ S + +L  +   
Sbjct: 373 RSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSG 432

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
            + E  +RIF++M       + +++  VLR C  L  LR G +VH   ++     D  + 
Sbjct: 433 SNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVS 492

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
             LVD+YA+ GC   A  +F Q+  R+  +W  ++SG+A+    E+ +  F  M     +
Sbjct: 493 RMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIR 552

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P   +    LS CS M  +  G +  +   K       +     +VD+  + G + +AE 
Sbjct: 553 PSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNSSVVS--GALVDMYVKCGNIADAEM 610

Query: 242 LIENADCRHDSSLWEVLL 259
           L   ++ R D   W  ++
Sbjct: 611 LFHESETR-DQVAWNTII 627



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 133/279 (47%), Gaps = 11/279 (3%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G+ VHA VI  GL  + V+ S LV+MY +C   +E++ VF ++ + + V  SA++  +
Sbjct: 269 KYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCF 328

Query: 63  CQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAA----LRLGKEVHCQYIRRSGCKDV 118
            +       + +F +M  + +     +    AG+A+      L + VH  YI +SG   +
Sbjct: 329 DRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHA-YIVKSGFAML 387

Query: 119 I-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +  A++++Y K G V  A   F  +   +  +WN+++S F      E+ LRIF  M  
Sbjct: 388 KGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMAC 447

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G   +  +++ VL  C+ +  +  G +  A + K   ++   +    +VD+  ++G   
Sbjct: 448 EGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKS-GLQNDTDVSRMLVDMYAQSGCFT 506

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK 276
            A  + E    R D+  W V++   + +     AE+V +
Sbjct: 507 SACLVFEQLKER-DAFSWTVIM---SGYAKTEEAEKVVE 541



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 18/178 (10%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L+ CA    LR G+E+H + +R +   D  +  +L+++Y KCG +  A ++F  MP R++
Sbjct: 57  LQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDI 116

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH--F 207
           + W +MIS     G  ++AL +F  M + G  P+  +   VL ACS       G  H  F
Sbjct: 117 VAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACS-------GGSHSKF 169

Query: 208 ASMTKEYRIK------PKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
                   +K      P +   + +V+     G L+ AET++     R D S W  LL
Sbjct: 170 THQVHGQVVKLNGLDDPYVG--SSLVEAYTSCGELDAAETVLLGLPERSDVS-WNALL 224


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  270 bits (689), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 133/320 (41%), Positives = 205/320 (64%), Gaps = 4/320 (1%)

Query: 18  CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFRE 77
           C NV   ++++  Y + G+++E+  VFD M +K++VS +A+L  Y Q G  E  +++F E
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 78  M----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133
           M    E ++  +F  VL  CA +AAL  G ++H + IR        + +AL+ +Y KCG 
Sbjct: 374 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 433

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           ++ A   F +M  R++++WN+MI+G+A++G G+EAL IFD M    TKPD ++ +GVL+A
Sbjct: 434 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAA 493

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           CSH GL+++G  +F SM  ++ +  K EHY CM+DLLGRAG L EA  L+++     DS+
Sbjct: 494 CSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDST 553

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           +W  LLGA    RN  +    A+KI EL+P+    YVLL N+Y + G+W DA K+R +M+
Sbjct: 554 MWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMME 613

Query: 314 YSGVKKMPGKSWIEANSKLN 333
             GVKK+PG SWIE  +K++
Sbjct: 614 ERGVKKVPGFSWIEVQNKVH 633



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 14/242 (5%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI 81
           V  + ++  +   GLV  +   FD   +K++VS + +L  Y + G  E    +F    E 
Sbjct: 132 VTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW 191

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D+ S+  ++        +   +E+      R   +DV+  + +V  YA+ G +  A ++F
Sbjct: 192 DVISWNALMSGYVQWGKMSEAREL----FDRMPGRDVVSWNIMVSGYARRGDMVEARRLF 247

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
              PVR++ TW +++SG+AQNG  EEA R+FD M E     + VS+  +++A     ++D
Sbjct: 248 DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMD 303

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
             ++ F  M         +  +N M+    +AG+LEEA+ + +    + D+  W  +L A
Sbjct: 304 EAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357

Query: 262 CT 263
            +
Sbjct: 358 YS 359



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 8/193 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +V+  ++L+  Y + G + E+  +FD+M  ++ VS + ++ GY + GD     R+F    
Sbjct: 192 DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP 251

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
             D+F++  V+   A    L   + V      R    + +  +A+V  Y +   +D A +
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKE 307

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F  MP RN+ +WN+M++G+AQ G  EEA  +FD M +     D VS+  +L+A S  G 
Sbjct: 308 LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ----KDAVSWAAMLAAYSQGGC 363

Query: 200 IDRGRKHFASMTK 212
            +   + F  M +
Sbjct: 364 SEETLQLFIEMGR 376



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 121/264 (45%), Gaps = 18/264 (6%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80
           V+  +  +  + + G V ++ R+F  M ++++ + +A+L GY   G       +FR +  
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
            D +S+  +L A A  ++L   + +  +   R    D +  + ++  +A  G V  A   
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLARHY 153

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F   P ++ ++WN M++ + +NGR EEA  +F+  TE     D +S+  ++S     G +
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DVISWNALMSGYVQWGKM 209

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              R+ F  M         +  +N MV    R G + EA  L + A  R D   W  ++ 
Sbjct: 210 SEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARRLFDAAPVR-DVFTWTAVVS 263

Query: 261 ACTTFRNAHVAERVAKKIMELKPD 284
                +N  + E  A+++ +  P+
Sbjct: 264 GYA--QNGMLEE--ARRVFDAMPE 283



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 12/157 (7%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +VI  +  +  + + G V  A ++F  MP R+  T+N+M++G++ NGR   A  +F  +
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI 95

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                +PD+ S+  +L A +    +   R  F  M     +      YN M+      GL
Sbjct: 96  ----PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHANHGL 146

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
           +  A    + A  + D+  W  +L A    RN  V E
Sbjct: 147 VSLARHYFDLAPEK-DAVSWNGMLAAYV--RNGRVEE 180



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++H ++I  G      V ++L+ MY KCG ++++   F++M +++ VS + ++ G
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAG 458

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  +  + IF  M     + D  +   VL AC+    +  G           G   
Sbjct: 459 YARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 518

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMI 156
                + ++DL  + G +  AH +   MP     T W +++
Sbjct: 519 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  270 bits (689), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 150/367 (40%), Positives = 215/367 (58%), Gaps = 43/367 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYG----------------------------- 32
           +K GK +H  VI +G+   V ++++L+ MY                              
Sbjct: 320 VKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISG 379

Query: 33  --KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-------EIDL 83
             KCG V+++  +FD M +K+ VS SA++ GY Q   F   + +F EM+       E  L
Sbjct: 380 CMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETIL 439

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFL 142
            S   V+ AC  LAAL  GK VH  YIR++G K +VI+ + L+D+Y KCGCV+ A ++F 
Sbjct: 440 VS---VISACTHLAALDQGKWVHA-YIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFN 495

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            M  + + +WN++I G A NG  E +L +F +M   G  P+ ++F+GVL AC HMGL+D 
Sbjct: 496 GMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDE 555

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           GR HFASM +++ I+P ++HY CMVDLLGRAGLL EAE LIE+     D + W  LLGAC
Sbjct: 556 GRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGAC 615

Query: 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
               +  + ERV +K++EL+PD    +VLL N++ + G W D  ++R +MK  GV K PG
Sbjct: 616 KKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPG 675

Query: 323 KSWIEAN 329
            S IEAN
Sbjct: 676 CSLIEAN 682



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 131/262 (50%), Gaps = 45/262 (17%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GKE+H  V+ +G   +V V+++L++MY  CG + ++ ++FD+    +SVS +++L GY +
Sbjct: 160 GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVK 219

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
            GD E    IF +M +                                   ++++  +++
Sbjct: 220 KGDVEEAKLIFDQMPQ-----------------------------------RNIVASNSM 244

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           + L  K G V  A ++F +M  +++++W+++ISG+ QNG  EEAL +F +M   G + D 
Sbjct: 245 IVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDE 304

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRAGLLEEAE 240
           V  + VLSAC+H+ ++  G+     M     I+  IE Y    N ++ +   +G + +A+
Sbjct: 305 VVVVSVLSACAHLSIVKTGK-----MIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQ 359

Query: 241 TLIENADCRHDSSLWEVLLGAC 262
            L  N     D   W  ++  C
Sbjct: 360 KLF-NGSHNLDQISWNSMISGC 380



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 134/275 (48%), Gaps = 37/275 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+V  +S++ + GK G V E+ ++F++M +K+ VS SAL+ GY Q G +E  + +F EM 
Sbjct: 237 NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 296

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                +D      VL ACA L+ ++ GK +H   IR      V +++AL+ +Y+  G + 
Sbjct: 297 ANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIM 356

Query: 136 FAHQIFLQMPVRNLITWNSM-------------------------------ISGFAQNGR 164
            A ++F      + I+WNSM                               ISG+AQ+  
Sbjct: 357 DAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDC 416

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
             E L +F +M  G  +PD    + V+SAC+H+  +D+G+   A + K   +K  +    
Sbjct: 417 FSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKN-GLKVNVILGT 475

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            ++D+  + G +E A  +    + +  SS W  L+
Sbjct: 476 TLLDMYMKCGCVENALEVFNGMEEKGVSS-WNALI 509



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 157/338 (46%), Gaps = 30/338 (8%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLV--DESHRVFDKMLKKNSVSSSAL 58
            LKQ   + +++I  G   +    S L+        +  D S ++FD++   N    + +
Sbjct: 53  NLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTM 112

Query: 59  LQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           ++ Y Q+   E  + +++ M +     D +++ +V++ACA       GKE+H   ++   
Sbjct: 113 MRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGF 172

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             DV +++ L+++YA CG +  A ++F + PV + ++WNS+++G+ + G  EEA  IFD 
Sbjct: 173 DSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQ 232

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M +       V+   ++     MG +    K F  M ++  +      ++ ++    + G
Sbjct: 233 MPQRNI----VASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVS-----WSALISGYEQNG 283

Query: 235 LLEEAETL-IE-NAD-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVL 291
           + EEA  + IE NA+  R D  +   +L AC         + +   ++ +  +   SYV 
Sbjct: 284 MYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIE---SYVN 340

Query: 292 LDN----VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           L N    +Y   G   DA K+     ++G   +   SW
Sbjct: 341 LQNALIHMYSGSGEIMDAQKL-----FNGSHNLDQISW 373


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  270 bits (689), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 134/332 (40%), Positives = 207/332 (62%), Gaps = 4/332 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +GKE+H  VI  G+  +V + SSLVDMY K   +++S RVF ++  ++ +S ++L+ GY 
Sbjct: 260 KGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYV 319

Query: 64  QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G +   +R+FR+M    +     +F  V+ ACA LA L LGK++H   +R     ++ 
Sbjct: 320 QNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIF 379

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I SALVD+Y+KCG +  A +IF +M V + ++W ++I G A +G G EA+ +F++M   G
Sbjct: 380 IASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQG 439

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KP+ V+F+ VL+ACSH+GL+D    +F SMTK Y +  ++EHY  + DLLGRAG LEEA
Sbjct: 440 VKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEA 499

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
              I         S+W  LL +C+  +N  +AE+VA+KI  +  +   +YVL+ N+Y + 
Sbjct: 500 YNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASN 559

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           GRW +  K+R  M+  G++K P  SWIE  +K
Sbjct: 560 GRWKEMAKLRLRMRKKGLRKKPACSWIEMKNK 591



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 148/299 (49%), Gaps = 41/299 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC-GL------------------------ 36
           L+ G+ VH  ++ LG+  ++   ++L++MY K  G+                        
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDED 180

Query: 37  -----------VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL-- 83
                      +D   RVF+ M +K+ VS + ++ GY Q+G +E  +R+ REM   DL  
Sbjct: 181 VKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKP 240

Query: 84  --FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
             F+   VL   +    +  GKE+H   IR+    DV I S+LVD+YAK   ++ + ++F
Sbjct: 241 DSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
            ++  R+ I+WNS+++G+ QNGR  EALR+F  M     KP  V+F  V+ AC+H+  + 
Sbjct: 301 SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLH 360

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            G++    + +       I   + +VD+  + G ++ A  + +  +   + S   +++G
Sbjct: 361 LGKQLHGYVLRG-GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMG 418



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 138/319 (43%), Gaps = 43/319 (13%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           Q K++HA+ I      +    S ++ +Y    L+ E+  +F  +     ++  ++++ + 
Sbjct: 23  QAKQLHAQFIRTQSLSHTSA-SIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
               F   +  F EM       D   F  VL++C  +  LR G+ VH   +R     D+ 
Sbjct: 82  DQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 120 IESALVDLYAKC-------------------------------GC-----VDFAHQIFLQ 143
             +AL+++YAK                                 C     +D   ++F  
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEV 201

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP ++++++N++I+G+AQ+G  E+ALR+  +M     KPD  +   VL   S    + +G
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           ++    + ++  I   +   + +VD+  ++  +E++E +     CR D   W  L+    
Sbjct: 262 KEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR-DGISWNSLVAGYV 319

Query: 264 TFRNAHVAERVAKKIMELK 282
                + A R+ ++++  K
Sbjct: 320 QNGRYNEALRLFRQMVTAK 338



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 6/162 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H  V+  G   N+ + S+LVDMY KCG +  + ++FD+M   + VS +A++ G
Sbjct: 359 LHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMG 418

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     + +F EM+    + +  +F  VL AC+ +  +           +  G   
Sbjct: 419 HALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQ 478

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNL-ITWNSMIS 157
            +   +A+ DL  + G ++ A+    +M V      W++++S
Sbjct: 479 ELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLS 520


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  270 bits (689), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 139/330 (42%), Positives = 206/330 (62%), Gaps = 6/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+HA  + +GL  ++ V +SL+DMY KCG +  +  VF+   +K+ VS + L+ G
Sbjct: 479 LGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTS-RKDEVSYNILIIG 537

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +T D    + +F EM    ++ D+ SF  V+ ACA LAAL+ GKEVH   +R      
Sbjct: 538 YSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSH 597

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++L+D Y KCG +D A ++F Q+  +++ +WN+MI G+   G  E A+ +F+ M +
Sbjct: 598 LFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRD 657

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              + D VS+I VLSACSH GL++RG ++F+ M  + R++P   HY CMVDLLGRAG +E
Sbjct: 658 DTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVE 716

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI+      D+++W  LLGAC  + N  +  R A+ + ELKP     Y+LL N+Y 
Sbjct: 717 EAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYA 776

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             GRW++A KIR LMK  G KK PG SW++
Sbjct: 777 ETGRWDEANKIRELMKSRGAKKNPGCSWVQ 806



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 119/208 (57%), Gaps = 5/208 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K GKE+H   + +G   ++ + +SL+DMY K G   E+  +F  + ++N VS +A++  
Sbjct: 378 FKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIAN 437

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y         IR   +M+E     +  +F  VL ACA L  L  GKE+H   +R     D
Sbjct: 438 YALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSD 497

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++L+D+YAKCGC+  A  +F     ++ +++N +I G+++     ++L +F +M  
Sbjct: 498 LFVSNSLIDMYAKCGCLHSARNVF-NTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRL 556

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G KPD VSF+GV+SAC+++  + +G++
Sbjct: 557 LGKKPDVVSFVGVISACANLAALKQGKE 584



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 128/258 (49%), Gaps = 7/258 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + +H   + +GL   V   ++LVD YGKCG V    +VF++ ++KN VS ++++ G    
Sbjct: 281 RRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACK 340

Query: 66  GDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G     +  FR M     + +  +   +L     L   + GKE+H   +R     D+ I 
Sbjct: 341 GRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIA 400

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++L+D+YAK G    A  IF  +  RN+++WN+MI+ +A N    EA+R    M E G  
Sbjct: 401 NSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGEC 460

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+ V+F  VL AC+ +G +  G K   +M     +   +   N ++D+  + G L  A  
Sbjct: 461 PNAVTFTNVLPACARLGFLGPG-KEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARN 519

Query: 242 LIENADCRHDSSLWEVLL 259
           +   +  R D   + +L+
Sbjct: 520 VFNTS--RKDEVSYNILI 535



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 142/303 (46%), Gaps = 9/303 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G EVH  V  LG   +V V ++L+ +YG CG ++++ R+FD+M +++ VS + ++    
Sbjct: 177 KGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLS 236

Query: 64  QTGDFESV-----IRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
             GD+          I R + + +L S   +L   A L    + + +HC  ++      V
Sbjct: 237 VNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQV 296

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
              +ALVD Y KCG V    Q+F +   +N ++WNS+I+G A  GR  +AL  F  M + 
Sbjct: 297 TTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDA 356

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +P+ V+   +L     +     G K     +     +  I   N ++D+  ++G   E
Sbjct: 357 GAQPNSVTISSILPVLVELECFKAG-KEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTE 415

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A T+  N D R+  S W  ++      R    A R   ++ E   +C  + V   NV  A
Sbjct: 416 ASTIFHNLDRRNIVS-WNAMIANYALNRLPLEAIRFVIQMQE-TGECP-NAVTFTNVLPA 472

Query: 299 VGR 301
             R
Sbjct: 473 CAR 475



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 119/248 (47%), Gaps = 22/248 (8%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGK-------CGLVDESHR------VFDKM 47
           L Q K+VHA  I  G L  +V + +SL+  Y K       C L +++ +      +++ +
Sbjct: 70  LLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQNCRTAFLWNTL 129

Query: 48  LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHC 107
           ++ +S++ +    G      FE+  R+ R   ++D  +F  VL+ C+    +  G EVH 
Sbjct: 130 IRAHSIAWNGTFDG------FETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHG 183

Query: 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
              +     DV + + L+ LY  CG ++ A ++F +MP R++++WN++I   + NG   E
Sbjct: 184 VVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTE 243

Query: 168 ALRIFDDMT-EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           A   +  M      KP+ VS I +L   + +   +  R+      K   +  ++   N +
Sbjct: 244 ARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVK-VGLDSQVTTCNAL 302

Query: 227 VDLLGRAG 234
           VD  G+ G
Sbjct: 303 VDAYGKCG 310


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  270 bits (689), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 207/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VH KVI  GL  +  V S++VDMY KCG++DE+ ++ D++  +  VS +A+L G
Sbjct: 510 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSG 569

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +    + E   + F EM ++    D F+F  VL  CA LA + LGK++H Q I++    D
Sbjct: 570 FSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDD 629

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I S LVD+YAKCG +  +  +F ++  R+ ++WN+MI G+A +G G EALR+F+ M +
Sbjct: 630 EYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQK 689

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+H +F+ VL ACSH+GL D G ++F  MT  Y+++P++EH+ CMVD+LGR+   +
Sbjct: 690 ENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQ 749

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I +   + D+ +W+ LL  C   ++  +AE  A  ++ L PD    Y+LL NVY 
Sbjct: 750 EAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYA 809

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W D  + R L+K   +KK PG SWIE  S+++
Sbjct: 810 ESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMH 845



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 147/260 (56%), Gaps = 6/260 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QG++VH   I  G   ++ V ++++D+YGKC  + E++ +F  M +K+SVS +A++    
Sbjct: 411 QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALE 470

Query: 64  QTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G ++  I  F EM       D F++G VL+ACA L +L  G  VH + I+     D  
Sbjct: 471 QNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAF 530

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + S +VD+Y KCG +D A ++  ++  + +++WN+++SGF+ N   EEA + F +M + G
Sbjct: 531 VASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMG 590

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPDH +F  VL  C+++  I+ G++    + K+  +  +    + +VD+  + G + ++
Sbjct: 591 LKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYIS-STLVDMYAKCGDMPDS 649

Query: 240 ETLIENADCRHDSSLWEVLL 259
             + E  + R D   W  ++
Sbjct: 650 LLVFEKVEKR-DFVSWNAMI 668



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 137/278 (49%), Gaps = 10/278 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G +VHA  +  GL  +V   S+LVDMYGKC  +D++   F  M ++N VS  A + G
Sbjct: 207 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAG 266

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q   +   + +F EM+ + L     S+    R+CA ++ L  G+++H   I+     D
Sbjct: 267 CVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSD 326

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ +A+VD+YAK   +  A + F  +P   + T N+M+ G  + G G EA+ +F  M  
Sbjct: 327 RVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIR 386

Query: 178 GGTKPDHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              + D VS  GV SAC+   G     + H  ++   + +   +   N ++DL G+   L
Sbjct: 387 SSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVN--NAVLDLYGKCKAL 444

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
            EA  + +    + DS  W  ++ A    +N H  + +
Sbjct: 445 MEAYLIFQGMK-QKDSVSWNAIIAALE--QNGHYDDTI 479



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 148/303 (48%), Gaps = 16/303 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++HA  I      + VV +++VD+Y K   + ++ R F  +      +S+A++ G
Sbjct: 308 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 367

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G     + +F    R     D+ S   V  ACA       G++VHC  I+     D
Sbjct: 368 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 427

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +A++DLY KC  +  A+ IF  M  ++ ++WN++I+   QNG  ++ +  F++M  
Sbjct: 428 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 487

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRA 233
            G KPD  ++  VL AC+ +  ++ G      M  +  IK  +       + +VD+  + 
Sbjct: 488 FGMKPDDFTYGSVLKACAALRSLEYGL-----MVHDKVIKSGLGSDAFVASTVVDMYCKC 542

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVL 291
           G+++EA+ L +    +   S W  +L   +  + +  A++   ++++  LKPD      +
Sbjct: 543 GIIDEAQKLHDRIGGQQVVS-WNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATV 601

Query: 292 LDN 294
           LD 
Sbjct: 602 LDT 604



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           + V  ++++  Y   G +  +  +FD M   + VS +AL+ GYCQ G F+  + +F EM 
Sbjct: 124 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 183

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 D  +F ++L++C+ L  L LG +VH   ++     DV   SALVD+Y KC  +D
Sbjct: 184 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 243

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A   F  MP RN ++W + I+G  QN +    L +F +M   G      S+     +C+
Sbjct: 244 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 303

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            M  ++ GR+  A   K      ++     +VD+  +A  L +A
Sbjct: 304 AMSCLNTGRQLHAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDA 346



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +D +  + ++  Y+  G +  A  +F  MP  ++++WN+++SG+ Q G  +E++ +F +M
Sbjct: 123 RDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEM 182

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  PD  +F  +L +CS +  +  G +  A   K   ++  +   + +VD+ G+   
Sbjct: 183 ARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKT-GLEIDVRTGSALVDMYGKCRS 241

Query: 236 LEEA 239
           L++A
Sbjct: 242 LDDA 245



 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + L+ +YA+C     A ++F  MP R+ ++WN+M++ ++  G    A+ +FD M + 
Sbjct: 95  FVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPD- 153

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
              PD VS+  ++S     G+       F  M +
Sbjct: 154 ---PDVVSWNALVSGYCQRGMFQESVDLFVEMAR 184


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 133/327 (40%), Positives = 208/327 (63%), Gaps = 4/327 (1%)

Query: 11  KVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFES 70
           ++  +  C NV   ++++  Y + G+++E+  VFD M +K++VS +A+L  Y Q G  E 
Sbjct: 307 ELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEE 366

Query: 71  VIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVD 126
            +++F EM    E ++  +F  VL  CA +AAL  G ++H + IR        + +AL+ 
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA 426

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           +Y KCG ++ A   F +M  R++++WN+MI+G+A++G G+EAL IFD M    TKPD ++
Sbjct: 427 MYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDIT 486

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
            +GVL+ACSH GL+++G  +F SM  ++ +  K EHY CM+DLLGRAG L EA  L+++ 
Sbjct: 487 LVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM 546

Query: 247 DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306
               DS++W  LLGA    RN  +    A+KI EL+P+    YVLL N+Y + G+W DA 
Sbjct: 547 PFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDAR 606

Query: 307 KIRTLMKYSGVKKMPGKSWIEANSKLN 333
           K+R +M+  GVKK+PG SWIE  +K++
Sbjct: 607 KMRVMMEERGVKKVPGFSWIEVQNKVH 633



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 14/240 (5%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI 81
           V  + ++  +   GLV  +   FD   +K++VS + +L  Y + G  E    +F    E 
Sbjct: 132 VTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW 191

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D  S+  ++        +   +E+   + R  G +DV+  + +V  YA+ G +  A ++F
Sbjct: 192 DAISWNALMSGYVQWGKMSEAREL---FDRMPG-RDVVSWNIMVSGYARRGDMVEARRLF 247

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
              PVR++ TW +++SG+AQNG  EEA R+FD M E       VS+  +++A     ++D
Sbjct: 248 DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA----VSWNAMVAAYIQRRMMD 303

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
             ++ F  M         +  +N M+    +AG+LEEA+ + +    + D+  W  +L A
Sbjct: 304 EAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 121/264 (45%), Gaps = 18/264 (6%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80
           V+  +  +  + + G V ++ R+F  M ++++ + +A+L GY   G       +FR +  
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
            D +S+  +L A A  ++L   + +  +   R    D +  + ++  +A  G V  A   
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLARHY 153

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F   P ++ ++WN M++ + +NGR EEA  +F+  TE     D +S+  ++S     G +
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DAISWNALMSGYVQWGKM 209

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              R+ F  M         +  +N MV    R G + EA  L + A  R D   W  ++ 
Sbjct: 210 SEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARRLFDAAPVR-DVFTWTAVVS 263

Query: 261 ACTTFRNAHVAERVAKKIMELKPD 284
                +N  + E  A+++ +  P+
Sbjct: 264 GYA--QNGMLEE--ARRVFDAMPE 283



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 127/261 (48%), Gaps = 9/261 (3%)

Query: 2   LKQGKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++ GK   A+ +   + G +VV  + +V  Y + G + E+ R+FD    ++  + +A++ 
Sbjct: 204 VQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVS 263

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           GY Q G  E   R+F  M E +  S+  ++ A      +   KE+         C++V  
Sbjct: 264 GYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL----FNMMPCRNVAS 319

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + ++  YA+ G ++ A  +F  MP ++ ++W +M++ ++Q G  EE L++F +M   G 
Sbjct: 320 WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGE 379

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             +  +F  VLS C+ +  ++ G + H   +   Y +   +   N ++ +  + G +E+A
Sbjct: 380 WVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVG--NALLAMYFKCGNMEDA 437

Query: 240 ETLIENADCRHDSSLWEVLLG 260
               E  + R D   W  ++ 
Sbjct: 438 RNAFEEMEER-DVVSWNTMIA 457



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 23/215 (10%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +VI  +  +  + + G V  A ++F  MP R+  T+N+M++G++ NGR   A  +F  +
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI 95

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                +PD+ S+  +L A +    +   R  F  M     +      YN M+      GL
Sbjct: 96  ----PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHANHGL 146

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH-LSYVLLDN 294
           +  A    + A  + D+  W  +L A    RN  V E  A+ +   + +   +S+  L +
Sbjct: 147 VSLARHYFDLAPEK-DAVSWNGMLAAYV--RNGRVEE--ARGLFNSRTEWDAISWNALMS 201

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
            Y   G+ ++A ++          +MPG+  +  N
Sbjct: 202 GYVQWGKMSEAREL--------FDRMPGRDVVSWN 228



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++H ++I  G      V ++L+ MY KCG ++++   F++M +++ VS + ++ G
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAG 458

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  +  + IF  M     + D  +   VL AC+    +  G           G   
Sbjct: 459 YARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 518

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMI 156
                + ++DL  + G +  AH +   MP     T W +++
Sbjct: 519 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 133/327 (40%), Positives = 208/327 (63%), Gaps = 4/327 (1%)

Query: 11  KVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFES 70
           ++  +  C NV   ++++  Y + G+++E+  VFD M +K++VS +A+L  Y Q G  E 
Sbjct: 307 ELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEE 366

Query: 71  VIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVD 126
            +++F EM    E ++  +F  VL  CA +AAL  G ++H + IR        + +AL+ 
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA 426

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           +Y KCG ++ A   F +M  R++++WN+MI+G+A++G G+EAL IFD M    TKPD ++
Sbjct: 427 MYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDIT 486

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
            +GVL+ACSH GL+++G  +F SM  ++ +  K EHY CM+DLLGRAG L EA  L+++ 
Sbjct: 487 LVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM 546

Query: 247 DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306
               DS++W  LLGA    RN  +    A+KI EL+P+    YVLL N+Y + G+W DA 
Sbjct: 547 PFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDAR 606

Query: 307 KIRTLMKYSGVKKMPGKSWIEANSKLN 333
           K+R +M+  GVKK+PG SWIE  +K++
Sbjct: 607 KMRVMMEERGVKKVPGFSWIEVQNKVH 633



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 14/240 (5%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI 81
           V  + ++  +   GLV  +   FD   +K++VS + +L  Y + G  E    +F    E 
Sbjct: 132 VTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW 191

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D+ S+  ++        +   +E+      R   +DV+  + +V  YA+ G +  A ++F
Sbjct: 192 DVISWNALMSGYVQWGKMSEAREL----FDRMPGRDVVSWNIMVSGYARRGDMVEARRLF 247

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
              PVR++ TW +++SG+AQNG  EEA R+FD M E       VS+  +++A     ++D
Sbjct: 248 DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA----VSWNAMVAAYIQRRMMD 303

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
             ++ F  M         +  +N M+    +AG+LEEA+ + +    + D+  W  +L A
Sbjct: 304 EAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 8/193 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +V+  ++L+  Y + G + E+  +FD+M  ++ VS + ++ GY + GD     R+F    
Sbjct: 192 DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP 251

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
             D+F++  V+   A    L   + V      R    + +  +A+V  Y +   +D A +
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKE 307

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F  MP RN+ +WN+M++G+AQ G  EEA  +FD M +     D VS+  +L+A S  G 
Sbjct: 308 LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ----KDAVSWAAMLAAYSQGGC 363

Query: 200 IDRGRKHFASMTK 212
            +   + F  M +
Sbjct: 364 SEETLQLFIEMGR 376



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 121/264 (45%), Gaps = 18/264 (6%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80
           V+  +  +  + + G V ++ R+F  M ++++ + +A+L GY   G       +FR +  
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
            D +S+  +L A A  ++L   + +  +   R    D +  + ++  +A  G V  A   
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLARHY 153

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F   P ++ ++WN M++ + +NGR EEA  +F+  TE     D +S+  ++S     G +
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DVISWNALMSGYVQWGKM 209

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              R+ F  M         +  +N MV    R G + EA  L + A  R D   W  ++ 
Sbjct: 210 SEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARRLFDAAPVR-DVFTWTAVVS 263

Query: 261 ACTTFRNAHVAERVAKKIMELKPD 284
                +N  + E  A+++ +  P+
Sbjct: 264 GYA--QNGMLEE--ARRVFDAMPE 283



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 23/215 (10%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +VI  +  +  + + G V  A ++F  MP R+  T+N+M++G++ NGR   A  +F  +
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI 95

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                +PD+ S+  +L A +    +   R  F  M     +      YN M+      GL
Sbjct: 96  ----PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHANHGL 146

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH-LSYVLLDN 294
           +  A    + A  + D+  W  +L A    RN  V E  A+ +   + +   +S+  L +
Sbjct: 147 VSLARHYFDLAPEK-DAVSWNGMLAAYV--RNGRVEE--ARGLFNSRTEWDVISWNALMS 201

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
            Y   G+ ++A ++          +MPG+  +  N
Sbjct: 202 GYVQWGKMSEAREL--------FDRMPGRDVVSWN 228



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++H ++I  G      V ++L+ MY KCG ++++   F++M +++ VS + ++ G
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAG 458

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  +  + IF  M     + D  +   VL AC+    +  G           G   
Sbjct: 459 YARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 518

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMI 156
                + ++DL  + G +  AH +   MP     T W +++
Sbjct: 519 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 134/340 (39%), Positives = 216/340 (63%), Gaps = 14/340 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+ Q +E+   +     C NV   ++++  Y + G + ++   FD+M +++S+S +A++ 
Sbjct: 312 RMDQARELFEAMP----CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIA 367

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR---RS 113
           GY Q+G  E  + +F EM    E ++  +F   L  CA +AAL LGK+VH + ++    S
Sbjct: 368 GYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES 427

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
           GC    + +AL+ +Y KCG +D A+ +F  +  + +++WN+MI+G+A++G G+EAL +F+
Sbjct: 428 GC---YVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFE 484

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M + G  PD V+ +GVLSACSH GL+D+G ++F SMT++Y I    +HY CM+DLLGRA
Sbjct: 485 SMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRA 544

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           G L++A+ L++N     D++ W  LLGA     N  + E+ AK I E++PD    YVLL 
Sbjct: 545 GRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLS 604

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           N+Y A GRW D  ++R  M+  GVKK+PG SW+E  +K++
Sbjct: 605 NLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIH 644



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 128/266 (48%), Gaps = 19/266 (7%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y + G V E+  +FD+M  KNS+S + +L  Y Q G  E   R+F    
Sbjct: 141 DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKA 200

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYI-RRSGCKDVIIESALVDLYAKCGCVDFAH 138
           + +L S+      C     ++  + V  + I  R   +D +  + ++  YA+ G +  A 
Sbjct: 201 DWELISWN-----CMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQ 255

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F + PVR++ TW +M+SG+ QNG  +EA R+FD M E     + VS+  +++      
Sbjct: 256 RLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPE----KNSVSWNAIIAGYVQCK 311

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
            +D+ R+ F +M  +      +  +N M+    + G + +A    +    R DS  W  +
Sbjct: 312 RMDQARELFEAMPCQ-----NVSSWNTMITGYAQNGDIAQARNFFDRMPQR-DSISWAAI 365

Query: 259 LGACTTFRNAHVAERVAKKIMELKPD 284
           +     +  +   E      +E+K D
Sbjct: 366 IAG---YAQSGYGEEALHLFVEMKRD 388



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 118/246 (47%), Gaps = 14/246 (5%)

Query: 14  TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIR 73
           +L    ++V  +  +  + + G  D + R+F+ M +++S+S +A++ G      F    +
Sbjct: 42  SLATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQ 101

Query: 74  IFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133
           +F +M   DL S+ +++  C     LR  + +  Q   R    DV+  +A++  YA+ G 
Sbjct: 102 LFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPER----DVVSWNAMLSGYAQNGY 157

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           V  A +IF +MP +N I+WN M++ + QNGR E+A R+F    E     + +S+  ++  
Sbjct: 158 VKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF----ESKADWELISWNCMMGG 213

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
                 +   R  F  M +   +      +N M+    + G L EA+ L E +  R D  
Sbjct: 214 YVKRNRLVDARGIFDRMPERDEVS-----WNTMISGYAQNGELLEAQRLFEESPVR-DVF 267

Query: 254 LWEVLL 259
            W  ++
Sbjct: 268 TWTAMV 273



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 117/263 (44%), Gaps = 64/263 (24%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHR------------------- 42
           +K+ KE+  ++     C N +  + ++  Y + G ++++ R                   
Sbjct: 158 VKEAKEIFDEMP----CKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGG 213

Query: 43  ------------VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSF---- 86
                       +FD+M +++ VS + ++ GY Q G+     R+F E    D+F++    
Sbjct: 214 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 273

Query: 87  -----------------GIVLRACAGLAALRLGKEVHCQYIRRS-------GCKDVIIES 122
                            G+  +      A+  G  V C+ + ++        C++V   +
Sbjct: 274 SGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGY-VQCKRMDQARELFEAMPCQNVSSWN 332

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            ++  YA+ G +  A   F +MP R+ I+W ++I+G+AQ+G GEEAL +F +M   G + 
Sbjct: 333 TMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERL 392

Query: 183 DHVSFIGVLSACSHMGLIDRGRK 205
           +  +F   LS C+ +  ++ G++
Sbjct: 393 NRSTFTSTLSTCAEIAALELGKQ 415



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 14/171 (8%)

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D++  +  +  + + G  D A ++F  MP R+ I+WN+MISG   N +   A ++F+ M 
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKM- 106

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                 D VS+  ++S C     +   R  F  M +       +  +N M+    + G +
Sbjct: 107 ---PTRDLVSWNVMISGCVRYRNLRAARLLFDQMPER-----DVVSWNAMLSGYAQNGYV 158

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287
           +EA+ + +   C++  S W  +L A    +N  + +  A+++ E K D  L
Sbjct: 159 KEAKEIFDEMPCKNSIS-WNGMLAAYV--QNGRIED--ARRLFESKADWEL 204


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 139/330 (42%), Positives = 206/330 (62%), Gaps = 6/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+HA  + +GL  ++ V +SL+DMY KCG +  +  VF+   +K+ VS + L+ G
Sbjct: 330 LGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTS-RKDEVSYNILIIG 388

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +T D    + +F EM    ++ D+ SF  V+ ACA LAAL+ GKEVH   +R      
Sbjct: 389 YSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSH 448

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++L+D Y KCG +D A ++F Q+  +++ +WN+MI G+   G  E A+ +F+ M +
Sbjct: 449 LFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRD 508

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              + D VS+I VLSACSH GL++RG ++F+ M  + R++P   HY CMVDLLGRAG +E
Sbjct: 509 DTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVE 567

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI+      D+++W  LLGAC  + N  +  R A+ + ELKP     Y+LL N+Y 
Sbjct: 568 EAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYA 627

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             GRW++A KIR LMK  G KK PG SW++
Sbjct: 628 ETGRWDEANKIRELMKSRGAKKNPGCSWVQ 657



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 119/208 (57%), Gaps = 5/208 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K GKE+H   + +G   ++ + +SL+DMY K G   E+  +F  + ++N VS +A++  
Sbjct: 229 FKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIAN 288

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y         IR   +M+E     +  +F  VL ACA L  L  GKE+H   +R     D
Sbjct: 289 YALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSD 348

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++L+D+YAKCGC+  A  +F     ++ +++N +I G+++     ++L +F +M  
Sbjct: 349 LFVSNSLIDMYAKCGCLHSARNVF-NTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRL 407

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G KPD VSF+GV+SAC+++  + +G++
Sbjct: 408 LGKKPDVVSFVGVISACANLAALKQGKE 435



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 128/258 (49%), Gaps = 7/258 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + +H   + +GL   V   ++LVD YGKCG V    +VF++ ++KN VS ++++ G    
Sbjct: 132 RRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACK 191

Query: 66  GDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G     +  FR M     + +  +   +L     L   + GKE+H   +R     D+ I 
Sbjct: 192 GRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIA 251

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++L+D+YAK G    A  IF  +  RN+++WN+MI+ +A N    EA+R    M E G  
Sbjct: 252 NSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGEC 311

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+ V+F  VL AC+ +G +  G K   +M     +   +   N ++D+  + G L  A  
Sbjct: 312 PNAVTFTNVLPACARLGFLGPG-KEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARN 370

Query: 242 LIENADCRHDSSLWEVLL 259
           +   +  R D   + +L+
Sbjct: 371 VFNTS--RKDEVSYNILI 386



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 142/303 (46%), Gaps = 9/303 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G EVH  V  LG   +V V ++L+ +YG CG ++++ R+FD+M +++ VS + ++    
Sbjct: 28  KGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLS 87

Query: 64  QTGDFESV-----IRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
             GD+          I R + + +L S   +L   A L    + + +HC  ++      V
Sbjct: 88  VNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQV 147

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
              +ALVD Y KCG V    Q+F +   +N ++WNS+I+G A  GR  +AL  F  M + 
Sbjct: 148 TTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDA 207

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +P+ V+   +L     +     G K     +     +  I   N ++D+  ++G   E
Sbjct: 208 GAQPNSVTISSILPVLVELECFKAG-KEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTE 266

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A T+  N D R+  S W  ++      R    A R   ++ E   +C  + V   NV  A
Sbjct: 267 ASTIFHNLDRRNIVS-WNAMIANYALNRLPLEAIRFVIQMQE-TGECP-NAVTFTNVLPA 323

Query: 299 VGR 301
             R
Sbjct: 324 CAR 326



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           ++D  +F  VL+ C+    +  G EVH    +     DV + + L+ LY  CG ++ A +
Sbjct: 7   QLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARR 66

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT-EGGTKPDHVSFIGVLSACSHMG 198
           +F +MP R++++WN++I   + NG   EA   +  M      KP+ VS I +L   + + 
Sbjct: 67  LFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALE 126

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
             +  R+      K   +  ++   N +VD  G+ G
Sbjct: 127 DEEMTRRIHCYSVK-VGLDSQVTTCNALVDAYGKCG 161


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 211/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++HA +   G+  ++   +SL+ MY K GL++E+   FD++  K+++S  ALL G
Sbjct: 323 LHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSG 382

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E    +F++M+    E D+ +   ++ AC+ LAAL+ GK  H   I R    +
Sbjct: 383 CVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALE 442

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I ++L+D+YAKCG +D + Q+F +MP R++++WN+MI+G+  +G G+EA  +F  M  
Sbjct: 443 TSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKN 502

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V+FI +++ACSH GL+  G+  F +MT +Y I P++EHY CMVDLL R GLL+
Sbjct: 503 QGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLD 562

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I++   + D  +W  LLGAC   +N  + ++V++ I +L P+   ++VLL N++ 
Sbjct: 563 EAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFS 622

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GR+++A ++R + K  G KK PG SWIE N  L+
Sbjct: 623 AAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLH 658



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 134/268 (50%), Gaps = 12/268 (4%)

Query: 2   LKQGKEVHAKVITLGLCGN---VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           L QG  +HA  +   L  N   V++ ++L+DMY KC  +  + RVF  M  +N V+ SAL
Sbjct: 218 LFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSAL 277

Query: 59  LQGYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           + G+           +F++M       +   S    LR CA LA L +G ++H    +  
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSG 337

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D+   ++L+ +YAK G ++ A   F ++ V++ I++ +++SG  QNG+ EEA  +F 
Sbjct: 338 IHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFK 397

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            M     +PD  + + ++ ACSH+  +  G+  H + + +   ++  I   N ++D+  +
Sbjct: 398 KMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI--CNSLIDMYAK 455

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLG 260
            G ++ +  + +    R D   W  ++ 
Sbjct: 456 CGKIDLSRQVFDKMPAR-DVVSWNTMIA 482



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 140/294 (47%), Gaps = 13/294 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +HA     GL  ++ V ++L+D+Y +C     +  VF KM  ++ V+ +A+L G
Sbjct: 116 LRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAG 175

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIR---RS 113
           Y   G +   I    +M++      +  +   +L   A   AL  G  +H   +R     
Sbjct: 176 YANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQ 235

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
             + V+I +AL+D+YAKC  + +A ++F  MPVRN +TW+++I GF    R  EA  +F 
Sbjct: 236 NEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFK 295

Query: 174 DM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
           DM  EG       S    L  C+ +  +  G +  A + K   I   +   N ++ +  +
Sbjct: 296 DMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKS-GIHADLTASNSLLSMYAK 354

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
           AGL+ EA    +    + D+  +  LL  C     A  A  V KK+    ++PD
Sbjct: 355 AGLINEATMFFDEIAVK-DTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPD 407



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 96/174 (55%), Gaps = 5/174 (2%)

Query: 35  GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVL 90
           G +  + +VFD++   ++ + +AL++ Y   G F + I ++R M    +    ++F  VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
           +AC+ L  LR G+ +H          D+ + +AL+DLY +C     A  +F +MP+R+++
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTE-GGTKPDHVSFIGVLSACSHMGLIDRG 203
            WN+M++G+A +G    A+    DM + GG +P+  + + +L   +  G + +G
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG 221


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/361 (39%), Positives = 205/361 (56%), Gaps = 36/361 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +KQGK+VHA  I   +  + VV+SSLVDMY KCGL D    VFD +  KNS+S +A++ G
Sbjct: 121 MKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISG 180

Query: 62  YCQTGDFESVIRIFREM------------------------------------EEIDLFS 85
           Y Q+G     I++F++M                                    + +D F 
Sbjct: 181 YAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFI 240

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              ++ A A LA L LGK++HC  I       + + +ALVD+YAKC  V  A +IF +M 
Sbjct: 241 LSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMV 300

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R++++W S+I G AQ+G  EEAL +++ M   G KP+ V+F+G++ ACSH+GL+ +GR 
Sbjct: 301 QRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRY 360

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F SM K+Y I P ++HY C++DLL R+G LEEAE LI+    + D + W  LL AC   
Sbjct: 361 FFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHH 420

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           RN  +  RVA  ++ LKP+   +Y+LL N+Y +   W    K+R LM    VKK PG S 
Sbjct: 421 RNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSC 480

Query: 326 I 326
           I
Sbjct: 481 I 481



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 106/177 (59%), Gaps = 5/177 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H  +I  G+     + ++L++MYGKCGL+ ++  +F+++  ++ +S +++L    Q
Sbjct: 22  GKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQ 81

Query: 65  TGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                  + +F  M      + D + F  +++ACA L A++ GK+VH  +I      D +
Sbjct: 82  ANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDV 141

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++S+LVD+YAKCG  D    +F  +  +N I+W +MISG+AQ+GR  +A+++F  M 
Sbjct: 142 VKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMP 198



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRS--GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           L+ACA   +  +GK++HC  I+     CK   + + L+++Y KCG +  A  +F Q+P R
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKS--LSNNLINMYGKCGLIQDALNLFNQLPHR 67

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           + I+W S+++   Q       L +F  M  + G +PDH  F  ++ AC+ +G + +G++ 
Sbjct: 68  DPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQV 127

Query: 207 FASMTKEYRIKPKIEH---YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
            A+    + + P  +     + +VD+  + GL +    + ++   ++  S   ++ G   
Sbjct: 128 HAT----FIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQ 183

Query: 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
           + R     +   K  M +K    LS+  L +     G W D+F +   M+  G+
Sbjct: 184 SGRKLDAIQLFQK--MPVKN--LLSWTALISGLVQSGNWVDSFYLFMEMRSKGI 233


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/330 (40%), Positives = 208/330 (63%), Gaps = 6/330 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +H  +I  GL  +V V S+L+D++ K G  +++  VFD+M+  +++  ++++ G+ Q   
Sbjct: 133 LHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 192

Query: 68  FESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            +  + +F+ M+         +   VLRAC GLA L LG + H   ++    +D+I+ +A
Sbjct: 193 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNA 250

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           LVD+Y KCG ++ A ++F QM  R++ITW++MISG AQNG  +EAL++F+ M   GTKP+
Sbjct: 251 LVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPN 310

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
           +++ +GVL ACSH GL++ G  +F SM K Y I P  EHY CM+DLLG+AG L++A  L+
Sbjct: 311 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLL 370

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
              +C  D+  W  LLGAC   RN  +AE  AKK++ L P+   +Y +L N+Y    +W+
Sbjct: 371 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWD 430

Query: 304 DAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              +IR  M+  G+KK PG SWIE N +++
Sbjct: 431 SVEEIRKRMRDIGIKKEPGCSWIEVNKQIH 460



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 136/259 (52%), Gaps = 15/259 (5%)

Query: 27  LVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ----TGDFESVIRIFREMEEID 82
           L++MY K  L++++H++FD+M ++N +S + ++  Y +        E ++ + R+    +
Sbjct: 54  LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPN 113

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
           ++++  VLRAC G++ +R+   +HC  I+     DV + SAL+D++AK G  + A  +F 
Sbjct: 114 VYTYSSVLRACNGMSDVRM---LHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFD 170

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           +M   + I WNS+I GFAQN R + AL +F  M   G   +  +   VL AC+ + L++ 
Sbjct: 171 EMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 230

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           G +    + K       +   N +VD+  + G LE+A  +      R D   W  ++   
Sbjct: 231 GMQAHVHIVK---YDQDLILNNALVDMYCKCGSLEDARRVFNQMKER-DVITWSTMISGL 286

Query: 263 TTFRNAHVAERVAKKIMEL 281
              +N +  E  A K+ EL
Sbjct: 287 A--QNGYSQE--ALKLFEL 301



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 104/198 (52%), Gaps = 7/198 (3%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQI 140
           D  ++  +++ C    A+  G  + C+++  +G + ++ + + L+++Y K   ++ AHQ+
Sbjct: 12  DSATYSELIKCCLSHRAVHEGNLI-CRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQL 70

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F QMP RN+I+W +MIS +++    ++AL +   M   G +P+  ++  VL AC+ M  +
Sbjct: 71  FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDV 130

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              R     + KE  ++  +   + ++D+  + G  E+A ++ +      D+ +W  ++G
Sbjct: 131 ---RMLHCGIIKE-GLESDVYVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIG 185

Query: 261 ACTTFRNAHVAERVAKKI 278
                  + VA  + K++
Sbjct: 186 GFAQNSRSDVALELFKRM 203


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 142/336 (42%), Positives = 211/336 (62%), Gaps = 6/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GKE+HA+ I  G   ++ V ++L DMY KCG ++ + RVF K+  ++ VS + L+ G
Sbjct: 327 LRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIG 385

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y QT +    +R+F EM     ++D+ S+  V+ ACA LAAL+ GKEVH   +R+     
Sbjct: 386 YSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTH 445

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I +AL+D Y KCG +D A ++F Q+P R+  +WNSMI G+   G    A+ +F+ M E
Sbjct: 446 LFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKE 505

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + D VS+I VLSACSH GL++ G+K+F  M  +  IKP   HY CMVDLLGRAGL+E
Sbjct: 506 DGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQ-NIKPTQMHYACMVDLLGRAGLIE 564

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LIE+     D+++W  LLGAC       +A   A+ + +LKP     Y +L N+Y 
Sbjct: 565 EAVKLIESLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQHSGYYSVLSNMYA 624

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W++A ++R LMK  G KK PG SW++ +++++
Sbjct: 625 EAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDNQVH 660



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 132/238 (55%), Gaps = 6/238 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+E+H  V  LG   +V V ++L+  YG CG + +  RVFD+ML+++ VS ++++  
Sbjct: 23  VQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEMLERDVVSWNSVIGV 82

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           +   G +   I +F EM        ++ S   VL  CAGL     G+++HC  ++     
Sbjct: 83  FSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDS 142

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V + +ALVD+Y KCG V  + ++F ++  RN ++WN++I+  A   R ++AL +F  M 
Sbjct: 143 QVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMI 202

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           +GG KP+ V+F  +L     + L D G K     +  + ++  I   N ++D+  ++G
Sbjct: 203 DGGVKPNSVTFSSMLPVLVELKLFDFG-KEIHGFSLRFGLESDIFVANALIDMYAKSG 259



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 130/246 (52%), Gaps = 9/246 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H  V+  GL   V V ++LVD+YGKCG V +S RVFD++ ++N VS +A++     
Sbjct: 128 GRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAY 187

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               +  + +FR M +     +  +F  +L     L     GKE+H   +R     D+ +
Sbjct: 188 LERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFV 247

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+YAK G    A  +F Q+  +N+++WN+M++ FAQN     A+ +   M   G 
Sbjct: 248 ANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGE 307

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEE 238
            P+ V+F  VL AC+ +G +  G++  A   +  R    ++ +  N + D+  + G L  
Sbjct: 308 IPNSVTFTNVLPACARIGFLRPGKEIHA---RAIRTGSSVDLFVSNALTDMYAKCGCLNL 364

Query: 239 AETLIE 244
           A  + +
Sbjct: 365 ARRVFK 370



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 95/180 (52%), Gaps = 3/180 (1%)

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
           +D  +F  VL+ACA   +++ G+E+H    +     DV + + L+  Y  CG +    ++
Sbjct: 5   LDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRV 64

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT-EGGTKPDHVSFIGVLSACSHMGL 199
           F +M  R++++WNS+I  F+ +G   EA+ +F +M    G +P+ VS + VL  C+ +  
Sbjct: 65  FDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLED 124

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
              GR+    + K   +  ++   N +VD+ G+ G ++++  + +    R+  S W  ++
Sbjct: 125 GVTGRQIHCYVVKT-GLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVS-WNAII 182


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 211/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++HA +   G+  ++   +SL+ MY K GL++E+   FD++  K+++S  ALL G
Sbjct: 323 LHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSG 382

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E    +F++M+    E D+ +   ++ AC+ LAAL+ GK  H   I R    +
Sbjct: 383 CVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALE 442

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I ++L+D+YAKCG +D + Q+F +MP R++++WN+MI+G+  +G G+EA  +F  M  
Sbjct: 443 TSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKN 502

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V+FI +++ACSH GL+  G+  F +MT +Y I P++EHY CMVDLL R GLL+
Sbjct: 503 QGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLD 562

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I++   + D  +W  LLGAC   +N  + ++V++ I +L P+   ++VLL N++ 
Sbjct: 563 EAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFS 622

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GR+++A ++R + K  G KK PG SWIE N  L+
Sbjct: 623 AAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLH 658



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 137/269 (50%), Gaps = 14/269 (5%)

Query: 2   LKQGKEVHAKVITLGLCGN---VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           L QG  +HA  +   L  N   V++ ++L+DMY KC  +  + RVF  M  +N V+ SAL
Sbjct: 218 LFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSAL 277

Query: 59  LQGYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           + G+           +F++M       +   S    LR CA LA L +G ++H   I +S
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHA-LIAKS 336

Query: 114 GC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           G   D+   ++L+ +YAK G ++ A   F ++ V++ I++ +++SG  QNG+ EEA  +F
Sbjct: 337 GIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVF 396

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLG 231
             M     +PD  + + ++ ACSH+  +  G+  H + + +   ++  I   N ++D+  
Sbjct: 397 KKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI--CNSLIDMYA 454

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLG 260
           + G ++ +  + +    R D   W  ++ 
Sbjct: 455 KCGKIDLSRQVFDKMPAR-DVVSWNTMIA 482



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 140/294 (47%), Gaps = 13/294 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +HA     GL  ++ V ++L+D+Y +C     +  VF KM  ++ V+ +A+L G
Sbjct: 116 LRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAG 175

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIR---RS 113
           Y   G +   I    +M++      +  +   +L   A   AL  G  +H   +R     
Sbjct: 176 YANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQ 235

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
             + V+I +AL+D+YAKC  + +A ++F  MPVRN +TW+++I GF    R  EA  +F 
Sbjct: 236 NEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFK 295

Query: 174 DM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
           DM  EG       S    L  C+ +  +  G +  A + K   I   +   N ++ +  +
Sbjct: 296 DMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKS-GIHADLTASNSLLSMYAK 354

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
           AGL+ EA    +    + D+  +  LL  C     A  A  V KK+    ++PD
Sbjct: 355 AGLINEATMFFDEIAVK-DTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPD 407



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 96/174 (55%), Gaps = 5/174 (2%)

Query: 35  GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVL 90
           G +  + +VFD++   ++ + +AL++ Y   G F + I ++R M    +    ++F  VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
           +AC+ L  LR G+ +H          D+ + +AL+DLY +C     A  +F +MP+R+++
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTE-GGTKPDHVSFIGVLSACSHMGLIDRG 203
            WN+M++G+A +G    A+    DM + GG +P+  + + +L   +  G + +G
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG 221


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 201/336 (59%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
              G EVH ++I  G+   + V S+LVDMY KCG+++E+ ++  ++ ++  VS +A++ G
Sbjct: 476 FSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISG 535

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +      E   R F  M E+    D F++  VL  CA LA + LGK++H Q I+     D
Sbjct: 536 FSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSD 595

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I S LVD+Y+KCG +  +  +F + P R+ +TWN+MI GFA +G GEEAL +F+ M  
Sbjct: 596 VYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLH 655

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP+H +F+ VL ACSH+G   +G  +F  M   Y ++P++EHY+CMVD+LGR+G +E
Sbjct: 656 ENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVE 715

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI++     D+ +W  LL  C    N  VAE+ A  +++L P+   +Y LL N+Y 
Sbjct: 716 EALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYA 775

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G W    KIR  M+   +KK PG SWIE   +++
Sbjct: 776 DAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVH 811



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 144/262 (54%), Gaps = 6/262 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H   + +G   +VV  S+LVDMY KC  +++S  VF ++  KN +S SA + G  Q
Sbjct: 176 GIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQ 235

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                  +++F+EM+     +   ++  V R+CAGL+A RLG ++HC  ++     DVI+
Sbjct: 236 NDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIV 295

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A +D+YAKC  +  A+++F  +P  NL ++N+MI G+A+N +G +A ++F  + +   
Sbjct: 296 GTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSF 355

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D VS  G LSA + +     G +    +  +  +   I   N ++D+ G+ G L EA 
Sbjct: 356 SFDEVSLSGALSAAAVIKGHSEGLQ-LHGLAIKSNLSSNICVANAILDMYGKCGALVEAS 414

Query: 241 TLIENADCRHDSSLWEVLLGAC 262
            L +  + R D   W  ++ AC
Sbjct: 415 GLFDEMEIR-DPVSWNAIITAC 435



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 145/261 (55%), Gaps = 8/261 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G ++H   I   L  N+ V ++++DMYGKCG + E+  +FD+M  ++ VS +A++   C
Sbjct: 377 EGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITA-C 435

Query: 64  QTGDFESVI-----RIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           +  + E         + R   E D F++G VL+ACAG  A   G EVH + I+      +
Sbjct: 436 EQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKM 495

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + SALVD+Y+KCG ++ A +I  ++  + +++WN++ISGF+   + E++ R F  M E 
Sbjct: 496 FVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEM 555

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD+ ++  VL  C+++  +  G++  A M K   +   +   + +VD+  + G + +
Sbjct: 556 GVEPDNFTYATVLDTCANLATVGLGKQIHAQMIK-LELLSDVYITSTLVDMYSKCGNMHD 614

Query: 239 AETLIENADCRHDSSLWEVLL 259
           +  +   A  R DS  W  ++
Sbjct: 615 SLLMFRKAPKR-DSVTWNAMI 634



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 113/230 (49%), Gaps = 36/230 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN---------- 51
           LK GKE HA +I  G    V V + L+ MY KC  ++ +++VF++M +++          
Sbjct: 40  LKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFG 99

Query: 52  ----------------------SVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFS 85
                                  VS ++L+ GY Q GD +  I +F +M ++    D  +
Sbjct: 100 CAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTT 159

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             + L+ C+ L    LG ++H   ++     DV+  SALVD+YAKC  ++ +  +F ++P
Sbjct: 160 LAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELP 219

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            +N I+W++ I+G  QN +    L++F +M   G      ++  V  +C+
Sbjct: 220 DKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCA 269



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 146/297 (49%), Gaps = 10/297 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H   +      +V+V ++ +DMY KC  + +++++F  +   N  S +A++ GY +
Sbjct: 277 GTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYAR 336

Query: 65  TGDFESVIRIFREMEEIDLFSFGIV-----LRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                   ++F ++++ + FSF  V     L A A +     G ++H   I+ +   ++ 
Sbjct: 337 NEQGFQAFKLFLQLQK-NSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNIC 395

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +A++D+Y KCG +  A  +F +M +R+ ++WN++I+   QN    + L  F  M    
Sbjct: 396 VANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSK 455

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +PD  ++  VL AC+       G +    + K   +  K+   + +VD+  + G++EEA
Sbjct: 456 MEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKS-GMGLKMFVGSALVDMYSKCGMMEEA 514

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPDCHLSYVLLDN 294
           E +    + +   S W  ++   +  + +  ++R    ++E+  +PD      +LD 
Sbjct: 515 EKIHYRLEEQTMVS-WNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDT 570



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 3/126 (2%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +F  + + C+   AL+ GKE H   I       V + + L+ +Y KC  +++A+++F +M
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P R++++WN+M+ G A  GR E A  +F+ M   G   D VS+  ++S     G I +  
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHG---DVVSWNSLISGYLQNGDIQKSI 142

Query: 205 KHFASM 210
             F  M
Sbjct: 143 AVFLKM 148


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 133/320 (41%), Positives = 205/320 (64%), Gaps = 4/320 (1%)

Query: 18  CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFRE 77
           C NV   ++++  Y + G+++E+  VFD M +K++VS +A+L  Y Q G  E  +++F E
Sbjct: 189 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 248

Query: 78  M----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133
           M    E ++  +F  VL  CA +AAL  G ++H + IR        + +AL+ +Y KCG 
Sbjct: 249 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 308

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           ++ A   F +M  R++++WN+MI+G+A++G G+EAL IFD M    TKPD ++ +GVL+A
Sbjct: 309 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAA 368

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           CSH GL+++G  +F SM  ++ +  K EHY CM+DLLGRAG L EA  L+++     DS+
Sbjct: 369 CSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDST 428

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           +W  LLGA    RN  +    A+KI EL+P+    YVLL N+Y + G+W DA K+R +M+
Sbjct: 429 MWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMME 488

Query: 314 YSGVKKMPGKSWIEANSKLN 333
             GVKK+PG SWIE  +K++
Sbjct: 489 ERGVKKVPGFSWIEVQNKVH 508



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 14/240 (5%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI 81
           V  + ++  +   GLV  +   FD   +K++VS + +L  Y + G  E    +F    E 
Sbjct: 7   VTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW 66

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D+ S+  ++        +   +E+   + R  G +DV+  + +V  YA+ G +  A ++F
Sbjct: 67  DVISWNALMSGYVQWGKMSEAREL---FDRMPG-RDVVSWNIMVSGYARRGDMVEARRLF 122

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
              PVR++ TW +++SG+AQNG  EEA R+FD M E     + VS+  +++A     ++D
Sbjct: 123 DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE----RNAVSWNAMVAAYIQRRMMD 178

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
             ++ F  M         +  +N M+    +AG+LEEA+ + +    + D+  W  +L A
Sbjct: 179 EAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 232



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 8/193 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +V+  ++L+  Y + G + E+  +FD+M  ++ VS + ++ GY + GD     R+F    
Sbjct: 67  DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP 126

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
             D+F++  V+   A    L   + V      R    + +  +A+V  Y +   +D A +
Sbjct: 127 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKE 182

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F  MP RN+ +WN+M++G+AQ G  EEA  +FD M +     D VS+  +L+A S  G 
Sbjct: 183 LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ----KDAVSWAAMLAAYSQGGC 238

Query: 200 IDRGRKHFASMTK 212
            +   + F  M +
Sbjct: 239 SEETLQLFIEMGR 251



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 14/169 (8%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +D +  + ++  +A  G V  A   F   P ++ ++WN M++ + +NGR EEA  +F+  
Sbjct: 4   RDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 63

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           TE     D +S+  ++S     G +   R+ F  M         +  +N MV    R G 
Sbjct: 64  TEW----DVISWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGD 114

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
           + EA  L + A  R D   W  ++      +N  + E  A+++ +  P+
Sbjct: 115 MVEARRLFDAAPVR-DVFTWTAVVSGYA--QNGMLEE--ARRVFDAMPE 158



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++H ++I  G      V ++L+ MY KCG ++++   F++M +++ VS + ++ G
Sbjct: 274 LECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAG 333

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  +  + IF  M     + D  +   VL AC+    +  G           G   
Sbjct: 334 YARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTA 393

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMI 156
                + ++DL  + G +  AH +   MP     T W +++
Sbjct: 394 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 434



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 10/116 (8%)

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MPVR+ +T+N MIS  A +G    A   FD   E     D VS+ G+L+A    G ++  
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPE----KDAVSWNGMLAAYVRNGRVEEA 56

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           R  F S     R +  +  +N ++    + G + EA  L +    R D   W +++
Sbjct: 57  RGLFNS-----RTEWDVISWNALMSGYVQWGKMSEARELFDRMPGR-DVVSWNIMV 106


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G EVH +VI  G+  +  V S+++DMY KCG++ E+ ++ +++ ++ +VS ++++ G
Sbjct: 489 LNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISG 548

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +      E+ +  F  M ++    D F++  VL  CA LA + LGK++H Q ++     D
Sbjct: 549 FSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSD 608

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I S +VD+Y+KCG +  +  +F + P R+ +TW++MI  +A +G GE+A+++F++M  
Sbjct: 609 VYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQL 668

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP+H  FI VL AC+HMG +D+G  +F  M   Y + P++EHY+CMVDLLGR+G + 
Sbjct: 669 QNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVN 728

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LIE+     D  +W  LLG C    N  VAE+ A  +++L P    +YVLL NVY 
Sbjct: 729 EALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYA 788

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G W +  KIR+ MK   +KK PG SWI+   +++
Sbjct: 789 IAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVH 824



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 146/262 (55%), Gaps = 6/262 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G ++H   +  GL  N+ V ++++DMY KCG + E+  +FD M  K++VS +A++  + 
Sbjct: 390 EGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHE 449

Query: 64  QTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q    E  + +F    R   E D ++FG V++ACAG  AL  G EVH + I+     D  
Sbjct: 450 QNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWF 509

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + SA++D+Y KCG +  A +I  ++  R  ++WNS+ISGF+   +GE AL  F  M + G
Sbjct: 510 VGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVG 569

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PD+ ++  VL  C+++  ++ G++    + K  ++   +   + +VD+  + G ++++
Sbjct: 570 VIPDNFTYATVLDICANLATVELGKQIHGQILK-LQLHSDVYIASTIVDMYSKCGNMQDS 628

Query: 240 ETLIENADCRHDSSLWEVLLGA 261
             + E A  R D   W  ++ A
Sbjct: 629 RIMFEKAPKR-DYVTWSAMICA 649



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 146/276 (52%), Gaps = 10/276 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH   I +G   +VV  ++LVDMY  C  +D +  +F +M ++NSV  SA++ GY +
Sbjct: 189 GLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVR 248

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              F   +++++ M +    +   +F    R+CAGL+A  LG ++H   ++ +   D I+
Sbjct: 249 NDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIV 308

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A +D+YAKC  +  A ++F   P     + N++I G+A+  +  EAL IF  + +   
Sbjct: 309 GTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYL 368

Query: 181 KPDHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             D +S  G L+ACS + G ++  + H   +  +  +   I   N ++D+  + G L EA
Sbjct: 369 DFDEISLSGALTACSAIKGYLEGIQLH--GLAVKCGLDFNICVANTILDMYAKCGALMEA 426

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA 275
             + ++ + + D+  W  ++ A    +N HV E +A
Sbjct: 427 CLIFDDMEIK-DAVSWNAIIAAHE--QNEHVEETLA 459



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 35/246 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +  GK+ HA++   G    V V + L+  Y KC  ++ +  VFDKM +++ +S + ++ G
Sbjct: 54  INPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFG 113

Query: 62  YCQTGDFESVIRIFREMEEIDLFS-----------------------------------F 86
           Y   G+ E    +F  M E D+ S                                   F
Sbjct: 114 YAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATF 173

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            +VL+AC G+    LG +VHC  I+     DV+  +ALVD+Y+ C  +D A  IF +MP 
Sbjct: 174 AVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPE 233

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN + W+++I+G+ +N R  E L+++  M + G      +F     +C+ +   + G + 
Sbjct: 234 RNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQL 293

Query: 207 FASMTK 212
            A   K
Sbjct: 294 HAYALK 299



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 142/300 (47%), Gaps = 18/300 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++HA  +      + +V ++ +DMY KC  + ++ +VF+        S +AL+ GY +
Sbjct: 290 GTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYAR 349

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                  + IFR ++    + D  S    L AC+ +     G ++H   ++     ++ +
Sbjct: 350 QDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICV 409

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + ++D+YAKCG +  A  IF  M +++ ++WN++I+   QN   EE L +F  M     
Sbjct: 410 ANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTM 469

Query: 181 KPDHVSFIGVLSACS-----HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           +PD  +F  V+ AC+     + G+   GR   + M  ++ +   I      +D+  + G+
Sbjct: 470 EPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAI------IDMYCKCGM 523

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK--PDCHLSYVLLD 293
           L EAE + E  + R   S W  ++   ++ +    A     +++++   PD      +LD
Sbjct: 524 LVEAEKIHERLEERTTVS-WNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLD 582



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 4/135 (2%)

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
            +M      +F  + + C+ L A+  GK+ H Q         V + + L+  Y KC  ++
Sbjct: 31  NQMNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLN 90

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           +A  +F +MP R++I+WN+MI G+A  G  E A  +FD M E     D VS+  +LS   
Sbjct: 91  YAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPE----RDVVSWNSMLSCYL 146

Query: 196 HMGLIDRGRKHFASM 210
             G   +  + F  M
Sbjct: 147 QNGFHRKSIEIFTKM 161


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/329 (40%), Positives = 200/329 (60%), Gaps = 7/329 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA+ I       ++V +SLVDMY KCG  +E+  +F  +  +++V  +A++  Y Q
Sbjct: 330 GRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQ 389

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G +E  +++F +M +     D  +F  +LRA A +A+L LGK++H   I+     +V  
Sbjct: 390 KGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFS 449

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SAL+D+YAKCG +  A Q F +MP RN+++WN+MIS +AQNG  E  L+ F +M   G 
Sbjct: 450 GSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGL 509

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD VSF+GVLSACSH GL++ G  HF SMT+ Y++ P+ EHY  +VD+L R+G   EAE
Sbjct: 510 QPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAE 569

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPDCHLSYVLLDNVYRA 298
            L+       D  +W  +L AC   +N  +A R A ++  ME   D    YV + N+Y A
Sbjct: 570 KLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDA-APYVNMSNIYAA 628

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            G+W +  K+   M+  GVKK+P  SW+E
Sbjct: 629 AGQWENVSKVHKAMRDRGVKKLPAYSWVE 657



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 142/286 (49%), Gaps = 8/286 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+ VI      NV V ++L+D Y K   V ++ ++FD+M +++ VS + ++ GY  
Sbjct: 229 GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAW 288

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +    +FRE++        F F  +L   +      +G+++H Q I  +   ++++
Sbjct: 289 DGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILV 348

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++LVD+YAKCG  + A  IF  +  R+ + W +MIS + Q G  EE L++F+ M +   
Sbjct: 349 GNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASV 408

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D  +F  +L A + +  +  G K   S   +      +   + ++D+  + G +++A 
Sbjct: 409 IADQATFASLLRASASIASLSLG-KQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAV 467

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
              +    R+  S W  ++ A      A    +  K+++   L+PD
Sbjct: 468 QTFQEMPDRNIVS-WNAMISAYAQNGEAEATLKSFKEMVLSGLQPD 512



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 133/269 (49%), Gaps = 11/269 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCG---LVDESHRVFDKMLK----KNSV 53
           +L Q KE     + +  CG      + V +   C    + ++  +V  +++K       +
Sbjct: 121 QLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLI 180

Query: 54  SSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
             + L+  YC++   +   ++F+EM EID F+F  VL A  GL  + LG+++H   I+ +
Sbjct: 181 VGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTN 240

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              +V + +AL+D Y+K   V  A ++F +MP ++ +++N +ISG+A +G+ + A  +F 
Sbjct: 241 FVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFR 300

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           ++           F  +LS  S+    + GR+  A  T       +I   N +VD+  + 
Sbjct: 301 ELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQ-TIVTTADSEILVGNSLVDMYAKC 359

Query: 234 GLLEEAETLIENADCRHDSSL-WEVLLGA 261
           G  EEAE +  N    H S++ W  ++ A
Sbjct: 360 GKFEEAEMIFTN--LTHRSAVPWTAMISA 386



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 119/267 (44%), Gaps = 41/267 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H+ +I  G   NV   S+L+D+Y KCG + ++ + F +M  +N VS +A++  
Sbjct: 428 LSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISA 487

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACA-------GLAALRLGKEVHCQYI 110
           Y Q G+ E+ ++ F+EM     + D  SF  VL AC+       GL       +++    
Sbjct: 488 YAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDP 547

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEAL 169
           RR     V      VD+  + G  + A ++  +MP+  + I W+S+++    +   E A 
Sbjct: 548 RREHYASV------VDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELAR 601

Query: 170 RIFD---DMTEGGTKPDHVSFIGVLSACS--------HMGLIDRGRKHFAS--------- 209
           R  D   +M E      +V+   + +A          H  + DRG K   +         
Sbjct: 602 RAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHE 661

Query: 210 ---MTKEYRIKPKIEHYNCMVDLLGRA 233
               +   R  P+IE     +D+L + 
Sbjct: 662 THMFSANDRCHPQIEEIRKKIDMLTKT 688



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%)

Query: 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
           Q   +   K+ +  + ++  Y K G +  A ++F  M  R  +TW  +I G++Q  + +E
Sbjct: 68  QLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKE 127

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           A  +F  M   GT+PD+V+F+ +LS C+
Sbjct: 128 AFELFVQMQRCGTEPDYVTFVTLLSGCN 155


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 136/332 (40%), Positives = 196/332 (59%), Gaps = 4/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GKE+H  ++  GL     V SS+  MY K G +D +++ F +M  K+SV  + ++  
Sbjct: 496 LKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVS 555

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  E  I +FR+M     + D  S    L ACA   AL  GKE+HC  +R S   D
Sbjct: 556 FSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISD 615

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + S L+D+Y+KCG +  A  +F  M  +N ++WNS+I+ +  +GR  E L +F +M E
Sbjct: 616 TFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVE 675

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PDHV+F+ ++SAC H GL+D G  +F  MT+EY I  ++EH+ CMVDL GRAG L 
Sbjct: 676 AGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLH 735

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I++     D+  W  LLGAC    N  +A+  +K ++EL P+    YVLL NV+ 
Sbjct: 736 EAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHA 795

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
             G W    K+R+LMK  GV+K+PG SWI+ N
Sbjct: 796 GAGEWESVLKVRSLMKEKGVQKIPGYSWIDVN 827



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 148/265 (55%), Gaps = 8/265 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK  KEVH+ ++  G+  +V ++S+LVD+Y K G V+ + + F +    +    +A++ G
Sbjct: 395 LKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISG 454

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     + +FR + +     +  +   VL ACA LA+L+LGKE+HC  +++ G ++
Sbjct: 455 YVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKK-GLEN 513

Query: 118 VI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           V  + S++  +YAK G +D A+Q F +MPV++ + WN MI  F+QNG+ E A+ +F  M 
Sbjct: 514 VCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMG 573

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             GTK D VS    LSAC++   +  G++    + +   I       + ++D+  + G L
Sbjct: 574 TSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVA-STLIDMYSKCGKL 632

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
             A ++ +  D +++ S W  ++ A
Sbjct: 633 ALARSVFDMMDWKNEVS-WNSIIAA 656



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 140/279 (50%), Gaps = 12/279 (4%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +Q +++HAKV+  G+ G++ + S ++ MY  C    +   +F ++    S+  + L++G+
Sbjct: 93  QQVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGF 152

Query: 63  CQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-D 117
              G F+  +  F  M       D ++F  V++AC GL  + L K VH +  R  G   D
Sbjct: 153 SMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVH-ELARSMGFHMD 211

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I S+L+ LY   G +  A  +F ++PVR+ I WN M++G+ +NG    AL  F +M  
Sbjct: 212 LFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRN 271

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRG-RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              KP+ VSF+ +LS C+  G++  G + H   +   +   P +   N ++ +  + G L
Sbjct: 272 SCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVA--NTIITMYSKCGNL 329

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA 275
            +A  + +    + D+  W  L+      +N    E VA
Sbjct: 330 FDARKIFDIMP-QTDTVTWNGLIAGYV--QNGFTDEAVA 365



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 128/253 (50%), Gaps = 11/253 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K VH    ++G   ++ + SSL+ +Y   G + ++  +FD++  ++ +  + +L GY + 
Sbjct: 197 KMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKN 256

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           GDF S +  F+EM     + +  SF  +L  CA    +R G ++H   IR     D  + 
Sbjct: 257 GDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVA 316

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + ++ +Y+KCG +  A +IF  MP  + +TWN +I+G+ QNG  +EA+ +F  M   G K
Sbjct: 317 NTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVK 376

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA-- 239
            D ++F   L +    G + +  K   S    + +   +   + +VD+  + G +E A  
Sbjct: 377 LDSITFASFLPSVLKSGSL-KYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACK 435

Query: 240 ----ETLIENADC 248
                TL++ A C
Sbjct: 436 TFQQNTLVDVAVC 448



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 114/208 (54%), Gaps = 4/208 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G ++H  VI  G   +  V ++++ MY KCG + ++ ++FD M + ++V+ + L+ G
Sbjct: 294 VRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAG 353

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  + +F+ M     ++D  +F   L +     +L+  KEVH   +R     D
Sbjct: 354 YVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFD 413

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V ++SALVD+Y K G V+ A + F Q  + ++    +MISG+  NG   EAL +F  + +
Sbjct: 414 VYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQ 473

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G  P+ ++   VL AC+ +  +  G++
Sbjct: 474 EGMVPNCLTMASVLPACAALASLKLGKE 501


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/324 (40%), Positives = 210/324 (64%), Gaps = 7/324 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  V + +   GL  N+ + ++L+DMY KCG +D++  +F+ + +K+ +S + ++ G
Sbjct: 280 LELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGG 339

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRS--GC 115
           Y     ++  + +FR+M++ ++     +F  +L ACA L AL LGK +H  YI +   G 
Sbjct: 340 YSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHA-YIDKKFLGL 398

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +  + ++L+D+YAKCG ++ A Q+F  M  ++L +WN+MISG A +G    AL +F  M
Sbjct: 399 TNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQM 458

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G +PD ++F+GVLSACSH GL++ GR+ F+SM ++Y I PK++HY CM+DLLGRAGL
Sbjct: 459 RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGL 518

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            +EAE L++N + + D ++W  LLGAC    N  + E  AK + EL+P+   +YVLL N+
Sbjct: 519 FDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNI 578

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKK 319
           Y   GRW+D  +IRT +   G+KK
Sbjct: 579 YATAGRWDDVARIRTKLNDKGMKK 602



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 165/320 (51%), Gaps = 40/320 (12%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKC---------------------------- 34
           ++GK++H  V+ LGL  +  V +SL++MY +                             
Sbjct: 149 QEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGY 208

Query: 35  ---GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF----SFG 87
              G +D++ R+F+++  +++VS +A++ GY Q+G FE  +  F+EM+  ++     +  
Sbjct: 209 TLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMV 268

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            VL ACA   +L LG  V   +I   G   ++ + +AL+D+Y+KCG +D A  +F  +  
Sbjct: 269 TVLSACAQSGSLELGNWVR-SWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICE 327

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +++I+WN MI G++     +EAL +F  M +   +P+ V+F+ +L AC+++G +D G+  
Sbjct: 328 KDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWI 387

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
            A + K++        +  ++D+  + G +E A+ +      +   S W  ++       
Sbjct: 388 HAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-WNAMISGLAMHG 446

Query: 267 NAHVAERVAKKIME--LKPD 284
           +A++A  + +++ +   +PD
Sbjct: 447 HANMALELFRQMRDEGFEPD 466



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 154/319 (48%), Gaps = 53/319 (16%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDM-----YGKCG---LVDES-----HRVFDKMLKKNS 52
           K++H+++I  GL       S L++      +G      L+ ES       +++ M++ NS
Sbjct: 49  KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNS 108

Query: 53  VSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           +SSS +       G  +  +R+     E + ++F  +L++CA + A + GK++H   ++ 
Sbjct: 109 LSSSPV-------GAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKL 161

Query: 113 SGCKDVIIESALVDLYAKCG-------------------------------CVDFAHQIF 141
               D  + ++L+++YA+ G                               C+D A ++F
Sbjct: 162 GLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLF 221

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
            ++PVR+ ++WN+MI+G+AQ+GR EEAL  F +M      P+  + + VLSAC+  G ++
Sbjct: 222 EEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLE 281

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            G     S  +++ +   +   N ++D+  + G L++A  L E   C  D   W V++G 
Sbjct: 282 LG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI-CEKDIISWNVMIGG 339

Query: 262 CTTFRNAHVAERVAKKIME 280
            +   +   A  + +K+ +
Sbjct: 340 YSHMNSYKEALALFRKMQQ 358


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/329 (40%), Positives = 200/329 (60%), Gaps = 7/329 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA+ I       ++V +SLVDMY KCG  +E+  +F  +  +++V  +A++  Y Q
Sbjct: 370 GRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQ 429

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G +E  +++F +M +     D  +F  +LRA A +A+L LGK++H   I+     +V  
Sbjct: 430 KGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFS 489

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SAL+D+YAKCG +  A Q F +MP RN+++WN+MIS +AQNG  E  L+ F +M   G 
Sbjct: 490 GSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGL 549

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD VSF+GVLSACSH GL++ G  HF SMT+ Y++ P+ EHY  +VD+L R+G   EAE
Sbjct: 550 QPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAE 609

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPDCHLSYVLLDNVYRA 298
            L+       D  +W  +L AC   +N  +A R A ++  ME   D    YV + N+Y A
Sbjct: 610 KLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDA-APYVNMSNIYAA 668

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            G+W +  K+   M+  GVKK+P  SW+E
Sbjct: 669 AGQWENVSKVHKAMRDRGVKKLPAYSWVE 697



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 142/286 (49%), Gaps = 8/286 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+ VI      NV V ++L+D Y K   V ++ ++FD+M +++ VS + ++ GY  
Sbjct: 269 GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAW 328

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +    +FRE++        F F  +L   +      +G+++H Q I  +   ++++
Sbjct: 329 DGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILV 388

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++LVD+YAKCG  + A  IF  +  R+ + W +MIS + Q G  EE L++F+ M +   
Sbjct: 389 GNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASV 448

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D  +F  +L A + +  +  G K   S   +      +   + ++D+  + G +++A 
Sbjct: 449 IADQATFASLLRASASIASLSLG-KQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAV 507

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
              +    R+  S W  ++ A      A    +  K+++   L+PD
Sbjct: 508 QTFQEMPDRNIVS-WNAMISAYAQNGEAEATLKSFKEMVLSGLQPD 552



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 140/263 (53%), Gaps = 8/263 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           Q  +V  ++I LG    ++V ++LVD Y K   +D + ++F +M + +SVS +A++ GY 
Sbjct: 167 QITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYS 226

Query: 64  QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           + G  E  + +F EM+   L    F+F  VL A  GL  + LG+++H   I+ +   +V 
Sbjct: 227 KDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVF 286

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+D Y+K   V  A ++F +MP ++ +++N +ISG+A +G+ + A  +F ++    
Sbjct: 287 VSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTA 346

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
                  F  +LS  S+    + GR+  A  T       +I   N +VD+  + G  EEA
Sbjct: 347 FDRKQFPFATMLSIASNTLDWEMGRQIHAQ-TIVTTADSEILVGNSLVDMYAKCGKFEEA 405

Query: 240 ETLIENADCRHDSSL-WEVLLGA 261
           E +  N    H S++ W  ++ A
Sbjct: 406 EMIFTN--LTHRSAVPWTAMISA 426



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 103/186 (55%), Gaps = 6/186 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  + ++  Y K G + E+ ++FD M+++ +V+ + L+ GY Q   F+    +F +M+
Sbjct: 82  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 141

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               E D  +F  +L  C G        +V  Q I+      +I+ + LVD Y K   +D
Sbjct: 142 RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLD 201

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A Q+F +MP  + +++N+MI+G++++G  E+A+ +F +M   G KP   +F  VL  C+
Sbjct: 202 LACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CA 259

Query: 196 HMGLID 201
           ++GL D
Sbjct: 260 NIGLDD 265



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 41/267 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H+ +I  G   NV   S+L+D+Y KCG + ++ + F +M  +N VS +A++  
Sbjct: 468 LSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISA 527

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACA-------GLAALRLGKEVHCQYI 110
           Y Q G+ E+ ++ F+EM     + D  SF  VL AC+       GL       +++    
Sbjct: 528 YAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDP 587

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEAL 169
           RR         +++VD+  + G  + A ++  +MP+  + I W+S+++    +   E A 
Sbjct: 588 RREHY------ASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELAR 641

Query: 170 RIFD---DMTEGGTKPDHVSFIGVLSACS--------HMGLIDRGRKHFAS--------- 209
           R  D   +M E      +V+   + +A          H  + DRG K   +         
Sbjct: 642 RAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHE 701

Query: 210 ---MTKEYRIKPKIEHYNCMVDLLGRA 233
               +   R  P+IE     +D+L + 
Sbjct: 702 THMFSANDRCHPQIEEIRKKIDMLTKT 728



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%)

Query: 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
           Q   +   K+ +  + ++  Y K G +  A ++F  M  R  +TW  +I G++Q  + +E
Sbjct: 73  QLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKE 132

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           A  +F  M   GT+PD+V+F+ +LS C+
Sbjct: 133 AFELFVQMQRCGTEPDYVTFVTLLSGCN 160


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/335 (40%), Positives = 213/335 (63%), Gaps = 6/335 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKC--GLVDESHRVFDKMLKKNSVSSSALLQG 61
           QGK +H  VI  GL   V + +SL+ MY K     +DE+  +F+ +  K+ VS +++L G
Sbjct: 321 QGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTG 380

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G  E  ++ F  M      ID ++F  VLR+C+ LA L+LG++VH   ++     +
Sbjct: 381 FSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPN 440

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + S+L+ +Y+KCG ++ A + F   P  + I WNS+I G+AQ+GRG+ AL +F  M +
Sbjct: 441 GFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKD 500

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              K DH++F+ VL+ACSH+GL++ G     SM  +Y I P++EHY CM+DLLGRAG L+
Sbjct: 501 RRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLD 560

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+ LIE      D+ +W+ LLGAC T  +  +A +VA  ++EL+P+ H +YVLL +++ 
Sbjct: 561 EAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFG 620

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            + RWN+   I+ LMK  GVKK+PG SWIE  +++
Sbjct: 621 HLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEV 655



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 154/310 (49%), Gaps = 40/310 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH+ ++ +G  GNV   S+L+DMY KC  V+++  VF  +  +NSV+ +AL+ GY Q
Sbjct: 119 GQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQ 178

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD  +   +   ME    EID  +F  +L         +L  +VH + ++     D  +
Sbjct: 179 VGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTV 238

Query: 121 ESALVDLYAKCGCVDFAHQIF-LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
            +A++  Y++CG ++ A ++F   +  R+L+TWNSM++ +  N + EEA ++F +M   G
Sbjct: 239 CNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLG 298

Query: 180 TKPDHVSFIGVLSAC---SHMG--------LIDRG----------------RKHFASMTK 212
            +PD  ++  V+SA    SH G        +I RG                + H  SM +
Sbjct: 299 FEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDE 358

Query: 213 EYRIKPKIEH-----YNCMVDLLGRAGLLEEAETLIENADCRH---DSSLWEVLLGACTT 264
              I   +E+     +N ++    ++GL E+A    EN   ++   D   +  +L +C+ 
Sbjct: 359 ALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSD 418

Query: 265 FRNAHVAERV 274
                + ++V
Sbjct: 419 LATLQLGQQV 428



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 130/257 (50%), Gaps = 5/257 (1%)

Query: 9   HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF 68
           H   I  G   ++   ++++  Y KCG +  + ++F +  ++++VS + ++ G+   G+F
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 69  ESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           E+ +   + M+     +D +SFG +L+  A +  + +G++VH   ++     +V   SAL
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSAL 141

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D+YAKC  V+ A ++F  + +RN +TWN++ISG+AQ G    A  + D M   G + D 
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDD 201

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
            +F  +L+      L     +  A + K + +       N ++      G +E+AE + +
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVK-HGLASDTTVCNAIITAYSECGSIEDAERVFD 260

Query: 245 NADCRHDSSLWEVLLGA 261
            A    D   W  +L A
Sbjct: 261 GAIETRDLVTWNSMLAA 277



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 9/203 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VH  V+  G   N  V SSL+ MY KCG+++++ + FD   K +S++ ++L+ G
Sbjct: 422 LQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFG 481

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  + +F  M++    +D  +F  VL AC+ +  +  G           G   
Sbjct: 482 YAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPP 541

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
            +   A ++DL  + G +D A  +   MP   + + W +++      G  E A ++   +
Sbjct: 542 RMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHL 601

Query: 176 TEGGTKP-DHVSFIGVLSACSHM 197
            E   +P +H +++ + S   H+
Sbjct: 602 LE--LEPEEHCTYVLLSSMFGHL 622


>gi|18873857|gb|AAL79803.1|AC079874_26 putative pentatricopeptide repeat domain containing protein [Oryza
           sativa Japonica Group]
          Length = 391

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/330 (40%), Positives = 204/330 (61%), Gaps = 4/330 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH KVI  GL  +  V S++VDMY KCG++DE+ ++ D++  +  VS +A+L G+    +
Sbjct: 2   VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKE 61

Query: 68  FESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            E   + F EM ++    D F+F  VL  CA LA + LGK++H Q I++    D  I S 
Sbjct: 62  SEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISST 121

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           LVD+YAKCG +  +  +F ++  R+ ++WN+MI G+A +G G EALR+F+ M +    P+
Sbjct: 122 LVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPN 181

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
           H +F+ VL ACSH+GL D G ++F  MT  Y+++P++EH+ CMVD+LGR+   +EA   I
Sbjct: 182 HATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFI 241

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
            +   + D+ +W+ LL  C   ++  +AE  A  ++ L PD    Y+LL NVY   G+W 
Sbjct: 242 NSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWA 301

Query: 304 DAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           D  + R L+K   +KK PG SWIE  S+++
Sbjct: 302 DVSRTRRLLKQGRLKKEPGCSWIEVQSEMH 331



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 65/113 (57%), Gaps = 8/113 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK++H ++I   +  +  + S+LVDMY KCG + +S  VF+K+ K++ VS +A++ G
Sbjct: 97  IELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICG 156

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYI 110
           Y   G     +R+F  M++ ++     +F  VLRAC+ +     G    C+Y 
Sbjct: 157 YALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDG----CRYF 205


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/330 (40%), Positives = 204/330 (61%), Gaps = 6/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GKE+H  ++  GL  + VV S+L DMYGKCG ++E+  +FDKM+ ++ V+ +A++  
Sbjct: 219 LRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDR 278

Query: 62  YCQTG----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     F+    + R     + F+F  VL ACA   +  LGK+VH  Y+ R G   
Sbjct: 279 YFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVH-GYMTRVGFDP 337

Query: 118 V-IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
                SALV +Y+KCG +  A ++F + P  +L +W S+I+G+AQNG+ +EA+R F+ + 
Sbjct: 338 FSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLV 397

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + GT+PDH++F+GVLSAC+H GL+D+G  +F S+ ++Y +    +HY C++DLL R+G  
Sbjct: 398 KSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQF 457

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EAE +I     + D  LW  LLG C    N  +A+R A+ + E++P+   +YV L N+Y
Sbjct: 458 DEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIY 517

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
              G W++  KIR  M   GV K PG SWI
Sbjct: 518 ATAGMWSEVAKIRKTMDDRGVVKKPGLSWI 547



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 158/328 (48%), Gaps = 43/328 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK+VH  +   G    + + + L++MY KC  + +S ++FD+M +++  S + L+ G
Sbjct: 86  LQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISG 145

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRA----------------------------- 92
           Y + G  +    +F +M E D FS+  ++                               
Sbjct: 146 YAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFT 205

Query: 93  -------CAGLAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQM 144
                   A +  LR+GKE+H  YI R+G   D ++ SAL D+Y KCG ++ A  IF +M
Sbjct: 206 VSSALAAAAAVPCLRIGKEIH-GYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKM 264

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
             R+++TW +MI  + Q+GR +E   +F D+   G +P+  +F GVL+AC++    + G+
Sbjct: 265 VDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGK 324

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           K    MT+     P     + +V +  + G +  AE + +    + D   W  L+     
Sbjct: 325 KVHGYMTR-VGFDPFSFAASALVHMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAGYAQ 382

Query: 265 FRNAHVAERVAKKIME--LKPDCHLSYV 290
                 A R  + +++   +PD H+++V
Sbjct: 383 NGQPDEAIRYFELLVKSGTQPD-HITFV 409



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 77/132 (58%), Gaps = 6/132 (4%)

Query: 63  CQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVIIE 121
           CQ    +  ++I  ++++     +  ++++C     L+ GK+VH Q+I+ SG    + I 
Sbjct: 50  CQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVH-QHIKLSGFVPGLFIL 108

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + L+++YAKC  +  + ++F +MP R+L +WN +ISG+A+ G  +EA  +FD M E    
Sbjct: 109 NRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPER--- 165

Query: 182 PDHVSFIGVLSA 193
            D+ S+  ++S 
Sbjct: 166 -DNFSWTAMISG 176


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 209/337 (62%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VHA+++  GL  +  V S L+DMYGKCG V  +  VFD +  +N V  +AL+  
Sbjct: 237 LQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTA 296

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G FE  + +F    RE    + ++F ++L ACAG+AALR G  +H + + + G K+
Sbjct: 297 YLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHAR-VEKLGFKN 355

Query: 118 -VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            VI+ +AL+++Y+K G +D ++ +F  M  R++ITWN+MI G++ +G G++AL++F DM 
Sbjct: 356 HVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMV 415

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                P++V+FIGVLSA SH+GL+  G  +   + + ++I+P +EHY CMV LL RAGLL
Sbjct: 416 SAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLL 475

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EAE  ++    + D   W  LL AC   RN  +  R+A+ ++++ P    +Y LL N+Y
Sbjct: 476 DEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMY 535

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
               RW+    IR LM+   +KK PG SW++  + ++
Sbjct: 536 AKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIH 572



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 135/266 (50%), Gaps = 9/266 (3%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS---VSSSA 57
           R+K+G + H  +   GL  +  V+S+LV MY +C  V+ + +V D +  ++     S ++
Sbjct: 132 RVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNS 191

Query: 58  LLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +L    ++G  E  + + R M +     D  ++  V+  CA +  L+LG  VH + +R  
Sbjct: 192 VLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGG 251

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D  + S L+D+Y KCG V  A  +F  +  RN++ W ++++ + QNG  EE+L +F 
Sbjct: 252 LMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFT 311

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M   GT P+  +F  +L+AC+ +  +  G    A + K    K  +   N ++++  ++
Sbjct: 312 CMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEK-LGFKNHVIVRNALINMYSKS 370

Query: 234 GLLEEAETLIENADCRHDSSLWEVLL 259
           G ++ +  +  +   R D   W  ++
Sbjct: 371 GSIDSSYNVFTDMIYR-DIITWNAMI 395



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 135/271 (49%), Gaps = 13/271 (4%)

Query: 2   LKQGKEVHAKVITLGLCGN---VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           L  GK +HA+ +      N   +   +SLV +Y KCG +  +  +FD M  +N VS + L
Sbjct: 28  LPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVL 87

Query: 59  LQGYCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           + GY   G+   V+ +F+ M  +     + + F   L AC+    ++ G + H    +  
Sbjct: 88  MAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFG 147

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALR 170
                 ++SALV +Y++C  V+ A Q+   +P   V ++ ++NS+++   ++GRGEEA+ 
Sbjct: 148 LVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVE 207

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +   M +     DHV+++GV+  C+ +  +  G +  A + +   +  +    + ++D+ 
Sbjct: 208 VLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVG-SMLIDMY 266

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           G+ G +  A  + +    R +  +W  L+ A
Sbjct: 267 GKCGEVLNARNVFDGLQNR-NVVVWTALMTA 296



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKD---VIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           CA +  L  GK +H Q++ R+   +   +   ++LV LY KCG +  A  +F  MP+RN+
Sbjct: 22  CADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNV 81

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTE-GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           ++WN +++G+   G   E L +F +M       P+   F   LSACSH G +  G +
Sbjct: 82  VSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQ 138


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 205/336 (61%), Gaps = 7/336 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H++ I       ++V +SLVDMY KCG   E++R+F  +  ++SV  +A++  
Sbjct: 416 LDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISS 475

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  +++F EM+      D  ++  ++RACA LA+L LGK++H   I      +
Sbjct: 476 YVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISN 535

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   SALVD+YAKCG +  A Q+F +MPVRN ++WN++IS +AQNG G+  LR+F++M  
Sbjct: 536 VFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVR 595

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD VS + +L ACSH GL++ G ++F SMT+ Y++ PK EHY   +D+L R G  +
Sbjct: 596 SGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFD 655

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK--PDCHLSYVLLDNV 295
           EAE L+       D  +W  +L +C   +N  +A++ A ++  +K   D    YV + N+
Sbjct: 656 EAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDA-APYVTMSNI 714

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           Y A G W++  K++  M+  GVKK+P  SW+E   K
Sbjct: 715 YAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHK 750



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 145/286 (50%), Gaps = 8/286 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH  V+      NV V ++L+D Y K   V E+ ++F +M + + +S + L+  Y  
Sbjct: 318 GQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAW 377

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  + +F+E++        F F  +L   A    L +G+++H Q I      ++++
Sbjct: 378 NGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILV 437

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++LVD+YAKCG    A++IF  + +++ + W +MIS + Q G  E+ L++F +M     
Sbjct: 438 GNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKI 497

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D  ++  ++ AC+ +  +  G++  + +     I   +   + +VD+  + G +++A 
Sbjct: 498 GADAATYASIVRACASLASLTLGKQLHSHIIGSGYIS-NVFSGSALVDMYAKCGSIKDAL 556

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            + +    R+  S W  L+ A     +     R+ ++++   L+PD
Sbjct: 557 QMFQEMPVRNSVS-WNALISAYAQNGDGDCTLRLFEEMVRSGLQPD 601



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 137/260 (52%), Gaps = 6/260 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++VH+ VI LG    +VV +SL+D Y K   +  + ++F+ + +++SV+ +ALL GY + 
Sbjct: 218 RQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKE 277

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G     I +F +M+E+      F+F  +L A   L  +  G++VH   ++ +   +V + 
Sbjct: 278 GFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVA 337

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +AL+D Y+K   V  A ++F +MP  + I++N +++ +A NGR +E+L +F ++   G  
Sbjct: 338 NALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFD 397

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
             +  F  +LS  +    +D GR+   S T       +I   N +VD+  + G   EA  
Sbjct: 398 RRNFPFATLLSIAAISLNLDIGRQ-IHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANR 456

Query: 242 LIENADCRHDSSLWEVLLGA 261
           +  +   +  S  W  ++ +
Sbjct: 457 IFSDLAIQ-SSVPWTAMISS 475



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 99/190 (52%), Gaps = 4/190 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+   ++++  Y K G + E+  +FD M ++ +V+ + L+ GY Q   F     +F EM 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               + D  S   +L       ++   ++VH   I+      +++ ++L+D Y K   + 
Sbjct: 191 RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLG 250

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A Q+F  +P R+ +T+N++++G+++ G   EA+ +F  M E G +P   +F  +L+A  
Sbjct: 251 LAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGI 310

Query: 196 HMGLIDRGRK 205
            +  I+ G++
Sbjct: 311 QLDDIEFGQQ 320



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 35/158 (22%)

Query: 48  LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHC 107
              N+  S+ L++ + Q GD     ++F EM   ++FS   ++                 
Sbjct: 97  FNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMG--------------- 141

Query: 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
                               Y K G +  A  +F  M  R  +TW  +I G+AQN +  E
Sbjct: 142 --------------------YIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFRE 181

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           A  +F +M   G  PDHVS   +LS  +    ++  R+
Sbjct: 182 AFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQ 219


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/333 (40%), Positives = 201/333 (60%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+H  ++  G  G+  V S+++DMY KCG +D +H+ F  +  K++V  ++++  
Sbjct: 367 LTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITS 426

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  I +FR+M     + D  S    L ACA L AL  GKE+H   +R +   D
Sbjct: 427 CSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSD 486

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  ESAL+D+Y+KCG +D A ++F  M  +N ++WNS+I+ +  +GR +++L +F  M  
Sbjct: 487 LFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLG 546

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PDHV+F+ ++SAC H G +D G  +F  MT+E  I  ++EHY CMVDL GRAG L 
Sbjct: 547 DGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLN 606

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  +I +     D+ +W  LLGAC    N  +AE  ++ + +L P     YVLL NV+ 
Sbjct: 607 EAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHA 666

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
             G+W    KIR+LMK  GV+K+PG SWI+ N+
Sbjct: 667 NAGQWESVLKIRSLMKERGVQKVPGCSWIDVNN 699



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 147/263 (55%), Gaps = 8/263 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESS--LVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           G ++H  V++ GL  +  V ++  L+D+Y KC  V+ + ++FD+    + V  +A++ GY
Sbjct: 267 GSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGY 326

Query: 63  CQTGDFESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G   + + IFR    E    +  +   VL ACAGLAAL LGKE+H   ++       
Sbjct: 327 VLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSC 386

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + SA++D+YAKCG +D AHQ F+ +  ++ + WNSMI+  +QNG+ EEA+ +F  M   
Sbjct: 387 YVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMA 446

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           GTK D VS    LSAC+++  +  G++  A M +    +  +   + ++D+  + G L+ 
Sbjct: 447 GTKYDCVSISAALSACANLPALHYGKEIHAFMMRG-AFRSDLFAESALIDMYSKCGNLDL 505

Query: 239 AETLIENADCRHDSSLWEVLLGA 261
           A  + +  + +++ S W  ++ A
Sbjct: 506 ACRVFDTMEEKNEVS-WNSIIAA 527



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 115/208 (55%), Gaps = 4/208 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG++ HA+++  G+  N ++ + L+ MY  CG   ++  +F ++    S   + +++G
Sbjct: 62  LSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRG 121

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G F+  +  + +M       D ++F  V++AC GL ++ LG+ VH +        D
Sbjct: 122 FTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELD 181

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S+L+  Y++ GC+  A  +F +MP ++ + WN M++G+ +NG  + A  +F +M  
Sbjct: 182 VFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRR 241

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             T P+ V+F  VLS C+   +I+ G +
Sbjct: 242 TETNPNSVTFACVLSVCASEIMINFGSQ 269



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 4/172 (2%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ C   + L  G++ H Q +      + I+ + L+ +Y  CG    A  IF Q+ +  
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHF 207
              WN MI GF   G+ + AL  +  M   GT PD  +F  V+ AC  +  +  GR  H 
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
                 + +   +   + ++      G + +A  L +    + D  LW V+L
Sbjct: 172 KIQFMGFELDVFVG--SSLIKFYSENGCIHDARYLFDRMPSK-DGVLWNVML 220


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 208/333 (62%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G+E+H+  +     G   VES+L+DMY KCG +D SH +F K+  K+ V+ ++++  
Sbjct: 465 MKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISS 524

Query: 62  YCQTGDFESVIRIFREM--EEIDLFSFGI--VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G+ E  + +FREM  E +   +  I  VL ACA L A+  GKE+H   I+     D
Sbjct: 525 FAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRAD 584

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  ESAL+D+Y KCG +++AH++F  MP +N ++WNS+I+ +   G  +E++ +   M E
Sbjct: 585 LFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQE 644

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K DHV+F+ ++SAC+H G +  G + F  MT+EY+I P++EH+ CMVDL  RAG L+
Sbjct: 645 EGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLD 704

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LI +   + D+ +W  LL AC   RN  +AE  ++++ +L P     YVL+ N+  
Sbjct: 705 KAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINA 764

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
             GRW+   K+R LMK + V+K+PG SW++ N+
Sbjct: 765 VAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNN 797



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 150/264 (56%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             QGKE+H  ++   +  +V + S+LVD+Y KC  V  +  V+D     + V  S ++ G
Sbjct: 364 FNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISG 423

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  +++FR + E     +  +   VL ACA +AA++LG+E+H   ++ +    
Sbjct: 424 YVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGR 483

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +ESAL+D+YAKCG +D +H IF ++  ++ +TWNSMIS FAQNG  EEAL +F +M  
Sbjct: 484 CYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCM 543

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K  +V+   VLSAC+ +  I  G++    + K   I+  +   + ++D+ G+ G LE
Sbjct: 544 EGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKG-PIRADLFAESALIDMYGKCGNLE 602

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A  + E+   +++ S W  ++ +
Sbjct: 603 WAHRVFESMPEKNEVS-WNSIIAS 625



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 116/205 (56%), Gaps = 4/205 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VH    TLGL G++ V S+L+ MY   GL+ ++ +VFD M +++ V  + ++ GY +
Sbjct: 165 GRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVK 224

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G   S + +F +M     E +  +    L   A  + L  G ++H   ++     +V +
Sbjct: 225 AGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAV 284

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + LV +YAKC C+D   ++F  MP  +L+TWN MISG  QNG  ++AL +F DM + G 
Sbjct: 285 ANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGI 344

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK 205
           +PD V+ + +L A + +   ++G++
Sbjct: 345 RPDSVTLVSLLPALTDLNGFNQGKE 369



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 132/262 (50%), Gaps = 8/262 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H   +  GL   V V ++LV MY KC  +D+  ++F  M + + V+ + ++ G  Q
Sbjct: 266 GVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQ 325

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  + +F +M++     D  +   +L A   L     GKE+H   +R     DV +
Sbjct: 326 NGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFL 385

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVD+Y KC  V  A  ++      +++  ++MISG+  NG  +EA+++F  + E G 
Sbjct: 386 VSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGI 445

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           +P+ V+   VL AC+ M  +  G++ H  ++   Y  +  +E  + ++D+  + G L+ +
Sbjct: 446 RPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVE--SALMDMYAKCGRLDLS 503

Query: 240 ETLIENADCRHDSSLWEVLLGA 261
             +      + D   W  ++ +
Sbjct: 504 HYIFSKISAK-DEVTWNSMISS 524



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 127/273 (46%), Gaps = 14/273 (5%)

Query: 2   LKQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS---SA 57
           L  G +VH + +T GL   +  +++ LV MY       ++  VF  + +  +  +   + 
Sbjct: 55  LSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNW 114

Query: 58  LLQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           L++G    GD+ S +  + +M         D  +F  V+++CA L A+ LG+ VH +  R
Sbjct: 115 LIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH-RTAR 173

Query: 112 RSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
             G   D+ + SAL+ +YA  G +  A Q+F  M  R+ + WN M+ G+ + G    A+ 
Sbjct: 174 TLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVE 233

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F DM   G +P+  +    LS  +    +  G +   ++  +Y ++ ++   N +V + 
Sbjct: 234 LFGDMRASGCEPNFATLACFLSVSATESDLFFGVQ-LHTLAVKYGLESEVAVANTLVSMY 292

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
            +   L++   L      R D   W  ++  C 
Sbjct: 293 AKCKCLDDGWKLFGLMP-RDDLVTWNGMISGCV 324



 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 8/177 (4%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRS-GCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-- 145
           VLR C   + L LG +VH + +       D  +++ LV +Y        A  +F  +P  
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRG 104

Query: 146 -VRNLITWNSMISGFAQNGRGEEALRIFDDMT--EGGTKPDHVSFIGVLSACSHMGLIDR 202
                + WN +I G    G    AL  +  M        PD  +F  V+ +C+ +G I  
Sbjct: 105 AAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIAL 164

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           GR       +   +   +   + ++ +    GLL +A  + +    R D  LW V++
Sbjct: 165 GRL-VHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAER-DCVLWNVMM 219


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/340 (39%), Positives = 216/340 (63%), Gaps = 14/340 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+ Q +E+   +     C NV   ++++  Y + G + ++   FD+M +++S+S +A++ 
Sbjct: 231 RMDQARELFEAMP----CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIA 286

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR---RS 113
           GY Q+G  E  + +F EM    E ++  +F   L  CA +AAL LGK+VH + ++    S
Sbjct: 287 GYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES 346

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
           GC    + +AL+ +Y KCG +D A+ +F  +  + +++WN+MI+G+A++G G+EAL +F+
Sbjct: 347 GC---YVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFE 403

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M + G  PD V+ +GVLSACSH GL+D+G ++F SMT++Y I    +HY CM+DLLGRA
Sbjct: 404 SMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRA 463

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           G L++A+ L++N     D++ W  LLGA     N  + E+ AK I E++PD    YVLL 
Sbjct: 464 GRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLS 523

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           N+Y A GRW D  ++R  M+  GVKK+PG SW+E  +K++
Sbjct: 524 NLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIH 563



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 128/266 (48%), Gaps = 19/266 (7%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y + G V E+  +FD+M  KNS+S + +L  Y Q G  E   R+F    
Sbjct: 60  DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKA 119

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYI-RRSGCKDVIIESALVDLYAKCGCVDFAH 138
           + +L S+      C     ++  + V  + I  R   +D +  + ++  YA+ G +  A 
Sbjct: 120 DWELISWN-----CMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQ 174

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F + PVR++ TW +M+SG+ QNG  +EA R+FD M E  +    VS+  +++      
Sbjct: 175 RLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS----VSWNAIIAGYVQCK 230

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
            +D+ R+ F +M  +      +  +N M+    + G + +A    +    R DS  W  +
Sbjct: 231 RMDQARELFEAMPCQ-----NVSSWNTMITGYAQNGDIAQARNFFDRMPQR-DSISWAAI 284

Query: 259 LGACTTFRNAHVAERVAKKIMELKPD 284
           +     +  +   E      +E+K D
Sbjct: 285 IAG---YAQSGYGEEALHLFVEMKRD 307



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 117/263 (44%), Gaps = 64/263 (24%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHR------------------- 42
           +K+ KE+  ++     C N +  + ++  Y + G ++++ R                   
Sbjct: 77  VKEAKEIFDEMP----CKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGG 132

Query: 43  ------------VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSF---- 86
                       +FD+M +++ VS + ++ GY Q G+     R+F E    D+F++    
Sbjct: 133 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 192

Query: 87  -----------------GIVLRACAGLAALRLGKEVHCQYIRRS-------GCKDVIIES 122
                            G+  +      A+  G  V C+ + ++        C++V   +
Sbjct: 193 SGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGY-VQCKRMDQARELFEAMPCQNVSSWN 251

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            ++  YA+ G +  A   F +MP R+ I+W ++I+G+AQ+G GEEAL +F +M   G + 
Sbjct: 252 TMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERL 311

Query: 183 DHVSFIGVLSACSHMGLIDRGRK 205
           +  +F   LS C+ +  ++ G++
Sbjct: 312 NRSTFTSTLSTCAEIAALELGKQ 334



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 14/170 (8%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           LR C     LR  + +  Q   R    DV+  +A++  YA+ G V  A +IF +MP +N 
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPER----DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS 92

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           I+WN M++ + QNGR E+A R+F    E     + +S+  ++        +   R  F  
Sbjct: 93  ISWNGMLAAYVQNGRIEDARRLF----ESKADWELISWNCMMGGYVKRNRLVDARGIFDR 148

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           M +   +      +N M+    + G L EA+ L E +  R D   W  ++
Sbjct: 149 MPERDEVS-----WNTMISGYAQNGELLEAQRLFEESPVR-DVFTWTAMV 192


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + QGK+VHA  I  G   ++ V S ++DMY KCG +  +   FD +   + V+ + ++ G
Sbjct: 533 INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISG 592

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G+ E    +F +M  +    D F+   + +A + L AL  G+++H   ++ +   D
Sbjct: 593 CIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTND 652

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++LVD+YAKCG +D A+ +F ++ + N+  WN+M+ G AQ+G G+E L++F  M  
Sbjct: 653 PFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKS 712

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+FIGVLSACSH GL+    KH  SM  +Y IKP+IEHY+C+ D LGRAGL++
Sbjct: 713 LGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVK 772

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +AE LIE+      +S++  LL AC    +    +RVA K++EL+P    +YVLL N+Y 
Sbjct: 773 QAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYA 832

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A  +W++    RT+MK   VKK PG SWIE  +K++
Sbjct: 833 AASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 11/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K+VH   I +    +  V ++L+D Y +   + E+  +F++    + V+ +A++ G
Sbjct: 433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERH-NFDLVAWNAMMAG 491

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q+ D    +++F  M    E  D F+   V + C  L A+  GK+VH   I+     D
Sbjct: 492 YTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLD 551

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S ++D+Y KCG +  A   F  +PV + + W +MISG  +NG  E A  +F  M  
Sbjct: 552 LWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRL 611

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G  PD  +   +  A S +  +++GR+ H  ++       P +     +VD+  + G +
Sbjct: 612 MGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCGSI 669

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPD 284
           ++A  L +  +  + ++ W  +L             ++ K++  L  KPD
Sbjct: 670 DDAYCLFKRIEMMNITA-WNAMLVGLAQHGEGKETLQLFKQMKSLGIKPD 718



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 149/293 (50%), Gaps = 16/293 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH   + LGL   + V +SL++MY K      +  VFD M +++ +S ++++ G
Sbjct: 331 LALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAG 390

Query: 62  YCQTG-DFESV---IRIFREMEEIDLFSFGIVLRACAGLA-ALRLGKEVHCQYIRRSGCK 116
             Q G + E+V   +++ R   + D ++   VL+A + L   L L K+VH   I+ +   
Sbjct: 391 IAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVS 450

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + +AL+D Y++  C+  A +I  +    +L+ WN+M++G+ Q+  G + L++F  M 
Sbjct: 451 DSFVSTALIDAYSRNRCMKEA-EILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMH 509

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           + G + D  +   V   C  +  I++G++ H  ++   Y +   +   + ++D+  + G 
Sbjct: 510 KQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGD 567

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTF----RNAHVAERVAKKIMELKPD 284
           +  A+   ++     D + W  ++  C       R  HV  ++  ++M + PD
Sbjct: 568 MSAAQFAFDSIPVPDDVA-WTTMISGCIENGEEERAFHVFSQM--RLMGVLPD 617



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 18/221 (8%)

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           L  Y  +G + ++++ F +M E D+     +F ++L     + +L LG++VHC  ++   
Sbjct: 287 LSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGL 346

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
              + + ++L+++Y K     FA  +F  M  R+LI+WNS+I+G AQNG   EA+ +F  
Sbjct: 347 DLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQ 406

Query: 175 MTEGGTKPDHVSFIGVLSACSHM--GLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLL 230
           +   G KPD  +   VL A S +  GL    + H  ++    +I    + +    ++D  
Sbjct: 407 LLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAI----KINNVSDSFVSTALIDAY 462

Query: 231 GRAGLLEEAETLIENADCRHDSSL--WEVLLGACTTFRNAH 269
            R   ++EAE L E    RH+  L  W  ++   T   + H
Sbjct: 463 SRNRCMKEAEILFE----RHNFDLVAWNAMMAGYTQSHDGH 499



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 11/196 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK  HA+++T        + ++L+ MY KCG +  + RVFDKM  ++ VS +++L  
Sbjct: 55  LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114

Query: 62  YCQTGD-----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q+ +      +    +FR + +  +++  + L     L  L  G     +      CK
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLC-LHSGYVWASESFHGYACK 173

Query: 117 -----DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                D  +  ALV++Y K G V     +F +MP R+++ WN M+  + + G  EEA+ +
Sbjct: 174 IGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 233

Query: 172 FDDMTEGGTKPDHVSF 187
                  G  P+ ++ 
Sbjct: 234 SSAFHSSGLNPNEITL 249



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           FG  LR     + L LGK  H + +      +  + + L+ +Y+KCG + +A ++F +MP
Sbjct: 43  FGF-LRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMP 101

Query: 146 VRNLITWNSMISGFAQNGRG-----EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
            R+L++WNS+++ +AQ+        ++A  +F  + +       ++   +L  C H G +
Sbjct: 102 DRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
               + F     +  +         +V++  + G ++E + L E    R D  LW ++L 
Sbjct: 162 -WASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLK 219

Query: 261 A 261
           A
Sbjct: 220 A 220


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 134/333 (40%), Positives = 201/333 (60%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+H  ++  G  G+  V S+++DMY KCG +D +H+ F  +  K++V  ++++  
Sbjct: 466 LTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITS 525

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  I +FR+M     + D  S    L ACA L AL  GKE+H   +R +   D
Sbjct: 526 CSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSD 585

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  ESAL+D+Y+KCG +D A ++F  M  +N ++WNS+I+ +  +GR +++L +F  M  
Sbjct: 586 LFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLG 645

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PDHV+F+ ++SAC H G +D G  +F  MT+E  I  ++EHY CMVDL GRAG L 
Sbjct: 646 DGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLN 705

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  +I +     D+ +W  LLGAC    N  +AE  ++ + +L P     YVLL NV+ 
Sbjct: 706 EAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHA 765

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
             G+W    KIR+LMK  GV+K+PG SWI+ N+
Sbjct: 766 NAGQWESVLKIRSLMKERGVQKVPGCSWIDVNN 798



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 152/264 (57%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGKE+H  +I  G+  +V ++S+L+D+Y KC  V+ + ++FD+    + V  +A++ G
Sbjct: 365 LRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISG 424

Query: 62  YCQTGDFESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G   + + IFR    E    +  +   VL ACAGLAAL LGKE+H   ++      
Sbjct: 425 YVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGS 484

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SA++D+YAKCG +D AHQ F+ +  ++ + WNSMI+  +QNG+ EEA+ +F  M  
Sbjct: 485 CYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGM 544

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GTK D VS    LSAC+++  +  G++  A M +    +  +   + ++D+  + G L+
Sbjct: 545 AGTKYDCVSISAALSACANLPALHYGKEIHAFMMRG-AFRSDLFAESALIDMYSKCGNLD 603

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A  + +  + +++ S W  ++ A
Sbjct: 604 LACRVFDTMEEKNEVS-WNSIIAA 626



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 137/264 (51%), Gaps = 8/264 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H  V++ GL  +  V ++L+ MY KCG + ++ R+FD M K + V+ + ++ GY Q
Sbjct: 267 GSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQ 326

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +    +F EM     + D  +F   L   +  A LR GKE+HC  IR     DV +
Sbjct: 327 NGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFL 386

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           +SAL+D+Y KC  V+ A +IF Q    +++   +MISG+  NG    AL IF  + +   
Sbjct: 387 KSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERM 446

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA- 239
           + + V+   VL AC+ +  +  G++    + K           + ++D+  + G L+ A 
Sbjct: 447 RANSVTLASVLPACAGLAALTLGKELHGHILKNGH-GGSCYVGSAIMDMYAKCGRLDLAH 505

Query: 240 ETLIENADCRHDSSLWEVLLGACT 263
           +T I  +D   D+  W  ++ +C+
Sbjct: 506 QTFIGISD--KDAVCWNSMITSCS 527



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 4/205 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VH K+  +G   +V V SSL+  Y + G + ++  +FD+M  K+ V  + +L GY +
Sbjct: 166 GRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVK 225

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD+++   +F EM   +      +F  VL  CA    +  G ++H   +      D  +
Sbjct: 226 NGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPV 285

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L+ +YAKCG +  A ++F  MP  +L+TWN MISG+ QNG  +EA  +F +M     
Sbjct: 286 ANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARM 345

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK 205
           KPD ++F   L   S    + +G++
Sbjct: 346 KPDSITFSSFLPLLSEGATLRQGKE 370



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 131/248 (52%), Gaps = 7/248 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG++ HA+++  G+  N ++ + L+ MY  CG   ++  +F ++    S   + +++G
Sbjct: 62  LSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRG 121

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G F+  +  + +M       D ++F  V++AC GL ++ LG+ VH +        D
Sbjct: 122 FTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELD 181

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S+L+  Y++ GC+  A  +F +MP ++ + WN M++G+ +NG  + A  +F +M  
Sbjct: 182 VFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRR 241

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             T P+ V+F  VLS C+   +I+ G + H   ++    +   +   N ++ +  + G L
Sbjct: 242 TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVA--NTLLAMYAKCGHL 299

Query: 237 EEAETLIE 244
            +A  L +
Sbjct: 300 FDARRLFD 307



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 4/172 (2%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ C   + L  G++ H Q +      + I+ + L+ +Y  CG    A  IF Q+ +  
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHF 207
              WN MI GF   G+ + AL  +  M   GT PD  +F  V+ AC  +  +  GR  H 
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
                 + +   +   + ++      G + +A  L +    + D  LW V+L
Sbjct: 172 KIQFMGFELDVFVG--SSLIKFYSENGCIHDARYLFDRMPSK-DGVLWNVML 220


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 208/333 (62%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G+E+H+  +     G   VES+L+DMY KCG +D SH +F K+  K+ V+ ++++  
Sbjct: 465 MKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISS 524

Query: 62  YCQTGDFESVIRIFREM--EEIDLFSFGI--VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G+ E  + +FREM  E +   +  I  VL ACA L A+  GKE+H   I+     D
Sbjct: 525 FAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRAD 584

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  ESAL+D+Y KCG +++AH++F  MP +N ++WNS+I+ +   G  +E++ +   M E
Sbjct: 585 LFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQE 644

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K DHV+F+ ++SAC+H G +  G + F  MT+EY+I P++EH+ CMVDL  RAG L+
Sbjct: 645 EGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLD 704

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LI +   + D+ +W  LL AC   RN  +AE  ++++ +L P     YVL+ N+  
Sbjct: 705 KAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINA 764

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
             GRW+   K+R LMK + V+K+PG SW++ N+
Sbjct: 765 VAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNN 797



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 150/264 (56%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             QGKE+H  ++   +  +V + S+LVD+Y KC  V  +  V+D     + V  S ++ G
Sbjct: 364 FNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISG 423

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  +++FR + E     +  +   VL ACA +AA++LG+E+H   ++ +    
Sbjct: 424 YVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGR 483

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +ESAL+D+YAKCG +D +H IF ++  ++ +TWNSMIS FAQNG  EEAL +F +M  
Sbjct: 484 CYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCM 543

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K  +V+   VLSAC+ +  I  G++    + K   I+  +   + ++D+ G+ G LE
Sbjct: 544 EGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKG-PIRADLFAESALIDMYGKCGNLE 602

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A  + E+   +++ S W  ++ +
Sbjct: 603 WAHRVFESMPEKNEVS-WNSIIAS 625



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 116/205 (56%), Gaps = 4/205 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VH    TLGL G++ V S+L+ MY   GL+ ++ +VFD M +++ V  + ++ GY +
Sbjct: 165 GRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVK 224

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G   S + +F +M     E +  +    L   A  + L  G ++H   ++     +V +
Sbjct: 225 AGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAV 284

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + LV +YAKC C+D   ++F  MP  +L+TWN MISG  QNG  ++AL +F DM + G 
Sbjct: 285 ANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGI 344

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK 205
           +PD V+ + +L A + +   ++G++
Sbjct: 345 RPDSVTLVSLLPALTDLNGFNQGKE 369



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 132/262 (50%), Gaps = 8/262 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H   +  GL   V V ++LV MY KC  +D+  ++F  M + + V+ + ++ G  Q
Sbjct: 266 GVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQ 325

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  + +F +M++     D  +   +L A   L     GKE+H   +R     DV +
Sbjct: 326 NGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFL 385

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVD+Y KC  V  A  ++      +++  ++MISG+  NG  +EA+++F  + E G 
Sbjct: 386 VSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGI 445

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           +P+ V+   VL AC+ M  +  G++ H  ++   Y  +  +E  + ++D+  + G L+ +
Sbjct: 446 RPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVE--SALMDMYAKCGRLDLS 503

Query: 240 ETLIENADCRHDSSLWEVLLGA 261
             +      + D   W  ++ +
Sbjct: 504 HYIFSKISAK-DEVTWNSMISS 524



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 127/273 (46%), Gaps = 14/273 (5%)

Query: 2   LKQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS---SA 57
           L  G +VH + +T GL   +  +++ LV MY       ++  VF  + +  +  +   + 
Sbjct: 55  LSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNW 114

Query: 58  LLQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           L++G    GD+ S +  + +M         D  +F  V+++CA L A+ LG+ VH +  R
Sbjct: 115 LIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH-RTAR 173

Query: 112 RSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
             G   D+ + SAL+ +YA  G +  A Q+F  M  R+ + WN M+ G+ + G    A+ 
Sbjct: 174 TLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVE 233

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F DM   G +P+  +    LS  +    +  G +   ++  +Y ++ ++   N +V + 
Sbjct: 234 LFGDMRASGCEPNFATLACFLSVSATESDLFFGVQ-LHTLAVKYGLESEVAVANTLVSMY 292

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
            +   L++   L      R D   W  ++  C 
Sbjct: 293 AKCKCLDDGWKLFGLMP-RDDLVTWNGMISGCV 324



 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 8/177 (4%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRS-GCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-- 145
           VLR C   + L LG +VH + +       D  +++ LV +Y        A  +F  +P  
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRG 104

Query: 146 -VRNLITWNSMISGFAQNGRGEEALRIFDDMT--EGGTKPDHVSFIGVLSACSHMGLIDR 202
                + WN +I G    G    AL  +  M        PD  +F  V+ +C+ +G I  
Sbjct: 105 AAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIAL 164

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           GR       +   +   +   + ++ +    GLL +A  + +    R D  LW V++
Sbjct: 165 GRL-VHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAER-DCVLWNVMM 219


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L QGK++HA  I  G   ++ V S ++DMY KCG +  +  VF+ +   + V+ ++++ G
Sbjct: 1123 LDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISG 1182

Query: 62   YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                G+ +  +RI+  M +     D ++F  +++A + + AL  G+++H   I+     D
Sbjct: 1183 CVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSD 1242

Query: 118  VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
              + ++LVD+YAKCG ++ A+++F +M VRN+  WN+M+ G AQ+G  EEA+ +F  M  
Sbjct: 1243 PFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKS 1302

Query: 178  GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             G +PD VSFIG+LSACSH GL     ++  SM  +Y I+P+IEHY+C+VD LGRAGL++
Sbjct: 1303 HGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQ 1362

Query: 238  EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            EA+ +IE    +  +S+   LLGAC    +    +RVA ++  L+P    +YVLL N+Y 
Sbjct: 1363 EADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYA 1422

Query: 298  AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A  RW+D    R +MK   VKK PG SWI+  + L+
Sbjct: 1423 AANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLH 1458



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 141/290 (48%), Gaps = 10/290 (3%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L   +++H   +  G   +  V ++L+D+Y K G ++E+  +F      +    +A++ G
Sbjct: 1022 LNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFG 1081

Query: 62   YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            Y    D +  + +F    +  E+ D  +     +AC  L  L  GK++H   I+     D
Sbjct: 1082 YIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSD 1141

Query: 118  VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            + + S ++D+Y KCG +  A  +F  +   + + W SMISG   NG  ++ALRI+  M +
Sbjct: 1142 LHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQ 1201

Query: 178  GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLL 236
                PD  +F  ++ A S +  +++GR+  A++ K +    P +     +VD+  + G +
Sbjct: 1202 SRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNI 1259

Query: 237  EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            E+A  L +  + R + +LW  +L       NA  A  + K +    ++PD
Sbjct: 1260 EDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPD 1308



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 65   TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             GD    I  F  M     + D  +  +VL A AG   L LGK+VH   ++     DV +
Sbjct: 882  AGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSV 941

Query: 121  ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
             ++LV++Y+K GC  FA ++F  M   +LI+WNSMIS  AQ+   EE++ +F D+   G 
Sbjct: 942  ANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGL 1001

Query: 181  KPDHVSFIGVLSACSHMGLIDR---GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            KPDH +   VL ACS   LID     R+      K   I         ++D+  ++G +E
Sbjct: 1002 KPDHFTLASVLRACS--SLIDGLNISRQIHVHALKTGNIADSFV-ATTLIDVYSKSGKME 1058

Query: 238  EAETLIENADCRHDSSLWEVLL 259
            EAE L +N D   D + W  ++
Sbjct: 1059 EAEFLFQNKD-DLDLACWNAMM 1079



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 142/294 (48%), Gaps = 17/294 (5%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L+ GK+VH   +  GL  +V V +SLV+MY K G    +  VF+ M   + +S ++++  
Sbjct: 920  LELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISS 979

Query: 62   YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLA-ALRLGKEVHCQYIRRSGCK 116
              Q+   E  + +F     E  + D F+   VLRAC+ L   L + +++H   ++     
Sbjct: 980  CAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIA 1039

Query: 117  DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            D  + + L+D+Y+K G ++ A  +F      +L  WN+M+ G+     G++AL +F  + 
Sbjct: 1040 DSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIH 1099

Query: 177  EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE---HYNC-MVDLLGR 232
            + G K D ++      AC  + L+D+G++  A     + IK   +   H N  ++D+  +
Sbjct: 1100 KSGEKSDQITLATAAKACGCLVLLDQGKQIHA-----HAIKAGFDSDLHVNSGILDMYIK 1154

Query: 233  AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK--PD 284
             G +  A  ++ N     D   W  ++  C    N   A R+  ++ + +  PD
Sbjct: 1155 CGDMVNA-GIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPD 1207



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 11/222 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK  HA+++  G  G+  + ++L+ MY KCG +  + +VFD   +++ V+ +A+L  Y  
Sbjct: 640 GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 699

Query: 65  T-----GDFESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           +     G+ +  + +FR     +      +   VL+ C     L   + VH   I+    
Sbjct: 700 SVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLE 759

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV +  ALV++Y+KCG +  A  +F  M  R+++ WN M+ G+ Q G  +EA ++F + 
Sbjct: 760 WDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF 819

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
              G +PD  S   +L+  S +   D G K  A   + Y  K
Sbjct: 820 HRSGLRPDEFSVQLILNGVSEVNW-DEG-KWLADQVQAYAAK 859



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 15/180 (8%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +LR       L LGK  H + +      D  + + L+ +Y+KCG +  A Q+F   P R+
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 149 LITWNSMISGFA-----QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           L+TWN+++  +A      +G  +E L +F  +         ++   VL  C + G +   
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCL--- 743

Query: 204 RKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
               A     Y IK  +E        +V++  + G + +A  L +    R D  LW ++L
Sbjct: 744 --WAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER-DVVLWNMML 800


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 133/335 (39%), Positives = 205/335 (61%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +HA  I +G   ++ V ++L+ MY KCG +  +  +FD ML K  VS +A++ G
Sbjct: 274 LFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAG 333

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + GD +  + +F  ME +    DL +   ++  C    AL LGK +   Y   +G KD
Sbjct: 334 YAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWID-TYATANGLKD 392

Query: 118 -VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            +++ +AL+D+YAKCG +D A ++F  MP ++L++W ++I+G A NG  +EAL +F  M 
Sbjct: 393 NLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMV 452

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E G KP+H++F+ VL AC+H G +++G + F  MTK Y+I P ++HY+CM DLLGR G L
Sbjct: 453 ELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRL 512

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA   I+N   + D  +W VLL AC   +N  + E VA  + EL+P   + YV + N+Y
Sbjct: 513 KEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQMANIY 572

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
            + G+W+    IRT+MK +   K PGKS ++ N K
Sbjct: 573 ASAGKWDRVAAIRTMMKCNKAMKSPGKSLVQVNGK 607



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 143/297 (48%), Gaps = 11/297 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALL 59
           LK  + +H+  I +G+  +V V ++ +  Y KCG    +  VFD + K  K  VS ++++
Sbjct: 171 LKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMI 230

Query: 60  QGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY         +  F++M       DL +   +L +C     L  GK +H   I+    
Sbjct: 231 AGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCD 290

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D+ + + L+ +Y+KCG +  A  +F  M  +  ++W +MI+G+A+ G  +EA+ +F  M
Sbjct: 291 SDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAM 350

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G KPD V+ I ++S C   G ++ G K   +      +K  +   N ++D+  + G 
Sbjct: 351 EAVGEKPDLVTIISLMSGCGQTGALELG-KWIDTYATANGLKDNLMVCNALIDVYAKCGS 409

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
           ++ A  L      +   S W  L+  C        A  +  +++E  LKP+ H++++
Sbjct: 410 MDNARELFYTMPEKSLVS-WTTLIAGCALNGEFKEALGLFFQMVELGLKPN-HITFL 464



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 19/238 (7%)

Query: 51  NSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVH 106
           NS  + ++ QGY         + +FR+M++  L     +F  V +AC+ L  L+  + VH
Sbjct: 23  NSSITESVNQGYAH-----KALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVH 77

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
              ++     D+ +++++VD+Y KC  + FA+ +F +MP R++ +WNSMI GFAQ G  +
Sbjct: 78  THVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVD 137

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH---- 222
             + +F +M   G + D V+ IG+    +H  L  +  K   S+   + IK  I+     
Sbjct: 138 RVVSLFCEMGIEGIRADSVTVIGL----THSALSLKDLKMLESI-HSFGIKIGIDTDVSV 192

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSL-WEVLLGACTTFRNAHVAERVAKKIM 279
            N  +    + G    AET+ +  D    + + W  ++     F     A    KK++
Sbjct: 193 SNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKML 250



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 124/251 (49%), Gaps = 7/251 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            LK  + VH  V+      ++ V++S+VDMY KC  +  ++ +F +M K++  S ++++ 
Sbjct: 69  NLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMIL 128

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIV--LRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+ Q G  + V+ +F EM  E I   S  ++    +   L  L++ + +H   I+     
Sbjct: 129 GFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDT 188

Query: 117 DVIIESALVDLYAKCGCVDFAHQIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
           DV + +  +  YAKCG    A  +F  +   ++  ++WNSMI+G+A   +  +A+  F  
Sbjct: 189 DVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKK 248

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M  GG + D  + + +LS+C    ++  G+   A    +      I+  N ++ +  + G
Sbjct: 249 MLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGI-QVGCDSDIQVINTLISMYSKCG 307

Query: 235 LLEEAETLIEN 245
            +  A  L +N
Sbjct: 308 DIGSARYLFDN 318


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 209/366 (57%), Gaps = 36/366 (9%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           + G+++HA  +     G+ VV+SSLVDMY KCG  D+  +VFD M  KNSV  +AL+ GY
Sbjct: 122 RLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGY 181

Query: 63  CQTGDFESVIRIFREMEEIDLFSF------------------------------------ 86
              G  E  +++FR M   +LF++                                    
Sbjct: 182 ASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVL 241

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            IV+   A LAA  LG+++H   +R     ++I+ +AL+D+Y+KC  +  A ++F  +  
Sbjct: 242 SIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITF 301

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R++I+W +M+ G AQ+GR EEAL ++D M   G KP+ V+F+G++ ACSH GL+ +GR+ 
Sbjct: 302 RDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQL 361

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SM  EY I P+++HY C +DLL R+G L EAE L+       D + W  LL ACT ++
Sbjct: 362 FESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYK 421

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           +A +  R++ K++EL+P    +Y+LL NVY   G+W+   K+R  M    ++K PG SWI
Sbjct: 422 DAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWI 481

Query: 327 EANSKL 332
           EA  + 
Sbjct: 482 EAGREF 487



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 5/174 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +HA+++  GL  +    ++LV  Y K  L+ ++  +FD+  +++    S+LL     +  
Sbjct: 25  MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSAS 84

Query: 68  FESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
            E  + I R M   D      F    V    A L + RLG+++H  ++      D +++S
Sbjct: 85  PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKS 144

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +LVD+Y KCG  D   ++F  M  +N + W +++SG+A NGR EEAL++F  M 
Sbjct: 145 SLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMP 198


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 209/366 (57%), Gaps = 36/366 (9%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           + G+++HA  +     G+ VV+SSLVDMY KCG  D+  +VFD M  KNSV  +AL+ GY
Sbjct: 204 RLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGY 263

Query: 63  CQTGDFESVIRIFREMEEIDLFSF------------------------------------ 86
              G  E  +++FR M   +LF++                                    
Sbjct: 264 ASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVL 323

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            IV+   A LAA  LG+++H   +R     ++I+ +AL+D+Y+KC  +  A ++F  +  
Sbjct: 324 SIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITF 383

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R++I+W +M+ G AQ+GR EEAL ++D M   G KP+ V+F+G++ ACSH GL+ +GR+ 
Sbjct: 384 RDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQL 443

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SM  EY I P+++HY C +DLL R+G L EAE L+       D + W  LL ACT ++
Sbjct: 444 FESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYK 503

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           +A +  R++ K++EL+P    +Y+LL NVY   G+W+   K+R  M    ++K PG SWI
Sbjct: 504 DAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWI 563

Query: 327 EANSKL 332
           EA  + 
Sbjct: 564 EAGREF 569



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 5/174 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +HA+++  GL  +    ++LV  Y K  L+ ++  +FD+  +++    S+LL     +  
Sbjct: 107 MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSAS 166

Query: 68  FESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
            E  + I R M   D      F    V    A L + RLG+++H  ++      D +++S
Sbjct: 167 PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKS 226

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +LVD+Y KCG  D   ++F  M  +N + W +++SG+A NGR EEAL++F  M 
Sbjct: 227 SLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMP 280


>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Brachypodium distachyon]
          Length = 608

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 140/316 (44%), Positives = 200/316 (63%), Gaps = 5/316 (1%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80
           +V S+LV MY KCG + E+ RVFD +  K+ V+ +A++ GY Q G  +  I +F  M + 
Sbjct: 254 LVGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQE 313

Query: 81  ---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
               D  +   VL ACA + AL LG E+      R    +V + +ALVD+Y+KCG +D A
Sbjct: 314 GASPDKITLVGVLSACAAVGALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKA 373

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSH 196
            Q+F ++P +N  TWN++I G A NGRG EA+R F+ M  E G +PD ++FIGVLSAC H
Sbjct: 374 VQVFGKLPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVH 433

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            GL+  GR+ F S+T E++I PKIEHY+CMVDLL RAG LEEA   +E    + D+ +  
Sbjct: 434 AGLLKDGRRWFNSLTSEFQIIPKIEHYSCMVDLLARAGHLEEAWDFVEKIPGKADAVMLG 493

Query: 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
            LL AC   +N  V+ERV  +IM+L+P    +YV+   +Y +  R +D+ K+R LM+  G
Sbjct: 494 ALLAACRKCKNVEVSERVINRIMQLEPSNSWNYVVSSKIYASSDRLDDSAKMRGLMRERG 553

Query: 317 VKKMPGKSWIEANSKL 332
           V K+PG SW+E + K+
Sbjct: 554 VSKIPGCSWVEVSGKV 569



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 153/291 (52%), Gaps = 16/291 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            +  HA +  LGL  +     SLV MY   G    + RVFD + +++ VS +A+++ Y +
Sbjct: 135 ARSAHALLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYER 194

Query: 65  TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DV 118
            G    V R+FR+M +      +  +  +VL AC     L LG+ +  +++R +  +   
Sbjct: 195 AGMAADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLE-EWVRSAEIEVGS 253

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ SALV +Y KCG +  A ++F  +  ++++ WN+MI+G+AQNG  +EA+ +F  M + 
Sbjct: 254 LVGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQE 313

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRK--HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           G  PD ++ +GVLSAC+ +G ++ G +   +AS    Y     +     +VD+  + G L
Sbjct: 314 GASPDKITLVGVLSACAAVGALELGTELDAYASHRGLYG---NVYVGTALVDMYSKCGDL 370

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAER---VAKKIMELKPD 284
           ++A  +     C+++++ W  L+         H A R   V +    L+PD
Sbjct: 371 DKAVQVFGKLPCKNEAT-WNALICGLAFNGRGHEAIRQFEVMRNEEGLRPD 420



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 14/154 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G E+ A     GL GNV V ++LVDMY KCG +D++ +VF K+  KN  + +AL+ G
Sbjct: 335 LELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATWNALICG 394

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
               G     IR F  M        D  +F  VL AC     L+ G+    ++      +
Sbjct: 395 LAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLLKDGR----RWFNSLTSE 450

Query: 117 DVIIE-----SALVDLYAKCGCVDFAHQIFLQMP 145
             II      S +VDL A+ G ++ A     ++P
Sbjct: 451 FQIIPKIEHYSCMVDLLARAGHLEEAWDFVEKIP 484


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 130/339 (38%), Positives = 212/339 (62%), Gaps = 8/339 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K GK++HA+V   G   + V+ + LV++Y  C  +  +  +FD++ K N    + L++G
Sbjct: 91  IKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRG 150

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G +E+ ++++ +M +     D F+F  VL+ACA L+A+  G+E+H   ++    KD
Sbjct: 151 YAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKD 210

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRN---LITWNSMISGFAQNGRGEEALRIFDD 174
           V + +AL+D+YAKCGCV  A ++F ++ VR+   +++WN+MI+G+A +G   EAL +F++
Sbjct: 211 VFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEE 270

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M     KPDH++F+GVLSACSH GL++ G   F +M ++Y+I P ++HY CMVDLLG +G
Sbjct: 271 MNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSG 329

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L+EA  LI       DS +W  LL +C    N  + E   ++++EL+PD   +YV+L N
Sbjct: 330 RLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSN 389

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +Y   G+W    K+R LM    +KK    SWIE  +K++
Sbjct: 390 IYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVH 428



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 69/121 (57%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           ++  +L++C    A++ GK++H Q        D +I + LV+LY  C  +  A  +F ++
Sbjct: 77  NYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRI 136

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P  N+  WN +I G+A NG  E A++++  M + G  PD+ +F  VL AC+ +  I+ GR
Sbjct: 137 PKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGR 196

Query: 205 K 205
           +
Sbjct: 197 E 197


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 137/332 (41%), Positives = 201/332 (60%), Gaps = 4/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+HA ++  GL     V S+++DMY KCG +D ++++F +M +K++V  +A++  
Sbjct: 291 LNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITN 350

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  +  I +FR+M       D  S    L ACA L AL  GK +H   I+ +   +
Sbjct: 351 CSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSE 410

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V  ESAL+D+Y KCG +  A  +F  M  +N ++WNS+I+ +  +G  E +L +F  M E
Sbjct: 411 VFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLE 470

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PDHV+F+ +LSAC H G +D+G ++F  MT+EY I  ++EHY C+VDL GRAG L 
Sbjct: 471 DGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLN 530

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I+N     D  +W  LLGAC    N  +AE  ++ +++L P+    YVLL NV+ 
Sbjct: 531 EAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHA 590

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
             G+W    KIR+LMK  GV+K+PG SWIE N
Sbjct: 591 DAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVN 622



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 167/297 (56%), Gaps = 9/297 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LKQGKE+H  ++  G+  +V ++S+L+D+Y KC  V  + ++F +    + V  +A++ G
Sbjct: 190 LKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISG 249

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     + IFR + E     +  +   VL ACAGLA L LGKE+H   ++    + 
Sbjct: 250 YVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDER 309

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SA++D+YAKCG +D A+QIF +MP ++ + WN++I+  +QNG+ +EA+ +F  M  
Sbjct: 310 RHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGR 369

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G   D VS    LSAC+++  +  G+   + M K      ++   + ++D+ G+ G L 
Sbjct: 370 EGLSYDCVSISAALSACANLPALHHGKAIHSFMIKG-AFDSEVFAESALIDMYGKCGNLS 428

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLL 292
            A  + +    +++ S W  ++ A  +  +  V+  +  K++E  ++PD H++++ +
Sbjct: 429 VARCVFDMMREKNEVS-WNSIIAAYGSHGHLEVSLALFHKMLEDGIQPD-HVTFLTI 483



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 108/195 (55%), Gaps = 4/195 (2%)

Query: 15  LGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRI 74
           +G   +  V SSL+ +Y + G ++++ R+FDKM  K+ V  + +L G+ + G+  S +++
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 75  FREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
           F +M     + +  +F  VL  CA  A    G ++H   I      D ++ +ALV +Y+K
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
            G +  A ++F  MP  N++TWN MI+GF QNG  +EA  +F +M   G  PD ++F   
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 191 LSACSHMGLIDRGRK 205
           L + +    + +G++
Sbjct: 181 LPSVTESASLKQGKE 195



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 135/263 (51%), Gaps = 6/263 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H  VI+ G   + +V ++LV MY K G + ++ ++F+ M   N V+ + ++ G+ Q
Sbjct: 92  GNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQ 151

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +    +F EM       D  +F   L +    A+L+ GKE+H   +R     DV +
Sbjct: 152 NGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFL 211

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           +SAL+D+Y KC  V  A +IF Q    +++   ++ISG+  NG   +AL IF  + E   
Sbjct: 212 KSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKM 271

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+ V+   VL AC+ +  ++ G++  A++ K + +  +    + ++D+  + G L+ A 
Sbjct: 272 SPNAVTLASVLPACAGLATLNLGKELHANILK-HGLDERRHVGSAIMDMYAKCGRLDLAY 330

Query: 241 TLIENADCRHDSSLWEVLLGACT 263
            +        D+  W  ++  C+
Sbjct: 331 QIFRRMP-EKDAVCWNAIITNCS 352



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 3/130 (2%)

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + S+L+ LYA+ GC++ A ++F +MP ++ + WN M++GF + G    A+++F+DM 
Sbjct: 6   DEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMR 65

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              TKP+ ++F  VLS C+   L + G + H   ++  +   P +   N +V +  + G 
Sbjct: 66  NCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVA--NALVAMYSKFGQ 123

Query: 236 LEEAETLIEN 245
           L +A  L   
Sbjct: 124 LSDALKLFNT 133


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 206/333 (61%), Gaps = 4/333 (1%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L +GK+V A ++  G   +  V ++L+  Y K G + ++ +VFDKM  ++ +S + ++ G
Sbjct: 704  LDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAG 763

Query: 62   YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            Y Q G   + ++   +M+E    ++ FSF  +L AC+  +AL  GK VH + ++R    D
Sbjct: 764  YAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGD 823

Query: 118  VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            V + +AL+ +YAKCG ++ A ++F     +N++TWN+MI+ +AQ+G   +AL  F+ M +
Sbjct: 824  VRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDK 883

Query: 178  GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             G KPD  +F  +LSAC+H GL+  G + F+S+  ++ + P IEHY C+V LLGRAG  +
Sbjct: 884  EGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQ 943

Query: 238  EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            EAETLI       D+++WE LLGAC    N  +AE  A   ++L       YVLL NVY 
Sbjct: 944  EAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYA 1003

Query: 298  AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
            A GRW+D  KIR +M+  G++K PG+SWIE ++
Sbjct: 1004 AAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDN 1036



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 144/250 (57%), Gaps = 9/250 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H  +I  GL  +V + ++L++MY +CG + +++ VF  +  +N +S +A++ G
Sbjct: 603 LELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGG 662

Query: 62  YCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           +   G+      +F +M+  D F     +F  +L+AC   A L  GK+V   +I  SG +
Sbjct: 663 FADQGEDRKAFELFWQMQN-DGFKPVKSTFSSILKACMSSACLDEGKKV-IAHILNSGYE 720

Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D  + +AL+  Y+K G +  A ++F +MP R++++WN MI+G+AQNG G  AL+    M
Sbjct: 721 LDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQM 780

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E G   +  SF+ +L+ACS    ++ G++  A + K  +++  +     ++ +  + G 
Sbjct: 781 QEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKR-KMQGDVRVGAALISMYAKCGS 839

Query: 236 LEEAETLIEN 245
           LEEA+ + +N
Sbjct: 840 LEEAQEVFDN 849



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 136/261 (52%), Gaps = 8/261 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H  ++  G+  N  + ++L++MY +CG + E+  VF+    ++ +S ++++ G+ Q
Sbjct: 505 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQ 564

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G +E+  ++F EM+    E D  +F  VL  C    AL LG+++H   I      DV +
Sbjct: 565 HGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNL 624

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+++Y +CG +  A+++F  +  RN+++W +MI GFA  G   +A  +F  M   G 
Sbjct: 625 GNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGF 684

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFAS-MTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           KP   +F  +L AC     +D G+K  A  +   Y +   +   N ++    ++G + +A
Sbjct: 685 KPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVG--NALISAYSKSGSMTDA 742

Query: 240 ETLIENADCRHDSSLWEVLLG 260
             + +    R D   W  ++ 
Sbjct: 743 RKVFDKMPNR-DIMSWNKMIA 762



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 148/264 (56%), Gaps = 8/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H+ +  +G   +V + +SL+ MY +CG +  +  +F+ M K++ +S +A++ G
Sbjct: 401 LGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAG 460

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y +  D    ++++++M+   +     +F  +L AC   +A   GK +H + I RSG K 
Sbjct: 461 YARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIH-EDILRSGIKS 519

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + +AL+++Y +CG +  A  +F     R++I+WNSMI+G AQ+G  E A ++F +M 
Sbjct: 520 NGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMK 579

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +PD ++F  VL  C +   ++ GR+    +  E  ++  +   N ++++  R G L
Sbjct: 580 KEGLEPDKITFASVLVGCKNPEALELGRQ-IHMLIIESGLQLDVNLGNALINMYIRCGSL 638

Query: 237 EEAETLIENADCRHDSSLWEVLLG 260
           ++A  +  +   R+  S W  ++G
Sbjct: 639 QDAYEVFHSLRHRNVMS-WTAMIG 661



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 120/208 (57%), Gaps = 4/208 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L + K +HA+++  G+  ++ + + L++MY KC  V ++H+VF KM +++ +S ++L+  
Sbjct: 98  LAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISC 157

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +   ++F EM+        I    +L AC   A L  GK++H + I     +D
Sbjct: 158 YAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRD 217

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             ++++L+++Y KC  +  A Q+F  +  R+++++N+M+  +AQ    EE + +F  M+ 
Sbjct: 218 PRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSS 277

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G  PD V++I +L A +   ++D G++
Sbjct: 278 EGIPPDKVTYINLLDAFTTPSMLDEGKR 305



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 133/263 (50%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK +H   +  GL  ++ V ++L  M+ +CG V  + +  +    ++ V  +AL+  
Sbjct: 300 LDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAA 359

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G +E     + +M      ++  ++  VL AC+   AL  G+ +H          D
Sbjct: 360 LAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSD 419

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I ++L+ +YA+CG +  A ++F  MP R+LI+WN++I+G+A+     EA++++  M  
Sbjct: 420 VQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQS 479

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP  V+F+ +LSAC++      G+     + +   IK      N ++++  R G + 
Sbjct: 480 EGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSIM 538

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           EA+ + E    R D   W  ++ 
Sbjct: 539 EAQNVFEGTRAR-DIISWNSMIA 560



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 100/182 (54%), Gaps = 4/182 (2%)

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E +  ++  +++ C    +L   K +H Q +      D+ + + L+++Y KC  V  AHQ
Sbjct: 79  ETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQ 138

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +FL+MP R++I+WNS+IS +AQ G  ++A ++F++M   G  P  +++I +L+AC     
Sbjct: 139 VFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAE 198

Query: 200 IDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           ++ G+K H   +   Y+  P+++  N ++++ G+   L  A  +      R D   +  +
Sbjct: 199 LEYGKKIHSKIIEAGYQRDPRVQ--NSLLNMYGKCEDLPSARQVFSGI-YRRDVVSYNTM 255

Query: 259 LG 260
           LG
Sbjct: 256 LG 257


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 125/335 (37%), Positives = 209/335 (62%), Gaps = 4/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K  K++H   I  G+  +  V +SL+D YGKC  +DE+ ++F++   ++ V+ ++++  
Sbjct: 401 IKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITA 460

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q GD E  ++++ +M++ D+    F    +L ACA L+A   GK++H   I+     D
Sbjct: 461 YSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCD 520

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +   ++LV++YAKCG ++ A + F ++P R +++W++MI G+AQ+G G+EALR+F+ M  
Sbjct: 521 IFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLR 580

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+H++ + VL AC+H GL++ G+++F  M   + IKP  EHY CM+DLLGR+G L 
Sbjct: 581 DGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLN 640

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  L+ +     D  +W  LLGA    +N  + ++ AK + +L+P+   ++VLL N+Y 
Sbjct: 641 EAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYA 700

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           + G W +  K+R  MK S VKK PG SWIE   K+
Sbjct: 701 SAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKV 735



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 156/291 (53%), Gaps = 7/291 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+ +I +    ++     LVDMY KC ++D++ R +D M KK+ ++ +AL+ GY Q
Sbjct: 303 GRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQ 362

Query: 65  TGDFESVIRIFREM--EEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD    + +F +M  E+ID    +   VL++ A L A+++ K++H   I+     D  +
Sbjct: 363 CGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYV 422

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L+D Y KC  +D A +IF +    +L+ + SMI+ ++Q G GEEAL+++  M +   
Sbjct: 423 INSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADI 482

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD      +L+AC+++   ++G++      K +     I   N +V++  + G +E+A+
Sbjct: 483 KPDPFICSSLLNACANLSAYEQGKQLHVHAIK-FGFMCDIFASNSLVNMYAKCGSIEDAD 541

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM-ELKPDCHLSYV 290
                   R   S W  ++G      +   A R+  +++ +  P  H++ V
Sbjct: 542 RAFSEIPNRGIVS-WSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLV 591



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH   +  G   +  V ++LV MY KCGL+D+S R+F  ++++N VS +AL   
Sbjct: 98  LNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSC 157

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q+      + +F+EM    +    FS  I+L ACAGL    LG+++H   ++     D
Sbjct: 158 YVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLD 217

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               +ALVD+Y+K G ++ A  +F  +   ++++WN++I+G   +   + AL + D+M  
Sbjct: 218 QFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKG 277

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            GT+P+  +    L AC+ MG  + GR+  +S+ K
Sbjct: 278 SGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIK 312



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 137/264 (51%), Gaps = 12/264 (4%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+HA +I  G   +  + + LV +Y KC     + ++ D+  + + VS S+LL GY Q G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 67  DFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             E  + +F EM     + + F+F  VL+AC+    L +G++VH   +      D  + +
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            LV +YAKCG +D + ++F  +  RN+++WN++ S + Q+    EA+ +F +M   G  P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAE 240
           +  S   +L+AC+ +   D GRK    M K   +   ++ +  N +VD+  +AG +E A 
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLK---MGLDLDQFSANALVDMYSKAGEIEGAV 238

Query: 241 TLIENADCRH-DSSLWEVLLGACT 263
            + +  D  H D   W  ++  C 
Sbjct: 239 AVFQ--DIAHPDVVSWNAIIAGCV 260



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 145/295 (49%), Gaps = 8/295 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H  ++ +GL  +    ++LVDMY K G ++ +  VF  +   + VS +A++ G   
Sbjct: 202 GRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVL 261

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               +  + +  EM+      ++F+    L+ACA +    LG+++H   I+     D+  
Sbjct: 262 HDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFA 321

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
              LVD+Y+KC  +D A + +  MP +++I WN++ISG++Q G   +A+ +F  M     
Sbjct: 322 AVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDI 381

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             +  +   VL + + +  I +  K   +++ +  I       N ++D  G+   ++EA 
Sbjct: 382 DFNQTTLSTVLKSVASLQAI-KVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEAS 440

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCHLSYVLLD 293
            + E      D   +  ++ A + + +   A ++  ++   ++KPD  +   LL+
Sbjct: 441 KIFEERTWE-DLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLN 494


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  267 bits (682), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 212/336 (63%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QG ++HA+V   G   ++ + ++LV++Y +CG  +E+  +F ++  K+ ++ + L+ G
Sbjct: 463 MRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISG 522

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+  +E  + +F +M +     ++F+F   + A A LA ++ GK+VH + ++     +
Sbjct: 523 FGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSE 582

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ LY KCG ++ A  IF +M +RN ++WN++I+  +Q+GRG EAL +FD M +
Sbjct: 583 TEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQ 642

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+ V+FIGVL+ACSH+GL++ G  +F SM+  Y + P  +HY C+VD+LGRAG L+
Sbjct: 643 EGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLD 702

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A   ++      ++ +W  LL AC   +N  + E  AK ++EL+P    SYVLL N Y 
Sbjct: 703 RARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYA 762

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W +  ++R +MK  G++K PG+SWIE  + ++
Sbjct: 763 VTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVH 798



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 149/267 (55%), Gaps = 6/267 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +++ G+++H+  I  G   ++ V   L+DMY K   +D++ ++ + + K++ VS ++++ 
Sbjct: 361 QIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIA 420

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q    E  +  F+EM++  ++   I L     ACAG+ A+R G ++H +        
Sbjct: 421 GYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAA 480

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+ I + LV+LYA+CG  + A  +F ++  ++ ITWN +ISGF Q+   E+AL +F  M+
Sbjct: 481 DISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMS 540

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G K +  +FI  +SA +++  I +G++      K      + E  N ++ L G+ G +
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTS-ETEVANALISLYGKCGSI 599

Query: 237 EEAETLIENADCRHDSSLWEVLLGACT 263
           E+A+ +      R++ S W  ++ +C+
Sbjct: 600 EDAKMIFSEMSLRNEVS-WNTIITSCS 625



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 138/263 (52%), Gaps = 8/263 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++H+ ++  G+  + + E SL+D+Y KCG ++ +H +F+   + N V  + +L  
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  D      IF +M+   +    F++  +LR C     + LG+++H   I+     D
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESD 380

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + +   L+D+Y+K  C+D A +I   +  R++++W SMI+G+ Q+   EEAL  F +M +
Sbjct: 381 MYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQD 440

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G  PD++      SAC+ +  + +G + H       Y     I  +N +V+L  R G  
Sbjct: 441 CGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY--AADISIWNTLVNLYARCGRS 498

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           EEA +L    D + D   W  L+
Sbjct: 499 EEAFSLFREIDHK-DEITWNGLI 520



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 138/259 (53%), Gaps = 6/259 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+HA  +  GL  + ++ + L+D+Y K GLV ++ +VF ++  ++ VS  A+L GY Q G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             +   R++ +M    +    +    VL AC        G+ +H Q  +++ C +  + +
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           AL+ LY   G    A ++F  M   + +T+N++ISG AQ G GE AL+IFD+M   G +P
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRP 243

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           D V+   +L+AC+ +G + +G++  + + K       I     ++DL  + G +E A  +
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE-GSLLDLYVKCGDIETAHDI 302

Query: 243 IENADCRHDSSLWEVLLGA 261
               D R +  LW ++L A
Sbjct: 303 FNLGD-RTNVVLWNLMLVA 320



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             QG+ +HA+V     C    V ++L+ +Y   G    + RVF  ML  + V+ + L+ G
Sbjct: 160 FAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISG 219

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  E  ++IF EM+      D  +   +L ACA +  L+ GK++H   ++     D
Sbjct: 220 HAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFD 279

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            I E +L+DLY KCG ++ AH IF      N++ WN M+  + Q     ++  IF  M  
Sbjct: 280 YITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQA 339

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+  ++  +L  C+  G I+ G +   S++ +   +  +     ++D+  +   L+
Sbjct: 340 TGIHPNKFTYPCILRTCTCTGQIELGEQ-IHSLSIKNGFESDMYVSGVLIDMYSKYRCLD 398

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +A  ++E  + R D   W  ++ 
Sbjct: 399 KARKILEMLEKR-DVVSWTSMIA 420


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  267 bits (682), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 134/328 (40%), Positives = 209/328 (63%), Gaps = 8/328 (2%)

Query: 7    EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSALLQGYCQT 65
            ++HA V+   L  +  + ++L+  YGKCG ++E  ++F +M + ++ VS ++++ GY   
Sbjct: 1084 QIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHN 1143

Query: 66   ----GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
                   + V  + ++ + +D F+F  VL ACA +A L  G EVH   IR     DV++ 
Sbjct: 1144 ELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVG 1203

Query: 122  SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
            SALVD+Y+KCG +D+A + F  MP+RN+ +WNSMISG+A++G GE+AL++F  M   G  
Sbjct: 1204 SALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQP 1263

Query: 182  PDHVS-FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            PDHV+  +GVLSACSH+G ++ G +HF SM++ YR+ P++EH++CMVDLLGRAG L+E  
Sbjct: 1264 PDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVG 1323

Query: 241  TLIENADCRHDSSLWEVLLGAC--TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
              I +   + +  +W  +LGAC     RN  +  R A+ ++EL+P   ++YVLL N+Y +
Sbjct: 1324 DFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYAS 1383

Query: 299  VGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
              +W D  K R  MK + VKK  G SW+
Sbjct: 1384 GEKWEDVAKARXAMKEAAVKKEAGCSWV 1411



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 7/263 (2%)

Query: 3    KQGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            ++G+EVHA VI  GL  N V + + LV+MY K G + ++  VF+ M++K+SVS ++L+ G
Sbjct: 876  RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISG 935

Query: 62   Y----CQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                 C     ES +R+ R       F+    L +CA L  + LG+++HC  ++     D
Sbjct: 936  LDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTD 995

Query: 118  VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN-GRGEEALRIFDDMT 176
            V + +AL+ LYA+ GC     ++F  MP  + ++WNS+I   + +     +A++ F +M 
Sbjct: 996  VSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMM 1055

Query: 177  EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             GG     V+FI +LSA S + L +   +  A + K Y +       N ++   G+ G +
Sbjct: 1056 RGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLK-YCLSDDTAIGNALLSCYGKCGEM 1114

Query: 237  EEAETLIENADCRHDSSLWEVLL 259
             E E +        D   W  ++
Sbjct: 1115 NECEKIFARMSETRDEVSWNSMI 1137



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 149/303 (49%), Gaps = 13/303 (4%)

Query: 6    KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
            +++ A+V   G   ++ V S+LV  + + GL D++  +F++M  +N VS + L+ G  + 
Sbjct: 775  EQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQ 834

Query: 66   GDFESVIRIFREMEE---IDLFSFGIVLRACAGLAAL----RLGKEVHCQYIRRSGCKD- 117
               E+  ++F EM++   I+  S+ ++L A +  + L    R G+EVH   IR +G  D 
Sbjct: 835  KQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIR-TGLNDN 893

Query: 118  -VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             V I + LV++YAK G +  A  +F  M  ++ ++WNS+ISG  QN   E+A   F  M 
Sbjct: 894  KVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMR 953

Query: 177  EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              G+ P + + I  LS+C+ +G I  G +      K   +   +   N ++ L    G  
Sbjct: 954  RTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLK-LGLDTDVSVSNALLALYAETGCF 1012

Query: 237  EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
             E   +       +D   W  ++GA +    A V++ V   +  ++    LS V   N+ 
Sbjct: 1013 TECLKVFSLMP-EYDQVSWNSVIGALSD-SEASVSQAVKYFLEMMRGGWGLSRVTFINIL 1070

Query: 297  RAV 299
             AV
Sbjct: 1071 SAV 1073



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 160/332 (48%), Gaps = 28/332 (8%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           ++ +E+H + I  G  GN+ + ++L+++Y + G +  + ++FD+M  +N V+ + L+ GY
Sbjct: 561 EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 620

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRAC--AGLAALRLGKEVHCQYIRRSGCK 116
            Q G  +     FR+M         ++FG  LRAC  +G +  +LG ++H    +     
Sbjct: 621 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGS 680

Query: 117 DVIIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           DV++ + L+ +Y  C    + A  +F ++ +RN I+WNS+IS +++ G    A  +F  M
Sbjct: 681 DVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSM 740

Query: 176 TEGGT----KPDHVSFIGVLS-ACSHMGLIDRGRKHFASMTKEYRIKPKIEHY---NCMV 227
            + G     KP+  +F  +++ ACS    +D G      M         ++     + +V
Sbjct: 741 QKEGLGFSFKPNEYTFGSLITAACSS---VDFGLCVLEQMLARVEKSGFLQDLYVGSALV 797

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287
               R GL ++A+ + E    R+  S+  +++G     +    A +V  ++ +L      
Sbjct: 798 SGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQ-KQGEAAAKVFHEMKDLVGINSD 856

Query: 288 SYVLLDNVY---------RAVGRWNDAFKIRT 310
           SYV+L + +         R  GR   A  IRT
Sbjct: 857 SYVVLLSAFSEFSVLEEGRRKGREVHAHVIRT 888



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 144/294 (48%), Gaps = 9/294 (3%)

Query: 5    GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            G+++H   + LGL  +V V ++L+ +Y + G   E  +VF  M + + VS ++++     
Sbjct: 980  GEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSD 1039

Query: 65   T-GDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            +       ++ F EM      +   +F  +L A + L+   +  ++H   ++     D  
Sbjct: 1040 SEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTA 1099

Query: 120  IESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            I +AL+  Y KCG ++   +IF +M   R+ ++WNSMISG+  N    +A+ +   M + 
Sbjct: 1100 IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQK 1159

Query: 179  GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            G + D  +F  VLSAC+ +  ++RG +  A   +   ++  +   + +VD+  + G ++ 
Sbjct: 1160 GQRLDSFTFATVLSACASVATLERGMEVHACGIRAC-MESDVVVGSALVDMYSKCGRIDY 1218

Query: 239  AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM-ELKPDCHLSYVL 291
            A    E    R+  S W  ++       +   A ++  ++M + +P  H++ +L
Sbjct: 1219 ASRFFELMPLRNVYS-WNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLL 1271



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 10/178 (5%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L++G EVHA  I   +  +VVV S+LVDMY KCG +D + R F+ M  +N  S ++++ G
Sbjct: 1181 LERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISG 1240

Query: 62   YCQTGDFESVIRIFREM----EEIDLFSFGI-VLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y + G  E  +++F  M    +  D  +  + VL AC+ +  +  G E H + +      
Sbjct: 1241 YARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFE-HFKSMSEVYRL 1299

Query: 117  DVIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQ-NGRGEEALR 170
               +E  S +VDL  + G +D        MP++ N++ W +++    + NGR  E  R
Sbjct: 1300 SPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGR 1357


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  267 bits (682), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 211/336 (62%), Gaps = 6/336 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           ++GKE+H  +I  GL  + VV ++L+D+YGKCG ++E+  +FD+M  K+ VS + ++   
Sbjct: 213 RRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRC 272

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            + G  +    +FR++       + ++F  VL ACA LAA ++GKEVH  Y+ R G    
Sbjct: 273 FEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVH-GYMTRVGYDPF 331

Query: 119 -IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               SALV +Y+KCG  + A ++F QMP  +L++W S+I G+AQNG+ + AL+ F+ +  
Sbjct: 332 SFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLR 391

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GTKPD ++F+GVLSAC+H GL+D G ++F S+ +++ +    +HY C++DLL R+G  +
Sbjct: 392 SGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFK 451

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE +I+N   + D  LW  LLG C    N  +AER AK + EL+P+   +Y+ L N+Y 
Sbjct: 452 EAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYA 511

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G W +  K+R  M   G+ K PGKSWIE   +++
Sbjct: 512 NAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVH 547



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 40/296 (13%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +L+ GK VHA          +V+ + L+ MY KCG + ++  +FD++ +K+  S + ++ 
Sbjct: 78  KLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMIS 137

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAG----LAAL----------------- 99
           GY   G  E   ++F EM   D FS+  V+         + AL                 
Sbjct: 138 GYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMF 197

Query: 100 ---------------RLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQ 143
                          R GKE+H  Y+ RSG + D ++ +AL+DLY KCG ++ A  IF Q
Sbjct: 198 TLSSALAAAAAISSLRRGKEIH-GYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQ 256

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           M  +++++W +MI    ++GR +E   +F D+   G +P+  +F GVL+AC+ +     G
Sbjct: 257 MADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMG 316

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           ++    MT+     P     + +V +  + G  E A  +  N   R D   W  L+
Sbjct: 317 KEVHGYMTR-VGYDPFSFAASALVHVYSKCGNTETARRVF-NQMPRPDLVSWTSLI 370



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 58  LLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +++ +CQ    +  +     + +     +  ++ AC     L LGK VH      +    
Sbjct: 38  IIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPG 97

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           ++I + L+ +YAKCG +  A  +F ++P ++L +WN+MISG+A  GR E+A ++FD+M  
Sbjct: 98  IVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPH 157

Query: 178 GGTKPDHVSFIGVLSACSHMG 198
                D+ S+  V+S     G
Sbjct: 158 ----RDNFSWNAVISGYVSQG 174


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  267 bits (682), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 210/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+G+++HA+    G   ++  +++LV +Y +CG ++ES+  F++    ++++ +AL+ G
Sbjct: 607 LKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSG 666

Query: 62  YCQTGDFESVIRIFREM--EEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G+ E  +R+F  M  E ID   F+FG  ++A +  A ++ GK+VH    +     +
Sbjct: 667 FQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 726

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ +YAKCG +  A + FL++  +N ++WN++I+ ++++G G EAL  FD M  
Sbjct: 727 TEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH 786

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +P+HV+ +GVLSACSH+GL+D+G  +F SM  EY + PK EHY C+VD+L RAGLL 
Sbjct: 787 SNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLS 846

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A+  I+    + D+ +W  LL AC   +N  + E  A  ++EL+P+   +YVLL N+Y 
Sbjct: 847 RAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 906

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              +W+     R  MK  GVKK PG+SWIE  + ++
Sbjct: 907 VSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 942



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 139/267 (52%), Gaps = 12/267 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H+++I      N  V S L+DMY K G +D +  +  +   K+ VS + ++ G
Sbjct: 506 LELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 565

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y Q    +  +  FR+M       +E+ L +    + ACAGL AL+ G+++H Q      
Sbjct: 566 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTN---AVSACAGLQALKEGQQIHAQACVSGF 622

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D+  ++ALV LY++CG ++ ++  F Q    + I WN+++SGF Q+G  EEALR+F  
Sbjct: 623 SSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVR 682

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G   ++ +F   + A S    + +G++  A +TK      + E  N ++ +  + G
Sbjct: 683 MNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNALISMYAKCG 741

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
            + +AE        +++ S W  ++ A
Sbjct: 742 SISDAEKQFLEVSTKNEVS-WNAIINA 767



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 138/277 (49%), Gaps = 6/277 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++HA    LG   N  +E +L+++Y KC  ++ +   F +   +N V  + +L  
Sbjct: 405 LFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVA 464

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y    D  +  RIFR+M  EEI  + +++  +L+ C  L  L LG+++H Q I+ +   +
Sbjct: 465 YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLN 524

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + S L+D+YAK G +D A  I ++   +++++W +MI+G+ Q    ++AL  F  M +
Sbjct: 525 AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD 584

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + D V     +SAC+ +  +  G++  A           +   N +V L  R G +E
Sbjct: 585 RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALVTLYSRCGKIE 643

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
           E+    E  +   D+  W  L+       N   A RV
Sbjct: 644 ESYLAFEQTEA-GDNIAWNALVSGFQQSGNNEEALRV 679



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 156/304 (51%), Gaps = 20/304 (6%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++HA+++  GL  + VV + L+D+Y + G VD + RVFD +  K+  S  A++ G  + 
Sbjct: 207 EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKN 266

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
                 IR+F +M  + +    ++F  VL AC  + +L +G+++H   ++     D  + 
Sbjct: 267 ECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVC 326

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALV LY   G +  A  IF  M  R+ +T+N++I+G +Q G GE+A+ +F  M   G +
Sbjct: 327 NALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLE 386

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEEA- 239
           PD  +   ++ ACS  G + RG++  A  TK  +    KIE    +++L  +   +E A 
Sbjct: 387 PDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--GALLNLYAKCADIETAL 444

Query: 240 ----ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK--KIMELKPDCHLSYVLLD 293
               ET +EN        LW V+L A     +   + R+ +  +I E+ P+ +    +L 
Sbjct: 445 DYFLETEVENV------VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 498

Query: 294 NVYR 297
              R
Sbjct: 499 TCIR 502



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 129/271 (47%), Gaps = 12/271 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H  V+ LG   +  V ++LV +Y   G +  +  +F  M ++++V+ + L+ G
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 363

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  + +F+ M     E D  +   ++ AC+    L  G+++H    +     +
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 423

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             IE AL++LYAKC  ++ A   FL+  V N++ WN M+  +        + RIF  M  
Sbjct: 424 NKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI 483

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC--MVDLLGRAGL 235
               P+  ++  +L  C  +G ++ G +  + + K      ++  Y C  ++D+  + G 
Sbjct: 484 EEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK---TNFQLNAYVCSVLIDMYAKLGK 540

Query: 236 LEEA-ETLIENADCRHDSSLWEVLLGACTTF 265
           L+ A + LI  A    D   W  ++   T +
Sbjct: 541 LDTAWDILIRFAG--KDVVSWTTMIAGYTQY 569



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 139/292 (47%), Gaps = 9/292 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++H++++ LGL  N  +   L D Y   G +  + +VFD+M ++   + + +++ 
Sbjct: 101 LDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKE 160

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRAC-AGLAALRLGKEVHCQYIRRSGCK 116
                    V  +F  M   ++     +F  VL AC  G  A  + +++H + + +    
Sbjct: 161 LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD 220

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             ++ + L+DLY++ G VD A ++F  + +++  +W +MISG ++N    EA+R+F DM 
Sbjct: 221 STVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMY 280

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P   +F  VLSAC  +  ++ G +    +  +          N +V L    G L
Sbjct: 281 VLGIMPTPYAFSSVLSACKKIESLEIGEQ-LHGLVLKLGFSSDTYVCNALVSLYFHLGNL 339

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCH 286
             AE +  N   R D+  +  L+   +       A  + K++    L+PD +
Sbjct: 340 ISAEHIFSNMSQR-DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSN 390


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  267 bits (682), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 150/382 (39%), Positives = 219/382 (57%), Gaps = 48/382 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD---ESHRVFDKMLKKNSVSSSAL 58
           L++G++VH +V+  G C NV V +SLV++Y   G  D   ++ RVFD+++ +N VS ++L
Sbjct: 132 LREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSL 191

Query: 59  LQGYCQTGDFESVIRIFREMEEIDLFSFGIV----------------------------- 89
           L GY + GD +   RIF EM E ++ S+  +                             
Sbjct: 192 LAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQ 251

Query: 90  ------LRACAGLAALRLGKEVHCQYIRR--SGCKDVII--ESALVDLYAKCGCVDFAHQ 139
                 L ACA L  L+LG  +H     R  +G + +++   ++L+ +YA CG +D A++
Sbjct: 252 VALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYK 311

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT---KPDHVSFIGVLSACSH 196
           +F+ M  R+ I+W SMI+GFA+ G  EEAL +F  M   GT   +PD ++FIGVL ACSH
Sbjct: 312 VFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSH 371

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            G +D+GR  F  M K++ I P+IEHY CMVDLL RAG L+EA  LIE+   + + ++W 
Sbjct: 372 AGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWG 431

Query: 257 VLLGACTTFRNAHVAERVAKKI-MELKPDCHLSY-VLLDNVYRAVGRWNDAFKIRTLMKY 314
            LLG C   +NA +A  VA+K+ +ELKPD    Y VLL NVY    RW D   +R  M  
Sbjct: 432 ALLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVE 491

Query: 315 SGVKKMPGKSWIEANSKLNHDL 336
            GV+K  G+SW++ N  + HD 
Sbjct: 492 IGVRKPAGRSWVQINGVV-HDF 512



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 120/240 (50%), Gaps = 38/240 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K+ K++H ++I  G      +   L+  Y   G +  +H+VF+++   ++   + +++G
Sbjct: 31  IKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRG 90

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+     ++ ++  M E +     F++  ++  CA    LR G++VH + +    C +
Sbjct: 91  HSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTN 150

Query: 118 VIIESALVDLYA----------------------------------KCGCVDFAHQIFLQ 143
           V + ++LV+LYA                                  +CG VD A +IF +
Sbjct: 151 VFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDE 210

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP RN+++W +MI+G AQ GR ++AL +F +M   G K D V+ +  LSAC+ +G +  G
Sbjct: 211 MPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLG 270



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           F  +L+ C  +  L   K++H Q I     +   +   L+  Y   G +  AH++F ++ 
Sbjct: 21  FFSLLQTCDTIKKL---KQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIE 77

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             +   WN MI G +Q+    + + +++ M E   +P+  ++  ++  C+   L+  G +
Sbjct: 78  NPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQ 137


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  267 bits (682), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 210/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+G+++HA+    G   ++  +++LV +Y +CG ++ES+  F++    ++++ +AL+ G
Sbjct: 567 LKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSG 626

Query: 62  YCQTGDFESVIRIFREM--EEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G+ E  +R+F  M  E ID   F+FG  ++A +  A ++ GK+VH    +     +
Sbjct: 627 FQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 686

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ +YAKCG +  A + FL++  +N ++WN++I+ ++++G G EAL  FD M  
Sbjct: 687 TEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH 746

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +P+HV+ +GVLSACSH+GL+D+G  +F SM  EY + PK EHY C+VD+L RAGLL 
Sbjct: 747 SNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLS 806

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A+  I+    + D+ +W  LL AC   +N  + E  A  ++EL+P+   +YVLL N+Y 
Sbjct: 807 RAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 866

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              +W+     R  MK  GVKK PG+SWIE  + ++
Sbjct: 867 VSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 902



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 139/267 (52%), Gaps = 12/267 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H+++I      N  V S L+DMY K G +D +  +  +   K+ VS + ++ G
Sbjct: 466 LELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 525

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y Q    +  +  FR+M       +E+ L +    + ACAGL AL+ G+++H Q      
Sbjct: 526 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTN---AVSACAGLQALKEGQQIHAQACVSGF 582

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D+  ++ALV LY++CG ++ ++  F Q    + I WN+++SGF Q+G  EEALR+F  
Sbjct: 583 SSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVR 642

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G   ++ +F   + A S    + +G++  A +TK      + E  N ++ +  + G
Sbjct: 643 MNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNALISMYAKCG 701

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
            + +AE        +++ S W  ++ A
Sbjct: 702 SISDAEKQFLEVSTKNEVS-WNAIINA 727



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 138/277 (49%), Gaps = 6/277 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++HA    LG   N  +E +L+++Y KC  ++ +   F +   +N V  + +L  
Sbjct: 365 LFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVA 424

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y    D  +  RIFR+M  EEI  + +++  +L+ C  L  L LG+++H Q I+ +   +
Sbjct: 425 YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLN 484

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + S L+D+YAK G +D A  I ++   +++++W +MI+G+ Q    ++AL  F  M +
Sbjct: 485 AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD 544

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + D V     +SAC+ +  +  G++  A           +   N +V L  R G +E
Sbjct: 545 RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALVTLYSRCGKIE 603

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
           E+    E  +   D+  W  L+       N   A RV
Sbjct: 604 ESYLAFEQTEA-GDNIAWNALVSGFQQSGNNEEALRV 639



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 156/304 (51%), Gaps = 20/304 (6%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++HA+++  GL  + VV + L+D+Y + G VD + RVFD +  K+  S  A++ G  + 
Sbjct: 167 EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKN 226

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
                 IR+F +M  + +    ++F  VL AC  + +L +G+++H   ++     D  + 
Sbjct: 227 ECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVC 286

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALV LY   G +  A  IF  M  R+ +T+N++I+G +Q G GE+A+ +F  M   G +
Sbjct: 287 NALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLE 346

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEEA- 239
           PD  +   ++ ACS  G + RG++  A  TK  +    KIE    +++L  +   +E A 
Sbjct: 347 PDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--GALLNLYAKCADIETAL 404

Query: 240 ----ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK--KIMELKPDCHLSYVLLD 293
               ET +EN        LW V+L A     +   + R+ +  +I E+ P+ +    +L 
Sbjct: 405 DYFLETEVENV------VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 458

Query: 294 NVYR 297
              R
Sbjct: 459 TCIR 462



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 129/271 (47%), Gaps = 12/271 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H  V+ LG   +  V ++LV +Y   G +  +  +F  M ++++V+ + L+ G
Sbjct: 264 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 323

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  + +F+ M     E D  +   ++ AC+    L  G+++H    +     +
Sbjct: 324 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 383

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             IE AL++LYAKC  ++ A   FL+  V N++ WN M+  +        + RIF  M  
Sbjct: 384 NKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI 443

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC--MVDLLGRAGL 235
               P+  ++  +L  C  +G ++ G +  + + K      ++  Y C  ++D+  + G 
Sbjct: 444 EEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK---TNFQLNAYVCSVLIDMYAKLGK 500

Query: 236 LEEA-ETLIENADCRHDSSLWEVLLGACTTF 265
           L+ A + LI  A    D   W  ++   T +
Sbjct: 501 LDTAWDILIRFAG--KDVVSWTTMIAGYTQY 529



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 139/292 (47%), Gaps = 9/292 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++H++++ LGL  N  +   L D Y   G +  + +VFD+M ++   + + +++ 
Sbjct: 61  LDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKE 120

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRAC-AGLAALRLGKEVHCQYIRRSGCK 116
                    V  +F  M   ++     +F  VL AC  G  A  + +++H + + +    
Sbjct: 121 LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD 180

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             ++ + L+DLY++ G VD A ++F  + +++  +W +MISG ++N    EA+R+F DM 
Sbjct: 181 STVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMY 240

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P   +F  VLSAC  +  ++ G +    +  +          N +V L    G L
Sbjct: 241 VLGIMPTPYAFSSVLSACKKIESLEIGEQ-LHGLVLKLGFSSDTYVCNALVSLYFHLGNL 299

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCH 286
             AE +  N   R D+  +  L+   +       A  + K++    L+PD +
Sbjct: 300 ISAEHIFSNMSQR-DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSN 350


>gi|297597140|ref|NP_001043491.2| Os01g0600400 [Oryza sativa Japonica Group]
 gi|53791399|dbj|BAD53436.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|53793537|dbj|BAD52986.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222618803|gb|EEE54935.1| hypothetical protein OsJ_02490 [Oryza sativa Japonica Group]
 gi|255673429|dbj|BAF05405.2| Os01g0600400 [Oryza sativa Japonica Group]
          Length = 348

 Score =  267 bits (682), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 203/336 (60%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G +VHA V+  G  G+  V   L+DMY + G    +  VFD++ +++  S + ++  
Sbjct: 3   LRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMST 62

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +T + E  I  FR M    +  +  +    L  C+ LA L  G ++H  Y  +SG   
Sbjct: 63  YAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLH-SYTIKSGWNS 121

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ SALVD+Y KCG +  A  +F +    +L+ WN++I G+AQ+G G +AL  F +M +
Sbjct: 122 SVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMID 181

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD ++F+GVLSACSH GL+D GR++F  ++  Y I P +EHY CMVD+L +AG L 
Sbjct: 182 EGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLA 241

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE+LI       D+SLW+ +LGAC    N  +AER A+K+ E +PD   S +LL N+Y 
Sbjct: 242 EAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYA 301

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            + RWND  K+R+++   GVKK PG SWIE N KL+
Sbjct: 302 DLKRWNDVAKLRSMLVDRGVKKEPGCSWIEINGKLH 337


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  266 bits (681), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 135/333 (40%), Positives = 206/333 (61%), Gaps = 11/333 (3%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQG 61
           K   ++HA ++   +  +  +E++L+  YGK G ++    +F +M  +++ VS ++++ G
Sbjct: 323 KLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISG 382

Query: 62  Y------CQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           Y      C+  D   V  + +  + +D F+F  VL ACA +A L  G EVH   IR    
Sbjct: 383 YIHNELLCKAMDL--VWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLE 440

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV+I SALVD+Y+KCG +D+A + F  MPVRNL +WNSMISG+A++G G+ ALR+F  M
Sbjct: 441 SDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRM 500

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  PDH++F+GVLSACSH+GL+D G ++F SMT+ Y + P++EHY+CMVDLLGRAG 
Sbjct: 501 KLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGE 560

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACT--TFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           L++ E  I     + +  +W  +LGAC     R   +  R A+ +  + P   ++YVLL 
Sbjct: 561 LDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLS 620

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N+Y + G+W D  + R  M+ + VKK  G SW+
Sbjct: 621 NMYASGGKWEDMARTRRAMREAAVKKEAGCSWV 653



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 132/263 (50%), Gaps = 7/263 (2%)

Query: 3   KQGKEVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++G++VH   I  GL    V V + L++MY KCG +D +  VF  M+ K+SVS ++++ G
Sbjct: 119 RKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITG 178

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q   FE  ++ +  M +  L    F+    L +CA L  + LG++ H + I+     D
Sbjct: 179 LDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMD 238

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG-EEALRIFDDMT 176
           V + + L+ LYA+   +    ++F  M  R+ ++WN++I   A +G    EA+ +F +M 
Sbjct: 239 VSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMM 298

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+ V+FI +L+  S +       +  A + K Y +K      N ++   G++G +
Sbjct: 299 RAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILK-YNVKDDNAIENALLACYGKSGEM 357

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           E  E +      R D   W  ++
Sbjct: 358 ENCEEIFSRMSERRDEVSWNSMI 380



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 134/260 (51%), Gaps = 10/260 (3%)

Query: 9   HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF 68
           H  V+  G   ++ + ++L+++Y + G    + ++FD+M  +N V+ + L+ GY Q G  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 69  ESVIRIFREM--EEI--DLFSFGIVLRACA-GLAALRLGKEVHCQYIRRSGCKD--VIIE 121
           E    + +EM  E    + F+FG  +RAC   +   R G++VH  Y  R+G  D  V + 
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVH-GYAIRTGLNDAKVAVG 141

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + L+++YAKCG +D A  +F  M  ++ ++WNSMI+G  QN   E+A++ ++ M + G  
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM 201

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P + + I  LS+C+ +G I  G++      K   +   +   N ++ L      L E + 
Sbjct: 202 PSNFALISALSSCASLGCILLGQQTHGEGIK-LGLDMDVSVSNTLLALYAETSRLAECQK 260

Query: 242 LIENADCRHDSSLWEVLLGA 261
           +        D   W  ++GA
Sbjct: 261 VFSWM-LERDQVSWNTVIGA 279



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 97/194 (50%), Gaps = 7/194 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G EVHA  I   L  +VV+ S+LVDMY KCG +D + R F+ M  +N  S ++++ G
Sbjct: 424 LECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISG 483

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CK 116
           Y + G  ++ +R+F  M    +  D  +F  VL AC+ +  +  G E         G   
Sbjct: 484 YARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVP 543

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQ-NGRGEEALRIFDD 174
            V   S +VDL  + G +D       +MP++ N++ W +++    + NGR  E  R   +
Sbjct: 544 RVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAE 603

Query: 175 MTEGGTKPDHVSFI 188
           M       + V+++
Sbjct: 604 MLFNMDPQNAVNYV 617


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  266 bits (681), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 127/331 (38%), Positives = 206/331 (62%), Gaps = 5/331 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++HA+++  GL  +V V S+L+D YGKCG V  + + FD +  +N V+ +A+L  
Sbjct: 245 LQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTA 304

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G FE  + +F +ME  D     F+F ++L ACA L AL  G  +H + +       
Sbjct: 305 YLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNH 364

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +I+ +AL+++Y+K G +D ++ +F  M  R++ITWN+MI G++ +G G++AL +F DM  
Sbjct: 365 LIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMS 424

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P++V+FIGVLSAC H+ L+  G  +F  + K++ ++P +EHY CMV LLGRAGLL+
Sbjct: 425 AGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLD 484

Query: 238 EAETLIE-NADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EAE  ++     + D   W  LL AC   RN ++ +++ + ++++ P    +Y LL N++
Sbjct: 485 EAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMH 544

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
               +W+   KIR LMK   +KK PG SW++
Sbjct: 545 AKARKWDGVVKIRKLMKERNIKKEPGASWLD 575



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 133/263 (50%), Gaps = 6/263 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+K+GK+ H  ++  GL  +  V+++L+ MY +C  VD + ++ D +   +  S +++L 
Sbjct: 143 RVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILS 202

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
              ++G      ++ + M +     D  ++  VL  CA +  L+LG ++H Q ++     
Sbjct: 203 ALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVF 262

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV + S L+D Y KCG V  A + F  +  RN++ W ++++ + QNG  EE L +F  M 
Sbjct: 263 DVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKME 322

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              T+P+  +F  +L+AC+ +  +  G      +      K  +   N ++++  ++G +
Sbjct: 323 LEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMS-GFKNHLIVGNALINMYSKSGNI 381

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           + +  +  N   R D   W  ++
Sbjct: 382 DSSYNVFSNMMNR-DVITWNAMI 403



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 118/219 (53%), Gaps = 8/219 (3%)

Query: 2   LKQGKEVHAKVITLGLCG---NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           L+ GK +HA+++         ++   +SL+++Y KCG    + ++FD+ML++N VS SAL
Sbjct: 39  LRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSAL 98

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           + GY   G+   V+ +FR +  +D      + F IVL  CA    ++ GK+ H   ++  
Sbjct: 99  MMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSG 158

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
                 +++AL+ +Y++C  VD A QI   +P  ++ ++NS++S   ++G   EA ++  
Sbjct: 159 LLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLK 218

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            M +     D V+++ VL  C+ +  +  G +  A + K
Sbjct: 219 RMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLK 257



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRR---SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +L+  A   +LR GK +H Q + R   S   D+   ++L++LY+KCG    A ++F +M 
Sbjct: 29  LLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRML 88

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTE-GGTKPDHVSFIGVLSACSHMGLIDRGR 204
            RN+++W++++ G+   G   E L +F ++       P+   F  VLS C+  G +  G+
Sbjct: 89  QRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGK 148

Query: 205 K 205
           +
Sbjct: 149 Q 149


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  266 bits (681), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QGK++HA  I  G   ++ V S ++DMY KCG +  +  VF+ +   + V+ ++++ G
Sbjct: 408 LDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISG 467

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G+ +  +RI+  M +     D ++F  +++A + + AL  G+++H   I+     D
Sbjct: 468 CVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSD 527

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++LVD+YAKCG ++ A+++F +M VRN+  WN+M+ G AQ+G  EEA+ +F  M  
Sbjct: 528 PFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKS 587

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD VSFIG+LSACSH GL     ++  SM  +Y I+P+IEHY+C+VD LGRAGL++
Sbjct: 588 HGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQ 647

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+ +IE    +  +S+   LLGAC    +    +RVA ++  L+P    +YVLL N+Y 
Sbjct: 648 EADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYA 707

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A  RW+D    R +MK   VKK PG SWI+  + L+
Sbjct: 708 AANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLH 743



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 148/290 (51%), Gaps = 15/290 (5%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH   I +GL  +V V  +LV++Y KCG + ++  +FD M +++ V  + +L+GY Q G 
Sbjct: 205 VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL 264

Query: 68  FESVIRIFREMEE----IDLFSFGIVLRAC--AGLAALRLGKEVHCQYIRRSGCKDVIIE 121
            +   ++F E        D FS  ++L  C  AG   L LGK+VH   ++     DV + 
Sbjct: 265 EKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVA 324

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++LV++Y+K GC  FA ++F  M   +LI+WNSMIS  AQ+   EE++ +F D+   G K
Sbjct: 325 NSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLK 384

Query: 182 PDHVSFIGVL-----SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           PDH +   +       AC  + L+D+G++  A   K       +   + ++D+  + G +
Sbjct: 385 PDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKA-GFDSDLHVNSGILDMYIKCGDM 443

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK--PD 284
             A  ++ N     D   W  ++  C    N   A R+  ++ + +  PD
Sbjct: 444 VNA-GIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPD 492



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 146/295 (49%), Gaps = 15/295 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VH   +  GL  +V V +SLV+MY K G    +  VF+ M   + +S ++++  
Sbjct: 302 LELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISS 361

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVL-----RACAGLAALRLGKEVHCQYIRR 112
             Q+   E  + +F     E  + D F+   +      +AC  L  L  GK++H   I+ 
Sbjct: 362 CAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKA 421

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               D+ + S ++D+Y KCG +  A  +F  +   + + W SMISG   NG  ++ALRI+
Sbjct: 422 GFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIY 481

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLG 231
             M +    PD  +F  ++ A S +  +++GR+  A++ K +    P +     +VD+  
Sbjct: 482 HRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYA 539

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           + G +E+A  L +  + R + +LW  +L       NA  A  + K +    ++PD
Sbjct: 540 KCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPD 593



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 127/270 (47%), Gaps = 13/270 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK  HA+++  G  G+  + ++L+ MY KCG +  + +VFD   +++ V+ +A+L  Y  
Sbjct: 96  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 155

Query: 65  T-----GDFESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           +     G+ +  + +FR     +      +   VL+ C     L   + VH   I+    
Sbjct: 156 SVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLE 215

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV +  ALV++Y+KCG +  A  +F  M  R+++ WN M+ G+ Q G  +EA ++F + 
Sbjct: 216 WDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF 275

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLID-RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G +PD  S   +L+ C   G  D    K    +  +  +   +   N +V++  + G
Sbjct: 276 HRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMG 335

Query: 235 LLEEAETLIENADCRH-DSSLWEVLLGACT 263
               A  +    D +H D   W  ++ +C 
Sbjct: 336 CAYFAREVFN--DMKHLDLISWNSMISSCA 363



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 15/180 (8%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +LR       L LGK  H + +      D  + + L+ +Y+KCG +  A Q+F   P R+
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 149 LITWNSMISGFA-----QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           L+TWN+++  +A      +G  +E L +F  +         ++   VL  C     ++ G
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLC-----LNSG 197

Query: 204 RKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
               A     Y IK  +E        +V++  + G + +A  L +    R D  LW ++L
Sbjct: 198 CLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER-DVVLWNMML 256


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  266 bits (681), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 218/375 (58%), Gaps = 44/375 (11%)

Query: 2   LKQGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +K+G+++HA+V+      N +++ ++L+DMY KC  ++E+  +FD M  ++ VS ++++ 
Sbjct: 268 IKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVS 327

Query: 61  GYC-------------------------------QTGDFESVIRIFREMEEIDL----FS 85
           GY                                Q G+ E  + +FR ++   +    ++
Sbjct: 328 GYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYT 387

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCK-------DVIIESALVDLYAKCGCVDFAH 138
           FG +L ACA LA L+LG++ H  ++ + G +       DV + ++L+D+Y KCG V+   
Sbjct: 388 FGNLLNACANLADLQLGRQAH-SHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGC 446

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F  M  ++ ++WN+MI G+AQNG G +AL +F  M E G  PDHV+ IGVL ACSH G
Sbjct: 447 RVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAG 506

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           L+D GR +F SMT ++ + P  +HY CMVDLLGRAG LEEA+ LIE    + D+ +W  L
Sbjct: 507 LLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSL 566

Query: 259 LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
           L AC   RN  + E V KK++E+ P+    YVLL N+Y     W +  ++R LM+  GV 
Sbjct: 567 LAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVV 626

Query: 319 KMPGKSWIEANSKLN 333
           K PG SWIE   +LN
Sbjct: 627 KQPGCSWIEIQGELN 641



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 148/277 (53%), Gaps = 35/277 (12%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VHA +I         +++ L+D+YGKCG VD + ++FD+ML++N  S ++++  + ++G 
Sbjct: 41  VHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGF 100

Query: 68  FESVIRIFREMEEIDL-----------------------------------FSFGIVLRA 92
            +  + IF +M ++D                                    +SFG  L A
Sbjct: 101 LDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSA 160

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
           CAGL  L+LG ++H    R +   DV + SALVD+Y+KCG V++A  +F +M VR+ ++W
Sbjct: 161 CAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSW 220

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           NS+I+ + QNG  +EAL+IF +M + G +PD V+   V+SAC+ +  I  G++  A + K
Sbjct: 221 NSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVK 280

Query: 213 EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
               +  +   N ++D+  +   + EA  + +    R
Sbjct: 281 CDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIR 317



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 144/277 (51%), Gaps = 41/277 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G ++H+ V       +V + S+LVDMY KCG V+ +  VFD+M  ++ VS ++L+  
Sbjct: 167 LKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITC 226

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y Q G  +  ++IF EM     E D  +   V+ ACA ++A++ G+++H + ++    + 
Sbjct: 227 YEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRN 286

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVR----------------------------- 147
           D+I+ +AL+D+YAKC  ++ A  IF  MP+R                             
Sbjct: 287 DLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMM 346

Query: 148 --NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             ++ITWN++I+G  QNG  EEAL +F  +      P H +F  +L+AC+++  +  GR+
Sbjct: 347 VKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQ 406

Query: 206 HFASMTK-----EYRIKPKIEHYNCMVDLLGRAGLLE 237
             + + K     +Y     +   N ++D+  + G +E
Sbjct: 407 AHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVE 443



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 33/210 (15%)

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
           +D   F  +L  CA   + R    VH   I+     +  I++ L+D+Y KCGCVD A ++
Sbjct: 17  LDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKL 76

Query: 141 FLQMPVRNLI-------------------------------TWNSMISGFAQNGRGEEAL 169
           F +M  RN+                                +WNSMISGF Q+GR +EAL
Sbjct: 77  FDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEAL 136

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
             F  M   G   +  SF   LSAC+ +  +  G +   S+         +   + +VD+
Sbjct: 137 VYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQ-IHSLVYRSNYLSDVYMGSALVDM 195

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             + G +E A+++ +    R   S W  L+
Sbjct: 196 YSKCGRVEYAQSVFDEMTVRSRVS-WNSLI 224


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  266 bits (681), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 203/336 (60%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G +VHA V+  G  G+  V   L+DMY + G    +  VFD++ +++  S + ++  
Sbjct: 480 LRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMST 539

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +T + E  I  FR M    +  +  +    L  C+ LA L  G ++H  Y  +SG   
Sbjct: 540 YAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLH-SYTIKSGWNS 598

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ SALVD+Y KCG +  A  +F +    +L+ WN++I G+AQ+G G +AL  F +M +
Sbjct: 599 SVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMID 658

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD ++F+GVLSACSH GL+D GR++F  ++  Y I P +EHY CMVD+L +AG L 
Sbjct: 659 EGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLA 718

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE+LI       D+SLW+ +LGAC    N  +AER A+K+ E +PD   S +LL N+Y 
Sbjct: 719 EAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYA 778

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            + RWND  K+R+++   GVKK PG SWIE N KL+
Sbjct: 779 DLKRWNDVAKLRSMLVDRGVKKEPGCSWIEINGKLH 814



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 131/250 (52%), Gaps = 5/250 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK +HA+++  G   +  +  SL++MY KCG + ++  VFD M  ++ V+ +A++  
Sbjct: 76  LRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDVVAWTAMVSA 135

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               GD  + +R+F EM E  +    F+    L+AC   + L    +VH Q ++  G  D
Sbjct: 136 ITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQVHAQAVKLEGLFD 195

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + S+LV+ Y  CG VD A +  L  PVR+ ++WN++++ +A++G   + + +FD + E
Sbjct: 196 PYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYAKVMLVFDKLVE 255

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +    +   VL  C  +GL   G+     + K      ++ + NC++++  +    E
Sbjct: 256 SGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLN-NCLIEMYSKCLSAE 314

Query: 238 EAETLIENAD 247
           +A  +    D
Sbjct: 315 DAYEVFARID 324



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 112/211 (53%), Gaps = 4/211 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
            +VHA+ + L    +  V SSLV+ Y  CG VD + R       ++ VS +ALL  Y + 
Sbjct: 181 PQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARD 240

Query: 66  GDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           GD+  V+ +F ++    +EI  ++   VL+ C  L   + G+ VH   I+R    D ++ 
Sbjct: 241 GDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLN 300

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + L+++Y+KC   + A+++F ++   +++  + MIS F ++    EA  IF  M++ G K
Sbjct: 301 NCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVK 360

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           P+  +F+G+    S  G ++  R   A + K
Sbjct: 361 PNQYTFVGLAIVASRTGDVNLCRSIHAHIVK 391



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 124/258 (48%), Gaps = 7/258 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + +HA ++  G      V  ++V MY K G V ++   FD M   +  S + LL G+   
Sbjct: 383 RSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSG 442

Query: 66  GDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
            + E  +RIF+E+  E +  + +++  +LR C  L  LR G +VH   ++     D  + 
Sbjct: 443 NNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVS 502

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
             L+D+Y + GC   A  +F ++  R++ +W  ++S +A+   GE+A+  F  M     +
Sbjct: 503 KMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKR 562

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+  +    LS CS +  +  G +  +   K       +   + +VD+  + G L +AE 
Sbjct: 563 PNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNSSVVS--SALVDMYVKCGNLADAEM 620

Query: 242 LIENADCRHDSSLWEVLL 259
           L + +D  HD   W  ++
Sbjct: 621 LFDESD-THDLVEWNTII 637



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 8/181 (4%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           +L S+   L+ CA   ALR GK +H + +R     D  +  +L+++Y KCG +  A  +F
Sbjct: 59  ELRSYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVF 118

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC---SHMG 198
             MP R+++ W +M+S     G    ALR+F +M+E G  P+  +    L AC   S +G
Sbjct: 119 DGMPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLG 178

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
                + H  ++  E    P +   + +V+     G ++ AE  + ++  R D S W  L
Sbjct: 179 FTP--QVHAQAVKLEGLFDPYVS--SSLVEAYVSCGEVDVAERALLDSPVRSDVS-WNAL 233

Query: 259 L 259
           L
Sbjct: 234 L 234



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 97/199 (48%), Gaps = 4/199 (2%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G+ VH  VI  GL  + V+ + L++MY KC   ++++ VF ++ + + V  S ++  +
Sbjct: 279 KSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCF 338

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            +         IF +M ++ +    ++F  +    +    + L + +H   ++    +  
Sbjct: 339 DRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTK 398

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            +  A+V +Y K G V  A   F  M   ++ +WN+++SGF      E  LRIF ++   
Sbjct: 399 GVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICE 458

Query: 179 GTKPDHVSFIGVLSACSHM 197
           G   +  +++G+L  C+ +
Sbjct: 459 GVLANKYTYVGILRCCTSL 477


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  266 bits (681), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 132/338 (39%), Positives = 213/338 (63%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            + G+++H+ VI      ++ V SSL+DMY K G + E+ RVFD + +++ VS +A++ G
Sbjct: 127 FQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISG 186

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + +FR ++      +  ++  VL A +GLAAL  G++VH   +R      
Sbjct: 187 YAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFY 246

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V+++++L+D+Y+KCG + ++ +IF  MP R +I+WN+M+ G++++G G EA+ +F  M E
Sbjct: 247 VVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKE 306

Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR-IKPKIEHYNCMVDLLGRAGL 235
               KPD V+F+ VLS CSH G+ DRG + F  M  +    +P+IEHY C+VDL GRAG 
Sbjct: 307 ENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGR 366

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           +EEA   I+       +++W  LLGAC   +N H+ E VA++++E++ +   +YV+L N+
Sbjct: 367 VEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNL 426

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           Y + GRW+D   +R LMK   V K PG+SWIE +  L+
Sbjct: 427 YASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLH 464



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 156/293 (53%), Gaps = 15/293 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+ VHA +I       V + + L+ +Y KC  + ++ RV D+M ++N VS +A++ G
Sbjct: 26  IREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISG 85

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F EM       + F+F  VL +C   +  +LG+++H   I+ S    
Sbjct: 86  YSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESH 145

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+L+D+YAK G +  A ++F  +P R++++  ++ISG+AQ G  EEAL +F  +  
Sbjct: 146 IFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQR 205

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRA 233
            G + ++V++  VL+A S +  +D GR+        + ++ K+  Y    N ++D+  + 
Sbjct: 206 EGMRSNYVTYASVLTALSGLAALDHGRQ-----VHSHVLRAKLPFYVVLQNSLIDMYSKC 260

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE--RVAKKIMELKPD 284
           G L  +  + ++   R   S   +L+G           E  ++ K+  ++KPD
Sbjct: 261 GSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPD 313



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 1/165 (0%)

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E++   +  VL  C    A+R G+ VH   I+      V + + L+ LY KC C+  A +
Sbjct: 7   EVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARR 66

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +  +MP RN+++W +MISG++Q G   EAL +F +M   GT P+  +F  VL++C+    
Sbjct: 67  VLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSG 126

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
              GR+   S+  +   +  I   + ++D+  +AG + EA  + +
Sbjct: 127 FQLGRQ-IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFD 170


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  266 bits (681), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 126/327 (38%), Positives = 202/327 (61%), Gaps = 4/327 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GKEVHA     G   +V V SSL+++Y KCG ++ S  VF K+ + + V  +++L G
Sbjct: 432 LEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAG 491

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +      +  +  F++M ++  F    SF  V+ +CA L++L  G++ H Q ++     D
Sbjct: 492 FSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDD 551

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+L+++Y KCG V+ A   F  MP RN +TWN MI G+AQNG G  AL +++DM  
Sbjct: 552 IFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMIS 611

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++++ VL+ACSH  L+D G + F +M ++Y + PK+ HY C++D L RAG   
Sbjct: 612 SGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFN 671

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E E +++   C+ D+ +WEV+L +C    N  +A+R A+++  L P    SYVLL N+Y 
Sbjct: 672 EVEVILDAMPCKDDAVVWEVVLSSCRIHANLSLAKRAAEELYRLDPQNSASYVLLANMYS 731

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKS 324
           ++G+W+DA  +R LM ++ V+K PG S
Sbjct: 732 SLGKWDDAHVVRDLMSHNQVRKDPGYS 758



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 151/316 (47%), Gaps = 25/316 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+  H  VI +GL  N+ V ++L+ MY KCGL  ++ RVF  + + N V+ + ++ G  Q
Sbjct: 157 GRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQ 216

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACA----------GLAALRLGKEVHCQYI 110
           T   +    +FR M      +D  S   +L  CA          G++    GK++H   +
Sbjct: 217 TNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSV 276

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
           +    +D+ + ++L+D+YAK G +D A ++F+ +   ++++WN MI+G+      E+A  
Sbjct: 277 KLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAE 336

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
               M   G +PD V++I +L+AC   G +  GR+ F  M       P +  +N ++   
Sbjct: 337 YLQRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFDCMP-----CPSLTSWNAILSGY 391

Query: 231 GRAGLLEEAETLIENA--DCRH-DSSLWEVLLGACTT--FRNAHVAERVAKKIMELKPDC 285
            +     EA  L       C+H D +   V+L +C    F  A      A +      D 
Sbjct: 392 NQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDV 451

Query: 286 HLSYVLLDNVYRAVGR 301
           +++  L+ NVY   G+
Sbjct: 452 YVASSLI-NVYSKCGK 466



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 104/185 (56%), Gaps = 4/185 (2%)

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGI 88
           K G V    ++FD M   +  S +A+L GY Q  D    + +FR+M+      D  +  +
Sbjct: 362 KSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAV 421

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L +CA L  L  GKEVH    +     DV + S+L+++Y+KCG ++ +  +F ++P  +
Sbjct: 422 ILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELD 481

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           ++ WNSM++GF+ N  G++AL  F  M + G  P   SF  V+S+C+ +  + +G++  A
Sbjct: 482 VVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHA 541

Query: 209 SMTKE 213
            + K+
Sbjct: 542 QIVKD 546



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 142/325 (43%), Gaps = 50/325 (15%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK VHA++  L L  +  + +  +++Y KC  +  +  VFD +  KN  S +A+L  YC+
Sbjct: 25  GKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPHKNIFSWNAILAAYCK 84

Query: 65  TGDFESVIRIFREMEE----------------------IDLF-------------SFGIV 89
             + +   R+F +M +                      +D +             +F  V
Sbjct: 85  ARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSVMLDGVIPSHITFATV 144

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
             AC  L     G+  H   I+     ++ + +AL+ +YAKCG    A ++F  +P  N 
Sbjct: 145 FSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNE 204

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           +T+ +M+ G AQ  + +EA  +F  M   G + D VS   +L  C+  G  D G  H  S
Sbjct: 205 VTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAK-GERDVGPCHGIS 263

Query: 210 MTKEYR------IKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
              + +      +K   E      N ++D+  + G ++ AE +  N + RH    W +++
Sbjct: 264 TNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLN-RHSVVSWNIMI 322

Query: 260 GACTTFRNAHVAERVAKKIMELKPD 284
                + N   +E+ A+ +  ++ D
Sbjct: 323 AG---YGNRCNSEKAAEYLQRMQSD 344



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 110/238 (46%), Gaps = 40/238 (16%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QGK++H   + LG   ++ + +SL+DMY K G +D + +VF  + + + VS + ++ GY 
Sbjct: 267 QGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYG 326

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              + E      + M+    E D  ++  +L AC     +R G+                
Sbjct: 327 NRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRTGR---------------- 370

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
                              QIF  MP  +L +WN+++SG+ QN    EA+ +F  M    
Sbjct: 371 -------------------QIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQC 411

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             PD  +   +LS+C+ +G ++ G++  A+ ++++     +   + ++++  + G +E
Sbjct: 412 QHPDRTTLAVILSSCAELGFLEAGKEVHAA-SQKFGFYDDVYVASSLINVYSKCGKME 468



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 32/193 (16%)

Query: 78  MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
           ME+    +   +++ C    A   GK VH +  R +   D  + +  ++LY+KC  +  A
Sbjct: 1   MEKSKSLNLANLVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASA 60

Query: 138 HQIFLQMPVRNLITWNSMISGF--AQN-----------------------------GRGE 166
             +F  +P +N+ +WN++++ +  A+N                             G   
Sbjct: 61  CHVFDNIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYER 120

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           +AL  +D +   G  P H++F  V SAC  +   D GR+    + K   ++  I   N +
Sbjct: 121 QALDTYDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIK-VGLESNIYVVNAL 179

Query: 227 VDLLGRAGLLEEA 239
           + +  + GL  +A
Sbjct: 180 LCMYAKCGLNADA 192


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  266 bits (680), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 132/338 (39%), Positives = 213/338 (63%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            + G+++H+ VI      ++ V SSL+DMY K G + E+ RVFD + +++ VS +A++ G
Sbjct: 594 FQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISG 653

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + +FR ++      +  ++  VL A +GLAAL  G++VH   +R      
Sbjct: 654 YAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFY 713

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V+++++L+D+Y+KCG + ++ +IF  MP R +I+WN+M+ G++++G G EA+ +F  M E
Sbjct: 714 VVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKE 773

Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR-IKPKIEHYNCMVDLLGRAGL 235
               KPD V+F+ VLS CSH G+ DRG + F  M  +    +P+IEHY C+VDL GRAG 
Sbjct: 774 ENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGR 833

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           +EEA   I+       +++W  LLGAC   +N H+ E VA++++E++ +   +YV+L N+
Sbjct: 834 VEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNL 893

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           Y + GRW+D   +R LMK   V K PG+SWIE +  L+
Sbjct: 894 YASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLH 931



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 156/293 (53%), Gaps = 15/293 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+ VHA +I       V + + L+ +Y KC  + ++ RV D+M ++N VS +A++ G
Sbjct: 493 IREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISG 552

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F EM       + F+F  VL +C   +  +LG+++H   I+ S    
Sbjct: 553 YSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESH 612

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+L+D+YAK G +  A ++F  +P R++++  ++ISG+AQ G  EEAL +F  +  
Sbjct: 613 IFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQR 672

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRA 233
            G + ++V++  VL+A S +  +D GR+        + ++ K+  Y    N ++D+  + 
Sbjct: 673 EGMRSNYVTYASVLTALSGLAALDHGRQ-----VHSHVLRAKLPFYVVLQNSLIDMYSKC 727

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE--RVAKKIMELKPD 284
           G L  +  + ++   R   S   +L+G           E  ++ K+  ++KPD
Sbjct: 728 GSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPD 780



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 1/165 (0%)

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E++   +  VL  C    A+R G+ VH   I+      V + + L+ LY KC C+  A +
Sbjct: 474 EVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARR 533

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +  +MP RN+++W +MISG++Q G   EAL +F +M   GT P+  +F  VL++C+    
Sbjct: 534 VLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSG 593

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
              GR+   S+  +   +  I   + ++D+  +AG + EA  + +
Sbjct: 594 FQLGRQ-IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFD 637


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 208/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G++VH+  I  G    V V+++LV MY  CG  + +H++F+ M ++N V+ ++++ G
Sbjct: 156 VREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVING 215

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     + +FREM     E D F+   +L ACA L AL LG+  H   ++     +
Sbjct: 216 YALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGN 275

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +   +AL+DLYAKCG +  AH++F +M  +++++W S+I G A NG G+EAL +F ++  
Sbjct: 276 LHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELER 335

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P  ++F+GVL ACSH G++D G  +F  M +EY I PKIEHY CMVDLLGRAGL++
Sbjct: 336 KGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVK 395

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A   I+N   + ++ +W  LLGACT   +  + E    ++++L+P     YVLL N+Y 
Sbjct: 396 QAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYA 455

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +  RW+D  K+R  M   GVKK PG S +E  ++L+
Sbjct: 456 SEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLH 491



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 128/231 (55%), Gaps = 5/231 (2%)

Query: 34  CGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
           C  +  +H++F ++   N  + + +++GY ++ +    + ++R+M     E D  ++  +
Sbjct: 87  CSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFL 146

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L+A A L  +R G++VH   IR      V +++ LV +YA CG  + AH++F  M  RNL
Sbjct: 147 LKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNL 206

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           +TWNS+I+G+A NGR  EAL +F +M   G +PD  + + +LSAC+ +G +  GR+    
Sbjct: 207 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 266

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           M K   +   +   N ++DL  + G + +A  + +  + +   S   +++G
Sbjct: 267 MVK-VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVG 316



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           +  L + C  + +AHQIF Q+   N+ TWN+MI G+A++     AL ++  M     +PD
Sbjct: 80  IFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPD 139

Query: 184 HVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
             ++  +L A + +  +  G K H  ++   +     ++  N +V +    G  E A  L
Sbjct: 140 THTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQ--NTLVHMYAACGHAESAHKL 197

Query: 243 IE 244
            E
Sbjct: 198 FE 199


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 136/324 (41%), Positives = 206/324 (63%), Gaps = 6/324 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +HA +I +GL  +V V SSL+D Y K G +D    VFD+M+  + V  ++++ G+ Q+GD
Sbjct: 193 MHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGD 252

Query: 68  FESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
               + +F  M+E        +   VLRAC G+  L +G++VH   ++    +D+I+ +A
Sbjct: 253 GVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLKYD--RDLILHNA 310

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L+D+Y KCGC+  A  +F +M  R++I+W++MISG AQNGR  EAL++FD M   G  P+
Sbjct: 311 LLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPN 370

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
           +++ +GVL ACSH GL++ G  +F SM K + I+P+ EH NCMVDLLGRAG L+EA   I
Sbjct: 371 NITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFI 430

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
                  DS +W  LLGAC   +NA +A   A +I++L+P+   + +LL N+Y  + +W+
Sbjct: 431 GEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPEDQGARILLSNIYADLRQWS 490

Query: 304 DAFKIRTLMKYSGVKKMPGKSWIE 327
           +A K    M+  GVKK PG+SWIE
Sbjct: 491 NAEKSWKTMRDQGVKKEPGRSWIE 514



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 12/245 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT-GDFESVIRIFREM 78
           ++ V +SLV MY K G++D++  +F  M ++N VS + ++       G  +  +R   EM
Sbjct: 106 SLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEM 165

Query: 79  EE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
                  + ++F  VL AC     L     +H   I+     DV + S+L+D Y K G +
Sbjct: 166 RRDGVAANSYTFSSVLGACGTPGVL---AAMHADIIKVGLDSDVFVRSSLIDAYMKLGDL 222

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           D    +F +M   +L+ WNS+I+GFAQ+G G  A+ +F  M E G   +  +   VL AC
Sbjct: 223 DSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRAC 282

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           + M +++ GR+  A + K  R    +  +N ++D+  + G L +A+ L      R D   
Sbjct: 283 TGMVMLEVGRQVHAHVLKYDR---DLILHNALLDMYCKCGCLLDADALFSRMHDR-DVIS 338

Query: 255 WEVLL 259
           W  ++
Sbjct: 339 WSTMI 343


>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
          Length = 467

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 150/382 (39%), Positives = 219/382 (57%), Gaps = 48/382 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD---ESHRVFDKMLKKNSVSSSAL 58
           L++G++VH +V+  G C NV V +SLV++Y   G  D   ++ RVFD+++ +N VS ++L
Sbjct: 46  LREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSL 105

Query: 59  LQGYCQTGDFESVIRIFREMEEIDLFSFGIV----------------------------- 89
           L GY + GD +   RIF EM E ++ S+  +                             
Sbjct: 106 LAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQ 165

Query: 90  ------LRACAGLAALRLGKEVHCQYIRR--SGCKDVIIE--SALVDLYAKCGCVDFAHQ 139
                 L ACA L  L+LG  +H     R  +G + +++   ++L+ +YA CG +D A++
Sbjct: 166 VALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYK 225

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT---KPDHVSFIGVLSACSH 196
           +F+ M  R+ I+W SMI+GFA+ G  EEAL +F  M   GT   +PD ++FIGVL ACSH
Sbjct: 226 VFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSH 285

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            G +D+GR  F  M K++ I P+IEHY CMVDLL RAG L+EA  LIE+   + + ++W 
Sbjct: 286 AGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWG 345

Query: 257 VLLGACTTFRNAHVAERVAKKI-MELKPDCHLSY-VLLDNVYRAVGRWNDAFKIRTLMKY 314
            LLG C   +NA +A  VA+K+ +ELKPD    Y VLL NVY    RW D   +R  M  
Sbjct: 346 ALLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVE 405

Query: 315 SGVKKMPGKSWIEANSKLNHDL 336
            GV+K  G+SW++ N  + HD 
Sbjct: 406 IGVRKPAGRSWVQINGVV-HDF 426



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 38/184 (20%)

Query: 58  LLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +++G+ Q+     ++ ++  M E +     F++  ++  CA    LR G++VH + +   
Sbjct: 1   MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60

Query: 114 GCKDVIIESALVDLYA----------------------------------KCGCVDFAHQ 139
            C +V + ++LV+LYA                                  +CG VD A +
Sbjct: 61  YCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARR 120

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           IF +MP RN+++W +MI+G AQ GR ++AL +F +M   G K D V+ +  LSAC+ +G 
Sbjct: 121 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 180

Query: 200 IDRG 203
           +  G
Sbjct: 181 LKLG 184


>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 217/369 (58%), Gaps = 38/369 (10%)

Query: 2   LKQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVD---------------------- 38
           L+ G  +HA V  LGL   NV+V ++LVDMY KCG +D                      
Sbjct: 107 LRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMID 166

Query: 39  ---------ESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFS 85
                    E+  +FD+M +++++S ++++ G+ + G FE  +  FREM+    E D  +
Sbjct: 167 GCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVT 226

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQIFLQM 144
              VL ACA L AL LG  ++ +++ +   KD I I ++L+D+Y++CGC+  A Q+F QM
Sbjct: 227 IISVLAACANLGALGLGLWIN-RFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQM 285

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P R+L++WNSMI GFA NG  EEAL  F+ M + G +PD VSF G L+ACSH GL+D G 
Sbjct: 286 PKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGL 345

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           + F  M +  +I P+IEHY C+VDL  RAG LE+A  +I N   + +  +   LL AC T
Sbjct: 346 QFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRT 405

Query: 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324
             +  +AER+ K + E+ P    +YVLL N+Y AVGRW+ A K+R  MK  G+ K PG S
Sbjct: 406 HGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFS 465

Query: 325 WIEANSKLN 333
            IE +  ++
Sbjct: 466 SIEMDGSIH 474



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 123/261 (47%), Gaps = 48/261 (18%)

Query: 53  VSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACA--GLAALRLGKEVH 106
           VS ++ +  +C+ G        F  M+      +  +F  +L AC    L  LR G  +H
Sbjct: 55  VSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIH 114

Query: 107 CQYIRRSG--CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
             Y+R+ G   ++V++ +ALVD+Y+KCG +D A  +F +M VRN ++WN+MI G  +NG 
Sbjct: 115 A-YVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGE 173

Query: 165 GEEALRIFDDMTE-------------------------------GGTKPDHVSFIGVLSA 193
             EA+ +FD M+E                                G +PD+V+ I VL+A
Sbjct: 174 VGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAA 233

Query: 194 CSHMGLIDRGR--KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           C+++G +  G     F  M ++++   KI   N ++D+  R G +  A  + E    R  
Sbjct: 234 CANLGALGLGLWINRFV-MKQDFKDNIKIS--NSLIDMYSRCGCIRLARQVFEQMPKRSL 290

Query: 252 SSLWEVLLGACTTFRNAHVAE 272
            S   +++G      N H  E
Sbjct: 291 VSWNSMIVGFAL---NGHAEE 308



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 11/135 (8%)

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P+  +++W S I+   +NG+  EA   F  M   G +P+H++F+ +LSAC+   L   G 
Sbjct: 50  PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPL--EGL 107

Query: 205 KHFASMTKEYRIKPKIEHYNCM-----VDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           + F      Y  K  ++  N M     VD+  + G L+ A  + +    R+  S W  ++
Sbjct: 108 R-FGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVS-WNTMI 165

Query: 260 GACTTFRNAHVAERV 274
             C   RN  V E +
Sbjct: 166 DGC--MRNGEVGEAI 178


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 212/336 (63%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G+++H  V  LG+  N+ +ES+L+D+Y KCG ++++ RVF+  ++ + VS + +L G
Sbjct: 105 LEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVG 164

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  E  I  F +M     E+D      VL AC    +L LGK++H   I+RS   +
Sbjct: 165 FTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSLGSN 224

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + + L+++Y+KCG +  + ++F  +  RN ++WNSMI+ FA++G G  ALR++++M +
Sbjct: 225 PFVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQ 284

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P  ++F+ +L ACSH+GL+D+G K   SMTK Y I P+ EHY C+VD+LGRAGLL 
Sbjct: 285 EGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDMLGRAGLLN 344

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA++LIE    + D  +W+ LLGAC+   +  + +  A++++ L+P     YVLL N+Y 
Sbjct: 345 EAKSLIERLSIKPDVLIWQALLGACSIRGDTEIGKYAAEQLLLLEPKKPAPYVLLANIYS 404

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + GRW++  +    MK  GV K  G SWIE   K++
Sbjct: 405 SKGRWDERARTIKRMKEMGVAKETGISWIEIEKKVH 440



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 153/305 (50%), Gaps = 10/305 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           + V  +++V  + + G +D   +VFD+ML++N ++ +A++ G  Q   +E  + +F +M 
Sbjct: 22  DTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQMR 81

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               E +  ++   L AC+GL AL  G+++H    +     ++ IESAL+DLY+KCG ++
Sbjct: 82  CGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLE 141

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A ++F      + ++   ++ GF QNG  EEA+  F  M   GT+ D      VL AC 
Sbjct: 142 DARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACG 201

Query: 196 HMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
               +  G++ H   + +     P +   N ++++  + G L+E+  +     CR+  S 
Sbjct: 202 VDTSLGLGKQIHSLVIKRSLGSNPFVG--NGLINMYSKCGELQESIKVFNGLTCRNSVS- 258

Query: 255 WEVLLGACTTFRNAHVAERVAKK-IMELKPDCHLSYVLLDNVYRAVGRWNDAFK-IRTLM 312
           W  ++ A     +   A R+ ++ I E      L+++ L +    VG  +   K ++++ 
Sbjct: 259 WNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMT 318

Query: 313 KYSGV 317
           K  G+
Sbjct: 319 KVYGI 323



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 84/145 (57%), Gaps = 1/145 (0%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +D +  + +V  + + G +D   Q+F +M  RN+ITW ++ISG +QN   E++L +F  M
Sbjct: 21  RDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQM 80

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
             G  +P+ ++++  L+ACS +  +++GR+    +  +  I+  +   + ++DL  + G 
Sbjct: 81  RCGLIEPNFLTYLSSLTACSGLQALEKGRQ-IHGLVWKLGIQSNLCIESALMDLYSKCGS 139

Query: 236 LEEAETLIENADCRHDSSLWEVLLG 260
           LE+A  + E+A    + S+  +L+G
Sbjct: 140 LEDARRVFESAVELDEVSMTVILVG 164


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QGK++HA  I  G   ++ V S ++DMY KCG +  +  VF+ +   + V+ ++++ G
Sbjct: 46  LDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISG 105

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G+ +  +RI+  M +     D ++F  +++A + + AL  G+++H   I+     D
Sbjct: 106 CVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSD 165

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++LVD+YAKCG ++ A+++F +M VRN+  WN+M+ G AQ+G  EEA+ +F  M  
Sbjct: 166 PFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKS 225

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD VSFIG+LSACSH GL     ++  SM  +Y I+P+IEHY+C+VD LGRAGL++
Sbjct: 226 HGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQ 285

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+ +IE    +  +S+   LLGAC    +    +RVA ++  L+P    +YVLL N+Y 
Sbjct: 286 EADKVIETMPFKASASINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYA 345

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A  RW+D    R +MK   VKK PG SWI+  + L+
Sbjct: 346 AANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLH 381



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 10/234 (4%)

Query: 58  LLQGYCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           ++ GY    D +  + +F    +  E+ D  +     +AC  L  L  GK++H   I+  
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D+ + S ++D+Y KCG +  A  +F  +   + + W SMISG   NG  ++ALRI+ 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGR 232
            M +    PD  +F  ++ A S +  +++GR+  A++ K +    P +     +VD+  +
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAK 178

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            G +E+A  L +  + R + +LW  +L       NA  A  + K +    ++PD
Sbjct: 179 CGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPD 231


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/329 (39%), Positives = 205/329 (62%), Gaps = 7/329 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQGYC 63
           GK++HA V+   +  +  +E++L+  YGKCG +     +F +M  +++ VS ++++ GY 
Sbjct: 611 GKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYI 670

Query: 64  QT----GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                    + V  + ++ + +D F+F  VL ACA +A L  G EVH   +R     D++
Sbjct: 671 HNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIV 730

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I SALVD+YAKCG +D+A + F  MP RNL +WNSMISG+A++G G ++L +F  M   G
Sbjct: 731 IGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQG 790

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PDHV+F+GVLSACSH GL++ G  HF SM++ Y + P++EH++CMVDLLGR G L + 
Sbjct: 791 PLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKM 850

Query: 240 ETLIENADCRHDSSLWEVLLGAC--TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E  +     + +  +W  +LGAC     RN  +  R A+ ++E++P   ++Y+LL N+Y 
Sbjct: 851 EDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYA 910

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           + G+W+D  K R  M+ + VKK  G SW+
Sbjct: 911 SGGKWDDVAKTRVAMRKAFVKKEAGCSWV 939



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 138/264 (52%), Gaps = 9/264 (3%)

Query: 3   KQGKEVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++G EVHA +I  GL    + + + L++MY KCG ++++  VF  M  K+SV+ ++++ G
Sbjct: 405 RKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITG 464

Query: 62  YCQTGDFESVIRIFREMEEIDLF--SFGIV--LRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q   F   ++ F+EM   +L+  +F ++  L +CA L  + +G+++HC+ ++     D
Sbjct: 465 LDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLD 524

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE-EALRIFDDMT 176
           V + +AL+ LY +CG V    + F  M   + ++WNS+I   A +     EA+  F  M 
Sbjct: 525 VSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMM 584

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
             G  P+ V+FI +L+A S + L + G++ H   + +       IE  N ++   G+ G 
Sbjct: 585 RAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIE--NALLACYGKCGD 642

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           +   E +      R D   W  ++
Sbjct: 643 MGYCENIFSRMSDRQDEVSWNSMI 666



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 132/265 (49%), Gaps = 12/265 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++  +V   G   ++ V S+LV  + K G +  +  +F KM  +N VS + L+ G  + 
Sbjct: 304 EQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQ 363

Query: 66  GDFESVIRIFREME---EIDLFSFGIVLRACAGLAAL----RLGKEVHCQYIRRSGC--K 116
              E  + +F EM+   E++  S+ I+L A      L    R G EVH  ++ RSG    
Sbjct: 364 KRGEEAVELFMEMKDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHA-FLIRSGLLNA 422

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            + I + L+++YAKCG ++ A  +F  M  ++ +TWNSMI+G  QN +  EA++ F +M 
Sbjct: 423 QIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMR 482

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                P + + I  LS+C+ +G I  G +      K   +   +   N ++ L G  G +
Sbjct: 483 RTELYPSNFTMISALSSCASLGWISVGEQLHCEGLK-LGLDLDVSVSNALLALYGECGYV 541

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           +E +    +    +D   W  L+GA
Sbjct: 542 KECQKAF-SLMLDYDHVSWNSLIGA 565



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 138/273 (50%), Gaps = 17/273 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC-GLVDESHRVFDKMLKKNSVSSSALLQ 60
           LK G ++H  +       +V   + L+ MYG   G+VD + R FD +  +N VS ++++ 
Sbjct: 192 LKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMIS 251

Query: 61  GYCQTGDFESVIRIFREME--------EIDLFSFGIVLRACAGLA--ALRLGKEVHCQYI 110
            YCQ GD  S   IF  M+        + + ++FG ++ A   LA   L L +++  +  
Sbjct: 252 VYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVE 311

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
           +     D+ + SALV  +AK G + +A  IF +M  RN+++ N +I G  +  RGEEA+ 
Sbjct: 312 KSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVE 371

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH----FASMTKEYRIKPKIEHYNCM 226
           +F +M +   + +  S++ +L+A     +++ G++      A + +   +  +I   N +
Sbjct: 372 LFMEMKD-SVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGL 430

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +++  + G + +A  +    D + DS  W  ++
Sbjct: 431 INMYAKCGAINDACVVFRLMDNK-DSVTWNSMI 462



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 143/301 (47%), Gaps = 18/301 (5%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K  +E+H ++   G   ++ + ++L+++Y + G +    +VFD+M  +N VS S L+ GY
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACA--GLAALRLGKEVHCQYIRRSGCK 116
            +         +FR+M       + ++FG V+RAC   G   L+ G ++H    +     
Sbjct: 150 TRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVN 209

Query: 117 DVIIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           DV   + L+ +Y    G VD+A + F  +  RNL++ NSMIS + Q G    A  IF  M
Sbjct: 210 DVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269

Query: 176 TE----GGTKPDHVSFIGVLSA-CS--HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
            +     G KP+  +F  ++SA CS  + GL+    +   +  ++      +   + +V 
Sbjct: 270 QKEVMGDGLKPNEYTFGSLISATCSLANSGLVL--LEQLLTRVEKSGFLHDLYVGSALVS 327

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV--AKKIMELKPDCH 286
              +AG +  A+ + +    R+  SL  +++G     R     E     K  +EL P+ +
Sbjct: 328 GFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSY 387

Query: 287 L 287
           +
Sbjct: 388 M 388



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 7/220 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G EVH   +   L  ++V+ S+LVDMY KCG +D + R F+ M  +N  S ++++ G
Sbjct: 710 LERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISG 769

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G     + +F +M+      D  +F  VL AC+    +  G           G   
Sbjct: 770 YARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAP 829

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQ-NGRGEEALRIFDD 174
            +   S +VDL  + G ++       QMPV+ N++ W +++    + NGR     R   +
Sbjct: 830 RMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAE 889

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY 214
           M       + V++I + +  +  G  D   K   +M K +
Sbjct: 890 MLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAF 929


>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 209/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K G+ +HA++I +G   +  +++ L+ ++ K G +D SH +FD + KK+ +S +A++ G
Sbjct: 107 FKTGRRIHAQMIVVGYYPDEYLKTKLLILHAKTGDLDTSHILFDDLSKKSLISWNAMIAG 166

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + ++ EM +     D ++F  V RACA LA L  GK+ HC  I+    ++
Sbjct: 167 YVQKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACATLATLEKGKQAHCVMIKSQIKEN 226

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V++ SAL+D+Y KC  +   H++F +   RN+ITW ++ISG+ Q+GR  E L  F  M  
Sbjct: 227 VVVNSALMDMYFKCSSLYDGHRVFNKSLNRNVITWTALISGYGQHGRVAEVLVFFSKMKT 286

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P++V+F+ V+SACSH GL++ G ++F SMT++Y I+P+ +HY  MVDLLGRAG L 
Sbjct: 287 EGFRPNYVTFLAVISACSHGGLVNEGWEYFMSMTRDYGIQPRGQHYAAMVDLLGRAGRLH 346

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   ++N+ C   S +W  LLGAC    N  +    AKK  +L+P+    YV+L N Y 
Sbjct: 347 EAFEFVQNSPCGEHSVIWGALLGACRVHGNIDMLRFAAKKYFDLEPENAGKYVVLSNAYA 406

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G W++  ++R +M+ SG++K PG S IE   +++
Sbjct: 407 TFGLWDNVAEVRGVMRESGMRKDPGYSRIEVQREVH 442



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 113/223 (50%), Gaps = 3/223 (1%)

Query: 38  DESHRVFDKMLKKNSVSSSALLQGYCQTGD-FESVIRIFREMEEIDLFSFGIVLRACAGL 96
           + S+  F     +NS      L+G C +G   E+V  + R   +++  ++ ++L+ C   
Sbjct: 45  ETSNGSFQVQPPRNSFHLDETLKGLCFSGRVMEAVGLLCRTGLQVEPATYALLLQECIFK 104

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
              + G+ +H Q I      D  +++ L+ L+AK G +D +H +F  +  ++LI+WN+MI
Sbjct: 105 KEFKTGRRIHAQMIVVGYYPDEYLKTKLLILHAKTGDLDTSHILFDDLSKKSLISWNAMI 164

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216
           +G+ Q G  EE L ++D+M + G  PD  +F  V  AC+ +  +++G++    M K  +I
Sbjct: 165 AGYVQKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACATLATLEKGKQAHCVMIKS-QI 223

Query: 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           K  +   + ++D+  +   L +   +  N     +   W  L+
Sbjct: 224 KENVVVNSALMDMYFKCSSLYDGHRVF-NKSLNRNVITWTALI 265


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/364 (39%), Positives = 209/364 (57%), Gaps = 37/364 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSV-------- 53
           L  G+ +H  V  +G   N+ +++ +V +Y  CG + E+  +F+KM +++ V        
Sbjct: 144 LSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQ 203

Query: 54  -----------------------SSSALLQGYCQTGDFESVIRIFREMEEIDL----FSF 86
                                  S ++++ GY Q G  +  I +F +MEE  +     + 
Sbjct: 204 LIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTV 263

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             VL ACA L AL LG  +H +Y  R G K +V I + L+D+Y KCGC++ A ++F +M 
Sbjct: 264 VAVLAACADLGALDLGMRIH-EYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME 322

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R +++W++MI G A +GR EEALR+F DM++ G +P+ V+FIG+L ACSHMGLI  GR+
Sbjct: 323 ERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRR 382

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            FASMT++Y I P+IEHY CMVDLL RAGLL EA   I N   + +  +W  LLGAC   
Sbjct: 383 FFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVH 442

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           +N  +AE   K ++EL P     YV+L N+Y   GRW D  ++R  MK   VKK PG S 
Sbjct: 443 KNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSS 502

Query: 326 IEAN 329
           I  +
Sbjct: 503 ITVD 506



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 33/224 (14%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D F+   VLRAC  L  L  G+ +H    +     ++ +++ +V LYA CG +  A  +F
Sbjct: 127 DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLF 186

Query: 142 LQMPVRNLITWN-------------------------------SMISGFAQNGRGEEALR 170
            +MP R+++TWN                               SMI+G+ Q G+ +EA+ 
Sbjct: 187 EKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIH 246

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F  M E G K + V+ + VL+AC+ +G +D G +     +  +  K  +   N ++D+ 
Sbjct: 247 LFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMR-IHEYSNRHGFKRNVRISNTLIDMY 305

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
            + G LEEA  + E  + R   S W  ++G       A  A R+
Sbjct: 306 VKCGCLEEACKVFEEMEERTVVS-WSAMIGGLAMHGRAEEALRL 348



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 4/160 (2%)

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF--LQMPVRNLITWNSMISGFA 160
           ++VH Q I+ +    ++  + +  + A      +A QIF  ++        WNS +   A
Sbjct: 45  RQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALA 104

Query: 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI 220
           +     +A+ +F  + +    PD  +   VL AC ++  +  GR     + ++   +  +
Sbjct: 105 EGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRI-LHGVVEKVGFRSNL 163

Query: 221 EHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              N +V L    G + EA  L E    R D   W +++ 
Sbjct: 164 YLQNMIVHLYASCGEMGEARLLFEKMPQR-DVVTWNIMIA 202


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 134/337 (39%), Positives = 203/337 (60%), Gaps = 5/337 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +L +GK VH  +I   +  ++ + SSL+D+Y KCG V+ +  +F  M K  +VS + ++ 
Sbjct: 323 QLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMIS 382

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY   G     +R+F EM     E D  +F  VL AC+ LAAL  G+E+H   + R+   
Sbjct: 383 GYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGN 442

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + ++  AL+D+YAKCG V+ A  +F  +P R+L++W SMI+ +  +GR  EAL +F +M 
Sbjct: 443 NEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEML 502

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +   KPD V+F+ +LSACSH GL+D G  HF  M   Y I P+IEHY+C++ LLGRAG L
Sbjct: 503 QSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRL 562

Query: 237 EEA-ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            EA E L  N +   D  L   L  AC   +N  +   +A+ +++  PD   +Y++L N+
Sbjct: 563 HEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNM 622

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           Y + G+W++   +R+ MK  G+KK PG SWIE N K+
Sbjct: 623 YASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKI 659



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 160/294 (54%), Gaps = 18/294 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+E+H +++  G   +  V ++LVDMYGKCG ++ +  VF++M  K  V+ ++++ G
Sbjct: 223 LDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMING 282

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI---------VLRACAGLAALRLGKEVHCQYIRR 112
           Y   GD  S I++F+ M     +S G+          L AC+  A L  GK VH   IR 
Sbjct: 283 YGFKGDGISCIQLFKRM-----YSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRN 337

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               D+ + S+L+DLY KCG V+ A  IF  MP    ++WN MISG+   G+  +ALR+F
Sbjct: 338 RIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLF 397

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            +M++   +PD ++F  VL+ACS +  +++GR+   ++  E  +         ++D+  +
Sbjct: 398 GEMSKSFVEPDAITFTSVLAACSQLAALEKGRE-IHNLIVERNLGNNEVVMGALLDMYAK 456

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            G +EEA  + +    R D   W  ++ A  +    + A  +  ++++  +KPD
Sbjct: 457 CGAVEEAFGVFKCLPER-DLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPD 509



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 143/251 (56%), Gaps = 9/251 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVS-SSALLQ 60
           LKQGK +H KV+TLGL  +V V  +L+ +Y  C L D +  VFD +     +S  + L+ 
Sbjct: 19  LKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMA 78

Query: 61  GYCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           GY +   ++  + +F ++      + D +++  VL+AC GL  + LG+ +H   ++    
Sbjct: 79  GYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLM 138

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D+++ S+LV +YAKC   + A ++F +MP +++  WN++IS + Q+G+ EEALR F  M
Sbjct: 139 VDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMM 198

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G +PD V+    +S+C+ +  +DRGR+ H   +   +R+   +     +VD+ G+ G
Sbjct: 199 RRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSA--ALVDMYGKCG 256

Query: 235 LLEEAETLIEN 245
            LE A  + E 
Sbjct: 257 QLEMAIEVFEQ 267



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 139/268 (51%), Gaps = 6/268 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+  G+ +H  ++  GL  ++VV SSLV MY KC   + + ++FD+M  K+    + ++ 
Sbjct: 121 RVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVIS 180

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y Q+G FE  +R F  M     E D  +    + +CA L  L  G+E+H + +      
Sbjct: 181 CYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRM 240

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + +ALVD+Y KCG ++ A ++F QMP + ++ WNSMI+G+   G G   +++F  M 
Sbjct: 241 DSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMY 300

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP   +    L ACS    +  G+     + +  RI+P I   + ++DL  + G +
Sbjct: 301 SEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRN-RIQPDIFLNSSLMDLYFKCGKV 359

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTT 264
           E AET+ +    +  +  W V++    T
Sbjct: 360 ESAETIFKLMP-KTTTVSWNVMISGYVT 386



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 4/128 (3%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF--LQMPV 146
           +LRA     +L+ GK +H + +      DV +   L+ LY  C   D+A  +F  ++ P 
Sbjct: 9   LLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPF 68

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDD-MTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             +   N +++G+ +N   +EAL +FD  M     KPD  ++  VL AC  +  +  G+ 
Sbjct: 69  E-ISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQM 127

Query: 206 HFASMTKE 213
               + KE
Sbjct: 128 IHTCLVKE 135


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 200/337 (59%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H  +I   +  ++ V SSL+D+Y KCG +  +  VF  M K N VS + ++ G
Sbjct: 516 LQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISG 575

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G +   + IF +M +     D  +F  VL AC+ LA L  GKE+H   I      +
Sbjct: 576 YVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEIN 635

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++  AL+D+YAKCG VD A  IF Q+P R+ ++W SMI+ +  +G+  EAL++F+ M +
Sbjct: 636 EVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQ 695

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+F+ +LSACSH GL+D G  +F  M  EY  KP +EHY+C++DLLGR G L 
Sbjct: 696 SDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLR 755

Query: 238 EA-ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EA E L    D R D  L   L  AC   +   + E++ + ++E  PD   +Y++L N+Y
Sbjct: 756 EAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMY 815

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            +V +W++  K+R  +K  G+KK PG SWIE   +++
Sbjct: 816 ASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIH 852



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/289 (34%), Positives = 164/289 (56%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GKE+H +++  G   +  V S+LVDMYGKCG ++ +  VF+++ +KN VS ++++ G
Sbjct: 415 LERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAG 474

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   GD +S I +FR M+E      L +   +L AC+    L+LGK +H   IR     D
Sbjct: 475 YSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEAD 534

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+L+DLY KCG +  A  +F  MP  N+++WN MISG+ + G   EAL IF DM +
Sbjct: 535 IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRK 594

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F  VL ACS + ++++G K   +   E +++        ++D+  + G ++
Sbjct: 595 AGVKPDAITFTSVLPACSQLAVLEKG-KEIHNFIIESKLEINEVVMGALLDMYAKCGAVD 653

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           EA  +      R D   W  ++ A  +   A  A ++ +K+ +   KPD
Sbjct: 654 EALHIFNQLPER-DFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPD 701



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 144/264 (54%), Gaps = 6/264 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+  GK VH  VI  G   +VVV SS V MY KC + +++ ++FD+M +++  S + ++ 
Sbjct: 313 RVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVIS 372

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y Q G  E  + +F EM+    + D  +   V+ +CA L  L  GKE+H + +R     
Sbjct: 373 CYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL 432

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + SALVD+Y KCGC++ A ++F Q+  +N+++WNSMI+G++  G  +  + +F  M 
Sbjct: 433 DGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMD 492

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E G +P   +   +L ACS    +  G+     + +  R++  I   + ++DL  + G +
Sbjct: 493 EEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRN-RVEADIFVNSSLIDLYFKCGNI 551

Query: 237 EEAETLIENADCRHDSSLWEVLLG 260
             AE + +N    +  S W V++ 
Sbjct: 552 GSAENVFQNMPKTNVVS-WNVMIS 574



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 144/264 (54%), Gaps = 12/264 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H K+++LGL  N+ +  SL+++Y  C L   +  VF  +     ++    L   C 
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC- 272

Query: 65  TGDFESV--IRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           T +F  +  + +F  +        D F++  VL+AC+GL  +  GK VH   I+     D
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 332

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V++ S+ V +YAKC   + A ++F +MP R++ +WN++IS + Q+G+ E+AL +F++M  
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G KPD V+   V+S+C+ +  ++RG++ H   +   + +   +   + +VD+ G+ G L
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS--SALVDMYGKCGCL 450

Query: 237 EEAETLIENADCRHDSSLWEVLLG 260
           E A+ + E    R +   W  ++ 
Sbjct: 451 EMAKEVFEQIQ-RKNVVSWNSMIA 473



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 91  RACAGLAALRL-GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF--LQMPVR 147
           R  AG A   L GK +H + +      ++ +  +L++LY  C     A  +F  ++ P+ 
Sbjct: 202 RVTAGSALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL- 260

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDHVSFIGVLSACSHMGLIDRGR 204
           ++  WN +++   +N    E L +F  +      KPD  ++  VL ACS +G +  G+
Sbjct: 261 DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGK 318


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++GK+ H  ++  G    +   ++LVDMY K G   ++ + FD +L+ + V  ++++ G
Sbjct: 330 IEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAG 389

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + ++  M+   +     +   VL+AC+ LAAL  GK++H + I+     +
Sbjct: 390 YVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPE 449

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I SAL  +YAKCG ++    IF +M  R++++WN+MISG +QNG G EAL +F++M  
Sbjct: 450 LSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRL 509

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GTKPDH++F+ VLSACSHMG++ RG  +F  M  E+ + P++EHY CMVD+L RAG L 
Sbjct: 510 EGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLN 569

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE+A   H   LW +LL AC    N  +     +K+MEL      +YVLL ++Y 
Sbjct: 570 EAKEFIESAIIDHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYT 629

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A+GR  D  ++R +MK  GV+K  G SWIE  S ++
Sbjct: 630 AMGRLADVVRVRRMMKVRGVRKETGCSWIELKSHVH 665



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 159/295 (53%), Gaps = 15/295 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH  V+  G+   V V ++LV MY KCG ++ S  +F+    KN+++ SAL+ GY Q
Sbjct: 232 GKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQ 291

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVI 119
            GD    +++F +M         F+   VL+AC+ +AA+  GK+ H  Y+ +SG +  + 
Sbjct: 292 AGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTH-GYLLKSGYETQIY 350

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
             +ALVD+YAK G    A + F  +   +L+ W S+I+G+ QNG+ EEAL ++  M    
Sbjct: 351 TATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRK 410

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             P+ ++   VL ACS++  +++G K   + T +Y + P++   + +  +  + G LEE 
Sbjct: 411 ILPNELTMASVLKACSNLAALEQG-KQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEG 469

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV----AKKIMELKPDCHLSYV 290
             LI     + D   W  ++   +  +N H  E +      ++   KPD H+++V
Sbjct: 470 -VLIFRRMLQRDIVSWNAMISGLS--QNGHGREALELFEEMRLEGTKPD-HITFV 520



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 126/239 (52%), Gaps = 5/239 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            ++VH   I      +V V SSLV+ Y K G V E+ ++FD+M ++N VS + ++ GY  
Sbjct: 131 ARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYAS 190

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               +  + +F  M      ++ F F  VL A      +  GK+VHC  ++    + V +
Sbjct: 191 KQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSV 250

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV +YAKCG ++++  +F     +N ITW+++I+G++Q G   +AL++F  M   G 
Sbjct: 251 LNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGF 310

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            P   + +GVL ACS +  I+ G++    + K    + +I     +VD+  + G   +A
Sbjct: 311 VPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKS-GYETQIYTATALVDMYAKFGFTGDA 368



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 10/285 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNV-VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           LK+G+ +HA +I +    +   + ++L+  Y KCG +  +  VF+ +  KN VS + L+ 
Sbjct: 23  LKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIH 82

Query: 61  GYCQTGDFES--VIRIFREMEEIDLFSFGIVLRACAGLAALRLG-----KEVHCQYIRRS 113
           G    G   S  V+ +FR M   ++             AAL LG     ++VH   I+ +
Sbjct: 83  GLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTA 142

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              DV + S+LV+ Y K GCV  A ++F +MP RNL++W +MISG+A     +EAL +F 
Sbjct: 143 SIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFG 202

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M       +   F  VLSA      +D G++    + K   +   +   N +V +  + 
Sbjct: 203 LMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKN-GVLEFVSVLNALVTMYAKC 261

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           G L  +  L E    + ++  W  L+   +   ++H A ++  K+
Sbjct: 262 GNLNYSLMLFEMCSDK-NAITWSALITGYSQAGDSHKALKLFSKM 305


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 133/315 (42%), Positives = 202/315 (64%), Gaps = 6/315 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +++  +S++  Y KC LVD +  +FD M +K+ VS S+++ GY Q   F+  + +F+EM+
Sbjct: 441 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 500

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
               + D  +   V+ ACA LAAL  GK VH  YI+R+G   +VI+ + L+D+Y KCGCV
Sbjct: 501 MSGFKPDETTLVSVISACARLAALEQGKWVHA-YIKRNGLTINVILGTTLIDMYMKCGCV 559

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           + A ++F  M  + + TWN++I G A NG  E +L +F +M +    P+ ++F+GVL AC
Sbjct: 560 ETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGAC 619

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
            HMGL+D G+ HF SM  +++I+P ++HY CMVDLLGRAG L+EAE L+       D + 
Sbjct: 620 RHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVAT 679

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LLGAC    ++ +  RV +K++EL+PD    +VLL N+Y + G+W+D  +IR +M  
Sbjct: 680 WGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTK 739

Query: 315 SGVKKMPGKSWIEAN 329
             V K+PG S IEAN
Sbjct: 740 HRVLKIPGCSMIEAN 754



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 120/220 (54%), Gaps = 35/220 (15%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +++  +S++ ++G  GLV E+ ++FD+ML+K+ V+ SAL+  + Q   +E  IR F  M 
Sbjct: 309 SIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMH 368

Query: 80  EIDLFSFGIV----LRACAGLAALRLGKEVHC--------QYIR--------RSGCKDVI 119
           +I +    +V    L ACA L  + +GK +H          YI          S C D++
Sbjct: 369 KIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIM 428

Query: 120 I------ESALVDL---------YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
           +      E+ L+DL         Y KC  VD A  IF  MP +++++W+SMISG+AQN  
Sbjct: 429 VARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDL 488

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
            +E L +F +M   G KPD  + + V+SAC+ +  +++G+
Sbjct: 489 FDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGK 528



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 118/243 (48%), Gaps = 36/243 (14%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           + K+VH  V+ LG   +V V ++L++ +  C  + ++ RVF++    +SVS +++L GY 
Sbjct: 231 EAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYI 290

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
           + G+ E    I+ +M E                                   + +I  ++
Sbjct: 291 EIGNVEEAKHIYHQMPE-----------------------------------RSIIASNS 315

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           ++ L+   G V  A ++F +M  ++++TW+++I+ F QN   EEA+R F  M + G   D
Sbjct: 316 MIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVD 375

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
            V  +  LSAC+++ +++ G K   S++ +   +  I   N ++ +  + G +  A  L 
Sbjct: 376 EVVAVSALSACANLLVVNMG-KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLF 434

Query: 244 ENA 246
           + A
Sbjct: 435 DEA 437



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 8/197 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VHA +   GL  NV++ ++L+DMY KCG V+ +  VF  M++K   + +AL+ G
Sbjct: 524 LEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILG 583

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
               G  ES + +F  M++  +     +F  VL AC  +  +  G+      I     + 
Sbjct: 584 LAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQP 643

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
           +V     +VDL  + G +  A ++  +MP+  ++ TW +++    ++G  E   R+   +
Sbjct: 644 NVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKL 703

Query: 176 TEGGTKPDHVSFIGVLS 192
            E   +PDH  F  +LS
Sbjct: 704 IE--LQPDHDGFHVLLS 718



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           + Y QT        +++ M       D +++ ++++AC+   +    K+VH   ++    
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + + L++ ++ C  +  A ++F +  V + ++WNS+++G+ + G  EEA  I+  M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 176 TE 177
            E
Sbjct: 306 PE 307


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 213/373 (57%), Gaps = 42/373 (11%)

Query: 3    KQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            ++G++VHA+V+       ++V+ ++LVDMY KCG    +  VFD+M  ++ VS ++L+ G
Sbjct: 1010 REGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITG 1069

Query: 62   YCQTGDFESVIRIFREMEEIDL-----------------------------------FSF 86
            Y ++ + E    +F +M E ++                                   +++
Sbjct: 1070 YARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTY 1129

Query: 87   GIVLRACAGLAALRLGKEVHCQYIRRS------GCKDVIIESALVDLYAKCGCVDFAHQI 140
            G VL AC  +A L+LG++ H   ++           DV + ++LVD+Y K G +D   ++
Sbjct: 1130 GNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 1189

Query: 141  FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
            F +M  R+ ++WN+MI G AQNGR ++AL +F+ M      PD V+ IGVLSAC H GL+
Sbjct: 1190 FERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLV 1249

Query: 201  DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            + GR++F SMT+++ I P  +HY CM+DLLGRAG L+E E LI+      D+ LW  LLG
Sbjct: 1250 EEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLG 1309

Query: 261  ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
            +C   +N  + E  A K+ EL P     YVLL N+Y  +G+W D F++R+ MK+ GV K 
Sbjct: 1310 SCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQ 1369

Query: 321  PGKSWIEANSKLN 333
            PG SWIE   K++
Sbjct: 1370 PGCSWIEIGRKVS 1382



 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 165/294 (56%), Gaps = 6/294 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRV--FDKMLKKNSVSSSALL 59
           + +G+EVHA  I  G   + +++++LV MY KCG +  + R+  F+   +++S S ++L+
Sbjct: 400 IGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLI 459

Query: 60  QGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            GY +    E+ +    +M+     +  +F   L ACA +  L+ G ++H   IR+    
Sbjct: 460 SGYERHSMSEAALYALTKMQSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEI 519

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D I+ S L+D+Y KC   D++ +IF   P R++I WNSMI G A +G+GE  L +FD+M 
Sbjct: 520 DDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQ 579

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G K D V+F+G L +C   G +  GR +F  M  E  I P+IEHY CM++LLG+ G +
Sbjct: 580 KQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDE-SIIPRIEHYECMIELLGKHGCM 638

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYV 290
            E E  +E+      +++W  +   C  + N  + ER AK I +  P   + +V
Sbjct: 639 VELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNPLTPVQFV 692



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 158/316 (50%), Gaps = 44/316 (13%)

Query: 3    KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
            + G +VHA V       +V + S+L+DMY KC   +E+ RVF+ M ++N VS ++L+  Y
Sbjct: 909  RTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCY 968

Query: 63   CQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-D 117
             Q G     + +F  M +     D  +   V+ ACAGLAA R G++VH + ++    + D
Sbjct: 969  EQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFRED 1028

Query: 118  VIIESALVDLYAKCG------C-------------------------VDFAHQIFLQMPV 146
            +++ +ALVD+YAKCG      C                         V+ A  +F QM  
Sbjct: 1029 MVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVE 1088

Query: 147  RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
            +N+I WN +I+ +AQNG  EEALR+F  +      P H ++  VL+AC ++  +  G++ 
Sbjct: 1089 KNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQA 1148

Query: 207  FASMTKE---YRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
               + KE   +   P+ + +  N +VD+  + G +++   + E    R + S   +++G 
Sbjct: 1149 HVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGH 1208

Query: 262  CTTFRNA---HVAERV 274
                R     H+ ER+
Sbjct: 1209 AQNGRAKDALHLFERM 1224



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 146/328 (44%), Gaps = 39/328 (11%)

Query: 25   SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEID-- 82
            ++LV  Y + G + ++ RVFD++   N+ S +ALL  + + G       +F  + + D  
Sbjct: 799  NTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQC 858

Query: 83   ---------------------------------LFSFGIVLRACAGLAALRLGKEVHCQY 109
                                              +SF   L ACA     R G +VH   
Sbjct: 859  SYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALV 918

Query: 110  IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
             +    KDV I SAL+D+YAKC   + A ++F  MP RN+++WNS+I+ + QNG   EAL
Sbjct: 919  SKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEAL 978

Query: 170  RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
             +F  M + G  PD V+   V+SAC+ +     GR+  A + K  R +  +   N +VD+
Sbjct: 979  VLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDM 1038

Query: 230  LGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY 289
              + G    A  + +    R   S   ++ G   +  N   A+ V  +++E      +++
Sbjct: 1039 YAKCGRTRAARCVFDRMASRSVVSETSLITGYARS-ANVEDAQMVFSQMVEKNV---IAW 1094

Query: 290  VLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
             +L   Y   G   +A ++   +K   V
Sbjct: 1095 NVLIAAYAQNGEEEEALRLFVRLKRESV 1122



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 148/300 (49%), Gaps = 42/300 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD----------------------- 38
           L++G+ +HA V+  G   +V V SS+VDMY KCG +D                       
Sbjct: 268 LEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSG 327

Query: 39  --------ESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSF 86
                   ++ RVF+ M ++N VS +A+L GY ++ D    + +F++M     E D  + 
Sbjct: 328 LASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITL 387

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL--QM 144
           G VL AC G+  +  G+EVH   I+       I+++ALV +Y+KCGC+  A ++ L    
Sbjct: 388 GSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMG 447

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
             R+  +WNS+ISG+ ++   E AL     M +    P+  +F   L+AC+++ L+ +G 
Sbjct: 448 SERDSYSWNSLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFLLKQGM 506

Query: 205 KHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           +  A M ++ Y I   +   + ++D+  +    + +  + E    R D  LW  ++  C 
Sbjct: 507 QIHAYMIRKGYEIDDILR--SVLIDMYCKCRQFDYSIRIFEARPSR-DVILWNSMIFGCA 563



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 136/294 (46%), Gaps = 43/294 (14%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            +++H  +       NV++ ++LVD+YG C L+ ++ R FD +L+ N++S + +++ Y  
Sbjct: 170 ARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHL 229

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLR----ACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  + +F  M    +   G  +     AC    AL  G+ +H   +R      V +
Sbjct: 230 AGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHV 289

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPV-------------------------------RNL 149
            S++VD+YAKCG +D A  +F   P+                               RNL
Sbjct: 290 RSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNL 349

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK---H 206
           ++WN+M++G+ ++     AL +F  M +   + D ++   VLSAC+  G++D G+    H
Sbjct: 350 VSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACT--GILDIGKGEEVH 407

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE-NADCRHDSSLWEVLL 259
             ++   +   P ++  N +V +  + G L  AE L+        DS  W  L+
Sbjct: 408 AFAIKCGFFSSPILK--NALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLI 459



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 102/227 (44%), Gaps = 13/227 (5%)

Query: 28  VDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL---- 83
           ++    CG V ++  +FD M  ++  S +A++    + G     + +F  M  + +    
Sbjct: 92  IESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKD 151

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
            +   VL  CA    L   +++H    +R    +VI+ +ALVD+Y  C  +  A + F  
Sbjct: 152 ATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDD 211

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           +   N I+WN ++  +   G G+ A+ +F  M   G +P   +    + AC     ++ G
Sbjct: 212 ILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEG 271

Query: 204 RKHFASMTKEYRIKPKIEHY----NCMVDLLGRAGLLEEAETLIENA 246
           R         + ++   EH+    + +VD+  + G ++ A++L   A
Sbjct: 272 R-----CIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLA 313


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 203/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK+VHA +I      N+ V S+LVDMY KC  +  +  VF KM  KN VS +A+L G
Sbjct: 291 LQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVG 350

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  ++ F +M+    E D F+ G V+ +CA LA+L  G + H + +       
Sbjct: 351 YGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISF 410

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV LY KCG ++ +H++F ++  ++ +TW +++SG+AQ G+  E + +F+ M  
Sbjct: 411 ITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLA 470

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+FIGVLSACS  GL+++G + F SM  E+ I P  +HY CM+DL  RAG +E
Sbjct: 471 HGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIE 530

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I       D+  W  LL +C  + N  + +  A+ +MEL P    SYVLL +VY 
Sbjct: 531 EARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYA 590

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G+W +  ++R  M+  G++K PG SWI+  ++++
Sbjct: 591 AKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVH 626



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 163/320 (50%), Gaps = 39/320 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGK---------------------------- 33
           +K G+++H  V+  G    V V S LVDMY K                            
Sbjct: 159 VKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMG 218

Query: 34  ---CGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSF 86
              CG V++S R+F +M +++S+S ++++ G+ Q G     I IFREM+    ++D ++F
Sbjct: 219 LMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTF 278

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
           G VL AC G+ AL+ GK+VH   IR     ++ + SALVD+Y KC  +  A  +F +M  
Sbjct: 279 GSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTC 338

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +N+++W +M+ G+ QNG  EEA++ F DM + G +PD  +   V+S+C+++  ++ G + 
Sbjct: 339 KNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQF 398

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
            A       I   I   N +V L G+ G +E++  L      + D   W  L+     F 
Sbjct: 399 HARALTSGLIS-FITVSNALVTLYGKCGSIEDSHRLFNEISFK-DEVTWTALVSGYAQFG 456

Query: 267 NAHVAERVAKKIME--LKPD 284
            A+    + + ++   LKPD
Sbjct: 457 KANETIGLFESMLAHGLKPD 476



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 129/278 (46%), Gaps = 38/278 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+   ++++  Y K G V E   +FD M +++ VS ++L+ GY   G     ++ +  M 
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 80  E------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133
           +      ++  +F  +L   +    ++LG+++H   ++      V + S LVD+Y+K G 
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGM 193

Query: 134 VDFAHQIFLQMPVRNL-------------------------------ITWNSMISGFAQN 162
           +  A ++F ++P +N+                               I+W SMI+GF QN
Sbjct: 194 ISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQN 253

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
           G   +A+ IF +M     + D  +F  VL+AC  +  +  G++  A + +    K  I  
Sbjct: 254 GLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT-DYKDNIFV 312

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            + +VD+  +   ++ AE + +   C++  S   +L+G
Sbjct: 313 ASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVG 350



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ C         K +H   I+     +  + + L+  YAK G + +A ++F QMP  N
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPN 74

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           L +WN+++S +++ GR  E   +FD M     + D VS+  ++S  +  GLI +  K + 
Sbjct: 75  LYSWNTILSAYSKLGRVSEMEYLFDAM----PRRDGVSWNSLISGYAGCGLIYQSVKAYN 130

Query: 209 SMTK 212
            M K
Sbjct: 131 LMLK 134


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 210/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+G+++HA+    G   ++  +++LV +Y KCG ++E++  F++    ++++ +AL+ G
Sbjct: 590 LKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSG 649

Query: 62  YCQTGDFESVIRIFREM--EEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G+ E  +R+F  M  E ID   F+FG  ++A +  A ++ GK+VH    +     +
Sbjct: 650 FQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 709

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +A++ +YAKCG +  A + FL++ ++N ++WN+MI+ ++++G G EAL  FD M  
Sbjct: 710 TEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIH 769

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +P+HV+ +GVLSACSH+GL+D+G ++F SM  EY + PK EHY C+VD+L RAGLL 
Sbjct: 770 SNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLS 829

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A+  I       D+ +W  LL AC   +N  + E  A  ++EL+P+   +YVLL N+Y 
Sbjct: 830 RAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 889

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              +W+     R  MK  GVKK PG+SWIE  + ++
Sbjct: 890 VCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 925



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 139/267 (52%), Gaps = 12/267 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H+++I      N  V S L+DMY K G +D +  +  +   K+ VS + ++ G
Sbjct: 489 LELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 548

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y Q    +  +  FR+M       +E+ L +    + ACAGL AL+ G+++H Q      
Sbjct: 549 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTN---AVSACAGLQALKEGQQIHAQACVSGF 605

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D+  ++ALV LY+KCG ++ A+  F Q    + I WN+++SGF Q+G  EEALR+F  
Sbjct: 606 SSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFAR 665

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G   ++ +F   + A S    + +G++  A +TK      + E  N ++ +  + G
Sbjct: 666 MNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNAIISMYAKCG 724

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
            + +A+        +++ S W  ++ A
Sbjct: 725 SISDAKKQFLELSMKNEVS-WNAMINA 750



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 139/281 (49%), Gaps = 6/281 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++HA    LG   N  +E +L+++Y KC  ++ +   F +   +N V  + +L  
Sbjct: 388 LFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVA 447

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y    D  +  RIFR+M  EEI  + +++  +L+ C  L  L LG+++H Q I+ S   +
Sbjct: 448 YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLN 507

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + S L+D+YAK G +D A  I ++   +++++W +MI+G+ Q    ++AL  F  M +
Sbjct: 508 AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD 567

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + D V     +SAC+ +  +  G++  A           +   N +V L  + G +E
Sbjct: 568 RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALVTLYSKCGNIE 626

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           EA    E  +   D+  W  L+       N   A RV  ++
Sbjct: 627 EAYLAFEQTEA-GDNIAWNALVSGFQQSGNNEEALRVFARM 666



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 155/304 (50%), Gaps = 20/304 (6%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++HA++I  GL  + +V + L+D+Y + G VD + RVFD +  K+  S  A++ G  + 
Sbjct: 190 EQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKN 249

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
                 IR+F +M  + +    ++F  VL AC  + +L +G+++H   ++     D  + 
Sbjct: 250 ECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVC 309

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALV LY   G +  A  IF  M  R+ +T+N++I+G +Q G GE+A+ +F  M   G +
Sbjct: 310 NALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLE 369

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEEA- 239
           PD  +   ++ ACS  G +  G++  A  TK  +    KIE    +++L  +   +E A 
Sbjct: 370 PDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIE--GALLNLYAKCSDIETAL 427

Query: 240 ----ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK--KIMELKPDCHLSYVLLD 293
               ET +EN        LW V+L A     +   + R+ +  +I E+ P+ +    +L 
Sbjct: 428 NYFLETEVENV------VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 481

Query: 294 NVYR 297
              R
Sbjct: 482 TCIR 485



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 130/271 (47%), Gaps = 12/271 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H  V+ LG   +  V ++LV +Y   G +  +  +F  M ++++V+ + L+ G
Sbjct: 287 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLING 346

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  + +F+ M+    E D  +   ++ AC+    L  G+++H    +     +
Sbjct: 347 LSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASN 406

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             IE AL++LYAKC  ++ A   FL+  V N++ WN M+  +        + RIF  M  
Sbjct: 407 DKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI 466

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC--MVDLLGRAGL 235
               P+  ++  +L  C  +G ++ G +  + + K      ++  Y C  ++D+  + G 
Sbjct: 467 EEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK---TSFQLNAYVCSVLIDMYAKLGK 523

Query: 236 LEEA-ETLIENADCRHDSSLWEVLLGACTTF 265
           L+ A + LI  A    D   W  ++   T +
Sbjct: 524 LDTAWDILIRFAG--KDVVSWTTMIAGYTQY 552



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 141/292 (48%), Gaps = 9/292 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++H++++ LG   N  +   L+D Y   G +D + +VFD+M ++   + + +++ 
Sbjct: 84  LDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKE 143

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRAC-AGLAALRLGKEVHCQYIRRSGCK 116
                    V  +F  M   ++     +F  VL AC  G  A  + +++H + I +   K
Sbjct: 144 LASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGK 203

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             I+ + L+DLY++ G VD A ++F  + +++  +W +MISG ++N    EA+R+F DM 
Sbjct: 204 STIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMY 263

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P   +F  VLSAC  +  ++ G +    +  +          N +V L    G L
Sbjct: 264 VLGIMPTPYAFSSVLSACKKIESLEIGEQ-LHGLVLKLGFSSDTYVCNALVSLYFHLGSL 322

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCH 286
             AE +  N   R D+  +  L+   +       A  + K++    L+PD +
Sbjct: 323 ISAEHIFSNMSQR-DAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSN 373


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 136/336 (40%), Positives = 206/336 (61%), Gaps = 6/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G+ +H   +  GL     V ++LVDMY +C +V+++H++F KM K++  + + ++  
Sbjct: 167 LKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGA 226

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
             ++G     +  F  M       D  +   V+ ACA L A+   K +H  YI  +G   
Sbjct: 227 LAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHA-YINGTGYSL 285

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DVI+ +A++D+YAKCG V+ A  IF +M VRN+ITW++MI+ +  +G+GE+AL +F  M 
Sbjct: 286 DVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMML 345

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+ ++F+ +L ACSH GLI+ G++ F+SM  EY + P ++HY CMVDLLGRAG L
Sbjct: 346 RSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRL 405

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA  +IE      D  LW  LLGAC   R+  +AERVA+ +++L+      YVLL N+Y
Sbjct: 406 DEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIY 465

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
              G+W D  K R LM   G++K+PG++WIE   KL
Sbjct: 466 ANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKL 501



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 145/265 (54%), Gaps = 8/265 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L Q ++VHA++ T G   N+ V + L+ MY + G ++++  +FD M K++  S S ++ G
Sbjct: 66  LFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGG 125

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G+F S   +FRE+      +D +S  +V+RAC  L  L+ G+ +HC  ++      
Sbjct: 126 YAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYG 185

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + + LVD+YA+C  V+ AHQIF++M  R+L TW  MI   A++G   E+L  FD M  
Sbjct: 186 HFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRN 245

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLL 236
            G  PD V+ + V+ AC+ +G +++ +   A +    Y +   +     M+D+  + G +
Sbjct: 246 QGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILG--TAMIDMYAKCGSV 303

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           E A  + +    R+  + W  ++ A
Sbjct: 304 ESARWIFDRMQVRNVIT-WSAMIAA 327


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 131/334 (39%), Positives = 205/334 (61%), Gaps = 4/334 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+H  V+     G   VES+L+DMY KCG +D SH +F KM  K+ V+ ++++  
Sbjct: 460 LPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISS 519

Query: 62  YCQTGDFESVIRIFREM--EEIDLFSFGI--VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G+ +  + +FR+M  E I   +  I   L ACA L A+  GKE+H   I+     D
Sbjct: 520 FSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKAD 579

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  ESAL+D+YAKCG ++ A ++F  MP +N ++WNS+IS +  +G  +E++     M E
Sbjct: 580 IFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQE 639

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPDHV+F+ ++SAC+H GL++ G + F  MTKEY I P++EH+ CMVDL  R+G L+
Sbjct: 640 EGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLD 699

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A   I +   + D+ +W  LL AC   RN  +A+  ++++ +L P     YVL+ N+  
Sbjct: 700 KAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINA 759

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
             GRW+   K+R LMK + + K+PG SW++ N+ 
Sbjct: 760 VAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNS 793



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 148/264 (56%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LKQGKEVH  +I   +  +  + S+LVD+Y KC  V  +  ++D     + V  S ++ G
Sbjct: 359 LKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISG 418

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  E  +++FR + E     +  +   VL ACA ++AL LG+E+H   +R +    
Sbjct: 419 YVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGK 478

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +ESAL+D+YAKCG +D +H IF +M +++ +TWNSMIS F+QNG  +EAL +F  M  
Sbjct: 479 CYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCM 538

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K ++V+    LSAC+ +  I  G++    + K   IK  I   + ++D+  + G +E
Sbjct: 539 EGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKG-PIKADIFAESALIDMYAKCGNME 597

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A  + E    +++ S W  ++ A
Sbjct: 598 LALRVFEFMPDKNEVS-WNSIISA 620



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 113/205 (55%), Gaps = 4/205 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VH      GL  +V V S+L+ MY   GL+ ++   FD M  ++ V  + ++ GY +
Sbjct: 160 GRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIK 219

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD    +R+FR M     E +  +    L  CA  A L  G ++H   ++    ++V +
Sbjct: 220 AGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAV 279

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L+ +YAKC C+D A ++F  +P  +L+TWN MISG  QNG  +EAL +F DM   G 
Sbjct: 280 ANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGA 339

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK 205
           +PD V+ + +L A + +  + +G++
Sbjct: 340 RPDSVTLVSLLPALTDLNGLKQGKE 364



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 133/265 (50%), Gaps = 8/265 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H+  +  GL   V V ++L+ MY KC  +D++ R+F+ + + + V+ + ++ G
Sbjct: 258 LLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISG 317

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  +  + +F +M       D  +   +L A   L  L+ GKEVH   IR     D
Sbjct: 318 CVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMD 377

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SALVD+Y KC  V  A  ++      +++  +++ISG+  NG  E+AL++F  + E
Sbjct: 378 AFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLE 437

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              KP+ V+   VL AC+ +  +  G++ H   +   Y  K  +E  + ++D+  + G L
Sbjct: 438 QCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVE--SALMDMYAKCGRL 495

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           + +  +      + D   W  ++ +
Sbjct: 496 DLSHYIFSKMSLK-DEVTWNSMISS 519



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 127/275 (46%), Gaps = 16/275 (5%)

Query: 2   LKQGKEVHAKVITLGLCGN---VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS--- 55
           L  G ++HA+ +  G   N   + + + L+ MY       ++  VF  + +  + SS   
Sbjct: 48  LPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPW 107

Query: 56  SALLQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQY 109
           + L++G+   G     +  + +M         D  +   V+++CA L A+ LG+ VH + 
Sbjct: 108 NWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVH-RT 166

Query: 110 IRRSG-CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
            R +G   DV + SAL+ +Y+  G +  A   F  MP R+ + WN M+ G+ + G    A
Sbjct: 167 ARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGA 226

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           +R+F +M   G +P+  +    LS C+    +  G +   S+  +  ++ ++   N ++ 
Sbjct: 227 VRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQ-LHSLAVKCGLEQEVAVANTLLS 285

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           +  +   L++A  L E    R D   W  ++  C 
Sbjct: 286 MYAKCRCLDDAWRLFELLP-RDDLVTWNGMISGCV 319


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 144/364 (39%), Positives = 209/364 (57%), Gaps = 37/364 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSV-------- 53
           L  G+ +H  V  +G   N+ +++ +V +Y  CG + E+  +F+KM +++ V        
Sbjct: 144 LSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQ 203

Query: 54  -----------------------SSSALLQGYCQTGDFESVIRIFREMEEIDL----FSF 86
                                  S ++++ GY Q G  +  I +F +MEE  +     + 
Sbjct: 204 LIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTV 263

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             VL ACA L AL LG  +H +Y  R G K +V I + L+D+Y KCGC++ A ++F +M 
Sbjct: 264 VAVLAACADLGALDLGMRIH-EYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME 322

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R +++W++MI G A +GR EEALR+F DM++ G +P+ V+FIG+L ACSHMGLI  GR+
Sbjct: 323 ERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRR 382

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            FASMT++Y I P+IEHY CMVDLL RAGLL EA   I N   + +  +W  LLGAC   
Sbjct: 383 FFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVH 442

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           +N  +AE   K ++EL P     YV+L N+Y   GRW D  ++R  MK   VKK PG S 
Sbjct: 443 KNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSS 502

Query: 326 IEAN 329
           I  +
Sbjct: 503 ITVD 506



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 33/224 (14%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D F+   VLRAC  L  L  G+ +H    +     ++ +++ +V LYA CG +  A  +F
Sbjct: 127 DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLF 186

Query: 142 LQMPVRNLITWN-------------------------------SMISGFAQNGRGEEALR 170
            +MP R+++TWN                               SMI+G+ Q G+ +EA+ 
Sbjct: 187 EKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIH 246

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F  M E G K + V+ + VL+AC+ +G +D G +     +  +  K  +   N ++D+ 
Sbjct: 247 LFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMR-IHEYSNRHGFKRNVRISNTLIDMY 305

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
            + G LEEA  + E  + R   S W  ++G       A  A R+
Sbjct: 306 VKCGCLEEACKVFEEMEERTVVS-WSAMIGGLAMHGRAEEALRL 348



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 4/160 (2%)

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF--LQMPVRNLITWNSMISGFA 160
           ++VH Q I+ +    ++  + +  + A      +A QIF  ++        WNS +   A
Sbjct: 45  RQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALA 104

Query: 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI 220
           +     +A+ +F  + +    PD  +   VL AC ++  +  GR     + ++   +  +
Sbjct: 105 EGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRI-LHGVVEKVGFRSNL 163

Query: 221 EHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              N +V L    G + EA  L E    R D   W +++ 
Sbjct: 164 YLQNMIVHLYASCGEMGEARLLFEKMPQR-DVVTWNIMIA 202


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/339 (38%), Positives = 208/339 (61%), Gaps = 8/339 (2%)

Query: 3   KQGKEVHAKVITLGL---CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           + G+E+H  V+  G+    G+ V+ S+L DMY KCG VD++ RVFD+M  +++VS +A++
Sbjct: 181 RAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMV 240

Query: 60  QGYCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           + Y   G      R+F  M        + F++  VLRACA  A    G++VH +  +   
Sbjct: 241 ERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGT 300

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
                 ESAL+ +Y+KCG +  A ++F  M   +L++W ++ISG+AQNG+ EEALR FD 
Sbjct: 301 GDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDM 360

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
               G KPDHV+F+GVLSAC+H GL+D+G + F S+ ++Y I+   +HY C++DLL R+G
Sbjct: 361 FLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSG 420

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
             E AE +I N   + +  LW  LLG C   +N  +A R A+ + E++P+   +YV L N
Sbjct: 421 QFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLAN 480

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +Y +VG +++   +R +M+  G+ KMP  SWIE   +++
Sbjct: 481 IYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVH 519



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 101/181 (55%), Gaps = 11/181 (6%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-------IDLFSFGIVLRACAG 95
           +FD+M +++  + SAL+ GY + G  E+ + ++R M+E        + F+    L A A 
Sbjct: 117 LFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAA 176

Query: 96  LAALRLGKEVHCQYIRR---SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
               R G+E+HC  +RR   +   D ++ SAL D+YAKCG VD A ++F +MPVR+ ++W
Sbjct: 177 ARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSW 236

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEG-GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
            +M+  +   GRG E  R+F  M    G +P+  ++ GVL AC+   +   GR+    M 
Sbjct: 237 TAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMA 296

Query: 212 K 212
           K
Sbjct: 297 K 297


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/335 (40%), Positives = 206/335 (61%), Gaps = 10/335 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK + + V   G   N+ + ++LVDMY KCG +  + ++FD M  K+ +  + ++ G
Sbjct: 275 LELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGG 334

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS---- 113
           YC    +E  + +F    RE    +  +F  VL ACA L AL LGK VH  YI ++    
Sbjct: 335 YCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHA-YIDKNLKGT 393

Query: 114 -GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               +V + ++++ +YAKCGCV+ A Q+F  M  R+L +WN+MISG A NG  E AL +F
Sbjct: 394 GNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLF 453

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
           ++M   G +PD ++F+GVLSAC+  G ++ G ++F+SM K+Y I PK++HY CM+DLL R
Sbjct: 454 EEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLAR 513

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
           +G  +EA+ L+ N +   D ++W  LL AC         E VA+++ EL+P+   +YVLL
Sbjct: 514 SGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLL 573

Query: 293 DNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            N+Y   GRW+D  KIRT +   G+KK+PG + IE
Sbjct: 574 SNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIE 608



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 11/261 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           + V  ++L+  Y   G VD++ R+FD++  K+ VS +A++ GY Q+G FE  +  F  M+
Sbjct: 192 DAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQ 251

Query: 80  EIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           E D+     +   VL AC  L +L LGK +      R   K++ + +ALVD+Y+KCG + 
Sbjct: 252 EADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIG 311

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A ++F  M  +++I WN+MI G+      EEAL +F+ M      P+ V+F+ VL AC+
Sbjct: 312 TARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACA 371

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEH---YNCMVDLLGRAGLLEEAETLIENADCRHDS 252
            +G +D G+   A + K  +    + +   +  ++ +  + G +E AE +  +   R  +
Sbjct: 372 SLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLA 431

Query: 253 SLWEVLLGACTTFRNAHVAER 273
           S W  ++       N H AER
Sbjct: 432 S-WNAMISGLAM--NGH-AER 448



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 133/295 (45%), Gaps = 41/295 (13%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESH--RVFDKM--LKKNSVSSSALLQG 61
           K++H+ +I  GL   +  +S L++        D S+   +F  +     N    + L++ 
Sbjct: 42  KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIR------ 111
           +  T    S + +F +M    L+    +F  + ++CA   A    K++H   ++      
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLH 161

Query: 112 -------------------------RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
                                    +S  +D +  +AL+  Y   G VD A ++F ++P 
Sbjct: 162 PHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPA 221

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +++++WN+MI+G+ Q+GR EEAL  F  M E    P+  + + VLSAC H+  ++ G K 
Sbjct: 222 KDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELG-KW 280

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
             S  ++      ++  N +VD+  + G +  A  L +  + + D  LW  ++G 
Sbjct: 281 IGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDK-DVILWNTMIGG 334


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            LKQGK++HA V+  G   ++ V S ++DMY KCG ++ + RVF ++   + V+ + ++ G
Sbjct: 1154 LKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISG 1213

Query: 62   YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
              + G  E  +  + +M     + D ++F  +++AC+ L AL  G+++H   ++ +   D
Sbjct: 1214 CVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFD 1273

Query: 118  VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
              + ++LVD+YAKCG ++ A  +F +   R + +WN+MI G AQ+G  +EAL+ F  M  
Sbjct: 1274 PFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKS 1333

Query: 178  GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             G  PD V+FIGVLSACSH GL+    ++F SM K Y I+P+IEHY+C+VD L RAG +E
Sbjct: 1334 RGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIE 1393

Query: 238  EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            EAE +I +      +S++  LL AC    +    +RVA+K++ L+P    +YVLL NVY 
Sbjct: 1394 EAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYA 1453

Query: 298  AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A  +W +    R +M+   VKK PG SW++  +K++
Sbjct: 1454 AANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVH 1489



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 143/272 (52%), Gaps = 8/272 (2%)

Query: 5    GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
              ++HA  +  G+  +  V ++L+D+Y K G ++E+  +F      +  S +A++ GY  
Sbjct: 1056 ATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIV 1115

Query: 65   TGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            +GDF   +R++  M+E    S  I L    +A  GL  L+ GK++H   ++R    D+ +
Sbjct: 1116 SGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFV 1175

Query: 121  ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
             S ++D+Y KCG ++ A ++F ++P  + + W +MISG  +NG+ E AL  +  M     
Sbjct: 1176 TSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKV 1235

Query: 181  KPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +PD  +F  ++ ACS +  +++GR+  A++ K      P +     +VD+  + G +E+A
Sbjct: 1236 QPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV--MTSLVDMYAKCGNIEDA 1293

Query: 240  ETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
              L +  + R  +S W  ++       NA  A
Sbjct: 1294 RGLFKRTNTRRIAS-WNAMIVGLAQHGNAKEA 1324



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 133/267 (49%), Gaps = 9/267 (3%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L+ GK++H  V+  GL   V V + L++MY K G V  +  VF +M + + +S + ++ G
Sbjct: 951  LELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISG 1010

Query: 62   YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGL-AALRLGKEVHCQYIRRSGCK 116
               +G  E  + +F    R+    D F+   VLRAC+ L     L  ++H   ++     
Sbjct: 1011 CTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVL 1070

Query: 117  DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            D  + +AL+D+Y+K G ++ A  +F+     +L +WN+++ G+  +G   +ALR++  M 
Sbjct: 1071 DSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQ 1130

Query: 177  EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E G + D ++ +    A   +  + +G++ H   + + + +   +   + ++D+  + G 
Sbjct: 1131 ESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVT--SGVLDMYLKCGE 1188

Query: 236  LEEAETLIENADCRHDSSLWEVLLGAC 262
            +E A  +        D + W  ++  C
Sbjct: 1189 MESARRVFSEIPSPDDVA-WTTMISGC 1214



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 7/181 (3%)

Query: 82   DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQI 140
            D  +F ++L   AGL  L LGK++H   + RSG   V+ + + L+++Y K G V  A  +
Sbjct: 934  DGLTFVVMLTVVAGLNCLELGKQIH-GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSV 992

Query: 141  FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM--G 198
            F QM   +LI+WN+MISG   +G  E ++ +F  +      PD  +   VL ACS +  G
Sbjct: 993  FGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGG 1052

Query: 199  LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
                 + H  +M     +   +     ++D+  + G +EEAE L  N D   D + W  +
Sbjct: 1053 YYLATQIHACAMKAGVVLDSFVS--TALIDVYSKRGKMEEAEFLFVNQDG-FDLASWNAI 1109

Query: 259  L 259
            +
Sbjct: 1110 M 1110



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 7/193 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS--VSSSALL 59
           L  GK  HA+++T G   +  V ++L+ MY KCG +  + ++FD     N   V+ +A+L
Sbjct: 672 LSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAIL 731

Query: 60  QGYCQTGD-----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
                  D     F     + R +      +   V + C   A+    + +H   ++   
Sbjct: 732 SALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGL 791

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             DV +  ALV++YAK G +  A  +F  M VR+++ WN M+  +       EA+ +F +
Sbjct: 792 QWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSE 851

Query: 175 MTEGGTKPDHVSF 187
               G +PD V+ 
Sbjct: 852 FHRTGFRPDDVTL 864



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 113/260 (43%), Gaps = 29/260 (11%)

Query: 6    KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
            + +H   + +GL  +V V  +LV++Y K GL+ E+  +FD M  ++ V  + +++ Y  T
Sbjct: 780  ESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDT 839

Query: 66   G-DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
              ++E+++ +F E          + LR  +                R   CK  I+E   
Sbjct: 840  CLEYEAML-LFSEFHRTGFRPDDVTLRTLS----------------RVVKCKKNILELKQ 882

Query: 125  VDLYAKCGCVDFAHQIFL-QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
               YA         ++F+      ++I WN  +S F Q G   EA+  F DM       D
Sbjct: 883  FKAYAT--------KLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACD 934

Query: 184  HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
             ++F+ +L+  + +  ++ G K    +     +   +   NC++++  +AG +  A ++ 
Sbjct: 935  GLTFVVMLTVVAGLNCLELG-KQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVF 993

Query: 244  ENADCRHDSSLWEVLLGACT 263
               +   D   W  ++  CT
Sbjct: 994  GQMN-EVDLISWNTMISGCT 1012



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 13/180 (7%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--V 146
           +LR     + L LGK  H + +      D  + + L+ +YAKCG +  A ++F   P   
Sbjct: 662 ILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTN 721

Query: 147 RNLITWNSMISGFAQNG-RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           R+L+TWN+++S  A +  +  +   +F  +          +   V   C    L+     
Sbjct: 722 RDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMC----LLSASPS 777

Query: 206 HFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
              S+   Y +K  ++        +V++  + GL+ EA  L +    R D  LW V++ A
Sbjct: 778 ASESL-HGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVR-DVVLWNVMMKA 835


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 202/330 (61%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+H  ++ +GL  + VV S+L DMYGKCG + E+  +FDK + ++ VS +A++  
Sbjct: 238 LHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDR 297

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  E    +F ++ +  +    F+F  VL ACA  AA  LGK+VH    R      
Sbjct: 298 YFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPS 357

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               S LV +Y KCG +  A ++F  MP  +L++W S+ISG+AQNG+ +EAL+ F+ + +
Sbjct: 358 SFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLK 417

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GT+PDH++F+GVLSAC+H GL+D+G ++F S+ +++ +    +HY C++DLL R+G L+
Sbjct: 418 SGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQ 477

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE +I+      D  LW  LLG C    N  +A+R A+ + E++P+   +Y  L N+Y 
Sbjct: 478 EAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYA 537

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             G W    ++R +M   GV K PG SWIE
Sbjct: 538 TAGLWGGVAEVRKVMDARGVVKKPGLSWIE 567



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 38/294 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G +VHA   T G    VV+ + ++DMY KC  +  + R+FD+M +++  S + ++ G
Sbjct: 105 LDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISG 164

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----------------VLRAC------------ 93
           Y + G  +   ++F +M E D FS+                  + RA             
Sbjct: 165 YAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFT 224

Query: 94  --------AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
                   A + +L LGKE+H   +R     D ++ SAL D+Y KCG +  A  IF +  
Sbjct: 225 MSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTV 284

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R++++W +MI  + + GR EE   +F D+ + G  P+  +F GVL+AC+     + G++
Sbjct: 285 DRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQ 344

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
               MT+     P     + +V +  + G ++ A  +  N   R D   W  L+
Sbjct: 345 VHGYMTR-IGFDPSSFAASTLVHMYTKCGNIKNARRVF-NGMPRPDLVSWTSLI 396



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 63/115 (54%)

Query: 63  CQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
           C+       I+I   ++     ++  +L+ C  L AL  G +VH           V+I +
Sbjct: 69  CEQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISN 128

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++D+Y KC  +  A ++F +M  R+L +WN MISG+A+ GR +EA ++FD MTE
Sbjct: 129 RILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTE 183


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 204/333 (61%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH + +   L  NV V S+LVDMYGKC    E++RVF+ + +KN VS +A++  Y Q
Sbjct: 233 GSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQ 292

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              FE  +++F +ME      + F++ + L +CAGLA L+ G  +    ++      + +
Sbjct: 293 NELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPV 352

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+++Y+K G V+ A ++FL MP R++++WNS+I G+A +GR  EA+  F DM     
Sbjct: 353 CNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEE 412

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P +V+FIGVLSAC+ +GL+D G  +   M KE  +KP  EHY CMV LL R G L+EAE
Sbjct: 413 VPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAE 472

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             IE+     D   W  LL +C  +RN  +  RVA++I +LKP    +YVLL N+Y    
Sbjct: 473 RFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKAN 532

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           RW+   K+R LM+  GV+K PG SWI+  S+++
Sbjct: 533 RWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVH 565



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 164/326 (50%), Gaps = 12/326 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++ H   I  GL  +  V S+++ MY +C  +DE+ +VFD +   N  + ++++ G+  
Sbjct: 132 GRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLD 191

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +    I R M     + D  S+  VL  CA    + LG +VH Q ++R    +V +
Sbjct: 192 RGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYV 251

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVD+Y KC     A+++F  +P +N+++W ++++ + QN   E+AL++F DM   G 
Sbjct: 252 GSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGV 311

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTK--EYRIKPKIEHYNCMVDLLGRAGLLEE 238
           +P+  ++   L++C+ +  +  G    A   K   + + P     N ++++  ++G +E+
Sbjct: 312 RPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVC---NALMNMYSKSGSVED 368

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A  +  +  CR   S   +++G     R     E     +   +   +++++ + +    
Sbjct: 369 ARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQ 428

Query: 299 VGRWNDAF-KIRTLMKYSGVKKMPGK 323
           +G  ++ F  +  +MK  GVK  PGK
Sbjct: 429 LGLVDEGFYYLNIMMKEVGVK--PGK 452



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 129/263 (49%), Gaps = 4/263 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VHA+V+      +VV  ++L+ +Y KCG +  + +VFD M  +N VS + L+ G
Sbjct: 32  LSLGKAVHARVVRAARF-DVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSG 90

Query: 62  YCQTGDFESVIRIFREME-EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           Y  +G     + + R  +  ++ +     + A A + +  +G++ H   I+    +   +
Sbjct: 91  YASSGRHRDALALLRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYV 150

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SA++ +Y +C  +D A ++F  +   N+  +NSMI+GF   G+ + +  I   M     
Sbjct: 151 CSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVG 210

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           + DHVS++ VL  C+    +  G +      K  R++  +   + +VD+ G+     EA 
Sbjct: 211 QWDHVSYVAVLGHCASTKEVVLGSQVHTQALKR-RLELNVYVGSALVDMYGKCDFPHEAN 269

Query: 241 TLIENADCRHDSSLWEVLLGACT 263
            + E    ++  S W  ++ A T
Sbjct: 270 RVFEVLPEKNIVS-WTAIMTAYT 291



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G  + A  +  G  G + V ++L++MY K G V+++ RVF  M  ++ VS ++++ G
Sbjct: 331 LKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIG 390

Query: 62  YCQTGDFESVIRIFREM---EEIDLF-SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     +  F +M   EE+  + +F  VL ACA L  +  G       ++  G K 
Sbjct: 391 YAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKP 450

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMIS 157
                + +V L  + G +D A +      +  +++ W S++S
Sbjct: 451 GKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLS 492


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 200/337 (59%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H  +I   +  ++ V SSL+D+Y KCG +  +  VF  M K N VS + ++ G
Sbjct: 324 LQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISG 383

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G +   + IF +M +     D  +F  VL AC+ LA L  GKE+H   I      +
Sbjct: 384 YVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEIN 443

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++  AL+D+YAKCG VD A  IF Q+P R+ ++W SMI+ +  +G+  EAL++F+ M +
Sbjct: 444 EVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQ 503

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+F+ +LSACSH GL+D G  +F  M  EY  KP +EHY+C++DLLGR G L 
Sbjct: 504 SDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLR 563

Query: 238 EA-ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EA E L    D R D  L   L  AC   +   + E++ + ++E  PD   +Y++L N+Y
Sbjct: 564 EAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMY 623

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            +V +W++  K+R  +K  G+KK PG SWIE   +++
Sbjct: 624 ASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIH 660



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/289 (34%), Positives = 164/289 (56%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GKE+H +++  G   +  V S+LVDMYGKCG ++ +  VF+++ +KN VS ++++ G
Sbjct: 223 LERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAG 282

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   GD +S I +FR M+E      L +   +L AC+    L+LGK +H   IR     D
Sbjct: 283 YSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEAD 342

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+L+DLY KCG +  A  +F  MP  N+++WN MISG+ + G   EAL IF DM +
Sbjct: 343 IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRK 402

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F  VL ACS + ++++G K   +   E +++        ++D+  + G ++
Sbjct: 403 AGVKPDAITFTSVLPACSQLAVLEKG-KEIHNFIIESKLEINEVVMGALLDMYAKCGAVD 461

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           EA  +      R D   W  ++ A  +   A  A ++ +K+ +   KPD
Sbjct: 462 EALHIFNQLPER-DFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPD 509



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 144/265 (54%), Gaps = 6/265 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+  GK VH  VI  G   +VVV SS V MY KC + +++ ++FD+M +++  S + ++ 
Sbjct: 121 RVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVIS 180

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y Q G  E  + +F EM+    + D  +   V+ +CA L  L  GKE+H + +R     
Sbjct: 181 CYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL 240

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + SALVD+Y KCGC++ A ++F Q+  +N+++WNSMI+G++  G  +  + +F  M 
Sbjct: 241 DGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMD 300

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E G +P   +   +L ACS    +  G+     + +  R++  I   + ++DL  + G +
Sbjct: 301 EEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRN-RVEADIFVNSSLIDLYFKCGNI 359

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
             AE + +N   + +   W V++  
Sbjct: 360 GSAENVFQNMP-KTNVVSWNVMISG 383



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 147/268 (54%), Gaps = 12/268 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LKQGK +H K+++LGL  N+ +  SL+++Y  C L   +  VF  +     ++    L  
Sbjct: 19  LKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMA 78

Query: 62  YCQTGDFESV--IRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
            C T +F  +  + +F  +        D F++  VL+AC+GL  +  GK VH   I+   
Sbjct: 79  AC-TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGF 137

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             DV++ S+ V +YAKC   + A ++F +MP R++ +WN++IS + Q+G+ E+AL +F++
Sbjct: 138 AMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEE 197

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           M   G KPD V+   V+S+C+ +  ++RG++ H   +   + +   +   + +VD+ G+ 
Sbjct: 198 MKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS--SALVDMYGKC 255

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGA 261
           G LE A+ + E    R +   W  ++  
Sbjct: 256 GCLEMAKEVFEQIQ-RKNVVSWNSMIAG 282



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF--LQMPV 146
           +L+ C     L+ GK +H + +      ++ +  +L++LY  C     A  +F  ++ P+
Sbjct: 9   LLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL 68

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDHVSFIGVLSACSHMGLIDRGR 204
            ++  WN +++   +N    E L +F  +      KPD  ++  VL ACS +G +  G+
Sbjct: 69  -DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGK 126


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 134/331 (40%), Positives = 208/331 (62%), Gaps = 6/331 (1%)

Query: 11  KVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFES 70
           K+ +   C + +  +S++  Y KCG ++++  +FD M  K++VS SA++ GY Q   F  
Sbjct: 345 KLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTE 404

Query: 71  VIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALV 125
            + +F+EM+    + D      V+ AC  LAAL  GK +H  YIR++G K ++I+ + L+
Sbjct: 405 TLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHA-YIRKNGLKINIILGTTLI 463

Query: 126 DLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185
           ++Y K GCV+ A ++F  +  + + TWN++I G A NG  +++L+ F +M E G  P+ +
Sbjct: 464 NMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEI 523

Query: 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
           +F+ VL AC HMGL+D G +HF SM +E++I P I+HY CMVDLLGRAG+L+EAE LIE+
Sbjct: 524 TFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIES 583

Query: 246 ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305
                D S W  LLGAC  + +    ER+ +K++EL PD     VLL N+Y + G W D 
Sbjct: 584 MPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDV 643

Query: 306 FKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            ++R +M+  GV K PG S IEA+ +++  L
Sbjct: 644 LEVRGMMRQHGVVKTPGCSMIEAHGRVHEFL 674



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 142/276 (51%), Gaps = 36/276 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV+  +S++ ++GK G V+E+ ++F++M +K+ VS SAL+  Y Q   +E  + +F+EM 
Sbjct: 222 NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMN 281

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVH------------------------CQYI- 110
                +D      VL AC+ L  +  GK VH                        C+ + 
Sbjct: 282 ANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVV 341

Query: 111 ------RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
                   S C D I  ++++  Y KCG ++ A  +F  MP ++ ++W++MISG+AQ  R
Sbjct: 342 TAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDR 401

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
             E L +F +M   GTKPD    + V+SAC+H+  +D+G+   A + K   +K  I    
Sbjct: 402 FTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKN-GLKINIILGT 460

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            ++++  + G +E+A  + +  + +  S+   ++LG
Sbjct: 461 TLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILG 496



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 100/200 (50%), Gaps = 35/200 (17%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +   V+ +G   +V ++++L++MY  CG + ++ +VFD     + VS +++L GY  
Sbjct: 145 GKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVL 204

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
            G+ E    ++  M E                                   ++VI  +++
Sbjct: 205 VGNVEEAKDVYDRMPE-----------------------------------RNVIASNSM 229

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           + L+ K G V+ A ++F +M  ++L++W+++IS + QN   EEAL +F +M   G   D 
Sbjct: 230 IVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDE 289

Query: 185 VSFIGVLSACSHMGLIDRGR 204
           V  + VLSACS + ++  G+
Sbjct: 290 VVVLSVLSACSRLLVVITGK 309



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 94/183 (51%), Gaps = 6/183 (3%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD--ESHRVFDKMLKKNSVSSSAL 58
            +KQ  ++ +++I  G   +    S L+    +   ++  +S+++F  +   N    + +
Sbjct: 38  NIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNTM 97

Query: 59  LQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           ++GY Q       I +++ M E     D +++ I+ ++C+   A   GK +    ++   
Sbjct: 98  MKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGF 157

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             DV I++ L+++YA CG +  A ++F    V ++++WNSM++G+   G  EEA  ++D 
Sbjct: 158 DSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDR 217

Query: 175 MTE 177
           M E
Sbjct: 218 MPE 220



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 8/197 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QGK +HA +   GL  N+++ ++L++MY K G V+++  VF  + +K   + +AL+ G
Sbjct: 437 LDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILG 496

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  +  ++ F EM+E     +  +F  VL AC  +  +  G       I+      
Sbjct: 497 LAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGP 556

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDDM 175
            I     +VDL  + G +  A ++   MP+  ++ TW +++    + G  E   RI   +
Sbjct: 557 NIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKL 616

Query: 176 TEGGTKPDHVSFIGVLS 192
            E    PDH  F  +LS
Sbjct: 617 VE--LHPDHDGFNVLLS 631


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/339 (38%), Positives = 208/339 (61%), Gaps = 8/339 (2%)

Query: 3   KQGKEVHAKVITLGL---CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           + G+E+H  V+  G+    G+ V+ S+L DMY KCG VD++ RVFD+M  +++VS +A++
Sbjct: 181 RAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMV 240

Query: 60  QGYCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           + Y   G      R+F  M        + F++  VLRACA  A    G++VH +  +   
Sbjct: 241 ERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGT 300

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
                 ESAL+ +Y+KCG +  A ++F  M   +L++W ++ISG+AQNG+ EEALR FD 
Sbjct: 301 GDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDM 360

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
               G KPDHV+F+GVLSAC+H GL+D+G + F S+ ++Y I+   +HY C++DLL R+G
Sbjct: 361 FLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSG 420

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
             E AE +I N   + +  LW  LLG C   +N  +A R A+ + E++P+   +YV L N
Sbjct: 421 QFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLAN 480

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +Y +VG +++   +R +M+  G+ KMP  SWIE   +++
Sbjct: 481 IYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVH 519



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 101/181 (55%), Gaps = 11/181 (6%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-------IDLFSFGIVLRACAG 95
           +FD+M +++  + SAL+ GY + G  E+ + ++R M+E        + F+    L A A 
Sbjct: 117 LFDRMPQRDHFAWSALVSGYARHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAA 176

Query: 96  LAALRLGKEVHCQYIRR---SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
               R G+E+HC  +RR   +   D ++ SAL D+YAKCG VD A ++F +MPVR+ ++W
Sbjct: 177 ARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSW 236

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEG-GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
            +M+  +   GRG E  R+F  M    G +P+  ++ GVL AC+   +   GR+    M 
Sbjct: 237 TAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMA 296

Query: 212 K 212
           K
Sbjct: 297 K 297



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%)

Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           A ++F +MP R+   W++++SG+A++G+ E AL ++  M E
Sbjct: 114 ARELFDRMPQRDHFAWSALVSGYARHGQPEAALALYRRMQE 154


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 207/333 (62%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QG+++H++V   G   +V + ++LV++Y +CG   E+  +F+ +  K+ ++ + ++ G
Sbjct: 462 MRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSG 521

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G +E  + +F +M +     ++F+F   + A A LA ++ GK++H   I+     +
Sbjct: 522 FAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSE 581

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ LY KCG ++ A   F +M  RN ++WN++I+  +Q+G G EAL +FD M +
Sbjct: 582 TEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQ 641

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+ V+FIGVL+ACSH+GL++ G  +F SM+ E+ I P+ +HY C+VD+LGRAG L+
Sbjct: 642 EGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLD 701

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A   +E      ++ +W  LL AC   +N  + E  AK ++EL+P    SYVLL N Y 
Sbjct: 702 RARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYA 761

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
             G+W     +R +MK  GV+K PG+SWIE  +
Sbjct: 762 VTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKN 794



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 146/258 (56%), Gaps = 6/258 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +HAK IT GL  + +  + L+D+Y K GLV  + RVF+++  +++VS  A+L GY + G 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 68  FESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            E  + ++ +M    +    +    VL AC   A    G+ VH Q  ++  C + ++ +A
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNA 183

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L+ LY + G +  A ++F +MP  + +T+N++IS  AQ G GE AL IF++M   G  PD
Sbjct: 184 LIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPD 243

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
            V+   +L+AC+ +G +++G++  + + K   + P       ++DL  + G++ EA  + 
Sbjct: 244 CVTIASLLAACASIGDLNKGKQLHSYLLKA-GMSPDYIIEGSLLDLYVKCGVIVEALEIF 302

Query: 244 ENADCRHDSSLWEVLLGA 261
           ++ D R +  LW ++L A
Sbjct: 303 KSGD-RTNVVLWNLMLVA 319



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 148/264 (56%), Gaps = 8/264 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H   I  G   ++ V   L+DMY K G +D++ R+ + +  K+ VS ++++ GY Q
Sbjct: 364 GEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQ 423

Query: 65  TGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               +  +  F++M+   ++   I     + ACAG+ A+R G+++H +        DV I
Sbjct: 424 HEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSI 483

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV+LYA+CG    A  +F  +  ++ ITWN M+SGFAQ+G  EEAL +F  M + G 
Sbjct: 484 WNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGV 543

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           K +  +F+  +SA +++  I +G++  A++ K      + E  N ++ L G+ G +E+A+
Sbjct: 544 KYNVFTFVSSISASANLADIKQGKQIHATVIKT-GCTSETEVANALISLYGKCGSIEDAK 602

Query: 241 -TLIENADCRHDSSLWEVLLGACT 263
               E ++  H S  W  ++ +C+
Sbjct: 603 MQFFEMSERNHVS--WNTIITSCS 624



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 132/248 (53%), Gaps = 7/248 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK++H+ ++  G+  + ++E SL+D+Y KCG++ E+  +F    + N V  + +L  
Sbjct: 260 LNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVA 319

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  D      +F +M    +    F++  +LR C     + LG+++H   I+     D
Sbjct: 320 YGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESD 379

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + +   L+D+Y+K G +D A +I   +  +++++W SMI+G+ Q+   +EAL  F DM  
Sbjct: 380 MYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQL 439

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G  PD++     +SAC+ +  + +G++ H       Y     I  +N +V+L  R G  
Sbjct: 440 FGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSI--WNALVNLYARCGRS 497

Query: 237 EEAETLIE 244
           +EA +L E
Sbjct: 498 KEAFSLFE 505



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 145/299 (48%), Gaps = 15/299 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            +QG+ VHA+V   G C   VV ++L+ +Y + G +  + RVF +M   + V+ + L+  
Sbjct: 159 FEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISR 218

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G+ ES + IF EM       D  +   +L ACA +  L  GK++H   ++     D
Sbjct: 219 HAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPD 278

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            IIE +L+DLY KCG +  A +IF      N++ WN M+  + Q     ++  +F  M  
Sbjct: 279 YIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVA 338

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G +P+  ++  +L  C++ G I+ G + H  S+   +     +     ++D+  + G L
Sbjct: 339 AGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVS--GVLIDMYSKYGWL 396

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           ++A  ++E  + + D   W       T+    +V     K+ +E   D  L  +  DN+
Sbjct: 397 DKARRILEVLEAK-DVVSW-------TSMIAGYVQHEFCKEALETFKDMQLFGIWPDNI 447


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 198/311 (63%), Gaps = 4/311 (1%)

Query: 23  VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME--- 79
           V ++LVD Y K      +  +FD+M +++ V+ ++LL G  ++G  ++ +R++R+M    
Sbjct: 79  VANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMVASG 138

Query: 80  -EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
            E D +     L +CAG   L LG+ VH   +R      + + ++LV +YAK G +  A 
Sbjct: 139 VEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREAR 198

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F    +R  +TW ++I G+AQNGRGEE+L+++ +M   G +PD+V+FIG+L ACSH G
Sbjct: 199 KVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAG 258

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           L+D GR HF SM  ++ I P  +HY CMVD+LGRAG L+EA  L++ +  + D+++W+ L
Sbjct: 259 LVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKAL 318

Query: 259 LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
           LGAC T RNA +AER A+ +  L P   + Y++L N+Y    RW+D  +IRTLMK  G+ 
Sbjct: 319 LGACRTHRNAELAERAAEMVWRLDPTDAVPYIMLSNLYSRERRWSDVARIRTLMKSRGIA 378

Query: 319 KMPGKSWIEAN 329
           K PG SW+ A+
Sbjct: 379 KEPGCSWVVAS 389



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 99/208 (47%), Gaps = 6/208 (2%)

Query: 47  MLKKNSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRL 101
           M+    V+ +A +    + G  +  + +F EM        D ++F  +L + A L     
Sbjct: 1   MVVPPGVAYNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAA 60

Query: 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
              +H   +R      + + +ALVD YAK      A  +F +MP R+++TW S+++G A+
Sbjct: 61  ADALHALLLRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLAR 120

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
           +G  + ALR++ DM   G +PD       LS+C+    ++ G+   A+  +   ++P + 
Sbjct: 121 SGSHDAALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVR-LGLEPFLS 179

Query: 222 HYNCMVDLLGRAGLLEEAETLIENADCR 249
             N +V +  + G L EA  + +    R
Sbjct: 180 VGNSLVSMYAKTGSLREARKVFDATRLR 207



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 41/199 (20%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ VHA  + LGL   + V +SLV MY K G + E+ +VFD    +  V+ +AL+ G
Sbjct: 159 LELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREARKVFDATRLRCPVTWTALIVG 218

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVII 120
           Y Q G  E  ++++ EM                          VH      SGC+ D + 
Sbjct: 219 YAQNGRGEESLQVYAEM--------------------------VH------SGCRPDYVT 246

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLIT-----WNSMISGFAQNGRGEEALRIFDDM 175
              L+   +  G VD     F  M   + IT     +  M+    + GR +EA+ + D  
Sbjct: 247 FIGLLFACSHAGLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQS 306

Query: 176 TEGGTKPDHVSFIGVLSAC 194
           T    K D   +  +L AC
Sbjct: 307 T---MKLDATVWKALLGAC 322


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 134/334 (40%), Positives = 208/334 (62%), Gaps = 6/334 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RL +G+E+H++++ +GL     + + L+ +Y  CG +D +  +FD+M + +S S S ++ 
Sbjct: 122 RLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVS 181

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q G     +++FREM+      D F+   V+  C  L AL LGK VH  Y+ + G K
Sbjct: 182 GYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVH-SYMDKEGVK 240

Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV++ +ALV +Y+KCG +D A ++F  M  R++  W++MI+G+A +G GE+AL++FD M
Sbjct: 241 IDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAM 300

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
               T P+ V+F  VLSACSH GL+++G + F +M  EY+I P+I+HY CMVDL  RAG+
Sbjct: 301 KRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGM 360

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           +  A   I+      +  LW  LLGAC T     + E +++KI++L P    +YVL+ NV
Sbjct: 361 VGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNV 420

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           Y ++GRW+   ++R+LMK    KK  G S IE N
Sbjct: 421 YASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEIN 454



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 131/262 (50%), Gaps = 9/262 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           Q   V A +       + ++ESS V + G    V  +HR+F      N    + +++GY 
Sbjct: 27  QAHMVRANLTQDTFLTSKLIESSAVTLSGH---VAYAHRIFSCTHHPNLFMWNTIIRGYS 83

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            +    + I ++R+M       + ++FG VL+AC  L  L  G+E+H Q ++     +  
Sbjct: 84  ISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETP 143

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + + L+ LYA CGC+D+A  +F +MP  +  +W++M+SG+AQNG+  EAL++F +M    
Sbjct: 144 LVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAEN 203

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
              D  +   V+  C  +G +D G+   + M KE  +K  +     +V +  + G L+ A
Sbjct: 204 VSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKE-GVKIDVVLGTALVGMYSKCGSLDNA 262

Query: 240 ETLIENADCRHDSSLWEVLLGA 261
             + +    R D + W  ++  
Sbjct: 263 LKVFQGMAER-DVTAWSTMIAG 283


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/330 (39%), Positives = 205/330 (62%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H+ V+  GL  NV V ++++D+Y KCG ++ S ++F+++  +N V+ + ++ G
Sbjct: 354 LDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVG 413

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q GD E  + +F  M E D+     ++  VLRA A LAAL  G ++H   I+    KD
Sbjct: 414 YVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKD 473

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ ++L+D+YAKCG ++ A   F +M  R+ ++WN+MI G++ +G   EAL +FD M  
Sbjct: 474 TVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQH 533

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP+ ++F+GVLSACS+ GL+ +G+ HF SM+K+Y IKP IEHY CMV LLGR G  +
Sbjct: 534 TDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFD 593

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI     +    +W  LLGAC   +   +    A+ ++E++P    ++VLL N+Y 
Sbjct: 594 EAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYA 653

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             GRW++   +R  M+   V+K PG SW+E
Sbjct: 654 TAGRWDNVAFVRKYMQKKKVRKEPGLSWVE 683



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 140/259 (54%), Gaps = 6/259 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK VH   +      ++ V  +L+++Y K G + ++ R+F++M K + +  S ++  Y Q
Sbjct: 256 GKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQ 315

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +   +  + +F  M +  +    F+F  VL+ACA   +L LGK++H   ++     +V +
Sbjct: 316 SDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFV 375

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A++D+YAKCG ++ + ++F ++P RN +TWN++I G+ Q G GE A+ +F  M E   
Sbjct: 376 SNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDM 435

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +P  V++  VL A + +  ++ G +   S+T +          N ++D+  + G + +A 
Sbjct: 436 QPTEVTYSSVLRASASLAALEPGLQ-IHSLTIKTMYNKDTVVANSLIDMYAKCGRINDAR 494

Query: 241 TLIENADCRHDSSLWEVLL 259
              +  + R + S W  ++
Sbjct: 495 LTFDKMNKRDEVS-WNAMI 512



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 164/333 (49%), Gaps = 15/333 (4%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +HA V  LG   +  V ++L+D Y   G VD +  VFD +  K+ VS + ++  Y +   
Sbjct: 158 LHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCF 217

Query: 68  FESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
           +E  +++F +M     + + F+    L++C GL A  +GK VH   ++     D+ +  A
Sbjct: 218 YEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIA 277

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L++LYAK G +  A ++F +MP  +LI W+ MI+ +AQ+ R +EAL +F  M +    P+
Sbjct: 278 LLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPN 337

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
           + +F  VL AC+    +D G K   S   ++ +   +   N ++D+  + G +E +  L 
Sbjct: 338 NFTFASVLQACASSVSLDLG-KQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLF 396

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA---VG 300
           E    R+D + W  ++       +   A  +   ++E   D   + V   +V RA   + 
Sbjct: 397 EELPDRNDVT-WNTIIVGYVQLGDGERAMNLFTHMLE--HDMQPTEVTYSSVLRASASLA 453

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
                 +I +L     +K M  K  + ANS ++
Sbjct: 454 ALEPGLQIHSLT----IKTMYNKDTVVANSLID 482



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 108/204 (52%), Gaps = 4/204 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H  ++  G   ++  ++ L++ Y +   + ++ ++FD+M + N++S   L QGY +
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 65  TGDFES----VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              F      ++RIF+E  E++ F F  +L+    +    L   +H    +     D  +
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D Y+  G VD A  +F  +  +++++W  M++ +A+N   EE+L++F+ M   G 
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGY 233

Query: 181 KPDHVSFIGVLSACSHMGLIDRGR 204
           KP++ +  G L +C  +   + G+
Sbjct: 234 KPNNFTISGALKSCLGLEAFNVGK 257


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 134/333 (40%), Positives = 203/333 (60%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK+V A ++  G   +  V ++L+  Y K G + ++  VFDKM  ++ VS + ++ G
Sbjct: 649 LDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAG 708

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  ++ +    +M+E D+    FSF  +L AC+  +AL  GK VH + ++R    D
Sbjct: 709 YAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGD 768

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+ +YAKCG    A ++F  +  +N++TWN+MI+ +AQ+G   +AL  F+ M +
Sbjct: 769 VRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEK 828

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD  +F  +LSAC+H GL+  G + F+SM  EY + P IEHY C+V LLGRA   +
Sbjct: 829 EGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQ 888

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAETLI       D+++WE LLGAC    N  +AE  A   ++L       Y+LL NVY 
Sbjct: 889 EAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYA 948

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           A GRW+D  KIR +M+  G++K PG+SWIE ++
Sbjct: 949 AAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDN 981



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 150/267 (56%), Gaps = 8/267 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H+ +   G   +V + ++L+ MY +CG + ++  +F  M K++ +S +A++ G
Sbjct: 346 LEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAG 405

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y +  D    +R++++M+   +     +F  +L ACA  +A   GK +H + I RSG K 
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIH-EDILRSGIKS 464

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + +AL+++Y +CG +  A  +F     R++I+WNSMI+G AQ+G  E A ++F +M 
Sbjct: 465 NGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQ 524

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               +PD+++F  VLS C +   ++ G++    +T E  ++  +   N ++++  R G L
Sbjct: 525 NEELEPDNITFASVLSGCKNPEALELGKQIHGRIT-ESGLQLDVNLGNALINMYIRCGSL 583

Query: 237 EEAETLIENADCRHDSSLWEVLLGACT 263
           ++A  +  +   R D   W  ++G C 
Sbjct: 584 QDARNVFHSLQHR-DVMSWTAMIGGCA 609



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 146/289 (50%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK +H   +  GL  ++ V ++LV M  +CG VD + + F     ++ V  +AL+  
Sbjct: 245 LDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAA 304

Query: 62  YCQTGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G     FE   R+  +   ++  ++  +L AC+   AL  GK +H          D
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I +AL+ +YA+CG +  A ++F  MP R+LI+WN++I+G+A+     EA+R++  M  
Sbjct: 365 VQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQS 424

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP  V+F+ +LSAC++      G+     + +   IK      N ++++  R G L 
Sbjct: 425 EGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLM 483

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
           EA+ + E    R D   W  ++       +   A ++ +++   EL+PD
Sbjct: 484 EAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPD 531



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 140/262 (53%), Gaps = 9/262 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H  ++  G+  N  + ++L++MY +CG + E+  VF+    ++ +S ++++ G+ Q
Sbjct: 450 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQ 509

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVI 119
            G +E+  ++F+EM+    E D  +F  VL  C    AL LGK++H + I  SG + DV 
Sbjct: 510 HGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGR-ITESGLQLDVN 568

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+++Y +CG +  A  +F  +  R++++W +MI G A  G   +A+ +F  M   G
Sbjct: 569 LGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEG 628

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFAS-MTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            +P   +F  +L  C+    +D G+K  A  +   Y +   +   N ++    ++G + +
Sbjct: 629 FRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVG--NALISAYSKSGSMTD 686

Query: 239 AETLIENADCRHDSSLWEVLLG 260
           A  + +    R   S  +++ G
Sbjct: 687 AREVFDKMPSRDIVSWNKIIAG 708



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 138/249 (55%), Gaps = 7/249 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H ++   GL  +V + ++L++MY +CG + ++  VF  +  ++ +S +A++ G
Sbjct: 548 LELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGG 607

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
               G+    I +F +M+         +F  +L+ C   A L  GK+V   YI  SG + 
Sbjct: 608 CADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKV-IAYILNSGYEL 666

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + +AL+  Y+K G +  A ++F +MP R++++WN +I+G+AQNG G+ A+     M 
Sbjct: 667 DTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQ 726

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E    P+  SF+ +L+ACS    ++ G++  A + K  +++  +     ++ +  + G  
Sbjct: 727 EQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKR-KLQGDVRVGAALISMYAKCGSQ 785

Query: 237 EEAETLIEN 245
            EA+ + +N
Sbjct: 786 GEAQEVFDN 794



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 141/264 (53%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L + K +HA+++   +  ++ + + L++MY KC  V ++H+VF +M +++ +S ++L+  
Sbjct: 43  LPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISC 102

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +   ++F EM+        I    +L AC   A L  GK++H Q I+    +D
Sbjct: 103 YAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRD 162

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             ++++L+ +Y KCG +  A Q+F  +  R+++++N+M+  +AQ    +E L +F  M+ 
Sbjct: 163 PRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSS 222

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V++I +L A +   ++D G K    +T E  +   I     +V +  R G ++
Sbjct: 223 EGISPDKVTYINLLDAFTTPSMLDEG-KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVD 281

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A+   +    R D  ++  L+ A
Sbjct: 282 SAKQAFKGTADR-DVVVYNALIAA 304



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 100/182 (54%), Gaps = 4/182 (2%)

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E +  ++  +L+ C     L   K +H Q +      D+ + + L+++Y KC  V  AHQ
Sbjct: 24  ETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +MP R++I+WNS+IS +AQ G  ++A ++F++M   G  P+ +++I +L+AC     
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143

Query: 200 IDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           ++ G+K  + + K  Y+  P+++  N ++ + G+ G L  A  +      R D   +  +
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQ--NSLLSMYGKCGDLPRARQVFAGISPR-DVVSYNTM 200

Query: 259 LG 260
           LG
Sbjct: 201 LG 202


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 214/367 (58%), Gaps = 42/367 (11%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GKE+H  V+ +G   +V V+++L++MY  CG + ++ ++FD+    +SVS +++L GY +
Sbjct: 148 GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVK 207

Query: 65  TGDFESVI---RIFREMEEIDLFSFGI--------------------------------- 88
            GD   V+   ++F EM+E D+ S+                                   
Sbjct: 208 KGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVV 267

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV----DLYAKCGCVDFAHQIFL 142
             VL ACA L+ ++ GK +H   IR      V +++AL+    D+Y KCGCV+ A ++F 
Sbjct: 268 VSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFN 327

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            M  + + +WN++I G A NG  E +L +F +M   G  P+ ++F+GVL AC HMGL+D 
Sbjct: 328 GMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDE 387

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           GR HFASM +++ I+P ++HY CMVDLLGRAGLL EAE LIE+     D + W  LLGAC
Sbjct: 388 GRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGAC 447

Query: 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
               +  + ERV +K++EL+PD    +VLL N++ + G W D  ++R +MK  GV K PG
Sbjct: 448 KKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPG 507

Query: 323 KSWIEAN 329
            S IEAN
Sbjct: 508 CSLIEAN 514



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 141/307 (45%), Gaps = 54/307 (17%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLV--DESHRVFDKMLKKNSVSSSAL 58
            LKQ   + +++I  G   +    S L+        +  D S ++FD++   N    + +
Sbjct: 41  NLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTM 100

Query: 59  LQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           ++ Y Q+   E  + +++ M +     D +++ +V++ACA       GKE+H   ++   
Sbjct: 101 MRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGF 160

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPV---------------------------- 146
             DV +++ L+++YA CG +  A ++F + PV                            
Sbjct: 161 DSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKL 220

Query: 147 ------RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
                 +++++W+++ISG+ QNG  EEAL +F +M   G + D V  + VLSAC+H+ ++
Sbjct: 221 FNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIV 280

Query: 201 DRGRKHFASMTKEYRIKPKIEHY----NCMV----DLLGRAGLLEEAETLIENADCRHDS 252
             G+     M     I+  IE Y    N ++    D+  + G +E A  +    + +  S
Sbjct: 281 KTGK-----MIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVS 335

Query: 253 SLWEVLL 259
           S W  L+
Sbjct: 336 S-WNALI 341



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 101/201 (50%), Gaps = 12/201 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLV----DMYGKCGLVDESHRVFDKMLKKNSVSSSA 57
           +K GK +H  VI +G+   V ++++L+    DMY KCG V+ +  VF+ M +K   S +A
Sbjct: 280 VKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNA 339

Query: 58  LLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           L+ G    G  E  + +F EM+      +  +F  VL AC  +  +  G+      I + 
Sbjct: 340 LIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKH 399

Query: 114 GCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRI 171
           G + +V     +VDL  + G ++ A ++   MP+  ++ TW +++    ++G  E   R+
Sbjct: 400 GIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERV 459

Query: 172 FDDMTEGGTKPDHVSFIGVLS 192
              + E   +PDH  F  +LS
Sbjct: 460 GRKLIE--LQPDHDGFHVLLS 478



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 81/185 (43%), Gaps = 2/185 (1%)

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           +D++ QIF ++   N   WN+M+  + Q+   E+AL ++  M +    PD+ ++  V+ A
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+ + L++ G K       +      +   N ++++    G + +A  L + +    DS 
Sbjct: 139 CA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVL-DSV 196

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
            W  +L       +        K   E+     +S+  L + Y   G + +A  +   M 
Sbjct: 197 SWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 256

Query: 314 YSGVK 318
            +G++
Sbjct: 257 ANGMR 261


>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 142/336 (42%), Positives = 210/336 (62%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +   V ++G+    +V S+LV MY KCG + E+ RVFD +  K++V+ +AL+ G
Sbjct: 249 LALGRWLEEWVKSVGMEVGSLVGSALVGMYEKCGEMAEARRVFDAIAHKDNVAWNALITG 308

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I +F  M +     D  +   VL ACA + AL LG E+    ++R    +
Sbjct: 309 YAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAAVGALELGTELDRYALQRGFYSN 368

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           V + +ALVD+Y+KCG +  A Q+F ++P +N  +WN++I G A NGRG+EA+R F+ M  
Sbjct: 369 VYVGTALVDMYSKCGDLTRAIQVFEKLPCKNEASWNALICGLAFNGRGQEAIRQFELMRK 428

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +PD ++FIGVLSAC H GL+  GR+ F S+T E++I PKIEHY+CMVDLL RAG L
Sbjct: 429 QEGLRPDDITFIGVLSACVHAGLLKDGRRWFDSLTSEFQIIPKIEHYSCMVDLLARAGHL 488

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA   IE    + D+ +   LL AC   +N  V+ RV  KIM L+P    +YV+   +Y
Sbjct: 489 EEAWDFIEKIPGKPDAVMLGALLAACRKCKNVEVSVRVINKIMLLEPSNSWNYVVSSKIY 548

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            +  R +D+ ++R LM+  GV K+PG SWIE + ++
Sbjct: 549 ASSDRLDDSARMRGLMRERGVSKIPGCSWIEVSGRV 584



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 136/253 (53%), Gaps = 13/253 (5%)

Query: 15  LGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRI 74
           LGL  +     SLV MY   G    + RVFD +L+++ VS +++++ Y   G  +   R+
Sbjct: 160 LGLHNHDHTVHSLVTMYSNLGRPRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARM 219

Query: 75  FREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLY 128
           FR M        +  +  +VL AC     L LG+ +  ++++  G +   ++ SALV +Y
Sbjct: 220 FRAMVAEGAVPPNAVTVAVVLAACRDAGDLALGRWLE-EWVKSVGMEVGSLVGSALVGMY 278

Query: 129 AKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI 188
            KCG +  A ++F  +  ++ + WN++I+G+AQNG  +EA+ +F  M + G +PD ++ +
Sbjct: 279 EKCGEMAEARRVFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPDKITLV 338

Query: 189 GVLSACSHMGLIDRGRK--HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
           GVLSAC+ +G ++ G +   +A     Y     +     +VD+  + G L  A  + E  
Sbjct: 339 GVLSACAAVGALELGTELDRYALQRGFYS---NVYVGTALVDMYSKCGDLTRAIQVFEKL 395

Query: 247 DCRHDSSLWEVLL 259
            C++++S W  L+
Sbjct: 396 PCKNEAS-WNALI 407


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 137/332 (41%), Positives = 206/332 (62%), Gaps = 4/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H  ++ +G+  NV V +SLVDMY KCG ++++  VFD M +K+ VS  A++QG
Sbjct: 229 LNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQG 288

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  I +F +M+    + D ++   VL ACA L AL LG+ V     R     +
Sbjct: 289 YALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYN 348

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ +AL+DLYAKCG +  A ++F  M  ++ + WN++ISG A NG  + +  +F  + +
Sbjct: 349 PVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEK 408

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD  +FIG+L  C+H GL+D GR++F SM + + + P IEHY CMVDLLGRAGLL+
Sbjct: 409 LGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLD 468

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI N     ++ +W  LLGAC   R+  +AE   K+++EL+P    +YVLL N+Y 
Sbjct: 469 EAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYS 528

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           A  +W++A K+R  M    ++K PG SWIE +
Sbjct: 529 ANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVD 560



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 147/263 (55%), Gaps = 8/263 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++H  V+  G   +V V++SLV +Y KCG ++++H+VFD +  KN VS +A++ G
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISG 187

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G F   I +FR + E++L    F+   VL AC  L  L  G+ +H   +     ++
Sbjct: 188 YIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRN 247

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + ++LVD+YAKCG ++ A  +F  MP +++++W +MI G+A NG  +EA+ +F  M  
Sbjct: 248 VFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQR 307

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLL 236
              KPD  + +GVLSAC+ +G ++ G      + + E+   P +     ++DL  + G +
Sbjct: 308 ENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLG--TALIDLYAKCGSM 365

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
             A  + +      D  +W  ++
Sbjct: 366 SRAWEVFKGMK-EKDRVVWNAII 387



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 150/316 (47%), Gaps = 18/316 (5%)

Query: 15  LGLCGNVVVESSLVDMYGKCGL----VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFES 70
            GLC     ++ L++M  +C       + +  +F ++ + N    + +++G      F+ 
Sbjct: 40  FGLCH----DNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDD 95

Query: 71  VIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVD 126
            I  +  M       + F+F  VL+ACA L  L+LG ++H   ++     DV ++++LV 
Sbjct: 96  AIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVC 155

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           LYAKCG ++ AH++F  +P +N+++W ++ISG+   G+  EA+ +F  + E    PD  +
Sbjct: 156 LYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFT 215

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
            + VLSAC+ +G ++ G +       E  +   +     +VD+  + G +E+A ++ +  
Sbjct: 216 IVRVLSACTQLGDLNSG-EWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGM 274

Query: 247 DCRHDSSLWEVLLG-ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR----AVGR 301
             +   S   ++ G A        +   +  +   +KPDC+    +L    R     +G 
Sbjct: 275 PEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGE 334

Query: 302 WNDAFKIRTLMKYSGV 317
           W      R    Y+ V
Sbjct: 335 WVSGLVDRNEFLYNPV 350


>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
          Length = 746

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 136/316 (43%), Positives = 199/316 (62%), Gaps = 5/316 (1%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-- 79
           +V S+L+ MY KCG + E+ RVFD ++ K+ V+ +A++ GY Q G     I +F  M   
Sbjct: 290 LVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIA 349

Query: 80  --EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
               D  +   VL AC+ + AL LG E+     RR    +V + +ALVD+YAKCG +D A
Sbjct: 350 GMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKA 409

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSH 196
            ++F +MP +N+ +WN++I G A NGRG+EA++ F  M  E G KPD ++FIGVLSAC H
Sbjct: 410 IEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVH 469

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            GL+  G++ F S+T E++I PKIEHY+CMVDLL R+G LEEA   IE    + D+ +  
Sbjct: 470 AGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLG 529

Query: 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
            LL AC   +N  + ERV  +I++L+P    +YV+   +Y +  R +D+ K+R LM+  G
Sbjct: 530 ALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERG 589

Query: 317 VKKMPGKSWIEANSKL 332
           V K PG SW+E + K+
Sbjct: 590 VNKTPGCSWVEVSGKV 605



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 136/262 (51%), Gaps = 11/262 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            +  HA +  +GL G+     SL+ MY        + +VFD +  ++ VS +A+++ Y +
Sbjct: 171 ARAAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGR 230

Query: 65  TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            G    V R+FR+M +      ++ +  +VL AC     L LG+ V           D +
Sbjct: 231 VGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSL 290

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + SAL+ +Y KCG +  A ++F  +  ++++ WN+MI+G+AQNG   EA+ +F  M   G
Sbjct: 291 VGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAG 350

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK--HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            +PD ++  GVLSACS +G ++ G +   +AS    Y     +     +VD+  + G L+
Sbjct: 351 MRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYS---NVYVGTALVDMYAKCGDLD 407

Query: 238 EAETLIENADCRHDSSLWEVLL 259
           +A  +     C++ +S W  L+
Sbjct: 408 KAIEVFRKMPCKNVAS-WNALI 428



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 14/154 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G E+       GL  NV V ++LVDMY KCG +D++  VF KM  KN  S +AL+ G
Sbjct: 371 LELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICG 430

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
               G  +  I+ F+ M      + D  +F  VL AC     ++ GK    ++      +
Sbjct: 431 LAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGK----RWFNSLTPE 486

Query: 117 DVIIE-----SALVDLYAKCGCVDFAHQIFLQMP 145
             II      S +VDL A+ G ++ A     ++P
Sbjct: 487 FQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIP 520


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 212/336 (63%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QG ++HA+V   G   ++ + ++LV++Y +CG  +E+  +F ++  K+ ++ + L+ G
Sbjct: 463 MRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISG 522

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+  ++  + +F +M +     ++F+F   + A A LA ++ GK+VH + ++     +
Sbjct: 523 FGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSE 582

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ LY KCG ++ A  IF +M +RN ++WN++I+  +Q+GRG EAL +FD M +
Sbjct: 583 TEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQ 642

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+ V+FIGVL+ACSH+GL++ G  +F SM+  Y + P  +HY C+VD+LGRAG L+
Sbjct: 643 EGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLD 702

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A   ++      ++ +W  LL AC   +N  + E  AK ++EL+P    SYVLL N Y 
Sbjct: 703 RARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYA 762

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W +  ++R +MK  G++K PG+SWIE  + ++
Sbjct: 763 VTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVH 798



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 139/263 (52%), Gaps = 8/263 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++H+ ++  G+  + + E SL+D+Y KCG ++ +H +F+   + N V  + +L  
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  D      IF +M+   +    F++  +LR C     + LG+++H   I+     D
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESD 380

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + +   L+D+Y+K GC+D A +I   +  R++++W SMI+G+ Q+   EEAL  F +M +
Sbjct: 381 MYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQD 440

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G  PD++      SAC+ +  + +G + H       Y     I  +N +V+L  R G  
Sbjct: 441 CGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY--AADISIWNTLVNLYARCGRS 498

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           EEA +L    + + D   W  L+
Sbjct: 499 EEAFSLFREIEHK-DEITWNGLI 520



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 149/267 (55%), Gaps = 6/267 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +++ G+++H+  I  G   ++ V   L+DMY K G +D++ ++ + + K++ VS ++++ 
Sbjct: 361 QIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIA 420

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q    E  +  F+EM++  ++   I L     ACAG+ A+R G ++H +        
Sbjct: 421 GYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAA 480

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+ I + LV+LYA+CG  + A  +F ++  ++ ITWN +ISGF Q+   ++AL +F  M 
Sbjct: 481 DISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMG 540

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G K +  +FI  +SA +++  I +G++      K      + E  N ++ L G+ G +
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTS-ETEVANALISLYGKCGSI 599

Query: 237 EEAETLIENADCRHDSSLWEVLLGACT 263
           E+A+ +      R++ S W  ++ +C+
Sbjct: 600 EDAKMIFSEMSLRNEVS-WNTIITSCS 625



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 139/259 (53%), Gaps = 6/259 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+HA  +  GL  + ++ + L+D+Y K GLV ++ +VF ++  ++ VS  A+L GY Q+G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             +   R++ +M    +    +    VL AC        G+ +H Q  +++ C +  + +
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           AL+ LY   G    A ++F  M   + +T+N++ISG AQ G GE AL+IFD+M   G +P
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRP 243

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           D V+   +L+AC+ +G + +G++  + + K       I     ++DL  + G +E A  +
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE-GSLLDLYVKCGDIETAHDI 302

Query: 243 IENADCRHDSSLWEVLLGA 261
               D R +  LW ++L A
Sbjct: 303 FNLGD-RTNVVLWNLMLVA 320



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 129/263 (49%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             QG+ +HA+V     C    V ++L+ +Y   G    + RVF  ML  + V+ + L+ G
Sbjct: 160 FAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISG 219

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  E  ++IF EM+      D  +   +L ACA +  L+ GK++H   ++     D
Sbjct: 220 HAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFD 279

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            I E +L+DLY KCG ++ AH IF      N++ WN M+  + Q     ++  IF  M  
Sbjct: 280 YITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQA 339

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+  ++  +L  C+  G I+ G +   S++ +   +  +     ++D+  + G L+
Sbjct: 340 TGIHPNQFTYPCILRTCTCTGQIELGEQ-IHSLSIKNGFESDMYVSGVLIDMYSKYGCLD 398

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +A  ++E  + R D   W  ++ 
Sbjct: 399 KARKILEMLEKR-DVVSWTSMIA 420


>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
          Length = 656

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 204/333 (61%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH + +   L  NV V S+LVDMYGKC    E++RVF+ + +KN VS +A++  Y Q
Sbjct: 202 GSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQ 261

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              FE  +++F +ME      + F++ + L +CAGLA L+ G  +    ++      + +
Sbjct: 262 NELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPV 321

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+++Y+K G V+ A ++FL MP R++++WNS+I G+A +GR  EA+  F DM     
Sbjct: 322 CNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEE 381

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P +V+FIGVLSAC+ +GL+D G  +   M KE  +KP  EHY CMV LL R G L+EAE
Sbjct: 382 VPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAE 441

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             IE+     D   W  LL +C  +RN  +  RVA++I +LKP    +YVLL N+Y    
Sbjct: 442 RFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKAN 501

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           RW+   K+R LM+  GV+K PG SWI+  S+++
Sbjct: 502 RWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVH 534



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 151/322 (46%), Gaps = 35/322 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++ H   I  GL  +  V S+++ MY +C  +DE+ +   K  +K     S ++   C+
Sbjct: 132 GRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKYSKKHGEKCRAMGSCVI---CR 188

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
                                   VL  CA    + LG +VH Q ++R    +V + SAL
Sbjct: 189 ------------------------VLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSAL 224

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           VD+Y KC     A+++F  +P +N+++W ++++ + QN   E+AL++F DM   G +P+ 
Sbjct: 225 VDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNE 284

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTK--EYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
            ++   L++C+ +  +  G    A   K   + + P     N ++++  ++G +E+A  +
Sbjct: 285 FTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVC---NALMNMYSKSGSVEDARRV 341

Query: 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302
             +  CR   S   +++G     R     E     +   +   +++++ + +    +G  
Sbjct: 342 FLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLV 401

Query: 303 NDAF-KIRTLMKYSGVKKMPGK 323
           ++ F  +  +MK  GVK  PGK
Sbjct: 402 DEGFYYLNIMMKEVGVK--PGK 421



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 4/107 (3%)

Query: 99  LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
           L LGK VH + +R +   DV+  + L+ LY KCG +  A Q+F  MP RN ++ N ++SG
Sbjct: 32  LSLGKAVHARVVRAARF-DVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSG 90

Query: 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +A +GR  +AL +      G    +       ++A +H+   D GR+
Sbjct: 91  YASSGRHRDALALLRVADFG---LNEYVLSSAVAATAHVRSYDMGRQ 134



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G  + A  +  G  G + V ++L++MY K G V+++ RVF  M  ++ VS ++++ G
Sbjct: 300 LKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIG 359

Query: 62  YCQTGDFESVIRIFREM---EEIDLF-SFGIVLRACAGLAALRLG 102
           Y   G     +  F +M   EE+  + +F  VL ACA L  +  G
Sbjct: 360 YAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEG 404


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 133/315 (42%), Positives = 202/315 (64%), Gaps = 6/315 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +++  +S++  Y KC LVD +  +FD M +K+ VS S+++ GY Q   F+  + +F+EM+
Sbjct: 306 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 365

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
               + D  +   V+ ACA LAAL  GK VH  YI+R+G   +VI+ + L+D+Y KCGCV
Sbjct: 366 MSGFKPDETTLVSVISACARLAALEQGKWVHA-YIKRNGLTINVILGTTLIDMYMKCGCV 424

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           + A ++F  M  + + TWN++I G A NG  E +L +F +M +    P+ ++F+GVL AC
Sbjct: 425 ETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGAC 484

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
            HMGL+D G+ HF SM  +++I+P ++HY CMVDLLGRAG L+EAE L+       D + 
Sbjct: 485 RHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVAT 544

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LLGAC    ++ +  RV +K++EL+PD    +VLL N+Y + G+W+D  +IR +M  
Sbjct: 545 WGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTK 604

Query: 315 SGVKKMPGKSWIEAN 329
             V K+PG S IEAN
Sbjct: 605 HRVLKIPGCSMIEAN 619



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 133/255 (52%), Gaps = 36/255 (14%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +++  +S++ ++G  GLV E+ ++FD+ML+K+ V+ SAL+  + Q   +E  IR F  M 
Sbjct: 174 SIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMH 233

Query: 80  EIDLFSFGIV----LRACAGLAALRLGKEVHC--------QYIR--------RSGCKDVI 119
           +I +    +V    L ACA L  + +GK +H          YI          S C D++
Sbjct: 234 KIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIM 293

Query: 120 I------ESALVDL---------YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
           +      E+ L+DL         Y KC  VD A  IF  MP +++++W+SMISG+AQN  
Sbjct: 294 VARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDL 353

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
            +E L +F +M   G KPD  + + V+SAC+ +  +++G K   +  K   +   +    
Sbjct: 354 FDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINVILGT 412

Query: 225 CMVDLLGRAGLLEEA 239
            ++D+  + G +E A
Sbjct: 413 TLIDMYMKCGCVETA 427



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 118/243 (48%), Gaps = 36/243 (14%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           + K+VH  V+ LG   +V V ++L++ +  C  + ++ RVF++    +SVS +++L GY 
Sbjct: 96  EAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYI 155

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
           + G+ E    I+ +M E                                   + +I  ++
Sbjct: 156 EIGNVEEAKHIYHQMPE-----------------------------------RSIIASNS 180

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           ++ L+   G V  A ++F +M  ++++TW+++I+ F QN   EEA+R F  M + G   D
Sbjct: 181 MIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVD 240

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
            V  +  LSAC+++ +++ G K   S++ +   +  I   N ++ +  + G +  A  L 
Sbjct: 241 EVVAVSALSACANLLVVNMG-KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLF 299

Query: 244 ENA 246
           + A
Sbjct: 300 DEA 302



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 8/197 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VHA +   GL  NV++ ++L+DMY KCG V+ +  VF  M++K   + +AL+ G
Sbjct: 389 LEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILG 448

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
               G  ES + +F  M++  +     +F  VL AC  +  +  G+      I     + 
Sbjct: 449 LAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQP 508

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
           +V     +VDL  + G +  A ++  +MP+  ++ TW +++    ++G  E   R+   +
Sbjct: 509 NVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKL 568

Query: 176 TEGGTKPDHVSFIGVLS 192
            E   +PDH  F  +LS
Sbjct: 569 IE--LQPDHDGFHVLLS 583



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 75/145 (51%), Gaps = 4/145 (2%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRA 92
           +D + R+F+ +   N    + +++ Y QT        +++ M       D +++ ++++A
Sbjct: 28  IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQA 87

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
           C+   +    K+VH   ++     DV + + L++ ++ C  +  A ++F +  V + ++W
Sbjct: 88  CSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSW 147

Query: 153 NSMISGFAQNGRGEEALRIFDDMTE 177
           NS+++G+ + G  EEA  I+  M E
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMPE 172


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/333 (39%), Positives = 201/333 (60%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+H  +I   L     V S+++DMY KCG +D + RVF+++ +K+++  ++++  
Sbjct: 377 LNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITS 436

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G     I +FR+M       D  S    L ACA L AL  GKE+H   I+     D
Sbjct: 437 CSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSD 496

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  ES+L+D+YAKCG ++F+ ++F +M  RN ++WNS+IS +  +G  +E L +F +M  
Sbjct: 497 LYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLR 556

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PDHV+F+G++SAC H G +D G +++  MT+EY I  ++EHY C+ D+ GRAG L+
Sbjct: 557 NGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLD 616

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I +     D+ +W  LLGAC    N  +AE  +K + +L P     YVLL NV  
Sbjct: 617 EAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQA 676

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
             G+W    K+R++MK  GV+K+PG SWIE N+
Sbjct: 677 GAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNN 709



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 144/264 (54%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK  KE+H  +I   +  +V ++S+L+D+Y KC  V+ + ++  +    ++V  + ++ G
Sbjct: 276 LKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISG 335

Query: 62  YCQTGDFESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  +  FR    E  +    +F  +  A AGLAAL LGKE+H   I+    + 
Sbjct: 336 YVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEK 395

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SA++D+YAKCG +D A ++F ++  ++ I WNSMI+  +QNGR  EA+ +F  M  
Sbjct: 396 CHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGM 455

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GT+ D VS  G LSAC+++  +  G++    M K   ++  +   + ++D+  + G L 
Sbjct: 456 EGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG-PLRSDLYAESSLIDMYAKCGNLN 514

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            +  + +    R++ S W  ++ A
Sbjct: 515 FSRRVFDRMQERNEVS-WNSIISA 537



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 110/200 (55%), Gaps = 4/200 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K GK VH  V  +GL  +V V SSL+ +Y + G + ++  +FD + +K+SV  + +L G
Sbjct: 74  VKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNG 133

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + GD  + I+IF EM   ++     +F  VL  CA  A L LG ++H   +      D
Sbjct: 134 YVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELD 193

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + + L+ +Y+KC C+  A ++F   P  +L++WN +ISG+ QNG   EA  +F  M  
Sbjct: 194 SPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMIS 253

Query: 178 GGTKPDHVSFIGVLSACSHM 197
            G KPD ++F   L   + +
Sbjct: 254 AGIKPDSITFASFLPCVNEL 273



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 133/266 (50%), Gaps = 6/266 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H   ++ GL  +  V ++L+ MY KC  +  + ++FD   + + VS + ++ G
Sbjct: 175 LDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISG 234

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G       +FR M     + D  +F   L     L +L+  KE+H   IR +   D
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLD 294

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V ++SAL+D+Y KC  V+ A +I  Q    + +   +MISG+  NG+ +EAL  F  + +
Sbjct: 295 VFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQ 354

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP  V+F  +  A + +  ++ G++   S+ K  ++  K    + ++D+  + G L+
Sbjct: 355 ERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLD 413

Query: 238 EAETLIENADCRHDSSLWEVLLGACT 263
            A   + N     D+  W  ++ +C+
Sbjct: 414 LA-CRVFNRITEKDAICWNSMITSCS 438



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 101/181 (55%), Gaps = 6/181 (3%)

Query: 30  MYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFS 85
           MY + G + ++  +F  +    + + + +++G+   G F   +  + +M       D ++
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQM 144
           F  V++AC GL ++++GK VH + +   G K DV + S+L+ LYA+ G +  A  +F  +
Sbjct: 61  FPYVVKACCGLKSVKMGKIVH-ETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P ++ + WN M++G+ +NG    A++IF +M     KP+ V+F  VLS C+   ++D G 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 205 K 205
           +
Sbjct: 180 Q 180



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           +Y + G +  A  +F  + +     WN MI GF   G+   AL  +  M   G  PD  +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
           F  V+ AC  +  +  G K          +K  +   + ++ L    G L +A+ L +N 
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 247 DCRHDSSLWEVLL 259
             + DS LW V+L
Sbjct: 120 P-QKDSVLWNVML 131


>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
          Length = 746

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 136/316 (43%), Positives = 199/316 (62%), Gaps = 5/316 (1%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-- 79
           +V S+L+ MY KCG + E+ RVFD ++ K+ V+ +A++ GY Q G     I +F  M   
Sbjct: 290 LVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIA 349

Query: 80  --EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
               D  +   VL AC+ + AL LG E+     RR    +V + +ALVD+YAKCG +D A
Sbjct: 350 GMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKA 409

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSH 196
            ++F +MP +N+ +WN++I G A NGRG+EA++ F  M  E G KPD ++FIGVLSAC H
Sbjct: 410 IEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVH 469

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            GL+  G++ F S+T E++I PKIEHY+CMVDLL R+G LEEA   IE    + D+ +  
Sbjct: 470 AGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLG 529

Query: 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
            LL AC   +N  + ERV  +I++L+P    +YV+   +Y +  R +D+ K+R LM+  G
Sbjct: 530 ALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERG 589

Query: 317 VKKMPGKSWIEANSKL 332
           V K PG SW+E + K+
Sbjct: 590 VNKTPGCSWVEVSGKV 605



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 11/262 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            +  HA +  +GL G+     SL+ MY        + +VFD +  ++ VS +A+++ Y +
Sbjct: 171 ARAAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGR 230

Query: 65  TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            G    V R+FR+M +      +  +  +VL AC     L LG+ V           D +
Sbjct: 231 VGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSL 290

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + SAL+ +Y KCG +  A ++F  +  ++++ WN+MI+G+AQNG   EA+ +F  M   G
Sbjct: 291 VGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAG 350

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK--HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            +PD ++  GVLSACS +G ++ G +   +AS    Y     +     +VD+  + G L+
Sbjct: 351 MRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYS---NVYVGTALVDMYAKCGDLD 407

Query: 238 EAETLIENADCRHDSSLWEVLL 259
           +A  +     C++ +S W  L+
Sbjct: 408 KAIEVFRKMPCKNVAS-WNALI 428



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 14/154 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G E+       GL  NV V ++LVDMY KCG +D++  VF KM  KN  S +AL+ G
Sbjct: 371 LELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICG 430

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
               G  +  I+ F+ M      + D  +F  VL AC     ++ GK    ++      +
Sbjct: 431 LAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGK----RWFNSLTPE 486

Query: 117 DVIIE-----SALVDLYAKCGCVDFAHQIFLQMP 145
             II      S +VDL A+ G ++ A     ++P
Sbjct: 487 FQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIP 520


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 205/371 (55%), Gaps = 39/371 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  +H  VI  GL  +  V S+L+DMYGKC    E  +VFD+M   +  S +A + G
Sbjct: 266 LVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFG 325

Query: 62  YCQTGDFESVIRIFRE--------------------------MEEIDLF----------- 84
             + G  ES +R+FR+                          ME ++LF           
Sbjct: 326 LSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPN 385

Query: 85  --SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
             +   +L AC  +AAL  GK  HC  +RR    DV + SAL+D+YAKCG +  +   F 
Sbjct: 386 SVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFD 445

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            +P +NL+ WN++I+G+A +G+ +EA+ IFD M   G KPD +SF  VLSACS  GL + 
Sbjct: 446 GIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEE 505

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           G  +F SM+ +Y I+ ++EHY CMV LL RAG LE+A  +I       D+ +W  LL +C
Sbjct: 506 GSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSC 565

Query: 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
               N  + E  A+K+ EL+P    +Y+LL N+Y + G WN+  ++R +MK  G++K PG
Sbjct: 566 RVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPG 625

Query: 323 KSWIEANSKLN 333
            SWIE  +K++
Sbjct: 626 CSWIEVKNKVH 636



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 121/274 (44%), Gaps = 40/274 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK  ++VH      G   +  V+SSLV MY KC  + ++HRVFD+M + + VS SAL+  
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAA 189

Query: 62  YCQTGDFESVIRIFREME---------------------------------------EID 82
           Y + G  +   R+F EM                                        E D
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD 249

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
             +   VL A   L  L +G  +H   I++    D  + SAL+D+Y KC C     Q+F 
Sbjct: 250 GTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFD 309

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           QM   ++ + N+ I G ++NG+ E +LR+F  + + G + + VS+  +++ CS  G    
Sbjct: 310 QMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDME 369

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             + F  M +   +KP      C++   G    L
Sbjct: 370 ALELFREM-QIAGVKPNSVTIPCLLPACGNIAAL 402



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 110/213 (51%), Gaps = 4/213 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L Q ++ HA ++  GL  +  + + L+  Y       ++  V D + + N  S S L+  
Sbjct: 29  LSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYA 88

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKD 117
           + +   F   +  F +M    L     VL    +ACAGL+AL+  ++VH          D
Sbjct: 89  FSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSD 148

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             ++S+LV +Y KC  +  AH++F +M   ++++W+++++ +A+ G  +EA R+F +M +
Sbjct: 149 SFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGD 208

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
            G +P+ +S+ G+++  +H GL       F  M
Sbjct: 209 SGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241



 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/109 (21%), Positives = 48/109 (44%)

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
           A+L   ++ H   ++     D  + + L+  YA   C   A  +   +P  N+ +++++I
Sbjct: 27  ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             F++  +   AL  F  M   G  PD+      + AC+ +  +   R+
Sbjct: 87  YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQ 135


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 127/327 (38%), Positives = 210/327 (64%), Gaps = 4/327 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+  +  G+ G+V V  +L+DMY KCG ++++  VFD+M +K +V  ++++ GY  
Sbjct: 251 GRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYAL 310

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + ++ EM +    ID F+F I++R CA LA+L   K+ H   +R     D++ 
Sbjct: 311 HGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVA 370

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVDLY+K G ++ A  +F  MP +N+I+WN++I+G+  +GRG EA+ +F+ M   G 
Sbjct: 371 NTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGM 430

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+HV+F+ VLSACS+ GL DRG + F SM+++++IKP+  HY CM++LLGR GLL+EA 
Sbjct: 431 VPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAF 490

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LI++A  +   ++W  LL AC   +N  + +  A+K+  + P+   +YV+L N+Y   G
Sbjct: 491 ALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSG 550

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           R  +A  +   +K  G++ +P  SWIE
Sbjct: 551 RLEEAAAVIQTLKRRGLRMLPACSWIE 577



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 154/291 (52%), Gaps = 9/291 (3%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K+V   +I  GL  +  + + ++ M+ KCG++ ++ R+FD+M +KN +S + ++ G    
Sbjct: 151 KKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDA 210

Query: 66  GDFESVIRIFREMEEIDLFS------FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           GD+    R+F  M +   FS      F  ++RA AGL  +  G+++H   ++     DV 
Sbjct: 211 GDYFEAFRLFLMMWQX--FSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVF 268

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +  AL+D+Y+KCG ++ A  +F QMP +  + WNS+I+G+A +G  EEAL ++ +M + G
Sbjct: 269 VACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSG 328

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            K D+ +F  ++  C+ +  ++  ++  A + + +     I     +VDL  + G +E+A
Sbjct: 329 VKIDNFTFSIIIRICARLASLEHAKQAHAGLVR-HGFGLDIVANTALVDLYSKWGRIEDA 387

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYV 290
           + + +    ++  S   ++ G     R     E   + + E     H++++
Sbjct: 388 KHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFL 438



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 104/214 (48%), Gaps = 6/214 (2%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFGIVLR 91
           V +  +V +  L+K S      ++       +   + +F  +E     ++D  ++  ++ 
Sbjct: 80  VGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVS 139

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
           AC GL ++R  K+V    I      D  + + ++ ++ KCG +  A ++F +MP +N+++
Sbjct: 140 ACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILS 199

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
           WN++I G    G   EA R+F  M +  +      F+ ++ A + +GLI  GR+   S +
Sbjct: 200 WNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLIFAGRQ-LHSCS 258

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
            +  +   +     ++D+  + G +E+A+ + + 
Sbjct: 259 LKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQ 292



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 39/248 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  K+ HA ++  G   ++V  ++LVD+Y K G ++++  VFD M  KN +S +AL+ G
Sbjct: 349 LEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAG 408

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD---V 118
           Y   G     + +F  M        G+V      LA L       C Y   SG  D    
Sbjct: 409 YGNHGRGVEAVEMFERM-----LHEGMVPNHVTFLAVLSA-----CSY---SGLSDRGWE 455

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           I ES   D   K   + +A                 MI    + G  +EA  +  D    
Sbjct: 456 IFESMSRDHKIKPRAMHYA----------------CMIELLGREGLLDEAFALIKD---A 496

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLE 237
             KP    +  +L+AC      + G+  FA+  K Y + P K+ +Y  ++++   +G LE
Sbjct: 497 PFKPTVNMWAALLTACRVHKNFELGK--FAA-EKLYGMGPEKLSNYVVLLNIYNXSGRLE 553

Query: 238 EAETLIEN 245
           EA  +I+ 
Sbjct: 554 EAAAVIQT 561


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 209/337 (62%), Gaps = 4/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++H  V+ +GL  NV V ++L+DMY KCG ++ S ++F +      VS + ++ G
Sbjct: 363 LQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVG 422

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G+ E  + +F++M E  +     ++  VLRACAG+AAL  G ++H   ++    K+
Sbjct: 423 YVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKN 482

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ +AL+D+YAKCG +  A  +F  +   + ++WN+MISG++ +G   EAL+ F+ M E
Sbjct: 483 TVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLE 542

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+F+G+LSACS+ GL+DRG+ +F SM +EY I+P  EHY CMV LLGR+G L+
Sbjct: 543 TECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLD 602

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  L+          +W  LL AC    +  +    A++++E++P+   ++VLL N+Y 
Sbjct: 603 KAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYA 662

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNH 334
              RW +   IRT MK  G++K PG SWIE   ++++
Sbjct: 663 NARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHY 699



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 148/287 (51%), Gaps = 10/287 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK VH           + V   L+D+Y K G VD++ +VF++M K + +  S ++  Y Q
Sbjct: 265 GKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQ 324

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +   E  I +F  M       + F+   +L+ACA L  L+LG ++HC  ++     +V +
Sbjct: 325 SEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFV 384

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+YAKCG ++ + Q+F + P    ++WN++I G+ Q G GE+AL +F DM E   
Sbjct: 385 SNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQV 444

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           +   V++  VL AC+ +  ++ G + H  S+   Y     +   N ++D+  + G +++A
Sbjct: 445 QGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVG--NALIDMYAKCGNIKDA 502

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPD 284
             L+ +    HD   W  ++   +       A +  + ++E   KPD
Sbjct: 503 R-LVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPD 548



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 134/262 (51%), Gaps = 5/262 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G  VHA V  LG   +  V ++L+D Y  CG  + + +VFD +  K+ VS + ++  Y
Sbjct: 162 KLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACY 221

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            +   FE  +++F  M  +      F+F  VL+AC GL    +GK VH    + S  +++
Sbjct: 222 VENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEEL 281

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            +   L+DLY K G VD A Q+F +MP  ++I W+ MI+ +AQ+ + EEA+ +F  M  G
Sbjct: 282 FVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRG 341

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
              P+  +   +L AC+ +  +  G +    + K   +   +   N ++D+  + G +E 
Sbjct: 342 LVLPNQFTLASLLQACASLVDLQLGNQIHCHVVK-VGLDMNVFVSNALMDMYAKCGRMEN 400

Query: 239 AETLIENADCRHDSSLWEVLLG 260
           +  L   +    D S   V++G
Sbjct: 401 SLQLFSESPNCTDVSWNTVIVG 422



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 134/263 (50%), Gaps = 12/263 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H ++I  G C ++   + L++ Y K   + ++ ++FD+M  +N+VS   L+QGY Q
Sbjct: 63  GKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQ 122

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              F   I +F  ++    E++ F F  VL+        +LG  VH    +     D  +
Sbjct: 123 CLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFV 182

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D Y+ CG  + A Q+F  +  +++++W  M++ + +N   EE+L++F  M   G 
Sbjct: 183 GTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGF 242

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEY--RIKPKIEHYNCMVDLLGRAGLLE 237
           KP++ +F  VL AC  + + + G+  H  +    Y   +   +E    ++DL  ++G ++
Sbjct: 243 KPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVE----LIDLYIKSGDVD 298

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +A  + E    + D   W  ++ 
Sbjct: 299 DALQVFEEMP-KDDVIPWSFMIA 320



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 62/119 (52%)

Query: 73  RIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132
           R      E + + +G +L++C        GK +HC+ I++  C D+   + L++ Y K  
Sbjct: 34  RTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYD 93

Query: 133 CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
            +  A ++F +MP RN +++ ++I G++Q  R  EA+ +F  +   G + +   F  VL
Sbjct: 94  SLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVL 152


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 216/365 (59%), Gaps = 38/365 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK------------ 49
           +++G+++H  V+  GL  ++ ++++L+ +Y  CG ++++  + D+ML+            
Sbjct: 124 VEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSA 183

Query: 50  --------------------KNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFS 85
                               KN VS +A++ GY   G F  V+ +F +M+    + D  +
Sbjct: 184 YAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCT 243

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQM 144
              VL ACA + AL  G+ VH  YI ++G   D  + +ALVD+Y+KCG ++ A ++F   
Sbjct: 244 LVSVLSACAHVGALSQGEWVHA-YIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSC 302

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
             +++ TWNS+ISG + +G G+ AL+IF +M   G KP+ V+F+ VLSACS  GL+D GR
Sbjct: 303 LRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGR 362

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           + F  M   + I+P IEHY CMVDLLGR GLLEEAE L++    +  S +WE LLGAC  
Sbjct: 363 EMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRN 422

Query: 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324
             N  +AERVA+K++EL P    S+V L N+Y ++GRW D  ++R  M+  GV+K PG S
Sbjct: 423 HGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCS 482

Query: 325 WIEAN 329
            IE +
Sbjct: 483 MIEVD 487



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 151/321 (47%), Gaps = 47/321 (14%)

Query: 7   EVHAKVITLGLCGNVVVESSL---VDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           + HA ++  GL  +    S L   V        +  +H +F ++   NS   + +++ Y 
Sbjct: 25  QAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYA 84

Query: 64  QTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            +   E+ + IF +M       D ++F   L++C   + +  G+++H   ++     D+ 
Sbjct: 85  NSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLF 144

Query: 120 IESALVDLYAKCGCVDFA--------------------------------HQIFLQMPVR 147
           I++ L+ LYA CGC++ A                                 ++F + PV+
Sbjct: 145 IQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVK 204

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           N+++WN+MI+G++  GR  E L +F+DM   G KPD+ + + VLSAC+H+G + +G    
Sbjct: 205 NVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVH 264

Query: 208 ASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           A + K       I+ +    +VD+  + G +E+A  +  N+  R D S W  ++   +T 
Sbjct: 265 AYIDKN---GISIDGFVATALVDMYSKCGSIEKALEVF-NSCLRKDISTWNSIISGLSTH 320

Query: 266 RNAHVAERVAKKIM--ELKPD 284
            +   A ++  +++    KP+
Sbjct: 321 GSGQHALQIFSEMLVEGFKPN 341



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           A V   +    + +AH IF ++P  N   WN++I  +A +   E AL IF  M      P
Sbjct: 47  ASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLP 106

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           D  +F   L +C     ++ GR+    + K   +   +   N ++ L    G +E+A  L
Sbjct: 107 DKYTFTFALKSCGSFSGVEEGRQIHGHVLKT-GLGDDLFIQNTLIHLYASCGCIEDARHL 165

Query: 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH-LSYVLLDNVYRAVGR 301
           ++    R D   W  LL A   +    + E  ++++    P  + +S+  +   Y   GR
Sbjct: 166 LDRMLER-DVVSWNALLSA---YAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGR 221

Query: 302 WNDAFKIRTLMKYSGVKK 319
           +++   +   M+++GVK 
Sbjct: 222 FSEVLVLFEDMQHAGVKP 239


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/382 (39%), Positives = 218/382 (57%), Gaps = 48/382 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD---ESHRVFDKMLKKNSVSSSAL 58
           L++G++VH +V+  G C NV V +SLV++Y   G  D   ++ RVFD+++ +N VS ++L
Sbjct: 148 LREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSL 207

Query: 59  LQGYCQTGDFESVIRIFREMEEIDLFSFGIV----------------------------- 89
           L GY + GD +   RIF EM E ++ S+  +                             
Sbjct: 208 LAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQ 267

Query: 90  ------LRACAGLAALRLGKEVHCQYIRR--SGCKDVII--ESALVDLYAKCGCVDFAHQ 139
                 L ACA L  L+LG  +H     R  +G + +++   ++L+ +YA CG +D A++
Sbjct: 268 VALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYK 327

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT---KPDHVSFIGVLSACSH 196
           +F+ M  R+ I+W SMI+GFA+ G  EEAL +F  M   GT   +PD ++FIGVL ACSH
Sbjct: 328 VFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSH 387

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            G +D+GR  F  M K++ I P+IEHY CMVDLL RAG L+EA  L E+   + + ++W 
Sbjct: 388 AGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWG 447

Query: 257 VLLGACTTFRNAHVAERVAKK-IMELKPDCHLSY-VLLDNVYRAVGRWNDAFKIRTLMKY 314
            LLG C   +NA +A  VA+K ++ELKPD    Y VLL NVY    RW D   +R  M  
Sbjct: 448 ALLGGCRIHKNAELASHVAQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVE 507

Query: 315 SGVKKMPGKSWIEANSKLNHDL 336
            GV+K  G+SW++ N  + HD 
Sbjct: 508 IGVRKPAGRSWVQINGVV-HDF 528



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 120/240 (50%), Gaps = 38/240 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K+ K++H ++I  G      +   L+  Y   G +  +H+VF+++   ++   + +++G
Sbjct: 47  IKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRG 106

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+     ++ ++  M E +     F++  ++  CA    LR G++VH + +    C +
Sbjct: 107 HSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTN 166

Query: 118 VIIESALVDLYA----------------------------------KCGCVDFAHQIFLQ 143
           V + ++LV+LYA                                  +CG VD A +IF +
Sbjct: 167 VFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDE 226

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP RN+++W +MI+G AQ GR ++AL +F +M   G K D V+ +  LSAC+ +G +  G
Sbjct: 227 MPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLG 286



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/103 (21%), Positives = 49/103 (47%)

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           K++H Q I     +   +   L+  Y   G +  AH++F ++   +   WN MI G +Q+
Sbjct: 51  KQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQS 110

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
               + + +++ M E   +P+  ++  ++  C+   L+  G +
Sbjct: 111 ETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQ 153


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 131/337 (38%), Positives = 202/337 (59%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H + +       + V +SLVDMY KC + +E+  +F  + ++ +VS +AL+ G
Sbjct: 367 LQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISG 426

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G   + +++F +M       D  +F  VL+A A  A+L LGK++H   IR    ++
Sbjct: 427 YVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLEN 486

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   S LVD+YAKCG +  A Q+F +MP RN ++WN++IS  A NG GE A+  F  M E
Sbjct: 487 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIE 546

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD VS +GVL+ACSH G +++G ++F +M+  Y I PK +HY CM+DLLGR G   
Sbjct: 547 SGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFA 606

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL-KPDCHLSYVLLDNVY 296
           EAE L++      D  +W  +L AC   +N  +AER A+K+  + K     +YV + N+Y
Sbjct: 607 EAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIY 666

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A G W     ++  M+  G+KK+P  SW+E N K++
Sbjct: 667 AAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIH 703



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 147/286 (51%), Gaps = 8/286 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA  +T G   +  V + ++D Y K   V E+  +FD+M + + VS + ++  Y Q
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              +E+ +  FREM+ +      F F  +L   A L++L++G+++HCQ +  +    + +
Sbjct: 329 ADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHV 388

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++LVD+YAKC   + A  IF  +P R  ++W ++ISG+ Q G     L++F  M     
Sbjct: 389 GNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNL 448

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           + D  +F  VL A +    +  G++  A + +   ++  +   + +VD+  + G +++A 
Sbjct: 449 RADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE-NVFSGSGLVDMYAKCGSIKDAV 507

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            + E    R+  S W  L+ A     +   A     K++E  L+PD
Sbjct: 508 QVFEEMPDRNAVS-WNALISAHADNGDGEAAIGAFAKMIESGLQPD 552



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 130/262 (49%), Gaps = 12/262 (4%)

Query: 7   EVHAKVITLGLCGN--VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           +VHA  + LG   N  + V + L+  Y +   +D +  +F+++ +K+SV+ + L+ GY +
Sbjct: 168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEK 227

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G +   I +F +M +       F+F  VL+A  GL    LG+++H   +     +D  +
Sbjct: 228 DGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASV 287

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + ++D Y+K   V     +F +MP  + +++N +IS ++Q  + E +L  F +M   G 
Sbjct: 288 GNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGF 347

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHY-NCMVDLLGRAGLLEE 238
              +  F  +LS  +++  +  GR+ H  ++         I H  N +VD+  +  + EE
Sbjct: 348 DRRNFPFATMLSIAANLSSLQMGRQLHCQALLA---TADSILHVGNSLVDMYAKCEMFEE 404

Query: 239 AETLIENADCRHDSSLWEVLLG 260
           AE + ++   R   S W  L+ 
Sbjct: 405 AELIFKSLPQRTTVS-WTALIS 425



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 111/235 (47%), Gaps = 41/235 (17%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + V A++I  G   +    + +V+   + G V  + +V+D+M  KN+VS++ ++ G+ +T
Sbjct: 33  RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92

Query: 66  GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS------------ 113
           GD  S   +F  M +  + ++ I++   A  +      ++  Q  R S            
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152

Query: 114 ---GCKDVIIESALVDLYA--------------------KCGC----VDFAHQIFLQMPV 146
              GC D + ++A+  ++A                    K  C    +D A  +F ++P 
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
           ++ +T+N++I+G+ ++G   E++ +F  M + G +P   +F GVL A   +GL D
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGLHD 265


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 207/335 (61%), Gaps = 4/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G++VH+  I  G    V V+++LV MY  CG  + +H++F+ M ++N V+ ++++ G
Sbjct: 11  VREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVING 70

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     + +FREM     E D F+   +L ACA L AL LG+  H   ++     +
Sbjct: 71  YALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGN 130

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +   +AL+DLYAKCG +  AH++F +M  +++++W S+I G A NG G+EAL +F ++  
Sbjct: 131 LHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELER 190

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P  ++F+GVL ACSH G++D G  +F  M +EY I PKIEHY CMVDLLGRAGL++
Sbjct: 191 KGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVK 250

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A   I+N   + ++ +W  LLGACT   +  + E    ++++L+P     YVLL N+Y 
Sbjct: 251 QAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYA 310

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +  RW+D  K+R  M   GVKK PG S +E  ++L
Sbjct: 311 SEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRL 345



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 96/170 (56%), Gaps = 1/170 (0%)

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
           RA A L  +R G++VH   IR      V +++ LV +YA CG  + AH++F  M  RNL+
Sbjct: 3   RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLV 62

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           TWNS+I+G+A NGR  EAL +F +M   G +PD  + + +LSAC+ +G +  GR+    M
Sbjct: 63  TWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM 122

Query: 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            K   +   +   N ++DL  + G + +A  + +  + +   S   +++G
Sbjct: 123 VK-VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVG 171


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 130/337 (38%), Positives = 213/337 (63%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G +VH ++   G   +  V S+++DMYGKCG +  + +VF+++  KN VS +A+L  
Sbjct: 246 LRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAA 305

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G FE  +  F EME   L    ++F ++L +CAG++AL  GK +H + I++SG +D
Sbjct: 306 YSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTR-IKKSGFED 364

Query: 118 -VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            +I+ +AL+++Y+K G ++ AH++FL+M  R+ ITW++MI G + +G G EAL +F +M 
Sbjct: 365 HIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEML 424

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                P +V+F+GVLSAC+H+G +  G  +   + K+  I+P +EHY C+V LL +AG L
Sbjct: 425 AAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRL 484

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EAE  +++   + D   W  LL AC   +N  + ++VA+ ++++ P    +Y+LL N+Y
Sbjct: 485 DEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMY 544

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
               RW+   KIR LM+   VKK PG SWIE  + ++
Sbjct: 545 AKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIH 581



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 161/330 (48%), Gaps = 14/330 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++ +G + H   +  GL  +  V+++L+ MY +   V  +  V+ ++   +  S + ++ 
Sbjct: 144 QVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIIN 203

Query: 61  GYCQTG----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G  + G      E + R+  E    D  ++      C+ L  LRLG +VHC+  R     
Sbjct: 204 GLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEY 263

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + SA++D+Y KCG +  A ++F ++  +N+++W ++++ ++QNG  EEAL  F +M 
Sbjct: 264 DSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEME 323

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+  +F  +L++C+ +  +  G K   +  K+   +  I   N ++++  ++G +
Sbjct: 324 VDGLLPNEYTFAVLLNSCAGISALGHG-KLLHTRIKKSGFEDHIIVGNALINMYSKSGSI 382

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E A  +     CR DS  W  ++   +       A  V ++++  K   H  YV    V 
Sbjct: 383 EAAHKVFLEMICR-DSITWSAMICGLSHHGLGREALVVFQEMLAAKECPH--YVTFVGVL 439

Query: 297 RA---VGRWNDAF-KIRTLMKYSGVKKMPG 322
            A   +G   + F  +  LMK +G++  PG
Sbjct: 440 SACAHLGSVQEGFYYLNQLMKQTGIE--PG 467



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 133/269 (49%), Gaps = 13/269 (4%)

Query: 2   LKQGKEVHAKVITLGLCG--NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           LK GK +HA +I        N+V  +SL+++Y KC  +  +  +FD M K+N VS  AL+
Sbjct: 41  LKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALM 100

Query: 60  QGYCQTGDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
            GY   G    V+R+F+ M  +D      + F  ++ +C+    +  G + H   ++   
Sbjct: 101 AGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGL 160

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
                +++AL+ +Y++   V  A  ++ ++P  ++ ++N +I+G  +NG   EAL + D 
Sbjct: 161 VFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDR 220

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGR 232
           M +     D+V+++     CSH+  +  G +    M   +R   + + +  + ++D+ G+
Sbjct: 221 MVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRM---FRTGAEYDSFVSSAIIDMYGK 277

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGA 261
            G +  A  +      ++  S W  +L A
Sbjct: 278 CGNILNARKVFNRLQTKNVVS-WTAILAA 305


>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
 gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
          Length = 767

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 136/316 (43%), Positives = 199/316 (62%), Gaps = 5/316 (1%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-- 79
           +V S+L+ MY KCG + E+ RVFD ++ K+ V+ +A++ GY Q G     I +F  M   
Sbjct: 290 LVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIA 349

Query: 80  --EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
               D  +   VL AC+ + AL LG E+     RR    +V + +ALVD+YAKCG +D A
Sbjct: 350 GMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKA 409

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSH 196
            ++F +MP +N+ +WN++I G A NGRG+EA++ F  M  E G KPD ++FIGVLSAC H
Sbjct: 410 IEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVH 469

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            GL+  G++ F S+T E++I PKIEHY+CMVDLL R+G LEEA   IE    + D+ +  
Sbjct: 470 AGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLG 529

Query: 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
            LL AC   +N  + ERV  +I++L+P    +YV+   +Y +  R +D+ K+R LM+  G
Sbjct: 530 ALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERG 589

Query: 317 VKKMPGKSWIEANSKL 332
           V K PG SW+E + K+
Sbjct: 590 VNKTPGCSWVEVSGKV 605



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 136/262 (51%), Gaps = 11/262 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            +  HA +  +GL G+     SL+ MY        + +VFD +  ++ VS +A+++ Y +
Sbjct: 171 ARAAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGR 230

Query: 65  TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            G    V R+FR+M +      ++ +  +VL AC     L LG+ V           D +
Sbjct: 231 VGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSL 290

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + SAL+ +Y KCG +  A ++F  +  ++++ WN+MI+G+AQNG   EA+ +F  M   G
Sbjct: 291 VGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAG 350

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK--HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            +PD ++  GVLSACS +G ++ G +   +AS    Y     +     +VD+  + G L+
Sbjct: 351 MRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYS---NVYVGTALVDMYAKCGDLD 407

Query: 238 EAETLIENADCRHDSSLWEVLL 259
           +A  +     C++ +S W  L+
Sbjct: 408 KAIEVFRKMPCKNVAS-WNALI 428



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 14/154 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G E+       GL  NV V ++LVDMY KCG +D++  VF KM  KN  S +AL+ G
Sbjct: 371 LELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICG 430

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
               G  +  I+ F+ M      + D  +F  VL AC     ++ GK    ++      +
Sbjct: 431 LAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGK----RWFNSLTPE 486

Query: 117 DVIIE-----SALVDLYAKCGCVDFAHQIFLQMP 145
             II      S +VDL A+ G ++ A     ++P
Sbjct: 487 FQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIP 520


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 211/335 (62%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++GKE+H  ++  GL  + V+ SSL+DMYGKCG +DE+  +FDK++ K+ VS ++++  
Sbjct: 236 IRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDR 295

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y ++  +     +F E+    E  + ++F  VL ACA L    LG++VH  Y+ R G   
Sbjct: 296 YFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVH-GYMTRVGFDP 354

Query: 118 V-IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
                S+L+D+Y KCG ++ A  +    P  +L++  S+I G+AQNG+ +EAL+ FD + 
Sbjct: 355 YSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLL 414

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + GTKPDHV+F+ VLSAC+H GL+++G + F S+T+++ +    +HY C+VDLL R+G  
Sbjct: 415 KSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRF 474

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E+ ++++     +    LW  +LG C+T+ N  +AE  A+++ +++P+  ++YV + N+Y
Sbjct: 475 EQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIY 534

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
            A G+W +  K+R  M+  G+ K PG SW E   K
Sbjct: 535 AAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRK 569



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 140/279 (50%), Gaps = 37/279 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK+VH  + T G    +V+ + ++ MY KCG + ++ +VFD+M +++  S + ++ G
Sbjct: 103 LEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNG 162

Query: 62  YCQTGDFESVIRIFREMEEIDLFSF---------------GIVLRAC------------- 93
           Y + G  E    +F EM E D +S+                +VL +              
Sbjct: 163 YAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFT 222

Query: 94  --------AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
                   A +  +R GKE+H   +R     D ++ S+L+D+Y KCGC+D A  IF ++ 
Sbjct: 223 VSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKII 282

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +++++W SMI  + ++ R  E   +F ++     +P+  +F GVL+AC+ +   + GR+
Sbjct: 283 DKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQ 342

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
               MT+     P     + ++D+  + G +E A  +++
Sbjct: 343 VHGYMTR-VGFDPYSFASSSLIDMYTKCGNIESARHVVD 380


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK++HA +I      NV V S+LVDMY KC  +  +  VF +M  KN +S +AL+ G
Sbjct: 288 LEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVG 347

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  +R+F EM+    + D ++ G V+ +CA LA+L  G + HC  +       
Sbjct: 348 YGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHY 407

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV LY KCG ++ AH++F +M   + ++W +++SG+AQ GR +E + +F+ M  
Sbjct: 408 ITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLA 467

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+FIGVLSACS  G +++GR +F SM K++ I P  +HY CM+DL  R+G L+
Sbjct: 468 KGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLK 527

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE  I+      D+  W  LL AC    +  + +  A+ ++E+ P    SYVLL +++ 
Sbjct: 528 EAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHA 587

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G+WN+  ++R  M+   VKK PG SWI+  +K++
Sbjct: 588 AKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVH 623



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 39/317 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGK------------------------------- 33
           GK+ H +++ LG   N  V S LVDMY K                               
Sbjct: 159 GKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLR 218

Query: 34  CGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
           C +V+E+ R+F+ M  ++S++ + ++ G+ Q G     + IFR M      ID ++FG +
Sbjct: 219 CKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSI 278

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L AC  L+AL  GK++H   IR     +V + SALVD+Y+KC  +  A  +F +M  +N+
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNI 338

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           I+W ++I G+ QNG  EEA+R+F +M   G  PD  +   V+S+C+++  ++ G + F  
Sbjct: 339 ISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQ-FHC 397

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           +     +   I   N +V L G+ G +E+A  L +     HD   W  L+     F  A 
Sbjct: 398 LALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVSGYAQFGRAK 456

Query: 270 VAERVAKKIME--LKPD 284
               + +K++   +KPD
Sbjct: 457 ETIDLFEKMLAKGVKPD 473



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 125/278 (44%), Gaps = 38/278 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+   ++L+       L+ +   +F  M +++ VS +A++ G+   G     +R++  + 
Sbjct: 71  NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130

Query: 80  EID------LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK--- 130
           + D        +   ++ A + L    LGK+ HCQ +R     +  + S LVD+YAK   
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSL 190

Query: 131 ----------------------------CGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
                                       C  V+ A ++F  M  R+ ITW +M++GF QN
Sbjct: 191 VGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQN 250

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
           G   EAL IF  M   G   D  +F  +L+AC  +  +++G++  A + +  R    +  
Sbjct: 251 GLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT-RYDDNVFV 309

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            + +VD+  +   ++ AET+     C++  S   +++G
Sbjct: 310 GSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVG 347


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  264 bits (674), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 127/327 (38%), Positives = 210/327 (64%), Gaps = 4/327 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+  +  G+ G+V V  +L+DMY KCG ++++  VFD+M +K +V  ++++ GY  
Sbjct: 251 GRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYAL 310

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + ++ EM +    ID F+F I++R CA LA+L   K+ H   +R     D++ 
Sbjct: 311 HGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVA 370

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVDLY+K G ++ A  +F  MP +N+I+WN++I+G+  +GRG EA+ +F+ M   G 
Sbjct: 371 NTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGM 430

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+HV+F+ VLSACS+ GL DRG + F SM+++++IKP+  HY CM++LLGR GLL+EA 
Sbjct: 431 VPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAF 490

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LI++A  +   ++W  LL AC   +N  + +  A+K+  + P+   +YV+L N+Y   G
Sbjct: 491 ALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSG 550

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           R  +A  +   +K  G++ +P  SWIE
Sbjct: 551 RLEEAAAVIQTLKRRGLRMLPACSWIE 577



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 153/289 (52%), Gaps = 5/289 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K+V   +I  GL  +  + + ++ M+ KCG++ ++ R+FD+M +KN +S + ++ G    
Sbjct: 151 KKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDA 210

Query: 66  GDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           GD+    R+F    ++  +     F  ++RA AGL  +  G+++H   ++     DV + 
Sbjct: 211 GDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVA 270

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
            AL+D+Y+KCG ++ A  +F QMP +  + WNS+I+G+A +G  EEAL ++ +M + G K
Sbjct: 271 CALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVK 330

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D+ +F  ++  C+ +  ++  ++  A + + +     I     +VDL  + G +E+A+ 
Sbjct: 331 IDNFTFSIIIRICARLASLEHAKQAHAGLVR-HGFGLDIVANTALVDLYSKWGRIEDAKH 389

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYV 290
           + +    ++  S   ++ G     R     E   + + E     H++++
Sbjct: 390 VFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFL 438



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 39/248 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  K+ HA ++  G   ++V  ++LVD+Y K G ++++  VFD M  KN +S +AL+ G
Sbjct: 349 LEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAG 408

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD---V 118
           Y   G     + +F  M        G+V      LA L       C Y   SG  D    
Sbjct: 409 YGNHGRGVEAVEMFERM-----LHEGMVPNHVTFLAVLSA-----CSY---SGLSDRGWE 455

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           I ES   D   K   + +A                 MI    + G  +EA  +  D    
Sbjct: 456 IFESMSRDHKIKPRAMHYA----------------CMIELLGREGLLDEAFALIKD---A 496

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLE 237
             KP    +  +L+AC      + G+  FA+  K Y + P K+ +Y  ++++  R+G LE
Sbjct: 497 PFKPTVNMWAALLTACRVHKNFELGK--FAA-EKLYGMGPEKLSNYVVLLNIYNRSGRLE 553

Query: 238 EAETLIEN 245
           EA  +I+ 
Sbjct: 554 EAAAVIQT 561



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 107/218 (49%), Gaps = 14/218 (6%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFGIVLR 91
           V +  +V +  L+K S      ++       +   + +F  +E     ++D  ++  ++ 
Sbjct: 80  VGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVS 139

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
           AC GL ++R  K+V    I      D  + + ++ ++ KCG +  A ++F +MP +N+++
Sbjct: 140 ACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILS 199

Query: 152 WNSMISGFAQNGRGEEALRIF----DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           WN++I G    G   EA R+F     D ++ G++     F+ ++ A + +GLI  GR+  
Sbjct: 200 WNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSR----MFVTMIRASAGLGLIFAGRQ-L 254

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
            S + +  +   +     ++D+  + G +E+A+ + + 
Sbjct: 255 HSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQ 292


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  264 bits (674), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 140/362 (38%), Positives = 206/362 (56%), Gaps = 36/362 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VHA+ +    C + VV+SSL+DMY KCG  DE+  VFD +L KNSVS ++++ G
Sbjct: 121 LRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISG 180

Query: 62  YCQTGD--------FESVIR-----------------------IFREMEE-----IDLFS 85
           Y ++G          ++ +R                       +F EM       +D   
Sbjct: 181 YARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLV 240

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              V+  CA LA L LGK++H   I       + I +ALVD+YAKC  +  A  IF +MP
Sbjct: 241 LSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +++I+W S+I G AQ+G+ EEAL ++D+M     KP+ V+F+G+L ACSH GL+ RGR+
Sbjct: 301 RKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRE 360

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F SMT +Y I P ++HY C++DLL R+G L+EAE L++    + D   W  LL AC   
Sbjct: 361 LFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRH 420

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  +  R+A ++++LKP+   +Y+LL NVY     W    K+R LM    V+K PG S 
Sbjct: 421 NNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSS 480

Query: 326 IE 327
           I+
Sbjct: 481 ID 482



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 126/236 (53%), Gaps = 37/236 (15%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+H+++I  G   + ++ ++L+D+YGKCGL+ ++ ++FD+M  ++ VS +++L  + +  
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 67  DFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
                + +   M      + D F F  ++RAC+ L  LRLGK+VH +++    C D +++
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVK 143

Query: 122 SALVDLYAKCGCVDFAHQI-------------------------------FLQMPVRNLI 150
           S+L+D+Y KCG  D A  +                               FLQ PVRNL 
Sbjct: 144 SSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLF 203

Query: 151 TWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +W ++ISG  Q+G G  +  +F++M  EG    D +    V+  C+++ L++ G++
Sbjct: 204 SWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQ 259



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L+ CA   +     E+H Q I+    K  ++ + L+D+Y KCG +  A Q+F +MP R+ 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           ++W S+++   +       L + + M T  G +PDH  F  ++ ACS +G +  G++  A
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
                     ++   + ++D+  + G  +EA  + ++
Sbjct: 130 RFMLSXFCDDEVVK-SSLIDMYTKCGQPDEARAVFDS 165


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  263 bits (673), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 213/336 (63%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+++HA+    G   ++ + ++L+ +Y +CG + E++  F+K+  KN++S ++L+ G
Sbjct: 580 LRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSG 639

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q+G FE  +++F  M     E+++F++G  + A A LA ++ G+++H   ++     +
Sbjct: 640 LAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSE 699

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++L+ LYAK G +  A + F  M  RN+I+WN+MI+G++Q+G G EALR+F++M  
Sbjct: 700 REVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKV 759

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+HV+F+GVLSACSH+GL+  G  +F SM K + + PK EHY C+VDLLGRAG L+
Sbjct: 760 CGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLD 819

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A   I+      D+ +W  LL AC   +N  + ER A  ++EL+P+   +YVL+ N+Y 
Sbjct: 820 RAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYA 879

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              +W      R LMK  GVKK PG+SWIE  + ++
Sbjct: 880 VSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVH 915



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 143/263 (54%), Gaps = 8/263 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G ++H+  I  G+  ++++E SL+D+Y KC  V+ +H+ F     +N V  + +L  
Sbjct: 378 LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVA 437

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  +      IFR+M+      + F++  +LR C  L AL LG+++H   I+     +
Sbjct: 438 YGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLN 497

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S L+D+YAK G +  A +I  ++P  ++++W +MI+G+ Q+    EAL++F++M  
Sbjct: 498 VYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEY 557

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G + D++ F   +SAC+ +  + +G++ H  S    +     I   N ++ L  R G +
Sbjct: 558 RGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN--NALISLYARCGRI 615

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           +EA    E    +++ S W  L+
Sbjct: 616 QEAYLAFEKIGDKNNIS-WNSLV 637



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 134/242 (55%), Gaps = 5/242 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H  VI  G   NV V S L+DMY K G +  + R+  ++ + + VS +A++ G
Sbjct: 479 LYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAG 538

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q   F   +++F EME    + D   F   + ACAG+ ALR G+++H Q        D
Sbjct: 539 YVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGAD 598

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I +AL+ LYA+CG +  A+  F ++  +N I+WNS++SG AQ+G  EEAL++F  M  
Sbjct: 599 LSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLR 658

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              + +  ++   +SA + +  I +G++   SM  +     + E  N ++ L  ++G + 
Sbjct: 659 TEAEVNMFTYGSAISAAASLANIKQGQQ-IHSMVLKTGYDSEREVSNSLISLYAKSGSIS 717

Query: 238 EA 239
           +A
Sbjct: 718 DA 719



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 9/241 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H  VI  G      V + LV +Y +   +  + R+F  M  ++ VS ++L+ G  Q
Sbjct: 280 GEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQ 339

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  + +F +M+    + D  +   +L ACA + AL  G ++H   I+     D+I+
Sbjct: 340 QGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIIL 399

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           E +L+DLY+KC  V+ AH+ FL     N++ WN M+  + Q     ++  IF  M   G 
Sbjct: 400 EGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGM 459

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC--MVDLLGRAGLLEE 238
            P+  ++  +L  C+ +G +  G +    + K      ++  Y C  ++D+  + G L  
Sbjct: 460 IPNQFTYPSILRTCTSLGALYLGEQIHTHVIK---TGFQLNVYVCSVLIDMYAKYGQLAL 516

Query: 239 A 239
           A
Sbjct: 517 A 517



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 130/266 (48%), Gaps = 6/266 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K+VH++    G   + +V + L+D+Y K G ++ + +VF+ +  K+ V+  A++ G  Q 
Sbjct: 180 KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQN 239

Query: 66  GDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  E  I +F +M   ++F        VL A   +    LG+++HC  I+     +  + 
Sbjct: 240 GLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVC 299

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + LV LY++   +  A +IF  M  R+ +++NS+ISG  Q G  + AL +F  M     K
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLK 359

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD ++   +LSAC+ +G + +G +  +   K   +   I     ++DL  +   +E A  
Sbjct: 360 PDCITVASLLSACASVGALHKGMQLHSHAIKA-GMSADIILEGSLLDLYSKCADVETAHK 418

Query: 242 LIENADCRHDSSLWEVLLGACTTFRN 267
                +   +  LW V+L A     N
Sbjct: 419 FFLXTETE-NIVLWNVMLVAYGQLDN 443



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 139/291 (47%), Gaps = 9/291 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +   +H ++   G  G  ++  SLVD Y + G    + +VFD+   ++  S + ++  
Sbjct: 74  LFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHV 133

Query: 62  Y-CQTGDFESVIRIFREM--EEI--DLFSFGIVLRAC-AGLAALRLGKEVHCQYIRRSGC 115
           +  Q  +F+ V  +FR M  E I  + ++F  VL+AC  G  A    K+VH +       
Sbjct: 134 FVAQKSNFQ-VFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFD 192

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
              ++ + L+DLY+K G ++ A ++F  + +++++TW +MISG +QNG  EEA+ +F DM
Sbjct: 193 SSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDM 252

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                 P       VLSA + + L + G +    +  ++    +    N +V L  R+  
Sbjct: 253 HASEIFPTPYVLSSVLSASTKIQLFELGEQ-LHCLVIKWGFHSETYVCNGLVALYSRSRK 311

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDC 285
           L  AE +    + R   S   ++ G      +    E   K   + LKPDC
Sbjct: 312 LISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDC 362



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 3/176 (1%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           +L  C    +L     +HC+ I +SG   + ++  +LVD Y + G    A ++F +   R
Sbjct: 64  LLEGCLTSGSLFETMRLHCR-ISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNR 122

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           ++ +WN MI  F       +   +F  M   G  P+  +F GVL AC    +     K  
Sbjct: 123 SVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQV 182

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
            S T  Y         N ++DL  + G +E A+ +  N  C  D   W  ++   +
Sbjct: 183 HSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVF-NCICMKDIVTWVAMISGLS 237


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  263 bits (673), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 138/342 (40%), Positives = 206/342 (60%), Gaps = 14/342 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC----GLVDESHRVFDKMLKKNSVSSSA 57
           L  GK VH  V+  G    V V+++LV MY  C    G ++ + +VFD+M K +SVS SA
Sbjct: 26  LNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKVFDEMYKSDSVSWSA 85

Query: 58  LLQGYCQTGDFESVIRIFREME-------EIDLFSFGIVLRACAGLAALRLGKEVHCQYI 110
           ++ GY + G     I +FREM+       EI + S   VL AC GL AL LGK V     
Sbjct: 86  MIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVS---VLSACTGLGALELGKWVESYVE 142

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
           +    K+V + +AL+D++AKCG VD A  +F  M  RN+++W S+I G A +GRG EA+ 
Sbjct: 143 KERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVA 202

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F++M   G  PD V FIG+LSACSH GL+D+G+++F SM K++ I PKIEHY CMVD+L
Sbjct: 203 VFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDML 262

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYV 290
            RAGL++EA   ++      +  +W  L+ AC       + E++ ++++  +P    +YV
Sbjct: 263 CRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYV 322

Query: 291 LLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           LL N+Y  +  W    +IR  M   G+KK+PG + IE ++++
Sbjct: 323 LLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEI 364



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 105/182 (57%), Gaps = 6/182 (3%)

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC----GCVDFAHQ 139
           F++  VL+ACAG+  L LGK VH   ++     +V +++ LV +Y  C    G ++FA +
Sbjct: 11  FTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARK 70

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +M   + ++W++MI G+ + GR  +A+ +F +M   G  PD ++ + VLSAC+ +G 
Sbjct: 71  VFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGA 130

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           ++ G K   S  ++ R++  +E  N ++D+  + G +++A  L  +   R+  S W  ++
Sbjct: 131 LELG-KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVS-WTSVI 188

Query: 260 GA 261
           G 
Sbjct: 189 GG 190


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  263 bits (673), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 211/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L + + +HA  I   +  NV V ++L+D+Y KCGL+ ++  VF+ M  ++ V+ S++  G
Sbjct: 181 LSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAG 240

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q   +E  + +FR+  E     D F    V+ ACAGLAA+  GK+V+    +   C +
Sbjct: 241 YVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSN 300

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+L+D+YAKCG ++ ++++F  +  RN++ WN+MISG +++ R  E + +F+ M +
Sbjct: 301 IFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQ 360

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+ V+F+ VLSAC HMGL+ +G+K+F  MTKE+ + P + HY+CMVD L RAG + 
Sbjct: 361 MGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIF 420

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI        +S+W  LL +C T  N  +AE  AKK+ +++P    +Y+LL N+Y 
Sbjct: 421 EAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYA 480

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G+W++  K+R L+K S VKK  GKSWIE   K++
Sbjct: 481 ANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVH 516



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 144/263 (54%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QGK  HA+++ +GL  +++  + L++MY KCG VD + +VFD+M  ++ VS + ++  
Sbjct: 80  LLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGS 139

Query: 62  YCQTGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G+     + ++++ RE      F+   VL ACA   AL   + +H   I+ +   +
Sbjct: 140 LTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLN 199

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+D+YAKCG +  A  +F  MP R+++TW+SM +G+ QN   E+AL +F    E
Sbjct: 200 VFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWE 259

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K D      V+ AC+ +  +  G++  A ++K       I   + ++D+  + G +E
Sbjct: 260 TGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKS-GFCSNIFVASSLIDMYAKCGGIE 318

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           E+  +  + + R +  LW  ++ 
Sbjct: 319 ESYKVFRDVEKR-NVVLWNAMIS 340



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ CA    L  GK  H Q +      D++  + L+++Y+KCG VDFA Q+F +MP R+
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           L++WN+MI    QNG   EAL +   M   GT     +   VL AC+    +        
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSE-----C 184

Query: 209 SMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIEN 245
            +   + IK  ++        ++D+  + GL+++A  + E+
Sbjct: 185 QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFES 225


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  263 bits (672), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 213/336 (63%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+++HA+    G   ++ + ++L+ +Y +CG + E++  F+K+  KN++S ++L+ G
Sbjct: 580 LRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSG 639

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q+G FE  +++F  M     E+++F++G  + A A LA ++ G+++H   ++     +
Sbjct: 640 LAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSE 699

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++L+ LYAK G +  A + F  M  RN+I+WN+MI+G++Q+G G EALR+F++M  
Sbjct: 700 REVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKV 759

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+HV+F+GVLSACSH+GL+  G  +F SM K + + PK EHY C+VDLLGRAG L+
Sbjct: 760 CGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLD 819

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            A   I+      D+ +W  LL AC   +N  + ER A  ++EL+P+   +YVL+ N+Y 
Sbjct: 820 RAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYA 879

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              +W      R LMK  GVKK PG+SWIE  + ++
Sbjct: 880 VSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVH 915



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 143/263 (54%), Gaps = 8/263 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G ++H+  I  G+  ++++E SL+D+Y KC  V+ +H+ F     +N V  + +L  
Sbjct: 378 LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVA 437

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  +      IFR+M+      + F++  +LR C  L AL LG+++H   I+     +
Sbjct: 438 YGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLN 497

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S L+D+YAK G +  A +I  ++P  ++++W +MI+G+ Q+    EAL++F++M  
Sbjct: 498 VYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEY 557

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G + D++ F   +SAC+ +  + +G++ H  S    +     I   N ++ L  R G +
Sbjct: 558 RGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN--NALISLYARCGRI 615

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           +EA    E    +++ S W  L+
Sbjct: 616 QEAYLAFEKIGDKNNIS-WNSLV 637



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 134/242 (55%), Gaps = 5/242 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H  VI  G   NV V S L+DMY K G +  + R+  ++ + + VS +A++ G
Sbjct: 479 LYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAG 538

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q   F   +++F EME    + D   F   + ACAG+ ALR G+++H Q        D
Sbjct: 539 YVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGAD 598

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I +AL+ LYA+CG +  A+  F ++  +N I+WNS++SG AQ+G  EEAL++F  M  
Sbjct: 599 LSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLR 658

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              + +  ++   +SA + +  I +G++   SM  +     + E  N ++ L  ++G + 
Sbjct: 659 TEAEVNMFTYGSAISAAASLANIKQGQQ-IHSMVLKTGYDSEREVSNSLISLYAKSGSIS 717

Query: 238 EA 239
           +A
Sbjct: 718 DA 719



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 9/241 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H  VI  G      V + LV +Y +   +  + R+F  M  ++ VS ++L+ G  Q
Sbjct: 280 GEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQ 339

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  + +F +M+    + D  +   +L ACA + AL  G ++H   I+     D+I+
Sbjct: 340 QGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIIL 399

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           E +L+DLY+KC  V+ AH+ FL     N++ WN M+  + Q     ++  IF  M   G 
Sbjct: 400 EGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGM 459

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC--MVDLLGRAGLLEE 238
            P+  ++  +L  C+ +G +  G +    + K      ++  Y C  ++D+  + G L  
Sbjct: 460 IPNQFTYPSILRTCTSLGALYLGEQIHTHVIK---TGFQLNVYVCSVLIDMYAKYGQLAL 516

Query: 239 A 239
           A
Sbjct: 517 A 517



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 130/266 (48%), Gaps = 6/266 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K+VH++    G   + +V + L+D+Y K G ++ + +VF+ +  K+ V+  A++ G  Q 
Sbjct: 180 KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQN 239

Query: 66  GDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  E  I +F +M   ++F        VL A   +    LG+++HC  I+     +  + 
Sbjct: 240 GLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVC 299

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + LV LY++   +  A +IF  M  R+ +++NS+ISG  Q G  + AL +F  M     K
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLK 359

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD ++   +LSAC+ +G + +G +  +   K   +   I     ++DL  +   +E A  
Sbjct: 360 PDCITVASLLSACASVGALHKGMQLHSHAIKA-GMSADIILEGSLLDLYSKCADVETAHK 418

Query: 242 LIENADCRHDSSLWEVLLGACTTFRN 267
                +   +  LW V+L A     N
Sbjct: 419 FFLTTETE-NIVLWNVMLVAYGQLDN 443



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 139/291 (47%), Gaps = 9/291 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +   +H ++   G  G  ++  SLVD Y + G    + +VFD+   ++  S + ++  
Sbjct: 74  LFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHV 133

Query: 62  Y-CQTGDFESVIRIFREM--EEI--DLFSFGIVLRAC-AGLAALRLGKEVHCQYIRRSGC 115
           +  Q  +F+ V  +FR M  E I  + ++F  VL+AC  G  A    K+VH +       
Sbjct: 134 FVAQKSNFQ-VFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFD 192

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
              ++ + L+DLY+K G ++ A ++F  + +++++TW +MISG +QNG  EEA+ +F DM
Sbjct: 193 SSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDM 252

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                 P       VLSA + + L + G +    +  ++    +    N +V L  R+  
Sbjct: 253 HASEIFPTPYVLSSVLSASTKIQLFELGEQ-LHCLVIKWGFHSETYVCNGLVALYSRSRK 311

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDC 285
           L  AE +    + R   S   ++ G      +    E   K   + LKPDC
Sbjct: 312 LISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDC 362



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 3/176 (1%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           +L  C    +L     +HC+ I +SG   + ++  +LVD Y + G    A ++F +   R
Sbjct: 64  LLEGCLTSGSLFETMRLHCR-ISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNR 122

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           ++ +WN MI  F       +   +F  M   G  P+  +F GVL AC    +     K  
Sbjct: 123 SVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQV 182

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
            S T  Y         N ++DL  + G +E A+ +  N  C  D   W  ++   +
Sbjct: 183 HSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVF-NCICMKDIVTWVAMISGLS 237


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  263 bits (672), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 130/333 (39%), Positives = 201/333 (60%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H+ V+  GL  +  V S+LVDMY KCG++D + ++FD+M KK+ V+ + ++ G
Sbjct: 117 LIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAG 176

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G       +F +M       D  +   ++ ACA L A+   + VH     R    D
Sbjct: 177 YAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLD 236

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +A++D+YAKCG +D + +IF +M  +N+I+W++MI  +  +G+G EAL +F  M  
Sbjct: 237 VELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLN 296

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+ ++FI +L ACSH GL+D G + F+ M+  Y ++P ++HY CMVDLLGRAG L+
Sbjct: 297 SGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLD 356

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LIEN +   D  +W   LGAC   R   +AE+ AK ++ L+      Y+LL N+Y 
Sbjct: 357 QALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYA 416

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
             GRW D  KIR LM    +KK+PG +WIE ++
Sbjct: 417 NAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDN 449



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 150/263 (57%), Gaps = 8/263 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           Q K+VHA+V T G+  +++V + L+ M  K   +  +H +F+KM +++ VS S ++ G+ 
Sbjct: 18  QIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFV 77

Query: 64  QTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           + GD+E   + FRE+     + D FS   V++AC     L +G+ +H   ++     D  
Sbjct: 78  KNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNF 137

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + S LVD+YAKCG +D A Q+F +MP ++L+T   MI+G+A+ G+  E+  +FD M   G
Sbjct: 138 VCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDG 197

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             PD V+ + +++AC+ +G +++ R  H     + Y +   +E    M+D+  + G ++ 
Sbjct: 198 FVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL--DVELGTAMIDMYAKCGSIDS 255

Query: 239 AETLIENADCRHDSSLWEVLLGA 261
           +  + +  + ++  S W  ++GA
Sbjct: 256 SREIFDRMEQKNVIS-WSAMIGA 277


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  263 bits (672), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 137/331 (41%), Positives = 205/331 (61%), Gaps = 5/331 (1%)

Query: 2   LKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L+ G+++H  +I    +  +V V ++LVDMY KCG  + + +VF +M  KN VS ++++ 
Sbjct: 242 LRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMIS 301

Query: 61  GYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G  Q G F+  + +FR+M+ +    D  +   VL +CA L  L LGK VH    R     
Sbjct: 302 GLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRA 361

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  I +ALVD+YAKCG +D A  +F  M  +++ ++ +MI G A +G+G +AL +F +M 
Sbjct: 362 DGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMP 421

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +PD V+F+GVL+ACSH+GL++ GRK+F  M+  Y ++P++EHY CMVDLLGRAGL+
Sbjct: 422 KMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLI 481

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE  I N     D+ +   LLGAC       + E V KKI +++P    +YVL+ N+Y
Sbjct: 482 NEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIY 541

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            +  RW DA K+R  MK   ++K PG S IE
Sbjct: 542 SSANRWRDALKLRKTMKERNLEKTPGCSSIE 572



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 153/243 (62%), Gaps = 6/243 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+EVH + I +GL  +V V ++L+ MY  C ++  + +VFD   +++ VS + ++QG
Sbjct: 141 VREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQG 200

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + G     + +F EM     + D  +  IVL +CA L  LRLG+++H   IR S    
Sbjct: 201 YVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNL 260

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV + +ALVD+Y KCG  +FA ++F +MPV+N+++WNSMISG AQ G+ +E+L +F  M 
Sbjct: 261 DVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQ 320

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KPD V+ + VL++C+++G+++ G+   A + +  +I+      N +VD+  + G +
Sbjct: 321 RLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRN-QIRADGFIGNALVDMYAKCGSI 379

Query: 237 EEA 239
           ++A
Sbjct: 380 DQA 382



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 7/241 (2%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D ++   VL+ACA   A+R G+EVH Q I+     DV + + L+ +YA C  +  A ++F
Sbjct: 124 DNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVF 183

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
              P R+L++W +MI G+ + G   E + +F +M     + D ++ + VLS+C+ +G + 
Sbjct: 184 DTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLR 243

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            GRK    + +   +   +   N +VD+  + G    A  + +    ++  S W  ++  
Sbjct: 244 LGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVS-WNSMISG 302

Query: 262 CTTFRNAHVAERVAKKIMEL--KPDCHLSYVLLDNVYR----AVGRWNDAFKIRTLMKYS 315
                    +  + +K+  L  KPD      +L++        +G+W  A+  R  ++  
Sbjct: 303 LAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRAD 362

Query: 316 G 316
           G
Sbjct: 363 G 363



 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCGCVD--FAHQ 139
            SF   L+ C  +  L   K++H   I+     D  + I + L  L A+   +D  +A  
Sbjct: 23  LSFLSTLQTCKSIKGL---KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALS 79

Query: 140 IFLQMPVRNLITWNSMISGFA-QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           +  Q+   NL  +N++I G A  N    E L ++  M   G  PD+ +   VL AC+   
Sbjct: 80  LLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESR 139

Query: 199 LIDRGRK 205
            +  G +
Sbjct: 140 AVREGEE 146


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  263 bits (672), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 134/313 (42%), Positives = 195/313 (62%), Gaps = 4/313 (1%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
           GNVV+ + ++D   + G +  +  +FD+M +++ VS + ++ GY Q G F   I +F+EM
Sbjct: 202 GNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEM 261

Query: 79  EEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
           +  ++     +   VL A A + AL LGK +H    +     D ++ SALVD+Y+KCG +
Sbjct: 262 QSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSI 321

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           D A Q+F  +P RN ITW+++I  FA +GR E+A+  F  M + G  P+ V++IG+LSAC
Sbjct: 322 DEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSAC 381

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           SH GL++ GR  F+ M K   ++P+IEHY CMVDLLGRAG LEEAE LI N     D  +
Sbjct: 382 SHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVI 441

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W+ LLGAC   +N  + ERVA+ +MEL P    SYV L N+Y ++G W    ++R  MK 
Sbjct: 442 WKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKG 501

Query: 315 SGVKKMPGKSWIE 327
             ++K PG SWIE
Sbjct: 502 MDIRKDPGCSWIE 514



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 137/319 (42%), Gaps = 72/319 (22%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGL----VDESHRVFDKMLKKNSVSSSALLQG 61
           K++HA  I  G   + +  + ++     C      +D +  VF +M + N    + +L+ 
Sbjct: 36  KQLHAIFIKTGQIQDPLTAAEVIKF---CAFSSRDIDYARAVFRQMPEPNCFCWNTILRV 92

Query: 62  YCQTGD---FESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
             +T D       + +F  M      + + F+F  VL+ACA  + LR GK++H   ++  
Sbjct: 93  LAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFG 152

Query: 114 GCKDVIIESALVDLYAKCG------------CVDF------------------------- 136
             +D  + S LV +Y  C              VDF                         
Sbjct: 153 FHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMID 212

Query: 137 ----------AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
                     A  +F +MP R++++WN MISG+AQNG   EA+ +F +M      P++V+
Sbjct: 213 GQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVT 272

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN----CMVDLLGRAGLLEEAETL 242
            + VL A + +G ++ G+         Y  K KIE  +     +VD+  + G ++EA  +
Sbjct: 273 LVSVLPAIARIGALELGK-----WIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQV 327

Query: 243 IENADCRHDSSLWEVLLGA 261
            E    R ++  W  ++GA
Sbjct: 328 FETLPKR-NAITWSAIIGA 345


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 134/313 (42%), Positives = 194/313 (61%), Gaps = 4/313 (1%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
           GNVV+ + ++D   + G +  +  +FD+M  ++ VS + ++ GY Q G F   I +F+EM
Sbjct: 202 GNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEM 261

Query: 79  EEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
           +  ++     +   VL A A + AL LGK +H    +     D ++ SALVD+Y+KCG +
Sbjct: 262 QSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSI 321

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           D A Q+F  +P RN ITW+++I  FA +GR E+A+  F  M + G  P+ V++IG+LSAC
Sbjct: 322 DKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSAC 381

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           SH GL++ GR  F+ M K   ++P+IEHY CMVDLLGRAG LEEAE LI N     D  +
Sbjct: 382 SHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVI 441

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W+ LLGAC   +N  + ERVA+ +MEL P    SYV L N+Y ++G W    ++R  MK 
Sbjct: 442 WKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKG 501

Query: 315 SGVKKMPGKSWIE 327
             ++K PG SWIE
Sbjct: 502 MDIRKDPGCSWIE 514



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 137/316 (43%), Gaps = 66/316 (20%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGL----VDESHRVFDKMLKKNSVSSSALLQG 61
           K++HA  I  G   + +  + ++     C      +D +  VF +M + N    + +L+ 
Sbjct: 36  KQLHAIFIKTGQIQDPLTAAEVIKF---CAFSSRDIDYARAVFRQMPEPNCFCWNTILRI 92

Query: 62  YCQTGD---FESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
             +T D       + +F  M      + + F+F  VL+ACA  + LR GK++H   ++  
Sbjct: 93  LAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFG 152

Query: 114 GCKDVIIESALVDLYAKCG------------CVDF------------------------- 136
             +D  + S LV +Y  C              VDF                         
Sbjct: 153 FHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMID 212

Query: 137 ----------AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
                     A  +F +MP R++++WN MISG+AQNG   EA+ +F +M      P++V+
Sbjct: 213 GQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVT 272

Query: 187 FIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
            + VL A + +G ++ G+  H  +   +  I   +   + +VD+  + G +++A  + E 
Sbjct: 273 LVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLG--SALVDMYSKCGSIDKALQVFET 330

Query: 246 ADCRHDSSLWEVLLGA 261
              R ++  W  ++GA
Sbjct: 331 LPKR-NAITWSAIIGA 345


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 209/361 (57%), Gaps = 37/361 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK VH  V  LGL  N+ +++ +V +Y  CG +  + +VFDKM +++ ++ + ++  
Sbjct: 129 VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIAR 188

Query: 62  YCQTGDFESVIRIFREMEE----------------------IDLF-------------SF 86
             + GD E   ++F EM E                      IDLF             + 
Sbjct: 189 LVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTV 248

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             VL ACA +  L LG+ +H  +  RSG  K++ + + L+D+Y KCGC++ A +IF  M 
Sbjct: 249 VAVLVACADMGNLVLGRRIH-DFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME 307

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R +++W++MI+G A +GR E+AL +F+ M   G KP+ V+FIG+L ACSHMG++++GRK
Sbjct: 308 ERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRK 367

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +FASMT++Y I P+IEHY CMVDL  RAGLL+EA   I N     +  +W  LLG C   
Sbjct: 368 YFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVH 427

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           +N  +AE   + + +L P     YV+L N+Y   GRW D  ++R LM+  GVKK PG S 
Sbjct: 428 KNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSS 487

Query: 326 I 326
           I
Sbjct: 488 I 488



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 128/265 (48%), Gaps = 43/265 (16%)

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           L+ + +       I +F  + E D+    ++   VL+AC+ L  +R GK VH  Y+ + G
Sbjct: 85  LRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVH-GYVEKLG 143

Query: 115 CK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN-------------------- 153
            + ++ +++ +V LYA CG +  A ++F +MP R++ITWN                    
Sbjct: 144 LQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFA 203

Query: 154 -----------SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
                      SMI G+AQ G+ +EA+ +F +M + G  P+ V+ + VL AC+ MG +  
Sbjct: 204 EMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVL 263

Query: 203 GRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           GR+ H  S    Y  +  I   N ++D+  + G LE+A  + +N + R   S W  ++  
Sbjct: 264 GRRIHDFSNRSGY--EKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVS-WSAMIAG 320

Query: 262 CTTFRNAHVAERVAKKIME--LKPD 284
                 A  A  +  K++   +KP+
Sbjct: 321 LAAHGRAEDALALFNKMINTGVKPN 345



 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 73/178 (41%), Gaps = 2/178 (1%)

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           K++H   ++ +     +  S +  + A      +A  IF  +    +  WN+ +  FA+ 
Sbjct: 32  KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEG 91

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
               +A+ +F  + E    PDH +   VL ACS + L  R  K      ++  ++  +  
Sbjct: 92  DSPADAISLFYRLREFDISPDHYTCSFVLKACSRL-LDVRNGKIVHGYVEKLGLQSNMFL 150

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
            N +V L    G +  A  + +    R D   W +++       +A  A ++  ++ E
Sbjct: 151 QNMIVHLYALCGEIGVARKVFDKMPQR-DVITWNIMIARLVKMGDAEGAYKLFAEMPE 207


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 205/371 (55%), Gaps = 39/371 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  +H  VI  GL  +  V S+L+DMYGKC    E  +VFD+M   +  S +A + G
Sbjct: 266 LVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFG 325

Query: 62  YCQTGDFESVIRIFREM--------------------------EEIDLF----------- 84
             + G  ES +R+FR++                          E ++LF           
Sbjct: 326 LSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPN 385

Query: 85  --SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
             +   +L AC  +AAL  GK  HC  +RR    DV + SAL+D+YAKCG +  +   F 
Sbjct: 386 SVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFD 445

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            +P +NL+ WN++I+G+A +G+ +EA+ IFD M   G KPD +SF  VLSACS  GL + 
Sbjct: 446 GIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEE 505

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           G  +F SM+ +Y I+ ++EHY CMV LL RAG LE+A  +I       D+ +W  LL +C
Sbjct: 506 GSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSC 565

Query: 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
               N  + E  A+K+ EL+P    +Y+LL N+Y + G WN+  ++R +MK  G++K PG
Sbjct: 566 RVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPG 625

Query: 323 KSWIEANSKLN 333
            SWIE  +K++
Sbjct: 626 CSWIEVKNKVH 636



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 121/274 (44%), Gaps = 40/274 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK  ++VH      G   +  V+SSLV MY KC  + ++HRVFD+M + + VS SAL+  
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAA 189

Query: 62  YCQTGDFESVIRIFREME---------------------------------------EID 82
           Y + G  +   R+F EM                                        E D
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD 249

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
             +   VL A   L  L +G  +H   I++    D  + SAL+D+Y KC C     Q+F 
Sbjct: 250 GTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFD 309

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           QM   ++ + N+ I G ++NG+ E +LR+F  + + G + + VS+  +++ CS  G    
Sbjct: 310 QMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIE 369

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             + F  M +   +KP      C++   G    L
Sbjct: 370 ALELFREM-QIAGVKPNSVTIPCLLPACGNIAAL 402



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 110/213 (51%), Gaps = 4/213 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L Q ++ HA ++  GL  +  + + L+  Y       ++  V D + + N  S S L+  
Sbjct: 29  LSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYA 88

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKD 117
           + +   F   +  F +M    L     VL    +ACAGL+AL+  ++VH          D
Sbjct: 89  FSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSD 148

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             ++S+LV +Y KC  +  AH++F +M   ++++W+++++ +A+ G  +EA R+F +M +
Sbjct: 149 SFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGD 208

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
            G +P+ +S+ G+++  +H GL       F  M
Sbjct: 209 SGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241



 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 23/109 (21%), Positives = 48/109 (44%)

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
           A+L   ++ H   ++     D  + + L+  YA   C   A  +   +P  N+ +++++I
Sbjct: 27  ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             F++  +   AL  F  M   G  PD+      + AC+ +  +   R+
Sbjct: 87  YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQ 135


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 200/333 (60%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+H  +I   L     V S+++DMY KCG +D + RVF+++ +K+++  ++++  
Sbjct: 377 LNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITS 436

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G     I +FR+M       D  S    L ACA L AL  GKE+H   I+     D
Sbjct: 437 CSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSD 496

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  ES+L+D+YAKCG ++F+ ++F +M  +N ++WNS+IS +  +G  +E L +F +M  
Sbjct: 497 LYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLR 556

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PDHV+F+G++SAC H G +D G +++  MT+EY I  ++EHY C+ D+ GRAG L 
Sbjct: 557 NGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLH 616

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I +     D+ +W  LLGAC    N  +AE  +K + +L P     YVLL NV  
Sbjct: 617 EAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQA 676

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
             G+W    K+R++MK  GV+K+PG SWIE N+
Sbjct: 677 GAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNN 709



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 143/264 (54%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK  KE+H  +I   +  +V ++S+L+D+Y KC  V+ + +   +    ++V  + ++ G
Sbjct: 276 LKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISG 335

Query: 62  YCQTGDFESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  +  FR    E  +    +F  +  A AGLAAL LGKE+H   I+    + 
Sbjct: 336 YVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEK 395

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SA++D+YAKCG +D A ++F ++  ++ I WNSMI+  +QNGR  EA+ +F  M  
Sbjct: 396 CHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGM 455

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GT+ D VS  G LSAC+++  +  G++    M K   ++  +   + ++D+  + G L 
Sbjct: 456 EGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG-PLRSDLYAESSLIDMYAKCGNLN 514

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            +  + +    +++ S W  ++ A
Sbjct: 515 FSRRVFDRMQEKNEVS-WNSIISA 537



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 113/203 (55%), Gaps = 10/203 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K GK VH  V  +GL  +V V SSL+ +Y + G + ++  +FD + +K+SV  + +L G
Sbjct: 74  VKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNG 133

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + GD  + I+IF EM   ++     +F  VL  CA  A L LG ++H   +   GC  
Sbjct: 134 YVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAV---GCGL 190

Query: 117 --DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D  + + L+ +Y+KC C+  A ++F  +P  +L++WN +ISG+ QNG   EA  +F  
Sbjct: 191 ELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRG 250

Query: 175 MTEGGTKPDHVSFIGVLSACSHM 197
           M   G KPD ++F   L   + +
Sbjct: 251 MISAGIKPDSITFASFLPCVNEL 273



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 132/266 (49%), Gaps = 6/266 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H   +  GL  +  V ++L+ MY KC  +  + ++FD + + + VS + ++ G
Sbjct: 175 LDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISG 234

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G       +FR M     + D  +F   L     L +L+  KE+H   IR +   D
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLD 294

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V ++SAL+D+Y KC  V+ A +   Q    + +   +MISG+  NG+ +EAL  F  + +
Sbjct: 295 VFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQ 354

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP  V+F  +  A + +  ++ G++   S+ K  ++  K    + ++D+  + G L+
Sbjct: 355 ERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLD 413

Query: 238 EAETLIENADCRHDSSLWEVLLGACT 263
            A   + N     D+  W  ++ +C+
Sbjct: 414 LA-CRVFNRITEKDAICWNSMITSCS 438



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 101/181 (55%), Gaps = 6/181 (3%)

Query: 30  MYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFS 85
           MY + G + ++  +F  +    + + + +++G+   G F   +  + +M       D ++
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQM 144
           F  V++AC GL ++++GK VH + +   G K DV + S+L+ LYA+ G +  A  +F  +
Sbjct: 61  FPYVVKACCGLKSVKMGKIVH-ETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P ++ + WN M++G+ +NG    A++IF +M     KP+ V+F  VLS C+   ++D G 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 205 K 205
           +
Sbjct: 180 Q 180



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           +Y + G +  A  +F  + +     WN MI GF   G+   AL  +  M   G  PD  +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
           F  V+ AC  +  +  G K          +K  +   + ++ L    G L +A+ L +N 
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 247 DCRHDSSLWEVLL 259
             + DS LW V+L
Sbjct: 120 P-QKDSVLWNVML 131


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 131/316 (41%), Positives = 196/316 (62%), Gaps = 6/316 (1%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
            +V + ++L+DMY KCG    + ++F  M  KN VS ++++ G    G F+  + +FR M
Sbjct: 271 SDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRM 330

Query: 79  EEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGC 133
           + + L    +    VL +CA L  L LGK VH  YI ++  K D  + +ALVD+YAKCG 
Sbjct: 331 QTMGLKPDSVTLVGVLNSCANLGDLELGKWVH-SYIDKNHMKADGYVANALVDMYAKCGS 389

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           +D A  +F  M  +++ ++ +MI GFA +G+ + AL IF +M   G +PDHV+ +GVLSA
Sbjct: 390 IDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSA 449

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           CSH GL++ GR+HF  M++ Y ++P+ EHY CMVDLLGRAGL+ EAE          D+S
Sbjct: 450 CSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDAS 509

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           +W  LLGAC       + E V +K++E++P+   +Y+L+ N+Y +  RW DA K R  MK
Sbjct: 510 VWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMK 569

Query: 314 YSGVKKMPGKSWIEAN 329
            + +KK PG S IE +
Sbjct: 570 QNNIKKTPGCSSIEVD 585



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 144/259 (55%), Gaps = 8/259 (3%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++HA  I  GL  N+ V+++L+  Y   G ++   +VFD+    + +S + L+Q Y + G
Sbjct: 159 QIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMG 218

Query: 67  -DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEV--HCQYIRRSGCKDVIIESA 123
              E++   FR     D  +  +VL AC+ L    LGK++  +  +       DV + +A
Sbjct: 219 YPSEAIAAFFRMNCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNA 278

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L+D+Y KCG    A Q+F  MPV+NL++WNSMISG A  G  +EAL +F  M   G KPD
Sbjct: 279 LLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPD 338

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAET 241
            V+ +GVL++C+++G ++ G+   + + K +    K + Y  N +VD+  + G +++A  
Sbjct: 339 SVTLVGVLNSCANLGDLELGKWVHSYIDKNHM---KADGYVANALVDMYAKCGSIDQAFM 395

Query: 242 LIENADCRHDSSLWEVLLG 260
           + +   C+   S   +++G
Sbjct: 396 VFQAMKCKDVYSYTAMIVG 414



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 144/321 (44%), Gaps = 33/321 (10%)

Query: 13  ITLGLCGNVVVESSLVDMYGKCGLVDESHR----VFDKMLKKNSVSSSALLQGYCQTGDF 68
           IT  L  +V +  S+ +++    L +  H+    +F+ +++  S S++           F
Sbjct: 70  ITSLLQQDVHLADSIQNLWYASSLANFCHQNPVYIFNAIIQSLSTSNNT----------F 119

Query: 69  ESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
             +  ++R+M  I    D ++   +L+AC+   A     ++H   I+     ++ +++ L
Sbjct: 120 THIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTL 179

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +  YA  G ++   ++F Q P  +LI+W ++I  +++ G   EA+  F  M       D 
Sbjct: 180 MRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADR 236

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
           ++ + VLSACS +G    G+K  A M    + +   +   N ++D+  + G    A  L 
Sbjct: 237 MTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLF 296

Query: 244 ENADCRHDSSLWEVLLGACT---TFRNA-HVAERVAKKIMELKPDCHLSYVLLDNVYR-- 297
                ++  S W  ++        F+ A H+  R+  + M LKPD      +L++     
Sbjct: 297 HLMPVKNLVS-WNSMISGLAHQGLFKEALHMFRRM--QTMGLKPDSVTLVGVLNSCANLG 353

Query: 298 --AVGRWNDAFKIRTLMKYSG 316
              +G+W  ++  +  MK  G
Sbjct: 354 DLELGKWVHSYIDKNHMKADG 374



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH+ +    +  +  V ++LVDMY KCG +D++  VF  M  K+  S +A++ G
Sbjct: 355 LELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVG 414

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G  +  + IF EM  +    D  +   VL AC+    L  G+  H Q + R     
Sbjct: 415 FAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRR-HFQDMSRLYHLQ 473

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMI 156
              E    +VDL  + G +  A     +MP V +   W S++
Sbjct: 474 PQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLL 515


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/327 (39%), Positives = 203/327 (62%), Gaps = 4/327 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GKE+HA+ +  GL  +V   ++L++MY K G + ++ +VFD+M K++ VS +AL+ GY  
Sbjct: 366 GKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYAD 425

Query: 65  TGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     F +  ++ ++  E +  ++  VL+AC+   AL+ GKE+H + ++     D+ +
Sbjct: 426 CGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAV 485

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+ +Y KCG V+ A ++   M  R+++TWN++I G AQNGRG EAL+ F+ M     
Sbjct: 486 ANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEM 545

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +P+  +F+ V+SAC    L++ GR+ FASM K+Y I P  +HY CMVD+L RAG L EAE
Sbjct: 546 RPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAE 605

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            +I     +  +++W  LL AC    N  + E+ A++ ++L+P    +YV L  +Y A G
Sbjct: 606 DVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAG 665

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            W D  K+R LMK  GVKK PG+SWIE
Sbjct: 666 MWRDVAKLRKLMKERGVKKEPGRSWIE 692



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 144/263 (54%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+EVH +V+  GL  N  V ++L+ MY KCG V ++ RVFD M  ++ VS + L   
Sbjct: 161 LNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 220

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y ++G  +  ++ +  M +  +     ++  VL AC  LAAL  GK++H Q +      D
Sbjct: 221 YAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSD 280

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL  +Y KCG V  A ++F  +P R++I WN+MI G   +G+ EEA  +F  M +
Sbjct: 281 VRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLK 340

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               PD V+++ +LSAC+  G +  G++  A   K+  +   +   N ++++  +AG ++
Sbjct: 341 ECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVS-DVRFGNALINMYSKAGSMK 399

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +A  + +    R D   W  L+G
Sbjct: 400 DARQVFDRMPKR-DVVSWTALVG 421



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 142/263 (53%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+VH  ++  G+  NV + ++L+ +Y  CG V+E+ R+FDK   K+ VS + ++ G
Sbjct: 60  LAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISG 119

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +    +F  M+    E D F+F  +L AC+  AAL  G+EVH + +      +
Sbjct: 120 YAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANN 179

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ +YAKCG V  A ++F  M  R+ ++W ++   +A++G  +E+L+ +  M +
Sbjct: 180 ATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ 239

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P  ++++ VLSAC  +  +++G++  A +  E      +     +  +  + G ++
Sbjct: 240 EGVRPSRITYMNVLSACGSLAALEKGKQIHAQIV-ESEHHSDVRVSTALTKMYIKCGAVK 298

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +A  + E    R D   W  ++G
Sbjct: 299 DAREVFECLPNR-DVIAWNTMIG 320



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 141/263 (53%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++HA+++      +V V ++L  MY KCG V ++  VF+ +  ++ ++ + ++ G
Sbjct: 262 LEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGG 321

Query: 62  YCQTGDFESVI----RIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
              +G  E       R+ +E    D  ++  +L ACA    L  GKE+H + ++     D
Sbjct: 322 LVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSD 381

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   +AL+++Y+K G +  A Q+F +MP R++++W +++ G+A  G+  E+   F  M +
Sbjct: 382 VRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQ 441

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + + ++++ VL ACS+   +  G++  A + K   I   +   N ++ +  + G +E
Sbjct: 442 QGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKA-GIFADLAVANALMSMYFKCGSVE 500

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +A  + E    R D   W  L+G
Sbjct: 501 DAIRVSEGMSTR-DVVTWNTLIG 522



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 102/184 (55%), Gaps = 6/184 (3%)

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAH 138
           ++D + +  +L++C     L +GK+VH ++I R G K +V I + L+ LY  CG V+ A 
Sbjct: 41  QVDSYDYVKLLQSCVKAKDLAVGKQVH-EHILRFGMKPNVYIINTLLKLYVHCGSVNEAR 99

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F +   +++++WN MISG+A  G G+EA  +F  M + G +PD  +F+ +LSACS   
Sbjct: 100 RLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPA 159

Query: 199 LIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
            ++ GR+ H   M  E  +       N ++ +  + G + +A  + +    R + S W  
Sbjct: 160 ALNWGREVHVRVM--EAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVS-WTT 216

Query: 258 LLGA 261
           L GA
Sbjct: 217 LTGA 220


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 135/337 (40%), Positives = 199/337 (59%), Gaps = 5/337 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RL +GK VH   I   +  +V V SSL+D+Y KCG V+ + ++F  + K   VS + ++ 
Sbjct: 323 RLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMIS 382

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY   G     + +F EM     E D  +F  VL AC+ LAAL  GKE+H   I +    
Sbjct: 383 GYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDN 442

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + ++  AL+D+YAKCG VD A  +F  +P R+L++W SMI+ +  +G    AL +F +M 
Sbjct: 443 NEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEML 502

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +   KPD V+F+ +LSAC H GL+D G  +F  M   Y I P++EHY+C++DLLGRAG L
Sbjct: 503 QSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRL 562

Query: 237 EEA-ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            EA E L +N + R D  L   L  AC   RN  +   +A+ +++  PD   +Y+LL N+
Sbjct: 563 HEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNM 622

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           Y +  +W++   +R+ MK  G+KK PG SWIE N K+
Sbjct: 623 YASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKI 659



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 161/289 (55%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G E+H ++I  G   +  + S+LVDMYGKCG ++ +  +F++M KK  V+ ++++ G
Sbjct: 223 LNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISG 282

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   GD  S I++F+ M     +  L +   ++  C+  A L  GK VH   IR     D
Sbjct: 283 YGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPD 342

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S+L+DLY KCG V+ A +IF  +P   +++WN MISG+   G+  EAL +F +M +
Sbjct: 343 VFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRK 402

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              + D ++F  VL+ACS +  +++G K   ++  E ++         ++D+  + G ++
Sbjct: 403 SYVESDAITFTSVLTACSQLAALEKG-KEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVD 461

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           EA ++ +    R D   W  ++ A  +  +A+ A  +  ++++  +KPD
Sbjct: 462 EAFSVFKCLPKR-DLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPD 509



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 129/248 (52%), Gaps = 5/248 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R   GK +H  +I  GL  ++VV SSLV MYGKC   +++  +F++M +K+    + ++ 
Sbjct: 121 RYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVIS 180

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y Q+G+F+  +  F  M     E +  +    + +CA L  L  G E+H + I      
Sbjct: 181 CYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLL 240

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  I SALVD+Y KCG ++ A +IF QMP + ++ WNSMISG+   G     +++F  M 
Sbjct: 241 DSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMY 300

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP   +   ++  CS    +  G K     T   RI+P +   + ++DL  + G +
Sbjct: 301 NEGVKPTLTTLSSLIMVCSRSARLLEG-KFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKV 359

Query: 237 EEAETLIE 244
           E AE + +
Sbjct: 360 ELAEKIFK 367



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 9/251 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SALLQ 60
           LKQGK +H KV+TLGL  ++ +  +L++ Y  C L D +  VFD M     +S  + L+ 
Sbjct: 19  LKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMA 78

Query: 61  GYCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           GY +   +   + +F ++        D +++  V +AC GL    LGK +H   I+    
Sbjct: 79  GYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLM 138

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D+++ S+LV +Y KC   + A  +F +MP +++  WN++IS + Q+G  ++AL  F  M
Sbjct: 139 MDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLM 198

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G +P+ V+    +S+C+ +  ++RG + H   +   + +   I   + +VD+ G+ G
Sbjct: 199 RRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFIS--SALVDMYGKCG 256

Query: 235 LLEEAETLIEN 245
            LE A  + E 
Sbjct: 257 HLEMAIEIFEQ 267


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 208/369 (56%), Gaps = 46/369 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCG----------------------------- 35
           G+ +H+  I  G   N  V + L+ MY KCG                             
Sbjct: 574 GRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSE 633

Query: 36  --LVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGI----- 88
             ++D++  VF+KM K++ VS +A++  Y Q G  E  + +F     +D+ + GI     
Sbjct: 634 NYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLF-----LDMLARGIKPNQL 688

Query: 89  ----VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
               +L AC  L A++LG++ H    +      + + ++L+ +Y KCG  D    +F +M
Sbjct: 689 TVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEM 747

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P  +LITWN+++ G AQNG G+EA++IF+ M   G  PD +SF+GVL ACSH GL+D G 
Sbjct: 748 PEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGW 807

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
            HF SMT++Y I P + HY CMVDLLGRAG L EAE LIEN   + DS +WE LLGAC  
Sbjct: 808 AHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRI 867

Query: 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324
            RN  + +RVA+++ ++      +YVLL N++ + G W+   +IR LMK  G+ K PG S
Sbjct: 868 HRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGIS 927

Query: 325 WIEANSKLN 333
           WI+  +KL+
Sbjct: 928 WIQVKNKLH 936



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 37/232 (15%)

Query: 17  LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD----FESVI 72
           L  NVV  ++++  Y + G++ E+  +F KM  KNS S +A++ G+ Q  +     E +I
Sbjct: 485 LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLI 544

Query: 73  RIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKC 131
            + R        SF   L ACA +  + +G+ +H   I+ +GC+ +  + + L+ +YAKC
Sbjct: 545 ELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIK-TGCQFNSYVMNGLISMYAKC 603

Query: 132 GCV-------------------------------DFAHQIFLQMPVRNLITWNSMISGFA 160
           G V                               D A  +F +MP R++++W ++IS + 
Sbjct: 604 GNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYV 663

Query: 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           Q G GE AL +F DM   G KP+ ++   +LSAC ++G I  G +  A + K
Sbjct: 664 QAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFK 715



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 123/246 (50%), Gaps = 14/246 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF---- 75
           NV   +S+V  Y  C  + E+  +FD+M ++NSVS   ++ GY    D+     +F    
Sbjct: 294 NVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMC 353

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           R +   D   F +VL A  GL  L L   +    I+     DV++ SA+++ Y + G +D
Sbjct: 354 RTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLD 413

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A   F  MP RN  +W +MI+ FAQ GR ++A+++++ + E        +   +++A +
Sbjct: 414 LAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYA 469

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
            +G I + R  F  +     + P +  +N ++    + G+L+EA+ L +    ++ +S W
Sbjct: 470 QVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSAS-W 523

Query: 256 EVLLGA 261
             ++  
Sbjct: 524 AAMIAG 529



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 139/306 (45%), Gaps = 22/306 (7%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+++ + V  ++I      +VV  +S+++ Y + G VDE+  +FD  + KN  + + LL 
Sbjct: 186 RVEEARRVFNEMIQR----DVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLT 241

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           GY + G  E    +F  M E ++ S+  ++        L+  +++  +       K+V  
Sbjct: 242 GYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPE----KNVAS 297

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +++V  Y  C  +  A ++F QMP RN ++W  MISG+       EA  +F  M     
Sbjct: 298 WNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVA 357

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLL 236
           +PD   F+ VLSA +  GL D          +   IK   E      + +++   R G L
Sbjct: 358 RPDQSIFVVVLSAIT--GLDDL---ELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSL 412

Query: 237 EEAETLIENADCRHDSSLWEVLLGA---CTTFRNA-HVAERVAKKIMELKPDCHLSYVLL 292
           + A    E    R++ S W  ++ A   C    +A  + ERV ++ +  K     +Y  +
Sbjct: 413 DLAMHFFETMPERNEYS-WTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQV 471

Query: 293 DNVYRA 298
             + +A
Sbjct: 472 GRIQKA 477



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 91/166 (54%), Gaps = 8/166 (4%)

Query: 32  GKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLR 91
           G+ G V+E+ RVF++M++++ VS ++++ GY Q G  +    +F      ++ ++ I+L 
Sbjct: 182 GRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLT 241

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
             A    +   +EV      R    +V+  +A++  Y + G +  A ++F +MP +N+ +
Sbjct: 242 GYAKEGRIEEAREVFESMTER----NVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVAS 297

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
           WNS+++G+    R  EA  +FD M E  +    VS++ ++S   H+
Sbjct: 298 WNSVVTGYCHCYRMSEARELFDQMPERNS----VSWMVMISGYVHI 339



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 101/207 (48%), Gaps = 8/207 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G++ HA +  LG    + V +SL+ MY KCG  D    VF++M + + ++ +A+L G
Sbjct: 703 IKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMPEHDLITWNAVLVG 761

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  +  I+IF +ME      D  SF  VL AC+    +  G        ++ G   
Sbjct: 762 CAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMP 821

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
           ++   + +VDL  + G +  A  +   MPV+ + + W +++     +   E   R+ + +
Sbjct: 822 LVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERL 881

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDR 202
            +  TKP   +++ + +  +  G+ D+
Sbjct: 882 FQ-MTKPKSATYVLLSNLFASQGMWDK 907


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/331 (38%), Positives = 199/331 (60%), Gaps = 4/331 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +G +VH   +  GL  +V V +S+V+ Y KCG  D +   F+ + + NSV  + ++ G
Sbjct: 364 VAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISG 423

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G+ E  +  F +M    ++ D FS   V++A +  AA+  G+ +H   ++      
Sbjct: 424 FAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCT 483

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + SA++D+Y+KCG V+ A ++F  MP +N+++WNSMI+G+AQNG  +EAL +F +MT 
Sbjct: 484 IYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTS 543

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P  V+F+G+L ACSH GL++ GR  +  M   Y I P +EH  CMVDLLGRAG LE
Sbjct: 544 SGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLE 603

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE  + ++    +  +W  LL AC   +N+ V  R A+  + L+P    SY  L N+Y 
Sbjct: 604 EAEAFLLSSSFSKEPGIWGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYA 663

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
           +   W++  +IR LMK  GV+K PG SWIE+
Sbjct: 664 SKELWSEVSRIRDLMKDMGVEKEPGCSWIES 694



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 134/243 (55%), Gaps = 5/243 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+  HAKV+ LG   +V V ++LVDMY K   +++  R F +M K+N VS +AL+ GY  
Sbjct: 266 GRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSL 325

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G +E  +R++ +++    E D F+F  +  +C+  + +  G +VH   ++     DV +
Sbjct: 326 MGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSV 385

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +++V+ Y+KCG  D A + F  +   N + W  +ISGFAQNG GE+AL  F  M +   
Sbjct: 386 GNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFID 445

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           K D  S   V+ A S    +++GR H  +   +  +   I   + ++D+  + G++E+A+
Sbjct: 446 KTDEFSSSSVIKAVSSWAAVEQGR-HLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQ 504

Query: 241 TLI 243
            + 
Sbjct: 505 KVF 507



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 139/256 (54%), Gaps = 8/256 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK VH   + +G   ++ V  S V MY KCG++D +   FD++  K+ V+ + ++ GY Q
Sbjct: 165 GKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQ 224

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               E  I +F +ME    + +  +F  VL+A   ++   +G+  H + ++     DV +
Sbjct: 225 NCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFV 284

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVD+Y+K   ++   + F +M  RNL+++N++I+G++  G+ EEALR++  +   G 
Sbjct: 285 ATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGM 344

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           +PD  +F+G+ S+CS    +  G + H  S+  ++ +   +   N +V+   + G  + A
Sbjct: 345 EPDSFTFVGLFSSCSVSSTVAEGAQVHVHSV--KFGLDSDVSVGNSIVNFYSKCGFTDSA 402

Query: 240 ETLIENADCRHDSSLW 255
               E+ + R +S  W
Sbjct: 403 LEAFESIN-RPNSVCW 417



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 8/220 (3%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R      +H  ++  G    + V S L+ MY K   + E+  +FD M +++ VS ++++ 
Sbjct: 56  RPSLATSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIA 115

Query: 61  GYCQTGDFESVIRIFREMEE--------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           GY Q G  E    +F  M          +  F+   VL+AC GL   R+GK VH   ++ 
Sbjct: 116 GYSQRGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKI 175

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               D+ +  + V +Y KCG +D A   F Q+  ++++ WN+MI+G+AQN   EEA+ +F
Sbjct: 176 GFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELF 235

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
             M   G KP+  +F  VL A + M     GR   A + K
Sbjct: 236 YQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLK 275



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 4/133 (3%)

Query: 47  MLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLG 102
           ML+ N V  ++ +    + G  +  +  F +M     E +  ++   + ACA      L 
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
             +HC  +++     + + S L+ +Y+K   +  A  +F  MP R+ ++WNSMI+G++Q 
Sbjct: 61  TSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQR 120

Query: 163 GRGEEALRIFDDM 175
           G  EEA  +F  M
Sbjct: 121 GLNEEACGLFCSM 133


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 134/331 (40%), Positives = 207/331 (62%), Gaps = 6/331 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LKQGKE+H  V+  GL  +VVV S+L+ MY  CG + E+  +F+    K+ +  ++++ G
Sbjct: 350 LKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVG 409

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y   GDFES    FR +       +  +   +L  C  + ALR GKE+H  Y+ +SG   
Sbjct: 410 YNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIH-GYVTKSGLGL 468

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V + ++L+D+Y+KCG ++   ++F QM VRN+ T+N+MIS    +G+GE+ L  ++ M 
Sbjct: 469 NVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMK 528

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E G +P+ V+FI +LSACSH GL+DRG   + SM  +Y I+P +EHY+CMVDL+GRAG L
Sbjct: 529 EEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDL 588

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           + A   I       D++++  LLGAC       + E +A++I++LK D    YVLL N+Y
Sbjct: 589 DGAYKFITRMPMTPDANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVLLSNLY 648

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            +  RW D  K+R+++K  G++K PG SWI+
Sbjct: 649 ASGKRWEDMSKVRSMIKDKGLEKKPGSSWIQ 679



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 135/265 (50%), Gaps = 6/265 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G  +    +  G   ++ V ++++DMY KCG   E+HRVF  M+  + VS S L+ G
Sbjct: 249 VKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAG 308

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV----LRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q   ++   +++  M  + L +  IV    L A   L  L+ GKE+H   ++     D
Sbjct: 309 YSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSD 368

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V++ SAL+ +YA CG +  A  IF     ++++ WNSMI G+   G  E A   F  +  
Sbjct: 369 VVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWG 428

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +P+ ++ + +L  C+ MG + +G++    +TK   +   +   N ++D+  + G LE
Sbjct: 429 AEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKS-GLGLNVSVGNSLIDMYSKCGFLE 487

Query: 238 EAETLIENADCRHDSSLWEVLLGAC 262
             E + +    R+ ++ +  ++ AC
Sbjct: 488 LGEKVFKQMMVRNVTT-YNTMISAC 511



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 110/212 (51%), Gaps = 10/212 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESS-----LVDMYGKCGLVDESHRVFDKMLKKNSVSS 55
            L + + +HA ++ LG        SS     LV++Y   G +  +   F  +  K  ++ 
Sbjct: 42  NLHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHAFLTFRALPHKPIIAW 101

Query: 56  SALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           +A+L+G    G F   I  +  M +     D +++ +VL+AC+ L AL+LG+ VH + + 
Sbjct: 102 NAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVH-ETMH 160

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                +V ++ A++D++AKCG V+ A ++F +MP R+L +W ++I G   NG   EAL +
Sbjct: 161 GKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLL 220

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           F  M   G  PD V    +L AC  +  +  G
Sbjct: 221 FRKMRSEGLMPDSVIVASILPACGRLEAVKLG 252



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 126/230 (54%), Gaps = 5/230 (2%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
            NV V+ +++DM+ KCG V+++ R+F++M  ++  S +AL+ G    G+    + +FR+M
Sbjct: 165 ANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKM 224

Query: 79  EEIDLFSFGIV----LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
               L    ++    L AC  L A++LG  +    +R     D+ + +A++D+Y KCG  
Sbjct: 225 RSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDP 284

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
             AH++F  M   ++++W+++I+G++QN   +E+ +++  M   G   + +    VL A 
Sbjct: 285 LEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPAL 344

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
             + L+ +G++    + KE  +   +   + ++ +    G ++EAE++ E
Sbjct: 345 GKLELLKQGKEMHNFVLKE-GLMSDVVVGSALIVMYANCGSIKEAESIFE 393



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 13/184 (7%)

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           S LV++Y   G +  A   F  +P + +I WN+++ G    G   +A+  +  M + G  
Sbjct: 71  SQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVT 130

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD+ ++  VL ACS +  +  GR  +   T   + K  +     ++D+  + G +E+A  
Sbjct: 131 PDNYTYPLVLKACSSLHALQLGR--WVHETMHGKTKANVYVQCAVIDMFAKCGSVEDARR 188

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVA--KKIME--LKPDCHLSYVLLDNVYR 297
           + E    R D + W  L+  C T  N    E +   +K+    L PD     V++ ++  
Sbjct: 189 MFEEMPDR-DLASWTALI--CGTMWNGECLEALLLFRKMRSEGLMPDS----VIVASILP 241

Query: 298 AVGR 301
           A GR
Sbjct: 242 ACGR 245


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 146/383 (38%), Positives = 212/383 (55%), Gaps = 59/383 (15%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
            GK VH   +  G   ++ V ++LVDMY KCG+VDE+ +VFD++ +K+ VS +A++ GY 
Sbjct: 31  HGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYS 90

Query: 64  QTGDFESVIRIFREMEE-----------------------------------------ID 82
           Q G FE  + +F +M E                                         ++
Sbjct: 91  QIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALE 150

Query: 83  LFSF-----GIV----------LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA--LV 125
           LFS+     G+V          L ACA LAALRLG+++H  YI R+      +  A  L+
Sbjct: 151 LFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHA-YILRNHFDSAFLYVANCLI 209

Query: 126 DLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185
           D+YAK G +D A  +F  +  +N ++W S+++G+  +GRG+EAL +FD+M   G +PD V
Sbjct: 210 DMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGV 269

Query: 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
           + + VL ACSH G+ID+G + F SM+KE+ + P  EHY CMVDLLGRAG L EA  LIE 
Sbjct: 270 TLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEG 329

Query: 246 ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305
                 S +W  LL  C    N  + E  AK+++EL  +   SY LL N+Y    RW D 
Sbjct: 330 MQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDV 389

Query: 306 FKIRTLMKYSGVKKMPGKSWIEA 328
            ++R+LMK SG++K PG SW++ 
Sbjct: 390 ARVRSLMKNSGIRKRPGCSWVQG 412



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 77/118 (65%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D+ S   VL ACA + A   GK VH   +R    +D+ + +ALVD+YAKCG VD A ++F
Sbjct: 12  DVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVF 71

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
            ++  +++++WN+M++G++Q GR E+AL +F+ M E   + + VS+  V++A +  GL
Sbjct: 72  DRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGL 129


>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Brachypodium distachyon]
          Length = 614

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 206/330 (62%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+G+++H  V+  GL  ++ VES L+D+Y KCGL++++  VF    + + +S + +L G
Sbjct: 239 LKEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVG 298

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  E    +F EM      ID      VL A    A   LGK++H   I++   ++
Sbjct: 299 FAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVIKKCFGRN 358

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + + L+++Y+KCG ++ + Q+F + P +N I+WNS+I+ FA++G+G E  ++F+ M  
Sbjct: 359 IYVCNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKA 418

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P  V+F+ +L  CSH+G   +G +   SM+ EY I P++EHY C+VD+LGRAGLLE
Sbjct: 419 DGANPTDVTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRVEHYACVVDMLGRAGLLE 478

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A + IE+   +  + LW+ L+GAC+   N+ + +  A+K++ L PD   +YVLL N+Y 
Sbjct: 479 DARSFIEDGPFKDSALLWQALMGACSFRGNSEIGKYAAEKLLHLDPDSPAAYVLLSNIYS 538

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           + GRW+D  ++   M+  G++K  GKSWIE
Sbjct: 539 SEGRWDDRARVMKSMREMGLRKDTGKSWIE 568



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 125/257 (48%), Gaps = 5/257 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH  V++ G    V V ++LV  Y +C     + R F  M ++N ++ +A++ G  +   
Sbjct: 145 VHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERAFHGMAERNVITWTAMISGMAREEL 204

Query: 68  FESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           ++  I +F++M    + +  ++   L ACAG  AL+ G+++H   ++     D+ +ES L
Sbjct: 205 YKDSIVLFQQMRRTVDANSATYSSSLLACAGSLALKEGQQIHGLVVKAGLETDLHVESGL 264

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +DLY+KCG ++    +F      + I+   ++ GFAQNG  E+A  +F +M   G   D 
Sbjct: 265 MDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVGFAQNGLEEKAFELFAEMAGEGILIDT 324

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
                VL A         G++  A + K+      I   N ++++  + G LEE+  +  
Sbjct: 325 NMVSAVLGAFGASAPFALGKQIHALVIKKC-FGRNIYVCNGLINMYSKCGELEESIQVFN 383

Query: 245 NADCRHDSSLWEVLLGA 261
               ++  S W  ++ A
Sbjct: 384 ETPSKNSIS-WNSIIAA 399



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 116/246 (47%), Gaps = 8/246 (3%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80
           +V  ++LV MY +CG   E+ RVFD+M  ++SVS ++L+             R+ R    
Sbjct: 55  LVAWNALVSMYARCGRHAEAARVFDEMRIRDSVSWNSLIGSSGAEDALSQFRRMLRSSSS 114

Query: 81  I------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
                  D  +F  VL ACA  A+L     VH   + R    +V + +ALV  Y +C   
Sbjct: 115 PGGGVSCDHATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESP 174

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
             A + F  M  RN+ITW +MISG A+    ++++ +F  M       +  ++   L AC
Sbjct: 175 GSAERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRR-TVDANSATYSSSLLAC 233

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           +    +  G++    + K   ++  +   + ++DL  + GL+E+  ++        + SL
Sbjct: 234 AGSLALKEGQQIHGLVVKA-GLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISL 292

Query: 255 WEVLLG 260
             +L+G
Sbjct: 293 TVILVG 298


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/334 (39%), Positives = 199/334 (59%), Gaps = 4/334 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G E+H      G   +V V SSL+DMY  C   D S +VFD +  ++++  +++L G
Sbjct: 189 VRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAG 248

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  +  + +FR M    +     +F  ++ AC  LA+L LGK++H   IR     +
Sbjct: 249 CAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGN 308

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I S+L+D+Y KCG V  A +IF ++   ++++W +MI G A +G   EAL +FD M  
Sbjct: 309 VFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMEL 368

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  KP+H++F+ VL+ACSH GL+D+G K+F SM+  Y I P +EH+  + D LGR G LE
Sbjct: 369 GNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLE 428

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I     +  +S+W  LL AC   +N  +AE VAKKI +L+P    S+++L N Y 
Sbjct: 429 EAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYS 488

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           + GRWN+A  +R  M+  G++K P  SWIE  +K
Sbjct: 489 SSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNK 522



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 114/219 (52%), Gaps = 18/219 (8%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMY--------------GKCGLVDESHRVFDKMLKK 50
           G  +HA  +  G   +    ++L+++Y              G   +++   +VFD+M +K
Sbjct: 77  GASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEK 136

Query: 51  NSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVH 106
           + VS + L+ G  ++G     + + REM     + D F+   VL   A  A +R G E+H
Sbjct: 137 DVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELH 196

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
               R     DV + S+L+D+YA C   D++ ++F  +PVR+ I WNSM++G AQNG  +
Sbjct: 197 GFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVD 256

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           EAL +F  M   G KP  V+F  ++ AC ++  +  G++
Sbjct: 257 EALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQ 295



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 26/229 (11%)

Query: 66  GDFESVIRIFREMEEID--------LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           GDF   I +F  M   D        L S    L++CA L    LG  +H   +R     D
Sbjct: 33  GDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGAFAD 92

Query: 118 VIIESALVDLYAKCGC--------------VDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
               +AL++LY K                 ++   ++F +MP +++++WN+++ G A++G
Sbjct: 93  RFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESG 152

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
           R  EAL +  +M   G KPD  +   VL   +    + RG +     T+       +   
Sbjct: 153 RHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRN-GFHDDVFVG 211

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
           + ++D+       + +  + +N   R D+ LW  +L  C   +N  V E
Sbjct: 212 SSLIDMYANCTRTDYSVKVFDNLPVR-DAILWNSMLAGCA--QNGSVDE 257


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/333 (42%), Positives = 195/333 (58%), Gaps = 7/333 (2%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALL 59
           L  G+++H +V+  G L  + +V  SL+ MY       +S  +F ++   K  V  +AL+
Sbjct: 627 LNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALI 686

Query: 60  QGYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY Q    E  ++ ++ M   ++     +F  VLRACAG+++L+ G+EVH         
Sbjct: 687 SGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFN 746

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN-LITWNSMISGFAQNGRGEEALRIFDD 174
            D I  S+L+D+YAKCG V  + Q+F +MP RN +I+WNSMI G A+NG  EEAL IF  
Sbjct: 747 MDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQ 806

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M +    PD V+F+GVLSACSH G +  GRK F  M   Y+++P+++H  CMVD+LGR G
Sbjct: 807 MEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWG 866

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L EAE  I    C+ D  LW  LLGAC    +    +R A K+MELKP    SYVLL  
Sbjct: 867 FLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRGKRAANKLMELKPQSSSSYVLLSG 926

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           +Y     W+ A  +R  MK  GVKK+PG SWIE
Sbjct: 927 LYAESENWSGADSLRREMKLKGVKKLPGYSWIE 959



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 134/257 (52%), Gaps = 6/257 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           +V  K+  +G   + +   ++++ Y   G + ++ ++F ++   N V+ + ++ G+ + G
Sbjct: 229 KVFDKMQRVGHVPDQIALVTVINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRG 288

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             E  I  F E+++  L     S G VL A A L+ L  G  VH Q I+     +V + S
Sbjct: 289 FAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGS 348

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           ALV++YAKC  +D A Q+F  +  RN++ WN+M+ GFAQNG  +E +  F  M   G +P
Sbjct: 349 ALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQP 408

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           D  +F  + SAC+ +  +D G +    M K  +    +   N +VD+  ++G L+EA   
Sbjct: 409 DEFTFTSIFSACASLHYLDFGGQLHTVMIKN-KFTSNLFVANALVDMYAKSGALKEARKQ 467

Query: 243 IENADCRHDSSLWEVLL 259
            E     HD+  W  ++
Sbjct: 468 FEFMKI-HDNVSWNAII 483



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 117/208 (56%), Gaps = 4/208 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VHA+ I  GL  NV V S+LV+MY KC  +D + +VF+ + ++N V  +A+L G
Sbjct: 325 LNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGG 384

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  + V+  F  M+    + D F+F  +  ACA L  L  G ++H   I+     +
Sbjct: 385 FAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSN 444

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALVD+YAK G +  A + F  M + + ++WN++I G+ Q    +EA  +F  M  
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVS 504

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G  PD VS   ++SAC+++    +G++
Sbjct: 505 NGVLPDEVSLASIVSACANVKEFKQGQQ 532



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 127/242 (52%), Gaps = 9/242 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K +H+K + +G+    ++ + +VD+Y KCG VD + + F ++ KK+  + +++L  
Sbjct: 57  LSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSM 116

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G F +V++ F  M       + F+F +VL AC+GL  +  GK+VHC   +      
Sbjct: 117 YLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFR 176

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
              +  L+D+YAKC  +  A  +F      + ++W ++I+G+ ++G   EA+++FD M  
Sbjct: 177 SFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQR 236

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD ++ + V++A   +G +   RK F  +       P +  +N M+    + G  E
Sbjct: 237 VGHVPDQIALVTVINAYVALGRLADARKLFTQIP-----NPNVVAWNVMISGHAKRGFAE 291

Query: 238 EA 239
           EA
Sbjct: 292 EA 293



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 111/208 (53%), Gaps = 5/208 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H  +I      N+ V ++LVDMY K G + E+ + F+ M   ++VS +A++ G
Sbjct: 426 LDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVG 485

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    +    +FR M       D  S   ++ ACA +   + G++ HC  ++      
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTS 545

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               S+L+D+Y KCG V  A  +F  MP RN+++ N++I+G+  +   EEA+ +F ++  
Sbjct: 546 TCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMS-HLEEAIHLFQEIQM 604

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G KP  V+F G+L  C    +++ GR+
Sbjct: 605 VGLKPTEVTFAGLLDGCDGAFMLNLGRQ 632



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 7/227 (3%)

Query: 94  AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
           A L AL   K +H + ++       ++ + +VDLY KCG VDFA + F ++  +++  WN
Sbjct: 52  AVLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWN 111

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTK 212
           S++S +  +G     ++ F  M   G +P+  +F  VLSACS +  I+ G++ H      
Sbjct: 112 SVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKM 171

Query: 213 EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
            +  +   +    ++D+  +   L +A  + + A    D+  W  L+           A 
Sbjct: 172 GFGFRSFCQ--GGLIDMYAKCRNLRDARLVFDGA-LNLDTVSWTTLIAGYVRDGFPMEAV 228

Query: 273 RVAKKIMELK--PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
           +V  K+  +   PD  ++ V + N Y A+GR  DA K+ T +    V
Sbjct: 229 KVFDKMQRVGHVPD-QIALVTVINAYVALGRLADARKLFTQIPNPNV 274


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/311 (42%), Positives = 195/311 (62%), Gaps = 9/311 (2%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE---- 80
           +SL+  Y K GL+DE+  +F  M +KNS S +A++  Y QT  F     +F  M+     
Sbjct: 192 TSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNN 251

Query: 81  -IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAH 138
            +D F    +L AC GL AL  GK +H +YI+R+G + D  + +A+VD+Y KCGC++ A 
Sbjct: 252 VLDKFVATTMLSACTGLGALDQGKWIH-EYIKRNGIELDSKLTTAIVDMYCKCGCLEKAL 310

Query: 139 QIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
           Q+F  L +P R + +WN MI G A +G GE A+++F +M      PD ++F+ +L+AC+H
Sbjct: 311 QVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAH 370

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            GL++ GR +F+ M + Y I+P++EH+ CMVDLLGRAG++ EA  LI+      D ++  
Sbjct: 371 SGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLG 430

Query: 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
            LLGAC   RN  + E + ++++EL+P+    YVLL N+Y   G+W DA K+R LM   G
Sbjct: 431 TLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRG 490

Query: 317 VKKMPGKSWIE 327
           VKK PG S IE
Sbjct: 491 VKKAPGFSMIE 501



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 144/328 (43%), Gaps = 50/328 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDE---SHRVFDKMLKKNSVSSSAL 58
           + Q ++ H+++I LGL  +  +   L++   +    D    + ++FD + + ++   + +
Sbjct: 35  MSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTI 94

Query: 59  LQGY--CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIR- 111
           ++G+   Q     S++ ++  M +  +    F+F  +L AC     ++ G ++H    + 
Sbjct: 95  IKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACR---KIQHGMQIHAHLFKF 151

Query: 112 ----RSGCKDVIIE--------------------------SALVDLYAKCGCVDFAHQIF 141
                S C + +I                           ++L+  Y+K G +D A  IF
Sbjct: 152 GFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIF 211

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLI 200
             MP +N  +WN+M++ + Q  R  EA  +FD M  E     D      +LSAC+ +G +
Sbjct: 212 QLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGAL 271

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN--ADCRHDSSLWEVL 258
           D+G K      K   I+   +    +VD+  + G LE+A  +  +    CR  SS W  +
Sbjct: 272 DQG-KWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISS-WNCM 329

Query: 259 LGACTTFRNAHVAERVAKKI--MELKPD 284
           +G      N   A ++ K++    + PD
Sbjct: 330 IGGLAMHGNGEAAIQLFKEMERQRVAPD 357



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 7/173 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSS-SALL 59
           L QGK +H  +   G+  +  + +++VDMY KCG ++++ +VF  + L    +SS + ++
Sbjct: 271 LDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMI 330

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G    G+ E+ I++F+EME      D  +F  +L ACA    +  G+      IR  G 
Sbjct: 331 GGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGI 390

Query: 116 KDVIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
           +  +     +VDL  + G V  A ++  +MPV   +T    + G  +  R  E
Sbjct: 391 EPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIE 443


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/362 (38%), Positives = 206/362 (56%), Gaps = 36/362 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VHA+ +    C + VV+SSL+DMY KCG  D++  VFD +L KNSVS ++++ G
Sbjct: 121 LRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISG 180

Query: 62  YCQTGD--------FESVIR-----------------------IFREMEE-----IDLFS 85
           Y ++G          ++ +R                       +F EM       +D   
Sbjct: 181 YARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLV 240

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              V+  CA LA L LGK++H   I       + I +ALVD+YAKC  +  A  IF +MP
Sbjct: 241 LSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +++I+W S+I G AQ+G+ EEAL ++D+M     KP+ V+F+G+L ACSH GL+ RGR+
Sbjct: 301 RKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRE 360

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F SMT +Y I P ++HY C++DLL R+G L+EAE L++    + D   W  LL AC   
Sbjct: 361 LFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRH 420

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  +  R+A ++++LKP+   +Y+LL NVY     W    K+R LM    V+K PG S 
Sbjct: 421 NNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSS 480

Query: 326 IE 327
           I+
Sbjct: 481 ID 482



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 126/236 (53%), Gaps = 37/236 (15%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+H+++I  G   + ++ ++L+D+YGKCGL+ ++ ++FD+M  ++ VS +++L  + +  
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 67  DFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
                + +   M      + D F F  ++RAC+ L  LRLGK+VH +++    C D +++
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVK 143

Query: 122 SALVDLYAKCGCVDFAHQI-------------------------------FLQMPVRNLI 150
           S+L+D+Y KCG  D A  +                               FLQ PVRNL 
Sbjct: 144 SSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLF 203

Query: 151 TWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +W ++ISG  Q+G G  +  +F++M  EG    D +    V+  C+++ L++ G++
Sbjct: 204 SWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQ 259



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L+ CA   +     E+H Q I+    K  ++ + L+D+Y KCG +  A Q+F +MP R+ 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           ++W S+++   +       L + + M T  G +PDH  F  ++ ACS +G +  G++  A
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
                +    ++   + ++D+  + G  ++A  + ++
Sbjct: 130 RFMLSFFCDDEVVK-SSLIDMYTKCGQPDDARAVFDS 165


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 133/339 (39%), Positives = 205/339 (60%), Gaps = 8/339 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK--NSVSSSALL 59
           +++GK++HA V+  G   +    ++L+ MY     ++++ RVFD M ++  NSVS +A++
Sbjct: 110 IEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMI 169

Query: 60  QGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
             Y Q+        +F  M      +D F    +L AC GL AL  GK +H  YI +SG 
Sbjct: 170 AAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIH-GYIEKSGI 228

Query: 116 K-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
           + D  + + ++D+Y KCGC++ A ++F ++P + + +WN MI G A +G+GE A+ +F +
Sbjct: 229 ELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKE 288

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M      PD ++F+ VLSAC+H GL++ G+ +F  MT+   +KP +EH+ CMVDLLGRAG
Sbjct: 289 MEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAG 348

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
           LLEEA  LI       D+ +   L+GAC    N  + E++ KK++EL+P     YVLL N
Sbjct: 349 LLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLAN 408

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +Y + GRW D  K+R LM   GVKK PG S IE+ S ++
Sbjct: 409 LYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVD 447



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 119/275 (43%), Gaps = 24/275 (8%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K+ H+++I LGL  +                    +    +++K  ++S S  L+     
Sbjct: 37  KQYHSQIIRLGLSAD--------------------NDAMGRVIKFCAISKSGYLRWQLAR 76

Query: 66  GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV 125
                  R+  +    + F++  ++RAC    A+  GK++H   ++     D    + L+
Sbjct: 77  NCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLI 136

Query: 126 DLYAKCGCVDFAHQIFLQMPV--RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
            +Y     ++ A ++F  MP   RN ++WN+MI+ + Q+ R  EA  +FD M       D
Sbjct: 137 HMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLD 196

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
                 +LSAC+ +G +++G K      ++  I+   +    ++D+  + G LE+A  + 
Sbjct: 197 KFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVF 255

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
                +  SS W  ++G          A  + K++
Sbjct: 256 NELPQKGISS-WNCMIGGLAMHGKGEAAIELFKEM 289


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/331 (37%), Positives = 210/331 (63%), Gaps = 4/331 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+  I  GL  ++ V  +L+DMY KCG ++++H VFD+M  K  V  ++++ GY  
Sbjct: 252 GRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYAL 311

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + ++ EM +    +D F+F I++R C+ LA++   K+VH   +R     DV+ 
Sbjct: 312 HGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVA 371

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVD Y+K G VD A  +F +M  RN+I+WN++I+G+  +G GEEA+ +F+ M   G 
Sbjct: 372 NTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGM 431

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+HV+F+ VLSACS  GL +RG + F SMT+++++KP+  H+ CM++LLGR GLL+EA 
Sbjct: 432 MPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAY 491

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LI  A  +  +++W  LL AC    N  + +  A+K+  ++P+   +Y++L N+Y + G
Sbjct: 492 ALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSG 551

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           +  +A  +   +K  G++ +P  SWIE N++
Sbjct: 552 KLKEAADVFQTLKRKGLRMLPACSWIEVNNQ 582



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 136/237 (57%), Gaps = 8/237 (3%)

Query: 30  MYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF----- 84
           M+ KCG++ ++ R+FD+M  +N+VS   ++ GY  +G++    R+F  M E + +     
Sbjct: 176 MHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMRE-EFYDCGPR 234

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +F  ++RA AGL  +  G+++H   I+    +D+ +  AL+D+Y+KCG ++ AH +F +M
Sbjct: 235 TFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEM 294

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P + ++ WNS+I+G+A +G  EEAL ++ +M + G K DH +F  ++  CS +  + R +
Sbjct: 295 PDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAK 354

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +  AS+ +       +     +VD   + G +++A  + +   CR+  S W  L+  
Sbjct: 355 QVHASLVRN-GFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIIS-WNALIAG 409



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 111/250 (44%), Gaps = 43/250 (17%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + + K+VHA ++  G   +VV  ++LVD Y K G VD++  VFD+M  +N +S +AL+ G
Sbjct: 350 VARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAG 409

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  E  I +F +M    +     +F  VL AC+       G E+     R    K 
Sbjct: 410 YGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKP 469

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             +  A +++L  + G +D A+ +  + P                               
Sbjct: 470 RAMHFACMIELLGREGLLDEAYALIRKAPF------------------------------ 499

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGL 235
               +P    +  +L AC   G ++ G+  FA+  K Y ++P K+ +Y  ++++   +G 
Sbjct: 500 ----QPTANMWAALLRACRVHGNLELGK--FAA-EKLYGMEPEKLSNYIVLLNIYNSSGK 552

Query: 236 LEEAETLIEN 245
           L+EA  + + 
Sbjct: 553 LKEAADVFQT 562



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 100/203 (49%), Gaps = 8/203 (3%)

Query: 48  LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGI-----VLRACAGLAALRLG 102
           +KK+SV   + ++       +   + +F   E  D F  G      ++ AC GL ++R G
Sbjct: 92  VKKSSVGICSQIEKLVLCKKYRDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIR-G 150

Query: 103 KEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
            +  C Y+  +G + D  + + ++ ++ KCG +  A ++F +MP RN ++W ++ISG+  
Sbjct: 151 VKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVD 210

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
           +G   EA R+F  M E        +F  ++ A + + +I  GR+  +   K   +   I 
Sbjct: 211 SGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKA-GLGQDIF 269

Query: 222 HYNCMVDLLGRAGLLEEAETLIE 244
               ++D+  + G LE+A  + +
Sbjct: 270 VSCALIDMYSKCGSLEDAHCVFD 292


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 203/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +GK++HA +I      ++ V S+L+DMY KC  +  +  VFD+M +KN VS +A++ G
Sbjct: 286 INEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVG 345

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y QTG  E  ++IF +M+    + D ++ G  + ACA +++L  G + H + I       
Sbjct: 346 YGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHY 405

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + ++LV LY KCG +D + ++F +M VR+ ++W +M+S +AQ GR  E +++FD M +
Sbjct: 406 VTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQ 465

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+  GV+SACS  GL+++G+++F  MT EY I P I HY+CM+DL  R+G LE
Sbjct: 466 HGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLE 525

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I       D+  W  LL AC    N  + +  A+ ++EL P     Y LL ++Y 
Sbjct: 526 EAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYA 585

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G+W+   ++R  M+   VKK PG+SWI+   KL+
Sbjct: 586 SKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLH 621



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 164/320 (51%), Gaps = 46/320 (14%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM----------------- 47
           GK++H +VI LG    ++V S L+ MY   G + ++ +VF  +                 
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217

Query: 48  -------------LKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVL 90
                        ++K+SVS +A+++G  Q G  +  I  FREM+    ++D + FG VL
Sbjct: 218 CGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
            AC GL A+  GK++H   IR +    + + SAL+D+Y KC C+ +A  +F +M  +N++
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           +W +M+ G+ Q GR EEA++IF DM   G  PDH +    +SAC+++  ++ G +     
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKA 397

Query: 211 TKEYRIKPKIEHY----NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
                I   + HY    N +V L G+ G ++++  L    + R D+  W  ++ A   F 
Sbjct: 398 -----ITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMVSAYAQFG 451

Query: 267 NAHVAERVAKKIME--LKPD 284
            A    ++  K+++  LKPD
Sbjct: 452 RAVETIQLFDKMVQHGLKPD 471



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 134/298 (44%), Gaps = 40/298 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           N+   ++L+  Y K GL+ E    F+K+  ++ V+ + L++GY  +G   + ++ +  M 
Sbjct: 71  NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130

Query: 79  ----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
                 +   +   +L+  +    + LGK++H Q I+      +++ S L+ +YA  GC+
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190

Query: 135 DFAHQIFLQMPVRNL------------------------------ITWNSMISGFAQNGR 164
             A ++F  +  RN                               ++W +MI G AQNG 
Sbjct: 191 SDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGL 250

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
            +EA+  F +M   G K D   F  VL AC  +G I+ G++  A + +    +  I   +
Sbjct: 251 AKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT-NFQDHIYVGS 309

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
            ++D+  +   L  A+T+ +    ++  S   +++G   T R    AE   K  ++++
Sbjct: 310 ALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGR----AEEAVKIFLDMQ 363


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 211/336 (62%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L + + +HA  I   +  NV V ++L+D+Y KCGL+ ++  VF+ M  ++ V+ S++  G
Sbjct: 181 LSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAG 240

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q   +E  + +FR+  E     D F    V+ ACAGLAA+  GK+++    +   C +
Sbjct: 241 YVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSN 300

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+L+D+YAKCG ++ ++++F  +  RN++ WN+MISG +++ R  E + +F+ M +
Sbjct: 301 IFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQ 360

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+ V+F+ VLSAC HMGL+ +G+K+F  MTKE+ + P + HY+CMVD L RAG + 
Sbjct: 361 MGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIF 420

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI        +S+W  LL +C T  N  +AE  AKK+ +++P    +Y+LL N+Y 
Sbjct: 421 EAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYA 480

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G+W++  K+R L+K S VKK  GKSWIE   K++
Sbjct: 481 ANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVH 516



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 144/263 (54%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QGK  HA+++ +GL  +++  + L++MY KCG VD + +VFD+M  ++ VS + ++  
Sbjct: 80  LLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGS 139

Query: 62  YCQTGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G+     + ++++ RE      F+   VL ACA   AL   + +H   I+ +   +
Sbjct: 140 LTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLN 199

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+D+YAKCG +  A  +F  MP R+++TW+SM +G+ QN   E+AL +F    E
Sbjct: 200 VFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWE 259

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K D      V+ AC+ +  +  G++  A ++K       I   + ++D+  + G +E
Sbjct: 260 TGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKS-GFCSNIFVASSLIDMYAKCGGIE 318

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           E+  +  + + R +  LW  ++ 
Sbjct: 319 ESYKVFRDVEKR-NVVLWNAMIS 340



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ CA    L  GK  H Q +      D++  + L+++Y+KCG VDFA Q+F +MP R+
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           L++WN+MI    QNG   EAL +   M   GT     +   VL AC+    +        
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSE-----C 184

Query: 209 SMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIEN 245
            +   + IK  ++        ++D+  + GL+++A  + E+
Sbjct: 185 QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFES 225


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 133/312 (42%), Positives = 195/312 (62%), Gaps = 4/312 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +V V ++LVDMY KCG  + + +VF +M  KN VS ++++ G  Q G F+  + +FR+M+
Sbjct: 239 DVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQ 298

Query: 80  EI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
            +    D  +   VL +CA L  L LGK VH    R     D  I +ALVD+YAKCG +D
Sbjct: 299 RLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSID 358

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A  +F  M  +++ ++ +MI G A +G+G +AL +F +M + G +PD V+F+GVL+ACS
Sbjct: 359 QACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACS 418

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H+GL++ GRK+F  M+  Y ++P++EHY CMVDLLGRAGL+ EAE  I N     D+ + 
Sbjct: 419 HVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVL 478

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGAC       + E V KKI +++P    +YVL+ N+Y +  RW DA K+R  MK  
Sbjct: 479 GALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKER 538

Query: 316 GVKKMPGKSWIE 327
            ++K PG S IE
Sbjct: 539 NLEKTPGCSSIE 550



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 133/239 (55%), Gaps = 35/239 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+EVH + I +GL  +V V ++L+ MY  C ++  + +VFD   +++ VS + ++QG
Sbjct: 156 VREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQG 215

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVII 120
           Y + G                        R   GL             IR S    DV +
Sbjct: 216 YVKMG----------------------FAREGVGL-----------YIIRNSNVNLDVFV 242

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVD+Y KCG  +FA ++F +MPV+N+++WNSMISG AQ G+ +E+L +F  M   G 
Sbjct: 243 GNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGV 302

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           KPD V+ + VL++C+++G+++ G+   A + +  +I+      N +VD+  + G +++A
Sbjct: 303 KPDDVTLVAVLNSCANLGVLELGKWVHAYLDRN-QIRADGFIGNALVDMYAKCGSIDQA 360



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 53/91 (58%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D ++   VL+ACA   A+R G+EVH Q I+     DV + + L+ +YA C  +  A ++F
Sbjct: 139 DNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVF 198

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
              P R+L++W +MI G+ + G   E + ++
Sbjct: 199 DTSPQRDLVSWTTMIQGYVKMGFAREGVGLY 229



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 21/158 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VHA +    +  +  + ++LVDMY KCG +D++  VF  M +K+  S +A++ G
Sbjct: 322 LELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVG 381

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGK----EVHCQYIRRS 113
               G     + +F EM     E D  +F  VL AC+ +  +  G+    ++   Y  R 
Sbjct: 382 LAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRP 441

Query: 114 -----GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
                GC        +VDL  + G ++ A +    MP+
Sbjct: 442 QLEHYGC--------MVDLLGRAGLINEAEEFIRNMPI 471



 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCGCVD--FAHQ 139
            SF   L+ C  +  L   K++H   I+     D  + I + L  L A+   +D  +A  
Sbjct: 38  LSFLSTLQTCKSIKGL---KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALS 94

Query: 140 IFLQMPVRNLITWNSMISGFA-QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           +  Q+   NL  +N++I G A  N    E L ++  M   G  PD+ +   VL AC+   
Sbjct: 95  LLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESR 154

Query: 199 LIDRGRK 205
            +  G +
Sbjct: 155 AVREGEE 161


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 143/381 (37%), Positives = 214/381 (56%), Gaps = 54/381 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD---------------- 45
           L+ G+E+H  V+  GL  NV   ++L++MY  CGL+D +  +FD                
Sbjct: 130 LQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISG 189

Query: 46  --------------------------------KMLKKNSVSSSALLQGYCQTGDFESVIR 73
                                           KM +++ VS +A++ GY +   ++  + 
Sbjct: 190 YNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALM 249

Query: 74  IFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLY 128
           +FREM+    + D F+   VL ACA L AL LG+ +   YI ++  K D  + +AL+D+Y
Sbjct: 250 LFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIR-TYIDKNKVKNDTFVGNALIDMY 308

Query: 129 AKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI 188
            KCG V+ A  IF  +P R+  TW +M+ G A NG GEEAL +F  M +    PD V+++
Sbjct: 309 FKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYV 368

Query: 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADC 248
           GVLSAC+H G++D G+K FASMT  + I+P I HY CMVDLLG+AG L+EA  +I+N   
Sbjct: 369 GVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPM 428

Query: 249 RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKI 308
           + +S +W  LLGAC   ++A +AER  ++I+EL+P+    YVL  N+Y A  +W+   ++
Sbjct: 429 KPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLREL 488

Query: 309 RTLMKYSGVKKMPGKSWIEAN 329
           R +M   G+KK PG S IE N
Sbjct: 489 RQVMMDRGIKKTPGCSLIEMN 509



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 138/308 (44%), Gaps = 56/308 (18%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDM--YGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           K++H++ I  G+  N ++++ ++      + G +  + ++FD + + +  S + + +GY 
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYS 90

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           +    +  + ++ EM E     D +++  + +      AL+LG+E+HC  ++     +V 
Sbjct: 91  RIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVF 150

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS-----------------GFAQN 162
             +AL+++Y+ CG +D A  IF      +++TWN+MIS                 GF   
Sbjct: 151 AHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNT 210

Query: 163 GRGE-------------------------------EALRIFDDMTEGGTKPDHVSFIGVL 191
           G+ +                               EAL +F +M     KPD  + + VL
Sbjct: 211 GQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVL 270

Query: 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           +AC+ +G ++ G +   +   + ++K      N ++D+  + G +E A ++  N   + D
Sbjct: 271 TACAQLGALELG-EWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIF-NTLPQRD 328

Query: 252 SSLWEVLL 259
              W  ++
Sbjct: 329 KFTWTAMV 336


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 202/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VH K I  GL  +  V S++VDMY KCG++ E+ ++ D++  +  VS ++++ G
Sbjct: 455 LEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISG 514

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +      E   + F EM +I    D F++  VL  CA LA + LGK++H Q I++    D
Sbjct: 515 FSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGD 574

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I S LVD+YAKCG +  +  +F +    + ++WN+MI G+A +G+G EAL +F+ M +
Sbjct: 575 EYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQ 634

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+H +F+ VL ACSH+GL+D G ++F  MT  Y+++P++EH+ CMVD+LGR+   +
Sbjct: 635 ANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQ 694

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I +     D+ +W+ LL  C   ++  VAE  A  ++ L PD    Y+LL NVY 
Sbjct: 695 EALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYILLSNVYA 754

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W D  + R LM+   +KK PG SWIE  S+++
Sbjct: 755 ESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMH 790



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 147/260 (56%), Gaps = 6/260 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QG +VH   I  G   +V V ++++D+YGKC  + E++ VF +M +++SVS +A++    
Sbjct: 356 QGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALE 415

Query: 64  QTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q   +E  I    EM     E D F++G VL+ACAGL +L  G  VH + I+     D  
Sbjct: 416 QNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAF 475

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + S +VD+Y KCG +  A ++  ++  + L++WNS+ISGF+ N + EEA + F +M + G
Sbjct: 476 VSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIG 535

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPDH ++  VL  C+++  I+ G++    + K+  +  +    + +VD+  + G + ++
Sbjct: 536 VKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYIS-STLVDMYAKCGNMPDS 594

Query: 240 ETLIENADCRHDSSLWEVLL 259
             + E A  + D   W  ++
Sbjct: 595 LLMFEKAQ-KLDFVSWNAMI 613



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 137/265 (51%), Gaps = 8/265 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++HA  +  GL  +V   S+LVDMYGKC  ++++ R F  M ++NSVS  A + G
Sbjct: 152 LALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAG 211

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q   +   + +F +M+ + L     ++  V R+CA +  L   +++H   I+     D
Sbjct: 212 CVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSAD 271

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ +A+VD+YAK   +  A + F  +P   +   N+M+ G  + G G EAL++F  MT 
Sbjct: 272 RVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTR 331

Query: 178 GGTKPDHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G   D VS  GV SAC+ + G +   + H  ++   + +   +   N ++DL G+   L
Sbjct: 332 SGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVR--NAILDLYGKCKAL 389

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
            EA  + +  + R DS  W  ++ A
Sbjct: 390 VEAYLVFQEMEQR-DSVSWNAIIAA 413



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 147/295 (49%), Gaps = 11/295 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   +++HA  I      + VV +++VD+Y K   + ++ R F  +      + +A++ G
Sbjct: 253 LSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVG 312

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             +TG     +++F+ M       D+ S   V  ACA +     G +VHC  I+     D
Sbjct: 313 LVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVD 372

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +A++DLY KC  +  A+ +F +M  R+ ++WN++I+   QN   E+ +   ++M  
Sbjct: 373 VCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLR 432

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G +PD  ++  VL AC+ +  ++ G   H  ++     +   +   + +VD+  + G++
Sbjct: 433 YGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVS--STVVDMYCKCGMI 490

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPDCHLSY 289
            EA+ L +    +   S W  ++   +  + +  A++   +++++  KPD H +Y
Sbjct: 491 TEAQKLHDRIGGQELVS-WNSIISGFSLNKQSEEAQKFFSEMLDIGVKPD-HFTY 543



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 106/246 (43%), Gaps = 35/246 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSS----- 56
           L  G+  HA+++  G      V + L+ MY +CG    +  VFD M  +++VS +     
Sbjct: 20  LATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTA 79

Query: 57  --------------------------ALLQGYCQTGDFESVIRIFREMEE----IDLFSF 86
                                     ALL GYCQ G F   + +  EM       D  + 
Sbjct: 80  YAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTL 139

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            ++L+AC GL  L LG ++H   ++     DV   SALVD+Y KC  ++ A + F  M  
Sbjct: 140 AVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGE 199

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN ++W + I+G  QN +    L +F  M   G      ++  V  +C+ +  +   R+ 
Sbjct: 200 RNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQL 259

Query: 207 FASMTK 212
            A   K
Sbjct: 260 HAHAIK 265



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           FS    L A AG +AL  G+  H + +         + + L+ +YA+CG    A  +F  
Sbjct: 5   FSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDV 64

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           MP R+ ++WN+M++ +A  G    A  +F  M +    PD VS+  +LS     G+ 
Sbjct: 65  MPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPD----PDVVSWNALLSGYCQRGMF 117


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 129/343 (37%), Positives = 206/343 (60%), Gaps = 13/343 (3%)

Query: 3    KQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDK--------MLKKNSV 53
            K G    A+++ L +   N+V  ++L+  Y   G  DE+  +F +        M++ N V
Sbjct: 1156 KHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVV 1215

Query: 54   SSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQY 109
            S SA++ G+   G  E  + +FR M+    + +  +   VL  CA LAAL LG+E+H   
Sbjct: 1216 SWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHV 1275

Query: 110  IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
            +R     ++++ + L+++Y K G     + +F ++  ++LI+WN+M++G+  +G GE A+
Sbjct: 1276 VRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAI 1335

Query: 170  RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            R FD M + G +PD V+F+ VLSACSH GL+  GR+ F  M KE+R++P++EHY CMVDL
Sbjct: 1336 RTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDL 1395

Query: 230  LGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY 289
            LGRAGLL+EA  ++++     ++ +W  LL +C   +N  VAE  A +I  L  +   SY
Sbjct: 1396 LGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSY 1455

Query: 290  VLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            +LL N+Y A GRW D+ K+R   K  G+KK PG+SWI+   K+
Sbjct: 1456 MLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKV 1498



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 140/324 (43%), Gaps = 84/324 (25%)

Query: 6    KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
            + VH  V+ +G   N+ V + L+ MYGK G +D++ +VF++M  ++ VS + ++ GY   
Sbjct: 993  RSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALN 1052

Query: 66   GDFESVIRIFREM--------------------------EEIDLF-------------SF 86
             D      +FR M                          E ++LF             + 
Sbjct: 1053 YDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEAL 1112

Query: 87   GIVLRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMP 145
             +VL     LAA   GK +H  Y+ + G ++ + ++++L+ LY K G V+ A  +FL++ 
Sbjct: 1113 AVVLSVSVDLAAFDEGKVIHG-YVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIK 1171

Query: 146  VRNLITWNSMIS---------------------------------------GFAQNGRGE 166
             +N+++WN++IS                                       GFA  G+GE
Sbjct: 1172 TKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGE 1231

Query: 167  EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
            EAL +F  M     K + V+   VLS C+ +  +  GR+    + +   +   I   N +
Sbjct: 1232 EALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSL-MDGNILVGNGL 1290

Query: 227  VDLLGRAGLLEEAETL---IENAD 247
            +++  ++G  +E   +   IEN D
Sbjct: 1291 INMYTKSGSFKEGNLVFEKIENKD 1314



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 111/205 (54%), Gaps = 17/205 (8%)

Query: 6    KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD--------KMLKKNSVSSSA 57
            +++H+++I  G   +  + + +V +Y   GLV ++ RVF+         +L  NS+  + 
Sbjct: 889  QQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRAN 948

Query: 58   LLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
            +  GYC     E  + I+  M ++    D F+F +V+RACA + + +L + VH   +   
Sbjct: 949  VAHGYC-----EEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMG 1003

Query: 114  GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
               ++ + + L+ +Y K G +D A ++F +M VR+ ++WN+M+SG+A N     A  +F 
Sbjct: 1004 FQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFR 1063

Query: 174  DMTEGGTKPDHVSFIGVLSACSHMG 198
             M   G +P+ V++  +LS+ +  G
Sbjct: 1064 MMGSAGLEPNLVTWTSLLSSHARCG 1088



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 6/162 (3%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L  G+E+H  V+   + GN++V + L++MY K G   E + VF+K+  K+ +S + ++ G
Sbjct: 1265 LHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAG 1324

Query: 62   YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            Y   G  E+ IR F +M     E D  +F  VL AC+    +  G+E+  + I+    + 
Sbjct: 1325 YGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEP 1384

Query: 118  VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMIS 157
             +   A +VDL  + G +  A ++   MPV  N   W ++++
Sbjct: 1385 QMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLN 1426



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 10/155 (6%)

Query: 101  LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR---NLITWNSMIS 157
            L +++H Q I     +   + + +V +YA  G V  A ++F   P+    NL+ WNS++ 
Sbjct: 887  LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILR 946

Query: 158  GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG---LIDRGRKHFASMTKEY 214
                +G  EEAL I+  M + G   D  +F  V+ AC+ MG   L      H   M  ++
Sbjct: 947  ANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 1006

Query: 215  RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
             +       N ++ + G+ G +++A  + E    R
Sbjct: 1007 NLHVG----NELMGMYGKIGRMDDARKVFERMAVR 1037


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 131/337 (38%), Positives = 207/337 (61%), Gaps = 6/337 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RL   K++H+ ++ +GL  +V V S+L+D+Y K G + E+ +VF +M+  +SV  ++++ 
Sbjct: 398 RLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIA 457

Query: 61  GYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            + Q  D +  + +++ M  +    D  +   VLRAC  L+ L LG++ H   ++    +
Sbjct: 458 AFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFD--Q 515

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+I+ +AL+D+Y KCG ++ A  IF +M  +++I+W++MI+G AQNG   EAL +F+ M 
Sbjct: 516 DLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMK 575

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+H++ +GVL ACSH GL++ G  +F SM   Y I P  EHY CM+DLLGRA  L
Sbjct: 576 VQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKL 635

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           ++   LI   +C  D   W  LL AC   +N  +A   AK+I++L P    +YVLL N+Y
Sbjct: 636 DDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIY 695

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
               RWND  ++R  MK  G++K PG SWIE N +++
Sbjct: 696 AISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIH 732



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 139/264 (52%), Gaps = 11/264 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++GK VH  + + G      + + L++MY K  L++E+  +FDKM ++N VS + ++  
Sbjct: 301 VREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISA 360

Query: 62  YCQTGDFESVIRI----FREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y      +  +R+    FR+    ++F+F  VLRAC  L  L   K++H   ++     D
Sbjct: 361 YSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLESD 417

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+Y+K G +  A ++F +M   + + WNS+I+ FAQ+  G+EAL ++  M  
Sbjct: 418 VFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRR 477

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G   D  +   VL AC+ + L++ GR+    + K       +   N ++D+  + G LE
Sbjct: 478 VGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK---FDQDLILNNALLDMYCKCGSLE 534

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           +A+  I N   + D   W  ++  
Sbjct: 535 DAK-FIFNRMAKKDVISWSTMIAG 557



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 9/207 (4%)

Query: 59  LQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           L  +C   D  S + +   ME      D  ++  +++ C    A+R GK VH        
Sbjct: 257 LLNHCYRRDLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGY 316

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
                + + L+++Y K   ++ A  +F +MP RN+++W +MIS ++     + A+R+   
Sbjct: 317 HPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAF 376

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G  P+  +F  VL AC  +  +    K   S   +  ++  +   + ++D+  + G
Sbjct: 377 MFRDGVMPNMFTFSSVLRACERLYDL----KQLHSWIMKVGLESDVFVRSALIDVYSKMG 432

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
            L EA  +        DS +W  ++ A
Sbjct: 433 ELLEALKVFREM-MTGDSVVWNSIIAA 458


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 133/337 (39%), Positives = 199/337 (59%), Gaps = 5/337 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RL +GK VH   I   +  +V + SSL+D+Y KCG V+ +  +F  + K   VS + ++ 
Sbjct: 323 RLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMIS 382

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY   G     + +F EM     E D  +F  VL AC+ LAAL  G+E+H   I +    
Sbjct: 383 GYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDN 442

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + ++  AL+D+YAKCG VD A  +F  +P R+L++W SMI+ +  +G+   AL +F +M 
Sbjct: 443 NEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEML 502

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +   KPD V+F+ +LSAC H GL+D G  +F  M   Y I P++EHY+C++DLLGRAG L
Sbjct: 503 QSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRL 562

Query: 237 EEA-ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            EA E L +N + R D  L   L  AC   RN  +   +A+ +++  PD   +Y+LL N+
Sbjct: 563 HEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNM 622

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           Y +  +W++   +R+ MK  G+KK PG SWIE N K+
Sbjct: 623 YASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKI 659



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 161/289 (55%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G E+H ++I  G   +  + S+LVDMYGKCG ++ +  VF++M KK  V+ ++++ G
Sbjct: 223 LNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISG 282

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   GD  S I++F+ M     +  L +   ++  C+  A L  GK VH   IR     D
Sbjct: 283 YGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSD 342

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I S+L+DLY KCG V+ A  IF  +P   +++WN MISG+   G+  EAL +F +M +
Sbjct: 343 VFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRK 402

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +PD ++F  VL+ACS +  +++G +   ++  E ++         ++D+  + G ++
Sbjct: 403 SYVEPDAITFTSVLTACSQLAALEKGEE-IHNLIIEKKLDNNEVVMGALLDMYAKCGAVD 461

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           EA ++ +    R D   W  ++ A  +   A+VA  +  ++++  +KPD
Sbjct: 462 EAFSVFKCLPKR-DLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPD 509



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 138/251 (54%), Gaps = 9/251 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SALLQ 60
           LKQGK +H KV+TLGL  ++ +  +L+++Y  C L D +  VFD M     +S  + L+ 
Sbjct: 19  LKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMA 78

Query: 61  GYCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           GY +   +   + +F ++      + D +++  VL+AC GL    LGK +H   ++    
Sbjct: 79  GYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLM 138

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D+++ S+LV +YAKC   + A  +F +MP +++  WN++IS + Q+G  +EAL  F  M
Sbjct: 139 MDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLM 198

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G +P+ V+    +S+C+ +  ++RG + H   +   + +   I   + +VD+ G+ G
Sbjct: 199 RRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFIS--SALVDMYGKCG 256

Query: 235 LLEEAETLIEN 245
            LE A  + E 
Sbjct: 257 HLEMAIEVFEQ 267



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 5/244 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H  ++  GL  ++VV SSLV MY KC   +++  +F++M +K+    + ++  Y Q
Sbjct: 125 GKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQ 184

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +G+F+  +  F  M     E +  +    + +CA L  L  G E+H + I      D  I
Sbjct: 185 SGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFI 244

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVD+Y KCG ++ A ++F QMP + ++ WNSMISG+   G     +++F  M   G 
Sbjct: 245 SSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGV 304

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP   +   ++  CS    +  G K     T   RI+  +   + ++DL  + G +E AE
Sbjct: 305 KPTLTTLSSLIMVCSRSARLLEG-KFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAE 363

Query: 241 TLIE 244
            + +
Sbjct: 364 NIFK 367



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 2/108 (1%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +LRAC    +L+ GK +H + +      D+ +   L++LY  C   D A  +F  M    
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPC 68

Query: 149 LIT-WNSMISGFAQNGRGEEALRIFDDMTE-GGTKPDHVSFIGVLSAC 194
            I+ WN +++G+ +N    EAL +F+ +      KPD  ++  VL AC
Sbjct: 69  EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKAC 116


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 207/337 (61%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GKE+HA ++  G   +V V ++L+DMY + G V  +  VFD+M  KN VS SA++  
Sbjct: 190 LQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIAC 249

Query: 62  YCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           Y + G     + +FREM         +  +   VL+ACA  AAL  GK +H   +RR   
Sbjct: 250 YAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLD 309

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             + + SAL+ +YA+CG ++    IF +M  ++++ WNS+IS +  +G G +A++IF++M
Sbjct: 310 SILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEM 369

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G  P H+SFI VL ACSH GL++ G+K F SM KE+ I+P +EHY CMVDLLGRA  
Sbjct: 370 IDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANR 429

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L+EA  +IE+        +W  LLGAC    +  +AER +K++ +L+P    +YVLL ++
Sbjct: 430 LDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADI 489

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           Y     W++  +++ L+    ++K+PG+SWIE   K+
Sbjct: 490 YAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKI 526



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 154/306 (50%), Gaps = 25/306 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L    +VH  ++  G   +  + + L++M+ +   VD + +VFDK  K+     +AL + 
Sbjct: 85  LSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRA 144

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAG----LAALRLGKEVHCQYIRRS 113
               G    V+ ++  M  +    D F++  +L+AC      ++ L+ GKE+H   +R  
Sbjct: 145 LALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHG 204

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
               V + + L+D+YA+ GCV +A  +F +MPV+N+++W++MI+ +A+NG+  EAL +F 
Sbjct: 205 YGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFR 264

Query: 174 DM--TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE--YRIKPKIEHYNCMVDL 229
           +M      + P+ V+ + VL AC+    +++G+   A + +     I P I   + ++ +
Sbjct: 265 EMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVI---SALITM 321

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD----- 284
             R G LE  + + +    + D  LW  L+ +       H   R A KI E   D     
Sbjct: 322 YARCGKLESGQLIFDRMH-KKDVVLWNSLISS----YGLHGYGRKAIKIFEEMIDHGFSP 376

Query: 285 CHLSYV 290
            H+S++
Sbjct: 377 SHISFI 382



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 44  FDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGK 103
           F+     NS +++ L+Q  C+ G+ +  + +          +  +++ + A   +L    
Sbjct: 31  FNPSTPPNS-NNNHLIQSLCKQGNLKQALYLLSHESNPTQQTCELLILSAARRNSLSDAL 89

Query: 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           +VH   +     +D  + + L++++++   VD A ++F +   R +  WN++    A  G
Sbjct: 90  DVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAG 149

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           RG + L ++  M   G   D  ++  +L AC
Sbjct: 150 RGNDVLELYPRMNMMGVSSDRFTYTYLLKAC 180


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 208/367 (56%), Gaps = 35/367 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G + H ++I  G   +V V++SLV MY   G +  +  VF ++   + VS ++++ G
Sbjct: 129 LDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAG 188

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI--------------------------------- 88
           Y ++GD  S  ++F +M E +L ++ +                                 
Sbjct: 189 YIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVM 248

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             V+ +CA L AL LG+  H   +R     ++I+ +ALVD+YA+CG +D A  +F Q+P 
Sbjct: 249 VSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPG 308

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R+ ++W ++I+GFA +G  E+AL  F  M + G  P  ++F  VLSACSH GL++RG + 
Sbjct: 309 RDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLEL 368

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SM ++YRI+P++EHY CMVDLLGRAG L EAE  +     + ++ +W  LLGAC   +
Sbjct: 369 FESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHK 428

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N+ +AER  K ++ELKP+    YVLL N+Y    +W +   IR +MK  GV K PG +  
Sbjct: 429 NSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLF 488

Query: 327 EANSKLN 333
           E + K++
Sbjct: 489 EMDGKVH 495



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/295 (19%), Positives = 130/295 (44%), Gaps = 37/295 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K +HA +I      +V   S L+ +     L+D + +VF ++   N    ++ ++G
Sbjct: 28  LSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRG 87

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +  + D +     + + +      D  ++  +++AC    +L +G + H Q IR     D
Sbjct: 88  FSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSD 147

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V ++++LV +Y+  G +  A  +F ++   ++++W SM++G+ ++G    A ++FD M E
Sbjct: 148 VYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPE 207

Query: 178 G-------------------------------GTKPDHVSFIGVLSACSHMGLIDRGRKH 206
                                           G   +    + V+++C+H+G ++ G + 
Sbjct: 208 KNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERA 267

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
              + +  ++   +     +VD+  R G +++A  + +    R D+  W  L+  
Sbjct: 268 HDYILRN-KMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGR-DALSWTTLIAG 320



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 104/229 (45%), Gaps = 10/229 (4%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L +C  L+ L++   +H   IR     DV   S L+ +      +D+A Q+F Q+   NL
Sbjct: 22  LESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNL 78

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
             +NS I GF+ +   +++   +      G  PD++++  ++ AC+  G +D G +    
Sbjct: 79  FIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQ 138

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           + + +     +   N +V +    G ++ A  +     C  D   W  ++      ++  
Sbjct: 139 IIR-HGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCL-DVVSWTSMVAG--YIKSGD 194

Query: 270 VAERVAKKIMELKPDCHL-SYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
           V    A+K+ +  P+ +L ++ ++ + Y     ++ A ++  L++  GV
Sbjct: 195 VTS--ARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGV 241


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 147/368 (39%), Positives = 212/368 (57%), Gaps = 37/368 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDES--------------------- 40
           L  GK VH  V  L +    V+E++L+DMY  CG +D +                     
Sbjct: 236 LNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTG 295

Query: 41  ----------HRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSF 86
                        FDKM +++ VS +A++ GY Q   F+ V+ +FREM+    + D F+ 
Sbjct: 296 FTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTM 355

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             +L ACA L AL LG+ +   YI ++  K D  + +AL+D+Y  CG V+ A +IF  MP
Sbjct: 356 VSILTACAHLGALELGEWIKA-YIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMP 414

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R+ I+W ++I G A NG GEEAL +F  M +    PD V+ IGVL AC+H G++D+G+K
Sbjct: 415 HRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKK 474

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            FA MT ++ I+P + HY CMVDLLGRAG L+EA  +I+N   + +S +W  LLGAC   
Sbjct: 475 FFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVH 534

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           R+  +AE  A++I+EL+P+    YVLL N+Y A  RW    ++R LM   G+KK PG S 
Sbjct: 535 RDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSL 594

Query: 326 IEANSKLN 333
           IE N  ++
Sbjct: 595 IEMNGSVH 602



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 150/296 (50%), Gaps = 43/296 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G+E+H  ++ LG   NV V+++L+ +Y   G V  +  VFD+  K + V+ + ++ G
Sbjct: 135 VKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISG 194

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y ++  F+  +++F EME + +    I    VL AC+ L  L +GK VH +Y++    + 
Sbjct: 195 YNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVH-RYVKDLKIEP 253

Query: 118 V-IIESALVDLYAKCGCVD-------------------------------FAHQIFLQMP 145
           V ++E+AL+D+YA CG +D                                A   F +MP
Sbjct: 254 VRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMP 313

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R+ ++W +MI G+ Q  R +E L +F +M     KPD  + + +L+AC+H+G ++ G  
Sbjct: 314 ERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEW 373

Query: 206 HFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             A + K    + KI+ +  N ++D+    G +E+A   I NA    D   W  ++
Sbjct: 374 IKAYIDKN---EIKIDSFVGNALIDMYFNCGNVEKA-IRIFNAMPHRDKISWTAVI 425



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 161/324 (49%), Gaps = 11/324 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGK--CGLVDESHRVFDKMLKKNSVSSSALL 59
           + Q K++H++ I  GL  N +V + ++    K   G ++ +  VFD M   N    + ++
Sbjct: 32  MAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMI 91

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           +GY + G   S + ++ EM E     D +++  +L+      A++ G+E+H   ++    
Sbjct: 92  KGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFS 151

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +V +++AL+ LY+  G V  A  +F +    +++TWN MISG+ ++ + +E++++FD+M
Sbjct: 152 SNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEM 211

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                 P  ++ + VLSACS +  ++ G++      K+ +I+P     N ++D+    G 
Sbjct: 212 ERMRVLPSSITLVSVLSACSKLKDLNVGKR-VHRYVKDLKIEPVRVLENALIDMYAACGD 270

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           ++ A  + +N   R D   W  ++   T      +A     K+ E      +S+  + + 
Sbjct: 271 MDTALGIFDNMKSR-DVISWTAIVTGFTNLGQVGLARNYFDKMPERD---FVSWTAMIDG 326

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKK 319
           Y  V R+ +   +   M+ + +K 
Sbjct: 327 YLQVNRFKEVLSLFREMQAANIKP 350


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 206/333 (61%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++V++  + LG+     V +SL+ MY + G ++++ + FD + +KN VS +A++ GY +
Sbjct: 373 GEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 432

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               E    +F E+ +    I  F+F  +L   A + A+  G+++H + ++     +  I
Sbjct: 433 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI 492

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+ +Y++CG ++ A Q+F +M  RN+I+W SMI+GFA++G    AL +F  M E GT
Sbjct: 493 CNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 552

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ ++++ VLSACSH+G+I  G+KHF SM KE+ I P++EHY CMVDLLGR+GLL EA 
Sbjct: 553 KPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAM 612

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I +     D+ +W  LLGAC    N  +    A+ I+E +PD   +Y+LL N++ + G
Sbjct: 613 EFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 672

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W D  KIR  MK   + K  G SWIE  ++++
Sbjct: 673 QWKDVVKIRKSMKERNLIKEAGCSWIEVENRVH 705



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 138/249 (55%), Gaps = 19/249 (7%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMYGK-CGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           G+ ++  V+  G L  +V V   L+DM+ K  G +  +++VFDKM ++N V+ + ++  +
Sbjct: 165 GEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRF 224

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G     I +F +ME      D F++  VL AC  L  L LGK++H + IR     DV
Sbjct: 225 AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDV 284

Query: 119 IIESALVDLYAKC---GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR-GEEALRIFDD 174
            +  +LVD+YAKC   G VD + ++F QMP  N+++W ++I+ + Q+G   +EA+ +F  
Sbjct: 285 CVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCK 344

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC----MVDLL 230
           M  G  +P+H SF  VL AC ++     G + ++     Y +K  I   NC    ++ + 
Sbjct: 345 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMY 399

Query: 231 GRAGLLEEA 239
            R+G +E+A
Sbjct: 400 ARSGRMEDA 408



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 166/310 (53%), Gaps = 15/310 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSAL 58
           L  GK++H++VI LGL  +V V  SLVDMY KC   G VD+S +VF++M + N +S +A+
Sbjct: 265 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 324

Query: 59  LQGYCQTGDFE-SVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +  Y Q+G+ +   I +F +M       + FSF  VL+AC  L+    G++V+   ++  
Sbjct: 325 ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 384

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
                 + ++L+ +YA+ G ++ A + F  +  +NL+++N+++ G+A+N + EEA  +F+
Sbjct: 385 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 444

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGR 232
           ++ + G      +F  +LS  + +G + +G + H   +   Y+    I   N ++ +  R
Sbjct: 445 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI--CNALISMYSR 502

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
            G +E A  +    + R+  S W  ++        A  A  +  K++E   KP+  ++YV
Sbjct: 503 CGNIEAAFQVFNEMEDRNVIS-WTSMITGFAKHGFATRALEMFHKMLETGTKPN-EITYV 560

Query: 291 LLDNVYRAVG 300
            + +    VG
Sbjct: 561 AVLSACSHVG 570



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 119/212 (56%), Gaps = 9/212 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQ 60
            + GK VH K++  GL  + VV ++L+ +Y KCG  + +  +F+ M  K++ VS SA++ 
Sbjct: 60  FQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVS 119

Query: 61  GYCQTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGC- 115
            +         I  F +M E+  +     F  V+RAC+      +G+ ++  ++ ++G  
Sbjct: 120 CFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIY-GFVVKTGYL 178

Query: 116 -KDVIIESALVDLYAK-CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
             DV +   L+D++ K  G +  A+++F +MP RNL+TW  MI+ FAQ G   +A+ +F 
Sbjct: 179 EADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFL 238

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           DM   G  PD  ++  VLSAC+ +GL+  G++
Sbjct: 239 DMELSGYVPDRFTYSSVLSACTELGLLALGKQ 270



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 68  FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127
           F ++  + ++    DL ++ I+L++C      +LGK VH + ++     D ++ + L+ L
Sbjct: 29  FSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISL 88

Query: 128 YAKCGCVDFAHQIFLQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           Y+KCG  + A  IF  M   R+L++W++M+S FA N    +A+  F DM E G  P+   
Sbjct: 89  YSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYC 148

Query: 187 FIGVLSACSH 196
           F  V+ ACS+
Sbjct: 149 FAAVIRACSN 158


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 136/317 (42%), Positives = 198/317 (62%), Gaps = 7/317 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV+  +S++  Y  CG + E+  +FDK   ++ V  +A++ GY Q   F+  + +FREM+
Sbjct: 363 NVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQ 422

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               + D F+   +L  CA L AL  GK +H          DV++ +AL+++Y+KCGCVD
Sbjct: 423 IQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVD 482

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            + +IF ++  ++  +W S+I G A NG+  EALR+F +M   G KPD ++FIGVLSACS
Sbjct: 483 KSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACS 542

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN---ADCRHDS 252
           H GL++ GR+ F SM K +RI+PK+EHY C++DLLGRAGLL+EAE LI+     +C    
Sbjct: 543 HGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVV 602

Query: 253 SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312
            L+  LL AC    N  + ER+AKK+  ++      + LL N+Y +V RW DA K+R  M
Sbjct: 603 PLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKM 662

Query: 313 KYSGVKKMPGKSWIEAN 329
           K  GVKKMPG S IE +
Sbjct: 663 KELGVKKMPGCSLIEVD 679



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 43/308 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QG++V   ++  G+  +  V +SL+DMY +   V+ + ++FD+M  ++SVS + ++ G
Sbjct: 213 VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 272

Query: 62  YCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y +   FE  I  FREM     E+ D  +    L AC  L  L LG E+H  Y+R+    
Sbjct: 273 YVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIH-NYVRKELGF 331

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD--- 173
              I++AL+D+YAKCGC++ A  IF +M ++N+I W SMISG+   G   EA  +FD   
Sbjct: 332 TTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSP 391

Query: 174 ----------------------------DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
                                       +M     KPD  + + +L+ C+ +G +++G K
Sbjct: 392 VRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQG-K 450

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA-ETLIENADCRHDSSLWEVLLGACTT 264
                  E RI   +     ++++  + G ++++ E   E  D   D++ W  ++  C  
Sbjct: 451 WIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELED--KDTASWTSII--CGL 506

Query: 265 FRNAHVAE 272
             N   +E
Sbjct: 507 AMNGKTSE 514



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 129/250 (51%), Gaps = 9/250 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL--VDESHRVFDKMLKKNSVSSSALL 59
           + Q K++ +++  +GL G+    + L+       L  +  + ++F+ +   +    + ++
Sbjct: 110 MDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMV 169

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           + Y + G    V+ +F+++ E     D F++  VL+A   L  +R G++V    ++    
Sbjct: 170 KIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD 229

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D  + ++L+D+Y +   V+ A ++F +M  R+ ++WN MISG+ +  R E+A+  F +M
Sbjct: 230 LDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREM 289

Query: 176 -TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
             EG  KPD  + +  LSAC+ +  ++ G +    + KE     +I+  N ++D+  + G
Sbjct: 290 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRID--NALLDMYAKCG 347

Query: 235 LLEEAETLIE 244
            L  A  + +
Sbjct: 348 CLNIARNIFD 357



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 21/160 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK +H  +    +  +VVV ++L++MY KCG VD+S  +F ++  K++ S ++++ G
Sbjct: 446 LEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICG 505

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLG-------KEVHC--Q 108
               G     +R+F EME +    D  +F  VL AC+    +  G       K+VH    
Sbjct: 506 LAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEP 565

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
            +   GC        ++DL  + G +D A ++  ++P+ N
Sbjct: 566 KVEHYGC--------VIDLLGRAGLLDEAEELIQEIPIEN 597


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 206/333 (61%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++V++  + LG+     V +SL+ MY + G ++++ + FD + +KN VS +A++ GY +
Sbjct: 175 GEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 234

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               E    +F E+ +    I  F+F  +L   A + A+  G+++H + ++     +  I
Sbjct: 235 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI 294

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+ +Y++CG ++ A Q+F +M  RN+I+W SMI+GFA++G    AL +F  M E GT
Sbjct: 295 CNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 354

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ ++++ VLSACSH+G+I  G+KHF SM KE+ I P++EHY CMVDLLGR+GLL EA 
Sbjct: 355 KPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAM 414

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I +     D+ +W  LLGAC    N  +    A+ I+E +PD   +Y+LL N++ + G
Sbjct: 415 EFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 474

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W D  KIR  MK   + K  G SWIE  ++++
Sbjct: 475 QWKDVVKIRKSMKERNLIKEAGCSWIEVENRVH 507



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 120/212 (56%), Gaps = 17/212 (8%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAG 95
           +++VFDKM ++N V+ + ++  + Q G     I +F +ME      D F++  VL AC  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC---GCVDFAHQIFLQMPVRNLITW 152
           L  L LGK++H + IR     DV +  +LVD+YAKC   G VD + ++F QMP  N+++W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 153 NSMISGFAQNGR-GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
            ++I+ +AQ+G   +EA+ +F  M  G  +P+H SF  VL AC ++     G + ++   
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS--- 180

Query: 212 KEYRIKPKIEHYNC----MVDLLGRAGLLEEA 239
             Y +K  I   NC    ++ +  R+G +E+A
Sbjct: 181 --YAVKLGIASVNCVGNSLISMYARSGRMEDA 210



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 174/328 (53%), Gaps = 16/328 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSAL 58
           L  GK++H++VI LGL  +V V  SLVDMY KC   G VD+S +VF++M + N +S +A+
Sbjct: 67  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 126

Query: 59  LQGYCQTGDFE-SVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +  Y Q+G+ +   I +F +M       + FSF  VL+AC  L+    G++V+   ++  
Sbjct: 127 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 186

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
                 + ++L+ +YA+ G ++ A + F  +  +NL+++N+++ G+A+N + EEA  +F+
Sbjct: 187 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 246

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGR 232
           ++ + G      +F  +LS  + +G + +G + H   +   Y+    I   N ++ +  R
Sbjct: 247 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI--CNALISMYSR 304

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
            G +E A  +    + R+  S W  ++        A  A  +  K++E   KP+  ++YV
Sbjct: 305 CGNIEAAFQVFNEMEDRNVIS-WTSMITGFAKHGFATRALEMFHKMLETGTKPN-EITYV 362

Query: 291 LLDNVYRAVGRWNDAFK-IRTLMKYSGV 317
            + +    VG  ++  K   ++ K  G+
Sbjct: 363 AVLSACSHVGMISEGQKHFNSMYKEHGI 390


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            LKQGK++ A V+  G   ++ V S ++DMY KCG ++ + R+F+++   + V+ + ++ G
Sbjct: 1125 LKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISG 1184

Query: 62   YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
              + G  E  +  +  M     + D ++F  +++AC+ L AL  G+++H   ++ +   D
Sbjct: 1185 CVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFD 1244

Query: 118  VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
              + ++LVD+YAKCG ++ A  +F +     + +WN+MI G AQ+G  EEAL+ F++M  
Sbjct: 1245 PFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKS 1304

Query: 178  GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             G  PD V+FIGVLSACSH GL+    ++F SM K Y I+P+IEHY+C+VD L RAG + 
Sbjct: 1305 RGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIR 1364

Query: 238  EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
            EAE +I +      +S++  LL AC    +    +RVA+K++ L+P    +YVLL NVY 
Sbjct: 1365 EAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYA 1424

Query: 298  AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A  +W +    R +M+ + VKK PG SW++  +K++
Sbjct: 1425 AANQWENVASARNMMRKANVKKDPGFSWVDLKNKVH 1460



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 139/270 (51%), Gaps = 8/270 (2%)

Query: 7    EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
            ++HA  +  G+  +  V ++L+D+Y K G ++E+  +F      +  S +A++ GY  +G
Sbjct: 1029 QIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSG 1088

Query: 67   DFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
            DF   +R++  M+E     +  +     +A  GL  L+ GK++    ++R    D+ + S
Sbjct: 1089 DFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVIS 1148

Query: 123  ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
             ++D+Y KCG ++ A +IF ++P  + + W +MISG  +NG+ E AL  +  M     +P
Sbjct: 1149 GVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQP 1208

Query: 183  DHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D  +F  ++ ACS +  +++GR+  A+  K      P +     +VD+  + G +E+A  
Sbjct: 1209 DEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFV--MTSLVDMYAKCGNIEDARG 1266

Query: 242  LIENADCRHDSSLWEVLLGACTTFRNAHVA 271
            L +  +    +S W  ++       NA  A
Sbjct: 1267 LFKRTNTSRIAS-WNAMIVGLAQHGNAEEA 1295



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 106/209 (50%), Gaps = 13/209 (6%)

Query: 59   LQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
            L  + Q G+    +  F +M       D  +F ++L   AGL  L LGK++H   +R   
Sbjct: 878  LSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGL 937

Query: 115  CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             + V + + L+++Y K G V  A  +F QM   +L++WN+MISG A +G  E ++ +F D
Sbjct: 938  DQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVD 997

Query: 175  MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI--EHY--NCMVDLL 230
            +  GG  PD  +   VL ACS +G    G  H A+      +K  +  + +    ++D+ 
Sbjct: 998  LLRGGLLPDQFTVASVLRACSSLG----GGCHLATQIHACAMKAGVVLDSFVSTTLIDVY 1053

Query: 231  GRAGLLEEAETLIENADCRHDSSLWEVLL 259
             ++G +EEAE L  N D   D + W  ++
Sbjct: 1054 SKSGKMEEAEFLFVNQDG-FDLASWNAMM 1081



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 129/266 (48%), Gaps = 7/266 (2%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L+ GK++H  V+  GL   V V + L++MY K G V  +  VF +M + + VS + ++ G
Sbjct: 922  LELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISG 981

Query: 62   YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAA-LRLGKEVHCQYIRRSGCK 116
               +G  E  + +F ++       D F+   VLRAC+ L     L  ++H   ++     
Sbjct: 982  CALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVL 1041

Query: 117  DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            D  + + L+D+Y+K G ++ A  +F+     +L +WN+M+ G+  +G   +ALR++  M 
Sbjct: 1042 DSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQ 1101

Query: 177  EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            E G + + ++      A   +  + +G++  A + K       +   + ++D+  + G +
Sbjct: 1102 ESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKR-GFNLDLFVISGVLDMYLKCGEM 1160

Query: 237  EEAETLIENADCRHDSSLWEVLLGAC 262
            E A  +  N     D   W  ++  C
Sbjct: 1161 ESARRIF-NEIPSPDDVAWTTMISGC 1185



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALL 59
           L  GK  HA+++T G   +  + ++L+ MY KCG +  + ++FD      ++ V+ +A+L
Sbjct: 642 LPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAIL 701

Query: 60  QGYCQTG-DFESVIRIFR-EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             +     D   + R+ R         +   V + C   A+    + +H   ++     D
Sbjct: 702 SAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWD 761

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V +  ALV++YAK G +  A  +F  M +R+++ WN M+  +   G   EAL +F +   
Sbjct: 762 VFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNR 821

Query: 178 GGTKPDHVSF 187
            G +PD V+ 
Sbjct: 822 TGLRPDDVTL 831



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 112/262 (42%), Gaps = 29/262 (11%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            + +H   + +GL  +V V  +LV++Y K G + E+  +FD M  ++ V  + +++ Y  
Sbjct: 746 AESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVD 805

Query: 65  TG-DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
           TG ++E+++ +F E     L    + L                C   R    K  ++E  
Sbjct: 806 TGLEYEALL-LFSEFNRTGLRPDDVTL----------------CTLARVVKSKQNVLEWQ 848

Query: 124 LVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           L  L A      +  ++F+        ++I WN  +S F Q G   EA+  F DM     
Sbjct: 849 LKQLKA------YGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRV 902

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D ++F+ +LS  + +  ++ G K    +     +   +   NC++++  + G +  A 
Sbjct: 903 ACDGLTFVVMLSVVAGLNCLELG-KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRAR 961

Query: 241 TLIENADCRHDSSLWEVLLGAC 262
           T+    +   D   W  ++  C
Sbjct: 962 TVFWQMN-EVDLVSWNTMISGC 982



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 14/179 (7%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--V 146
           +LR     + L LGK  H + +      D  + + L+ +Y+KCG +  A ++F   P   
Sbjct: 632 ILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTS 691

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R+L+TWN+++S  A   R  +   +F  +          +   V   C     +      
Sbjct: 692 RDLVTWNAILSAHADKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMC-----LLSASPS 744

Query: 207 FASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            A     Y +K  ++        +V++  + G + EA  L +    R D  LW V++ A
Sbjct: 745 AAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLR-DVVLWNVMMKA 802


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 136/317 (42%), Positives = 198/317 (62%), Gaps = 7/317 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV+  +S++  Y  CG + E+  +FDK   ++ V  +A++ GY Q   F+  + +FREM+
Sbjct: 409 NVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQ 468

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               + D F+   +L  CA L AL  GK +H          DV++ +AL+++Y+KCGCVD
Sbjct: 469 IQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVD 528

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            + +IF ++  ++  +W S+I G A NG+  EALR+F +M   G KPD ++FIGVLSACS
Sbjct: 529 KSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACS 588

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN---ADCRHDS 252
           H GL++ GR+ F SM K +RI+PK+EHY C++DLLGRAGLL+EAE LI+     +C    
Sbjct: 589 HGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVV 648

Query: 253 SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312
            L+  LL AC    N  + ER+AKK+  ++      + LL N+Y +V RW DA K+R  M
Sbjct: 649 PLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKM 708

Query: 313 KYSGVKKMPGKSWIEAN 329
           K  GVKKMPG S IE +
Sbjct: 709 KELGVKKMPGCSLIEVD 725



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 43/308 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QG++V   ++  G+  +  V +SL+DMY +   V+ + ++FD+M  ++SVS + ++ G
Sbjct: 259 VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 318

Query: 62  YCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y +   FE  I  FREM     E+ D  +    L AC  L  L LG E+H  Y+R+    
Sbjct: 319 YVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIH-NYVRKELGF 377

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD--- 173
              I++AL+D+YAKCGC++ A  IF +M ++N+I W SMISG+   G   EA  +FD   
Sbjct: 378 TTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSP 437

Query: 174 ----------------------------DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
                                       +M     KPD  + + +L+ C+ +G +++G K
Sbjct: 438 VRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQG-K 496

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA-ETLIENADCRHDSSLWEVLLGACTT 264
                  E RI   +     ++++  + G ++++ E   E  D   D++ W  ++  C  
Sbjct: 497 WIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELED--KDTASWTSII--CGL 552

Query: 265 FRNAHVAE 272
             N   +E
Sbjct: 553 AMNGKTSE 560



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 129/250 (51%), Gaps = 9/250 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL--VDESHRVFDKMLKKNSVSSSALL 59
           + Q K++ +++  +GL G+    + L+       L  +  + ++F+ +   +    + ++
Sbjct: 156 MDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMV 215

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           + Y + G    V+ +F+++ E     D F++  VL+A   L  +R G++V    ++    
Sbjct: 216 KMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD 275

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D  + ++L+D+Y +   V+ A ++F +M  R+ ++WN MISG+ +  R E+A+  F +M
Sbjct: 276 LDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREM 335

Query: 176 -TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
             EG  KPD  + +  LSAC+ +  ++ G +    + KE     +I+  N ++D+  + G
Sbjct: 336 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRID--NALLDMYAKCG 393

Query: 235 LLEEAETLIE 244
            L  A  + +
Sbjct: 394 CLNIARNIFD 403



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 21/160 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK +H  +    +  +VVV ++L++MY KCG VD+S  +F ++  K++ S ++++ G
Sbjct: 492 LEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICG 551

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLG-------KEVHC--Q 108
               G     +R+F EME +    D  +F  VL AC+    +  G       K+VH    
Sbjct: 552 LAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEP 611

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
            +   GC        ++DL  + G +D A ++  ++P+ N
Sbjct: 612 KVEHYGC--------VIDLLGRAGLLDEAEELIQEIPIEN 643


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 129/330 (39%), Positives = 203/330 (61%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H  ++ +GL  + VV  SL+DMYGKCG ++E+  +FDKM +++ VS + ++  
Sbjct: 267 LHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHT 326

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  E    +FR +   ++    F+F  VL ACA LAA  LGK++H   +R      
Sbjct: 327 YLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSF 386

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               SALV +Y+KCG ++ A  +F  +P  +L +W S++ G+AQ+G+ ++AL  F+ + +
Sbjct: 387 SSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLK 446

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GTKPD ++FIGVLSAC+H GL+D+G ++F S+ +++ +   I+HY C++DLL RAG   
Sbjct: 447 SGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFT 506

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE++I     + D  +W  LLG C    N  +A+R AK + E++P+   +YV L N+Y 
Sbjct: 507 EAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYA 566

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           + G   +   IR  M   G+ K PG SWIE
Sbjct: 567 SAGMRAEEANIRETMDSRGIVKKPGMSWIE 596



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 139/279 (49%), Gaps = 38/279 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+GK+VHA + T G  G + + + L+DMY KCG + ++ +VFD+M+ ++  S + ++ G
Sbjct: 135 LKEGKQVHAHIKTSGSIG-LYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISG 193

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACA--------------------------- 94
           Y + G+FE    +F +M   D FS+  ++  C                            
Sbjct: 194 YVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCT 253

Query: 95  ---------GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
                     + +L +GK++H   +R     D ++  +L+D+Y KCG ++ A  IF +M 
Sbjct: 254 ISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKME 313

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R++++W +MI  + +NGR EE   +F  +      P+  +F GVL+AC+ +   D G++
Sbjct: 314 ERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQ 373

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
             A M +           + +V +  + G +E A+++ E
Sbjct: 374 IHAYMVR-VGFDSFSSAASALVHMYSKCGDIENAKSVFE 411



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 63  CQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
           C        +++   +E+     +  +L+ C    AL+ GK+VH  +I+ SG   + I +
Sbjct: 99  CGQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHA-HIKTSGSIGLYISN 157

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            L+D+YAKCG +  A ++F +M  R+L +WN MISG+ + G  E+A  +FD M       
Sbjct: 158 RLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKM----PNR 213

Query: 183 DHVSFIGVLSAC 194
           D+ S+  ++S C
Sbjct: 214 DNFSWTAIISGC 225


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 129/332 (38%), Positives = 208/332 (62%), Gaps = 4/332 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++HA  I   +  +V V ++L+D+Y KCG ++++  VF+ M ++N V+ S+++ G+ Q 
Sbjct: 119 RQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQN 178

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
             +E  + +F   +E+ L    F    V+RACAGLAAL  G++VH    R     +  + 
Sbjct: 179 ELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVA 238

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SALVD+YAKCG ++ A+ +F  +  +N++ WN++ISGFA++    E + +F++M + G +
Sbjct: 239 SALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQ 298

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD V+++ VLSAC H+GL+D+GR +F  MT+E+ + P + HY+CMVD+LGR GL+ EA  
Sbjct: 299 PDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHE 358

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L+        +S+W  LL +C    N  +AE  AK + E++PD   +YVLL N Y A  +
Sbjct: 359 LMTKMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKK 418

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           W +A K R  +K S + K  GKSWIE   K++
Sbjct: 419 WEEAAKARKSLKGSEILKERGKSWIEIKDKVH 450



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 139/259 (53%), Gaps = 6/259 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK  H +VI LGL  + +  + L++MY KCGL+  + +VFD++ +++ VS + ++    Q
Sbjct: 17  GKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQ 76

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G+ E  I IF EM+        F+   V+ ACA    +   +++H   I+     DV +
Sbjct: 77  NGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFV 136

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+YAKCG ++ A  +F  MP RN +TW+S+++GF QN   EE L +F    E G 
Sbjct: 137 GTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGL 196

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           + +      V+ AC+ +  +  GR+  A + +     P     + +VD+  + G +EEA 
Sbjct: 197 ENNQFMISSVIRACAGLAALIEGRQVHAIVCRT-GFGPNNFVASALVDMYAKCGSIEEAY 255

Query: 241 TLIENADCRHDSSLWEVLL 259
            L  N + + +  LW  ++
Sbjct: 256 VLFCNIE-KKNVVLWNAII 273



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 6/173 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G++VHA V   G   N  V S+LVDMY KCG ++E++ +F  + KKN V  +A++ G
Sbjct: 216 LIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISG 275

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           + +      V+ +F EM++     D  ++  VL AC  +  +  G+       R      
Sbjct: 276 FAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSP 335

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISGFAQNGRGEEA 168
           +V+  S +VD+  + G V  AH++  +MP     + W S+++    +G  E A
Sbjct: 336 NVLHYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHGNLELA 388



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 1/172 (0%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ CA       GK  H Q IR     D +  + L+++Y+KCG +  A ++F ++P R+
Sbjct: 4   LLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERS 63

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +++WN MI    QNG  E+A+ IF +M   G+     +   V+ AC+  G +   R+  A
Sbjct: 64  MVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHA 123

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              K   +   +     ++D+  + G +E+A  + E    R+D +   ++ G
Sbjct: 124 FAIKAV-VDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAG 174


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 206/333 (61%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++V++  + LG+     V +SL+ MY + G ++++ + FD + +KN VS +A++ GY +
Sbjct: 180 GEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 239

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               E    +F E+ +    I  F+F  +L   A + A+  G+++H + ++     +  I
Sbjct: 240 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI 299

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+ +Y++CG ++ A Q+F +M  RN+I+W SMI+GFA++G    AL +F  M E GT
Sbjct: 300 CNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 359

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ ++++ VLSACSH+G+I  G+KHF SM KE+ I P++EHY CMVDLLGR+GLL EA 
Sbjct: 360 KPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAM 419

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I +     D+ +W  LLGAC    N  +    A+ I+E +PD   +Y+LL N++ + G
Sbjct: 420 EFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 479

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W D  KIR  MK   + K  G SWIE  ++++
Sbjct: 480 QWKDVVKIRKSMKERNLIKEAGCSWIEVENRVH 512



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 120/212 (56%), Gaps = 17/212 (8%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAG 95
           +++VFDKM ++N V+ + ++  + Q G     I +F +ME      D F++  VL AC  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC---GCVDFAHQIFLQMPVRNLITW 152
           L  L LGK++H + IR     DV +  +LVD+YAKC   G VD + ++F QMP  N+++W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 153 NSMISGFAQNGR-GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
            ++I+ +AQ+G   +EA+ +F  M  G  +P+H SF  VL AC ++     G + ++   
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS--- 185

Query: 212 KEYRIKPKIEHYNC----MVDLLGRAGLLEEA 239
             Y +K  I   NC    ++ +  R+G +E+A
Sbjct: 186 --YAVKLGIASVNCVGNSLISMYARSGRMEDA 215



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 174/328 (53%), Gaps = 16/328 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSAL 58
           L  GK++H++VI LGL  +V V  SLVDMY KC   G VD+S +VF++M + N +S +A+
Sbjct: 72  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 131

Query: 59  LQGYCQTGDFE-SVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +  Y Q+G+ +   I +F +M       + FSF  VL+AC  L+    G++V+   ++  
Sbjct: 132 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 191

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
                 + ++L+ +YA+ G ++ A + F  +  +NL+++N+++ G+A+N + EEA  +F+
Sbjct: 192 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 251

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGR 232
           ++ + G      +F  +LS  + +G + +G + H   +   Y+    I   N ++ +  R
Sbjct: 252 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI--CNALISMYSR 309

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
            G +E A  +    + R+  S W  ++        A  A  +  K++E   KP+  ++YV
Sbjct: 310 CGNIEAAFQVFNEMEDRNVIS-WTSMITGFAKHGFATRALEMFHKMLETGTKPN-EITYV 367

Query: 291 LLDNVYRAVGRWNDAFK-IRTLMKYSGV 317
            + +    VG  ++  K   ++ K  G+
Sbjct: 368 AVLSACSHVGMISEGQKHFNSMYKEHGI 395


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  261 bits (666), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 131/334 (39%), Positives = 213/334 (63%), Gaps = 10/334 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+ +   G   N+ + ++L+D+Y KCG ++ +H +F+ +  K+ +S + L+ GY  
Sbjct: 229 GRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAY 288

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI- 119
               +  + +F+EM    E  +  +   +L ACA L A+ +G+ +H  YI +   K +I 
Sbjct: 289 INHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHV-YIDKK-LKGIIT 346

Query: 120 ---IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              ++++L+D+YAKCG ++ A+Q+F  +  ++L + N+MI GFA +GR + A  +   M 
Sbjct: 347 NTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMK 406

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +PD ++F+G+LSACSH GL D GRK F SMT +YRI+PK+EHY CM+DLLGR+GL 
Sbjct: 407 KDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLF 466

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EAE LI +     D  +W  LL AC   +N  + E +A+K+M+++P    SYVLL N+Y
Sbjct: 467 KEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIY 526

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
               RW+D  ++RTL+   G+KK+PG S IE +S
Sbjct: 527 ATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDS 560



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 153/294 (52%), Gaps = 36/294 (12%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD----------------- 45
           ++GK++HA+++  GL  ++ V +SL+ MY + G+V+++H+VFD                 
Sbjct: 95  QEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGY 154

Query: 46  ----------KMLK----KNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFG 87
                     KM      K+ VS +A++ GY + G ++  + +F EM ++D+     +  
Sbjct: 155 ASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMA 214

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
            VL  C     + LG+++H          ++ + +AL+DLY+KCG ++ AH +F  +  +
Sbjct: 215 TVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYK 274

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           ++I+WN++I G+A     +EAL +F +M + G  P+ V+ + +L AC+H+G ID GR   
Sbjct: 275 DVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIH 334

Query: 208 ASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             + K+ + I         ++D+  + G +E A  + +    +  SS   ++ G
Sbjct: 335 VYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFG 388



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 148/310 (47%), Gaps = 46/310 (14%)

Query: 13  ITLGLCGNVVVESSLVDMYGKCGLVDESH------RVFDKMLKKNSVSSSALLQGYCQTG 66
           I +GL       S L+D    C L    H       VF  + + N +S + +++G+  + 
Sbjct: 1   IKIGLHNTNYALSKLLDF---CILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSS 57

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
           D  S + ++  M  + L    ++F  + ++CA   A + GK++H Q ++     D+ + +
Sbjct: 58  DPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHT 117

Query: 123 ALVDLYAKCGCVDFAHQIFL-------------------------------QMPVRNLIT 151
           +L+ +YA+ G V+ AH++F                                ++P++++++
Sbjct: 118 SLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVS 177

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
           WN+MISG+A+ GR +EAL +F++M +   KPD  +   VLS C+H G ++ GR+   S  
Sbjct: 178 WNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQ-IHSWI 236

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
             +     ++  N ++DL  + G +E A  L E    + D   W  L+G      +   A
Sbjct: 237 DNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYK-DVISWNTLIGGYAYINHHKEA 295

Query: 272 ERVAKKIMEL 281
             V +++++L
Sbjct: 296 LLVFQEMLKL 305



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 83/185 (44%), Gaps = 5/185 (2%)

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           + +A  +F  +   N ++WN+MI G A +     AL ++  M   G  P+  +F  +  +
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+       G++  A + K Y +   +  +  ++ +  + G++E+A  + + +  R   S
Sbjct: 88  CAKSKAAQEGKQIHAQILK-YGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVS 146

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
              ++ G    + +    ++  K   E+     +S+  + + Y  +GR+ +A ++   M 
Sbjct: 147 YTAMITG----YASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMM 202

Query: 314 YSGVK 318
              VK
Sbjct: 203 KMDVK 207


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  261 bits (666), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 206/333 (61%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++V++  + LG+     V +SL+ MY + G ++++ + FD + +KN VS +A++ GY +
Sbjct: 355 GEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 414

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               E    +F E+ +    I  F+F  +L   A + A+  G+++H + ++     +  I
Sbjct: 415 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI 474

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+ +Y++CG ++ A Q+F +M  RN+I+W SMI+GFA++G    AL +F  M E GT
Sbjct: 475 CNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 534

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ ++++ VLSACSH+G+I  G+KHF SM KE+ I P++EHY CMVDLLGR+GLL EA 
Sbjct: 535 KPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAM 594

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I +     D+ +W  LLGAC    N  +    A+ I+E +PD   +Y+LL N++ + G
Sbjct: 595 EFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 654

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W D  KIR  MK   + K  G SWIE  ++++
Sbjct: 655 QWKDVVKIRKSMKERNLIKEAGCSWIEVENRVH 687



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 138/249 (55%), Gaps = 19/249 (7%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMYGK-CGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           G+ ++  V+  G L  +V V   L+DM+ K  G +  +++VFDKM ++N V+ + ++  +
Sbjct: 147 GEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRF 206

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G     I +F +ME      D F++  VL AC  L  L LGK++H + IR     DV
Sbjct: 207 AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDV 266

Query: 119 IIESALVDLYAKC---GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR-GEEALRIFDD 174
            +  +LVD+YAKC   G VD + ++F QMP  N+++W ++I+ + Q+G   +EA+ +F  
Sbjct: 267 CVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCK 326

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC----MVDLL 230
           M  G  +P+H SF  VL AC ++     G + ++     Y +K  I   NC    ++ + 
Sbjct: 327 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMY 381

Query: 231 GRAGLLEEA 239
            R+G +E+A
Sbjct: 382 ARSGRMEDA 390



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 166/310 (53%), Gaps = 15/310 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSAL 58
           L  GK++H++VI LGL  +V V  SLVDMY KC   G VD+S +VF++M + N +S +A+
Sbjct: 247 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 306

Query: 59  LQGYCQTGDFE-SVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +  Y Q+G+ +   I +F +M    +    FSF  VL+AC  L+    G++V+   ++  
Sbjct: 307 ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 366

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
                 + ++L+ +YA+ G ++ A + F  +  +NL+++N+++ G+A+N + EEA  +F+
Sbjct: 367 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 426

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGR 232
           ++ + G      +F  +LS  + +G + +G + H   +   Y+    I   N ++ +  R
Sbjct: 427 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI--CNALISMYSR 484

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
            G +E A  +    + R+  S W  ++        A  A  +  K++E   KP+  ++YV
Sbjct: 485 CGNIEAAFQVFNEMEDRNVIS-WTSMITGFAKHGFATRALEMFHKMLETGTKPN-EITYV 542

Query: 291 LLDNVYRAVG 300
            + +    VG
Sbjct: 543 AVLSACSHVG 552



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 119/212 (56%), Gaps = 9/212 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQ 60
            + GK VH K++  GL  + VV ++L+ +Y KCG  + +  +F+ M  K++ VS SA++ 
Sbjct: 42  FQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVS 101

Query: 61  GYCQTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGC- 115
            +         I  F +M E+  +     F  V+RAC+      +G+ ++  ++ ++G  
Sbjct: 102 CFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIY-GFVVKTGYL 160

Query: 116 -KDVIIESALVDLYAK-CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
             DV +   L+D++ K  G +  A+++F +MP RNL+TW  MI+ FAQ G   +A+ +F 
Sbjct: 161 EADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFL 220

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           DM   G  PD  ++  VLSAC+ +GL+  G++
Sbjct: 221 DMELSGYVPDRFTYSSVLSACTELGLLALGKQ 252



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 68  FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127
           F ++  + ++    DL ++ I+L++C      +LGK VH + ++     D ++ + L+ L
Sbjct: 11  FSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISL 70

Query: 128 YAKCGCVDFAHQIFLQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           Y+KCG  + A  IF  M   R+L++W++M+S FA N    +A+  F DM E G  P+   
Sbjct: 71  YSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYC 130

Query: 187 FIGVLSACSH 196
           F  V+ ACS+
Sbjct: 131 FAAVIRACSN 140


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  261 bits (666), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 128/333 (38%), Positives = 205/333 (61%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+E+H  V+     G   VES+L+DMY KCG +D SH +F KM  K+ V+ ++++  
Sbjct: 466 MRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISS 525

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G+ E  + +FR+M     + +  +   +L ACAGL A+  GKE+H   I+     D
Sbjct: 526 FAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRAD 585

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  ESAL+D+Y KCG ++ A ++F  MP +N ++WNS+IS +  +G  +E++ +   M E
Sbjct: 586 LFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQE 645

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K DHV+F+ ++SAC+H G +  G + F  MT+EY I+P++EH +CMVDL  RAG L+
Sbjct: 646 EGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLD 705

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A   I +   + D+ +W  LL AC   RN  +AE  ++++ +L P     YVL+ N+  
Sbjct: 706 KAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINA 765

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
             GRW+   K+R LMK   V+K+PG SW++ N+
Sbjct: 766 VAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVNN 798



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 150/264 (56%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            KQGKE+H  ++      +V + S+LVD+Y KC  V  +  VFD     + V  S ++ G
Sbjct: 365 FKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISG 424

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV----LRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y      E+ +++FR +  + +    ++    L ACA +AA+R+G+E+H   ++ +    
Sbjct: 425 YVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGR 484

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +ESAL+D+Y+KCG +D +H +F +M  ++ +TWNSMIS FAQNG  EEAL +F  M  
Sbjct: 485 CYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIM 544

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K ++V+   +LSAC+ +  I  G++    + K   I+  +   + ++D+ G+ G LE
Sbjct: 545 EGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKG-PIRADLFAESALIDMYGKCGNLE 603

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A  + E+   +++ S W  ++ A
Sbjct: 604 LALRVFEHMPEKNEVS-WNSIISA 626



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 116/208 (55%), Gaps = 4/208 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VH     LGL  ++ V S+L+ MY   GL+D +  VFD M +++ V  + ++ G
Sbjct: 163 LHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDG 222

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + GD  S + +FR M     + +  +    L  CA  A L  G ++H   ++     +
Sbjct: 223 YVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPE 282

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + LV +YAKC C++ A ++F  MP  +L+TWN MISG  QNG  ++ALR+F DM +
Sbjct: 283 VAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQK 342

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G +PD V+   +L A + +    +G++
Sbjct: 343 SGLQPDSVTLASLLPALTELNGFKQGKE 370



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 130/265 (49%), Gaps = 8/265 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H   +  GL   V V ++LV MY KC  ++E+ R+F  M + + V+ + ++ G
Sbjct: 264 LLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISG 323

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  +  +R+F +M+    + D  +   +L A   L   + GKE+H   +R     D
Sbjct: 324 CVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVD 383

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SALVD+Y KC  V  A  +F      +++  ++MISG+  N   E A+++F  +  
Sbjct: 384 VFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLA 443

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G KP+ V     L AC+ M  +  G++ H   +   Y  +  +E  + ++D+  + G L
Sbjct: 444 LGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVE--SALMDMYSKCGRL 501

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           + +  +      + D   W  ++ +
Sbjct: 502 DLSHYMFSKMSAK-DEVTWNSMISS 525



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 18/277 (6%)

Query: 2   LKQGKEVHAKVITLGLC-----GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS---V 53
           L  G  +HA+ +T GL      G   +++ LV MY       ++  VF  + +  +   +
Sbjct: 52  LPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAAL 111

Query: 54  SSSALLQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHC 107
             + L++G+   G     +  + +M         D  +   V+++CA L AL LG+ VH 
Sbjct: 112 PWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVH- 170

Query: 108 QYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
           +  R  G  +D+ + SAL+ +YA  G +D A ++F  M  R+ + WN M+ G+ + G   
Sbjct: 171 RTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVA 230

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
            A+ +F  M   G  P+  +    LS C+    +  G +   ++  +Y ++P++   N +
Sbjct: 231 SAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQ-LHTLAVKYGLEPEVAVANTL 289

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           V +  +   LEEA  L      R D   W  ++  C 
Sbjct: 290 VSMYAKCQCLEEAWRLFGLMP-RDDLVTWNGMISGCV 325


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 209/330 (63%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H+ V+ +GL  NV V ++L+D+Y KCG ++ S ++F    +KN V+ + ++ G
Sbjct: 323 LNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVG 382

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q GD E  + +F  M  +D+     ++  VLRA A L AL  G+++H   I+    KD
Sbjct: 383 YVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKD 442

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ ++L+D+YAKCG +D A   F +M  ++ ++WN++I G++ +G G EAL +FD M +
Sbjct: 443 SVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQ 502

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             +KP+ ++F+GVLSACS+ GL+D+GR HF SM ++Y I+P IEHY CMV LLGR+G  +
Sbjct: 503 SNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFD 562

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI     +    +W  LLGAC   +N  + +  A++++E++P    ++VLL N+Y 
Sbjct: 563 EAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYA 622

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
              RW++   +R  MK   VKK PG SW+E
Sbjct: 623 TAKRWDNVAYVRKNMKKKKVKKEPGLSWVE 652



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 138/263 (52%), Gaps = 7/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K GK VH   + +    ++ V  +L+++Y K G + E+ + F++M K + +  S ++  
Sbjct: 221 FKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISR 280

Query: 62  YCQTGDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q+   +  + +F  M +  +     F+F  VL+ACA L  L LG ++H   ++     
Sbjct: 281 YAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDS 340

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V + +AL+D+YAKCG ++ + ++F     +N + WN++I G+ Q G GE+AL +F +M 
Sbjct: 341 NVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNML 400

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               +P  V++  VL A + +  ++ GR+  +   K    K  +   N ++D+  + G +
Sbjct: 401 GLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVA-NSLIDMYAKCGRI 459

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           ++A    +  D + D   W  L+
Sbjct: 460 DDARLTFDKMD-KQDEVSWNALI 481



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 139/258 (53%), Gaps = 6/258 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VHA V  LG   +  V ++L+D Y  CG VD + +VFD +  K+ VS + ++  Y +   
Sbjct: 126 VHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYC 185

Query: 68  FESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            E  + +F +M  +    + F+    L++C GL A ++GK VH   ++    +D+ +  A
Sbjct: 186 HEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIA 245

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKP 182
           L++LY K G +  A Q F +MP  +LI W+ MIS +AQ+ + +EAL +F  M +     P
Sbjct: 246 LLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVP 305

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           ++ +F  VL AC+ + L++ G +  + + K   +   +   N ++D+  + G +E +  L
Sbjct: 306 NNFTFASVLQACASLVLLNLGNQIHSCVLK-VGLDSNVFVSNALMDVYAKCGEIENSVKL 364

Query: 243 IENADCRHDSSLWEVLLG 260
              +  +++ +   +++G
Sbjct: 365 FTGSTEKNEVAWNTIIVG 382



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 104/204 (50%), Gaps = 4/204 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H  ++  G   ++  ++ L++ Y   G ++++ ++FD+M   N+VS   L QG+ +
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 65  TGDFESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +  F+   R+      E  E++ F F  +L+    +        VH    +     D  +
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFV 141

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D Y+ CG VD A Q+F  +  +++++W  M++ +A+N   E++L +F  M   G 
Sbjct: 142 GTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGY 201

Query: 181 KPDHVSFIGVLSACSHMGLIDRGR 204
           +P++ +    L +C+ +     G+
Sbjct: 202 RPNNFTISAALKSCNGLEAFKVGK 225


>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
          Length = 799

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 126/318 (39%), Positives = 199/318 (62%), Gaps = 4/318 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +  V S++VDMY KCG++DE+ ++ D++  +  VS +A+L G+    + E+  + F EM 
Sbjct: 422 DAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEML 481

Query: 80  EI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           ++    D F+F  VL  CA LA + LGK++H Q I++    D  I S LVD+YAKCG + 
Sbjct: 482 DMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMP 541

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            +  +F ++  R+ ++WN+MI G+A +G G EALR+F+ M +    P+H +F+ VL ACS
Sbjct: 542 DSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACS 601

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H+GL D G ++F  MT  Y+++P++EH+ CMVD+LGR+   +EA   I +   + D+ +W
Sbjct: 602 HVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIW 661

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
           + LL  C   ++  +AE  A  ++ L PD    Y+LL NVY   G+W D  + R L+K  
Sbjct: 662 KTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQG 721

Query: 316 GVKKMPGKSWIEANSKLN 333
            +KK PG SWIEA S+++
Sbjct: 722 RLKKEPGCSWIEAQSEMH 739



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           + V  ++++  Y   G +  +  +FD M   + VS +AL+ GYCQ G F+  + +F EM 
Sbjct: 82  DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 D  +F ++L++C+ L  L LG +VH   ++     DV   SALVD+Y KC  +D
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A   F  MP RN ++W S I+G  QN +    L +F +M   G      S+     +C+
Sbjct: 202 DALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 261

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            M  ++ GR+  A   K      ++     +VD+  +A  L +A
Sbjct: 262 AMSCLNTGRQLHAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDA 304



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 37/298 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G +VHA  +  GL  +V   S+LVDMYGKC  +D++   F  M ++N VS  + + G
Sbjct: 165 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAG 224

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q   +   + +F EM+ + L     S+    R+CA ++ L  G+++H   I+     D
Sbjct: 225 CVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSD 284

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ +A+VD+YAK   +  A + F  +P   + T N+M+ G                M  
Sbjct: 285 RVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLF--------------MIR 330

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE--HYNCMVDLLGRAGL 235
              + D VS  GV SAC+               TK Y    ++       ++DL G+   
Sbjct: 331 SSIRFDVVSLSGVFSACAE--------------TKGYFPGQQVHCLAIKSVLDLYGKCKA 376

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           L EA  + +    + DS  W  ++ A    +N H  + +      L+ D  ++  ++D
Sbjct: 377 LMEAYLIFQGMK-QKDSVSWNAIIAALE--QNGHYDDTILHFNEMLRFDAFVASTVVD 431



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 4/97 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK++H ++I   +  +  + S+LVDMY KCG + +S  VF+K+ K++ VS +A++ G
Sbjct: 505 IELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICG 564

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACA 94
           Y   G     +R+F  M++ ++     +F  VLRAC+
Sbjct: 565 YALHGLGVEALRMFERMQKENVVPNHATFVAVLRACS 601



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +D +  + ++  Y+  G +  A  +F  MP  ++++WN+++SG+ Q G  +E++ +F +M
Sbjct: 81  RDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEM 140

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  PD  +F  +L +CS +  +  G +  A   K   ++  +   + +VD+ G+   
Sbjct: 141 ARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKT-GLEIDVRTGSALVDMYGKCRS 199

Query: 236 LEEA 239
           L++A
Sbjct: 200 LDDA 203



 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + L+ +YA+C     A ++F  MP R+ ++WN+M++ ++  G    A+ +FD M + 
Sbjct: 53  FVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPD- 111

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
              PD VS+  ++S     G+       F  M +
Sbjct: 112 ---PDVVSWNALVSGYCQRGMFQESVDLFVEMAR 142


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 127/316 (40%), Positives = 194/316 (61%), Gaps = 13/316 (4%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKM--------LKKNSVSSSALLQGYCQTGDFESVIRIFR 76
           ++L+  + + GL DE+  +F ++        L+ N VS SA++ G+   G  +  + +FR
Sbjct: 248 NALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFR 307

Query: 77  EMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132
            M+   + +  +    VL  CA LAAL LG+E+H   +R     ++++ + LV++YAKCG
Sbjct: 308 RMQHAKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCG 367

Query: 133 CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
           C+   H IF +   ++LI+WNSMI+G+  +G G  AL  FD M + G KPD V+F+ VLS
Sbjct: 368 CLKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLS 427

Query: 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           +CSH GL+  GR+ F  M K+YRI+P++EHY CMVDLLGRAGLL EA  +++N     ++
Sbjct: 428 SCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNA 487

Query: 253 SLWEVLLGACTTFRNAHVAERVAKKIMELK-PDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311
            +W  LL +C    N  +AE  A  +  L   +   +Y+LL N+Y A GRW D+ ++RT 
Sbjct: 488 CVWGALLNSCRMHNNTEIAEETASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTS 547

Query: 312 MKYSGVKKMPGKSWIE 327
            K  G+KK PG+SWI+
Sbjct: 548 AKTKGLKKNPGQSWIK 563



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 50/245 (20%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H  V+ +G   ++ V + L+ MY K G + ++  +FD+M  ++ +S + ++  Y  
Sbjct: 61  GKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAF 120

Query: 65  TGDFESVIRIFREMEE--------------------------IDLF-------------S 85
             D    + IF+ ME                           ++LF             +
Sbjct: 121 NYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEA 180

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV-IIESALVDLYAKCGCVDFAHQIFLQM 144
             +V+  CA L A    K +H +Y  + G ++   ++SAL+ +Y K G V+ A  +FL+M
Sbjct: 181 LAVVISICADLGAFVRAKIIH-EYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEM 239

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG----TKPDHVSFIGVLSACSHMGLI 200
             ++L +WN++I+  A+ G  +EAL IF  +   G     +P+ VS+  ++      G  
Sbjct: 240 KNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIID-----GFA 294

Query: 201 DRGRK 205
            +GR+
Sbjct: 295 SKGRE 299



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 4/139 (2%)

Query: 76  REMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131
           R M +I    D F+F +V+RACA + +  LGK +H   +       + + + L+ +YAK 
Sbjct: 31  RRMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKL 90

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           G +  A  +F +M VR+ I+WN+M+S +A N     AL IF  M   G +P+ V++  ++
Sbjct: 91  GRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLI 150

Query: 192 SACSHMGLIDRGRKHFASM 210
           S+ +  G  +   + F  M
Sbjct: 151 SSYARSGWHEEAMELFGLM 169



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 86/162 (53%), Gaps = 6/162 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+H  V+   +  N++V + LV+MY KCG + E H +F+K  +K+ +S ++++ G
Sbjct: 334 LHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITG 393

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G   + +  F +M ++    D  +F  VL +C+    +  G+ +  Q +++   + 
Sbjct: 394 YGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEP 453

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMIS 157
            +   A +VDL  + G +  A +I   MPV  N   W ++++
Sbjct: 454 QMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLN 495


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 142/340 (41%), Positives = 198/340 (58%), Gaps = 13/340 (3%)

Query: 1   RLKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           RL  GKE+HA V+    L  N  V S+LVDMY  C  V+   RVFD +L +     +A++
Sbjct: 229 RLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMI 288

Query: 60  QGYCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACA-GLAALRLGKEVHCQYIRRS 113
            GY + G  E  + +F EM ++     +  +   V+ AC   LAA+  GKE+H   IR  
Sbjct: 289 SGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNM 348

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D+ + SALVD+YAKCGC++ + ++F +MP +N+ITWN +I     +G+GEEAL +F 
Sbjct: 349 LASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFK 408

Query: 174 DMTE-----GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           +M       G  KP+ V+FI V +ACSH GLI  G   F  M  ++ ++P  +HY C+VD
Sbjct: 409 NMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVD 468

Query: 229 LLGRAGLLEEAETLIENADCRHDS-SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287
           LLGRAG LEEA  L+       D    W  LLGAC   +N  + E  AK ++ L+P+   
Sbjct: 469 LLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVAS 528

Query: 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            YVLL N+Y + G WN A ++R  M+  GVKK PG SWIE
Sbjct: 529 HYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE 568



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 144/289 (49%), Gaps = 30/289 (10%)

Query: 2   LKQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCG--------------------LVDES 40
           LK G+++HA  +  G    +V V ++LV+MYGKCG                     VD+S
Sbjct: 108 LKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDS 167

Query: 41  HRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGL 96
             +F+  + ++ VS + ++  + Q+  F   +  FR M     E+D  +   VL AC+ L
Sbjct: 168 KALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHL 227

Query: 97  AALRLGKEVHCQYIRRSG-CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
             L +GKE+H   +R +   ++  + SALVD+Y  C  V+   ++F  +  R +  WN+M
Sbjct: 228 ERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAM 287

Query: 156 ISGFAQNGRGEEALRIFDDMTE-GGTKPDHVSFIGVLSACSH-MGLIDRGRKHFASMTKE 213
           ISG+A+NG  E+AL +F +M +  G  P+  +   V+ AC H +  I +G++  A   + 
Sbjct: 288 ISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRN 347

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
             +   I   + +VD+  + G L  +  +  N     +   W VL+ AC
Sbjct: 348 M-LASDITVGSALVDMYAKCGCLNLSRRVF-NEMPNKNVITWNVLIMAC 394



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 25/172 (14%)

Query: 59  LQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS- 113
           L+   ++ DF   I  + EM       D F+F  VL+A +GL  L+ G+++H   ++   
Sbjct: 64  LRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGY 123

Query: 114 GCKDVIIESALVDLYAKCGC--------------------VDFAHQIFLQMPVRNLITWN 153
           G   V + + LV++Y KCG                     VD +  +F     R++++WN
Sbjct: 124 GSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWN 183

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +MIS F+Q+ R  EAL  F  M   G + D V+   VL ACSH+  +D G++
Sbjct: 184 TMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKE 235



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P R+  +W   +    ++    EA+  + +MT  G +PD+ +F  VL A S +  +  G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
           +  A+  K       +   N +V++ G+ G + + +T   NA
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGD-KTFTNNA 153


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 132/307 (42%), Positives = 191/307 (62%), Gaps = 4/307 (1%)

Query: 31  YGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSF 86
           +G+ G+VD +  VF+KM +++  + SA+++ Y Q       +  FREM       +  S 
Sbjct: 277 FGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSV 336

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             +L  CA LA L  G+EVH   +R S   DV   SAL+ +Y KCG +D A ++F     
Sbjct: 337 ISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP 396

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           ++++ WNSMI+G+AQ+G GE+AL IF DM   G  PD +++IG L+ACS+ G +  GR+ 
Sbjct: 397 KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREI 456

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SMT    I+P  EHY+CMVDLLGR+GL+EEA  LI+N     D+ +W  L+GAC   R
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHR 516

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           NA +AE  AKK++EL+P     YVLL ++Y +VGRW DA K+R  +    + K PG SWI
Sbjct: 517 NAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWI 576

Query: 327 EANSKLN 333
           E + +++
Sbjct: 577 EYDKRVH 583



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 124/276 (44%), Gaps = 55/276 (19%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R +   +  A + ++    +VV  +SL+  Y + GL+ ++ R+F +M ++N VS + LL 
Sbjct: 92  RRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLG 151

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           G    G      R+F EM +                                   +DV+ 
Sbjct: 152 GLLDAGRVNEARRLFDEMPD-----------------------------------RDVVA 176

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A++  Y + G +  A  +F +MP RN+++W +MISG+AQNG    A ++F+ M E   
Sbjct: 177 WTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER-- 234

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             + VS+  +L      G ++   + F +M +       +   N M+   G+ G+++ A+
Sbjct: 235 --NEVSWTAMLVGYIQAGHVEDAAELFNAMPEH-----PVAACNAMMVGFGQRGMVDAAK 287

Query: 241 TLIENADCRHDSSLW----------EVLLGACTTFR 266
           T+ E    R D + W          E L+ A +TFR
Sbjct: 288 TVFEKMRERDDGT-WSAMIKAYEQNEFLMEALSTFR 322



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 103/194 (53%), Gaps = 6/194 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y + G + E+  +FD+M K+N VS +A++ GY Q G+     ++F  M 
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP 232

Query: 80  EIDLFSFGIVLRACAGLAALRLGK-EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
           E +  S+  +L     +  ++ G  E   +         V   +A++  + + G VD A 
Sbjct: 233 ERNEVSWTAML-----VGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAK 287

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +F +M  R+  TW++MI  + QN    EAL  F +M   G +P++ S I +L+ C+ + 
Sbjct: 288 TVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALA 347

Query: 199 LIDRGRKHFASMTK 212
           ++D GR+  A+M +
Sbjct: 348 VLDYGREVHAAMLR 361



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 33/240 (13%)

Query: 32  GKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSF----- 86
            + G ++ +   F+ M  + + S +ALL GY +    ++ + +FR M   DL S+     
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALIS 87

Query: 87  GIVLR------ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
           G+ LR      A A LA++                  V+  ++L+  Y + G +  A ++
Sbjct: 88  GLSLRRQTLPDAAAALASIPFPP-------------SVVSFTSLLRGYVRHGLLADAIRL 134

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F QMP RN +++  ++ G    GR  EA R+FD+M +     D V++  +LS     G I
Sbjct: 135 FQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDR----DVVAWTAMLSGYCQAGRI 190

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              R  F  M K       +  +  M+    + G +  A  L E    R++ S   +L+G
Sbjct: 191 TEARALFDEMPKR-----NVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVG 245



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+EVHA ++      +V   S+L+ MY KCG +D++ RVF     K+ V  ++++ G
Sbjct: 349 LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITG 408

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV----LRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + IF +M    +   GI     L AC+    ++ G+E+       S  + 
Sbjct: 409 YAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRP 468

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
                S +VDL  + G V+ A  +   MPV  + + W +++
Sbjct: 469 GAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM 509


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 132/307 (42%), Positives = 191/307 (62%), Gaps = 4/307 (1%)

Query: 31  YGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSF 86
           +G+ G+VD +  VF+KM +++  + SA+++ Y Q       +  FREM       +  S 
Sbjct: 277 FGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSV 336

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             +L  CA LA L  G+EVH   +R S   DV   SAL+ +Y KCG +D A ++F     
Sbjct: 337 ISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP 396

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           ++++ WNSMI+G+AQ+G GE+AL IF DM   G  PD +++IG L+ACS+ G +  GR+ 
Sbjct: 397 KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREI 456

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SMT    I+P  EHY+CMVDLLGR+GL+EEA  LI+N     D+ +W  L+GAC   R
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHR 516

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           NA +AE  AKK++EL+P     YVLL ++Y +VGRW DA K+R  +    + K PG SWI
Sbjct: 517 NAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWI 576

Query: 327 EANSKLN 333
           E + +++
Sbjct: 577 EYDKRVH 583



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 55/276 (19%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R +   +  A + ++    +VV  +SL+  Y + GL+ ++ R+F +M ++N VS + LL 
Sbjct: 92  RRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLG 151

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           G    G      R+F EM +                                   +DV+ 
Sbjct: 152 GLLDAGRVNEARRLFDEMPD-----------------------------------RDVVA 176

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A++  Y + G +  A  +F +MP RN+++W +MISG+AQNG    A ++F+ M E   
Sbjct: 177 WTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER-- 234

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             + VS+  +L      G ++   + F +M +       +   N M+   G+ G+++ A+
Sbjct: 235 --NEVSWTAMLVGYIQAGHVEDAAELFNAMPEH-----PVAACNAMMVGFGQRGMVDAAK 287

Query: 241 TLIENADCRHDSSLW----------EVLLGACTTFR 266
           T+ E   C  D   W          E L+ A +TFR
Sbjct: 288 TVFEKM-CERDDGTWSAMIKAYEQNEFLMEALSTFR 322



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 103/194 (53%), Gaps = 6/194 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y + G + E+  +FD+M K+N VS +A++ GY Q G+     ++F  M 
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP 232

Query: 80  EIDLFSFGIVLRACAGLAALRLGK-EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
           E +  S+  +L     +  ++ G  E   +         V   +A++  + + G VD A 
Sbjct: 233 ERNEVSWTAML-----VGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAK 287

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +F +M  R+  TW++MI  + QN    EAL  F +M   G +P++ S I +L+ C+ + 
Sbjct: 288 TVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALA 347

Query: 199 LIDRGRKHFASMTK 212
           ++D GR+  A+M +
Sbjct: 348 VLDYGREVHAAMLR 361



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 33/240 (13%)

Query: 32  GKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSF----- 86
            + G ++ +   F+ M  + + S +ALL GY +    ++ + +FR M   DL S+     
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALIS 87

Query: 87  GIVLR------ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
           G+ LR      A A LA++                  V+  ++L+  Y + G +  A ++
Sbjct: 88  GLSLRRQTLPDAAAALASIPFPP-------------SVVSFTSLLRGYVRHGLLADAIRL 134

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F QMP RN +++  ++ G    GR  EA R+FD+M +     D V++  +LS     G I
Sbjct: 135 FQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDR----DVVAWTAMLSGYCQAGRI 190

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              R  F  M K       +  +  M+    + G +  A  L E    R++ S   +L+G
Sbjct: 191 TEARALFDEMPKR-----NVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVG 245



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+EVHA ++      +V   S+L+ MY KCG +D++ RVF     K+ V  ++++ G
Sbjct: 349 LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITG 408

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV----LRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + IF +M    +   GI     L AC+    ++ G+E+       S  + 
Sbjct: 409 YAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRP 468

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
                S +VDL  + G V+ A  +   MPV  + + W +++
Sbjct: 469 GAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM 509


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 132/307 (42%), Positives = 191/307 (62%), Gaps = 4/307 (1%)

Query: 31  YGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSF 86
           +G+ G+VD +  VF+KM +++  + SA+++ Y Q       +  FREM       +  S 
Sbjct: 277 FGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSV 336

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             +L  CA LA L  G+EVH   +R S   DV   SAL+ +Y KCG +D A ++F     
Sbjct: 337 ISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP 396

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           ++++ WNSMI+G+AQ+G GE+AL IF DM   G  PD +++IG L+ACS+ G +  GR+ 
Sbjct: 397 KDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREI 456

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SMT    I+P  EHY+CMVDLLGR+GL+EEA  LI+N     D+ +W  L+GAC   R
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHR 516

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           NA +AE  AKK++EL+P     YVLL ++Y +VGRW DA K+R  +    + K PG SWI
Sbjct: 517 NAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWI 576

Query: 327 EANSKLN 333
           E + +++
Sbjct: 577 EYDKRVH 583



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 55/276 (19%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R +   +  A + ++    +VV  +SL+  Y + GL+ ++ R+F +M ++N VS + LL 
Sbjct: 92  RRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLG 151

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           G    G      R+F EM +                                   +DV+ 
Sbjct: 152 GLLDAGRVNEARRLFDEMPD-----------------------------------RDVVA 176

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A++  Y + G +  A  +F +MP RN+++W +MISG+AQNG    A ++F+ M E   
Sbjct: 177 WTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER-- 234

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             + VS+  +L      G ++   + F +M +       +   N M+   G+ G+++ A+
Sbjct: 235 --NEVSWTAMLVGYIQAGHVEDAAELFNAMPEH-----PVAACNAMMVGFGQRGMVDAAK 287

Query: 241 TLIENADCRHDSSLW----------EVLLGACTTFR 266
           T+ E   C  D   W          E L+ A +TFR
Sbjct: 288 TVFEKM-CERDDGTWSAMIKAYEQNEFLMEALSTFR 322



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 103/194 (53%), Gaps = 6/194 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y + G + E+  +FD+M K+N VS +A++ GY Q G+     ++F  M 
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP 232

Query: 80  EIDLFSFGIVLRACAGLAALRLGK-EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
           E +  S+  +L     +  ++ G  E   +         V   +A++  + + G VD A 
Sbjct: 233 ERNEVSWTAML-----VGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAK 287

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +F +M  R+  TW++MI  + QN    EAL  F +M   G +P++ S I +L+ C+ + 
Sbjct: 288 TVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALA 347

Query: 199 LIDRGRKHFASMTK 212
           ++D GR+  A+M +
Sbjct: 348 VLDYGREVHAAMLR 361



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 33/240 (13%)

Query: 32  GKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSF----- 86
            + G ++ +   F+ M  + + S +ALL GY +    ++ + +FR M   DL S+     
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALIS 87

Query: 87  GIVLR------ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
           G+ LR      A A LA++                  V+  ++L+  Y + G +  A ++
Sbjct: 88  GLSLRRQTLPDAAAALASIPFPP-------------SVVSFTSLLRGYVRHGLLADAIRL 134

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F QMP RN +++  ++ G    GR  EA R+FD+M +     D V++  +LS     G I
Sbjct: 135 FQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDR----DVVAWTAMLSGYCQAGRI 190

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              R  F  M K       +  +  M+    + G +  A  L E    R++ S   +L+G
Sbjct: 191 TEARALFDEMPKR-----NVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVG 245



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+EVHA ++      +V   S+L+ MY KCG +D++ RVF     K+ V  ++++ G
Sbjct: 349 LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITG 408

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV----LRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + IF +M    +   GI     L AC+    ++ G+E+       S  + 
Sbjct: 409 YAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRP 468

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
                S +VDL  + G V+ A  +   MPV  + + W +++
Sbjct: 469 GAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM 509


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 129/343 (37%), Positives = 206/343 (60%), Gaps = 13/343 (3%)

Query: 3   KQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDK--------MLKKNSV 53
           K G    A+++ L +   N+V  ++L+  Y   G  DE+  +F +        M++ N V
Sbjct: 318 KHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVV 377

Query: 54  SSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQY 109
           S SA++ G+   G  E  + +FR M+    + +  +   VL  CA LAAL LG+E+H   
Sbjct: 378 SWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHV 437

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           +R     ++++ + L+++Y K G     + +F ++  ++LI+WN+M++G+  +G GE A+
Sbjct: 438 VRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAI 497

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
           R FD M + G +PD V+F+ VLSACSH GL+  GR+ F  M KE+R++P++EHY CMVDL
Sbjct: 498 RTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDL 557

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY 289
           LGRAGLL+EA  ++++     ++ +W  LL +C   +N  VAE  A +I  L  +   SY
Sbjct: 558 LGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSY 617

Query: 290 VLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +LL N+Y A GRW D+ K+R   K  G+KK PG+SWI+   K+
Sbjct: 618 MLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKV 660



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 140/324 (43%), Gaps = 84/324 (25%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + VH  V+ +G   N+ V + L+ MYGK G +D++ +VF++M  ++ VS + ++ GY   
Sbjct: 155 RSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALN 214

Query: 66  GDFESVIRIFREM--------------------------EEIDLF-------------SF 86
            D      +FR M                          E ++LF             + 
Sbjct: 215 YDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEAL 274

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMP 145
            +VL     LAA   GK +H  Y+ + G ++ + ++++L+ LY K G V+ A  +FL++ 
Sbjct: 275 AVVLSVSVDLAAFDEGKVIH-GYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIK 333

Query: 146 VRNLITWNSMIS---------------------------------------GFAQNGRGE 166
            +N+++WN++IS                                       GFA  G+GE
Sbjct: 334 TKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGE 393

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           EAL +F  M     K + V+   VLS C+ +  +  GR+    + +   +   I   N +
Sbjct: 394 EALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSL-MDGNILVGNGL 452

Query: 227 VDLLGRAGLLEEAETL---IENAD 247
           +++  ++G  +E   +   IEN D
Sbjct: 453 INMYTKSGSFKEGNLVFEKIENKD 476



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 111/205 (54%), Gaps = 17/205 (8%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD--------KMLKKNSVSSSA 57
           +++H+++I  G   +  + + +V +Y   GLV ++ RVF+         +L  NS+  + 
Sbjct: 51  QQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRAN 110

Query: 58  LLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +  GYC     E  + I+  M ++    D F+F +V+RACA + + +L + VH   +   
Sbjct: 111 VAHGYC-----EEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMG 165

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              ++ + + L+ +Y K G +D A ++F +M VR+ ++WN+M+SG+A N     A  +F 
Sbjct: 166 FQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFR 225

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMG 198
            M   G +P+ V++  +LS+ +  G
Sbjct: 226 MMGSAGLEPNLVTWTSLLSSHARCG 250



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 6/162 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+H  V+   + GN++V + L++MY K G   E + VF+K+  K+ +S + ++ G
Sbjct: 427 LHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAG 486

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  E+ IR F +M     E D  +F  VL AC+    +  G+E+  + I+    + 
Sbjct: 487 YGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEP 546

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMIS 157
            +   A +VDL  + G +  A ++   MPV  N   W ++++
Sbjct: 547 QMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLN 588



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 10/155 (6%)

Query: 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR---NLITWNSMIS 157
           L +++H Q I     +   + + +V +YA  G V  A ++F   P+    NL+ WNS++ 
Sbjct: 49  LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILR 108

Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG---LIDRGRKHFASMTKEY 214
               +G  EEAL I+  M + G   D  +F  V+ AC+ MG   L      H   M  ++
Sbjct: 109 ANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 168

Query: 215 RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
            +       N ++ + G+ G +++A  + E    R
Sbjct: 169 NLHVG----NELMGMYGKIGRMDDARKVFERMAVR 199


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  260 bits (664), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 207/336 (61%), Gaps = 13/336 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +GKE+H   I  GL  ++ V SSL+DMY KC  V +S RVF  + +++ +S ++++ G
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAG 314

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
             Q G F+  +R FR+M    +    +SF  ++ ACA L  L LGK++H  YI R+G  +
Sbjct: 315 CVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH-GYITRNGFDE 373

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ I S+LVD+YAKCG +  A QIF +M +R++++W +MI G A +G+  +A+ +F+ M 
Sbjct: 374 NIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQME 433

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G K        VL+ACSH GL+D   K+F SMT+++ I P +EHY  + DLLGRAG L
Sbjct: 434 TEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRL 486

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA   I         S+W  LL AC   +N  +AE+VA +I+E+ P+   +Y+LL N+Y
Sbjct: 487 EEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIY 546

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            A  RW +A K R  M+  G++K P  SWIE  +K+
Sbjct: 547 SAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKV 582



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 38/297 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHR------------------- 42
           L  G+ +H  +I +GL  ++   ++L++MY K   ++ES R                   
Sbjct: 122 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSV 181

Query: 43  -------------VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFS 85
                        +F+ M +K+ VS + ++ G  + G +E  +R+ REM     + D F+
Sbjct: 182 RTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFT 241

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              VL   A    +  GKE+H   IR+    D+ + S+L+D+YAKC  V  + ++F  + 
Sbjct: 242 LSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLT 301

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R+ I+WNS+I+G  QNG  +E LR F  M     KP   SF  ++ AC+H+  +  G++
Sbjct: 302 ERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ 361

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
               +T+       I   + +VD+  + G +  A+ + +    R D   W  ++  C
Sbjct: 362 LHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGC 416



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 37/238 (15%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           Q +++HA+V+      ++   S L+ +Y    L+ +S R+F+ +    +++  ++++ Y 
Sbjct: 24  QAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYT 82

Query: 64  QTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             G     +  F  M    L+     F  VL++CA L  L LG+ +H   IR     D+ 
Sbjct: 83  SHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLY 142

Query: 120 IESALVDLYAKCGCV--------------------------------DFAHQIFLQMPVR 147
             +AL+++Y+K   +                                D   +IF  MP +
Sbjct: 143 TGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEK 202

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +L++WN++I+G A+NG  EE LR+  +M     KPD  +   VL   +    I RG++
Sbjct: 203 DLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKE 260


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  260 bits (664), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 135/332 (40%), Positives = 205/332 (61%), Gaps = 4/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +   +   G+  NV V ++LVD YGKCG ++ +  VFD ML+KN VS S+++QG
Sbjct: 225 LRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQG 284

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  + +F +M     + D ++   VL +CA L AL LG              +
Sbjct: 285 YASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDN 344

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ +AL+D+YAKCG +D A ++F  M  ++ + WN+ ISG A +G  ++AL +F  M +
Sbjct: 345 SVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEK 404

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD  +F+G+L AC+H GL++ GR++F SM   + + P+IEHY CMVDLLGRAG L+
Sbjct: 405 SGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLD 464

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI++     ++ +W  LLG C   R+  + E V KK++ L+P    +YVLL N+Y 
Sbjct: 465 EAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYA 524

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           A  +W +A KIR++M   GVKK+PG SWIE +
Sbjct: 525 ASHKWEEAAKIRSIMSERGVKKIPGYSWIEVD 556



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 119/204 (58%), Gaps = 6/204 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H+ V+  G   +  V+ SL+++Y KCG +D + +VFD +  KN  S +A + GY  
Sbjct: 127 GVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVG 186

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVI 119
            G     I +FR + E+    D FS   VL AC     LR G+ +  +YI  +G  ++V 
Sbjct: 187 VGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWID-EYITENGMVRNVF 245

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +ALVD Y KCG ++ A  +F  M  +N+++W+SMI G+A NG  +EAL +F  M   G
Sbjct: 246 VATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEG 305

Query: 180 TKPDHVSFIGVLSACSHMGLIDRG 203
            KPD  + +GVL +C+ +G ++ G
Sbjct: 306 LKPDCYAMVGVLCSCARLGALELG 329



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 146/291 (50%), Gaps = 8/291 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK  K +HA ++ LGL  +  + + ++      G  + S R+ D+  + N    + +++G
Sbjct: 23  LKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRG 82

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
                 F+  I I+  M +     D F+F  VL+ACA +    LG ++H   + ++GC+ 
Sbjct: 83  LVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMH-SLVVKAGCEA 141

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  ++ +L++LY KCG +D A ++F  +P +N  +W + ISG+   G+  EA+ +F  + 
Sbjct: 142 DAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLL 201

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E G +PD  S + VLSAC   G +  G      +T+   ++  +     +VD  G+ G +
Sbjct: 202 EMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVR-NVFVATALVDFYGKCGNM 260

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCH 286
           E A ++ +    ++  S   ++ G  +        +   K + E LKPDC+
Sbjct: 261 ERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCY 311



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 92/205 (44%), Gaps = 10/205 (4%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           S GI  R   G + L+  K +H   +R    +D  + + ++      G  +++ +I  Q 
Sbjct: 9   SAGIKNRLIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQT 68

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
              N+  +N+MI G   N   +E++ I+  M + G  PD  +F  VL AC+ +   + G 
Sbjct: 69  KEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGV 128

Query: 205 KHFASMTK---EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           K  + + K   E     KI     +++L  + G ++ A  + ++   ++ +S W   +  
Sbjct: 129 KMHSLVVKAGCEADAFVKIS----LINLYTKCGFIDNAFKVFDDIPDKNFAS-WTATISG 183

Query: 262 CTTFRNAHVAERVAKKIME--LKPD 284
                    A  + ++++E  L+PD
Sbjct: 184 YVGVGKCREAIDMFRRLLEMGLRPD 208


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  260 bits (664), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 132/320 (41%), Positives = 199/320 (62%), Gaps = 6/320 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N  V S+L+ MYGKCG +  + RVFD+M+KK+ V+ +A++ GY Q G  +  I +F  M 
Sbjct: 261 NSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMR 320

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           E     D  +   VL ACA + AL  GK +      R    D+ + +AL+D+YAKCG +D
Sbjct: 321 ESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLD 380

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE--GGTKPDHVSFIGVLSA 193
            A ++F  MP +N ++WN+MIS  A +GR +E+L +F  M++  G  +P+ +SFIGVLSA
Sbjct: 381 DALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSA 440

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C H GL+D GR+ F  M+  + + PKIEH++CMVDLL RAG + EA   IE    + D  
Sbjct: 441 CVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEV 500

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           +   LLGAC   RN  V+ERV   ++E++P    +Y++   ++  + RW+D+ ++R LM+
Sbjct: 501 VLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMR 560

Query: 314 YSGVKKMPGKSWIEANSKLN 333
             GV K PG SWIE  ++++
Sbjct: 561 QRGVTKTPGCSWIEIENQVH 580



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 147/264 (55%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+  H+ V+  GLC +  V  SL+ MY +CG +  + RVFD++ +K+ VS ++++ G
Sbjct: 142 LNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISG 201

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G     + +F EM     E D  +   +L AC  L  L LG  +    +      +
Sbjct: 202 YSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLN 261

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SAL+ +Y KCG +  A ++F +M  ++++TWN+MI+G+AQNG  +EA+ +F  M E
Sbjct: 262 SFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRE 321

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD ++ +GVLSAC+ +G +D G K   +   E  ++  I     ++D+  + G L+
Sbjct: 322 SGVNPDKITLVGVLSACASIGALDFG-KWLDTYASERGLQNDIYVSTALIDMYAKCGSLD 380

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           +A  + E+   +++ S W  ++ A
Sbjct: 381 DALRVFEDMPQKNEVS-WNAMISA 403



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 92/166 (55%), Gaps = 5/166 (3%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGD-FESVIRIFREMEEIDL----FSFGIVLRACAGLA 97
           +F ++   N  + + +++G   T   F   I  + +M++  +    F++  V  ACA L 
Sbjct: 81  LFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLL 140

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
            L  G+  H   ++   C D  +  +L+ +Y++CG +  A ++F ++  ++L++WNSMIS
Sbjct: 141 VLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMIS 200

Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           G+++ G   +A+ +F +M + G +PD ++ + +L AC  +G +  G
Sbjct: 201 GYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLG 246



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 7/151 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +       GL  ++ V ++L+DMY KCG +D++ RVF+ M +KN VS +A++  
Sbjct: 344 LDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISA 403

Query: 62  YCQTGDFESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
               G  +  + +F+ M +       +  SF  VL AC     +  G+++        G 
Sbjct: 404 LAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGL 463

Query: 116 KDVII-ESALVDLYAKCGCVDFAHQIFLQMP 145
              I   S +VDL A+ G V  A     +MP
Sbjct: 464 VPKIEHHSCMVDLLARAGHVHEAWDFIEKMP 494


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  260 bits (664), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 205/334 (61%), Gaps = 4/334 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H  V+         VES+L+DMY KCG +D SH +F KM +K+ V+ ++++  
Sbjct: 460 LPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISS 519

Query: 62  YCQTGDFESVIRIFREM--EEIDLFSFGI--VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +  + +FR+M  E I   +  I   L ACA L A+  GKE+H   I+     D
Sbjct: 520 FSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKAD 579

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  ESAL+D+YAKCG ++ A ++F  MP +N ++WNS+IS +  +G  +E++ +   M E
Sbjct: 580 IFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQE 639

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPDHV+F+ ++SAC+H GL++ G + F  MTK+Y I P++EH+ CMVDL  R+G L+
Sbjct: 640 EGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLD 699

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A   I +   + D+ +W  LL AC   RN  +A+  ++++ +L P     YVL+ N+  
Sbjct: 700 KAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINA 759

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
             GRW+   K+R LMK + + K+PG SW++ N+ 
Sbjct: 760 VAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNS 793



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 150/264 (56%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LKQGKEVH  ++   +  +V + S+LVD+Y KC  V  +  ++D     + V  S ++ G
Sbjct: 359 LKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISG 418

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  E  +++FR + E     +  +   VL  CA +AAL LG+++H   +R +  + 
Sbjct: 419 YVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERK 478

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +ESAL+D+YAKCG +D +H IFL+M  ++ +TWNSMIS F+QNG+ +EAL +F  M  
Sbjct: 479 CYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCM 538

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K ++++    LSAC+ +  I  G K    +T +  IK  I   + ++D+  + G LE
Sbjct: 539 EGIKYNNITISAALSACASLPAIYYG-KEIHGVTIKGPIKADIFAESALIDMYAKCGNLE 597

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A  + E    +++ S W  ++ A
Sbjct: 598 LALRVFEFMPDKNEVS-WNSIISA 620



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 111/205 (54%), Gaps = 4/205 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VH     +GL  +V V S+LV MY   GL+  +   FD + +++ V  + ++ G  +
Sbjct: 160 GRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIK 219

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD +  +R+FR M     E +  +    L  CA  A L  G ++H   ++     +V +
Sbjct: 220 AGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAV 279

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L+ +YAKC C+D A ++F  MP  +L+TWN MISG  QNG   EA  +F DM   G 
Sbjct: 280 ANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGA 339

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK 205
           +PD ++ + +L A + +  + +G++
Sbjct: 340 RPDSITLVSLLPALTDLNGLKQGKE 364



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 7/241 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H+  +  GL   V V ++L+ MY KC  +D++ R+F+ M + + V+ + ++ G
Sbjct: 258 LLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISG 317

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G F     +F +M+      D  +   +L A   L  L+ GKEVH   +R     D
Sbjct: 318 CVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMD 377

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SALVD+Y KC  V  A  ++      +++  ++MISG+  NG  EEAL++F  + E
Sbjct: 378 VFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLE 437

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              KP+ V+   VL  C+ M  +  G++ H   +   Y  K  +E  + ++D+  + G L
Sbjct: 438 QCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVE--SALMDMYAKCGRL 495

Query: 237 E 237
           +
Sbjct: 496 D 496



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 125/275 (45%), Gaps = 16/275 (5%)

Query: 2   LKQGKEVHAKVITLGLCGN---VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS--- 55
           L  G ++HA+ +  G   +   + + + L+ MY       ++  VF  + +  + SS   
Sbjct: 48  LPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPW 107

Query: 56  SALLQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQY 109
           + L++G+   G     +  + +M         D  +   V+++CA L A+ LG+ VH   
Sbjct: 108 NWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTA 167

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
                  DV + SALV +YA  G +  A   F  +P R+ + WN M+ G  + G  + A+
Sbjct: 168 RAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAV 227

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSAC-SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           R+F +M   G +P+  +    LS C +   L+   + H  S+  +  ++P++   N ++ 
Sbjct: 228 RLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLH--SLAVKCGLEPEVAVANTLLA 285

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           +  +   L++A  L E    + D   W  ++  C 
Sbjct: 286 MYAKCQCLDDAWRLFELMP-QDDLVTWNGMISGCV 319



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 10/182 (5%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKD---VIIESALVDLYAKCGCVDFAHQIFLQMP 145
           VLR C     L LG ++H + +      D   + + + L+ +Y        A  +F  +P
Sbjct: 38  VLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 146 ---VRNLITWNSMISGFAQNGRGEEALRIFDDM--TEGGTKPDHVSFIGVLSACSHMGLI 200
                + + WN +I GF   G+   A+  +  M        PD  +   V+ +C+ +G +
Sbjct: 98  RAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAM 157

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             GR       +   +   +   + +V +   AGLL  A    +    R D  LW V++ 
Sbjct: 158 SLGRL-VHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPER-DCVLWNVMMD 215

Query: 261 AC 262
            C
Sbjct: 216 GC 217


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  259 bits (663), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 132/338 (39%), Positives = 203/338 (60%), Gaps = 5/338 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +L+ GK +H  ++   +  ++ ++ SL+D Y KCG V  +  +F  + K   VS + ++ 
Sbjct: 323 QLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMIS 382

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+   G+    + I+  M+E     D  +F   L AC+ LAAL  G+E+H   I      
Sbjct: 383 GHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEA 442

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + I+  AL+D+YAKCG VD A ++F Q+P R+L++W SMI  +  +G+  EALR+FD+M 
Sbjct: 443 NEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQ 502

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +   + D V+F+ VLSACSH GL+D G  +F  M  +Y IKP IEHY+C++DLLGRAG L
Sbjct: 503 KLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRL 562

Query: 237 EEA-ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            EA E L  + + R D  L   L  AC    N  +  ++ K ++E+ PD   +Y+LL N+
Sbjct: 563 HEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDDPSTYILLSNM 622

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           Y +V +W++  K+R  MK  G+KK PG SWIE N +++
Sbjct: 623 YASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQRIH 660



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 151/286 (52%), Gaps = 8/286 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GKEVH ++I   +  +  V S+LVDMYGKCG ++ +  VF+K+ +KN+++ +A++ G
Sbjct: 223 LERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITG 282

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   GD  S I +   M +      L +   ++ A +    LR GK +H   +R     D
Sbjct: 283 YSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVD 342

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I+ +L+D Y KCG V  A  IF  +    +++WN MISG    G   +AL I+D+M E
Sbjct: 343 IFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKE 402

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              KPD ++F   LSACS +  +D+GR+ H+  +  +      +     ++D+  + G +
Sbjct: 403 HHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIV--MGALLDMYAKCGDV 460

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
           +EA  L      R D   W  ++ A  +   A  A R+  ++ +L 
Sbjct: 461 DEARKLFHQLPKR-DLVSWTSMIFAYGSHGQASEALRLFDEMQKLN 505



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 149/290 (51%), Gaps = 8/290 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+  G+ +H  ++  GL  +V V SSL++MY KC    ++ ++FD+  +++    +A++ 
Sbjct: 121 RVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVIS 180

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y + G  E  ++ F +M+E+       +F +V+ +C  L  L  GKEVH + I R    
Sbjct: 181 CYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILL 240

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + SALVD+Y KCGC++ A ++F ++P +N ITWN+MI+G++  G     + +   M 
Sbjct: 241 DAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMN 300

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + GTKP  ++   ++ A S    +  G+     + +  RI   I     ++D   + G +
Sbjct: 301 DEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRN-RIDVDIFIDVSLIDFYFKCGYV 359

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
             AET+      +++   W V++       N   A  +   + E  +KPD
Sbjct: 360 SSAETIFRTIS-KNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPD 408



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 141/264 (53%), Gaps = 8/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SALLQ 60
           LKQGK +H ++ + G   N+V+  SL+  Y  C     +  VF        VS  +ALL 
Sbjct: 19  LKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTNDCPLDVSLWNALLS 78

Query: 61  GYCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            Y     F   +++F ++        D +++ +VL+AC GL  +  G+ +H   ++    
Sbjct: 79  AYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLI 138

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + S+L+++YAKC     A ++F + P R++  WN++IS + ++G+ E AL+ FD M
Sbjct: 139 WDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKM 198

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E G +P+ V+F  V+S+C+ +  ++RG++    +  E RI       + +VD+ G+ G 
Sbjct: 199 KELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELI-ERRILLDAFVLSALVDMYGKCGC 257

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           LE A+ + E    R ++  W  ++
Sbjct: 258 LEMAKEVFEKIP-RKNAITWNAMI 280


>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
 gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
          Length = 581

 Score =  259 bits (663), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 134/334 (40%), Positives = 207/334 (61%), Gaps = 5/334 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++K G+  H+ V+  G   N  + SSL+ MY KCGLV+++ +VF  M ++N V  ++++ 
Sbjct: 211 KVKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMIS 270

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q G F+  + +FR+M+    ++D  +   V+ +CA + AL LG+ VH         K
Sbjct: 271 GYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGK 330

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ ++++L+D+Y+KCG ++ AH+IF  +  R++ +W +MI GF  NG   EAL +F  M 
Sbjct: 331 ELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQME 390

Query: 177 -EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            EG   P+ V+F+GVL++CSH GL+++G  +F  M+  Y++ P+IEHY CMVDLLGRA L
Sbjct: 391 GEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHYGCMVDLLGRAKL 450

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L EAE  I+N     D  +W  LL AC       +AE VA++I+EL+P     +VLL NV
Sbjct: 451 LTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPKKCAGHVLLSNV 510

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           Y    RW D  ++RT M  S + K PG S+IE +
Sbjct: 511 YATTSRWVDVNELRTSMDNSRMSKQPGCSFIEVD 544



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 130/249 (52%), Gaps = 17/249 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK--NSVSSSALLQGY 62
           G ++H+  + LGL  +  V +SL++MY  C     + +V D   +   ++VS + ++ GY
Sbjct: 112 GAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVLDSAPQGACDTVSWNTIISGY 171

Query: 63  CQTGDFESVIRIFREM--EEIDLFSFGIV--LRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            + G     ++ F +M  E++ L    ++  L A A    +++G+  H   +      + 
Sbjct: 172 LRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVVVNGAGINC 231

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + S+L+ +YAKCG V+ A ++F  M  RN++ W SMISG+ Q G+ +EA+ +F DM   
Sbjct: 232 YMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQIT 291

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFA-----SMTKEYRIKPKIEHYNCMVDLLGRA 233
           G K D  +   V+S+C+ MG +D GR   A      + KE  +K      N ++D+  + 
Sbjct: 292 GMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVK------NSLIDMYSKC 345

Query: 234 GLLEEAETL 242
           G + +A  +
Sbjct: 346 GDINKAHEI 354


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  259 bits (663), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 129/343 (37%), Positives = 206/343 (60%), Gaps = 13/343 (3%)

Query: 3   KQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDK--------MLKKNSV 53
           K G    A+++ L +   N+V  ++L+  Y   G  DE+  +F +        M++ N V
Sbjct: 318 KHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVV 377

Query: 54  SSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQY 109
           S SA++ G+   G  E  + +FR M+    + +  +   VL  CA LAAL LG+E+H   
Sbjct: 378 SWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHV 437

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           +R     ++++ + L+++Y K G     + +F ++  ++LI+WN+M++G+  +G GE A+
Sbjct: 438 VRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAI 497

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
           R FD M + G +PD V+F+ VLSACSH GL+  GR+ F  M KE+R++P++EHY CMVDL
Sbjct: 498 RTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDL 557

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY 289
           LGRAGLL+EA  ++++     ++ +W  LL +C   +N  VAE  A +I  L  +   SY
Sbjct: 558 LGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSY 617

Query: 290 VLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +LL N+Y A GRW D+ K+R   K  G+KK PG+SWI+   K+
Sbjct: 618 MLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKV 660



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 140/324 (43%), Gaps = 84/324 (25%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + VH  V+ +G   N+ V + L+ MYGK G +D++ +VF++M  ++ VS + ++ GY   
Sbjct: 155 RSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALN 214

Query: 66  GDFESVIRIFREM--------------------------EEIDLF-------------SF 86
            D      +FR M                          E ++LF             + 
Sbjct: 215 YDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEAL 274

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMP 145
            +VL     LAA   GK +H  Y+ + G ++ + ++++L+ LY K G V+ A  +FL++ 
Sbjct: 275 AVVLSVSVDLAAFDEGKVIH-GYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIK 333

Query: 146 VRNLITWNSMIS---------------------------------------GFAQNGRGE 166
            +N+++WN++IS                                       GFA  G+GE
Sbjct: 334 TKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGE 393

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           EAL +F  M     K + V+   VLS C+ +  +  GR+    + +   +   I   N +
Sbjct: 394 EALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSL-MDGNILVGNGL 452

Query: 227 VDLLGRAGLLEEAETL---IENAD 247
           +++  ++G  +E   +   IEN D
Sbjct: 453 INMYTKSGSFKEGNLVFEKIENKD 476



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 111/205 (54%), Gaps = 17/205 (8%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD--------KMLKKNSVSSSA 57
           +++H+++I  G   +  + + +V +Y   GLV ++ RVF+         +L  NS+  + 
Sbjct: 51  QQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRAN 110

Query: 58  LLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +  GYC     E  + I+  M ++    D F+F +V+RACA + + +L + VH   +   
Sbjct: 111 VAHGYC-----EEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMG 165

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              ++ + + L+ +Y K G +D A ++F +M VR+ ++WN+M+SG+A N     A  +F 
Sbjct: 166 FQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFR 225

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMG 198
            M   G +P+ V++  +LS+ +  G
Sbjct: 226 MMGSAGLEPNLVTWTSLLSSHARCG 250



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 6/162 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+H  V+   + GN++V + L++MY K G   E + VF+K+  K+ +S + ++ G
Sbjct: 427 LHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAG 486

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  E+ IR F +M     E D  +F  VL AC+    +  G+E+  + I+    + 
Sbjct: 487 YGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEP 546

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMIS 157
            +   A +VDL  + G +  A ++   MPV  N   W ++++
Sbjct: 547 QMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLN 588



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 10/155 (6%)

Query: 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR---NLITWNSMIS 157
           L +++H Q I     +   + + +V +YA  G V  A ++F   P+    NL+ WNS++ 
Sbjct: 49  LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILR 108

Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG---LIDRGRKHFASMTKEY 214
               +G  EEAL I+  M + G   D  +F  V+ AC+ MG   L      H   M  ++
Sbjct: 109 ANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 168

Query: 215 RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
            +       N ++ + G+ G +++A  + E    R
Sbjct: 169 NLHVG----NELMGMYGKIGRMDDARKVFERMAVR 199


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  259 bits (663), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 130/311 (41%), Positives = 193/311 (62%), Gaps = 4/311 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV+  ++++  + + G V+E+ ++F  M + N VS +A++ GY Q G  E+ +++F +M+
Sbjct: 321 NVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQ 380

Query: 80  EIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
            +D+     +F IVL ACA LA L  G E H   IR     DV++ + LV +YAKCG ++
Sbjct: 381 MVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIE 440

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A ++F +M  ++  + ++MI G+A NG  +E+L +F+ M   G KPD V+F+GVLSAC 
Sbjct: 441 DARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACC 500

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H GL+D GR++F  MT+ Y I P +EHY CM+DLLGRAG  +EA  LI     + D+ +W
Sbjct: 501 HAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMW 560

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LL AC T  N  + E+VA+ ++ L P     YVLL N+Y A GRW+D   +R  MK  
Sbjct: 561 GSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDR 620

Query: 316 GVKKMPGKSWI 326
            VKK  G SWI
Sbjct: 621 KVKKKLGCSWI 631



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 171/324 (52%), Gaps = 23/324 (7%)

Query: 2   LKQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L   K +HA +I     C ++ + + LV +Y K G + E+ RVFD+M  KN VS +A++ 
Sbjct: 80  LPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIA 139

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y +    +  +  F EM+++ +    F+F  +L AC  L  L    E H + ++     
Sbjct: 140 AYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVL---GEFHDEIVKGGFES 196

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V + + LVD+YAK GC++FA ++F +MP R++++WN+MI+G+ QNG  E+AL++F ++ 
Sbjct: 197 NVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEI- 255

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               K D +++  +++  +  G ++   + F  M ++  +      +N M+    + G +
Sbjct: 256 ---PKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVS-----WNTMIAGYVQNGSV 307

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH-LSYVLLDNV 295
           +EA  L +    R+  S   V+ G     +N  V E  A K+ +  P+C+ +S+  +   
Sbjct: 308 KEAFKLFQIMPERNVISWNAVISGFA---QNGQVEE--ALKLFKTMPECNVVSWNAMIAG 362

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKK 319
           Y   G+  +A K+   M+   +K 
Sbjct: 363 YSQNGQAENALKLFGQMQMVDMKP 386



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 149/281 (53%), Gaps = 28/281 (9%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E H +++  G   NV V + LVDMY K G ++ +  +FDKM +++ VS +A++ GY Q G
Sbjct: 184 EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNG 243

Query: 67  DFESVIRIFREMEEIDLFSFGIVLRACAGLA----ALRLGKEVHCQ-----------YIR 111
             E  +++F+E+ + D+ ++  ++   A       A+ L +++  Q           Y++
Sbjct: 244 LIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQ 303

Query: 112 RSGCK------------DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF 159
               K            +VI  +A++  +A+ G V+ A ++F  MP  N+++WN+MI+G+
Sbjct: 304 NGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGY 363

Query: 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219
           +QNG+ E AL++F  M     KP+  +F  VL AC+ + ++++G +    + +    +  
Sbjct: 364 SQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRS-GFQSD 422

Query: 220 IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +   N +V +  + G +E+A  + +    +  +SL  +++G
Sbjct: 423 VLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVG 463



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 137/299 (45%), Gaps = 44/299 (14%)

Query: 55  SSALLQGYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYI 110
           +  L++  C+ G     + I ++M E  ++    ++  +L+ C    +L   K +H   I
Sbjct: 32  NDGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMI 91

Query: 111 RRS-GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           +    C+D+ + + LV +Y K G +  A ++F +MPV+N+++W +MI+ +A++  G+EAL
Sbjct: 92  QTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEAL 151

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHM-----------------------GLID----R 202
             F +M + G +P+H +F  +L AC+ +                       GL+D    R
Sbjct: 152 GFFYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKR 211

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA- 261
           G   FA    +   +  +  +N M+    + GL+E+A  L +    R D   W  ++   
Sbjct: 212 GCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKR-DVITWNTMMAGY 270

Query: 262 --CTTFRNAHVAERVAKKIMELKPDCHL-SYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
             C    N       A ++ E  P+ +L S+  +   Y   G   +AFK+  +M    V
Sbjct: 271 AQCGDVEN-------AVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNV 322



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG E H  VI  G   +V+V ++LV MY KCG ++++ +VFD+M +++S S SA++ G
Sbjct: 404 LEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVG 463

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  + +F +M+    + D  +F  VL AC     +  G++      R      
Sbjct: 464 YAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITP 523

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            +     ++DL  + GC D A+ +  +MP++ +   W S++S 
Sbjct: 524 AMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSA 566


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  259 bits (663), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 210/367 (57%), Gaps = 37/367 (10%)

Query: 2   LKQGKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKM------------- 47
           L+ GK ++ K I  G+   N+++E+ L+DM+  CG +DE+  VFD M             
Sbjct: 224 LEGGKHIY-KYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVT 282

Query: 48  ------------------LKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFS 85
                              +++ VS +A++ GY +   F   + +FREM+    + D F+
Sbjct: 283 GFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFT 342

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              +L ACA L AL LG+ V     + S   D  + +AL+D+Y KCG V  A ++F +M 
Sbjct: 343 MVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMH 402

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            ++  TW +MI G A NG GEEAL +F +M E    PD +++IGVL AC+H G++++G+ 
Sbjct: 403 HKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQS 462

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F SMT ++ IKP + HY CMVDLLGRAG LEEA  +I N   + +S +W  LLGAC   
Sbjct: 463 FFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVH 522

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           +N  +AE  AK+I+EL+P+    YVLL N+Y A  RW +  ++R LM   G+KK PG S 
Sbjct: 523 KNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSL 582

Query: 326 IEANSKL 332
           +E N  +
Sbjct: 583 MELNGNV 589



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 145/310 (46%), Gaps = 41/310 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +    +  G   N+ V+ + + M+  C LVD + +VFD       V+ + +L G
Sbjct: 123 LQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSG 182

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           Y +   F+    +F EME+     +  +  ++L AC+ L  L  GK ++ +YI      +
Sbjct: 183 YNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIY-KYINGGIVER 241

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG------------- 163
           ++I+E+ L+D++A CG +D A  +F  M  R++I+W S+++GFA  G             
Sbjct: 242 NLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIP 301

Query: 164 ------------------RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
                             R  EAL +F +M     KPD  + + +L+AC+H+G ++ G +
Sbjct: 302 ERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG-E 360

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
              +   +  IK      N ++D+  + G + +A+ + +    + D   W  ++      
Sbjct: 361 WVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHK-DKFTWTAMIVGLAI- 418

Query: 266 RNAHVAERVA 275
            N H  E +A
Sbjct: 419 -NGHGEEALA 427



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 157/323 (48%), Gaps = 11/323 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM--YGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           + Q K++H+  I +GL  + + +  ++      + G +  + +VFD + +      + ++
Sbjct: 20  MYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMI 79

Query: 60  QGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           +GY +    ++ + ++  M     + D F+F  +L+      AL+ GK +    ++    
Sbjct: 80  KGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFD 139

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            ++ ++ A + +++ C  VD A ++F       ++TWN M+SG+ +  + +++  +F +M
Sbjct: 140 SNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEM 199

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G  P+ V+ + +LSACS +  ++ G KH         ++  +   N ++D+    G 
Sbjct: 200 EKRGVSPNSVTLVLMLSACSKLKDLE-GGKHIYKYINGGIVERNLILENVLIDMFAACGE 258

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           ++EA+++ +N   R D   W  ++   T F N    +   K   ++    ++S+  + + 
Sbjct: 259 MDEAQSVFDNMKNR-DVISWTSIV---TGFANIGQIDLARKYFDQIPERDYVSWTAMIDG 314

Query: 296 YRAVGRWNDAFKIRTLMKYSGVK 318
           Y  + R+ +A  +   M+ S VK
Sbjct: 315 YLRMNRFIEALALFREMQMSNVK 337


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 217/377 (57%), Gaps = 50/377 (13%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVF---------------- 44
           RL++G++VH   +  GL  +  V S++V MY  CG+++++HR+F                
Sbjct: 127 RLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKK 186

Query: 45  ------------------------------DKMLKKNSVSSSALLQGYCQTGDFESVIRI 74
                                         D+M +++ VS + ++ GY Q+G F+  + +
Sbjct: 187 RRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEV 246

Query: 75  FREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
           FREM+  ++     +   VL A + L AL LGK VH   +R +   D ++ SAL+D+YAK
Sbjct: 247 FREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAK 306

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
           CG ++ A Q+F  +P RN++TW+++I+G A +GR ++ L  F+DM   G  P  V++IG+
Sbjct: 307 CGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGL 366

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
           LSACSH GL++ GR  F  M +   ++P+IEHY CMVDLLGRAGLLEE+E LI N   + 
Sbjct: 367 LSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKP 426

Query: 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310
           D  +W+ LLGAC    N  + +RVA+ +MEL P    SYV L N+Y ++G W    K+R 
Sbjct: 427 DDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRL 486

Query: 311 LMKYSGVKKMPGKSWIE 327
           +MK   V+K PG SWIE
Sbjct: 487 MMKEMDVRKDPGCSWIE 503



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 136/309 (44%), Gaps = 56/309 (18%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGL--VDESHRVFDKMLKKNSVSSSALLQGYC 63
           K++HA++I      + +  + L+          +D + ++F  M + N  S + L++   
Sbjct: 28  KQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALS 87

Query: 64  QTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           ++ D    + +F EM E      + F+F  V +AC     LR G++VH   ++     D 
Sbjct: 88  ESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDE 147

Query: 119 IIESALVDLYAKCGCVDFAHQIFL------------------------------------ 142
            + S +V +Y  CG ++ AH++F                                     
Sbjct: 148 FVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIG 207

Query: 143 ----------QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
                     +MP R++++WN MI+G+AQ+G  +EA+ +F +M      P++V+ + VL 
Sbjct: 208 ELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLP 267

Query: 193 ACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           A S +G ++ G+  H  ++     +   +   + ++D+  + G +E+A  + E    R+ 
Sbjct: 268 AMSRLGALELGKWVHLYAVRNNIGVDDVLG--SALIDMYAKCGSIEKALQVFEGLPKRNV 325

Query: 252 SSLWEVLLG 260
            +   ++ G
Sbjct: 326 VTWSTIIAG 334


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/333 (38%), Positives = 203/333 (60%), Gaps = 3/333 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +H  V+  GL  +  V +SLVDMY KC +V+++ R+F++ML K+ V+ + ++  
Sbjct: 117 LQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGA 176

Query: 62  YCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y     +ES++   R  EE    D  +   V+ ACA L A+   +  +   +R     DV
Sbjct: 177 YADCNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDV 236

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           I+ +A++D+YAKCG V+ A ++F +M  +N+I+W++MI+ +  +GRG++A+ +F  M   
Sbjct: 237 ILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSC 296

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
              P+ V+F+ +L ACSH GLI+ G + F SM +E+ ++P ++HY CMVDLLGRAG L+E
Sbjct: 297 AILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDE 356

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A  LIE      D  LW  LLGAC       +AE+ A  ++EL+P     YVLL N+Y  
Sbjct: 357 ALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAK 416

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
            G+W    K R +M    +KK+PG +WIE ++K
Sbjct: 417 AGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNK 449



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 140/264 (53%), Gaps = 15/264 (5%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++VHA V+  G   ++V+ + L+  Y +   +D+++ +FD +  ++S + S ++ G+ + 
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 66  GDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           GD       FRE+       D ++   V+R C     L++G+ +H   ++     D  + 
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVC 139

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++LVD+YAKC  V+ A ++F +M  ++L+TW  MI  +A +    E+L +FD M E G  
Sbjct: 140 ASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMREEGVV 198

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP----KIEHYNCMVDLLGRAGLLE 237
           PD V+ + V++AC+ +G + R R  FA+   +Y ++      +     M+D+  + G +E
Sbjct: 199 PDKVAMVTVVNACAKLGAMHRAR--FAN---DYIVRNGFSLDVILGTAMIDMYAKCGSVE 253

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A  + +    ++  S W  ++ A
Sbjct: 254 SAREVFDRMKEKNVIS-WSAMIAA 276


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/331 (39%), Positives = 207/331 (62%), Gaps = 6/331 (1%)

Query: 2   LKQGKEVHAKVIT-LGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           LK G+ +H  ++  + L   V +E++L+++Y KCG +D + ++FD++ +KN+V  ++L+ 
Sbjct: 223 LKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLIC 282

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GYCQ G    VI + REM     + D F+   VL ACA + A  LG  VH ++  + G  
Sbjct: 283 GYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVH-RFAEKKGIW 341

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV I +AL+D+YAKCG +  A ++F QM  RN+ TWN+++SG+A +G+ E A+ +F +M 
Sbjct: 342 DVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMR 401

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E G +PD ++F+ VL AC+H GL++ G+++F  M + Y+I P++EHY CMVDLLGRAGLL
Sbjct: 402 ESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLL 461

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA  LI+      +  +W  LL AC+   N  + E  A  +++L      SYV+L N+Y
Sbjct: 462 QEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLY 521

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            +  R+N    +R +M   G+ K  G S IE
Sbjct: 522 ASAQRFNRVKAVREMMVEKGICKSHGCSMIE 552



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 144/291 (49%), Gaps = 9/291 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++Q K++HAK I   L     + + +++ +     +D + +VF++  + +    +A+++ 
Sbjct: 19  IQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRA 78

Query: 62  YCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y  +      I I+ +M        D +++  V +ACA   A+  GKEVH   +R     
Sbjct: 79  YSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYEL 138

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  ++S+L++ Y  CG +  A Q+F +   ++++ WN++I+G+A+ G   ++  +F +M 
Sbjct: 139 DGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMV 198

Query: 177 E-GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           E    +P+  + +G++ AC     +  GR     M K+  ++  ++    +++L  + G 
Sbjct: 199 EVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGY 258

Query: 236 LEEAETLIENADCRHDSSLWEVLL-GACTTFRNAHVAERVAK-KIMELKPD 284
           L+ A  L +      ++ +W  L+ G C       V E + +  +  LKPD
Sbjct: 259 LDGARKLFDEIP-EKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPD 308


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 213/344 (61%), Gaps = 16/344 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             +GK+VH +++  G  G+V V + L+ +YG CG +D + +VFD+M +++ VS ++++  
Sbjct: 167 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 226

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-- 116
             + G+++S +++FREM+   E D ++   VL ACAGL +L LG   H   +R+      
Sbjct: 227 LVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 286

Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV+++++L+++Y KCG +  A Q+F  M  R+L +WN+MI GFA +GR EEA+  FD M
Sbjct: 287 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 346

Query: 176 TEG--GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            +     +P+ V+F+G+L AC+H G +++GR++F  M ++Y I+P +EHY C+VDL+ RA
Sbjct: 347 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 406

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGA-CTTFRNAHVAERVAKKIMELKPD-------C 285
           G + EA  ++ +   + D+ +W  LL A C    +  ++E +A+ I+  K D       C
Sbjct: 407 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 466

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
             +YVLL  VY +  RWND   +R LM   G++K PG S IE N
Sbjct: 467 SGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEIN 510



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 29/304 (9%)

Query: 2   LKQGKEVHAKVI---------TLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKN 51
           + Q K++HA  +         TL L G ++ + SS  D       V+ + RVFD +   +
Sbjct: 61  MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSD-------VNYAFRVFDSIENHS 113

Query: 52  SVSSSALLQGYCQ-TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEV 105
           S   + L++         E    ++R+M E      D  +F  VL+ACA +     GK+V
Sbjct: 114 SFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQV 173

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
           HCQ ++     DV + + L+ LY  CGC+D A ++F +MP R+L++WNSMI    + G  
Sbjct: 174 HCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEY 233

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-- 223
           + AL++F +M +   +PD  +   VLSAC+ +G +  G    A + ++  +   ++    
Sbjct: 234 DSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVK 292

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA---ERVAKKIME 280
           N ++++  + G L  AE + +    R  +S   ++LG  T  R        +R+  K   
Sbjct: 293 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 352

Query: 281 LKPD 284
           ++P+
Sbjct: 353 VRPN 356


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 136/330 (41%), Positives = 204/330 (61%), Gaps = 6/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+HA++I +G   ++ V ++L DMY KCG ++ +  VF+  ++ + VS + L+ G
Sbjct: 459 LNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISVR-DEVSYNILIIG 517

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +T D    +R+F EM  +    D+ SF  V+ ACA LA +R GKE+H   +R+     
Sbjct: 518 YSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTH 577

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++L+DLY +CG +D A ++F  +  +++ +WN+MI G+   G  + A+ +F+ M E
Sbjct: 578 LFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKE 637

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + D VSF+ VLSACSH GLI++GRK+F  M  +  I+P   HY CMVDLLGRAGL+E
Sbjct: 638 DGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMC-DLNIEPTHTHYACMVDLLGRAGLME 696

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI       D+++W  LLGAC    N  +    A+ + ELKP     Y+LL N+Y 
Sbjct: 697 EAADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYYILLSNMYA 756

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
              RW++A K+R LMK  G KK PG SW++
Sbjct: 757 EAERWDEANKVRELMKSRGAKKNPGCSWVQ 786



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 143/253 (56%), Gaps = 9/253 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K G EVH   + + +  +V + +SL+DMY K G    +  +F+KM  +N VS +A++  
Sbjct: 358 FKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIAN 417

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + +       + + R+M    E  +  +F  VL ACA L  L +GKE+H + IR     D
Sbjct: 418 FARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLD 477

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL D+Y+KCGC++ A  +F  + VR+ +++N +I G+++     E+LR+F +M  
Sbjct: 478 LFVSNALTDMYSKCGCLNLAQNVF-NISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRL 536

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD VSF+GV+SAC+++  I +G++    + ++      +   N ++DL  R G ++
Sbjct: 537 LGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKL-FHTHLFVANSLLDLYTRCGRID 595

Query: 238 EAETL---IENAD 247
            A  +   I+N D
Sbjct: 596 LATKVFYCIQNKD 608



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 154/285 (54%), Gaps = 12/285 (4%)

Query: 8   VHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           VH   + +GL G +V V ++LVD+YGKCG    S +VFD++ ++N +S +A++  +   G
Sbjct: 262 VHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRG 321

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
            +   + +FR M +  +     +   +L     L   +LG EVH   ++ +   DV I +
Sbjct: 322 KYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISN 381

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           +L+D+YAK G    A  IF +M VRN+++WN+MI+ FA+N    EA+ +   M   G  P
Sbjct: 382 SLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETP 441

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAE 240
           ++V+F  VL AC+ +G ++ G++  A +    R+   ++ +  N + D+  + G L  A+
Sbjct: 442 NNVTFTNVLPACARLGFLNVGKEIHARII---RVGSSLDLFVSNALTDMYSKCGCLNLAQ 498

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK-KIMELKPD 284
            +  N   R + S   +++G   T  +       ++ +++ ++PD
Sbjct: 499 NVF-NISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPD 542



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 137/290 (47%), Gaps = 36/290 (12%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVF-------------DKM 47
           L Q K+VHA  +  G L  +V + +SL+  Y   G    S  +F             + +
Sbjct: 50  LSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTL 109

Query: 48  LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHC 107
           ++ NS++   +  G+   G + +++R   + +E    ++  VL+ C+    +R G+EVH 
Sbjct: 110 IRANSIA--GVFDGF---GTYNTMVRAGVKPDEC---TYPFVLKVCSDFVEVRKGREVHG 161

Query: 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
              +     DV + + L+  Y  CG    A ++F +MP R+ ++WN++I   + +G  EE
Sbjct: 162 VAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEE 221

Query: 168 ALRIFDDMTEG--GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK-----PKI 220
           AL  F  M     G +PD V+ + VL  C+     +   K  A +   Y +K       +
Sbjct: 222 ALGFFRVMVAAKPGIQPDLVTVVSVLPVCA-----ETEDKVMARIVHCYALKVGLLGGHV 276

Query: 221 EHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHV 270
           +  N +VD+ G+ G  + ++ + +  D R+  S W  ++ +  +FR  ++
Sbjct: 277 KVGNALVDVYGKCGSEKASKKVFDEIDERNVIS-WNAIITS-FSFRGKYM 324


>gi|224140139|ref|XP_002323442.1| predicted protein [Populus trichocarpa]
 gi|222868072|gb|EEF05203.1| predicted protein [Populus trichocarpa]
          Length = 526

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 204/335 (60%), Gaps = 5/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G + H   I+ G   N  + SSLV  YGKCG +D +++VF +M  +N VS +A++ G
Sbjct: 144 LRGGIQYHCLAISAGFIANAYIGSSLVTFYGKCGELDNAYKVFKEMPVRNVVSWTAIISG 203

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q    +  ++++  M    L    F+F  +L AC G  AL  G+  HCQ I       
Sbjct: 204 FAQDWQVDMCLQLYCLMRNSTLKPNDFTFTSLLSACTGSGALGQGRSAHCQIIEMGFVSY 263

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I +ALV +Y KCG V+ A  IF  M  +++++WNSMI+G+AQ+G   + + +F+ M  
Sbjct: 264 LHIANALVSMYCKCGNVEDAFHIFENMVGKDIVSWNSMIAGYAQHGLAVQGIGLFERMKS 323

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F+GVLS+C H G ++ GR +F SM  EY +KP+++HY+C+VDLLGRAGLLE
Sbjct: 324 QGVKPDAITFLGVLSSCRHAGFVEGGRNYFNSMV-EYGVKPELDHYSCIVDLLGRAGLLE 382

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE      ++ +W  L+ +C    +  +  + A+  + L+P+C  ++V L N+Y 
Sbjct: 383 EAQYFIERMPVSPNAVIWGSLVSSCRLHGSVWIGIQAAENTLLLEPECAATHVQLANLYA 442

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +VG W+ A ++R LMK   +K  PG SWIE  +++
Sbjct: 443 SVGFWDQAARVRKLMKDRRLKTNPGCSWIEIKNEV 477



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           + +CA    LR G + HC  I      +  I S+LV  Y KCG +D A+++F +MPVRN+
Sbjct: 135 VSSCASTRDLRGGIQYHCLAISAGFIANAYIGSSLVTFYGKCGELDNAYKVFKEMPVRNV 194

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ++W ++ISGFAQ+ + +  L+++  M     KP+  +F  +LSAC+  G + +GR     
Sbjct: 195 VSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFTFTSLLSACTGSGALGQGRSAHCQ 254

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
           +  E      +   N +V +  + G +E+A  + EN
Sbjct: 255 II-EMGFVSYLHIANALVSMYCKCGNVEDAFHIFEN 289


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/316 (39%), Positives = 201/316 (63%), Gaps = 4/316 (1%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-- 79
           V  S+++  Y +CG VDE+ RVF +  +K+ V  +A++ GY + G  E  + +F EM   
Sbjct: 257 VTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLE 316

Query: 80  --EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
             E D ++   V+ +CA LA+L  G+ VH + I      ++++ SAL+D+Y+KCG +D A
Sbjct: 317 HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDA 376

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
             +F  MP RN+++WN+MI G AQNG  ++AL +F++M +   KPD+V+FIG+LSAC H 
Sbjct: 377 RSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHC 436

Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
             I++G+++F S+T ++ + P ++HY CMV+LLGR G +E+A  LI+N     D  +W  
Sbjct: 437 NWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWST 496

Query: 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
           LL  C+T  +   AE  A+ + EL P   + Y++L N+Y ++GRW D   +R LMK   V
Sbjct: 497 LLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNV 556

Query: 318 KKMPGKSWIEANSKLN 333
           KK  G SWIE +++++
Sbjct: 557 KKFAGFSWIEIDNEVH 572



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 147/302 (48%), Gaps = 15/302 (4%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY----CQTGDFESVIRIFREMEE 80
           ++L+  Y K G +      FD+M  ++SVS +  + G+    C     E   R+ RE  E
Sbjct: 93  NALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFE 152

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
              ++   +L A A L+ LR GK++H   I R+   +V I +AL D+YAKCG ++ A  +
Sbjct: 153 PTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWL 212

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F  +  +NL++WN MISG+A+NG+ E+ + +   M   G  PD V+   +++A    G +
Sbjct: 213 FDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRV 272

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH---DSSLWEV 257
           D  R+ F+    E++ K  I  +  M+    + G  E+A  L       H   DS     
Sbjct: 273 DEARRVFS----EFKEK-DIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSS 327

Query: 258 LLGACTTFRNAHVAERVAKK--IMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
           ++ +C    + H  + V  K  +  L  +  +S  L+D +Y   G  +DA  +  LM   
Sbjct: 328 VVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALID-MYSKCGFIDDARSVFNLMPTR 386

Query: 316 GV 317
            V
Sbjct: 387 NV 388



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 139/295 (47%), Gaps = 55/295 (18%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H  +I     GNV + ++L DMY KCG ++++  +FD + KKN VS + ++ G
Sbjct: 171 LRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISG 230

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVII 120
           Y + G  E  I +  +M                                R SG   D + 
Sbjct: 231 YAKNGQPEKCIGLLHQM--------------------------------RLSGHMPDQVT 258

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            S ++  Y +CG VD A ++F +   ++++ W +M+ G+A+NGR E+AL +F++M     
Sbjct: 259 MSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHI 318

Query: 181 KPDHVSFIGVLSACS-----HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           +PD  +   V+S+C+     H G    G+   A +     +       + ++D+  + G 
Sbjct: 319 EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVS------SALIDMYSKCGF 372

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME------LKPD 284
           +++A ++      R+  S W  ++  C   +N H  ++ A ++ E       KPD
Sbjct: 373 IDDARSVFNLMPTRNVVS-WNAMIVGCA--QNGH--DKDALELFENMLQQKFKPD 422



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 37/203 (18%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VH K I  GL  N++V S+L+DMY KCG +D++  VF+ M  +N VS +A++ G
Sbjct: 338 LHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVG 397

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  +  + +F  M +     D  +F  +L AC     +  G+E       + G   
Sbjct: 398 CAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGM-- 455

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               +  +D YA                         M++   + GR E+A+ +  +M  
Sbjct: 456 ----TPTLDHYA------------------------CMVNLLGRTGRIEQAVALIKNMAH 487

Query: 178 GGTKPDHVSFIGVLSACSHMGLI 200
               PD + +  +LS CS  G I
Sbjct: 488 ---DPDFLIWSTLLSICSTKGDI 507



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 24/222 (10%)

Query: 55  SSALLQGYCQ-------TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLG 102
           S+A  + Y Q       T +     R+   ME       D F    +L   A    LR  
Sbjct: 18  STATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDA 77

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           + +  + ++R    D+   +AL+  YAK G +      F +MP R+ +++N+ I+GF+ N
Sbjct: 78  QNLFDKMLKR----DIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGN 133

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIE 221
              +E+L +F  M   G +P   + + +L+A + +  +  G++ H + + + +     I 
Sbjct: 134 SCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFI- 192

Query: 222 HYNCMVDLLGRAGLLEEAETLIENADCRHDSSL--WEVLLGA 261
            +N + D+  + G +E+A  L    DC    +L  W +++  
Sbjct: 193 -WNALTDMYAKCGEIEQARWLF---DCLTKKNLVSWNLMISG 230


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 213/344 (61%), Gaps = 16/344 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             +GK+VH +++  G  G+V V + L+ +YG CG +D + +VFD+M +++ VS ++++  
Sbjct: 144 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 203

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-- 116
             + G+++S +++FREM+   E D ++   VL ACAGL +L LG   H   +R+      
Sbjct: 204 LVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 263

Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV+++++L+++Y KCG +  A Q+F  M  R+L +WN+MI GFA +GR EEA+  FD M
Sbjct: 264 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 323

Query: 176 TEG--GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            +     +P+ V+F+G+L AC+H G +++GR++F  M ++Y I+P +EHY C+VDL+ RA
Sbjct: 324 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 383

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGA-CTTFRNAHVAERVAKKIMELKPD-------C 285
           G + EA  ++ +   + D+ +W  LL A C    +  ++E +A+ I+  K D       C
Sbjct: 384 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 443

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
             +YVLL  VY +  RWND   +R LM   G++K PG S IE N
Sbjct: 444 SGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEIN 487



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 29/304 (9%)

Query: 2   LKQGKEVHAKVI---------TLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKN 51
           + Q K++HA  +         TL L G ++ + SS  D       V+ + RVFD +   +
Sbjct: 38  MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSD-------VNYAFRVFDSIENHS 90

Query: 52  SVSSSALLQGYCQ-TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEV 105
           S   + L++         E    ++R+M E      D  +F  VL+ACA +     GK+V
Sbjct: 91  SFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQV 150

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
           HCQ ++     DV + + L+ LY  CGC+D A ++F +MP R+L++WNSMI    + G  
Sbjct: 151 HCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEY 210

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-- 223
           + AL++F +M +   +PD  +   VLSAC+ +G +  G    A + ++  +   ++    
Sbjct: 211 DSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVK 269

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA---ERVAKKIME 280
           N ++++  + G L  AE + +    R  +S   ++LG  T  R        +R+  K   
Sbjct: 270 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 329

Query: 281 LKPD 284
           ++P+
Sbjct: 330 VRPN 333


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/322 (40%), Positives = 203/322 (63%), Gaps = 6/322 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +++  +S++  Y +CG + ++  +F  M +K+ VS SA++ GY Q   F   + +F+EM+
Sbjct: 336 DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ 395

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
                 D  +    + AC  LA L LGK +H  YI R+  + +VI+ + L+D+Y KCGCV
Sbjct: 396 LHGVRPDETALVSAISACTHLATLDLGKWIHA-YISRNKLQVNVILSTTLIDMYMKCGCV 454

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           + A ++F  M  + + TWN++I G A NG  E++L +F DM + GT P+ ++F+GVL AC
Sbjct: 455 ENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGAC 514

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
            HMGL++ GR +F SM  E++I+  I+HY CMVDLLGRAGLL+EAE LI++     D + 
Sbjct: 515 RHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVAT 574

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LLGAC   R+  + ER+ +K+++L+PD    +VLL N+Y + G W +  +IR +M  
Sbjct: 575 WGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQ 634

Query: 315 SGVKKMPGKSWIEANSKLNHDL 336
            GV K PG S IEAN  ++  L
Sbjct: 635 HGVVKTPGCSMIEANGTVHEFL 656



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 129/274 (47%), Gaps = 49/274 (17%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G+++HA  ++ G  G+V V ++L+++Y  CG V  + RVF++    + VS + LL GY 
Sbjct: 123 EGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYV 182

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
           Q G+ E   R+F  M E                                   ++ I  ++
Sbjct: 183 QAGEVEEAERVFEGMPE-----------------------------------RNTIASNS 207

Query: 124 LVDLYAKCGCVDFAHQIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++ L+ + GCV+ A +IF  ++   R++++W++M+S + QN  GEEAL +F +M   G  
Sbjct: 208 MIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVA 267

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRAGLLE 237
            D V  +  LSACS +  ++ GR           +K  +E Y    N ++ L    G + 
Sbjct: 268 VDEVVVVSALSACSRVLNVEMGR-----WVHGLAVKVGVEDYVSLKNALIHLYSSCGEIV 322

Query: 238 EAETLIENADCRHDSSLWEVLLGA---CTTFRNA 268
           +A  + ++     D   W  ++     C + ++A
Sbjct: 323 DARRIFDDGGELLDLISWNSMISGYLRCGSIQDA 356



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 107/210 (50%), Gaps = 12/210 (5%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESH---RVFDKMLKKNSVSSSALLQG- 61
           K++ ++ I  GL  +    S L++       +   H   R+F+ +   N+ + + +++  
Sbjct: 20  KQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMRAH 79

Query: 62  -YCQTGDFESVIR---IFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            Y Q    ++++          + D +++ I+L+ CA   +   G+++H   +      D
Sbjct: 80  LYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGD 139

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + L++LYA CG V  A ++F + PV +L++WN++++G+ Q G  EEA R+F+ M E
Sbjct: 140 VYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPE 199

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
             T    ++   +++     G +++ R+ F
Sbjct: 200 RNT----IASNSMIALFGRKGCVEKARRIF 225



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 8/197 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +HA +    L  NV++ ++L+DMY KCG V+ +  VF  M +K   + +A++ G
Sbjct: 419 LDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILG 478

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  + +F +M++     +  +F  VL AC  +  +  G+      I     + 
Sbjct: 479 LAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEA 538

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDDM 175
            I     +VDL  + G +  A ++   MP+  ++ TW +++    ++   E   R+   +
Sbjct: 539 NIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKL 598

Query: 176 TEGGTKPDHVSFIGVLS 192
            +   +PDH  F  +LS
Sbjct: 599 IQ--LQPDHDGFHVLLS 613


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 135/315 (42%), Positives = 192/315 (60%), Gaps = 6/315 (1%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF 84
           ++L+  Y + G + ++  +FD+M  +N+VS SA++ GY Q GD    +RIF  M+  D+ 
Sbjct: 147 NTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVR 206

Query: 85  SFGIVL----RACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQ 139
               VL     ACA   AL  GK VH  Y++  G K ++   +ALVD+Y+KCG V  A  
Sbjct: 207 PDDTVLVGVLAACAQHGALEQGKWVH-GYLKAHGIKINLFFGTALVDMYSKCGEVQLAMD 265

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +M  +N++ W +MI G A +GRG EA+ +F  M   G +PD ++FIGVL AC+H GL
Sbjct: 266 VFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGL 325

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +D+GR+ F SM ++Y IKPKIEHY CMVDLL R G L EA+ +I+      D+ +W  L+
Sbjct: 326 VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALM 385

Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
             C   +N   AE VAK  + L+PD   +YVLL N+Y A GR   A +IR LM+  GV K
Sbjct: 386 AGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDK 445

Query: 320 MPGKSWIEANSKLNH 334
            PG S +E N  ++ 
Sbjct: 446 TPGCSTVEVNGVIHQ 460



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           +R +   D    + L+  YA+ G +  A  +F +MP RN ++W++M++G+ Q G G EAL
Sbjct: 135 LRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREAL 194

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
           RIF  M     +PD    +GVL+AC+  G +++G K      K + IK  +     +VD+
Sbjct: 195 RIFARMQAEDVRPDDTVLVGVLAACAQHGALEQG-KWVHGYLKAHGIKINLFFGTALVDM 253

Query: 230 LGRAGLLEEAETLIE 244
             + G ++ A  + E
Sbjct: 254 YSKCGEVQLAMDVFE 268



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VH  +   G+  N+   ++LVDMY KCG V  +  VF++M  KN ++ + +++G
Sbjct: 225 LEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKG 284

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F +ME      D  +F  VL AC     +  G+E+    +R+ G K 
Sbjct: 285 LAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKP 344

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            I     +VDL A+ G +  A ++  +MP+  + + W ++++G
Sbjct: 345 KIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAG 387


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/333 (37%), Positives = 202/333 (60%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VHA+ +   L  NV V S+LVDMYGKC  V +++R F+ + +KN VS +A++  Y Q
Sbjct: 228 GAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQ 287

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              +E  +++F +ME    + + F++ + L +CAGLAALR G  +    ++      +++
Sbjct: 288 NELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLV 347

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+++Y+K G ++ AH++F+ MP+R++++WN +I+G+A +G   E +  F  M     
Sbjct: 348 SNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAV 407

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P +V+F+GVLSAC+ +GL+D    +  +M KE  I P  EHY CMV LL R G L+EAE
Sbjct: 408 IPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAE 467

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I N     D   W  LL +C  ++N  +  RVA++I++L+P    +YVLL N+Y    
Sbjct: 468 RFIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKAN 527

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           RW+   K+R  M+   V+K PG SWI   S ++
Sbjct: 528 RWDGVVKVRKHMRERAVRKSPGVSWIHVGSDVH 560



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 166/332 (50%), Gaps = 24/332 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++ H   +  G      V ++++ MY +C  ++++ +VF+ +   ++ + ++++ GY  
Sbjct: 127 GRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLD 186

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  + I R M    E+ D  S+  VL  CA +    LG +VH Q +++    +V +
Sbjct: 187 RGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYV 246

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVD+Y KC  V  A++ F  +P +N+++W ++++ + QN   E+AL++F DM   G 
Sbjct: 247 GSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGV 306

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +P+  ++   L++C+ +  +  G    A + K       +   N ++++  ++G +E+A 
Sbjct: 307 QPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVS-NALMNMYSKSGSIEDAH 365

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-----LKPDCHLSYVLLDNV 295
            +  +   R D   W +++         +    +A++ ME     L      SYV    V
Sbjct: 366 RVFISMPLR-DVVSWNLII-------TGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGV 417

Query: 296 YRA---VGRWNDAF-KIRTLMKYSGVKKMPGK 323
             A   +G  ++AF  + T+MK  G+   PGK
Sbjct: 418 LSACAQLGLVDEAFYYLNTMMKEVGIT--PGK 447



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 131/244 (53%), Gaps = 3/244 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK +HA++IT     +VV+ ++L+  Y KCG V  +  VFD M  +N+VS++ L+ G
Sbjct: 27  LSKGKALHARLITAAHF-DVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSG 85

Query: 62  YCQTGDFESVIRIFREME-EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           Y  +G  +  +++ R ++  ++ +     + A A + +  +G++ H   ++    +   +
Sbjct: 86  YASSGRHKESLQLLRVVDFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYV 145

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A++ +Y +C  ++ A ++F  +   +   +NSMI+G+   G+ + +L I  +MT    
Sbjct: 146 FNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAE 205

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           K D+VS++ VL  C+ M     G +  A   K+ R++  +   + +VD+ G+   + +A 
Sbjct: 206 KWDYVSYVAVLGHCASMKDSVLGAQVHAQALKK-RLELNVYVGSALVDMYGKCDHVHDAN 264

Query: 241 TLIE 244
              E
Sbjct: 265 RAFE 268



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  + A V+  G   +++V ++L++MY K G ++++HRVF  M  ++ VS + ++ G
Sbjct: 326 LRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITG 385

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     +  F  M    +     +F  VL ACA     +LG      Y   +  K+
Sbjct: 386 YAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACA-----QLGLVDEAFYYLNTMMKE 440

Query: 118 VIIE------SALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMIS 157
           V I       + +V L  + G +D A +  +   +  +++ W S+++
Sbjct: 441 VGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRSLLN 487


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 204/330 (61%), Gaps = 5/330 (1%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++HA V+      +  V ++L D Y K G  +E+ ++F+ + +K+ V+ SA+L GY Q G
Sbjct: 413 QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMG 472

Query: 67  DFESVIRIF----REMEEIDLFSFGIVLRACAG-LAALRLGKEVHCQYIRRSGCKDVIIE 121
           D E  ++IF    +E  E + F+F  VL ACA   A++  GK+ H   I+      + + 
Sbjct: 473 DIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVS 532

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SALV +YAK G ++ A+++F +   R+L++WNSMISG+AQ+G G+++L+IF++M     +
Sbjct: 533 SALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLE 592

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D ++FIGV+SAC+H GL++ G+++F  M K+Y I P +EHY+CMVDL  RAG+LE+A  
Sbjct: 593 LDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMD 652

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           LI        +++W  LL AC    N  + E  A+K++ L+P    +YVLL N+Y   G 
Sbjct: 653 LINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGN 712

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           W +  K+R LM    VKK  G SWIE  +K
Sbjct: 713 WQERAKVRKLMDMKKVKKEAGYSWIEVKNK 742



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 140/263 (53%), Gaps = 11/263 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G +VH  VI  GL   + V +S+V+MY K  +V ++  VFD M  +N+VS ++++ G
Sbjct: 209 VEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAG 268

Query: 62  YCQTG-DFESVIRIFR-EMEEIDLFS--FGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G D E+    +R  +E + L    F  V++ CA +  +   K++HCQ I+     D
Sbjct: 269 FVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFD 328

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + I++AL+  Y+KC  +D A ++F  M  V+N+++W ++ISG+ QNGR + A+ +F  M 
Sbjct: 329 LNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMR 388

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P+H ++  +L+A +    +   + H   +   Y   P +     + D   + G  
Sbjct: 389 REGVRPNHFTYSTILTANA---AVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDA 443

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
            EA  + E  D   D   W  +L
Sbjct: 444 NEAAKIFELID-EKDIVAWSAML 465



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 4/197 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH + I  G   +V V +SLVDMY K   V++  RVFD+M  KN VS ++LL GY Q
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  +++F +M+    + + F+F  VL   A   A+  G +VH   I+      + +
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +++V++Y+K   V  A  +F  M  RN ++WNSMI+GF  NG   EA  +F  M   G 
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 181 KPDHVSFIGVLSACSHM 197
           K     F  V+  C+++
Sbjct: 291 KLTQTIFATVIKLCANI 307



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 122/229 (53%), Gaps = 6/229 (2%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAG 95
           S ++FD+  ++    ++ LL  + +    +  + +F    R     D  S   VL+ C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
           L    +GK+VHCQ I+    +DV + ++LVD+Y K   V+   ++F +M V+N+++W S+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215
           ++G+ QNG  E+AL++F  M   G KP+  +F  VL   +  G +++G +   +M  +  
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           +   I   N MV++  ++ ++ +A+ + ++ + R+  S W  ++    T
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVS-WNSMIAGFVT 271



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QGK+ H+  I  G    + V S+LV MY K G ++ ++ VF + + ++ VS ++++ G
Sbjct: 510 VEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISG 569

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  ++IF EM     E+D  +F  V+ AC     +  G+      ++      
Sbjct: 570 YAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVP 629

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISG 158
            +   S +VDLY++ G ++ A  +  +MP     T W ++++ 
Sbjct: 630 TMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAA 672


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 213/344 (61%), Gaps = 16/344 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             +GK+VH +++  G  G+V V + L+ +YG CG +D + +VFD+M +++ VS ++++  
Sbjct: 158 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 217

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-- 116
             + G+++S +++FREM+   E D ++   VL ACAGL +L LG   H   +R+      
Sbjct: 218 LVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 277

Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV+++++L+++Y KCG +  A Q+F  M  R+L +WN+MI GFA +GR EEA+  FD M
Sbjct: 278 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 337

Query: 176 TEG--GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            +     +P+ V+F+G+L AC+H G +++GR++F  M ++Y I+P +EHY C+VDL+ RA
Sbjct: 338 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 397

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGA-CTTFRNAHVAERVAKKIMELKPD-------C 285
           G + EA  ++ +   + D+ +W  LL A C    +  ++E +A+ I+  K D       C
Sbjct: 398 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 457

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
             +YVLL  VY +  RWND   +R LM   G++K PG S IE N
Sbjct: 458 SGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEIN 501



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 29/304 (9%)

Query: 2   LKQGKEVHAKVI---------TLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKN 51
           + Q K++HA  +         TL L G ++ + SS  D       V+ + RVFD +   +
Sbjct: 52  MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSD-------VNYAFRVFDSIENHS 104

Query: 52  SVSSSALLQGYCQ-TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEV 105
           S   + L++         E    ++R+M E      D  +F  VL+ACA +     GK+V
Sbjct: 105 SFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQV 164

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
           HCQ ++     DV + + L+ LY  CGC+D A ++F +MP R+L++WNSMI    + G  
Sbjct: 165 HCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEY 224

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-- 223
           + AL++F +M +   +PD  +   VLSAC+ +G +  G    A + ++  +   ++    
Sbjct: 225 DSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVK 283

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA---ERVAKKIME 280
           N ++++  + G L  AE + +    R  +S   ++LG  T  R        +R+  K   
Sbjct: 284 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 343

Query: 281 LKPD 284
           ++P+
Sbjct: 344 VRPN 347


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 206/361 (57%), Gaps = 37/361 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCG----------------------------- 35
           G +VH +V+  G+  +  VE++LVDMY +CG                             
Sbjct: 180 GMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVR 239

Query: 36  --LVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
              VD +  +FD M ++++++ +A++ GY Q G F   +  FR M+      D F+   V
Sbjct: 240 SGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSV 299

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           + ACA L AL  G+     Y+ R G K DV + +AL+D+Y+KCG ++ A  +F  M  R+
Sbjct: 300 VTACAQLGALETGEWARI-YMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRD 358

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
             TW ++I G A NGRGEEA+ +F  M      PD V+F+GVL+AC+H GL+D+GR+ F 
Sbjct: 359 KFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFL 418

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
           SMT+ Y I P + HY C++D+LGRAG L+EA   I+    + +S++W  LL +C  + N+
Sbjct: 419 SMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNS 478

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            + E  A++++EL PD   +Y+LL N+Y    RW D  +IR ++   G+KK PG S IE 
Sbjct: 479 EIGELAAERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEM 538

Query: 329 N 329
           N
Sbjct: 539 N 539



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 135/322 (41%), Gaps = 40/322 (12%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN----SVSSSALLQGYC 63
           +HA V+  G+  N    SSL+ MY   G    +  V +           V  +AL+ G+ 
Sbjct: 78  IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137

Query: 64  QTGDFE----SVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           ++G FE    S + + R        ++  VL AC     L LG +VH + +      D  
Sbjct: 138 RSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQR 197

Query: 120 IESALVDLYAKC-------------------------------GCVDFAHQIFLQMPVRN 148
           +E+ALVD+YA+C                               G VD A  +F  MP R+
Sbjct: 198 VENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERD 257

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
            I W +MI G+ Q GR  +AL  F  M     + D  + + V++AC+ +G ++ G     
Sbjct: 258 TIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARI 317

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            M +   IK  +   N ++D+  + G +E A  + ++   R   +   ++LG     R  
Sbjct: 318 YMGR-LGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGE 376

Query: 269 HVAERVAKKIMELKPDCHLSYV 290
              +   + +  L+    +++V
Sbjct: 377 EAIDMFYRMLRALQTPDEVTFV 398



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+     +  LG+  +V V ++L+DMY KCG ++ +  VF  M  ++  + +A++ G
Sbjct: 309 LETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILG 368

Query: 62  YCQTGDFESVI----RIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  I    R+ R ++  D  +F  VL AC     +  G+E             
Sbjct: 369 LAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISP 428

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGE 166
            ++    L+D+  + G +  A     +MP++ N   W ++++     G  E
Sbjct: 429 TVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSE 479



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 17/175 (9%)

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           + WN++ISG  ++GR E +   F DM         V+++ VLSAC       +G+     
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACG------KGKDLLLG 180

Query: 210 MTKEYR-----IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           M    R     + P     N +VD+    G ++ A  L E    R  +S   V+ G    
Sbjct: 181 MQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISG---L 237

Query: 265 FRNAHVAERVAKKIMELKPDCH-LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
            R+  V    A+ + +  P+   +++  + + Y  VGR+ DA +    M+   V+
Sbjct: 238 VRSGQVDR--ARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVR 290


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/340 (40%), Positives = 208/340 (61%), Gaps = 13/340 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+ VH+ +   G   N+ + ++L+D+Y K G V+ +  +FD +  K+ +S + L+ G
Sbjct: 238 IELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGG 297

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y     ++  + +F+EM    E  +  +   +L ACA L A+ +G+ +H  YI +   K 
Sbjct: 298 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV-YINKK-LKG 355

Query: 118 VI-----IESALVDLYAKCGCVDFAHQIF-LQMPVRNLITWNSMISGFAQNGRGEEALRI 171
           V+     ++++L+D+YAKCG +D A Q+F   M  R+L TWN+MISGFA +GR   A  I
Sbjct: 356 VVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDI 415

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           F  M   G +PD ++F+G+LSACSH G++D GR  F SMT+ Y I PK+EHY CM+DLLG
Sbjct: 416 FSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLG 475

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVL 291
            +GL +EAE +I       D  +W  LL AC    N  + E  AKK+++++P    SYVL
Sbjct: 476 HSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVL 535

Query: 292 LDNVYRAVGRWNDAFKIRTLMKYSGV-KKMPGKSWIEANS 330
           L N+Y A GRWN+  KIR L+   G+ KK+PG S IE +S
Sbjct: 536 LSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDS 575



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 154/307 (50%), Gaps = 38/307 (12%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDE--------SHR------------ 42
           K+G+++H  V+ LG   ++ V +SL+ MY + G +++        SHR            
Sbjct: 106 KEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGY 165

Query: 43  -----------VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI-----DLFSF 86
                      +FD++  K+ VS +A++ GY +TG+++  + +F+EM  +     D  + 
Sbjct: 166 VSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTM 225

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             V+ ACA   ++ LG+ VH          ++ I +AL+DLY+K G V+ A ++F  +  
Sbjct: 226 VTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWN 285

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +++I+WN++I G+      +EAL +F +M   G  P+ V+ + +L AC+H+G ID GR  
Sbjct: 286 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 345

Query: 207 FASMTKEYR--IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
              + K+ +  +         ++D+  + G ++ A+ + +++      S W  ++     
Sbjct: 346 HVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAM 405

Query: 265 FRNAHVA 271
              A+ A
Sbjct: 406 HGRANAA 412



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 137/297 (46%), Gaps = 41/297 (13%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD---ESHRVFDKMLKKNSVSSSALLQGY 62
           + +HA++I  GL       S L++        D    +  VFD + + N +  + + +G+
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64

Query: 63  CQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
             + D  S ++++  M  +    D ++F  +L++CA     + G+++H   ++     D+
Sbjct: 65  ALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDI 124

Query: 119 IIESALVDLYAKC-------------------------------GCVDFAHQIFLQMPVR 147
            + ++L+ +YA+                                G ++ A ++F ++P +
Sbjct: 125 YVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGK 184

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDD-MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           ++++WN+MISG+ + G  +EAL +F + M     +PD  + + V+SAC+    I+ GR H
Sbjct: 185 DVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR-H 243

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
             S   ++     ++  N ++DL  + G +E A  L +      D   W  L+G  T
Sbjct: 244 VHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGL-WNKDVISWNTLIGGYT 299


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/335 (39%), Positives = 197/335 (58%), Gaps = 3/335 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK VH  +    L  N  V ++L DMY KCG + ++H VF  M KK+ +S + ++ G
Sbjct: 470 LKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGG 529

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y +       + +F EM+   + D  +   +L ACA LAAL  G+E+H   +R    +D 
Sbjct: 530 YTKNSLPNEALTLFAEMQRESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDK 589

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +A+VD+Y KCG +  A  +F  +P ++L++W  MI+G+  +G G EA+  F+ M   
Sbjct: 590 YVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMT 649

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD VSFI +L ACSH GL+D G K F  M KE +I+P +EHY CMVDLL R G L +
Sbjct: 650 GIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVK 709

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   I+    + D+++W  LL  C    +  +AE+VA++I EL+P+    YVLL N+Y  
Sbjct: 710 AHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAE 769

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             +W +  K+R  +   G+KK PG SWIE   K+N
Sbjct: 770 AEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKIN 804



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 154/292 (52%), Gaps = 12/292 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+++G++VH  +  LG      V +SL+  Y     V  + ++FD++  ++ +S ++++ 
Sbjct: 266 RVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMIS 325

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC- 115
           GY + G  +  I IF +M     +IDL +   V  ACA +  L LGK +H   I+ +   
Sbjct: 326 GYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLD 385

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           ++V   + L+D+Y+KCG ++ A ++F +M  + +++W SMI+G+ + G  + A+++FD+M
Sbjct: 386 REVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEM 445

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  PD  +   +L+AC+  G +  G K      +E  ++      N + D+  + G 
Sbjct: 446 KSRGVVPDVYAVTSILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCGS 504

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV---AKKIMELKPD 284
           +++A  +  +   + D   W  ++G  T  +N+   E +   A+   E KPD
Sbjct: 505 MKDAHDVFSHMK-KKDVISWNTMIGGYT--KNSLPNEALTLFAEMQRESKPD 553



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 126/250 (50%), Gaps = 4/250 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+ V + + + G+  + ++   LV MY KCG + E   VFDK+ +      + ++  
Sbjct: 166 IRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISE 225

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y  +G++   I +F++M E+ +    ++F  +L+  A +A +  G++VH    +      
Sbjct: 226 YSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSY 285

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++L+  Y     V  A ++F ++  R++I+WNSMISG+ +NG  +  + IF  M  
Sbjct: 286 NTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLV 345

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G   D  + + V  AC+++G +  G+   +   K   +  ++   N ++D+  + G L 
Sbjct: 346 FGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLN 405

Query: 238 EAETLIENAD 247
            A  + E  D
Sbjct: 406 SAIRVFERMD 415



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 4/156 (2%)

Query: 53  VSSSALLQGYCQTGDFESVIRIF--REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYI 110
           + SS  +  +C+ GD ++ + +    +    DL ++  +L+ CA   ++R G+ V    I
Sbjct: 118 LDSSRKIVEFCEVGDLKNAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVR-SII 176

Query: 111 RRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
             SG   D I+   LV +Y KCG +     +F ++    +  WN MIS ++ +G   E++
Sbjct: 177 ESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESI 236

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +F  M E G KP+  +F  +L   + +  ++ GR+
Sbjct: 237 NLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQ 272


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 125/327 (38%), Positives = 196/327 (59%), Gaps = 14/327 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKM----------LKKNSVSSSALLQGYCQTGDFE 69
           N+V  ++L+  Y + GL DE++  F  M          ++ N +S SA++ G+   G  E
Sbjct: 333 NLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGE 392

Query: 70  SVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV 125
             + +FR+M+   +     +   VL  CA LAAL LG+E+H   IR     ++++ + L+
Sbjct: 393 KSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLI 452

Query: 126 DLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185
           ++Y KCG     H +F  +  R+LI+WNS+I G+  +G GE ALR F++M     KPD++
Sbjct: 453 NMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNI 512

Query: 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
           +F+ +LSACSH GL+  GR  F  M  E+RI+P +EHY CMVDLLGRAGLL+EA  ++ N
Sbjct: 513 TFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRN 572

Query: 246 ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305
                +  +W  LL +C  +++  + E  A +I+ LK     S++LL N+Y A GRW+D+
Sbjct: 573 MPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDS 632

Query: 306 FKIRTLMKYSGVKKMPGKSWIEANSKL 332
            ++R   +  G+KK+PG+SWIE   K+
Sbjct: 633 ARVRVSARTKGLKKIPGQSWIEVRKKV 659



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 150/360 (41%), Gaps = 86/360 (23%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH   + +G   ++ V + LV MYGK G ++++ ++FD M  ++ VS + ++ GY    D
Sbjct: 154 VHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRD 213

Query: 68  FESVIRIFREME---------------------------------------EIDLFSFGI 88
                R+F+ ME                                       EI   +  +
Sbjct: 214 SLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAV 273

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           VL  CA +A +  GKE+H  Y+ + G +D + +++AL+  Y K   +  AH++FL++  +
Sbjct: 274 VLSVCADMAEVDWGKEIH-GYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNK 332

Query: 148 NLITWNSM-----------------------------------------ISGFAQNGRGE 166
           NL++WN++                                         ISGFA  GRGE
Sbjct: 333 NLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGE 392

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           ++L +F  M       + V+   VLS C+ +  ++ GR+      +   +   I   N +
Sbjct: 393 KSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNM-MSDNILVGNGL 451

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
           +++  + G  +E   + +N + R D   W  L+G          A R   +++   +KPD
Sbjct: 452 INMYMKCGDFKEGHLVFDNIEGR-DLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPD 510



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 115/221 (52%), Gaps = 17/221 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDK--------MLKKNSV 53
           L+Q +++H++++         + + L+ +Y +   +  + +VFD         +L  NS+
Sbjct: 44  LQQARQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSI 103

Query: 54  SSSALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQY 109
             + +  GY Q       + ++ EM ++    D F+  +V+RAC+ L +  L + VHC  
Sbjct: 104 IRANVSHGYHQ-----HALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHA 158

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           ++      + + + LV +Y K G ++ A Q+F  M VR++++WN+M+SG+A N     A 
Sbjct: 159 LQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGAS 218

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           R+F  M   G +P+ V++  +LS+ +  GL D   + F  M
Sbjct: 219 RVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVM 259



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+H   I   +  N++V + L++MY KCG   E H VFD +  ++ +S ++L+ G
Sbjct: 426 LNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGG 485

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  E+ +R F EM     + D  +F  +L AC+    +  G+ +  Q +     + 
Sbjct: 486 YGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNLFDQMVTEFRIEP 545

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMIS 157
            +   A +VDL  + G +  A  I   MP+  N   W ++++
Sbjct: 546 NVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLN 587


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 213/344 (61%), Gaps = 16/344 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             +GK+VH +++  G  G+V V + L+ +YG CG +D + +VFD+M +++ VS ++++  
Sbjct: 224 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 283

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-- 116
             + G+++S +++FREM+   E D ++   VL ACAGL +L LG   H   +R+      
Sbjct: 284 LVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 343

Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV+++++L+++Y KCG +  A Q+F  M  R+L +WN+MI GFA +GR EEA+  FD M
Sbjct: 344 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 403

Query: 176 TEG--GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            +     +P+ V+F+G+L AC+H G +++GR++F  M ++Y I+P +EHY C+VDL+ RA
Sbjct: 404 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 463

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGA-CTTFRNAHVAERVAKKIMELKPD-------C 285
           G + EA  ++ +   + D+ +W  LL A C    +  ++E +A+ I+  K D       C
Sbjct: 464 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 523

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
             +YVLL  VY +  RWND   +R LM   G++K PG S IE N
Sbjct: 524 SGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEIN 567



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 29/304 (9%)

Query: 2   LKQGKEVHAKVI---------TLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKN 51
           + Q K++HA  +         TL L G ++ + SS  D       V+ + RVFD +   +
Sbjct: 118 MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSD-------VNYAFRVFDSIENHS 170

Query: 52  SVSSSALLQGYCQ-TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEV 105
           S   + L++         E    ++R+M E      D  +F  VL+ACA +     GK+V
Sbjct: 171 SFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQV 230

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
           HCQ ++     DV + + L+ LY  CGC+D A ++F +MP R+L++WNSMI    + G  
Sbjct: 231 HCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEY 290

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-- 223
           + AL++F +M +   +PD  +   VLSAC+ +G +  G    A + ++  +   ++    
Sbjct: 291 DSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVK 349

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA---ERVAKKIME 280
           N ++++  + G L  AE + +    R  +S   ++LG  T  R        +R+  K   
Sbjct: 350 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 409

Query: 281 LKPD 284
           ++P+
Sbjct: 410 VRPN 413


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/331 (38%), Positives = 204/331 (61%), Gaps = 4/331 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R++ G+++HA ++ LGL  ++ VE+S++ MY KCG +  S  +F +M +++ VS S ++ 
Sbjct: 333 RIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIA 392

Query: 61  GYCQTGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q G     FE +  +  E  +   F+   VL AC  +A L  GK++H   +      
Sbjct: 393 GYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 452

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             ++ SAL+++Y KCG ++ A +IF      ++++W +MI+G+A++G   E + +F+ + 
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD V+FIGVLSACSH GL+D G ++F +M+K+Y+I P  EHY CM+DLL RAG L
Sbjct: 513 RVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRL 572

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            +AE +IE      D  +W  LL AC    +     R A++I++L+P+C  +++ L N+Y
Sbjct: 573 SDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIY 632

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            + G+W +A  IR LMK  GV K PG SWI+
Sbjct: 633 ASKGKWREAADIRKLMKSKGVIKEPGWSWIK 663



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 142/272 (52%), Gaps = 8/272 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H   +  GL  +V V S+L+DMY K G + E  RVF +M  +N VS +A++ G  +
Sbjct: 135 GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVR 194

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  +  F EM     E D ++F I L+ACA   AL  G+E+H Q +++       +
Sbjct: 195 AGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFV 254

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L  +Y KCG +++   +F +M +R++++W ++I+   Q G+ E A++ F  M E   
Sbjct: 255 ANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDV 314

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+  +F  V+S C+++  I+ G +  A +     +   +   N ++ +  + G L  + 
Sbjct: 315 SPNEYTFAAVISGCANLARIEWGEQLHA-LILHLGLAASLSVENSIMTMYAKCGQL-TSS 372

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
           ++I +   R D   W  ++   +  +  HV+E
Sbjct: 373 SVIFHEMTRRDIVSWSTIIAGYS--QGGHVSE 402



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 137/254 (53%), Gaps = 13/254 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+HA+ +  G   +  V ++L  MY KCG ++    +F+KM  ++ VS + ++  
Sbjct: 233 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 292

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  ++ F  M E D+    ++F  V+  CA LA +  G+++H   +       
Sbjct: 293 LVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 352

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + +E++++ +YAKCG +  +  IF +M  R++++W+++I+G++Q G   EA  +   M  
Sbjct: 353 LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRM 412

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRA 233
            G KP   +   VLSAC +M +++ G++  A     Y +   +EH     + ++++  + 
Sbjct: 413 EGPKPTEFALASVLSACGNMAILEHGKQLHA-----YVLSIGLEHTAMVLSALINMYCKC 467

Query: 234 GLLEEAETLIENAD 247
           G +EEA  + + A+
Sbjct: 468 GSIEEASRIFDAAE 481



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 9/233 (3%)

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFG 87
           K G +  + R+FDKM +K+ +S + L+ GY    D    + +F+ M       ID F   
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           +  +AC   + +  G+ +H   ++      V + SAL+D+Y K G +    ++F +MP+R
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-H 206
           N+++W ++I+G  + G  +EAL  F +M     + D  +F   L AC+  G ++ GR+ H
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             +M K + +   +   N +  +  + G LE   TL E    R D   W  ++
Sbjct: 241 AQAMKKGFDVSSFVA--NTLATMYNKCGKLEYGLTLFEKMSMR-DVVSWTTII 290


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/319 (42%), Positives = 205/319 (64%), Gaps = 14/319 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N ++ ++L+DMY KCG V+++ R+FD +  KN  S +A++ G  Q G  E  I ++R M+
Sbjct: 262 NTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMK 321

Query: 80  -------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKC 131
                  EI L +   VL ACAGL AL LG+EVH  Y+ R+G   +VI+ +ALVD+YAKC
Sbjct: 322 AQSVKPNEITLVN---VLSACAGLGALELGREVHL-YLGRNGLDLNVILATALVDMYAKC 377

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           G +D A  IF++   +++  WN+MI G A +G G ++L +F  M   G +P+ V+FIGVL
Sbjct: 378 GKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVL 437

Query: 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           SAC+H GL++ GR  F+SM  ++ + PK+EHY CMVDLLGRAG L+EA  L++N     D
Sbjct: 438 SACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPD 497

Query: 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY-VLLDNVYRAVGRWNDAFKIRT 310
           S +W  LL AC   RN  +A+++++ IM    D ++ + +LL N+Y + GRW D  ++R 
Sbjct: 498 SIIWGALLSACRIHRNLELADKISETIMA-SQDPNIGFCILLSNIYASSGRWKDVARVRR 556

Query: 311 LMKYSGVKKMPGKSWIEAN 329
            +K   +KK  G SW+E +
Sbjct: 557 QVKEKRIKKPSGCSWVEVD 575



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 147/294 (50%), Gaps = 40/294 (13%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM---------------- 47
           +G+++H  V+ LG   ++ V +SL+DMY KC  +D +   +D M                
Sbjct: 111 EGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYV 170

Query: 48  ----------------LKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSFG 87
                           +++N V  +A++ GY + GDF  ++ +FR+M    +E+   +  
Sbjct: 171 QWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAAT 230

Query: 88  IV--LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +V  L AC+ L    +G+ +           + I+ +AL+D+Y+KCG V+ A +IF  + 
Sbjct: 231 MVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVS 290

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +NL +WN++I+G  Q G  EEA+ ++  M     KP+ ++ + VLSAC+ +G ++ GR+
Sbjct: 291 CKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGRE 350

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
               + +   +   +     +VD+  + G +++A  LI       D +LW  ++
Sbjct: 351 VHLYLGRN-GLDLNVILATALVDMYAKCGKIDDA-CLIFVKTSEKDVALWNAMI 402



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 136/300 (45%), Gaps = 44/300 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L Q  ++HA+ +  GL     +   L+D++     +D +  V D+       S ++L++ 
Sbjct: 12  LTQIHQIHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTPSPTDFSWNSLIRA 67

Query: 62  YCQTGDFES----VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  ++     +++ R   +   F+F  VL+AC+ L ++  G+++H   +R     D
Sbjct: 68  YTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSD 127

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT- 176
           + + ++L+D+Y KC  +D A   +  M  R+ ++WNS+ISG+ Q G+ E+A  +F++M  
Sbjct: 128 LFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPM 187

Query: 177 ----------------EGG-----------------TKPDHVSFIGVLSACSHMGLIDRG 203
                           EG                   +P+  + + +LSACS +   + G
Sbjct: 188 RRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVG 247

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           R   +      +I         ++D+  + G +E+A  + +   C++  S W  ++  C 
Sbjct: 248 R-FLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPS-WNAIITGCV 305



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+EVH  +   GL  NV++ ++LVDMY KCG +D++  +F K  +K+    +A++ G
Sbjct: 345 LELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILG 404

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               GD    + +F +M    +     +F  VL AC     +  G+        + G   
Sbjct: 405 LAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSP 464

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISG 158
            +   A +VDL  + G +  A+++   M +  + I W +++S 
Sbjct: 465 KLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSA 507



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +LR    L  +    ++H Q +         +   L+DL++    +D+A  +  Q P   
Sbjct: 5   LLRTATSLTQIH---QIHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTPSPT 57

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             +WNS+I  +  +G  + +L ++  M    TKP + +F  VL ACS +G +  G +
Sbjct: 58  DFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQ 114


>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 144/365 (39%), Positives = 206/365 (56%), Gaps = 36/365 (9%)

Query: 5   GKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G  +HA V  LGL   +V+V ++L+DMY KCG V+ +   FD+M  +N VS + ++ GY 
Sbjct: 113 GTAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYM 172

Query: 64  QTGDFESVIRIF-------------------------------REME----EIDLFSFGI 88
           + G FE  +++F                               REM+      D  +   
Sbjct: 173 RNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIA 232

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           V+ ACA L  L LG  VH   + +    +V + ++L+D+Y++CGC+D A Q+F +MP R 
Sbjct: 233 VIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRT 292

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           L++WNS+I GFA NG  +EAL  F+ M E G KPD VS+ G L ACSH GLI  G + F 
Sbjct: 293 LVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFE 352

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            M +  RI P+IEHY C+VDL  RAG LEEA  +++N   + +  +   LL AC T  N 
Sbjct: 353 HMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNI 412

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            +AE V   ++EL      +YVLL N+Y AVG+W+ A K+R  MK  G++K PG S IE 
Sbjct: 413 GLAENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEI 472

Query: 329 NSKLN 333
           +S ++
Sbjct: 473 DSSIH 477



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 44/249 (17%)

Query: 53  VSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACA---GLAALRLGKEV 105
           VS +  +  YC++G        F +M E  +     +F  +L ACA     +++  G  +
Sbjct: 57  VSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAI 116

Query: 106 HCQYIRRSG--CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           H  ++R+ G    DV++ +AL+D+YAKCG V+ A   F QM VRNL++WN+MI G+ +NG
Sbjct: 117 HA-HVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175

Query: 164 RGEEALRIFD-------------------------------DMTEGGTKPDHVSFIGVLS 192
           + E+AL++FD                               +M   G  PD+V+ I V++
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235

Query: 193 ACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           AC+++G +  G   H   MT+++R   K+   N ++D+  R G ++ A  + +    R  
Sbjct: 236 ACANLGTLGLGLWVHRLVMTQDFRNNVKVS--NSLIDMYSRCGCIDLARQVFDRMPQRTL 293

Query: 252 SSLWEVLLG 260
            S   +++G
Sbjct: 294 VSWNSIIVG 302



 Score = 43.9 bits (102), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +++W + I+ + ++G   +A   F  M E   +P+H++FI +LSAC+H     R    F 
Sbjct: 56  IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYP--SRSSISFG 113

Query: 209 SMTKEYRIKPKIEHYNCMV-----DLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +    +  K  ++  + MV     D+  + G +E A    +    R+  S W  ++
Sbjct: 114 TAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVS-WNTMI 168


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/360 (38%), Positives = 208/360 (57%), Gaps = 28/360 (7%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L  GKE H  V+  G   +V V +SL+DMY K   +  +  VFD M  +N  + ++L+ G
Sbjct: 927  LNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSG 986

Query: 62   YCQTGDFESVIRIFREME----EIDLFSF-GIV-----------------------LRAC 93
            Y   G FE  +R+  +ME    + DL ++ G++                       LRAC
Sbjct: 987  YSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRAC 1046

Query: 94   AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
            A L+ L+ GKE+HC  IR    +DV + +AL+D+Y+K   +  AH++F ++  + L +WN
Sbjct: 1047 ASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWN 1106

Query: 154  SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
             MI GFA  G G+EA+ +F++M + G  PD ++F  +LSAC + GLI  G K+F SM  +
Sbjct: 1107 CMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITD 1166

Query: 214  YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAER 273
            YRI P++EHY CMVDLLGRAG L+EA  LI     + D+++W  LLG+C   +N   AE 
Sbjct: 1167 YRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAET 1226

Query: 274  VAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             AK + +L+P+   +Y+L+ N+Y    RW D   +R LM  +GV+     SWI+ N +++
Sbjct: 1227 AAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVH 1286



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 39/236 (16%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L   K++H  V   GL  +V + + L+ MY K G ++ + RVFD M  +N+ S ++++  
Sbjct: 791  LNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISS 850

Query: 62   YCQTGDFESVIRIFREMEEIDL-------------------------------------- 83
            Y   G       +F E+E  D+                                      
Sbjct: 851  YAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPN 910

Query: 84   -FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
              S   VL+A + L  L +GKE H   +R     DV + ++L+D+Y K   +  A  +F 
Sbjct: 911  SSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFD 970

Query: 143  QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
             M  RN+  WNS++SG++  G  E+ALR+ + M + G KPD V++ G++S  +  G
Sbjct: 971  NMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWG 1026



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 103/193 (53%), Gaps = 4/193 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G E+H  +I  G   +V +  +L++ YG+C  ++++++VF +M    ++  +  +    Q
Sbjct: 693 GMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQ 752

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +   +  + +FR+M+    + +  +   VL+AC  + AL   K++H    R     DV +
Sbjct: 753 SEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSL 812

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L+ +Y+K G ++ A ++F  M  RN  +WNSMIS +A  G   +A  +F ++     
Sbjct: 813 CNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDM 872

Query: 181 KPDHVSFIGVLSA 193
           KPD V++  +LS 
Sbjct: 873 KPDIVTWNCLLSG 885



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 120/266 (45%), Gaps = 9/266 (3%)

Query: 26  SLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY-CQTGDFESVIRIFREMEE---- 80
           +L+  Y   G    +  VF   L +N +  ++ ++ +    G    V+ +F+E+      
Sbjct: 612 NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 671

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
            D   + + L+ C  +  + LG E+H   I+R    DV +  AL++ Y +C  ++ A+Q+
Sbjct: 672 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 731

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F +MP    + WN  I    Q+ + ++ + +F  M     K +  + + VL AC  MG +
Sbjct: 732 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGAL 791

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +   K        + +   +   N ++ +  + G LE A  + ++ + R+ SS W  ++ 
Sbjct: 792 N-AAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSS-WNSMIS 849

Query: 261 --ACTTFRNAHVAERVAKKIMELKPD 284
             A   F N   +     +  ++KPD
Sbjct: 850 SYAALGFLNDAWSLFYELESSDMKPD 875


>gi|125550837|gb|EAY96546.1| hypothetical protein OsI_18451 [Oryza sativa Indica Group]
          Length = 591

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/329 (38%), Positives = 203/329 (61%), Gaps = 4/329 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           ++G++VH  V+  G   ++ VES L+D+Y KCGL++++  VF    + + V  + +L G+
Sbjct: 240 REGQQVHGLVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGF 299

Query: 63  CQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G  E    +F EM     EID  +   VL A    A   LGK++H   I+R    + 
Sbjct: 300 AQNGLEEKAFELFAEMVGAGNEIDENTVSTVLGAFGASAPFALGKQIHALVIKRCFGVNT 359

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + LV++Y+KCG +  + Q+F +MP +N ++WNS+I+ FA++G G E  ++F+ M   
Sbjct: 360 YVCNGLVNMYSKCGELRESVQVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKAD 419

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KP  V+F+ +L ACSH+G   +G +   SM+ +Y + P++EHY C+VD+LGRAGLL++
Sbjct: 420 GAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDD 479

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A++ IE+      + LW+ L+GAC+   N+ V +  A+K++ L P C  +YVLL N+Y +
Sbjct: 480 AKSFIEDGPFTDSALLWQALMGACSFHGNSEVGKHAAEKLLLLDPSCTAAYVLLSNIYSS 539

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            GRW+D  K+   M   G++K  GKSWIE
Sbjct: 540 EGRWDDRAKVMKRMSEMGLRKDTGKSWIE 568



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 131/269 (48%), Gaps = 9/269 (3%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH  V++ G    V V ++LV  Y +CG    + RVF  M +KN ++ +A++ G  +   
Sbjct: 145 VHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAEL 204

Query: 68  FESVIRIFREM---EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           ++    +F +M    + +  ++   L ACA   A R G++VH   ++     D+ +ES L
Sbjct: 205 YKESFSLFGQMIRTVDANNATYSCTLLACARSLAAREGQQVHGLVVKAGFEADLHVESGL 264

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D+Y+KCG ++ A  +F      + +    ++ GFAQNG  E+A  +F +M   G + D 
Sbjct: 265 MDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDE 324

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
            +   VL A         G++  A + K  + +   +   N +V++  + G L E+  + 
Sbjct: 325 NTVSTVLGAFGASAPFALGKQIHALVIKRCFGVNTYV--CNGLVNMYSKCGELRESVQVF 382

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAE 272
           +    ++  S W  ++ A    R+ H +E
Sbjct: 383 DEMPSKNSVS-WNSIIAAFA--RHGHGSE 408



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 128/266 (48%), Gaps = 25/266 (9%)

Query: 2   LKQGKEVHAKVIT----LGLCGN-------VVVESSLVDMYGKCGLVDESHRVFDKMLKK 50
           L+ G  +HA V+       LC +       +V  ++LV MY +CG  +++ RVFD+M  +
Sbjct: 27  LRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNALVSMYARCGRREDAARVFDEMRVR 86

Query: 51  NSVSSSALLQGYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACA--GLAALRLGK 103
           ++VS ++L+      GD    + +FR M        D  +F  VL  CA  G A+L    
Sbjct: 87  DAVSWNSLIAASRGAGD---ALALFRRMLRSDARACDRATFTTVLSECARAGAASLPACA 143

Query: 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
            VH   +      +V + +ALV  Y +CG    A ++F  M  +N+ITW +MISG A+  
Sbjct: 144 MVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAE 203

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
             +E+  +F  M       ++ ++   L AC+   L  R  +    +  +   +  +   
Sbjct: 204 LYKESFSLFGQMIR-TVDANNATYSCTLLACAR-SLAAREGQQVHGLVVKAGFEADLHVE 261

Query: 224 NCMVDLLGRAGLLEEAETLIENADCR 249
           + ++D+  + GL+E+A T+  +  CR
Sbjct: 262 SGLMDVYSKCGLMEDALTVFRS--CR 285


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/332 (38%), Positives = 196/332 (59%), Gaps = 7/332 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H + IT+G      VE++LVDMY KC    E+ ++FD +  K++V  +A++  
Sbjct: 358 LRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISA 417

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  I +F +M       D  +F  +LRACA LA++ LG+++H   IR     +
Sbjct: 418 YVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSN 477

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   SAL+D YAKCGC+  A + F +MP RN ++WN++IS +AQNG  +  L  F  M +
Sbjct: 478 VYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQ 537

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD VSF+ VLSACSH G ++    HF SMT+ Y + PK EHY  MVD+L R G  +
Sbjct: 538 SGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFD 597

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPDCHLSYVLLDNV 295
           EAE L+          +W  +L +C   +N  +A++ A ++  ME   D    Y+ + N+
Sbjct: 598 EAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDA-APYINMSNI 656

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           Y   G+W++  K++  M+  GV+K+P  SW+E
Sbjct: 657 YAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVE 688



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 127/257 (49%), Gaps = 13/257 (5%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G++VH  V+      NV V ++L+D Y K   VDE  ++F +M + + +S + ++  Y
Sbjct: 258 KFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSY 317

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G F+    +FR+++        F F  +L        LR+G+++HCQ I      + 
Sbjct: 318 AWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFES 377

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            +E+ALVD+YAKC     A +IF  +  ++ + W +MIS + Q G+ EE + +F DM   
Sbjct: 378 RVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRT 437

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRK------HFASMTKEYRIKPKIEHY---NCMVDL 229
           G   D  +F  +L AC+++  I  GR+          M+  Y     ++ Y    CM D 
Sbjct: 438 GVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDA 497

Query: 230 LGRAGLLEEAETLIENA 246
           +   G + E  ++  NA
Sbjct: 498 IKSFGEMPERNSVSWNA 514



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 136/260 (52%), Gaps = 8/260 (3%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++H  VI LG   N++V +SLVD Y K   +  + ++F  ML K++V+ ++L+ GY   G
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEG 220

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             E  I +F E+    +    F+F  +L A  GL   + G++VH   ++ +   +V + +
Sbjct: 221 LNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGN 280

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           AL+D Y+K   VD   ++F +MP  + I++N +I+ +A NG+ +E+  +F  +       
Sbjct: 281 ALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDR 340

Query: 183 DHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
               F  +LS  +    +  GR+ H  ++T     + ++E  N +VD+  +    +EA+ 
Sbjct: 341 RQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVE--NALVDMYAKCNGDKEAQK 398

Query: 242 LIENADCRHDSSLWEVLLGA 261
           + +N  C+  +  W  ++ A
Sbjct: 399 IFDNIACK-STVPWTAMISA 417



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 2   LKQGKEVHA-KVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L++G  VHA +V       N +  + ++  + K G + ++  +FD M+++ +VS + L+ 
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIG 113

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q+   +   R++ +M     E D  +   +L     L    +  ++H   I+     
Sbjct: 114 GYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEY 173

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++++ ++LVD Y K  C+  A Q+F  M  ++ +T+NS+++G++  G  EEA+ +F ++ 
Sbjct: 174 NLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELH 233

Query: 177 EGGTKPDHVSFIGVLSACSHMGLID 201
             G KP   +F  +LSA   +GL D
Sbjct: 234 NSGIKPSDFTFAALLSAA--VGLDD 256



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 34/126 (26%)

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS--------------------------- 157
           V+ + + G +  AHQ+F QMP +N I+ N MIS                           
Sbjct: 50  VNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWT 109

Query: 158 ----GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM---GLIDRGRKHFASM 210
               G+ Q+ + +EA R++ DM  GG +PD+V+ + +LS    +    +I +   H   +
Sbjct: 110 ILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKL 169

Query: 211 TKEYRI 216
             EY +
Sbjct: 170 GYEYNL 175


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 210/335 (62%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G++VH+ +   G   N+ + +SL+D+Y KCG ++ +  +F+ +L K+ +S + L+ G
Sbjct: 282 IELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGG 341

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR--SGC 115
           Y     ++  + +F+EM    E  +  +   +L ACA L A+ +G+ +H    +R  S  
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSAT 401

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
               + ++L+D+YAKCG ++ AHQ+F  +  ++L +WN+MI GFA +GR + A  IF  M
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRM 461

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G +PD ++F+G+LSACS  G++D GR  F +MT++Y+I PK+EHY CM+DLLG +GL
Sbjct: 462 RKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGL 521

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            +EAE +I N +   D  +W  LL AC    N  + E  A+ +++++P+    YVLL N+
Sbjct: 522 FKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNI 581

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           Y   GRWN+  KIR L+   G+KK+PG S IE +S
Sbjct: 582 YATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDS 616



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 147/300 (49%), Gaps = 49/300 (16%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K+G+++H  V+ LG   ++ V +SL+ +Y + G ++++ +VFD+   ++ VS +AL++G
Sbjct: 150 FKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKG 209

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFG---------------------------------- 87
           Y   G  ES  ++F E+   D+ S+                                   
Sbjct: 210 YASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTM 269

Query: 88  -IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             V+ ACA   ++ LG++VH          ++ I ++L+DLY+KCG ++ A  +F  +  
Sbjct: 270 VTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLY 329

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-- 204
           +++I+WN++I G+      +EAL +F +M   G +P+ V+ + +L AC+H+G ID GR  
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWI 389

Query: 205 -----KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
                K   S T    ++        ++D+  + G +E A  +  N+      S W  ++
Sbjct: 390 HVYIDKRLKSATNASSLR------TSLIDMYAKCGDIEAAHQVF-NSILHKSLSSWNAMI 442



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 147/300 (49%), Gaps = 40/300 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD---ESHRVFDKMLKKNSVSSSAL 58
           L+  + +HA++I  GL       S L+++       D    +  VF+ + + N +  + +
Sbjct: 46  LQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTM 105

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIR--- 111
            +G+  + D  S ++++  M  + L    ++F  +L++CA   A + G+++H   ++   
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGY 165

Query: 112 ----------------------------RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
                                       RS  +DV+  +AL+  YA  G ++ A ++F +
Sbjct: 166 DLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDE 225

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           +PV+++++WN+MISG+A+ G  +EAL +F +M +   +PD  + + V+SAC+  G I+ G
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELG 285

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           R+   S   ++     ++  N ++DL  + G LE A  L E    + D   W  L+G  T
Sbjct: 286 RQ-VHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYK-DVISWNTLIGGYT 343


>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 692

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 134/334 (40%), Positives = 201/334 (60%), Gaps = 18/334 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++H   +  G    +        +  KCG + ++ + FD + + + V     L  
Sbjct: 331 LEEGKQIHGYSLKAGYECQIYFRKGFDYLKAKCGSLVDARKGFDYLKEPDIV-----LWT 385

Query: 62  YCQTGDFESVIRIFREMEEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            C+            +ME I     +   VLRAC+ LAAL  GK++H Q I+     +V 
Sbjct: 386 SCRM-----------QMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVP 434

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I SAL  +YAKCG ++  + +F +MP R+++TWN+MISG +QNG G +AL +F+++  G 
Sbjct: 435 IGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGT 494

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           TKPD+V+F+ VLSACSHMGL++RG+ +F  M  E+ I P++EHY CMVD+L RAG L E 
Sbjct: 495 TKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIIPRVEHYACMVDILSRAGKLHET 554

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
           +  IE+A   H   LW +LLGAC  +RN  +     +K+MEL      +Y+LL ++Y A+
Sbjct: 555 KEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTAL 614

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           GR +D  ++R LMK  GV K PG SWIE  S+++
Sbjct: 615 GRSDDVERVRRLMKLRGVNKEPGCSWIELKSQVH 648



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G + HA  I      +V V SSL++MY K G + ++ +VFD + ++N+VS + ++ GY  
Sbjct: 132 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 191

Query: 65  T----GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                  +E  + + RE    D F +  VL A      +  GK++HC  ++        +
Sbjct: 192 ERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASV 251

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV +Y KCGC+D A + F     ++ ITW++MI+G+AQ G   EAL +F +M   G 
Sbjct: 252 GNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGN 311

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK 205
           KP   +F+GV++ACS +G ++ G++
Sbjct: 312 KPSEFTFVGVINACSDIGALEEGKQ 336



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 138/277 (49%), Gaps = 10/277 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK +HA+++  G   +V + +SLV++Y KCG + ++  VF+ +  K+ VS + L+ G
Sbjct: 26  LQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLING 85

Query: 62  YCQTGD--FESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           Y Q G   +  V+ +F+ M   +      +F  V  A +       G + H   I+ S  
Sbjct: 86  YSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNF 145

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + S+L+++Y K GC+  A ++F  +P RN ++W ++ISG+A      EA  +F  M
Sbjct: 146 YDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFLLM 205

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
                  D   +  VLSA +   L+  G++ H  ++         +   N +V + G+ G
Sbjct: 206 RREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVG--NALVTMYGKCG 263

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
            L++A    E +  + D + W  ++       ++H A
Sbjct: 264 CLDDAFKTFELSGDKDDIT-WSAMITGYAQAGDSHEA 299



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 127/300 (42%), Gaps = 30/300 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H   +  GL     V ++LV MYGKCG +D++ + F+    K+ ++ SA++ GY Q
Sbjct: 233 GKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQ 292

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD    + +F  M     +   F+F  V+ AC+ + AL  GK++H   ++      +  
Sbjct: 293 AGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYF 352

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
                 L AKCG +  A + F  +   +++ W S                    M     
Sbjct: 353 RKGFDYLKAKCGSLVDARKGFDYLKEPDIVLWTSC------------------RMQMERI 394

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P  ++   VL ACS +  +++G K   + T +Y    ++   + +  +  + G LE+  
Sbjct: 395 MPHELTMASVLRACSSLAALEQG-KQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGN 453

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRA 298
            +      R D   W  ++   +       A  + +++     KPD    YV   NV  A
Sbjct: 454 LVFRRMPSR-DIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPD----YVTFVNVLSA 508



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 2/113 (1%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           SF  +L  C     L+ GK +H Q +R      V + ++LV+LYAKCG +  A  +F  +
Sbjct: 12  SFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESI 71

Query: 145 PVRNLITWNSMISGFAQNGRGEEA--LRIFDDMTEGGTKPDHVSFIGVLSACS 195
             +++++WN +I+G++Q G    +  + +F  M    T P+  +F GV +A S
Sbjct: 72  TNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAAS 124


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/330 (38%), Positives = 201/330 (60%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K +H   +  GL  +V V ++L+  Y KCG +++S  +F+ +  +N VS + ++  
Sbjct: 264 LDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVS 323

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q GD E  + +F  M    +     ++  +LRACA LAAL LG +VHC   +    +D
Sbjct: 324 YVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQD 383

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+D+YAKCG +  A  +F  + +R+ ++WN++I G++ +G G EA+++F+ M E
Sbjct: 384 VAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKE 443

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD ++F+GVLSACS+ G +D G+++F SM ++Y I+P +EHY CMV L+GR+G L+
Sbjct: 444 TKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLD 503

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A   IE+        +W  LLGAC    +  +    A++++EL+P    S+VLL N+Y 
Sbjct: 504 QAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYA 563

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
              RW +   +R  MK  GVKK PG SWIE
Sbjct: 564 RARRWGNVAYVRKHMKRKGVKKEPGLSWIE 593



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 130/259 (50%), Gaps = 6/259 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VH  V+ +G   N  + ++L+D Y   G V  +  VFD++  K+ VS + ++  Y +
Sbjct: 65  GRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAE 124

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              F   +  F +M     + + F+F  VL+AC GL     GK VHC  ++ +  +D+ +
Sbjct: 125 NDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYV 184

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
              L++LY +CG  D A + F  MP  ++I W+ MIS FAQ+G+ E+AL IF  M     
Sbjct: 185 GVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFV 244

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+  +F  VL A + +  +D  +       K   +   +   N ++    + G +E++ 
Sbjct: 245 IPNQFTFSSVLQASADIESLDLSKTIHGHALKA-GLSTDVFVSNALMACYAKCGCIEQSM 303

Query: 241 TLIENADCRHDSSLWEVLL 259
            L E    R+D S W  ++
Sbjct: 304 ELFEALSDRNDVS-WNTII 321



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 157/315 (49%), Gaps = 9/315 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK VH  V+      ++ V   L+++Y +CG  D++ R F  M K + +  S ++  + Q
Sbjct: 166 GKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQ 225

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +G  E  + IF +M       + F+F  VL+A A + +L L K +H   ++     DV +
Sbjct: 226 SGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFV 285

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+  YAKCGC++ + ++F  +  RN ++WN++I  + Q G GE AL +F +M     
Sbjct: 286 SNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQV 345

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +   V++  +L AC+ +  ++ G +    +T +      +   N ++D+  + G +++A 
Sbjct: 346 QATEVTYSSILRACATLAALELGLQ-VHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDAR 404

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPDCHLSYVLLDNVYRA 298
            + +  D R D   W  ++   +       A ++   + E   KPD  L++V + +    
Sbjct: 405 FMFDMLDLR-DKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPD-ELTFVGVLSACSN 462

Query: 299 VGRWNDAFKIRTLMK 313
            GR ++  +  T MK
Sbjct: 463 TGRLDEGKQYFTSMK 477



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 4/174 (2%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDF----ESVIRIFREMEEIDLFSFGIVLRACAGLAA 98
           VFD+M ++N+VS   L+ GY Q+  F    E   R+  E  E++ F F  VL+    +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 99  LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
             LG+ VH   ++     +  I +AL+D Y+  GCV  A ++F ++  +++++W  MI+ 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           +A+N    EAL  F  M   G KP++ +F GVL AC  +   D G+    S+ K
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLK 175


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/332 (38%), Positives = 196/332 (59%), Gaps = 7/332 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H + IT+G      VE++LVDMY KC    E+ ++FD +  K++V  +A++  
Sbjct: 358 LRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISA 417

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  I +F +M       D  +F  +LRACA LA++ LG+++H   IR     +
Sbjct: 418 YVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSN 477

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   SAL+D YAKCGC+  A + F +MP RN ++WN++IS +AQNG  +  L  F  M +
Sbjct: 478 VYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQ 537

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD VSF+ VLSACSH G ++    HF SMT+ Y + PK EHY  MVD+L R G  +
Sbjct: 538 SGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFD 597

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPDCHLSYVLLDNV 295
           EAE L+          +W  +L +C   +N  +A++ A ++  ME   D    Y+ + N+
Sbjct: 598 EAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDA-APYINMSNI 656

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           Y   G+W++  K++  M+  GV+K+P  SW+E
Sbjct: 657 YAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVE 688



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 127/257 (49%), Gaps = 13/257 (5%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G++VH  V+      NV V ++L+D Y K   VDE  ++F +M + + +S + ++  Y
Sbjct: 258 KFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSY 317

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G F+    +FR+++        F F  +L        LR+G+++HCQ I      + 
Sbjct: 318 AWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFES 377

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            +E+ALVD+YAKC     A +IF  +  ++ + W +MIS + Q G+ EE + +F DM   
Sbjct: 378 RVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRT 437

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRK------HFASMTKEYRIKPKIEHY---NCMVDL 229
           G   D  +F  +L AC+++  I  GR+          M+  Y     ++ Y    CM D 
Sbjct: 438 GVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDA 497

Query: 230 LGRAGLLEEAETLIENA 246
           +   G + E  ++  NA
Sbjct: 498 IKSFGEMPERNSVSWNA 514



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 136/260 (52%), Gaps = 8/260 (3%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++H  VI LG   N++V +SLVD Y K   +  + ++F  ML K++V+ ++L+ GY   G
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEG 220

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             E  I +F E+    +    F+F  +L A  GL   + G++VH   ++ +   +V + +
Sbjct: 221 LNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGN 280

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           AL+D Y+K   VD   ++F +MP  + I++N +I+ +A NG+ +E+  +F  +       
Sbjct: 281 ALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDR 340

Query: 183 DHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
               F  +LS  +    +  GR+ H  ++T     + ++E  N +VD+  +    +EA+ 
Sbjct: 341 RQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVE--NALVDMYAKCNGDKEAQK 398

Query: 242 LIENADCRHDSSLWEVLLGA 261
           + +N  C+  +  W  ++ A
Sbjct: 399 IFDNIACK-STVPWTAMISA 417



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 2   LKQGKEVHA-KVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L++G  VHA +V       N +  + ++  + K G + ++  +FD M+++ +VS + L+ 
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIG 113

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q+   +   R++ +M     E D  +   +L     L    +  ++H   I+     
Sbjct: 114 GYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEY 173

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++++ ++LVD Y K  C+  A Q+F  M  ++ +T+NS+++G++  G  EEA+ +F ++ 
Sbjct: 174 NLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELH 233

Query: 177 EGGTKPDHVSFIGVLSACSHMGLID 201
             G KP   +F  +LSA   +GL D
Sbjct: 234 NSGIKPSDFTFAALLSAA--VGLDD 256



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 34/126 (26%)

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS--------------------------- 157
           V+ + + G +  AHQ+F QMP +N I+ N MIS                           
Sbjct: 50  VNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWT 109

Query: 158 ----GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM---GLIDRGRKHFASM 210
               G+ Q+ + +EA R++ DM  GG +PD+V+ + +LS    +    +I +   H   +
Sbjct: 110 ILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKL 169

Query: 211 TKEYRI 216
             EY +
Sbjct: 170 GYEYNL 175


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 213/362 (58%), Gaps = 37/362 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD------------------- 45
           G+++H + ++  L  +V V +SL+ MY  CG V ++ ++FD                   
Sbjct: 141 GRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVK 200

Query: 46  ------------KMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
                       +M ++N +S + L+ GY QT      I +FR+M+    E D  +   V
Sbjct: 201 VGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAV 260

Query: 90  LRACAGLAALRLGKEVHCQYIRRSG-CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           L ACA L AL LG+ +H  YI + G C+ V + +AL+D+YAK G +  A ++F  M  ++
Sbjct: 261 LSACADLGALELGEWIH-NYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKS 319

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +ITW+++I+  A +G G EA+ +F  M +   +P+ V+F+ +LSACSH+G++D GR +F 
Sbjct: 320 VITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFD 379

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            M   Y+I+PKIEHY CM+DLL RAG L+EA+ L+ +     ++ +W  LL A  T R+A
Sbjct: 380 QMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDA 439

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            +A+   K + +L+P    +YVLL N Y A+G+WN++  +R LM+ +GVKK PG S IE 
Sbjct: 440 ELAQLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEI 499

Query: 329 NS 330
           N+
Sbjct: 500 NN 501



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 123/274 (44%), Gaps = 36/274 (13%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++H  ++   L  + +  S  +D     GL   +  +F      +    +  ++   +T 
Sbjct: 42  QIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTS 101

Query: 67  DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
              + I ++  +       D +S   VL+A   L+A+ +G+++H Q +  +   DV + +
Sbjct: 102 SPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVAT 161

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI-------------------------- 156
           +L+ +Y+ CG V  A ++F  +  +++  WN+M+                          
Sbjct: 162 SLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVIS 221

Query: 157 -----SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
                +G+AQ  R  EA+ +F  M     +PD ++ + VLSAC+ +G ++ G +   +  
Sbjct: 222 WTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELG-EWIHNYI 280

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
           +++ +   +  YN ++D+  ++G +  A  + EN
Sbjct: 281 EKHGLCRIVSLYNALIDMYAKSGNIRRALEVFEN 314



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 22/171 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +H  +   GLC  V + ++L+DMY K G +  +  VF+ M +K+ ++ S ++  
Sbjct: 270 LELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAA 329

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGK----EVHCQY---- 109
               G     I +F  ME+  +     +F  +L AC+ +  + +G+    ++   Y    
Sbjct: 330 LALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEP 389

Query: 110 -IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            I   GC        ++DL A+ G +  A ++   MP   N + W S+++ 
Sbjct: 390 KIEHYGC--------MIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAA 432



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 41/217 (18%), Positives = 88/217 (40%), Gaps = 9/217 (4%)

Query: 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           ++H   + R+  +D +  S  +D     G   +A  IF      +L  +N+ I   ++  
Sbjct: 42  QIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTS 101

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
               A+ ++  +   G +PD  S   VL A   +  ++ GR+   + T    +   +   
Sbjct: 102 SPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQ-IHTQTVSSALDMDVNVA 160

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE-RVAKKIMELK 282
             ++ +    G + +A  L +    + D +LW  ++          V E + A+K+    
Sbjct: 161 TSLIQMYSSCGFVSDARKLFDFVGFK-DVALWNAMVAGYVK-----VGELKSARKVFNEM 214

Query: 283 PDCH-LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
           P  + +S+  L   Y    R ++A ++   M+   V+
Sbjct: 215 PQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVE 251


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/332 (38%), Positives = 206/332 (62%), Gaps = 5/332 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA V   G   N+ V +S++DMY +C    E++R F +M +++ ++ + L+ GY +
Sbjct: 214 GEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYER 273

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +   ES + +F  ME      + F+F  ++ ACA LA L  G+++H + IRR    ++ +
Sbjct: 274 SNPTES-LYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLAL 332

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+Y+KCG +  +HQ+F  M  R+L++W +M+ G+  +G GEEA+ +FD M   G 
Sbjct: 333 SNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGI 392

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD V F+ +LSACSH GL+D G ++F  M  +Y I P  E Y C+VDLLGRAG +EEA 
Sbjct: 393 RPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAY 452

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LIE+   + D  +W   LGAC      ++ +  A +I++L+P    +YV+L N+Y A G
Sbjct: 453 ELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADG 512

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +W +  ++R LMK  G KK  G+SW+E  + +
Sbjct: 513 KWGEFARLRKLMKRMGNKKETGRSWVEVGNHV 544



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 151/289 (52%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQ 60
           L  G+ VH   I  GL G + V+++L+DMY  C + +D++  VF  +  KN VS + L+ 
Sbjct: 109 LSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIA 168

Query: 61  GYCQTGDFESVIRIFREM--EEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY    D    +R+FR+M  EE++L  FSF I +RAC  + +   G+++H    +     
Sbjct: 169 GYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFES 228

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ + ++++D+Y +C C   A++ F +M  R+LITWN++I+G+ +     E+L +F  M 
Sbjct: 229 NLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMME 287

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+  +F  +++AC+ +  ++ G++    + +   +   +   N ++D+  + G +
Sbjct: 288 SEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRR-GLDGNLALSNALIDMYSKCGNI 346

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPD 284
            ++  +      R   S   +++G  T        E   K +   ++PD
Sbjct: 347 ADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPD 395



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 9/218 (4%)

Query: 50  KNSVSSSALLQGYCQTGDFESVIRIFREM--EEIDLFSFGI--VLRACAGLAALRLGKEV 105
           K  +  + ++ GY    +      +F EM  EE+D  +F I  VL+AC G+  L  G+ V
Sbjct: 56  KGLIGEALMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLV 115

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCV--DFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           H   I+      + +++AL+D+YA C CV  D A  +F  + ++N ++W ++I+G+    
Sbjct: 116 HGLAIKHGLDGFIYVDNALMDMYATC-CVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRD 174

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
            G   LR+F  M     + +  SF   + AC+ +G    G +  A++TK +  +  +   
Sbjct: 175 DGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTK-HGFESNLPVM 233

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           N ++D+  R     EA       + R D   W  L+  
Sbjct: 234 NSILDMYCRCSCFSEANRYFYEMNQR-DLITWNTLIAG 270



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 11/154 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H ++I  GL GN+ + ++L+DMY KCG + +SH+VF  M +++ VS +A++ G
Sbjct: 311 LNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIG 370

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRAC--AGLA--ALRLGKEVHCQYIRRS 113
           Y   G  E  + +F +M       D   F  +L AC  AGL    LR  K +   Y   +
Sbjct: 371 YGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDY---N 427

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
              D  I   +VDL  + G V+ A+++   MP +
Sbjct: 428 ISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFK 461


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 204/327 (62%), Gaps = 5/327 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QGK+VH+ ++      ++ V SSL+DMY K   + E+ RVFD + +++ VS +A++ GY 
Sbjct: 129 QGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYA 188

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G  E  + +FR++     + +  +F  ++ A +GLA+L  GK+VH   +R+     V 
Sbjct: 189 QKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVA 248

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           ++++L+D+Y+KCG + ++ ++F  M  R++++WN+M+ G+ ++G G E + +F D+ +  
Sbjct: 249 LQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE- 307

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD V+ + VLS CSH GL+D G   F ++ KE        HY C++DLLGR+G LE+A
Sbjct: 308 VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKA 367

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
             LIEN       S+W  LLGAC    N HV E VA+K++E++P+   +YV+L N+Y A 
Sbjct: 368 LNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAA 427

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           G W D FK+R LM    V K PG+SWI
Sbjct: 428 GMWKDVFKVRKLMLEKTVTKEPGQSWI 454



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 155/289 (53%), Gaps = 9/289 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G++VHA++IT      V + + LV MY +CG +D++  V D+M +++ VS + ++ G
Sbjct: 26  LWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISG 85

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y QT      + +F +M       + ++   VL +C+G  ++  GK+VH   ++ +    
Sbjct: 86  YSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESH 145

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+L+D+YAK   +  A ++F  +P R++++  ++ISG+AQ G  EEAL +F  +  
Sbjct: 146 MFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYS 205

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G + +HV+F  +++A S +  +D G++ H   + KE      ++  N ++D+  + G L
Sbjct: 206 EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQ--NSLIDMYSKCGKL 263

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI-MELKPD 284
             +  + +N   R   S W  +L         H    + K +  E+KPD
Sbjct: 264 LYSRRVFDNMLERSVVS-WNAMLMGYGRHGLGHEVISLFKDLHKEVKPD 311



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 68/123 (55%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           + AC    AL  G++VH + I       V + + LV +Y +CG +D A  +  +MP R++
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ++W +MISG++Q  R  EAL +F  M   G  P+  +   VL++CS    I +G++  + 
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136

Query: 210 MTK 212
           + K
Sbjct: 137 LVK 139


>gi|297720639|ref|NP_001172681.1| Os01g0884800 [Oryza sativa Japonica Group]
 gi|20161229|dbj|BAB90156.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|255673935|dbj|BAH91411.1| Os01g0884800 [Oryza sativa Japonica Group]
          Length = 517

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/309 (41%), Positives = 186/309 (60%), Gaps = 5/309 (1%)

Query: 23  VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-- 80
           V ++LVD Y K   +  +  VFD+M +++ V+ ++L+ G  + G     +R +R+M    
Sbjct: 80  VANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRAYRDMVAAG 139

Query: 81  --IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
              D F+   VL +CAG  AL LG+ VH   +R      + + ++LV +YAK G +  A 
Sbjct: 140 VATDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLVSMYAKTGSLRDAR 199

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +F  M  R  ITW ++I G+AQNGRG E+L ++ DM   G +PD+V+F+G+L ACSH G
Sbjct: 200 TVFDAMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAG 259

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH-DSSLWEV 257
           L+D GR HF SM  E+ I P  +HY CMVDLLGRAG L EA  L++ +     D+++W+ 
Sbjct: 260 LLDAGRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDRSPAAELDATVWKA 319

Query: 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
           LL AC T RNA +AER A  +  L P   + YV+L N+Y    RW D  ++R LM+  G+
Sbjct: 320 LLAACRTHRNAALAERAAGMVWRLDPTDAMPYVMLSNLYSRARRWGDVARVRALMRSRGI 379

Query: 318 KKMPGKSWI 326
            K PG SW+
Sbjct: 380 SKEPGCSWV 388



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 9/164 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ VHA  +  G    + V +SLV MY K G + ++  VFD M  + +++ +AL+ G
Sbjct: 160 LELGRSVHAAAVRSGHEPFLSVGNSLVSMYAKTGSLRDARTVFDAMRSRCAITWTALIVG 219

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS-GCK 116
           Y Q G     + ++ +M       D  +F  +L AC+    L  G+  H Q ++   G  
Sbjct: 220 YAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAGLLDAGR-AHFQSMQSEHGIS 278

Query: 117 DVIIESA-LVDLYAKCGCVDFAHQIFLQMPVRNL--ITWNSMIS 157
                 A +VDL  + G +  A  +  + P   L    W ++++
Sbjct: 279 PGPDHYACMVDLLGRAGRLGEAVDLLDRSPAAELDATVWKALLA 322


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/332 (38%), Positives = 206/332 (62%), Gaps = 5/332 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA V   G   N+ V +S++DMY +C    E++R F +M +++ ++ + L+ GY +
Sbjct: 230 GEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYER 289

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +   ES + +F  ME      + F+F  ++ ACA LA L  G+++H + IRR    ++ +
Sbjct: 290 SNPTES-LYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLAL 348

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+Y+KCG +  +HQ+F  M  R+L++W +M+ G+  +G GEEA+ +FD M   G 
Sbjct: 349 SNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGI 408

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD V F+ +LSACSH GL+D G ++F  M  +Y I P  E Y C+VDLLGRAG +EEA 
Sbjct: 409 RPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAY 468

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LIE+   + D  +W   LGAC      ++ +  A +I++L+P    +YV+L N+Y A G
Sbjct: 469 ELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADG 528

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +W +  ++R LMK  G KK  G+SW+E  + +
Sbjct: 529 KWGEFARLRKLMKRMGNKKETGRSWVEVGNHV 560



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 151/289 (52%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQ 60
           L  G+ VH   I  GL G + V+++L+DMY  C + +D++  VF  +  KN VS + L+ 
Sbjct: 125 LSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIA 184

Query: 61  GYCQTGDFESVIRIFREM--EEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY    D    +R+FR+M  EE++L  FSF I +RAC  + +   G+++H    +     
Sbjct: 185 GYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFES 244

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ + ++++D+Y +C C   A++ F +M  R+LITWN++I+G+ +     E+L +F  M 
Sbjct: 245 NLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMME 303

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+  +F  +++AC+ +  ++ G++    + +   +   +   N ++D+  + G +
Sbjct: 304 SEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRR-GLDGNLALSNALIDMYSKCGNI 362

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPD 284
            ++  +      R   S   +++G  T        E   K +   ++PD
Sbjct: 363 ADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPD 411



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 125/249 (50%), Gaps = 9/249 (3%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
           G  V+ ++L+  Y   GL+ E+  +FD+M +++ V+ + ++ GY    +      +F EM
Sbjct: 41  GPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEM 100

Query: 79  --EEIDLFSFGI--VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
             EE+D  +F I  VL+AC G+  L  G+ VH   I+      + +++AL+D+YA C CV
Sbjct: 101 MNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATC-CV 159

Query: 135 --DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
             D A  +F  + ++N ++W ++I+G+     G   LR+F  M     + +  SF   + 
Sbjct: 160 SMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVR 219

Query: 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           AC+ +G    G +  A++TK +  +  +   N ++D+  R     EA       + R D 
Sbjct: 220 ACTSIGSHTFGEQLHAAVTK-HGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQR-DL 277

Query: 253 SLWEVLLGA 261
             W  L+  
Sbjct: 278 ITWNTLIAG 286



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 11/154 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H ++I  GL GN+ + ++L+DMY KCG + +SH+VF  M +++ VS +A++ G
Sbjct: 327 LNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIG 386

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRAC--AGLA--ALRLGKEVHCQYIRRS 113
           Y   G  E  + +F +M       D   F  +L AC  AGL    LR  K +   Y   +
Sbjct: 387 YGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDY---N 443

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
              D  I   +VDL  + G V+ A+++   MP +
Sbjct: 444 ISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFK 477


>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
          Length = 620

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 206/333 (61%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ V     + G+  + +V S+LV MY KCG + E+ RVFD ++ K+ V+ +A++ GY Q
Sbjct: 249 GRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQ 308

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     I +F  M++     D  +   VL AC+ + AL LG E+      R    +V +
Sbjct: 309 NGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYV 368

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGG 179
            +ALVD+YAKCG +D A ++F +M  +N+ +WN++I G A NG+G+EA++ F+ M  E G
Sbjct: 369 GTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDG 428

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD ++FIGVLSAC H GL+  G++ F S+T E++I PKIEHY+CMVDLL R+G LEE 
Sbjct: 429 LKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCMVDLLARSGHLEEV 488

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
              IE    + D+ +   LL AC   +N  + ERV  +I++L+P    +YV+   +Y + 
Sbjct: 489 WDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASS 548

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           GR +D+ K+R  M+  GV K PG SW+E + K+
Sbjct: 549 GRLDDSAKMRGPMRERGVNKTPGCSWVEISGKV 581



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 132/242 (54%), Gaps = 13/242 (5%)

Query: 26  SLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----- 80
           SL+ +Y        + +VF+ +  ++ VS +A+++ Y + G    V R+ R+M +     
Sbjct: 168 SLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVV 227

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQ 139
            +  +  +VL AC     L LG+ V  ++ + +G + D ++ SALV +Y KCG +  A +
Sbjct: 228 PNAVTLAVVLAACRDEGDLVLGRWVE-EWSKSAGMETDSLVGSALVGMYEKCGEIAEARR 286

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F  +  ++++ WN+MI+G+AQNG   EA+ +F +M + G  PD ++  GVLSACS +G 
Sbjct: 287 VFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGA 346

Query: 200 IDRGRK--HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
           ++ G +   +AS    Y     +     +VD+  + G L++A  +     C++ +S W  
Sbjct: 347 LELGSELDGYASCRGLYN---NVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVAS-WNA 402

Query: 258 LL 259
           L+
Sbjct: 403 LI 404



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 45/223 (20%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G E+       GL  NV V ++LVDMY KCG +D++  VF KM  KN  S +AL+ G
Sbjct: 347 LELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICG 406

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGK------------- 103
               G  +  I+ F  M      + D  +F  VL AC     ++ GK             
Sbjct: 407 LAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQII 466

Query: 104 ------EVHCQYIRRSG--------------CKDVIIESALVDLYAKCGCVDFAHQI--- 140
                       + RSG                D ++  AL+    KC  V+   ++   
Sbjct: 467 PKIEHYSCMVDLLARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINR 526

Query: 141 FLQMPVRNLITWNSMISG--FAQNGRGEEALRIFDDMTEGGTK 181
            +Q+   N  +WN ++S   +A +GR +++ ++   M E G  
Sbjct: 527 IIQLEPTN--SWNYVVSSKIYASSGRLDDSAKMRGPMRERGVN 567


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 204/337 (60%), Gaps = 12/337 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H   + +G    V V +SL+DMYGKC  ++++  +F+ M +K+  S ++++  
Sbjct: 253 LNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSV 312

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG--- 114
           + Q GD +  +R+   M     + DL +   VL AC+ LAAL  G+E+H  Y+  SG   
Sbjct: 313 HEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIH-GYMIVSGLGK 371

Query: 115 ----CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
                 DV++++A++D+YAKCG +  AH +F +M  +++ +WN MI G+  +G G EAL 
Sbjct: 372 DGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALE 431

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F  M E   KPD V+F+GVLSACSH G + +GR     M  +Y + P IEHY C++D+L
Sbjct: 432 MFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDML 491

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYV 290
           GRAG L+EA  L        +  +W  LL AC   ++A +AE  A+++ EL+P+   SYV
Sbjct: 492 GRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYV 551

Query: 291 LLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           L+ NVY AVGR+ +  ++R  M+   V+K PG SWIE
Sbjct: 552 LMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIE 588



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 148/290 (51%), Gaps = 12/290 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++H  +   GL  +V + S+LV+ Y K GL++ +   F+++  ++ V  +A++ GY Q 
Sbjct: 156 KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G FE V+  FR M +  +    F+   VL   A +  L  G+ +H   ++      V + 
Sbjct: 216 GQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++L+D+Y KC C++ A +IF  M  +++ +WNS++S   Q G  +  LR+ D M   G +
Sbjct: 276 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQ 335

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMT-----KEYRIKPKIEHYNCMVDLLGRAGLL 236
           PD V+   VL ACSH+  +  GR+    M      K+ +    +   N ++D+  + G +
Sbjct: 336 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPD 284
            +A  + E    + D + W +++         + A  +  ++  ++LKPD
Sbjct: 396 RDAHLVFERMSNK-DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPD 444



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 129/249 (51%), Gaps = 11/249 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVF-DKMLKKNSVSSSALLQ 60
           L +GKE+H+ ++  G   + +  +SL++MY KC  ++ +  +F D   + N  + +A++ 
Sbjct: 53  LSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIIS 112

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+   G  E     +++M       D F+F   ++AC  +  +   K++H    +     
Sbjct: 113 GFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLEL 169

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV I SALV+ Y K G ++ A   F ++P+R+++ WN+M++G+AQ G+ E  L  F  M 
Sbjct: 170 DVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMN 229

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           +    P   +  GVLS  + MG ++ GR  H  +M   Y     +   N ++D+ G+   
Sbjct: 230 DESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS--NSLIDMYGKCKC 287

Query: 236 LEEAETLIE 244
           +E+A  + E
Sbjct: 288 IEDALEIFE 296



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-- 147
           L+A A    L  GKE+H   +        +  ++L+++Y+KC  ++FA  IF   P    
Sbjct: 44  LQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSD-PTHEI 102

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           N+  +N++ISGF  NG  EE    +  M   G  PD  +F   + AC  + +++  + H 
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVLEIKKIH- 159

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             +  ++ ++  +   + +V+   + GL+E A+   E    R D  LW  ++
Sbjct: 160 -GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMV 209


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/337 (39%), Positives = 204/337 (60%), Gaps = 12/337 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H   + +G    V V +SL+DMYGKC  ++++  +F+ M +K+  S +++   
Sbjct: 173 LNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSV 232

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG--- 114
           + Q GD +  +R+   M     + DL +   VL AC+ LAAL  G+E+H  Y+  SG   
Sbjct: 233 HEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIH-GYMIVSGLGK 291

Query: 115 ----CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
                 DV++++A++D+YAKCG +  AH +F +M  +++ +WN MI G+  +G G EAL 
Sbjct: 292 DGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALE 351

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F  M E   KPD V+F+GVLSACSH G + +GR   A M  +Y + P IEHY C++D+L
Sbjct: 352 MFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDML 411

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYV 290
           GRAG L+EA  L        +  +W  LL AC   ++A +AE  A+++ EL+P+   SYV
Sbjct: 412 GRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYV 471

Query: 291 LLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           L+ NVY AVGR+ +  ++R  M+   V+K PG SWIE
Sbjct: 472 LMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIE 508



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 146/290 (50%), Gaps = 12/290 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++H  +   GL  +V + S+LV+ Y K GL++ +   F+++  ++ V  +A++ GY Q 
Sbjct: 76  KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 135

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G FE V+  FR M +  +    F+   +L   A +  L  G+ +H   ++      V + 
Sbjct: 136 GQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 195

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++L+D+Y KC C++ A +IF  M  +++ +WNS+ S   Q G  +  LR+ D M   G +
Sbjct: 196 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQ 255

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMT-----KEYRIKPKIEHYNCMVDLLGRAGLL 236
           PD V+   VL ACSH+  +  GR+    M      K+ +    +   N ++D+  + G +
Sbjct: 256 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 315

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            +A  + E    + D + W +++         + A  +  ++ E  LKPD
Sbjct: 316 RDAHLVFERMXNK-DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPD 364



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 8/135 (5%)

Query: 127 LYAKCGCVDFAHQIFLQMPVR--NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +Y+KC  ++FA  IF   P    N+  +N++ISGF  NG  EE    +  M   G  PD 
Sbjct: 1   MYSKCNQMNFALSIFSD-PTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDK 59

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
            +F   + AC  + +++  + H   +  ++ ++  +   + +V+   + GL+E A+   E
Sbjct: 60  FTFPCAIKAC--LDVLEIKKIH--GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFE 115

Query: 245 NADCRHDSSLWEVLL 259
               R D  LW  ++
Sbjct: 116 ELPIR-DVVLWNAMV 129


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 205/333 (61%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VHA+ +   L  NV V S+LVDMYGKC    ++H  F+ + +KN VS +A++  Y Q
Sbjct: 228 GCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQ 287

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              FE  +++F ++E      + F++ + L +CAGLAAL+ G  +    ++      + +
Sbjct: 288 NERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGALSV 347

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+++Y+K G +  A ++FL MP R++++WNS+I G+A +G   EA+ +F DM     
Sbjct: 348 CNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEI 407

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P +V+F+GVL AC+ +GL+D G  +   M KE  IKP  EHY CMV LL RAG L+EAE
Sbjct: 408 VPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAE 467

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I +     D   W+ LL +C  ++N  +  RVA++I++LKP+   +YVLL N+Y    
Sbjct: 468 QFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLSNMYAKAN 527

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           RW+   K+R LM+  GV+K PG SWI+  S+++
Sbjct: 528 RWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVH 560



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 142/260 (54%), Gaps = 5/260 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++ H   +  GL  +  V ++++ MY +C  V+++ +VF+ +   +  + ++++ G+  
Sbjct: 127 GRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLD 186

Query: 65  TGDFESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G+F+  IRI R    E+E+ D  S+  VL  CA    L LG +VH Q ++R   ++V +
Sbjct: 187 LGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYV 246

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVD+Y KC C   AH  F  +P +N+++W ++++ + QN R E+AL++F D+   G 
Sbjct: 247 GSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGV 306

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +P+  ++   L++C+ +  +  G    AS  K       +   N ++++  ++G + +A 
Sbjct: 307 RPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGA-LSVCNALMNMYSKSGSIHDAW 365

Query: 241 TLIENADCRHDSSLWEVLLG 260
            +  +   R   S   V++G
Sbjct: 366 RVFLSMPWRDVVSWNSVIIG 385



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 125/245 (51%), Gaps = 5/245 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +HA++I      +V+  + L+  YGKCG +  + ++FD M  +N+VS + L+ G
Sbjct: 27  LCTGKAIHAQMIRAAHF-DVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSG 85

Query: 62  YCQTGDFESVIRIFREME-EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD-VI 119
           Y   G     + + +  +  ++ +     L A A + +  +G++ H  Y  +SG ++   
Sbjct: 86  YASAGRHSDALALLKAADFSLNEYVLSTALSAAAHVRSYGMGRQCH-GYAVKSGLQEHPY 144

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +A++ +Y +C  V+ A ++F  +   ++  +NSMI+GF   G  + ++RI   M    
Sbjct: 145 VCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEV 204

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            + DHVS++ VL  C+    +  G +  A   K  R++  +   + +VD+ G+     +A
Sbjct: 205 EQWDHVSYVAVLGHCASTKELLLGCQVHAQALKR-RLEQNVYVGSALVDMYGKCDCARDA 263

Query: 240 ETLIE 244
            +  E
Sbjct: 264 HSAFE 268



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
           GK +H Q IR +   DVI  + L+  Y KCG +  A Q+F  MP RN ++ N ++SG+A 
Sbjct: 30  GKAIHAQMIRAAHF-DVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYAS 88

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
            GR  +AL +   +       +       LSA +H+     GR+        Y +K  ++
Sbjct: 89  AGRHSDALAL---LKAADFSLNEYVLSTALSAAAHVRSYGMGRQ-----CHGYAVKSGLQ 140

Query: 222 HY----NCMVDLLGRAGLLEEAETLIEN 245
            +    N ++ +  +   +E+A  + EN
Sbjct: 141 EHPYVCNAVLHMYCQCAHVEDAVKVFEN 168



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 6/162 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G  + A  +  G  G + V ++L++MY K G + ++ RVF  M  ++ VS ++++ G
Sbjct: 326 LKNGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIG 385

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     + +F +M   EI     +F  VL ACA L  +  G       ++  G K 
Sbjct: 386 YAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKP 445

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMIS 157
                + +V L  + G +D A Q  L   +  +++ W S++S
Sbjct: 446 GREHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLS 487


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 134/335 (40%), Positives = 209/335 (62%), Gaps = 8/335 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G  +H   + LGL  N+ +  +L++MY +C  ++ +  VFD+M +   VS +A++ G
Sbjct: 146 LREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITG 205

Query: 62  YCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC- 115
           Y ++      + +FRE+     E  D+    +++ +CA L AL LGK +H +Y+++ G  
Sbjct: 206 YARSSQPNEALSLFRELQASNIEPTDVTMLSVIM-SCALLGALDLGKWIH-EYVKKKGFD 263

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K V + +AL+D++AKCG +  A  IF  M VR+   W++MI  FA +G G +A+ +F++M
Sbjct: 264 KYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEM 323

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G +PD ++F+G+L ACSH GL+++GR +F SM+K Y I P I+HY CMVDLLGRAG 
Sbjct: 324 KREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGH 383

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L+EA   ++  + +    LW  LL AC+T  N  +A+RV ++I EL       YV+L N+
Sbjct: 384 LDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNL 443

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           Y  VGRW D   +R LMK  GV K+PG S +E N+
Sbjct: 444 YARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNN 478



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 140/274 (51%), Gaps = 17/274 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVD---MYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           L + K++ A  I   L  ++ V + L++   +      +D +H +FD++L K+ +  + +
Sbjct: 42  LNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIM 101

Query: 59  LQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
            +GY ++        +F E+       D ++F  +L+ACA   ALR G  +HC  ++   
Sbjct: 102 ARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGL 161

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             ++ I   L+++YA+C  ++ A  +F +M    ++++N++I+G+A++ +  EAL +F +
Sbjct: 162 NHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRE 221

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLL 230
           +     +P  V+ + V+ +C+ +G +D G+        EY  K   + Y      ++D+ 
Sbjct: 222 LQASNIEPTDVTMLSVIMSCALLGALDLGK-----WIHEYVKKKGFDKYVKVNTALIDMF 276

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
            + G L +A ++ E    R D+  W  ++ A  T
Sbjct: 277 AKCGSLTDAISIFEGMRVR-DTQAWSAMIVAFAT 309


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 133/350 (38%), Positives = 206/350 (58%), Gaps = 37/350 (10%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y +CG +DE+  +F +M+KK+ VS + ++  Y Q G  ++ I+IF EM+
Sbjct: 356 DVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMK 415

Query: 80  EIDLFS-----------------------------------FGIVLRACAGLAALRLGKE 104
           E ++ S                                   F   L +CA LAAL++GK+
Sbjct: 416 EKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQ 475

Query: 105 VHCQYIRRSG-CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           +H Q + +SG   D+ + +AL+ +YAKCG +  A  +F  +   ++++WNS+I+ +A NG
Sbjct: 476 LH-QLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNG 534

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
            G EAL++F  M   G  PD V+F+G+LSACSH+GLID+G K F  M + Y I+P  EHY
Sbjct: 535 NGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHY 594

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283
            CMVDLLGRAG LEEA  L+       ++ +W  LLGAC    N  +A+  A+K++E +P
Sbjct: 595 ACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEP 654

Query: 284 DCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
               +YVLL N+    GRW++  ++R LMK  G +K PG SWIE  ++++
Sbjct: 655 HKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVH 704



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 135/261 (51%), Gaps = 10/261 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N +  +++++ Y + G +DE+ ++ ++M  +N  + +A++ GY Q    +   +IF ++ 
Sbjct: 294 NSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQIS 353

Query: 80  EIDLFSFGIVLRACAGLAAL-RLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
             D+  +  ++   AG +   R+ + +H    ++   KD++  + +V  YA+ G +D A 
Sbjct: 354 IRDVVCWNTMI---AGYSQCGRMDEALHL--FKQMVKKDIVSWNTMVASYAQVGQMDAAI 408

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           +IF +M  +N+++WNS+ISG  QNG   +AL+ F  M   G KPD  +F   LS+C+H+ 
Sbjct: 409 KIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLA 468

Query: 199 LIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
            +  G++ H   M   Y     +   N ++ +  + G +  AE L ++ D   D   W  
Sbjct: 469 ALQVGKQLHQLVMKSGYATDLFVS--NALITMYAKCGSISSAELLFKDID-HFDVVSWNS 525

Query: 258 LLGACTTFRNAHVAERVAKKI 278
           L+ A     N   A ++  K+
Sbjct: 526 LIAAYALNGNGREALKLFHKM 546



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 141/300 (47%), Gaps = 20/300 (6%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  +S++  + K G + ++ ++FD M ++N VS ++++  Y      E   ++F +M 
Sbjct: 45  NTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMP 104

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVH--CQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
             DL+S+ +++        L   + +     Y     C +     A+V  YAK    D A
Sbjct: 105 TRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCN-----AMVAGYAKNRQFDEA 159

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
            ++F  MP ++L++WNSM++G+ +NG     L+ F++M E     D VS+  ++     +
Sbjct: 160 RRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAER----DVVSWNLMVDGFVEV 215

Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
           G ++   + F  +       P    +  M+    R G + EA  L +    R+  + W  
Sbjct: 216 GDLNSSWEFFEKIP-----NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVA-WNA 269

Query: 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
           ++ A    +N HV E ++   ME+     +S+  + N Y  +G+ ++A ++   M Y  V
Sbjct: 270 MIAAYV--QNCHVDEAIS-LFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNV 326



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 22/248 (8%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  + +VD + + G ++ S   F+K+   N+VS   +L G+ + G      R+F +M 
Sbjct: 201 DVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMP 260

Query: 80  EIDLFSFGIVLRA----CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
             ++ ++  ++ A    C    A+ L  E+          K+ I  + +++ Y + G +D
Sbjct: 261 IRNVVAWNAMIAAYVQNCHVDEAISLFMEM--------PEKNSISWTTVINGYVRMGKLD 312

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A Q+  QMP RN+    +MISG+ QN R ++A +IF+ +    +  D V +  +++  S
Sbjct: 313 EARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQI----SIRDVVCWNTMIAGYS 368

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
             G +D     F  M     +K  I  +N MV    + G ++ A  + E    ++  S W
Sbjct: 369 QCGRMDEALHLFKQM-----VKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVS-W 422

Query: 256 EVLLGACT 263
             L+   T
Sbjct: 423 NSLISGLT 430



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K+ +  ++++  +AK G +  A Q+F  MP RN+++WNSMI+ +  N R EEA ++FD M
Sbjct: 44  KNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKM 103

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                  D  S+  +++  +  G + + R  F  +   Y+  P     N MV    +   
Sbjct: 104 ----PTRDLYSWTLMITCYTRNGELAKARNLFNLLP--YKWNPVC--CNAMVAGYAKNRQ 155

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACT 263
            +EA  L +    + D   W  +L   T
Sbjct: 156 FDEARRLFDAMPAK-DLVSWNSMLTGYT 182



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 80/161 (49%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H  V+  G   ++ V ++L+ MY KCG +  +  +F  +   + VS ++L+  
Sbjct: 470 LQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAA 529

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G+    +++F +ME      D  +F  +L AC+ +  +  G ++    ++    + 
Sbjct: 530 YALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEP 589

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           +    A +VDL  + G ++ A Q+   M +  N   W +++
Sbjct: 590 LAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALL 630



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 17/138 (12%)

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
           H  Y+ R   K        +    K G +D A ++F  M  +N +T NSMIS FA+NGR 
Sbjct: 11  HGSYVFRHNLK--------ITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRI 62

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225
            +A ++FD M +       VS+  +++A  H   ++  R+ F  M         +  +  
Sbjct: 63  SDARQLFDGMPQRNI----VSWNSMIAAYLHNDRVEEARQLFDKMPTR-----DLYSWTL 113

Query: 226 MVDLLGRAGLLEEAETLI 243
           M+    R G L +A  L 
Sbjct: 114 MITCYTRNGELAKARNLF 131


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 135/329 (41%), Positives = 204/329 (62%), Gaps = 6/329 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K +H  +   G   +VV+ + L+D+Y KCG V  +  +FDK  +KN  S + ++ G+ + 
Sbjct: 207 KRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVED 266

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVII 120
            ++E  + +FREM+    + D  +   +L AC  L AL LGK +H  YI++     DV +
Sbjct: 267 SNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHA-YIKKQRIDVDVAL 325

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVD+YAKCG ++ A Q+F +MP ++++TW ++I G A  G+ E AL+ FD+M   G 
Sbjct: 326 GTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGV 385

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD ++F+GVL+ACSH G +D G  HF SM+  Y I+P IEHY  +VD+LGRAG + EAE
Sbjct: 386 KPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAE 445

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LI++     D  +   LLGAC    N   AER AK+++E+ P    +YVLL N+Y++  
Sbjct: 446 ELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSK 505

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           +W +A + R LM   G++K PG S IE +
Sbjct: 506 KWEEAKRTRELMAERGMRKPPGCSQIEVH 534



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 137/277 (49%), Gaps = 18/277 (6%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +GK++H     LG   +   +++L++MY  CG +  + +VFDKM  K  VS + ++  + 
Sbjct: 103 EGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHA 162

Query: 64  QTGDFESVIRIFREM--------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           Q       +R+F  M         E+ L +   VL ACA    L + K +H +YI   G 
Sbjct: 163 QWDQPNEAVRLFDRMMKSENVKPNEVTLVN---VLTACARARDLAMVKRIH-EYIDEHGF 218

Query: 116 -KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            + V++ + L+D+Y KCGCV  A  +F +   +NL +WN MI+G  ++   EEAL +F +
Sbjct: 219 GRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFRE 278

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G K D V+   +L AC+H+G ++ G K   +  K+ RI   +     +VD+  + G
Sbjct: 279 MQTKGIKGDKVTMASLLLACTHLGALELG-KWLHAYIKKQRIDVDVALGTALVDMYAKCG 337

Query: 235 LLEEAETLIENADCRHDSSLWEVL---LGACTTFRNA 268
            +E A  +        D   W  L   L  C    NA
Sbjct: 338 SIETAIQVFHEMP-EKDVMTWTALILGLAMCGQAENA 373



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +HA +    +  +V + ++LVDMY KCG ++ + +VF +M +K+ ++ +AL+ G
Sbjct: 304 LELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILG 363

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E+ ++ F EM     + D  +F  VL AC+    +  G           G + 
Sbjct: 364 LAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQP 423

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPV 146
            I     LVD+  + G +  A ++   MP+
Sbjct: 424 TIEHYGGLVDILGRAGRIAEAEELIKSMPM 453



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 14/217 (6%)

Query: 103 KEVHCQYIRRSGCKDVIIESALVDL--YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFA 160
           K++H Q +R     D    S +V      + G + +A  +F Q+P     T NS+I G  
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI 220
                +EAL  + +M   G  PD  +F  +  +C +      G++     TK        
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS---EGKQIHCHSTK-LGFASDT 120

Query: 221 EHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
              N ++++    G L  A  + +  + +   S W  ++G    +   + A R+  ++M+
Sbjct: 121 YAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVS-WATMIGVHAQWDQPNEAVRLFDRMMK 179

Query: 281 ---LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
              +KP+     V L NV  A  R  D   ++ + +Y
Sbjct: 180 SENVKPN----EVTLVNVLTACARARDLAMVKRIHEY 212


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 192/303 (63%), Gaps = 4/303 (1%)

Query: 35  GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVL 90
           G V +   +FD M +++S+S SA++ GY Q G  E  +  F EM    E ++  SF   L
Sbjct: 128 GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCAL 187

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
             C+ +AAL LG+++HC+ ++        + +AL+ +Y KCG +D A   F ++  ++++
Sbjct: 188 STCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVV 247

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           +WN+MI G+A++G GEEAL +F+ M   G +PD  + + VL+ACSH GL+D+G ++F SM
Sbjct: 248 SWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSM 307

Query: 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHV 270
            ++Y I  K+ HY CMVDLLGRAG LEEA+ L++N     D++ W  LLGA     N  +
Sbjct: 308 NRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTEL 367

Query: 271 AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
            E+ A+ I E++P     Y+LL  +Y A GRW+DA K+R  M+  GVKK+PG SW+E  +
Sbjct: 368 GEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQN 427

Query: 331 KLN 333
           K++
Sbjct: 428 KIH 430



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 109/277 (39%), Gaps = 73/277 (26%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           ++V  ++++  Y + G VDE+  +F KM  KN +S + LL  Y Q G  E   R+F    
Sbjct: 56  DIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKM 115

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           +  L S+  ++                                         G V     
Sbjct: 116 DWTLVSWNCLM----------------------------------------GGFVRKRRN 135

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F  MP R+ I+W++MI+G++QNG  EEAL  F +M     + +  SF   LS CS++  
Sbjct: 136 LFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAA 195

Query: 200 IDRGRKHFASMTK------------------------EYR------IKPKIEHYNCMVDL 229
           ++ GR+    + K                        E R      ++  +  +N M+  
Sbjct: 196 LELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHG 255

Query: 230 LGRAGLLEEAETLIE---NADCRHDSSLWEVLLGACT 263
             R G  EEA T+ E       R D +    +L AC+
Sbjct: 256 YARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACS 292



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 90/182 (49%), Gaps = 18/182 (9%)

Query: 58  LLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           ++ GY +   F+    +F +M E DLFS+ ++L        L+  + +      R   +D
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARAL----FERMPERD 56

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           ++  +A++  YA+ G VD A +IF +MP++N I+WN +++ + QNGR E+A R+F+    
Sbjct: 57  IVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFE---- 112

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
                  + +  V   C   G + + R  F +M +   I      ++ M+    + G  E
Sbjct: 113 -----SKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSIS-----WSAMIAGYSQNGCSE 162

Query: 238 EA 239
           EA
Sbjct: 163 EA 164



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 9/183 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H +++  G      V ++L+ MY KCG +DE+   F ++L+K+ VS + ++ G
Sbjct: 196 LELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHG 255

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  E  + +F  M+      D  +   VL AC+    +  G E      R  G   
Sbjct: 256 YARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITA 315

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGR---GEEALRIF 172
            ++  + +VDL  + G ++ A  +   MP   +  TW +++     +G    GE+A +I 
Sbjct: 316 KLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQII 375

Query: 173 DDM 175
            +M
Sbjct: 376 FEM 378



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 14/140 (10%)

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           ++  Y +    D A  +F +MP R+L +WN M++G+ +N   + A  +F+ M E     D
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPE----RD 56

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
            VS+  +LS  +  G +D  R+ F  M  +  I      +N ++    + G +E+A+ L 
Sbjct: 57  IVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGIS-----WNGLLAAYVQNGRIEDAKRLF 111

Query: 244 ENADCRHDSSL--WEVLLGA 261
           E+   + D +L  W  L+G 
Sbjct: 112 ES---KMDWTLVSWNCLMGG 128


>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
 gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
 gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
          Length = 620

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 206/333 (61%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ V     + G+  + +V S+LV MY KCG + E+ RVFD ++ K+ V+ +A++ GY Q
Sbjct: 249 GRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQ 308

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     I +F  M++     D  +   VL AC+ + AL LG E+      R    +V +
Sbjct: 309 NGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYV 368

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGG 179
            +ALVD+YAKCG +D A ++F +M  +N+ +WN++I G A NG+G+EA++ F+ M  E G
Sbjct: 369 GTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDG 428

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD ++FIGVLSAC H GL+  G++ F S+T E++I PKIEHY+CMVD L R+G LEE 
Sbjct: 429 LKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCMVDPLARSGHLEEV 488

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
              IE    + D+ +   LL AC   +N  + ERV  +I++L+P    +YV+   +Y + 
Sbjct: 489 WDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASS 548

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           GR +D+ K+R LM+  GV K PG SW+E + K+
Sbjct: 549 GRLDDSAKMRGLMRERGVNKTPGCSWVEISGKV 581



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 132/242 (54%), Gaps = 13/242 (5%)

Query: 26  SLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----- 80
           SL+ +Y        + +VF+ +  ++ VS +A+++ Y + G    V R+ R+M +     
Sbjct: 168 SLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVV 227

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQ 139
            +  +  +VL AC     L LG+ V  ++ + +G + D ++ SALV +Y KCG +  A +
Sbjct: 228 PNAVTLAVVLAACRDEGDLVLGRWVE-EWSKSAGMETDSLVGSALVGMYEKCGEIAEARR 286

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F  +  ++++ WN+MI+G+AQNG   EA+ +F +M + G  PD ++  GVLSACS +G 
Sbjct: 287 VFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGA 346

Query: 200 IDRGRK--HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
           ++ G +   +AS    Y     +     +VD+  + G L++A  +     C++ +S W  
Sbjct: 347 LELGSELDGYASCRGLYN---NVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVAS-WNA 402

Query: 258 LL 259
           L+
Sbjct: 403 LI 404



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G E+       GL  NV V ++LVDMY KCG +D++  VF KM  KN  S +AL+ G
Sbjct: 347 LELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICG 406

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGK 103
               G  +  I+ F  M      + D  +F  VL AC     ++ GK
Sbjct: 407 LAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGK 453


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 131/337 (38%), Positives = 202/337 (59%), Gaps = 8/337 (2%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G+++H  V+ LGL   + V +S+V +Y K GL+  +  VF  + +K+ +S S ++  Y
Sbjct: 376 KWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVY 435

Query: 63  CQTG------DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Q G      D+ S +R  RE  + + F+   VL  C  +A L  GK+VH   +      
Sbjct: 436 SQGGYAKEAFDYLSWMR--REGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDH 493

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + ++ SAL+ +Y+KCG V+ A +IF  M + N+I+W +MI+G+A++G  +EA+ +F+ ++
Sbjct: 494 EAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKIS 553

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KPD+V+FIGVL+ACSH G++D G  +F  MT EY+I P  EHY C++DLL RAG L
Sbjct: 554 SVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRL 613

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE +I +  C  D  +W  LL +C    +       A++++ L P+   +++ L N+Y
Sbjct: 614 SEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIY 673

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A GRW +A  IR LMK  GV K  G SW+  N KLN
Sbjct: 674 AAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDKLN 710



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 134/260 (51%), Gaps = 6/260 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H   +  GL  +V V S+L+DMY K G +++  RVF KM K+N VS +A++ G   
Sbjct: 176 GELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVH 235

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     +  F EM       D  +F I L+A A  + L  GK +H Q I++   +   +
Sbjct: 236 AGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFV 295

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L  +Y KCG  D+  ++F +M + ++++W ++I+ + Q G  E A+  F  M +   
Sbjct: 296 INTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNV 355

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+  +F  V+SAC+++ +   G +    + +   +   +   N +V L  ++GLL+ A 
Sbjct: 356 SPNKYTFAAVISACANLAIAKWGEQIHGHVLR-LGLVDALSVANSIVTLYSKSGLLKSA- 413

Query: 241 TLIENADCRHDSSLWEVLLG 260
           +L+ +   R D   W  ++ 
Sbjct: 414 SLVFHGITRKDIISWSTIIA 433



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 147/293 (50%), Gaps = 16/293 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +H + I  G   +  V ++L  MY KCG  D   R+F+KM   + VS + L+  
Sbjct: 274 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITT 333

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G+ E  +  F+ M + ++    ++F  V+ ACA LA  + G+++H   +R      
Sbjct: 334 YVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDA 393

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +++V LY+K G +  A  +F  +  +++I+W+++I+ ++Q G  +EA      M  
Sbjct: 394 LSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRR 453

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRA 233
            G KP+  +   VLS C  M L+++G++  A +     +   I+H    ++ ++ +  + 
Sbjct: 454 EGPKPNEFALSSVLSVCGSMALLEQGKQVHAHV-----LCIGIDHEAMVHSALISMYSKC 508

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPD 284
           G +EEA  +       +  S W  ++        +  A  + +KI  + LKPD
Sbjct: 509 GSVEEASKIFNGMKINNIIS-WTAMINGYAEHGYSQEAINLFEKISSVGLKPD 560



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 5/177 (2%)

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFG 87
           K G + +S  +FDKM  ++ +S + L+ GY    D    + +F  M      + D F   
Sbjct: 102 KQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMIS 161

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           + L+AC     +  G+ +H   ++      V + SAL+D+Y K G ++   ++F +M  R
Sbjct: 162 VALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKR 221

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           N+++W ++I+G    G   EAL  F +M       D  +F   L A +   L+  G+
Sbjct: 222 NVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGK 278


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 129/330 (39%), Positives = 194/330 (58%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VH+  + L L  ++ V S L+DMY KCG V  +  +F+ M +++ V  ++++ G
Sbjct: 434 LELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISG 493

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                  E     F++M E  +F    S+  ++ +CA L+++  G+++H Q ++    ++
Sbjct: 494 LAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQN 553

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S+L+D+YAKCG +D A   F  M V+N++ WN MI G+AQNG GE+A+ +F+ M  
Sbjct: 554 VYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLT 613

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+FI VL+ CSH GL+D    +F SM   Y I+P +EHY C++D LGRAG   
Sbjct: 614 TKQKPDSVTFIAVLTGCSHSGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFA 673

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E   +I+    + D+ LWEVLL AC    NA + E  AK +  L P     YVLL N+Y 
Sbjct: 674 EVVAVIDKMPYKDDAILWEVLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYA 733

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            +GR  DA  +R LM   GV K  G SW+ 
Sbjct: 734 TLGRHGDASAVRALMSSRGVVKGRGYSWVN 763



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 143/277 (51%), Gaps = 20/277 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+  H   + +GL GN  VE+ L+ MY KCG V ++ R+FD M   N VS +A++ G
Sbjct: 158 LDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGG 217

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAA--------LRLGKEVHCQY 109
             Q+G  +  +R+F  M      +D  +   VL ACA   A        +RL + +H   
Sbjct: 218 LAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALV 277

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           +R+    D  + ++L+D+YAK   +D A ++F  M   ++++WN +++G+ Q G  E AL
Sbjct: 278 VRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERAL 337

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            + D M E G +P+ V++  +L++C     +   R  F  ++     KP +  +N ++  
Sbjct: 338 EVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIS-----KPSVTTWNTLLSG 392

Query: 230 LGRAGLLEEAETL---IENADCRHDSSLWEVLLGACT 263
            G+  L ++   L   +++ + + D +   V+L  C+
Sbjct: 393 YGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCS 429



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 16  GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
           G   N V  S+++    K   V  +  +FDK+ K +  + + LL GY Q    +  I +F
Sbjct: 347 GFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELF 406

Query: 76  REME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131
           R M+    + D  +  ++L  C+ L  L LGK+VH   ++     D+ + S L+D+Y+KC
Sbjct: 407 RRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKC 466

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           G V  A  IF  M  R+++ WNSMISG A +   EEA   F  M E G  P   S+  ++
Sbjct: 467 GQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMI 526

Query: 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           ++C+ +  I +GR+  A + K+      +   + ++D+  + G +++A
Sbjct: 527 NSCARLSSIPQGRQIHAQVLKD-GYDQNVYVGSSLIDMYAKCGNMDDA 573



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 35/220 (15%)

Query: 12  VITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESV 71
           V+  GL  +  + + LV++Y   GL   + R F  + + N  S +A +   C+ GD  + 
Sbjct: 36  VLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAA 95

Query: 72  -------------------------------IRIFREMEEIDL----FSFGIVLRACAGL 96
                                          + ++R M +  L    F+   VL AC  +
Sbjct: 96  RDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAV 155

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
           AAL  G+  H   ++     +  +E+ L+ +Y KCG V  A ++F  M   N +++ +M+
Sbjct: 156 AALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMM 215

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
            G AQ+G  ++ALR+F  M+    + D V+   VL AC+ 
Sbjct: 216 GGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQ 255



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +V   +A +    + G +  A  +  +MP RN ++WN++I+  A++    EAL ++  M
Sbjct: 74  PNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGM 133

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            + G  P + +   VLSAC  +  +D GR+
Sbjct: 134 LQEGLAPTNFTLASVLSACGAVAALDDGRR 163


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 137/347 (39%), Positives = 213/347 (61%), Gaps = 19/347 (5%)

Query: 2   LKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           LK+G ++HA+V+ T     ++V+ ++LVDMY KC  V+E+ RVFD+M  +N VS ++++ 
Sbjct: 264 LKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVS 323

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLA-------ALRLGKEVHCQYIRRS 113
           GY +    ++   +F +M + ++ S+  ++   AG         ALRL + +  + I  +
Sbjct: 324 GYARAASVKAARFMFSKMTQRNVVSWNALI---AGYTQNGENEEALRLFRLLKRESIWPT 380

Query: 114 GC-------KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
                     D+ + ++L+D+Y KCG ++   ++F +M  R+ ++WN++I G+AQNG G 
Sbjct: 381 HYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGA 440

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           EAL+IF  M   G KPDHV+ IGVL ACSH GL++ GR +F SM +E+ + P  +HY CM
Sbjct: 441 EALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCM 499

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286
           VDLLGRAG L EA+ LIE      D+ +W  LL AC    N  + +  A+K++E+ P   
Sbjct: 500 VDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNS 559

Query: 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             YVLL N+Y  +GRW D  ++R LM+  GV K PG SWIE  S+++
Sbjct: 560 GPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVH 606



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 141/278 (50%), Gaps = 35/278 (12%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VHA+++       + +++ L+D+YGKC  +D++ ++FD+M ++N+ + ++L+    ++G 
Sbjct: 37  VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96

Query: 68  FESVIRIFREMEEIDL-----------------------------------FSFGIVLRA 92
            +   R+F  M E D                                    +SFG  L A
Sbjct: 97  LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
           CAGL  L +G +VH    +     DV + SAL+D+Y+KCG V  A ++F  M  RNL+TW
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTW 216

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           NS+I+ + QNG   EAL +F  M + G +PD V+   V+SAC+ +  +  G +  A + K
Sbjct: 217 NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK 276

Query: 213 EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
             + +  +   N +VD+  +   + EA  + +    R+
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRN 314



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 133/263 (50%), Gaps = 39/263 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G +VHA V       +V + S+L+DMY KCG V  +  VF  M+++N V+ ++L+  
Sbjct: 163 LNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITC 222

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y Q G     + +F  M     E D  +   V+ ACA L AL+ G ++H + ++ +  + 
Sbjct: 223 YEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRD 282

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPV------------------------------ 146
           D+++ +ALVD+YAKC  V+ A ++F +M +                              
Sbjct: 283 DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMT 342

Query: 147 -RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG--LIDRG 203
            RN+++WN++I+G+ QNG  EEALR+F  +      P H +F  +L +   +G  LID  
Sbjct: 343 QRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMY 402

Query: 204 RKHFASMTKEYRIKPKIEHYNCM 226
            K   S+    R+  K++  +C+
Sbjct: 403 MK-CGSIEDGSRVFEKMKERDCV 424



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 4/128 (3%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           F  +L +C    + R  + VH + +      ++ I++ L+D+Y KC C+D A ++F +MP
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMP 77

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN  TWNS+IS   ++G  +EA R+F  M E    PD  S+  ++S  +     +   +
Sbjct: 78  QRNTFTWNSLISVLTKSGFLDEAARLFGSMPE----PDQCSWNSMVSGFAQHDRFEESLE 133

Query: 206 HFASMTKE 213
           +F  M +E
Sbjct: 134 YFVKMHRE 141


>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 676

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 207/332 (62%), Gaps = 4/332 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G+++HA +   G+   + +ES+L+DMY KCG ++++ ++F+   + + VS + +L G  
Sbjct: 274 EGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDEVSMTVILVGLA 333

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLA----ALRLGKEVHCQYIRRSGCKDVI 119
           Q G  E  I+ F  M +  +     V+ A  G++    +L LGK++H   I+R  C +  
Sbjct: 334 QNGSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVDNSLGLGKQLHSLVIKRKFCGNTF 393

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + + L+++Y+KCG +  +  +F +MP RN ++WNSMI+ FA++G G  AL+++++MT   
Sbjct: 394 VNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLE 453

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KP  V+F+ +L ACSH+GLID+GR+    M + + IKP+ EHY C++D+LGRAGL++EA
Sbjct: 454 VKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIKPRTEHYTCIIDMLGRAGLMKEA 513

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
           ++ I++   + D  +W+ LLGAC+   +  V E  A+++ E  PD   +++L+ N+Y + 
Sbjct: 514 KSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFETAPDSSAAHILMANIYSSR 573

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           G+W +  K    MK  GV K  G SWIE   K
Sbjct: 574 GKWKERAKTIKRMKEMGVTKETGISWIEMEKK 605



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 130/243 (53%), Gaps = 4/243 (1%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-- 78
           +VV +SL+ +Y KCG + ++ ++FD+M  ++ +S + +  G+ +  + ES   + + M  
Sbjct: 90  LVVWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 79  -EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
               D  +  IVL  C       + K +H   I     K++ + + L+  Y KCGC    
Sbjct: 150 SGGFDQATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSG 209

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
             +F +M  RN+ITW ++ISG  +N   E+ LR+F  M  G   P+ V+++  L+ACS  
Sbjct: 210 RWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLSALAACSGS 269

Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
            +I  G++  A + K + I+ ++   + ++D+  + G +E+A  + E++    + S+  +
Sbjct: 270 QMIVEGQQIHALLWK-FGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDEVSMTVI 328

Query: 258 LLG 260
           L+G
Sbjct: 329 LVG 331



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 137/287 (47%), Gaps = 14/287 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K +HA  I  G    + V + L+  Y KCG       VF +M  +N ++ +A++ G  + 
Sbjct: 175 KMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRWVFSEMAHRNVITWTAVISGLIEN 234

Query: 66  GDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
              E  +R+F    R +   +  ++   L AC+G   +  G+++H    +     ++ IE
Sbjct: 235 ELHEDGLRLFCLMRRGLVHPNSVTYLSALAACSGSQMIVEGQQIHALLWKFGIESELCIE 294

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SAL+D+Y+KCG ++ A +IF      + ++   ++ G AQNG  EEA++ F  M + G +
Sbjct: 295 SALMDMYSKCGSIEDAWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVE 354

Query: 182 PDHVSFIGVLSACSHMGLIDRGR---KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            D      V+SA   +  +D      K   S+  + +        N ++++  + G L +
Sbjct: 355 ID----ANVVSAILGVSFVDNSLGLGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTD 410

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKP 283
           ++T+      R+  S W  ++ A     +   A ++ +++  +E+KP
Sbjct: 411 SQTVFRRMPKRNYVS-WNSMIAAFARHGHGLAALKLYEEMTTLEVKP 456


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 133/359 (37%), Positives = 202/359 (56%), Gaps = 36/359 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H   +      + VV+SSL+DMY KCG+ D++ +VFD ++ KNSV  +AL+ GY  
Sbjct: 124 GKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVL 183

Query: 65  TGDFESVIRIFREMEEIDLFSF--------------------------------GIVLRA 92
            G  +  + +FR M    LF++                                  VL +
Sbjct: 184 NGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSS 243

Query: 93  CAG----LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
             G    LAA  LG+++H   +R      +I+ +A+VD+Y+KC  +  A ++F ++  R+
Sbjct: 244 AIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRD 303

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +I+W +M+ G AQ+GR EEA  ++D M   G KP+ V+F+G++ ACSH GL+ +GR+ F 
Sbjct: 304 IISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFD 363

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
           SM  EY I P+++HY C +DLL R+G L EAE LI       D + W  LL AC  + NA
Sbjct: 364 SMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNA 423

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            ++ RVA  ++EL+P    +YVLL NVY   G+W+    +R LM    ++K PG SWIE
Sbjct: 424 EMSIRVADNLLELRPKYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIE 482



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 5/176 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +  HA++I  GL  +    + LV  Y K  L+ ++  +FD+  +++    S+LL     +
Sbjct: 23  RRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHS 82

Query: 66  GDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              E V+ + R M   D      F    +  A A L +L LGK++H  ++      D ++
Sbjct: 83  ESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVV 142

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +S+L+D+Y KCG  D A ++F  +  +N + W ++ISG+  NGR +EAL +F  M 
Sbjct: 143 KSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMP 198


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 134/335 (40%), Positives = 204/335 (60%), Gaps = 5/335 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G  +H  +I   +  +V+V++SLVDMY K G ++ +  VF +ML KN +S SAL+ G+
Sbjct: 223 KMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGF 282

Query: 63  CQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G   + +++  +M+      D  S   VL AC+ +  L+LGK VH   +RR    D 
Sbjct: 283 AQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHF-DC 341

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           +  +A++D+Y+KCG + FA  +F Q+  R+ I+WN++I+ +  +G GEEAL +F  M E 
Sbjct: 342 VSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRET 401

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             KPDH +F  +LSA SH GL+++GR  F+ M  EY+I+P  +HY CMVDLL RAG +EE
Sbjct: 402 NVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEE 461

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A+ LIE+       ++W  LL  C       + E  AKK++EL PD    Y L+ N +  
Sbjct: 462 AQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFAT 521

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             RW++  ++R +MK +G+KK+PG S +E N KL+
Sbjct: 522 ARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLH 556



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 168/310 (54%), Gaps = 20/310 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+E   + +  G   +V V ++++++Y KCG +DE+ RVFDKM +++ V  + ++ G
Sbjct: 121 LRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITG 180

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G     + I+R+M +  +   G+V+    +AC  L   ++G  +H   IR+    D
Sbjct: 181 LAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMD 240

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           VI++++LVD+YAK G ++ A  +F +M  +N+I+W+++ISGFAQNG    AL++  DM  
Sbjct: 241 VIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQS 300

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC-----MVDLLGR 232
            G KPD VS + VL ACS +G +  G+     + +         H++C     ++D+  +
Sbjct: 301 FGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRL-------HFDCVSSTAVIDMYSK 353

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
            G L  A T+ +    R DS  W  ++ +     +   A  +  ++ E  +KPD H ++ 
Sbjct: 354 CGSLSFARTVFDQISFR-DSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPD-HATFA 411

Query: 291 LLDNVYRAVG 300
            L + +   G
Sbjct: 412 SLLSAFSHSG 421



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 125/237 (52%), Gaps = 5/237 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++HA +I  G+ G+    + L+  Y + G ++ + +VFDK  +    + +A++  Y + G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 67  DFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
                + ++  M       D  ++ +VL+AC     LR G+E   Q + +    DV + +
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGA 144

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           A+++LYAKCG +D A ++F +M  R+L+ W +MI+G AQNG+  EA+ I+  M +   + 
Sbjct: 145 AVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEG 204

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           D V  +G++ AC+ +G    G      M ++  I   I     +VD+  + G LE A
Sbjct: 205 DGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQ-TSLVDMYAKNGHLELA 260


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/316 (39%), Positives = 201/316 (63%), Gaps = 4/316 (1%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-- 79
           V  S+++  Y +CG VDE+ RVF +  +K+ V  +A++ GY + G  E  + +F EM   
Sbjct: 257 VTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLE 316

Query: 80  --EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
             E D ++   V+ +CA LA+L  G+ VH + I      ++++ SAL+D+Y+KCG +D A
Sbjct: 317 HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDA 376

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
             +F  MP RN+++WN+MI G AQNG  ++AL +F++M +   KPD+V+FIG+LSAC H 
Sbjct: 377 RSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHC 436

Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
             I++G+++F S++ ++ + P ++HY CMV+LLGR G +E+A  LI+N     D  +W  
Sbjct: 437 NWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWST 496

Query: 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
           LL  C+T  +   AE  A+ + EL P   + Y++L N+Y ++GRW D   +R LMK   V
Sbjct: 497 LLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNV 556

Query: 318 KKMPGKSWIEANSKLN 333
           KK  G SWIE +++++
Sbjct: 557 KKFAGFSWIEIDNEVH 572



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 157/335 (46%), Gaps = 46/335 (13%)

Query: 23  VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM---- 78
           + + L+ +Y K G + ++  +FDKMLK++  S +ALL  Y ++G  +++   F  M    
Sbjct: 60  LHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRD 119

Query: 79  ------------------EEIDLF-----------SFGIV--LRACAGLAALRLGKEVHC 107
                             E ++LF            + IV  L A A L  LR GK++H 
Sbjct: 120 SVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHG 179

Query: 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
             I R+   +V I +AL D+YAKCG ++ A  +F  +  +NL++WN MISG+A+NG+ E+
Sbjct: 180 SIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEK 239

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
            + +   M   G  PD V+   +++A    G +D  R+ F+    E++ K  I  +  M+
Sbjct: 240 CIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFS----EFKEK-DIVCWTAMM 294

Query: 228 DLLGRAGLLEEAETLIENADCRH---DSSLWEVLLGACTTFRNAHVAERVAKK--IMELK 282
               + G  E+A  L       H   DS     ++ +C    + H  + V  K  +  L 
Sbjct: 295 VGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLN 354

Query: 283 PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
            +  +S  L+D +Y   G  +DA  +  LM    V
Sbjct: 355 NNLLVSSALID-MYSKCGFIDDARSVFNLMPTRNV 388



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 139/295 (47%), Gaps = 55/295 (18%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H  +I     GNV + ++L DMY KCG ++++  +FD + KKN VS + ++ G
Sbjct: 171 LRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISG 230

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVII 120
           Y + G  E  I +  +M                                R SG   D + 
Sbjct: 231 YAKNGQPEKCIGLLHQM--------------------------------RLSGHMPDQVT 258

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            S ++  Y +CG VD A ++F +   ++++ W +M+ G+A+NGR E+AL +F++M     
Sbjct: 259 MSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHI 318

Query: 181 KPDHVSFIGVLSACS-----HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           +PD  +   V+S+C+     H G    G+   A +     +       + ++D+  + G 
Sbjct: 319 EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVS------SALIDMYSKCGF 372

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME------LKPD 284
           +++A ++      R+  S W  ++  C   +N H  ++ A ++ E       KPD
Sbjct: 373 IDDARSVFNLMPTRNVVS-WNAMIVGCA--QNGH--DKDALELFENMLQQKFKPD 422



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VH K I  GL  N++V S+L+DMY KCG +D++  VF+ M  +N VS +A++ G
Sbjct: 338 LHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVG 397

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  +  + +F  M +     D  +F  +L AC     +  G+E       + G   
Sbjct: 398 CAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTP 457

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMIS 157
            +   A +V+L  + G ++ A  +   M    + + W++++S
Sbjct: 458 TLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 24/222 (10%)

Query: 55  SSALLQGYCQ-------TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLG 102
           S+A  + Y Q       T +     R+   ME       D F    +L   A    LR  
Sbjct: 18  STATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDA 77

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           + +  + ++R    D    +AL+  YAK G +      F +MP R+ +++N+ I+GF+ N
Sbjct: 78  QNLFDKMLKR----DXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGN 133

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIE 221
              +E+L +F  M   G +P   + + +L+A + +  +  G++ H + + + +     I 
Sbjct: 134 SCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFI- 192

Query: 222 HYNCMVDLLGRAGLLEEAETLIENADCRHDSSL--WEVLLGA 261
            +N + D+  + G +E+A  L    DC    +L  W +++  
Sbjct: 193 -WNALTDMYAKCGEIEQARWLF---DCLTKKNLVSWNLMISG 230


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 143/365 (39%), Positives = 202/365 (55%), Gaps = 38/365 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYG----------------------------- 32
           L  G+ VH  V    L  + +V ++L+DMY                              
Sbjct: 370 LSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNG 429

Query: 33  --KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-----EEIDLFS 85
             KC  ++ + R+FD+M  +NSVS +A++ GY Q       + +F+EM     +   + +
Sbjct: 430 FIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVIT 489

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQM 144
              VL  CA + A  LG  VH  Y+ ++    DV + +AL+D+YAK G +  A +IF +M
Sbjct: 490 IVAVLSGCADIGAFDLGSSVH-GYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEM 548

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P R++ +W +MISG A +G+G  AL  F DM++ G  P+ V+ + VLSACSH GL+  GR
Sbjct: 549 PKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGR 608

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
             F  M + + IKPKI+HY CMVDLLGRAGLL EA+ LIE+   + DS +W  LL AC  
Sbjct: 609 SLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLV 668

Query: 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324
             N  +AE   K I+EL+PD    Y+LL N+Y +  RW DA K R  M+   VKK PG S
Sbjct: 669 HGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCS 728

Query: 325 WIEAN 329
           W+E N
Sbjct: 729 WVEVN 733



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 132/309 (42%), Gaps = 39/309 (12%)

Query: 2   LKQGKEVHAKVITLGL-CGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           L++ K++H K +TLGL C     +   L++ Y + G   ++ +VF+ +   + VS + L+
Sbjct: 267 LEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLI 326

Query: 60  QGYCQTGDFESVIRIFREMEEIDLF--SFGIV--LRACAGLAALRLGKEVHCQYIRRSGC 115
             Y  T        IF  +    L   SF +V  + AC     L  G+ VH    R    
Sbjct: 327 SLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELG 386

Query: 116 KDVIIESALVDLYA-------------------------------KCGCVDFAHQIFLQM 144
            D I+ +AL+D+Y+                               KC  ++ A +IF +M
Sbjct: 387 SDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEM 446

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           P+RN ++W +MI+G+ Q       L +F +M  EG   P  ++ + VLS C+ +G  D G
Sbjct: 447 PMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLG 506

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
                 + K   +   +   N ++D+  ++G L  A  + +    R   S   ++ G   
Sbjct: 507 SSVHGYVNKT-NLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLAL 565

Query: 264 TFRNAHVAE 272
             +  H  E
Sbjct: 566 HGKGTHALE 574



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 17/197 (8%)

Query: 85  SFGIVLRACAGLAALRL--GKEVH----CQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
           +F  +L+ C  L  L+   GK V     C   +   CK       L++ Y + G    A 
Sbjct: 256 TFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACK-------LLNTYTQLGSPVDAQ 308

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F  +   ++++W  +IS +    +  +A  IF  +   G +PD    +G +SAC H  
Sbjct: 309 KVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRK 368

Query: 199 LIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
            +  GR  H      E    P +   N ++D+  R+G +E A ++ +  + + D S W  
Sbjct: 369 DLSNGRIVHGMVFRFELGSDPIVG--NALIDMYSRSGAIEVACSVFKTMEIK-DVSSWTS 425

Query: 258 LLGACTTFRNAHVAERV 274
           LL       +   A R+
Sbjct: 426 LLNGFIKCNDIEAARRI 442


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 124/319 (38%), Positives = 205/319 (64%), Gaps = 6/319 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+   + +++   K G + ++ ++FD+M +++ +S S+++ GY   G ++  + IF++M+
Sbjct: 227 NIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQ 286

Query: 80  EIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
             +     F    VL AC+ + A+  G+ VH  Y++R+  K D ++ +AL+D+YAKCG +
Sbjct: 287 REETRPGRFILSSVLAACSNIGAIDQGRWVHA-YLKRNSIKLDAVLGTALLDMYAKCGRL 345

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           D   ++F +M  R + TWN+MI G A +GR E+AL +F  + EG  KP+ ++ +GVL+AC
Sbjct: 346 DMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTAC 405

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           +H G +D+G + F +M + Y + P++EHY CMVDLLGR+GL  EAE LI +   + ++++
Sbjct: 406 AHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAV 465

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LLGAC    N  +AERV K ++EL+P     YVLL N+Y  VGR++D  KIR LMK 
Sbjct: 466 WGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKN 525

Query: 315 SGVKKMPGKSWIEANSKLN 333
            G+K +PG S ++ N  ++
Sbjct: 526 RGIKTVPGVSIVDLNGTVH 544



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 139/346 (40%), Gaps = 70/346 (20%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGL--VDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           ++HA V+  G   +  V  +L+  Y        D + +VF  +   N    + +++G  +
Sbjct: 51  QLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110

Query: 65  TGDFESVIRIFREM---EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR--------- 112
                  I  +  M      + F++  + +AC+   A++ G+++H   ++          
Sbjct: 111 NNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIK 170

Query: 113 ---------------------SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL-- 149
                                SG  DV+  + ++D Y KCG ++ A  +F QMPV+N+  
Sbjct: 171 SAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGS 230

Query: 150 -----------------------------ITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
                                        I+W+SM+ G+   GR +EAL IF  M    T
Sbjct: 231 WNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREET 290

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +P       VL+ACS++G ID+GR   A + K   IK        ++D+  + G L+   
Sbjct: 291 RPGRFILSSVLAACSNIGAIDQGRWVHAYL-KRNSIKLDAVLGTALLDMYAKCGRLDMGW 349

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            + E    R +   W  ++G       A  A  +  K+ E  +KP+
Sbjct: 350 EVFEEMKER-EIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPN 394



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 8/177 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + QG+ VHA +    +  + V+ ++L+DMY KCG +D    VF++M ++   + +A++ G
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  + +F +++E  +   GI    VL ACA    +  G  +  Q +R     D
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIF-QTMREFYGVD 428

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRI 171
             +E    +VDL  + G    A  +   MP++ N   W +++     +G  + A R+
Sbjct: 429 PELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERV 485


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 205/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++HA +       NV V S+LVDMY KC  V  +  VF +M+ KN +S +A++ G
Sbjct: 293 LEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVG 352

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  +R+F EM+    + D F+ G V+ +CA LA+L  G + HC  +       
Sbjct: 353 YGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPY 412

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +ALV LY KCG ++ AH++F +M   + ++W +++ G+AQ G+ +E + +F+ M  
Sbjct: 413 VTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLS 472

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+FIGVLSACS  GL+D+GR +F SM +++ I P  +HY CM+DL  R+G L+
Sbjct: 473 KGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLK 532

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +AE  I+      D+  W  LL AC    +  + +  A+ +++L P    SYVLL +++ 
Sbjct: 533 QAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHA 592

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G WND  K+R  M+   VKK PG SWI+  +K++
Sbjct: 593 SKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVH 628



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 161/318 (50%), Gaps = 41/318 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN------------- 51
           G++VH +++ LG        S LVDMY K G + ++ RVFD+M  KN             
Sbjct: 164 GRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLR 223

Query: 52  ------------------SVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIV 89
                             S++ + ++ G  Q G     + +FR M      ID ++FG +
Sbjct: 224 CKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSI 283

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           L AC  LAAL  GK++H  YI R+  +D V + SALVD+Y+KC  V  A  +F +M  +N
Sbjct: 284 LTACGALAALEEGKQIHA-YITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKN 342

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +I+W +MI G+ QNG GEEA+R+F +M   G KPD  +   V+S+C+++  ++ G   F 
Sbjct: 343 IISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEG-AQFH 401

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            +     ++P +   N +V L G+ G +E+A  L +     HD   W  L+     F  A
Sbjct: 402 CLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVMGYAQFGKA 460

Query: 269 HVAERVAKKIME--LKPD 284
                + +K++   +KPD
Sbjct: 461 KETIDLFEKMLSKGVKPD 478



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 40/243 (16%)

Query: 9   HAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           HA+ +   + G N+V  +SL+    + GLV +  R+F  + ++++VS +ALL G+ + G 
Sbjct: 64  HARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGA 123

Query: 68  -------FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                  + +++R    +    +   G+V+ A A L    LG++VHCQ +R         
Sbjct: 124 HARAAGAYVALLRDEAGVRPSRITMSGVVMVASA-LGDRALGRQVHCQILRLGFGAYAFT 182

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNL------------------------------- 149
            S LVD+YAK G +  A ++F +M  +N+                               
Sbjct: 183 GSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDS 242

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ITW +M++G  QNG   EAL +F  M   G   D  +F  +L+AC  +  ++ G++  A 
Sbjct: 243 ITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAY 302

Query: 210 MTK 212
           +T+
Sbjct: 303 ITR 305



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + L+  YA  G +  A ++F  MP RNL+T NS++S  A+ G   +  R+F  + +    
Sbjct: 50  NTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQ---- 105

Query: 182 PDHVSFIGVLSACS 195
            D VS+  +L+  S
Sbjct: 106 RDAVSYNALLAGFS 119


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 209/338 (61%), Gaps = 8/338 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GKE+HA +   G   +V + ++LVDMY + G VD +  VF+ M  +N VS SA++  
Sbjct: 198 LTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIAC 257

Query: 62  YCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           Y + G     +R FREM         +  +   VL+ACA LAAL  G+ +H  YI R G 
Sbjct: 258 YAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIH-GYILRRGL 316

Query: 116 KDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             ++ + SALV +Y +CG +D   ++F +M  R++++WNS+IS +  +G G +A++IF++
Sbjct: 317 DSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEE 376

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G  P  V+F+ VL ACSH GL++ G++ F SM +++ IKP++EHY CMVDLLGRA 
Sbjct: 377 MLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRAN 436

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L+EA  ++++        +W  LLG+C    N  +AER ++++  L+P    +YVLL +
Sbjct: 437 RLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLAD 496

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +Y     W++  +++ L+++ G++K+PG+ W+E   K+
Sbjct: 497 IYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKM 534



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 142/272 (52%), Gaps = 16/272 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VH  ++  G   +  + + L+ MY   G VD + +VFDK  K+     +AL + 
Sbjct: 93  LSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRA 152

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAA----LRLGKEVHCQYIRRS 113
               G  E V+ ++ +M  I    D F++  VL+AC         L  GKE+H    RR 
Sbjct: 153 LTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRG 212

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
               V I + LVD+YA+ GCVD+A  +F  MPVRN+++W++MI+ +A+NG+  EALR F 
Sbjct: 213 YNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFR 272

Query: 174 D-MTEG-GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY--RIKPKIEHYNCMVDL 229
           + MTE   + P+ V+ + VL AC+ +  +++GR     + +     I P I   + +V +
Sbjct: 273 EMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVI---SALVTM 329

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            GR G L+  + + +    R D   W  L+ +
Sbjct: 330 YGRCGKLDVGQRVFDRMHDR-DVVSWNSLISS 360



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 110/250 (44%), Gaps = 6/250 (2%)

Query: 53  VSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           +S++ L+Q  C+ G  +  +R+  +       ++ +++  C   ++L  G  VH   +  
Sbjct: 47  ISNNQLIQSLCKEGKLKQALRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDN 106

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
              +D  + + L+ +Y+  G VD+A ++F +   R +  WN++       G GEE L ++
Sbjct: 107 GSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLY 166

Query: 173 DDMTEGGTKPDHVSFIGVLSAC----SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
             M   G + D  ++  VL AC         + +G++  A +T+       +     +VD
Sbjct: 167 WKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRR-GYNSHVYIMTTLVD 225

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288
           +  R G ++ A  +      R+  S W  ++        A  A R  +++M    D   +
Sbjct: 226 MYARFGCVDYASYVFNGMPVRNVVS-WSAMIACYAKNGKAFEALRTFREMMTETKDSSPN 284

Query: 289 YVLLDNVYRA 298
            V + +V +A
Sbjct: 285 SVTMVSVLQA 294


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 201/337 (59%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++ G+ +H   +  G    +V + SSLVDMYGKCG  D++ +VFD+M  +N V+ +AL+ 
Sbjct: 220 VRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIA 279

Query: 61  GYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q   FE  + +F EM + D+     +   VL ACA + AL  G+ VHC  I+ S   
Sbjct: 280 GYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEI 339

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + + L+D YAKCGC++ A  +F ++  +N+ TW +MI+GFA +G    A+ +F  M 
Sbjct: 340 NTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTML 399

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                P+ V+FI VLSAC+H GL++ GR+ F SM + + ++PK +HY CMVDL GR GLL
Sbjct: 400 SSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLL 459

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA+ LIE       +++W  L G+C   ++  + +  A ++++L+P     Y LL N+Y
Sbjct: 460 EEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLY 519

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
                W+D  ++R  MK   V K PG SWIE   KL+
Sbjct: 520 SESQNWDDVARVRKQMKDQQVVKSPGCSWIEVKGKLH 556



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 132/250 (52%), Gaps = 20/250 (8%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           + HA ++  G   ++ V +SL+  Y  CGL +   RVFD    K+ VS +A++ G+ +  
Sbjct: 124 QFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRND 183

Query: 67  DFESVIRIFREME-------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DV 118
                +  F EM+       E+ + S   VL+A      +R G+ +H  Y+     + DV
Sbjct: 184 SSLEAMTYFVEMKRSGVAANEMTVVS---VLKATRKAEDVRFGRSIHGFYLEAGRVRCDV 240

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            I S+LVD+Y KCGC D A ++F +MP RN++TW ++I+G+ Q    E+ + +F++M + 
Sbjct: 241 FIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKS 300

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRAG 234
              P+  +   VLSAC+H+G + RGR+        Y IK  IE        ++D   + G
Sbjct: 301 DVAPNEKTLSSVLSACAHVGALHRGRR-----VHCYVIKNSIEINTTVGTTLIDFYAKCG 355

Query: 235 LLEEAETLIE 244
            LEEA  + E
Sbjct: 356 CLEEAILVFE 365



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 75/158 (47%), Gaps = 1/158 (0%)

Query: 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           + H   ++     D+ + ++L+  Y+ CG  +F  ++F     +++++W +MI GF +N 
Sbjct: 124 QFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRND 183

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
              EA+  F +M   G   + ++ + VL A      +  GR       +  R++  +   
Sbjct: 184 SSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIG 243

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           + +VD+ G+ G  ++A+ + +    R+  + W  L+  
Sbjct: 244 SSLVDMYGKCGCYDDAQKVFDEMPSRNVVT-WTALIAG 280


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 204/337 (60%), Gaps = 12/337 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H   + +G    V V +SL+DMYGKC  ++++  +F+ M +K+  S ++++  
Sbjct: 253 LNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSV 312

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG--- 114
           + Q GD +  +R+   M     + DL +   VL AC+ LAAL  G+E+H  Y+  SG   
Sbjct: 313 HEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIH-GYMIVSGLGK 371

Query: 115 ----CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
                 DV++++A++D+YAKCG +  AH +F +M  +++ +WN MI G+  +G G EAL 
Sbjct: 372 DGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALE 431

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F  M E   KPD V+F+GVLSACSH G + +GR     M  +Y + P IEHY C++D+L
Sbjct: 432 MFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDML 491

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYV 290
           GRAG L+EA  L        +  +W  LL AC   ++A +AE  A+++ EL+P+   SYV
Sbjct: 492 GRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYV 551

Query: 291 LLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           L+ NVY AVGR+ +  ++R  M+   V+K PG SWIE
Sbjct: 552 LMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIE 588



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 147/290 (50%), Gaps = 12/290 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++H  +   GL  +V + S+LV+ Y K GL++ +   F+++  ++ V  +A++ GY Q 
Sbjct: 156 KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G FE V+  FR M +  +    F+   VL   A +  L  G+ +H   ++      V + 
Sbjct: 216 GQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++L+D+Y KC C++ A +IF  M  +++ +WNS++S   Q G  +  LR+ D M   G +
Sbjct: 276 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQ 335

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMT-----KEYRIKPKIEHYNCMVDLLGRAGLL 236
           PD V+   VL ACSH+  +  GR+    M      K+ +    +   N ++D+  + G +
Sbjct: 336 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            +A  + E    + D + W +++         + A  +  ++ E  LKPD
Sbjct: 396 RDAHLVFERMSNK-DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPD 444



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 129/250 (51%), Gaps = 11/250 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVF-DKMLKKNSVSSSALL 59
            L +GKE+H+ ++  G   + +  +SL++MY KC  ++ +  +F D   + N  + +A++
Sbjct: 52  NLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAII 111

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G+   G  E     +++M       D F+F   ++AC  +  +   K++H    +    
Sbjct: 112 SGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLE 168

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV I SALV+ Y K G ++ A   F ++P+R+++ WN+M++G+AQ G+ E  L  F  M
Sbjct: 169 LDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
            +    P   +  GVLS  + MG ++ GR  H  +M   Y     +   N ++D+ G+  
Sbjct: 229 NDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS--NSLIDMYGKCK 286

Query: 235 LLEEAETLIE 244
            +E+A  + E
Sbjct: 287 CIEDALEIFE 296



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-- 147
           L+A A    L  GKE+H   +        +  ++L+++Y+KC  ++FA  IF   P    
Sbjct: 44  LQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSD-PTHEI 102

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           N+  +N++ISGF  NG  EE    +  M   G  PD  +F   + AC  + +++  + H 
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVLEIKKIH- 159

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             +  ++ ++  +   + +V+   + GL+E A+   E    R D  LW  ++
Sbjct: 160 -GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMV 209


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 214/339 (63%), Gaps = 8/339 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R++ G+++HA VI  GL  ++ V +S++ MY KC  +D +  VF  + +++ +S S ++ 
Sbjct: 285 RIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMIS 344

Query: 61  GYCQTG------DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           GY Q G      D+ S +R  RE    + F+F  VL  C  +A L  GK++H   +    
Sbjct: 345 GYAQGGCGEEAFDYLSWMR--REGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGL 402

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            ++ +++SAL+++Y+KCG +  A +IF +    N+++W +MI+G+A++G  +EA+ +F  
Sbjct: 403 EQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKK 462

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           + + G +PD V+FI VL+ACSH GL+D G  +F S++K ++I P  +HY CM+DLL RAG
Sbjct: 463 LPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAG 522

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L +AE++I++   + D  +W  LL AC    +    +R A+KI++L P+C ++++ L N
Sbjct: 523 RLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLAN 582

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +Y A G+W +A ++R +MK  GV K PG SWI+   +++
Sbjct: 583 MYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVS 621



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 154/289 (53%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+H + +  G      V ++L  MY KCG +D   R+F+ M +++ VS + ++  
Sbjct: 185 LNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMS 244

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E+ ++ FR M E D+    F+F  V+  CA L  +  G+++H   IRR     
Sbjct: 245 NVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDS 304

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++++ +Y+KC  +D A  +F  +  R++I+W++MISG+AQ G GEEA      M  
Sbjct: 305 LSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRR 364

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+  +F  VLS C +M ++++G++  A +     ++      + ++++  + G ++
Sbjct: 365 EGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLC-VGLEQNTMVQSALINMYSKCGSIK 423

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           EA  + + A+  +  S W  ++        +  A  + KK+ +  L+PD
Sbjct: 424 EASKIFDEAEYNNIVS-WTAMINGYAEHGYSQEAIDLFKKLPKVGLRPD 471



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 134/259 (51%), Gaps = 6/259 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H   +      +V V S+LVDMY K G VDE   VF +M  +N VS +A++ G  +
Sbjct: 87  GESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVR 146

Query: 65  TGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  +  F +M  +++  D ++F   L+ACA   AL  G+E+HCQ +++       +
Sbjct: 147 AGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFV 206

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L  +Y KCG +D+  ++F  M  R++++W ++I    Q G+ E A++ F  M E   
Sbjct: 207 ANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDV 266

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+  +F  V+S C+ +G I+ G +  A + +   +   +   N ++ +  +   L+ A 
Sbjct: 267 SPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVD-SLSVANSIMAMYSKCWQLDLAS 325

Query: 241 TLIENADCRHDSSLWEVLL 259
           T+ +    R D   W  ++
Sbjct: 326 TVFQGLS-RRDIISWSTMI 343



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 117/233 (50%), Gaps = 9/233 (3%)

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFG 87
           K G ++ + ++FDKML+++ +S + ++ GY    +    + +F +M       +D F   
Sbjct: 13  KTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILS 72

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           + L+AC    ++  G+ +H   ++      V + SALVD+Y K G VD    +F +MP+R
Sbjct: 73  LALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLR 132

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-H 206
           N+++W ++I+G  + G  +EAL  F DM       D  +F   L AC+  G ++ GR+ H
Sbjct: 133 NVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIH 192

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             ++ K +     +   N +  +  + G L+    L E+   R D   W  ++
Sbjct: 193 CQTLKKGFTAVSFVA--NTLATMYNKCGKLDYGLRLFESMTQR-DVVSWTTII 242


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 126/332 (37%), Positives = 210/332 (63%), Gaps = 6/332 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSV--SSSALLQGY 62
           GK+VH  V   G   N VVE+SLV+MY KC  +D++HRVF++M ++++   S +A++ GY
Sbjct: 181 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGY 240

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            + G +   +  FR M+    E D  S   VL  CA L AL LGK +H    +    +++
Sbjct: 241 ARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNI 300

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +AL+++YAKCG +D   ++F QM  R++I+W++MI G A +GR  EA+ +F +M + 
Sbjct: 301 CVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKA 360

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             +P  ++F+G+L+AC+H GL++ G ++F SM ++Y I+P +EHY C+V+LLG +G L++
Sbjct: 361 KIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQ 420

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A  L++    + DS +W  LL +C +  N  +A    + ++EL+P    +YVLL N+Y  
Sbjct: 421 ALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYAD 480

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           +G+W+   ++R LM+   +KK PG S IE ++
Sbjct: 481 LGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDN 512



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 136/265 (51%), Gaps = 13/265 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++HA ++   L  +  + + +VD+    G  + ++ +F  +   N+   +A+++ Y   
Sbjct: 76  KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 135

Query: 66  GDFESVIRIFREM-------EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
             +   I ++++M         I  D F+F  V+++CAGL    LGK+VH    +     
Sbjct: 136 KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 195

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRN--LITWNSMISGFAQNGRGEEALRIFDD 174
           + ++E++LV++Y KC  +D AH++F +M  R+  + +W +++SG+A+ G   +AL  F  
Sbjct: 196 NTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRR 255

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G +PD +S + VL  C+ +G ++ G+       K   ++  I   N ++++  + G
Sbjct: 256 MQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLR-NICVCNALIEMYAKCG 314

Query: 235 LLEEAETLIENADCRHDSSLWEVLL 259
            +++   L +    R D   W  ++
Sbjct: 315 SIDQGRRLFDQMKER-DVISWSTMI 338



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 8/183 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H      G   N+ V ++L++MY KCG +D+  R+FD+M +++ +S S ++ G
Sbjct: 281 LELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVG 340

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     I +F+EM+    E  + +F  +L ACA    L  G   + + ++R    +
Sbjct: 341 LANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLR-YFESMKRDYNIE 399

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDD 174
             +E    LV+L    G +D A ++  +MP + +   W S++S    +G  + A+   + 
Sbjct: 400 PGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEH 459

Query: 175 MTE 177
           + E
Sbjct: 460 LLE 462


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 133/346 (38%), Positives = 194/346 (56%), Gaps = 26/346 (7%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +H  VI  GL  N  ++++L+DMY + G +  S R+FD M  ++ VS + ++  Y   G 
Sbjct: 341 IHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGR 400

Query: 68  FESVIRIFREMEEID--------------------LFSFGIVLRACAGLAALRLGKEVHC 107
               + +  EM+ I+                      +   VL  CA L+AL  GKE+H 
Sbjct: 401 SSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHA 460

Query: 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
             IR      V + SALVD+YAKCGC++ A ++F QMP+RN+ITWN +I  +  +G+G+E
Sbjct: 461 YAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKE 520

Query: 168 ALRIFDDMTEGGT-----KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
           +L +F+DM   G      KP  V+FI + ++CSH G++D G   F  M  E+ I+P  +H
Sbjct: 521 SLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDH 580

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDS-SLWEVLLGACTTFRNAHVAERVAKKIMEL 281
           Y C+VDL+GRAG +EEA  L+       D    W  LLGAC  + N  + E  A+ +++L
Sbjct: 581 YACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQL 640

Query: 282 KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           +PD    YVLL N+Y + G W+ A  +R  MK  GVKK PG SWIE
Sbjct: 641 QPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIE 686



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 146/270 (54%), Gaps = 13/270 (4%)

Query: 2   LKQGKEVHAKVITLGL--CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           L  GK++HA V   G     +V ++++LV+MYGKCG + ++++VFD++ +++ VS ++++
Sbjct: 26  LYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSII 85

Query: 60  QGYCQTGDFESVIRIFREM--EEIDLFSFGIV--LRACAGLA---ALRLGKEVH-CQYIR 111
              C+  ++E  I+ FR M  E  +  SF +V    AC+ L     L LGK++H C +  
Sbjct: 86  SALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCF-- 143

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
           R G       +AL+ +YAK G +D A  + +    R+L+TWNSMIS F+QN R  EAL  
Sbjct: 144 RKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMF 203

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
              M   G KPD V+F  VL ACSH+ L+  G++  A   +   +       + +VD+  
Sbjct: 204 LRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYC 263

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGA 261
             G +E    + ++   R    LW  ++  
Sbjct: 264 NCGQVESGRLVFDSVLDR-KIGLWNAMIAG 292



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 123/265 (46%), Gaps = 17/265 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H      G        ++L+ MY K G +D++  +      ++ V+ ++++  + Q
Sbjct: 135 GKQIHGCCFRKGHW-RTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQ 193

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-KDVI 119
              F   +   R M     + D  +F  VL AC+ L  LR GKE+H   +R     ++  
Sbjct: 194 NERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSF 253

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEG 178
           + SALVD+Y  CG V+    +F  +  R +  WN+MI+G+AQ+   E+AL +F +M    
Sbjct: 254 VGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAA 313

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAG 234
           G   +  +   ++ A      I R           Y IK  +E      N ++D+  R G
Sbjct: 314 GLYSNATTMSSIVPAYVRCEGISRKEG-----IHGYVIKRGLETNRYLQNALIDMYSRMG 368

Query: 235 LLEEAETLIENADCRHDSSLWEVLL 259
            ++ ++ + ++ + R D   W  ++
Sbjct: 369 DIKTSKRIFDSMEDR-DIVSWNTII 392



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIR--RSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           D F+F  VL+A AG+  L LGK++H    +        V I++ LV++Y KCG +  A++
Sbjct: 9   DNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYK 68

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
           +F ++  R+ ++WNS+IS   +    E A++ F  M   G +P   + + +  ACS++
Sbjct: 69  VFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNL 126



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 108/250 (43%), Gaps = 43/250 (17%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GKE+HA  I   L   V V S+LVDMY KCG ++ + RVFD+M  +N ++ + ++  
Sbjct: 452 LAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMA 511

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           Y   G  +  + +F +M                 +A    G EV               E
Sbjct: 512 YGMHGKGKESLELFEDM-----------------VAEGAKGGEVKPT------------E 542

Query: 122 SALVDLYAKC---GCVDFAHQIFLQMPVRNLIT-----WNSMISGFAQNGRGEEALRIFD 173
              + L+A C   G VD    +F +M   + I      +  ++    + G+ EEA  + +
Sbjct: 543 VTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVN 602

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI-EHYNCMVDLLGR 232
            M  G  K    ++  +L AC     I+ G     ++ +   ++P +  HY  + ++   
Sbjct: 603 TMPSGFDKVG--AWSSLLGACRIYHNIEIGEIAAENLLQ---LQPDVASHYVLLSNIYSS 657

Query: 233 AGLLEEAETL 242
           AGL ++A  L
Sbjct: 658 AGLWDKAMNL 667


>gi|449448934|ref|XP_004142220.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37320-like [Cucumis sativus]
 gi|449502632|ref|XP_004161699.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37320-like [Cucumis sativus]
          Length = 524

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 206/336 (61%), Gaps = 6/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G + H+  I  G   NV V SSLV +YGKCG +  ++RVFD+M  +N VS +A++ G
Sbjct: 146 LRGGIQYHSVAIRTGFIANVYVGSSLVSLYGKCGELSNAYRVFDEMPVRNVVSWTAIIAG 205

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +         + +F+EM+ + L    F+F  +L AC G  AL +G+ +HCQ ++      
Sbjct: 206 FAVEWQVNMCLELFQEMKRMALQPNEFTFVTILTACTGSGALGVGRSLHCQTVKMGFHSY 265

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           + + +AL+ +Y KCG ++FA  IF  M V++ ++WNSMI+G+AQ+G    A+ +F  M  
Sbjct: 266 LHVANALISMYCKCGALNFALYIFEAMEVKDTVSWNSMIAGYAQHGLSLRAIDLFKAMRK 325

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +   + D ++F+GVLS+C H G ++ GR +F  M  E  +KP+++HY+C++DLLGRAGLL
Sbjct: 326 QKQVEADAITFLGVLSSCRHAGFVEEGRHYFNLMV-ELGLKPELDHYSCVIDLLGRAGLL 384

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA+  IE      +S +W  LL AC    N  +  + A+  + L+PDC  +++ L N+Y
Sbjct: 385 KEAQNFIEKMPITPNSIVWGSLLSACRLHGNVWIGLKAAESRLLLQPDCASTHLQLTNLY 444

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
              G  +DA ++R +MK  G+K  PG SWIE  +K+
Sbjct: 445 AKAGYLDDAARLRKIMKDKGLKTAPGYSWIEIQNKV 480



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 4/210 (1%)

Query: 52  SVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           S  SS +L   C++G ++  ++ F    + +      VL  C     LR G + H   IR
Sbjct: 101 SKDSSFVLDQECESGHWD--VQSFAGRFKFNANDISSVLSLCNSQRNLRGGIQYHSVAIR 158

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                +V + S+LV LY KCG +  A+++F +MPVRN+++W ++I+GFA   +    L +
Sbjct: 159 TGFIANVYVGSSLVSLYGKCGELSNAYRVFDEMPVRNVVSWTAIIAGFAVEWQVNMCLEL 218

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           F +M     +P+  +F+ +L+AC+  G +  GR      T +      +   N ++ +  
Sbjct: 219 FQEMKRMALQPNEFTFVTILTACTGSGALGVGRS-LHCQTVKMGFHSYLHVANALISMYC 277

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           + G L  A  + E  + + D+  W  ++  
Sbjct: 278 KCGALNFALYIFEAMEVK-DTVSWNSMIAG 306


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 204/337 (60%), Gaps = 12/337 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H   + +G    V V +SL+DMYGKC  ++++  +F+ M +K+  S ++++  
Sbjct: 253 LNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSV 312

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG--- 114
           + Q GD +  +R+   M     + DL +   VL AC+ LAAL  G+E+H  Y+  SG   
Sbjct: 313 HEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIH-GYMIVSGLGK 371

Query: 115 ----CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
                 DV++++A++D+YAKCG +  AH +F +M  +++ +WN MI G+  +G G EAL 
Sbjct: 372 DGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALE 431

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F  M E   KPD V+F+GVLSACSH G + +GR     M  +Y + P IEHY C++D+L
Sbjct: 432 MFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDML 491

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYV 290
           GRAG L+EA  L        +  +W  LL AC   ++A +AE  A+++ EL+P+   SYV
Sbjct: 492 GRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYV 551

Query: 291 LLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           L+ NVY AVGR+ +  ++R  M+   V+K PG SWIE
Sbjct: 552 LMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIE 588



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 147/290 (50%), Gaps = 12/290 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++H  +   GL  +V + S+LV+ Y K GL++ +   F+++  ++ V  +A++ GY Q 
Sbjct: 156 KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G FE V+  FR M +  +    F+    L   A +  L  G+ +H   ++      V + 
Sbjct: 216 GQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++L+D+Y KC C++ A +IF  M  +++ +WNS++S   Q G  +  LR+ D M   G +
Sbjct: 276 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQ 335

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMT-----KEYRIKPKIEHYNCMVDLLGRAGLL 236
           PD V+   VL ACSH+  +  GR+    M      K+ +    +   N ++D+  + G +
Sbjct: 336 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPD 284
            +A  + E    + D + W +++         + A  +  ++  ++LKPD
Sbjct: 396 RDAHLVFERMSNK-DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPD 444



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 12/142 (8%)

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V +E  L     K G  D  H+I       N+  +N++ISGF  NG  EE    +  M  
Sbjct: 80  VQLEIELPSNTLKAGENDPTHEI-------NVFAFNAIISGFITNGFPEEGFEFYQKMRN 132

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD  +F   + AC  + +++  + H   +  ++ ++  +   + +V+   + GL+E
Sbjct: 133 EGVMPDKFTFPCAIKAC--LDVLEIKKIH--GLLFKFGLELDVFIGSALVNCYLKFGLME 188

Query: 238 EAETLIENADCRHDSSLWEVLL 259
            A+   E    R D  LW  ++
Sbjct: 189 HAQVAFEELPIR-DVVLWNAMV 209


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 211/366 (57%), Gaps = 36/366 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  K+VH +V+  G   N+V+ SS+VD Y KCG +  +  +FD+ML K+  + + ++ G
Sbjct: 211 LQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSG 270

Query: 62  YCQTGDFESVIRIFREMEE----------------------IDLFS----FGI------- 88
           Y + GD  S   +F +M E                      +D F+    FGI       
Sbjct: 271 YAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTF 330

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF-LQMP 145
              L ACA +AAL+ GK+VH   IR     + I+ S+L+D+Y+KCG ++ +  +F L   
Sbjct: 331 SSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGN 390

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            ++++ WN+MIS  AQNG GE+A+++F+DM E G KPD ++FI +LSACSH GL+  G +
Sbjct: 391 KQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLR 450

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F +MT ++ + P  EHY+C++DLLGRAG   E    +EN  C+ D  +W  LLG C   
Sbjct: 451 FFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIH 510

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  +  +VA++++ELKP    +YV L ++Y  +G+W    K+R LM    ++K  G SW
Sbjct: 511 NNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISW 570

Query: 326 IEANSK 331
           I+  +K
Sbjct: 571 IDVGNK 576



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 167/348 (47%), Gaps = 40/348 (11%)

Query: 5   GKEVHA-KVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G++V A KV       N+   + ++  Y K G V+ + ++FD+M++K+ VS + ++  Y 
Sbjct: 112 GRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYA 171

Query: 64  QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           + G F   I ++R+   +D+    FSF  VL  C  L  L+L K+VH Q +      +++
Sbjct: 172 KQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLV 231

Query: 120 IESALVDLYAKCG---C----------------------------VDFAHQIFLQMPVRN 148
           + S++VD YAKCG   C                            ++ A ++F QMP +N
Sbjct: 232 LSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKN 291

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
            ++W+++ISG+A+N  G EAL  F  M + G  P+  +F   L AC+ +  +  G++   
Sbjct: 292 PVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHG 351

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            + + Y  +      + ++D+  + G+LE +  +      + D  +W  ++ A     + 
Sbjct: 352 YLIRTY-FRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHG 410

Query: 269 HVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
             A ++   ++E  LKPD  ++++++ +     G   +  +    M Y
Sbjct: 411 EKAMQMFNDMVESGLKPD-RITFIVILSACSHSGLVQEGLRFFKAMTY 457



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 7/120 (5%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCK--DVIIESALVDLYAKCGCVDFAHQIFLQ 143
           F  +LR CA     + GK VH  +++ +G K    I+ + L+ +Y +CG    A ++F +
Sbjct: 65  FVDLLRLCAKAKYFKGGKCVHL-HLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDK 123

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           M VRNL +WN M++G+A+ G    A ++FD M E     D VS+  ++ A +  G  +  
Sbjct: 124 MSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMME----KDVVSWNTIVLAYAKQGCFNEA 179


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 203/338 (60%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ V   V+  G+  N  + S+L+ MY KCG ++ + R+FD M  ++ ++ +A++ G
Sbjct: 240 LELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISG 299

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I +F  M+E     +  +   VL ACA + AL LGK++     +R    D
Sbjct: 300 YAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHD 359

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+D+YAK G +D A ++F  MP +N  +WN+MIS  A +G+ +EAL +F  M++
Sbjct: 360 IFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSD 419

Query: 178 --GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
             GG +P+ ++F+G+LSAC H GL+D G + F  M+  + + PKIEHY+CMVDLL RAG 
Sbjct: 420 EGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGH 479

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L EA  LI     + D      LLGAC + +N  + ERV + I+E+ P    +Y++   +
Sbjct: 480 LYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKI 539

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           Y  +  W D+ ++R LM+  G+ K PG SWIE  + L+
Sbjct: 540 YANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENHLH 577



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 145/269 (53%), Gaps = 15/269 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L      H+ +  L L  +     SL+  Y +CGLV  + +VFD++  ++SVS ++++ G
Sbjct: 138 LSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAG 197

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y + G     + +FREM      E D  S   +L AC  L  L LG+ V    + R    
Sbjct: 198 YAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTL 257

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  I SAL+ +YAKCG ++ A +IF  M  R++ITWN++ISG+AQNG  +EA+ +F  M 
Sbjct: 258 NSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMK 317

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGR 232
           E     + ++   VLSAC+ +G +D G++       EY  +   +H       ++D+  +
Sbjct: 318 EDCVTANKITLTAVLSACATIGALDLGKQ-----IDEYASQRGFQHDIFVATALIDMYAK 372

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +G L+ A+ + ++   ++++S W  ++ A
Sbjct: 373 SGSLDNAQRVFKDMPQKNEAS-WNAMISA 400



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 5/143 (3%)

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
           ++   + +F  M  + L    F+F     +CA LA+L      H    + +   D     
Sbjct: 102 NYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAH 161

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTK 181
           +L+  YA+CG V  A ++F ++P R+ ++WNSMI+G+A+ G   EA+ +F +M    G +
Sbjct: 162 SLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFE 221

Query: 182 PDHVSFIGVLSACSHMGLIDRGR 204
           PD +S + +L AC  +G ++ GR
Sbjct: 222 PDEMSLVSLLGACGELGDLELGR 244


>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 581

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 140/334 (41%), Positives = 205/334 (61%), Gaps = 7/334 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K GK  HA ++T G   N  + SSL+ MY KCG V+++ R+FD M  +N+V  ++++ G
Sbjct: 212 MKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISG 271

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I++FR+M+    ++D  +   V+ +C  + AL LG+ VH         KD
Sbjct: 272 YTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKD 331

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + ++++L+D+Y+KCG +  A+ IF  M  R+  +W  +I GFA NG   EAL +F  M E
Sbjct: 332 ISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQMEE 391

Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            GG  P+ ++F+GVL++CSH GL+++G +HF  M+  Y I P+IEHY CMVDLLGRA LL
Sbjct: 392 EGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKLL 451

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE  I+      D+ +W  LL AC T     +AE VA++I  L+P+     VLL  VY
Sbjct: 452 AEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCGGDVLLSTVY 511

Query: 297 RAVGRWNDAFKIRTLMKYSGVK-KMPGKSWIEAN 329
               RW DA K+RT + YSG K K PG S+IE +
Sbjct: 512 ATTSRWVDANKVRTGI-YSGRKTKQPGCSFIEVD 544



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 134/261 (51%), Gaps = 8/261 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALLQGY 62
           G ++HA  + LGL  +  V ++L++MY  C     +  V D   K   ++VS + ++ GY
Sbjct: 112 GAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGY 171

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G     ++ F +M +    +D  +    L ACA    +++GK  H   +      + 
Sbjct: 172 IHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINC 231

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + S+L+ +YAKCG V+ A +IF  MP RN + W SMISG+ Q G+ +EA+++F DM   
Sbjct: 232 YMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIA 291

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G K D  +   V+S+C  MG +D GR +  +    + +   I   N ++D+  + G +++
Sbjct: 292 GVKVDDATISTVVSSCGQMGALDLGR-YVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKK 350

Query: 239 AETLIENADCRHDSSLWEVLL 259
           A  +      + D+  W V++
Sbjct: 351 AYDIFCGM-VKRDNFSWTVII 370


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 206/358 (57%), Gaps = 32/358 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-------------- 47
           L  G E+H  ++ LG+  N  + SSLVDMY KCG++DE+ ++ +K+              
Sbjct: 499 LNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHP 558

Query: 48  -------------LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVL 90
                        +++  VS +A++ GY      E   R F  M E+    D F++  VL
Sbjct: 559 ETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVL 618

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
             CA LA++ LGK++H   I++    DV I S LVD+Y+KCG +  +  +F + P+R+ +
Sbjct: 619 DTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFV 678

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           TWN+MI G+A +G GEEA+++F+ M      P+H +F+ +L AC+HMGL++RG  +F  M
Sbjct: 679 TWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMM 738

Query: 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR-NAH 269
            KEY + P++EHY+ MVD+LG++G +E+A  LI+      D  +W  LL AC   R N  
Sbjct: 739 KKEYGLDPRLEHYSNMVDILGKSGEVEKALELIQEMPFEADDVIWRTLLSACKINRNNVE 798

Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            AE  A  ++ L P    +Y+LL N+Y   G W+ A ++RT M+   +KK PG SW+E
Sbjct: 799 AAEVAANALLRLDPQDSSTYILLSNIYADAGMWDKASELRTAMRSDKLKKEPGCSWVE 856



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 140/263 (53%), Gaps = 6/263 (2%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G ++H   + +G   +VV  S+L+DMY KC  +DES  VF  M +KN +S SA++ G 
Sbjct: 198 KLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGC 257

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q    +  +++F+EM+++ +      +  VL++CA L  LRLG ++H   ++    KD 
Sbjct: 258 VQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDG 317

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           I+ +A +D+YAKC  +  A ++F      NL ++N+MI+G++Q   G  AL +F  +++ 
Sbjct: 318 IVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKS 377

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
               D +S  G L AC+ +  +  G +     TK       I   N  +D+ G+   L+E
Sbjct: 378 SLGFDEISLSGALRACATVKGLSEGLQLHGLATKS-NFSRNICVANAFIDMYGKCEALDE 436

Query: 239 AETLIENADCRHDSSLWEVLLGA 261
           A  + +    R D+  W  ++ A
Sbjct: 437 ACRVFDEMG-RKDAVSWNAIIAA 458



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 124/245 (50%), Gaps = 6/245 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++HA  +      + +V ++ +DMY KC  + ++ R+FD     N  S +A++ G
Sbjct: 298 LRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITG 357

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  +    + +FR++ +     D  S    LRACA +  L  G ++H    + +  ++
Sbjct: 358 YSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRN 417

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +A +D+Y KC  +D A ++F +M  ++ ++WN++I+   QN    + L I   M  
Sbjct: 418 ICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLR 477

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD  +F  VL AC+   L      H   +       P I   + +VD+  + G+++
Sbjct: 478 SGMEPDEYTFGSVLKACAGDSLNHGMEIHTTIVKLGMASNPYIG--SSLVDMYSKCGMID 535

Query: 238 EAETL 242
           EAE +
Sbjct: 536 EAEKI 540



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 133/278 (47%), Gaps = 36/278 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL------ 58
           GK+ HA +I  G    V V + L+ +Y  CG +  + ++FD M  ++ VS +A+      
Sbjct: 68  GKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYAA 127

Query: 59  -------------------------LQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
                                    L G+ QTG+    +++F EM     E D  SF ++
Sbjct: 128 SNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSVI 187

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L+ C+ L   +LG ++H   +R     DV+  SAL+D+YAKC  +D +  +F  MP +N 
Sbjct: 188 LKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQKNW 247

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           I+W+++I+G  QN   +  L++F +M + G       +  VL +C+ +  +  G +  A 
Sbjct: 248 ISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAH 307

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
             K   +K  I      +D+  +   +++A+ L + ++
Sbjct: 308 ALKSDFVKDGIVR-TATLDMYAKCNNMQDAQRLFDMSE 344



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 31/157 (19%)

Query: 70  SVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129
           S   +  E     + +F  V + CA   A  LGK+ H   I       V + + L+ LY 
Sbjct: 36  STASVNHEKPATSVANFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYI 95

Query: 130 KCGCVDFAHQIFLQMPVRNL-------------------------------ITWNSMISG 158
            CG + +A ++F  MP+R++                               ++WNSM+SG
Sbjct: 96  NCGNLGYATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSG 155

Query: 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           F Q G   E++++F +M   G + D+ SF  +L  CS
Sbjct: 156 FLQTGENLESVKVFIEMGRSGVEFDNKSFSVILKVCS 192


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 199/330 (60%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VHA    LG   +V V SSL+++Y KCG ++ S  VF K+ + + V  ++++ G
Sbjct: 434 LEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAG 493

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +      +  +  F+ M +   F    SF  +  +CA L++L  G+++H Q I+     +
Sbjct: 494 FSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDN 553

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S+LV++Y KCG V  A   F  MP +N++TWN MI G+A NG G EA+ ++ DM  
Sbjct: 554 VFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMIS 613

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F+ VL+ACSH  L+D G + F+SM +++ + PK++HY C++D LGR G   
Sbjct: 614 SGEKPDDITFVAVLTACSHSALVDEGVEIFSSMLQKFEVVPKLDHYTCIIDCLGRVGRFN 673

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E E +++    + D+ +WEV+L +C    N  +A+R A+++  L P     YVLL N+Y 
Sbjct: 674 EVEVILDTMPYKDDTIVWEVVLSSCRVHANVSLAKRAAEELHRLNPRNSAPYVLLANMYS 733

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           ++GRW+DA  +R LM  + + K PG S  E
Sbjct: 734 SMGRWDDAQVVRDLMSDNQIHKDPGYSRSE 763



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 155/318 (48%), Gaps = 27/318 (8%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+  H  V+ +G   N+ V ++L+ MY KCGL +++ RVF+ +++ N V+ + ++ G  Q
Sbjct: 157 GRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQ 216

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACA------------GLAALRLGKEVHCQ 108
           T   +  + +FR M      +D  S   +L  CA            GL+    GK++H  
Sbjct: 217 TNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTL 276

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
            ++    +D+ + ++L+D+YAK G +D A  +F  +   ++++WN MISG+      E+A
Sbjct: 277 AVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKA 336

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           L  F  M   G +PD V++I +L+AC   G +  GR+ F  M+      P +  +N ++ 
Sbjct: 337 LECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQIFDCMS-----SPSLISWNAILS 391

Query: 229 LLGRAGLLEEAETLIENADCR---HDSSLWEVLLGACTTFRNAHVAERV--AKKIMELKP 283
              ++    EA  L      +    D +   ++L +C         ++V    + +    
Sbjct: 392 GYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYD 451

Query: 284 DCHLSYVLLDNVYRAVGR 301
           D +++  L+ NVY   G+
Sbjct: 452 DVYVASSLI-NVYSKCGK 468



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 136/307 (44%), Gaps = 48/307 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K +HA++    L  +  + + L+D+Y KC  +  +H VFDK+  KN  S +A+L  
Sbjct: 21  LSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKNIFSYNAILSA 80

Query: 62  YCQTGDFESVIRIFREMEE----------------------IDLF--------------S 85
           +C++ + +   R+F +M E                      +D +              +
Sbjct: 81  FCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHIT 140

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           F  V  AC GL  +  G+  H   ++     ++ + +AL+ +Y KCG  + A ++F  + 
Sbjct: 141 FATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIV 200

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS---HMGLIDR 202
             N +T+ +M+ G +Q  + +E L +F  M   G   D VS   +L  C+     G+ D 
Sbjct: 201 EPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDD 260

Query: 203 GR--------KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
            R        K   ++  ++  +  +   N ++D+  + G ++ AE + EN D +H    
Sbjct: 261 SRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLD-KHSVVS 319

Query: 255 WEVLLGA 261
           W +++  
Sbjct: 320 WNIMISG 326



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 110/203 (54%), Gaps = 7/203 (3%)

Query: 18  CGNVVVESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRI 74
           CG    + + ++M   C   G V    ++FD M   + +S +A+L GY Q+ D    + +
Sbjct: 346 CGYEPDDVTYINMLTACVKSGDVKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVEL 405

Query: 75  FREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
           FR+M+      D  +  I+L +CA L  L  GK+VH    +     DV + S+L+++Y+K
Sbjct: 406 FRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSK 465

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
           CG ++ +  +F ++   +++ WNSMI+GF+ N   ++AL  F  M + G  P   SF  +
Sbjct: 466 CGKMEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATI 525

Query: 191 LSACSHMGLIDRGRKHFASMTKE 213
            S+C+ +  + +G++  A + K+
Sbjct: 526 ASSCAKLSSLFQGQQIHAQIIKD 548



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 39/206 (18%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QGK++H   +  G   ++ + +SL+DMY K G +D +  VF+ + K + VS + ++ GY 
Sbjct: 269 QGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYG 328

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
              D E  +  F+ M+    E D  ++  +L AC     +++G+                
Sbjct: 329 NRCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGR---------------- 372

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
                              QIF  M   +LI+WN+++SG+ Q+    EA+ +F  M    
Sbjct: 373 -------------------QIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQW 413

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK 205
             PD  +   +LS+C+ +GL++ G++
Sbjct: 414 QNPDRTTLAIILSSCAELGLLEAGKQ 439



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 33/188 (17%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI-------- 140
           +L++C    +L   K +H +  R +   D  + + L+DLY+KC  +  AH +        
Sbjct: 11  LLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKN 70

Query: 141 -----------------------FLQMPVRNLITWNSMISGFAQNGRGEEALRIFD-DMT 176
                                  FLQMP RN ++ N++I+   +NG   +AL  +D  M 
Sbjct: 71  IFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMV 130

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               KP H++F  V SAC  +  ++ GR++   + K       I   N ++ +  + GL 
Sbjct: 131 YESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLK-VGFDSNIYVSNALLCMYTKCGLN 189

Query: 237 EEAETLIE 244
           E+A  + E
Sbjct: 190 EDAFRVFE 197


>gi|255568478|ref|XP_002525213.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535510|gb|EEF37179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 501

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 204/336 (60%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G + H   IT G   N  V SSL+ +YGKCG +D +H++F +M  +N V+ +A++ G
Sbjct: 122 LPGGIQFHCLAITSGFISNSYVGSSLITLYGKCGKLDNAHKLFHEMPVRNVVTWTAIISG 181

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q    +  + +F  M    L    F+F  +L AC G  AL  G   HCQ I+      
Sbjct: 182 FAQECQVDVCLELFSVMRNSTLKPNDFTFTSLLSACTGSGALGQGTSAHCQIIQMGFHSY 241

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+ +Y K G V  A  IF  +  +++++WNSMISG+AQ+G   +A+ +F+ MT+
Sbjct: 242 LHVANALISMYCKSGSVHDAFYIFNNIYSKDIVSWNSMISGYAQHGLAMQAIDLFEKMTK 301

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD ++F+GVLSAC H G +  GR +F SM  EY ++P+++HY+C+VDLLGRAGL+E
Sbjct: 302 LGVKPDSITFLGVLSACRHAGFVQGGRNYFNSMV-EYHLRPQLDHYSCLVDLLGRAGLIE 360

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  +I       ++ +W  LL +C    +  +  + A++ + L+P C  ++V L N+Y 
Sbjct: 361 EALDIILRMPILPNAVIWGSLLSSCRLHGSVWIGIQAAEQRLLLEPACAATHVQLANLYA 420

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +V  W+ A K+R +MK +G+K  PG SWIE  +K++
Sbjct: 421 SVRYWDKAAKVRKVMKDTGLKTNPGYSWIEIKNKVH 456


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 204/338 (60%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ V   V+  G+  N  + S+L+ MY KCG +  + R+FD M  ++ ++ +A++ G
Sbjct: 234 LELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISG 293

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I +F  M+E     +  +   VL ACA + AL LGK++     +R    D
Sbjct: 294 YAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHD 353

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+D+YAKCG +  A ++F +MP +N  +WN+MIS  A +G+ +EAL +F  M++
Sbjct: 354 IFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSD 413

Query: 178 --GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
             GG +P+ ++F+G+LSAC H GL++ G + F  M+  + + PKIEHY+CMVDLL RAG 
Sbjct: 414 EGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGH 473

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L EA  LIE    + D      LLGAC + +N  + ERV + I+E+ P    +Y++   +
Sbjct: 474 LYEAWDLIEKMPEKPDKVTLGALLGACRSKKNVDIGERVIRMILEVDPSNSGNYIISSKI 533

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           Y  +  W D+ ++R LM+  G+ K PG SWIE  + L+
Sbjct: 534 YANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENHLH 571



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 15/279 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   +  H+ V  L L  +     SL+ MY +CG V  + +VFD++ +++ VS ++++ G
Sbjct: 132 LSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAG 191

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y + G     + +F EM      E D  S   VL AC  L  L LG+ V    + R    
Sbjct: 192 YAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTL 251

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  I SAL+ +YAKCG +  A +IF  M  R++ITWN++ISG+AQNG  +EA+ +F  M 
Sbjct: 252 NSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMK 311

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGR 232
           E     + ++   VLSAC+ +G +D G++       EY  +   +H       ++D+  +
Sbjct: 312 EDCVTENKITLTAVLSACATIGALDLGKQ-----IDEYASQRGFQHDIFVATALIDMYAK 366

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
            G L  A+ + +    ++++S W  ++ A  +   A  A
Sbjct: 367 CGSLASAQRVFKEMPQKNEAS-WNAMISALASHGKAKEA 404



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 69/114 (60%), Gaps = 1/114 (0%)

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
           +CA LA L   +  H    + +   D     +L+ +Y++CG V FA ++F ++P R+L++
Sbjct: 125 SCANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVS 184

Query: 152 WNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           WNSMI+G+A+ G   EA+ +F +M    G +PD +S + VL AC  +G ++ GR
Sbjct: 185 WNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGR 238


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 204/327 (62%), Gaps = 5/327 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QGK+VH+ ++      ++ V SSL+DMY K   + E+ RVFD + +++ VS +A++ GY 
Sbjct: 129 QGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYA 188

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G  E  + +FR++     + +  +F  ++ A +GLA+L  GK+VH   +R+     V 
Sbjct: 189 QKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVA 248

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           ++++L+D+Y+KCG + ++ ++F  M  R++++WN+M+ G+ ++G G E + +F D+ +  
Sbjct: 249 LQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE- 307

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD V+ + VLS CSH GL+D G   F ++ KE        HY C++DLLGR+G LE+A
Sbjct: 308 VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKA 367

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
             LIEN       S+W  LLGAC    N HV E VA+K++E++P+   +YV+L N+Y A 
Sbjct: 368 LNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAA 427

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           G W D FK+R LM    V K PG+SWI
Sbjct: 428 GMWKDVFKVRKLMLEKTVTKEPGQSWI 454



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 155/289 (53%), Gaps = 9/289 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G++VHA++IT      V + + LV MY +CG +D++  V D+M +++ VS + ++ G
Sbjct: 26  LWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISG 85

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y QT      + +F +M       + ++   VL +C+G  ++  GK+VH   ++ +    
Sbjct: 86  YSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESH 145

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+L+D+YAK   +  A ++F  +P R++++  ++ISG+AQ G  EEAL +F  +  
Sbjct: 146 MFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYS 205

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G + +HV+F  +++A S +  +D G++ H   + KE      ++  N ++D+  + G L
Sbjct: 206 EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQ--NSLIDMYSKCGKL 263

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI-MELKPD 284
             +  + +N   R   S W  +L         H    + K +  E+KPD
Sbjct: 264 LYSRRVFDNMLERSVVS-WNAMLMGYGRHGLGHEVISLFKDLHKEVKPD 311



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 68/123 (55%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           + AC    AL  G++VH + I       V + + LV +Y +CG +D A  +  +MP R++
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ++W +MISG++Q  R  EAL +F  M   G  P+  +   VL++CS    I +G++  + 
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136

Query: 210 MTK 212
           + K
Sbjct: 137 LVK 139


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 127/331 (38%), Positives = 203/331 (61%), Gaps = 4/331 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R++ G+++HA ++ LGL  ++ VE+S++ MY KCG +  S  +F +M +++ VS S ++ 
Sbjct: 333 RIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIA 392

Query: 61  GYCQTGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q G     FE +  +  E  +   F+   VL AC  +A L  GK++H   +      
Sbjct: 393 GYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 452

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             ++ SAL+++Y KCG ++ A +IF      ++++W +MI+G+A++G   E + +F+ + 
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD V+FIGVLSACSH GL+D G  +F +M+K+Y+I P  EHY CM+DLL RAG L
Sbjct: 513 RVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRL 572

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            +AE +IE      D  +W  LL AC    +     R A++I++L+P+C  +++ L N+Y
Sbjct: 573 SDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIY 632

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            + G+W +A  IR LMK  GV K PG SWI+
Sbjct: 633 ASKGKWREAADIRKLMKSKGVIKEPGWSWIK 663



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 141/272 (51%), Gaps = 8/272 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H   +  GL  +V V S+L+DMY K G + E  RVF +M  +N VS +A++ G  +
Sbjct: 135 GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVR 194

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  +  F EM     E D ++F I L+ACA   AL  G+E+H Q +++       +
Sbjct: 195 AGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFV 254

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L  +Y KCG +++   +F +M +R++++W ++I+   Q G+ E A++ F  M E   
Sbjct: 255 ANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDV 314

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+  +F  V+S C+++  I+ G +  A +     +   +   N ++ +  + G L  + 
Sbjct: 315 SPNEYTFAAVISGCANLARIEWGEQLHA-LILHLGLAASLSVENSIMTMYAKCGQL-TSS 372

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
           ++I +   R D   W  ++      +  HV+E
Sbjct: 373 SVIFHEMTRRDIVSWSTIIAGYX--QGGHVSE 402



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 136/254 (53%), Gaps = 13/254 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+HA+ +  G   +  V ++L  MY KCG ++    +F+KM  ++ VS + ++  
Sbjct: 233 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 292

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  ++ F  M E D+    ++F  V+  CA LA +  G+++H   +       
Sbjct: 293 LVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 352

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + +E++++ +YAKCG +  +  IF +M  R++++W+++I+G+ Q G   EA  +   M  
Sbjct: 353 LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRM 412

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRA 233
            G KP   +   VLSAC +M +++ G++  A     Y +   +EH     + ++++  + 
Sbjct: 413 EGPKPTEFALASVLSACGNMAILEHGKQLHA-----YVLSIGLEHTAMVLSALINMYCKC 467

Query: 234 GLLEEAETLIENAD 247
           G +EEA  + + A+
Sbjct: 468 GSIEEASRIFDAAE 481



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 9/233 (3%)

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFG 87
           K G +  + R+FDKM +K+ +S + L+ GY    D    + +F+ M       ID F   
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           +  +AC   + +  G+ +H   ++      V + SAL+D+Y K G +    ++F +MP+R
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-H 206
           N+++W ++I+G  + G  +EAL  F +M     + D  +F   L AC+  G ++ GR+ H
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             +M K + +   +   N +  +  + G LE   TL E    R D   W  ++
Sbjct: 241 AQAMKKGFDVSSFVA--NTLATMYNKCGKLEYGLTLFEKMSMR-DVVSWTTII 290


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 196/349 (56%), Gaps = 27/349 (7%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + +H   + LG   +  V+++L+DMY + G +D S  +FD M  ++ VS + ++ GY  +
Sbjct: 420 ESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLS 479

Query: 66  GDFESVIRIFREMEEI---------------------DLFSFGIVLRACAGLAALRLGKE 104
           G + + + +  EM+ +                     +  +   VL  CA LAA+  GKE
Sbjct: 480 GRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKE 539

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
           +H   IR     D+ + SALVD+YAKCGC++ + ++F +MP +N+ITWN +I     +G+
Sbjct: 540 IHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGK 599

Query: 165 GEEALRIFDDMTE-----GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219
           GEEAL +F +M       G  KP+ V+FI V +ACSH GLI  G   F  M  ++ ++P 
Sbjct: 600 GEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPT 659

Query: 220 IEHYNCMVDLLGRAGLLEEAETLIENADCRHDS-SLWEVLLGACTTFRNAHVAERVAKKI 278
            +HY C+VDLLGRAG LEEA  L+       D    W  LLGAC   +N  + E  AK +
Sbjct: 660 SDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNL 719

Query: 279 MELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           + L+P+    YVLL N+Y + G WN A ++R  M+  GVKK PG SWIE
Sbjct: 720 LHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE 768



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 124/212 (58%), Gaps = 9/212 (4%)

Query: 2   LKQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           LK G+++HA  +  G    +V V ++LV+MYGKCG + +  +VFD++  ++ VS ++ + 
Sbjct: 108 LKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIA 167

Query: 61  GYCQTGDFESVIRIFR--EMEEIDLFSFGIV--LRACAGLA---ALRLGKEVHCQYIRRS 113
             C+   +E  +  FR  +ME ++L SF +V    AC+ L     LRLGK++H  Y  R 
Sbjct: 168 ALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLH-GYSLRV 226

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
           G +     +AL+ +YAK G VD +  +F     R++++WN+MIS F+Q+ R  EAL  F 
Sbjct: 227 GDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFR 286

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            M   G + D V+   VL ACSH+  +D G++
Sbjct: 287 LMVLEGVELDGVTIASVLPACSHLERLDVGKE 318



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 138/285 (48%), Gaps = 25/285 (8%)

Query: 1   RLKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           RL  GKE+HA V+    L  N  V S+LVDMY  C  V+   RVFD +L +     +A++
Sbjct: 312 RLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMI 371

Query: 60  QGYCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
            GY + G  E  + +F EM ++     +  +   V+ AC    A    + +H   ++   
Sbjct: 372 SGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGF 431

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            +D  +++AL+D+Y++ G +D +  IF  M VR+ ++WN+MI+G+  +GR   AL +  +
Sbjct: 432 KEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHE 491

Query: 175 MTE-----------------GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
           M                   G  KP+ ++ + VL  C+ +  I +G++  A   +   + 
Sbjct: 492 MQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNM-LA 550

Query: 218 PKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
             I   + +VD+  + G L  +  +  N     +   W VL+ AC
Sbjct: 551 SDITVGSALVDMYAKCGCLNLSRRVF-NEMPNKNVITWNVLIMAC 594



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 102/211 (48%), Gaps = 11/211 (5%)

Query: 59  LQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS- 113
           L+   ++ DF   I  + EM       D F+F  VL+A +GL  L+ G+++H   ++   
Sbjct: 64  LRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGY 123

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
           G   V + + LV++Y KCG +    ++F ++  R+ ++WNS I+   +  + E+AL  F 
Sbjct: 124 GSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFR 183

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK---PKIEHYNCMVDLL 230
            M     +    + + V  ACS++G++   R         Y ++    K    N ++ + 
Sbjct: 184 AMQMENMELSSFTLVSVALACSNLGVMHGLR--LGKQLHGYSLRVGDQKTFTNNALMAMY 241

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            + G +++++ L E+   R D   W  ++ +
Sbjct: 242 AKLGRVDDSKALFESFVDR-DMVSWNTMISS 271



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 12/167 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +GKE+HA  I   L  ++ V S+LVDMY KCG ++ S RVF++M  KN ++ + L+  
Sbjct: 534 IAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMA 593

Query: 62  YCQTGDFESVIRIFREM---------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
               G  E  + +F+ M          + +  +F  V  AC+    +  G  +  +    
Sbjct: 594 CGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHD 653

Query: 113 SGCKDVIIESA-LVDLYAKCGCVDFAHQIFLQMPVR--NLITWNSMI 156
            G +      A +VDL  + G ++ A+++   MP     +  W+S++
Sbjct: 654 HGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLL 700



 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 1/121 (0%)

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P R+  +W   +    ++    EA+  + +MT  G +PD+ +F  VL A S +  +  G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           +  A+  K       +   N +V++ G+ G + +   + +    R D   W   + A   
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDR-DQVSWNSFIAALCR 171

Query: 265 F 265
           F
Sbjct: 172 F 172


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 130/319 (40%), Positives = 195/319 (61%), Gaps = 6/319 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  +SL+  Y + G VD++  VF+ M ++NSVS +A++  Y Q+        +F  M 
Sbjct: 185 DVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMR 244

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
                +D F    +L AC GL AL  GK +H  YI +SG + D  + + ++D+Y KCGC+
Sbjct: 245 LENVVLDKFVAASMLSACTGLGALEQGKWIH-GYIEKSGIELDSKLATTVIDMYCKCGCL 303

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           + A ++F ++P + + +WN MI G A +G+GE A+ +F +M      PD ++F+ VLSAC
Sbjct: 304 EKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSAC 363

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           +H GL++ G+ +F  MT+   +KP +EH+ CMVDLLGRAGLLEEA  LI       D+ +
Sbjct: 364 AHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGV 423

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
              L+GAC    N  + E++ KK++EL+P     YVLL N+Y + GRW D  K+R LM  
Sbjct: 424 LGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMND 483

Query: 315 SGVKKMPGKSWIEANSKLN 333
            GVKK PG S IE+ S ++
Sbjct: 484 RGVKKAPGFSMIESESGVD 502



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 136/310 (43%), Gaps = 39/310 (12%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDM--YGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           K+ H+++I LGL  +      ++      K G ++ +  VFDK+   ++   + + +GY 
Sbjct: 37  KQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYL 96

Query: 64  QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIR-------- 111
           +     + I ++  M    +    F++  ++RAC    A+  GK++H   ++        
Sbjct: 97  RWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGF 156

Query: 112 -----------------------RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
                                      +DV+  ++L+  Y++ G VD A ++F  MP RN
Sbjct: 157 SLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERN 216

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
            ++WN+MI+ + Q+ R  EA  +FD M       D      +LSAC+ +G +++G K   
Sbjct: 217 SVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG-KWIH 275

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
              ++  I+   +    ++D+  + G LE+A  +      +  SS W  ++G        
Sbjct: 276 GYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISS-WNCMIGGLAMHGKG 334

Query: 269 HVAERVAKKI 278
             A  + K++
Sbjct: 335 EAAIELFKEM 344



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK +H  +   G+  +  + ++++DMY KCG ++++  VF+++ +K   S + ++ G
Sbjct: 268 LEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGG 327

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E+ I +F+EME      D  +F  VL ACA    +  GK          G K 
Sbjct: 328 LAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKP 387

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPV 146
            +     +VDL  + G ++ A ++  +MPV
Sbjct: 388 GMEHFGCMVDLLGRAGLLEEARKLINEMPV 417


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  257 bits (656), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 132/331 (39%), Positives = 203/331 (61%), Gaps = 6/331 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H  VI +G   +V   ++LV +Y  C  + ++ ++FD+M ++N+V+ +AL+ GY  
Sbjct: 108 GKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTH 167

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVI 119
              F   I  FR M     +    +  +VL AC+ L A   GK +H ++I  +  + +V 
Sbjct: 168 NRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIH-EFIYHNRLRLNVF 226

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+D+YAKCG V    ++F ++  +N+ TWN +ISG+A NG+G+ AL+ F  M    
Sbjct: 227 VGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMEN 286

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD V+F+GVL AC H GL+  GR  F SM +++ ++P+IEHY CMVDLLGRAGLLEEA
Sbjct: 287 FKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEA 346

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
             LI++     D  +W  LL AC    N  + E + K+++EL+P+   +YVLL N+Y   
Sbjct: 347 LELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRE 406

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
            RW +  K+R +M   G++K+PG S IE N+
Sbjct: 407 RRWAEVGKLRGMMNLRGIRKVPGCSSIEINN 437



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 9/250 (3%)

Query: 42  RVFDKMLKK-NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGL 96
           R+F K     NS   +++++ Y       + + IF  M +  +     +F  VL+A A L
Sbjct: 43  RIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQL 102

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
               +GK +H   I+     DV   +ALV LY  C  +  A Q+F +MP RN +TWN++I
Sbjct: 103 CDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALI 162

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216
           +G+  N +  +A+  F  M   G +P   + + VLSACSH+G  ++G K         R+
Sbjct: 163 TGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQG-KWIHEFIYHNRL 221

Query: 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL-GACTTFRNAHVAERVA 275
           +  +     ++D+  + G + E E + E      +   W VL+ G     +     +  +
Sbjct: 222 RLNVFVGTALIDMYAKCGAVYEVEKVFEEIR-EKNVYTWNVLISGYAMNGQGDAALQAFS 280

Query: 276 KKIME-LKPD 284
           + +ME  KPD
Sbjct: 281 RMLMENFKPD 290



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             QGK +H  +    L  NV V ++L+DMY KCG V E  +VF+++ +KN  + + L+ G
Sbjct: 206 FNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISG 265

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  ++ ++ F  M     + D  +F  VL AC     +  G+       ++ G + 
Sbjct: 266 YAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQP 325

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            I     +VDL  + G ++ A ++   M +  + I W +++
Sbjct: 326 RIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALL 366


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  257 bits (656), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 124/319 (38%), Positives = 205/319 (64%), Gaps = 6/319 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+   + +++   K G + ++ ++FD+M +++ +S S+++ GY   G ++  + IF++M+
Sbjct: 227 NIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQ 286

Query: 80  EIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
             +     F    VL AC+ + A+  G+ VH  Y++R+  K D ++ +AL+D+YAKCG +
Sbjct: 287 REETRPGRFILSSVLAACSNIGAIDQGRWVHA-YLKRNSIKLDAVLGTALLDMYAKCGRL 345

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           D   ++F +M  R + TWN+MI G A +GR E+AL +F  + EG  KP+ ++ +GVL+AC
Sbjct: 346 DMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTAC 405

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           +H G +D+G + F +M + Y + P++EHY CMVDLLGR+GL  EAE LI +   + ++++
Sbjct: 406 AHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAV 465

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LLGAC    N  +AERV K ++EL+P     YVLL N+Y  VGR++D  KIR LMK 
Sbjct: 466 WGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKD 525

Query: 315 SGVKKMPGKSWIEANSKLN 333
            G+K +PG S ++ N  ++
Sbjct: 526 RGIKTVPGVSIVDLNGTVH 544



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 131/285 (45%), Gaps = 40/285 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+++H  V+  G+  +V ++S+ + MY   G ++++ ++F    + + V  + ++ G
Sbjct: 148 VQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSG-ESDVVCWNTMIDG 206

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           Y + G                      VL A  GL A             +   K++   
Sbjct: 207 YLKCG----------------------VLEAAKGLFA-------------QMPVKNIGSW 231

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + +++  AK G +  A ++F +M  R+ I+W+SM+ G+   GR +EAL IF  M    T+
Sbjct: 232 NVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETR 291

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P       VL+ACS++G ID+GR   A + K   IK        ++D+  + G L+    
Sbjct: 292 PGRFILSSVLAACSNIGAIDQGRWVHAYL-KRNSIKLDAVLGTALLDMYAKCGRLDMGWE 350

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           + E    R +   W  ++G       A  A  +  K+ E  +KP+
Sbjct: 351 VFEEMKER-EIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPN 394



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 8/177 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + QG+ VHA +    +  + V+ ++L+DMY KCG +D    VF++M ++   + +A++ G
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  + +F +++E  +   GI    VL ACA    +  G  +  Q +R     D
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIF-QTMREFYGVD 428

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRI 171
             +E    +VDL  + G    A  +   MP++ N   W +++     +G  + A R+
Sbjct: 429 PELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERV 485


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  257 bits (656), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 140/333 (42%), Positives = 198/333 (59%), Gaps = 7/333 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALL 59
           L++G+ +HA+    GL   V V++SLV  YG CGL + +HRVFD++  L++N VS ++++
Sbjct: 136 LREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVM 195

Query: 60  QGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G+   G    V+ IFRE  E DL    F+   VL ACA + AL LG+ VH    +    
Sbjct: 196 NGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLV 255

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDD 174
            +  + +AL+DLYAKCG V+ A ++F +M V R +++W S+I G A NG G++AL +F  
Sbjct: 256 GNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGL 315

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M      P  ++ +GVL ACSH GL+D G ++F  M  +Y I P IEH  CMVDLLGRAG
Sbjct: 316 MERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAG 375

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            +EEA   I       ++ +W  LLGAC   +   + E    +++EL P     YVLL N
Sbjct: 376 RVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSN 435

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           +Y AVGRW DA  +R  M   GV+K PG S +E
Sbjct: 436 LYAAVGRWADAHVLRKTMATHGVRKNPGHSLVE 468



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 3/186 (1%)

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           R +   D  ++  +L+AC  L ALR G+ +H +  +      V ++++LV  Y  CG  +
Sbjct: 113 RRLAPPDTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFE 172

Query: 136 FAHQIFLQMPV--RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
            AH++F ++PV  RNL++WNS+++GFA NGR  E L IF +  E    PD  + + VL+A
Sbjct: 173 SAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTA 232

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+ +G +  GR+     +K   +       N ++DL  + G +E+A  + E         
Sbjct: 233 CAEIGALTLGRRVHVFASKVGLVG-NSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVV 291

Query: 254 LWEVLL 259
            W  L+
Sbjct: 292 SWTSLI 297


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 130/315 (41%), Positives = 201/315 (63%), Gaps = 4/315 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +V+  ++++  Y K G V+ + R+F +M  +  V+ +A++ GY + G  E  +R+FR M 
Sbjct: 196 SVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTML 255

Query: 80  EI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           E     +  S   VL  C+ L+AL+LGK+VH    +     D    ++LV +Y+KCG + 
Sbjct: 256 ETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLK 315

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A ++F+Q+P ++++ WN+MISG+AQ+G G++ALR+FD+M + G KPD ++F+ VL AC+
Sbjct: 316 DAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACN 375

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H GL+D G ++F +M +++ I+ K EHY CMVDLLGRAG L EA  LI++   +   +++
Sbjct: 376 HAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIY 435

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGAC   +N ++AE  AK ++EL P     YV L NVY A  RW+    IR  MK +
Sbjct: 436 GTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDN 495

Query: 316 GVKKMPGKSWIEANS 330
            V K+PG SWIE NS
Sbjct: 496 NVVKIPGYSWIEINS 510



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 122/267 (45%), Gaps = 39/267 (14%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +V   ++++    + GL+ E+ R+F  M +KN VS SA++ GY   GD ++ +  F    
Sbjct: 134 DVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECF---- 189

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
                 +   +R+                         VI  +A++  Y K G V+ A +
Sbjct: 190 ------YAAPMRS-------------------------VITWTAMITGYMKFGRVELAER 218

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +M +R L+TWN+MI+G+ +NGR E+ LR+F  M E G KP+ +S   VL  CS++  
Sbjct: 219 LFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSA 278

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +  G K    +  +  +         +V +  + G L++A  L      R D   W  ++
Sbjct: 279 LQLG-KQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP-RKDVVCWNAMI 336

Query: 260 GACTTFRNAHVAERVAKKIME--LKPD 284
                      A R+  ++ +  LKPD
Sbjct: 337 SGYAQHGAGKKALRLFDEMKKEGLKPD 363



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 7/152 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VH  V    L  +    +SLV MY KCG + ++  +F ++ +K+ V  +A++ G
Sbjct: 279 LQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISG 338

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  +R+F EM+    + D  +F  VL AC     + LG + +   +RR    +
Sbjct: 339 YAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQ-YFNTMRRDFGIE 397

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR 147
              E  + +VDL  + G +  A  +   MP +
Sbjct: 398 TKPEHYACMVDLLGRAGKLSEAVDLIKSMPFK 429



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 72/130 (55%), Gaps = 14/130 (10%)

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN-GRGEEALRIFDDM 175
           +VI  + L+  Y +CG +D A ++F  M V++ +TWNS+++ FA+  G  E A ++F+ +
Sbjct: 40  NVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKI 99

Query: 176 TEGGTKPDHVSFIGVLSAC--SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            +    P+ VS+  ++ AC   H+G+ D  R  F SM  +      +  +N M+  L + 
Sbjct: 100 PQ----PNTVSY-NIMLACHWHHLGVHD-ARGFFDSMPLK-----DVASWNTMISALAQV 148

Query: 234 GLLEEAETLI 243
           GL+ EA  L 
Sbjct: 149 GLMGEARRLF 158



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 24/249 (9%)

Query: 51  NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYI 110
           N ++S+ L+  Y + GD +S +R+F +M+     ++  +L A A        K  H +Y 
Sbjct: 40  NVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFA-------KKPGHFEYA 92

Query: 111 RRSGCKDVIIESALVDLYAKCGC----VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
           R+   K     +   ++   C      V  A   F  MP++++ +WN+MIS  AQ G   
Sbjct: 93  RQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMG 152

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           EA R+F  M E       VS+  ++S     G +D   + F +      I      +  M
Sbjct: 153 EARRLFSAMPEKNC----VSWSAMVSGYVACGDLDAAVECFYAAPMRSVIT-----WTAM 203

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           +    + G +E AE L +    R   + W  ++        A    R+ + ++E  +KP+
Sbjct: 204 ITGYMKFGRVELAERLFQEMSMRTLVT-WNAMIAGYVENGRAEDGLRLFRTMLETGVKPN 262

Query: 285 C-HLSYVLL 292
              L+ VLL
Sbjct: 263 ALSLTSVLL 271


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 207/330 (62%), Gaps = 5/330 (1%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+HA+VI      +  V ++L+D Y K G   ++ +VF+ +  K+ ++ SA+L GY QTG
Sbjct: 414 EMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTG 473

Query: 67  DFESVIRIFREM--EEI--DLFSFGIVLRACAG-LAALRLGKEVHCQYIRRSGCKDVIIE 121
           + E   ++F ++  E I  + F+F  V+ ACA   AA   GK+ H   I+      + + 
Sbjct: 474 ETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVS 533

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SALV +YAK G +D AH++F +   R+L++WNSMISG++Q+G+ ++AL +FD+M +    
Sbjct: 534 SALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMD 593

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D V+FIGV++AC+H GL+++G+K+F SM  ++ I P ++HY+CM+DL  RAG+LE+A  
Sbjct: 594 VDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMG 653

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           +I        +++W  LLGA    RN  + E  A+K++ L+P+   +YVLL N+Y A G 
Sbjct: 654 IINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGN 713

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           W +   +R LM    VKK PG SWIE  +K
Sbjct: 714 WQERTNVRKLMDKRKVKKEPGYSWIEVKNK 743



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 116/199 (58%), Gaps = 4/199 (2%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G++VH + +  GL  +V V +SLVDMY K   V++  RVFD+M ++N VS ++LL GY
Sbjct: 110 KLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGY 169

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G +  V  +F +M+      + ++   V+ A      + +G +VH   ++    + +
Sbjct: 170 SWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAI 229

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + ++L+ LY++ G +  A  +F +M +R+ +TWNSMI+G+ +NG+  E   IF+ M   
Sbjct: 230 PVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLA 289

Query: 179 GTKPDHVSFIGVLSACSHM 197
           G KP H++F  V+ +C+ +
Sbjct: 290 GVKPTHMTFASVIKSCASL 308



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 110/193 (56%), Gaps = 5/193 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VHA V+  G    + V +SL+ +Y + G++ ++  VFDKM  ++ V+ ++++ GY +
Sbjct: 213 GLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVR 272

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G    V  IF +M+   +     +F  V+++CA L  L L K + C+ ++     D I+
Sbjct: 273 NGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIV 332

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
            +AL+   +KC  +D A  +F  M   +N+++W +MISG  QNG  ++A+ +F  M   G
Sbjct: 333 ITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREG 392

Query: 180 TKPDHVSFIGVLS 192
            KP+H ++  +L+
Sbjct: 393 VKPNHFTYSAILT 405



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 111/227 (48%), Gaps = 8/227 (3%)

Query: 40  SHRVFDKMLKKNSV--SSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRAC 93
           +H +FDK+  + +     + LL  Y +    +  + +F  +     + D  +   V   C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 94  AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
           AG    +LG++VHCQ ++      V + ++LVD+Y K   V+   ++F +M  RN+++W 
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           S+++G++ NG       +F  M   G  P+  +   V++A  + G++  G +  A M  +
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHA-MVVK 222

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +  +  I  +N ++ L  R G+L +A  + +  + R D   W  ++ 
Sbjct: 223 HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR-DWVTWNSMIA 268



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 6/160 (3%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +QGK+ HA  I + L   + V S+LV MY K G +D +H VF +  +++ VS ++++ GY
Sbjct: 512 EQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGY 571

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G  +  + +F EM+    ++D  +F  V+ AC     +  G++     I        
Sbjct: 572 SQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPT 631

Query: 119 IIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMI 156
           +   S ++DLY++ G ++ A  I  +MP     T W +++
Sbjct: 632 MKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLL 671


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 209/367 (56%), Gaps = 35/367 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+++HA++  +G   +  +++++ +MY KCG + E+ +VF KM  KN V+ ++ L  
Sbjct: 380 LEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSM 439

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI--------------------------------- 88
           Y + GD  S  ++F EM   ++ S+ +                                 
Sbjct: 440 YIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTV 499

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             +L AC  LA L  GK VH + ++     D ++ ++L+ +Y+KCG V  A  +F +M  
Sbjct: 500 ITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSN 559

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R+ + WN+M++G+ Q+G G EA+ +F  M +    P+ ++   V+SACS  GL+  GR+ 
Sbjct: 560 RDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREI 619

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F  M +++++ P+ +HY CMVDLLGRAG L+EAE  I++  C  D S+W  LLGAC +  
Sbjct: 620 FRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHN 679

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  +AER A  I+EL+P     Y+ L N+Y   GRW+D+ K+R +M   G+KK  G+S I
Sbjct: 680 NVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSI 739

Query: 327 EANSKLN 333
           E + +++
Sbjct: 740 EIDGRIH 746



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 164/327 (50%), Gaps = 16/327 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G+++H  V  +G+  +V V ++L+ MY KCG +  +  VF KM ++N VS +A++Q 
Sbjct: 173 LEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQA 232

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q         ++ +M +  +     +F  +L +C    AL  G+ +H     R    D
Sbjct: 233 NAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETD 292

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG-----EEALRIF 172
           +I+ +AL+ +Y KC  V  A +IF +M  R++I+W++MI+G+AQ+G       +E  ++ 
Sbjct: 293 MIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLL 352

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLG 231
           + M   G  P+ V+F+ +L AC+  G +++GR+  A ++K  + +   ++    + ++  
Sbjct: 353 ERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQ--TAIFNMYA 410

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVL 291
           + G + EAE +        +   W   L       +   AE+V     E+     +S+ L
Sbjct: 411 KCGSIYEAEQVFSKM-ANKNVVAWTSFLSMYIKCGDLSSAEKV---FSEMPTRNVVSWNL 466

Query: 292 LDNVYRAVGRWNDAFKIRTLMKYSGVK 318
           +   Y   G     F++ + MK  G +
Sbjct: 467 MIAGYAQNGDIVKVFELLSSMKAEGFQ 493



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 136/264 (51%), Gaps = 6/264 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R + GK VH ++  LG+  ++ + +SL++ Y K   V  + +VF +M  ++ V+ S+++ 
Sbjct: 71  RFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIA 130

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y            F  M + ++     +F  +L+AC   + L  G+++H          
Sbjct: 131 AYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMET 190

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV + +AL+ +Y+KCG +  A ++F +M  RN+++W ++I   AQ+ +  EA  +++ M 
Sbjct: 191 DVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQML 250

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G  P+ V+F+ +L++C+    ++RGR+   S   E  ++  +   N ++ +  +   +
Sbjct: 251 QAGISPNAVTFVSLLNSCNTPEALNRGRR-IHSHISERGLETDMIVANALITMYCKCNSV 309

Query: 237 EEAETLIENADCRHDSSLWEVLLG 260
           +EA  + +    R D   W  ++ 
Sbjct: 310 QEAREIFDRMSKR-DVISWSAMIA 332



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 121/238 (50%), Gaps = 9/238 (3%)

Query: 63  CQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           C+ G     I++   +++  L     ++G V+  CA       GK VH Q        D+
Sbjct: 32  CKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDI 91

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + ++L++ Y+K   V  A Q+F +M +R+++TW+SMI+ +A N    +A   F+ MT+ 
Sbjct: 92  YLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDA 151

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             +P+ ++F+ +L AC++  ++++GRK   ++ K   ++  +     ++ +  + G +  
Sbjct: 152 NIEPNRITFLSILKACNNYSILEKGRK-IHTIVKAMGMETDVAVATALITMYSKCGEISV 210

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDN 294
           A  +      R+  S W  ++ A    R  + A  + +++++  + P+  +++V L N
Sbjct: 211 ACEVFHKMTERNVVS-WTAIIQANAQHRKLNEAFELYEQMLQAGISPNA-VTFVSLLN 266


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 132/331 (39%), Positives = 203/331 (61%), Gaps = 6/331 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H  VI +G   +V   ++LV +Y  C  + ++ ++FD+M ++N+V+ +AL+ GY  
Sbjct: 108 GKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTH 167

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVI 119
              F   I  FR M     +    +  +VL AC+ L A   GK +H ++I  +  + +V 
Sbjct: 168 NRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIH-EFIYHNRLRLNVF 226

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+D+YAKCG V    ++F ++  +N+ TWN +ISG+A NG+G+ AL+ F  M    
Sbjct: 227 VGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMEN 286

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD V+F+GVL AC H GL+  GR  F SM +++ ++P+IEHY CMVDLLGRAGLLEEA
Sbjct: 287 FKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEA 346

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
             LI++     D  +W  LL AC    N  + E + K+++EL+P+   +YVLL N+Y   
Sbjct: 347 LELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRE 406

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
            RW +  K+R +M   G++K+PG S IE N+
Sbjct: 407 RRWAEVGKLRGMMSLRGIRKVPGCSSIEINN 437



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 9/250 (3%)

Query: 42  RVFDKMLKK-NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGL 96
           R+F K     NS   +++++ Y       + + IF  M +  +     +F  VL+A A L
Sbjct: 43  RIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQL 102

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
               +GK +H   I+     DV   +ALV LY  C  +  A Q+F +MP RN +TWN++I
Sbjct: 103 CDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALI 162

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216
           +G+  N +  +A+  F  M   G +P   + + VLSACSH+G  ++G K         R+
Sbjct: 163 TGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQG-KWIHEFIYHNRL 221

Query: 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL-GACTTFRNAHVAERVA 275
           +  +     ++D+  + G + E E + E      +   W VL+ G     +     +  +
Sbjct: 222 RLNVFVGTALIDMYAKCGAVYEVEKVFEEIR-EKNVYTWNVLISGYAMNGQGDAALQAFS 280

Query: 276 KKIME-LKPD 284
           + +ME  KPD
Sbjct: 281 RMLMENFKPD 290



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             QGK +H  +    L  NV V ++L+DMY KCG V E  +VF+++ +KN  + + L+ G
Sbjct: 206 FNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISG 265

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  ++ ++ F  M     + D  +F  VL AC     +  G+       ++ G + 
Sbjct: 266 YAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQP 325

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            I     +VDL  + G ++ A ++   M +  + I W +++
Sbjct: 326 RIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALL 366


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 137/318 (43%), Positives = 199/318 (62%), Gaps = 6/318 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV   + ++  Y   GL++E+ RVF +   KN VS +A++ GY   G F  V+ +F +M+
Sbjct: 204 NVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQ 263

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
               + D  +   VL ACA + AL  G+ VH  YI ++G   D  + +ALVD+Y+KCG +
Sbjct: 264 HAGVKPDNCTLVSVLSACAHVGALSQGEWVHA-YIDKNGISIDGFVATALVDMYSKCGSI 322

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           + A ++F     +++ TWNS+ISG + +G G+ AL+IF +M   G KP+ V+F+ VLSAC
Sbjct: 323 EKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSAC 382

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           S  GL+D GR+ F  M   + I+P IEHY CMVDLLGR GLLEEAE L++    +  S +
Sbjct: 383 SRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVV 442

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           WE LLGAC    N  +AERVA+K++EL P    S+V L N+Y ++GRW D  ++R  M+ 
Sbjct: 443 WESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRA 502

Query: 315 SGVKKMPGKSWIEANSKL 332
            GV+K PG S IE +  +
Sbjct: 503 QGVRKDPGCSMIEVDGTV 520



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 147/287 (51%), Gaps = 43/287 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+++H  V+  GL  ++ ++++L+ +Y  CG ++++  + D+ML+++ VS +ALL  
Sbjct: 124 VEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSA 183

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           Y + G  E    +F EM E ++ S+  ++                               
Sbjct: 184 YAERGLMELACHLFDEMTERNVESWNFMISG----------------------------- 214

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
                 Y   G ++ A ++F + PV+N+++WN+MI+G++  GR  E L +F+DM   G K
Sbjct: 215 ------YVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVK 268

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEA 239
           PD+ + + VLSAC+H+G + +G    A + K       I+ +    +VD+  + G +E+A
Sbjct: 269 PDNCTLVSVLSACAHVGALSQGEWVHAYIDKN---GISIDGFVATALVDMYSKCGSIEKA 325

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
             +  N+  R D S W  ++   +T  +   A ++  +++    KP+
Sbjct: 326 LEVF-NSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPN 371



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 129/267 (48%), Gaps = 19/267 (7%)

Query: 7   EVHAKVITLGLCGNVVVESSL---VDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           + HA ++  GL  +    S L   V        +  +H +F ++   NS   + +++ Y 
Sbjct: 25  QAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYA 84

Query: 64  QTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            +   E+ + IF +M       D ++F   L++C   + +  G+++H   ++     D+ 
Sbjct: 85  NSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLF 144

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I++ L+ LYA CGC++ A  +  +M  R++++WN+++S +A+ G  E A  +FD+MTE  
Sbjct: 145 IQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERN 204

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +    S+  ++S    +GL++  R+ F     E  +K  +  +N M+     AG   E 
Sbjct: 205 VE----SWNFMISGYVGVGLLEEARRVFG----ETPVK-NVVSWNAMITGYSHAGRFSEV 255

Query: 240 ETLIEN---ADCRHDSSLWEVLLGACT 263
             L E+   A  + D+     +L AC 
Sbjct: 256 LVLFEDMQHAGVKPDNCTLVSVLSACA 282



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 103/203 (50%), Gaps = 7/203 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+ VHA +   G+  +  V ++LVDMY KCG ++++  VF+  L+K+  + ++++ G
Sbjct: 287 LSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISG 346

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  +  ++IF EM     + +  +F  VL AC+    L  G+E+    +   G + 
Sbjct: 347 LSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQP 406

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVRNL-ITWNSMISGFAQNGRGEEALRIFDDM 175
            I     +VDL  + G ++ A ++  +MP +   + W S++     +G  E A R+   +
Sbjct: 407 TIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKL 466

Query: 176 TEGGTKPDHVSFIGVLSACSHMG 198
            E   + +  SF+ + +  + MG
Sbjct: 467 LELSPQ-ESSSFVQLSNMYASMG 488


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/332 (42%), Positives = 200/332 (60%), Gaps = 6/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ V   V+   +  N  + S+L+DMYGKCG +  + RVFD M  K+ V+ +A++ G
Sbjct: 245 LGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITG 304

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     I +F  M E     D  +   VL AC+ + AL LGK V      +    D
Sbjct: 305 YAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHD 364

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YAKCG +D A ++F  MP +N ++WN+MIS  A +G+ +EAL +F  M++
Sbjct: 365 VYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSK 424

Query: 178 --GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
             G  +P+ ++FIGVLSAC H GL+D GR+ F SM   + + PK+EHY+CMVDL  RAGL
Sbjct: 425 DNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGL 484

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L EA  LI+    + D  +   LLGAC   RNA V ERV +  +E++     +YV+   +
Sbjct: 485 LYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKI 544

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           Y  + RW+D+ K+R LM+  GV K PG SWI+
Sbjct: 545 YANMRRWDDSAKMRVLMRQCGVSKTPGCSWID 576



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 158/291 (54%), Gaps = 10/291 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK  H  V   GL G+  V  SL+ MY +CG +  + +VFD+M  ++ VS ++++ G
Sbjct: 144 LVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISG 203

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  +  I +F EM E     D  +   VL AC  L  L LG+ V    + +    +
Sbjct: 204 YSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVN 263

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SAL+D+Y KCG +  A ++F  MP ++++TWN++I+G+AQNG   EA+ +F+ M E
Sbjct: 264 SYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMRE 323

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V+ I VLSACS +G +D G K   +   E  ++  +   + ++D+  + G L+
Sbjct: 324 AGPHPDRVTMIEVLSACSTIGALDLG-KWVETHASEKGLQHDVYVASALIDMYAKCGSLD 382

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVA----ERVAKKIMELKPD 284
           +A  + E+   +++ S W  ++ A      A  A     R++K    ++P+
Sbjct: 383 DAVRVFESMPHKNEVS-WNAMISALAFHGQAQEALSLFRRMSKDNGTVQPN 432



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 136/259 (52%), Gaps = 11/259 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++HA+++   +     + S ++D+      +  +  VF+++ K N  + + +L+G   T
Sbjct: 50  KQIHAQMLINSIPKPNFLLSKIIDLKD----LAYASLVFNQLTKPNIYAFNVMLRGLATT 105

Query: 66  -GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              ++  + ++ +++ + L    F++  +  AC  +  L  GK  HC   +     D  +
Sbjct: 106 WKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYV 165

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
             +L+ +YA+CG + FA ++F +M  R+L++WNSMISG+++ G  +EA+ +F +M E G 
Sbjct: 166 NHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGF 225

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD ++ + VL AC  +G +  GR        E +++      + ++D+ G+ G L  A 
Sbjct: 226 EPDEMTLVSVLGACGDLGDLGLGR-WVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISAR 284

Query: 241 TLIENADCRHDSSLWEVLL 259
            + ++   + D   W  ++
Sbjct: 285 RVFDSMPNK-DVVTWNAII 302


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 135/309 (43%), Positives = 189/309 (61%), Gaps = 8/309 (2%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----- 79
           ++L+  Y + G V ++  +FD+M  +N+VS SA++ GY Q GD    + +F  M+     
Sbjct: 281 NTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVR 340

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAH 138
             D    G VL ACA L  L  GK VH  Y++ +  +  V + +ALVD+YAKCG +  A 
Sbjct: 341 PDDTVLVG-VLAACAQLGVLEQGKWVHG-YLKANNIRITVFLGTALVDMYAKCGEMQLAM 398

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F  M  +N++ W +MI G A +GRG EAL +F  M   G KPD ++FIG L AC+H G
Sbjct: 399 EVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTG 458

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           L+D+GR+ F SM ++Y IKPKIEHY CMVDLL R GLL EA  ++E    + D+ +W  L
Sbjct: 459 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGAL 518

Query: 259 LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
           +  C   +N  +AE V K  +EL+PD   +YVLL N+Y A GR   A +IR LM+  GV 
Sbjct: 519 MAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVD 578

Query: 319 KMPGKSWIE 327
           K PG S +E
Sbjct: 579 KTPGCSTVE 587



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 72/130 (55%), Gaps = 1/130 (0%)

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           +R +   D    + L+  YA+ G V  A  +F +MP RN ++W++M++G+ Q G G EAL
Sbjct: 269 LRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREAL 328

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            +F  M   G +PD    +GVL+AC+ +G++++G K      K   I+  +     +VD+
Sbjct: 329 GLFARMQADGVRPDDTVLVGVLAACAQLGVLEQG-KWVHGYLKANNIRITVFLGTALVDM 387

Query: 230 LGRAGLLEEA 239
             + G ++ A
Sbjct: 388 YAKCGEMQLA 397



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VH  +    +   V + ++LVDMY KCG +  +  VF  M +KN ++ + +++G
Sbjct: 359 LEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKG 418

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F +ME +    D  +F   L AC     +  G+E+    +R+ G K 
Sbjct: 419 LAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKP 478

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            I     +VDL A+ G ++ A ++  +MP++ + + W ++++G
Sbjct: 479 KIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAG 521


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 128/333 (38%), Positives = 201/333 (60%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+E+H  V+  G+  + VV S+L DMY K G +D++  VFD+M  ++ VS +A+L  Y  
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFD 240

Query: 65  TG----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     F   +R+ R     + F++  VLRACA   + +LGK+VH +  +         
Sbjct: 241 AGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFA 300

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALV +Y+K G +  A ++F  MP  +L++W +MISG+AQNG+ +EAL  FD +   G 
Sbjct: 301 GSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGF 360

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PDHV+F+GVLSAC+H GL+D+G   F S+  +Y I+   +HY C++DLL R+GL E AE
Sbjct: 361 RPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAE 420

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            +I     + +  LW  LLG C   +N  +A   A+ + E++P+   +YV L N+Y +VG
Sbjct: 421 DMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTLANIYASVG 480

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            +++   +R  M+  G+ KMP  SWIE  ++++
Sbjct: 481 LFDEVENMRRTMELRGITKMPASSWIEVGTRVH 513



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 7/178 (3%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAG 95
           +FD+M +++  S SA++  + + G   + + I+R M          + F+    L A   
Sbjct: 115 LFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAAATA 174

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
               R G+E+HC  +RR    D ++ SAL D+YAK G +D A  +F +MPVR++++W +M
Sbjct: 175 ARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAM 234

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           +  +   GR  E  R+F  M   G  P+  ++ GVL AC+       G++    M K 
Sbjct: 235 LDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKS 292


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 204/327 (62%), Gaps = 5/327 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QGK+VH+ ++      ++ V SSL+DMY K   + E+ RVFD + +++ VS +A++ GY 
Sbjct: 161 QGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYA 220

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G  E  + +FR++     + +  +F  ++ A +GLA+L  GK+VH   +R+     V 
Sbjct: 221 QKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVA 280

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           ++++L+D+Y+KCG + ++ ++F  M  R++++WN+M+ G+ ++G G E + +F D+ +  
Sbjct: 281 LQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE- 339

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD V+ + VLS CSH GL+D G   F ++ KE        HY C++DLLGR+G LE+A
Sbjct: 340 VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKA 399

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
             LIEN       S+W  LLGAC    N HV E VA+K++E++P+   +YV+L N+Y A 
Sbjct: 400 LNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAA 459

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           G W D FK+R LM    V K PG+SWI
Sbjct: 460 GMWKDVFKVRKLMLEKTVTKEPGQSWI 486



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 147/264 (55%), Gaps = 7/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G++VHA++IT      V + + LV MY +CG +D++  V D+M +++ VS + ++ G
Sbjct: 58  LWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISG 117

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y QT      + +F +M       + ++   VL +C+G  ++  GK+VH   ++ +    
Sbjct: 118 YSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESH 177

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+L+D+YAK   +  A ++F  +P R++++  ++ISG+AQ G  EEAL +F  +  
Sbjct: 178 MFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYS 237

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G + +HV+F  +++A S +  +D G++ H   + KE      ++  N ++D+  + G L
Sbjct: 238 EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQ--NSLIDMYSKCGKL 295

Query: 237 EEAETLIENADCRHDSSLWEVLLG 260
             +  + +N   R   S   +L+G
Sbjct: 296 LYSRRVFDNMLERSVVSWNAMLMG 319



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 68/123 (55%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           + AC    AL  G++VH + I       V + + LV +Y +CG +D A  +  +MP R++
Sbjct: 49  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 108

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ++W +MISG++Q  R  EAL +F  M   G  P+  +   VL++CS    I +G++  + 
Sbjct: 109 VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 168

Query: 210 MTK 212
           + K
Sbjct: 169 LVK 171


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  257 bits (656), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 143/365 (39%), Positives = 202/365 (55%), Gaps = 38/365 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYG----------------------------- 32
           L  G+ VH  V    L  + +V ++L+DMY                              
Sbjct: 119 LSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNG 178

Query: 33  --KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-----EEIDLFS 85
             KC  ++ + R+FD+M  +NSVS +A++ GY Q       + +F+EM     +   + +
Sbjct: 179 FIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVIT 238

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQM 144
              VL  CA + A  LG  VH  Y+ ++    DV + +AL+D+YAK G +  A +IF +M
Sbjct: 239 IVAVLSGCADIGAFDLGSSVH-GYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEM 297

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P R++ +W +MISG A +G+G  AL  F DM++ G  P+ V+ + VLSACSH GL+  GR
Sbjct: 298 PKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGR 357

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
             F  M + + IKPKI+HY CMVDLLGRAGLL EA+ LIE+   + DS +W  LL AC  
Sbjct: 358 SLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLV 417

Query: 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324
             N  +AE   K I+EL+PD    Y+LL N+Y +  RW DA K R  M+   VKK PG S
Sbjct: 418 HGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCS 477

Query: 325 WIEAN 329
           W+E N
Sbjct: 478 WVEVN 482



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 132/309 (42%), Gaps = 39/309 (12%)

Query: 2   LKQGKEVHAKVITLGL-CGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           L++ K++H K +TLGL C     +   L++ Y + G   ++ +VF+ +   + VS + L+
Sbjct: 16  LEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLI 75

Query: 60  QGYCQTGDFESVIRIFREMEEIDLF--SFGIV--LRACAGLAALRLGKEVHCQYIRRSGC 115
             Y  T        IF  +    L   SF +V  + AC     L  G+ VH    R    
Sbjct: 76  SLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELG 135

Query: 116 KDVIIESALVDLYA-------------------------------KCGCVDFAHQIFLQM 144
            D I+ +AL+D+Y+                               KC  ++ A +IF +M
Sbjct: 136 SDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEM 195

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           P+RN ++W +MI+G+ Q       L +F +M  EG   P  ++ + VLS C+ +G  D G
Sbjct: 196 PMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLG 255

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
                 + K   +   +   N ++D+  ++G L  A  + +    R   S   ++ G   
Sbjct: 256 SSVHGYVNKT-NLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLAL 314

Query: 264 TFRNAHVAE 272
             +  H  E
Sbjct: 315 HGKGTHALE 323



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 17/197 (8%)

Query: 85  SFGIVLRACAGLAALRL--GKEVH----CQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
           +F  +L+ C  L  L+   GK V     C   +   CK       L++ Y + G    A 
Sbjct: 5   TFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACK-------LLNTYTQLGSPVDAQ 57

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F  +   ++++W  +IS +    +  +A  IF  +   G +PD    +G +SAC H  
Sbjct: 58  KVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRK 117

Query: 199 LIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
            +  GR  H      E    P +   N ++D+  R+G +E A ++ +  + + D S W  
Sbjct: 118 DLSNGRIVHGMVFRFELGSDPIVG--NALIDMYSRSGAIEVACSVFKTMEIK-DVSSWTS 174

Query: 258 LLGACTTFRNAHVAERV 274
           LL       +   A R+
Sbjct: 175 LLNGFIKCNDIEAARRI 191


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  257 bits (656), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 205/335 (61%), Gaps = 4/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+H  +  +G   N+VV ++LVDMY KCG + +S +VF+ M  ++ ++ + ++  
Sbjct: 432 LHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS 491

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
              + D    +R+   M       D+ +   +L  C+ LAA R GKE+H    +     D
Sbjct: 492 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD 551

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + L+++Y+KCG +  + Q+F  M  ++++TW ++IS     G G++A+R F +M  
Sbjct: 552 VPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEA 611

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PDHV+F+ ++ ACSH GL++ G  +F  M K+Y+I+P+IEHY C+VDLL R+ LL+
Sbjct: 612 AGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLD 671

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +AE  I +   + DSS+W  LL AC    +  +AERV+++I+EL PD    YVL+ N+Y 
Sbjct: 672 KAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYA 731

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           A+G+W+    IR  +K  G+KK PG SW+E  +K+
Sbjct: 732 ALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKV 766



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 156/281 (55%), Gaps = 8/281 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G  +H  +  +G+  +V+V + L+ MY K   + +  R+FDKM+ +++VS + ++ G
Sbjct: 232 VEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICG 291

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-D 117
           Y Q G +E  I++F EM    + DL +   +L+AC  L  L  GK VH  Y+  SG + D
Sbjct: 292 YSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVH-DYMITSGYECD 350

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               + L+++YAKCG +  + ++F  M  ++ ++WNSMI+ + QNG  +EA+++F  M +
Sbjct: 351 TTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMK 409

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+++ +LS  + +G +  G++    + K       I   N +VD+  + G + 
Sbjct: 410 TDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAK-MGFNSNIVVSNTLVDMYAKCGEMG 468

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           ++  + EN   R D   W  ++ +C    + ++  R+  ++
Sbjct: 469 DSLKVFENMKAR-DIITWNTIIASCVHSEDCNLGLRMISRM 508



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 162/305 (53%), Gaps = 11/305 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            +  K +H +V+ +G   ++ + ++L+DMY +   +D++ +VF++M  ++ VS ++L+ G
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 190

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G +   + I+     +    D ++   VLRAC GL ++  G  +H    +    KD
Sbjct: 191 YNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKD 250

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           VI+ + L+ +Y K   +    +IF +M +R+ ++WN+MI G++Q G  EE++++F +M  
Sbjct: 251 VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN 310

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              KPD ++   +L AC H+G ++ G+  H   +T  Y         N ++++  + G L
Sbjct: 311 -QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS--NILINMYAKCGNL 367

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI-MELKPDCHLSYVLLDNV 295
             ++ +     C+ DS  W  ++       +   A ++ K +  ++KPD  ++YV+L ++
Sbjct: 368 LASQEVFSGMKCK-DSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPD-SVTYVMLLSM 425

Query: 296 YRAVG 300
              +G
Sbjct: 426 STQLG 430



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 149/294 (50%), Gaps = 8/294 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH  +IT G   +    + L++MY KCG +  S  VF  M  K+SVS ++++  
Sbjct: 332 LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINV 391

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y Q G F+  +++F+ M+   + D  ++ ++L     L  L LGKE+HC   +     ++
Sbjct: 392 YIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNI 451

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ + LVD+YAKCG +  + ++F  M  R++ITWN++I+    +      LR+   M   
Sbjct: 452 VVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTE 511

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  PD  + + +L  CS +    +G++    + K   ++  +   N ++++  + G L  
Sbjct: 512 GVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRN 570

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
           +  + +    + D   W  L+ AC  +     A R   ++    + PD H+++V
Sbjct: 571 SFQVFKLMKTK-DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPD-HVAFV 622



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 5/205 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SALLQGY 62
           Q  ++H+ +ITLGL  +V+  + L+  Y        S  VF      N+V   +++++  
Sbjct: 31  QLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRAL 90

Query: 63  CQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G F   + ++ E + I    D ++F  V+ ACAGL    + K +H + +      D+
Sbjct: 91  THNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDL 150

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            I +AL+D+Y +   +D A ++F +MP+R++++WNS+ISG+  NG   EAL I+      
Sbjct: 151 YIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNL 210

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRG 203
           G  PD  +   VL AC  +G ++ G
Sbjct: 211 GVVPDSYTMSSVLRACGGLGSVEEG 235


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  256 bits (655), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 209/338 (61%), Gaps = 8/338 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GKE+HA +   G   +V + ++LVDMY + G VD +  VF  M  +N VS SA++  
Sbjct: 198 LMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIAC 257

Query: 62  YCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           Y + G     +R FREM         +  +   VL+ACA LAAL  GK +H  YI R G 
Sbjct: 258 YAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIH-GYILRRGL 316

Query: 116 KDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             ++ + SALV +Y +CG ++   ++F +M  R++++WNS+IS +  +G G++A++IF++
Sbjct: 317 DSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEE 376

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G  P  V+F+ VL ACSH GL++ G++ F +M +++ IKP+IEHY CMVDLLGRA 
Sbjct: 377 MLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRAN 436

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L+EA  ++++        +W  LLG+C    N  +AER ++++  L+P    +YVLL +
Sbjct: 437 RLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLAD 496

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +Y     W++  +++ L+++ G++K+PG+ W+E   K+
Sbjct: 497 IYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKM 534



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 140/272 (51%), Gaps = 16/272 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L     VH  ++  G   +  + + L+ MY   G VD + +VFDK  K+     +AL + 
Sbjct: 93  LSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRA 152

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAG----LAALRLGKEVHCQYIRRS 113
               G  E V+ ++ +M  I    D F++  VL+AC      +  L  GKE+H    RR 
Sbjct: 153 LTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRG 212

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
               V I + LVD+YA+ GCVD+A  +F  MPVRN+++W++MI+ +A+NG+  EALR F 
Sbjct: 213 YSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFR 272

Query: 174 DMTE--GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY--RIKPKIEHYNCMVDL 229
           +M      + P+ V+ + VL AC+ +  +++G+     + +     I P I   + +V +
Sbjct: 273 EMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI---SALVTM 329

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            GR G LE  + + +    R D   W  L+ +
Sbjct: 330 YGRCGKLEVGQRVFDRMHDR-DVVSWNSLISS 360



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 110/250 (44%), Gaps = 6/250 (2%)

Query: 53  VSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           +S++ L+Q  C+ G  +  IR+  +       ++ +++  C   ++L     VH   +  
Sbjct: 47  ISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDN 106

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
              +D  + + L+ +Y+  G VD+A ++F +   R +  WN++       G GEE L ++
Sbjct: 107 GSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLY 166

Query: 173 DDMTEGGTKPDHVSFIGVLSAC----SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
             M   G + D  ++  VL AC      +  + +G++  A +T+       +     +VD
Sbjct: 167 WKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRR-GYSSHVYIMTTLVD 225

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288
           +  R G ++ A  +      R+  S W  ++        A  A R  +++M    D   +
Sbjct: 226 MYARFGCVDYASYVFGGMPVRNVVS-WSAMIACYAKNGKAFEALRTFREMMRETKDSSPN 284

Query: 289 YVLLDNVYRA 298
            V + +V +A
Sbjct: 285 SVTMVSVLQA 294


>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 478

 Score =  256 bits (655), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 204/375 (54%), Gaps = 47/375 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K+G++VHA V+  G C NV V++SL+  Y   G V+ +  VFD M +++ VS +++L G
Sbjct: 57  VKEGEQVHATVLVKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAG 116

Query: 62  YCQTGDFESVIRIFREME-----------------------------------EIDLFSF 86
           Y +  DF+   R+F  M                                    E+D  + 
Sbjct: 117 YVRCADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVAL 176

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKD-----VIIESALVDLYAKCGCVDFAHQIF 141
              L ACA L  L+LG+ +H    +R   ++     V + +AL+ +YA CG +  A+Q+F
Sbjct: 177 VAALSACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVF 236

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-----PDHVSFIGVLSACSH 196
           ++MP ++ ++W SMI  FA+ G G+EAL +F  M   G K     PD ++FIGVL ACSH
Sbjct: 237 VKMPRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVKVDGVRPDEITFIGVLCACSH 296

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            G +D G + FASM   + I P IEHY CMVDLL RAGLL+EA  LIE      + ++W 
Sbjct: 297 AGFVDEGHQIFASMKHTWGISPSIEHYGCMVDLLSRAGLLDEARGLIETMPLNPNDAIWG 356

Query: 257 VLLGACTTFRNAHVAERVAKKIM-ELKPDCHLSY-VLLDNVYRAVGRWNDAFKIRTLMKY 314
            LLG C   RN+ +A +V  K++ EL  D    Y VLL N+Y    RW D   +R  M  
Sbjct: 357 ALLGGCRIHRNSELASQVENKLVPELNGDQAAGYLVLLSNIYAFGQRWQDVITVRQKMIE 416

Query: 315 SGVKKMPGKSWIEAN 329
            GVKK PG+SWI+ N
Sbjct: 417 MGVKKPPGRSWIQIN 431



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 39/221 (17%)

Query: 58  LLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +++GY ++      +  +  M     E D F+   +L ACA    ++ G++VH   + + 
Sbjct: 12  VIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEGEQVHATVLVKG 71

Query: 114 GCKDVIIESALVDLYAKCG-----------------------------CVDF--AHQIFL 142
            C +V ++++L+  YA  G                             C DF  A ++F 
Sbjct: 72  YCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRCADFDGARRVFD 131

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            MP RN+++W +M++G A+NG+  +AL +F +M     + D V+ +  LSAC+ +G +  
Sbjct: 132 VMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAALSACAELGDLKL 191

Query: 203 GRKHFASMTKEYRIK----PKIEHYNCMVDLLGRAGLLEEA 239
           GR     + + +  +    P +   N ++ +    G+L EA
Sbjct: 192 GRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEA 232



 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASM 210
           WN +I G+A++    +A+  +  M     +PD  +   +LSAC+  GL+  G + H   +
Sbjct: 9   WNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEGEQVHATVL 68

Query: 211 TKEY 214
            K Y
Sbjct: 69  VKGY 72


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 200/336 (59%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VH K I  GL  +  V S++VDMY KCG + E+ ++ D++  +  VS ++++ G
Sbjct: 470 LEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISG 529

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +  T   E   R F EM ++    D F++  VL  CA LA + LGK++H Q I++    D
Sbjct: 530 FSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGD 589

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I S LVD+YAKCG +  +  +F +    + ++WN+MI G+A +G+G EAL +F+ M  
Sbjct: 590 EYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQR 649

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+H +F+ VL ACSH+GL+D G ++F  MT  Y++ P++EH+ CMVD+LGR+   +
Sbjct: 650 ANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQ 709

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I +     D+ +W+ LL  C   ++  VAE  A  ++ L PD    Y+LL NVY 
Sbjct: 710 EALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETAASNVLRLDPDDASVYILLSNVYA 769

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W D  + R LM+   ++K PG SWIE  S+++
Sbjct: 770 GSGKWVDVSRTRRLMRQGRLRKEPGCSWIEVQSEMH 805



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 141/247 (57%), Gaps = 5/247 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QG +VH   +  G   +V V ++++D+YGKC  + E++ VF +M +++SVS +A++    
Sbjct: 371 QGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALE 430

Query: 64  QTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q   +E  I    EM     E D F++G VL+ACAGL +L  G  VH + I+     D  
Sbjct: 431 QNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAF 490

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + S +VD+Y KCG +  A ++  ++  + L++WNS+ISGF+   + EEA R F +M + G
Sbjct: 491 VSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMG 550

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPDH ++  VL  C+++  I+ G++    + K+  +  +    + +VD+  + G + ++
Sbjct: 551 VKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYIS-STLVDMYAKCGNMPDS 609

Query: 240 ETLIENA 246
             + E A
Sbjct: 610 LLMFEKA 616



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 139/265 (52%), Gaps = 8/265 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++HA  +  GL  +V   S+LVDMYGKC  +D++ R F  M ++NSVS  A + G
Sbjct: 167 LALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAG 226

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q   +   + +F +M+ + L     ++    R+CA +  L   +++H   I+     D
Sbjct: 227 CVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSD 286

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ +A+VD+YAK G +  A + F+ +P  N+ T N+M+ G  + G G EA+++F  MT 
Sbjct: 287 RVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTR 346

Query: 178 GGTKPDHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G   D +S  GV SAC+ + G     + H  ++   + +   +   N ++DL G+   L
Sbjct: 347 SGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVR--NAILDLYGKCKAL 404

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
            EA  + +  + R DS  W  ++ A
Sbjct: 405 VEAYLVFQEMEQR-DSVSWNAIIAA 428



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 148/299 (49%), Gaps = 19/299 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   +++HA  I      + VV +++VD+Y K G + ++ R F  +   N  + +A++ G
Sbjct: 268 LSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVG 327

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             +TG     +++F+ M       D+ S   V  ACA +     G +VHC  ++     D
Sbjct: 328 LVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVD 387

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +A++DLY KC  +  A+ +F +M  R+ ++WN++I+   QN   E+ +   ++M  
Sbjct: 388 VCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLR 447

Query: 178 GGTKPDHVSFIGVLSACSHM-----GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            G +PD  ++  VL AC+ +     GL+  G+   + +  +  +   +      VD+  +
Sbjct: 448 SGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTV------VDMYCK 501

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPDCHLSY 289
            G + EA+ L +    +   S W  ++   +  + +  A+R   +++++  KPD H +Y
Sbjct: 502 CGAITEAQKLHDRIGGQELVS-WNSIISGFSLTKQSEEAQRFFSEMLDMGVKPD-HFTY 558



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 118/273 (43%), Gaps = 36/273 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+  HA+++  G      V + L+ MY +CG    +H VFD M  +++VS + +L  
Sbjct: 35  LTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTA 94

Query: 62  YCQTGDFESVIRIFREMEEIDLFSF----------------------------------- 86
           Y   GD ++   +F  M + D+ S+                                   
Sbjct: 95  YVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTL 154

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            ++L++C GL  L LG ++H   ++     DV   SALVD+Y KC  +D A + F  M  
Sbjct: 155 AVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGE 214

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN ++W + I+G  QN +    + +F  M   G      ++     +C+ M  +   R+ 
Sbjct: 215 RNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQL 274

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            A   K      ++     +VD+  +AG L +A
Sbjct: 275 HAHAIKNVFSSDRVVG-TAIVDVYAKAGNLVDA 306



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           FS    L A AG +AL  G+  H + +         + + L+ +YA+CG    AH +F  
Sbjct: 20  FSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDT 79

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA-CSH 196
           MP R+ ++WN+M++ +   G  + A  +F  M +    PD VS+  ++S  C H
Sbjct: 80  MPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPD----PDVVSWNTLISGYCQH 129


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 203/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VH   +  GL  +  V + L+ MY K G +D   ++FD+M +K  ++ +A++ G
Sbjct: 129 LGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMING 188

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G   +V+ +++EME      D  +   VL +CA L AL +GKEV  +        +
Sbjct: 189 YAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSN 248

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +ALV++YA+CG +  A  IF  MPV+++++W ++I G+  +G+GE A+ +FD+M  
Sbjct: 249 PFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIR 308

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           GG KPD  +F+ VLSACSH GL ++G  +F  M ++Y ++P  EHY+CMVDLLGRAG L 
Sbjct: 309 GGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLN 368

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LIE+   R D +LW  LLGAC   RN  +AE   ++++EL+P     YVLL NVY 
Sbjct: 369 EARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYT 428

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G      ++R LM+   +KK PG S++E   +++
Sbjct: 429 EAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVH 464



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 150/289 (51%), Gaps = 12/289 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDK--MLKKNSVSSSALLQGY 62
           GK++H  V   G      V++SL+ MYGKC L+D + ++FD+    +K +V  ++LL GY
Sbjct: 29  GKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGY 88

Query: 63  CQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKDV 118
                 + V+ +F EM E+ +   G+ +    + C     L LG  VH   ++     D 
Sbjct: 89  ALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDS 148

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + L+ +Y K G +D   ++F +MP + LITWN+MI+G+AQNG     L ++ +M   
Sbjct: 149 SVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESK 208

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  PD ++ +GVLS+C+H+G +  G++    M    +   P +   N +V++  R G L+
Sbjct: 209 GFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLN--NALVNMYARCGNLK 266

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           +A  + +    +   S W  ++G         VA  +  +++   +KPD
Sbjct: 267 KARDIFDGMPVKSVVS-WTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPD 314



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 73/132 (55%), Gaps = 2/132 (1%)

Query: 74  IFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133
           + R     + F+F   +++CA L+    GK++HC   +     +  ++++L+ +Y KC  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 134 VDFAHQIFLQMPVRNLIT--WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           +D A ++F + P    +T  +NS++SG+A N R ++ + +F +M E G + + V+ +G++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 192 SACSHMGLIDRG 203
             C   G +  G
Sbjct: 121 QPCGIPGNLGLG 132


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 210/366 (57%), Gaps = 36/366 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  K+VH +V+  G   N+V+ SS+VD Y KCG +  +  +FD+ML K+  + + ++ G
Sbjct: 211 LQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSG 270

Query: 62  YCQTGDFESVIRIFREMEE----------------------IDLFS----FGI------- 88
           Y + GD  S   +F +M E                      +D F+    FGI       
Sbjct: 271 YAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTF 330

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF-LQMP 145
              L ACA +AAL+ GK+VH   IR     + I+ S+L+D+Y+KCG ++ +  +F L   
Sbjct: 331 SSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGN 390

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            ++++ WN+MIS  AQNG GE+A+++F+DM E G KPD ++FI +LSACSH GL+  G +
Sbjct: 391 KQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLR 450

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F +MT ++ + P  EHY C++DLLGRAG   E    +EN  C+ D  +W  LLG C   
Sbjct: 451 FFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIH 510

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  +  +VA++++ELKP    +YV L ++Y  +G+W    K+R LM    ++K  G SW
Sbjct: 511 NNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISW 570

Query: 326 IEANSK 331
           I+  +K
Sbjct: 571 IDVGNK 576



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 167/348 (47%), Gaps = 40/348 (11%)

Query: 5   GKEVHA-KVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G++V A KV       N+   + ++  Y K G V+ + ++FD+M++K+ VS + ++  Y 
Sbjct: 112 GRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYA 171

Query: 64  QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           + G F   I ++R+   +D+    FSF  VL  C  L  L+L K+VH Q +      +++
Sbjct: 172 KQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLV 231

Query: 120 IESALVDLYAKCG---C----------------------------VDFAHQIFLQMPVRN 148
           + S++VD Y+KCG   C                            ++ A ++F QMP +N
Sbjct: 232 LSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKN 291

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
            ++W+++ISG+A+N  G EAL  F  M + G  P+  +F   L AC+ +  +  G++   
Sbjct: 292 PVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHG 351

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            + + Y  +      + ++D+  + G+LE +  +      + D  +W  ++ A     + 
Sbjct: 352 YLIRTY-FRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHG 410

Query: 269 HVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
             A ++   ++E  LKPD  ++++++ +     G   +  +    M Y
Sbjct: 411 EKAMQMFNDMVESGLKPD-RITFIVILSACSHSGLVQEGLRFFKAMTY 457



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 7/120 (5%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCK--DVIIESALVDLYAKCGCVDFAHQIFLQ 143
           F  +LR CA     + GK VH  +++ +G K    I+ + L+ +Y +CG    A ++F +
Sbjct: 65  FVDLLRLCAKAKYFKGGKCVHL-HLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDK 123

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           M VRNL +WN M++G+A+ G    A ++FD M E     D VS+  ++ A +  G  +  
Sbjct: 124 MSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMME----KDVVSWNTIVLAYAKQGCFNEA 179


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 131/334 (39%), Positives = 206/334 (61%), Gaps = 6/334 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            +QGK++H   I LGL  N  V  +L++MY  C  VD + RVFD++L+   VS +A++ G
Sbjct: 143 FQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITG 202

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           Y ++      + +FR+++   L    +    VL +CA L AL LGK +H +Y++++G  K
Sbjct: 203 YARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIH-EYVKKNGLDK 261

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V + +AL+D+YAKCG +D A  +F  M VR+   W++MI  +A +G+G++ + +F++M 
Sbjct: 262 YVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMA 321

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               +PD ++F+G+L ACSH GL+D G ++F SM++ Y I P I+HY CMVDLLGRAGLL
Sbjct: 322 RAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLL 381

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EA   I+    +    LW  LL +C++  N  +A++V  +I+EL       YV+L N+ 
Sbjct: 382 HEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLC 441

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
              G+W D   +R LM + G  K+PG S IE ++
Sbjct: 442 ARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDN 475



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 143/271 (52%), Gaps = 17/271 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVD---MYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           LK+ K++ A  I   L  ++ + + L++          +D +H++F+ + + + V  +++
Sbjct: 39  LKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSM 98

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
            +GY ++      I +F +    +L    ++F  +L+AC    A + GK++HC  I+   
Sbjct: 99  FRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGL 158

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            ++  +   L+++YA C  VD A ++F ++    ++++N++I+G+A++ R  EAL +F  
Sbjct: 159 NENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQ 218

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLL 230
           +     KP+ V+ + VLS+C+ +G +D G+        EY  K  ++ Y      ++D+ 
Sbjct: 219 LQARKLKPNDVTVLSVLSSCALLGALDLGK-----WIHEYVKKNGLDKYVKVNTALIDMY 273

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            + G L+ A ++ E+   R D+  W  ++ A
Sbjct: 274 AKCGSLDGAISVFESMSVR-DTQAWSAMIVA 303


>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
 gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
          Length = 703

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 133/330 (40%), Positives = 191/330 (57%), Gaps = 5/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++ H  V+  G   +V V +S+VD YGKC    ++  VFD M  +NSVS  +++  
Sbjct: 236 LSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAA 295

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E     +    R  EE   F     L  CAGL  L LG+ +H   +R     +
Sbjct: 296 YAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDAN 355

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + SALVD+Y KCGCV+ A QIF + P RNL+TWN+MI G+A  G  + AL +FDDM  
Sbjct: 356 IFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIR 415

Query: 178 GG-TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G T P++++ + V+++CS  GL   G + F +M + + I+P+ EHY C+VDLLGRAG+ 
Sbjct: 416 SGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGME 475

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E+A  +I+    R   S+W  LLGAC       +    A+K+ EL P    ++VLL N++
Sbjct: 476 EQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMF 535

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
            + GRW +A  IR  MK  G+KK PG SW+
Sbjct: 536 ASAGRWAEATDIRKEMKNVGIKKDPGCSWV 565



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 138/305 (45%), Gaps = 14/305 (4%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G ++H+  I  G L  +  V  + +DMY K G +  +  +F +M  +N V+ +A++    
Sbjct: 137 GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAV 196

Query: 64  QTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             G     I  +  + E     ++ S      ACAG   L LG++ H   ++     DV 
Sbjct: 197 LDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVS 256

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +++VD Y KC C   A  +F  M VRN ++W SM++ +AQNG  EEA   +      G
Sbjct: 257 VLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSG 316

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +P        L+ C+ +  +  GR   A   +   I   I   + +VD+ G+ G +E+A
Sbjct: 317 EEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSC-IDANIFVASALVDMYGKCGCVEDA 375

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM---ELKPDCHLSYVLLDNVY 296
           E +      R+  + W  ++G      +A  A  V   ++   E  P+    Y+ L NV 
Sbjct: 376 EQIFYETPQRNLVT-WNAMIGGYAHIGDAQNALLVFDDMIRSGETAPN----YITLVNVI 430

Query: 297 RAVGR 301
            +  R
Sbjct: 431 TSCSR 435



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 100 RLGKEVHCQYIRR-SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
           RLG+  H + +R  +      I + LV+LY+K      A       P   ++++ + ISG
Sbjct: 32  RLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISG 91

Query: 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            AQ+GR   AL  F  M   G +P+  +F     A +
Sbjct: 92  AAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAA 128


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 210/333 (63%), Gaps = 7/333 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++H  ++ +GL  +V V S+L+D Y K G   ++  VF++M+  + V  ++++ G+ Q 
Sbjct: 134 RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQN 193

Query: 66  GDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
            D +  + +++ M+  D      +   VLRAC GLA L LG++VH   ++    +D+I+ 
Sbjct: 194 SDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYD--QDLILN 251

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           +AL+D+Y KCG ++ A+ +F +M   +++I+W++MI+G AQNG   +AL++F+ M   G 
Sbjct: 252 NALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGP 311

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP++++ +GVL ACSH GL++ G  +F SM + + I P  EHY C++DLLGRAG L+EA 
Sbjct: 312 KPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAV 371

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LI   +   D+  W +LLGAC   +N  +A   AK+I++L P    +Y+LL N+Y    
Sbjct: 372 KLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQ 431

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W D  ++R  M+  GVKK PG SWIE + +++
Sbjct: 432 KWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVH 464



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 133/264 (50%), Gaps = 10/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++Q + VH  V + G      + ++L++MY K GL+DE+  +FD+M  +N VS + ++  
Sbjct: 32  VQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISA 91

Query: 62  YCQTG----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y  +       + +I + RE    +++++  VLRAC GL  LR   ++H   ++     D
Sbjct: 92  YSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLR---QLHGSILKVGLESD 148

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D Y+K G    A  +F +M   +L+ WNS+I GFAQN  G+E L ++  M  
Sbjct: 149 VFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKR 208

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
                D  +   VL AC+ + L++ GR+    + K       +   N ++D+  + G LE
Sbjct: 209 ADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK---YDQDLILNNALLDMYCKCGSLE 265

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           +A  L        D   W  ++  
Sbjct: 266 DANLLFTRMMTEKDVISWSTMIAG 289



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 108/263 (41%), Gaps = 35/263 (13%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D  ++  +++ C    A++  + VH             + + L+++Y K G +D A  +F
Sbjct: 15  DAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLF 74

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM---- 197
            +MP RN+++W +MIS ++ +    +AL     M   G +P+  ++  VL AC  +    
Sbjct: 75  DEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLR 134

Query: 198 -------------------GLIDR----GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
                               LID     G +H A       I   +  +N ++   G A 
Sbjct: 135 QLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIG--GFAQ 192

Query: 235 LLEEAETL-----IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY 289
             +  ETL     ++ AD   D S    +L ACT      +  +V   +++   D  L+ 
Sbjct: 193 NSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNN 252

Query: 290 VLLDNVYRAVGRWNDAFKIRTLM 312
            LLD +Y   G   DA  + T M
Sbjct: 253 ALLD-MYCKCGSLEDANLLFTRM 274


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 206/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GKE+H  +I   L  + VV S+L+D+YGKCG +DE+  +FD+M  ++ VS + ++  
Sbjct: 236 LRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHR 295

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G  E    +FR++ +  +    ++F  VL ACA  AA  LGKEVH   +       
Sbjct: 296 CFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPG 355

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               SALV +Y+KCG    A ++F +M   +L++W S+I G+AQNG+ +EAL  F+ + +
Sbjct: 356 SFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQ 415

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GTKPD V+++GVLSAC+H GL+D+G ++F S+ +++ +    +HY C++DLL R+G  +
Sbjct: 416 SGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFK 475

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE +I+N   + D  LW  LLG C    N  +A+R AK + E++P+   +Y+ L N+Y 
Sbjct: 476 EAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYA 535

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G W++   +R  M   G+ K PGKSWIE   +++
Sbjct: 536 NAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVH 571



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 36/230 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ VHA          V + + L+DMY KCG + ++  +FD+M  ++  S + ++ G
Sbjct: 103 LELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVG 162

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL-----------------------RACAG--- 95
           Y + G  E   ++F EM + D FS+   +                       R+ +    
Sbjct: 163 YAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFT 222

Query: 96  ----------LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
                     +  LRLGKE+H   IR     D ++ SAL+DLY KCG +D A  IF QM 
Sbjct: 223 LSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMK 282

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            R++++W +MI    ++GR EE   +F D+ + G +P+  +F GVL+AC+
Sbjct: 283 DRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACA 332



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 56/92 (60%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  ++ AC    AL LG+ VH      +    V I + L+D+YAKCG +  A  +F +M 
Sbjct: 90  YSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMG 149

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            R+L +WN+MI G+A+ GR E+A ++FD+M +
Sbjct: 150 HRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQ 181


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 198/330 (60%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GKE+HA+    GL  +V   ++L++MY K G + ++ +VFD+M K++ VS + LL  
Sbjct: 347 LARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGR 406

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y            F++M +     +  ++  VL+AC+   AL+ GKE+H + ++     D
Sbjct: 407 YADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLAD 466

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+ +Y KCG V+ A ++F  M +R+++TWN++I G  QNGRG EAL+ ++ M  
Sbjct: 467 LAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKS 526

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+  +F+ VLSAC    L++ GR+ FA M+K+Y I P  +HY CMVD+L RAG L 
Sbjct: 527 EGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLR 586

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE +I     +  +++W  LL AC    N  + ER A+  ++L+P     YV L  +Y 
Sbjct: 587 EAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYA 646

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           A G W D  K+R  MK  GVKK PG+SWIE
Sbjct: 647 AAGMWRDVAKLRKFMKERGVKKEPGRSWIE 676



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 141/263 (53%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+H +V+  GL  +  V ++L+ MY KCG V ++ RVFD M  ++ VS + L   
Sbjct: 145 LNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 204

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y ++G  E  ++ +  M +  +     ++  VL AC  LAAL  GK++H   +      D
Sbjct: 205 YAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSD 264

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL  +Y KCG    A ++F  +  R++I WN+MI GF  +G+ EEA   F  M E
Sbjct: 265 VRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLE 324

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD  ++  VLSAC+  G + RG++  A   K+  +   +   N ++++  +AG ++
Sbjct: 325 EGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVS-DVRFGNALINMYSKAGSMK 383

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +A  + +    R D   W  LLG
Sbjct: 384 DARQVFDRMPKR-DVVSWTTLLG 405



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 141/263 (53%), Gaps = 8/263 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+VH  ++  G+  NV + ++L+ +Y  CG V+E+ ++FDK   K+ VS + ++ G
Sbjct: 44  LAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISG 103

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +    +F  M+    E D F+F  +L AC+  A L  G+E+H + +      D
Sbjct: 104 YAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLAND 163

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ +YAKCG V  A ++F  M  R+ ++W ++   +A++G GEE+L+ +  M +
Sbjct: 164 TTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQ 223

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              +P  ++++ VLSAC  +  +++G++ H   +  EY    ++     +  +  + G  
Sbjct: 224 ERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVS--TALTKMYMKCGAF 281

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           ++A  + E    R D   W  ++
Sbjct: 282 KDAREVFECLSYR-DVIAWNTMI 303



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 137/263 (52%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++HA ++      +V V ++L  MY KCG   ++  VF+ +  ++ ++ + +++G
Sbjct: 246 LEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRG 305

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +  +G  E     F  M E     D  ++  VL ACA    L  GKE+H +  +     D
Sbjct: 306 FVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSD 365

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   +AL+++Y+K G +  A Q+F +MP R++++W +++  +A   +  E+   F  M +
Sbjct: 366 VRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQ 425

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K + ++++ VL ACS+   +  G++  A + K   +   +   N ++ +  + G +E
Sbjct: 426 QGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKA-GLLADLAVTNALMSMYFKCGSVE 484

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +A  + E    R D   W  L+G
Sbjct: 485 DAIRVFEGMSMR-DVVTWNTLIG 506



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 74  IFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCG 132
           + R+  ++D + +  +L++C     L +GK+VH ++I R G K +V I + L+ LYA CG
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVH-EHILRCGVKPNVYITNTLLKLYAHCG 77

Query: 133 CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
            V+ A Q+F +   +++++WN MISG+A  G  +EA  +F  M +   +PD  +F+ +LS
Sbjct: 78  SVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILS 137

Query: 193 ACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           ACS   +++ GR+ H   M  E  +       N ++ +  + G + +A  + +    R +
Sbjct: 138 ACSSPAVLNWGREIHVRVM--EAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDE 195

Query: 252 SSLWEVLLGA 261
            S W  L GA
Sbjct: 196 VS-WTTLTGA 204


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 204/335 (60%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G++VH+ +   GL  N+ + ++L+D+Y KCG V+ +  +F  +  K+ +S + ++ G
Sbjct: 251 IQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGG 310

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR-SGCK 116
           Y     ++  + +F+EM    E  +  +   +L ACA L A+  G+ +H    +R  G  
Sbjct: 311 YTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVT 370

Query: 117 DVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +   + ++L+D+YAKCG ++ AHQ+F  M  R L   N+MI GFA +GR   A  IF  M
Sbjct: 371 NASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRM 430

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G +PD ++F+G+LSACSH G++D GR+ F SMT+ Y+I PK+EHY CM+DLLG  GL
Sbjct: 431 RKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGL 490

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            +EAE +I       D  +W  LL AC    N  + E  A+K+++++P+   SYVLL N+
Sbjct: 491 FKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNI 550

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           Y   GRWN+   IR L+   G+KK+PG S IE +S
Sbjct: 551 YATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDS 585



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 36/294 (12%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K+G+++H  V+ LG   ++ V +SL+ MY K G   ++H+VFD    ++ VS +AL+ GY
Sbjct: 120 KEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGY 179

Query: 63  CQTGDFESVIRIFREM----------------------EEIDLF-------------SFG 87
              G  ES  ++F E+                      E +DLF             +  
Sbjct: 180 ASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMV 239

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
            V+ ACA   +++LG++VH          ++ I +AL+DLY+KCG V+ A  +F  +  +
Sbjct: 240 TVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNK 299

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           ++I+WN+MI G+      +EAL +F +M   G  P+ V+ + +L AC+ +G ID GR   
Sbjct: 300 DVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIH 359

Query: 208 ASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             + K  + +         ++D+  + G +E A  +  +   R  S+   ++ G
Sbjct: 360 VYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFG 413



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 147/303 (48%), Gaps = 46/303 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL------VDESHRVFDKMLKKNSVSS 55
           L+  + +HA++I  GL       S L++    C L      +  +  VF+ + + N +  
Sbjct: 15  LQSLRIIHAQMIKTGLHNTNYALSRLLEF---CILSPNFDGLPYAISVFETIQEPNLLIW 71

Query: 56  SALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVH----- 106
           + + +G+  + D  S I+++  M  + L    ++F  +L++CA L   + G+++H     
Sbjct: 72  NTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLK 131

Query: 107 --------------CQYIRR------------SGCKDVIIESALVDLYAKCGCVDFAHQI 140
                           Y++             S  +DV+  +AL+  YA  G ++ A ++
Sbjct: 132 LGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKM 191

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F ++PV+++++WN++ISG+A  G  +EAL +F +M +   KPD  + + V+SAC+  G I
Sbjct: 192 FDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSI 251

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             GR+   S   ++ +   ++  N ++DL  + G +E A  L +    + D   W  ++G
Sbjct: 252 QLGRQ-VHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNK-DVISWNTMIG 309

Query: 261 ACT 263
             T
Sbjct: 310 GYT 312


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 133/309 (43%), Positives = 190/309 (61%), Gaps = 8/309 (2%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----- 79
           ++L+  + + G V ++  +FD+M ++N+VS SA++ GY Q GD    + +F +M+     
Sbjct: 163 NTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVR 222

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAH 138
             D    G VL ACA L AL  GK VH  Y++ +  +  V + +ALVD+YAKCG V    
Sbjct: 223 PDDTVLVG-VLAACAQLGALEQGKWVH-GYLKANNIRMTVFLGTALVDMYAKCGEVQLGM 280

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F  M  +N++ W +MI G A +GRG ++L +F  M   G KPD ++FIG L AC+H G
Sbjct: 281 EVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTG 340

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           L+D+GR+ F SM   Y IKPKIEHY CMVDLL R GLL EA  ++E    + D+ +W  L
Sbjct: 341 LVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGAL 400

Query: 259 LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
           +  C   +N  +AE V K  +EL+PD   +YVLL N+Y A GR   A +IR LM+  GV+
Sbjct: 401 MAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVE 460

Query: 319 KMPGKSWIE 327
           K PG S +E
Sbjct: 461 KTPGCSNVE 469



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           +R S   D    + L+  +A+ G V  A  +F +MP RN ++W++M++G+ Q G G EAL
Sbjct: 151 LRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREAL 210

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            +F  M   G +PD    +GVL+AC+ +G +++G K      K   I+  +     +VD+
Sbjct: 211 GVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQG-KWVHGYLKANNIRMTVFLGTALVDM 269

Query: 230 LGRAG 234
             + G
Sbjct: 270 YAKCG 274



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VH  +    +   V + ++LVDMY KCG V     VF+ M  KN ++ + +++G
Sbjct: 241 LEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKG 300

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F +ME    + D  +F   L AC     +  G+E+    +   G K 
Sbjct: 301 LAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKP 360

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            I     +VDL A+ G +  A  +  +MP++ + + W ++++G
Sbjct: 361 KIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAG 403


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 134/320 (41%), Positives = 191/320 (59%), Gaps = 5/320 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+   ++L+D Y +   VD +  +F++M  ++ +S + ++  Y Q   F   + +F EM 
Sbjct: 176 NLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMA 235

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           +     D  +   V+ ACA L AL LGKE+H   ++     DV I SAL+D+YAKCG +D
Sbjct: 236 KHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLD 295

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            +  +F ++  +NL  WNS+I G A +G  EEAL +FD M     KP+ V+F+ VLSAC+
Sbjct: 296 RSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACN 355

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H GLI+ GRK FASMT+++ I P +EHY CMVDLL +AGLLEEA  LI       ++ +W
Sbjct: 356 HAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIW 415

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LL  C   RN  +A+  A K+M L+P     Y LL N+   V RW +A KIR  MK  
Sbjct: 416 GALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQ 475

Query: 316 GV-KKMPGKSWIEANSKLNH 334
           GV K+ PG SWIE  S+++ 
Sbjct: 476 GVEKRCPGSSWIEMESQVHQ 495



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 124/240 (51%), Gaps = 38/240 (15%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +L+  + VH  V   G   +V V++SLVD Y   G ++ES RVFD+M +++  + + ++ 
Sbjct: 95  QLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVS 154

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           G  + GD  S  R+F  M + +L ++                                  
Sbjct: 155 GLVRVGDMSSAGRLFDMMPDRNLATW---------------------------------- 180

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L+D YA+   VD A  +F QMP R++I+W +MI+ ++QN R  EAL +F++M + G 
Sbjct: 181 -NTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGI 239

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            PD V+   V+SAC+H+G +D G++ H+  M   + +   I   + ++D+  + G L+ +
Sbjct: 240 SPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIG--SALIDMYAKCGSLDRS 297



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 14/183 (7%)

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           ++ +  +D  + +  +   +    +D+A   + QM + N+  +N+MI GF Q+ +  +AL
Sbjct: 6   VKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQAL 65

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NC 225
            ++  M      P   +F  ++ AC   GL+ + R  FA     +  +   + +      
Sbjct: 66  ELYVQMLRANVSPTSYTFPSLIKAC---GLVSQLR--FAEAVHGHVWRNGFDSHVFVQTS 120

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285
           +VD     G +EE+  + +    R D   W  ++       +   A R    + ++ PD 
Sbjct: 121 LVDFYSSMGRIEESVRVFDEMPER-DVFAWTTMVSGLVRVGDMSSAGR----LFDMMPDR 175

Query: 286 HLS 288
           +L+
Sbjct: 176 NLA 178


>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 212/366 (57%), Gaps = 38/366 (10%)

Query: 5   GKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
              +H      GL  G+V+V ++L+DMY KC  +  + +VF  +  KNSVS + +L G+ 
Sbjct: 113 ASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFM 172

Query: 64  QTGDFESVIRIFREMEEIDLFSF--------------------------GI--------- 88
           + G+ E  I++F EM   D  S+                          G+         
Sbjct: 173 RNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIA 232

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQIFLQMPVR 147
           VL ACA L AL LG  VH +++     KD I I ++L+D+Y++CGC++FA Q+F++M  R
Sbjct: 233 VLAACADLGALTLGLWVH-RFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKR 291

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
            L++WNS+I GFA NG  +E+L  F  M + G KPD VS+ G L+ACSH GL+++G + F
Sbjct: 292 TLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELF 351

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
            +M   ++I P+IEHY C+VDL GRAG LE+A  +IE    + +  +   LL AC T  +
Sbjct: 352 DNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGD 411

Query: 268 AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            ++AER+ K + +L P+    YVLL N+Y A+G+W+ A  +R  MK  GV+K PG S +E
Sbjct: 412 VNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVE 471

Query: 328 ANSKLN 333
            + K++
Sbjct: 472 IDGKVH 477



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 50/293 (17%)

Query: 38  DESHRVFDKMLKKNSVSSSAL----LQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
           +  HR        NSV    L    L  YC+ G        F  M     E +  +F  +
Sbjct: 39  NSPHRNISSKFNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITL 98

Query: 90  LRACAGLAA--LRLGKEVH---CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           L ACA   +        +H   C+Y   +G   V++ +AL+D+Y+KC  +  A ++F  +
Sbjct: 99  LSACADFPSESFFFASSLHGYACKYGLDTG--HVMVGTALIDMYSKCAQLGHARKVFYNL 156

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMT---------------------------- 176
            V+N ++WN+M++GF +NG  E A+++FD+M                             
Sbjct: 157 GVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFH 216

Query: 177 ---EGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGR 232
                G   D+VS I VL+AC+ +G +  G   H   M +E++   KI   N ++D+  R
Sbjct: 217 QMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKIS--NSLIDMYSR 274

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLG-ACTTFRNAHVAERVAKKIMELKPD 284
            G +E A  +      R   S   +++G A   F +  +    A +    KPD
Sbjct: 275 CGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPD 327



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 22/184 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VH  V+      N+ + +SL+DMY +CG ++ + +VF KM K+  VS ++++ G
Sbjct: 243 LTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVG 302

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACA-------GLAALRLGKEVH--CQ 108
           +   G  +  +  F  M+    + D  S+   L AC+       GL      K VH    
Sbjct: 303 FAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITP 362

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEE 167
            I   GC        +VDLY + G ++ A  +  +MP++ N +   S+++    +G    
Sbjct: 363 RIEHYGC--------IVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNL 414

Query: 168 ALRI 171
           A R+
Sbjct: 415 AERL 418


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  256 bits (654), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 131/332 (39%), Positives = 205/332 (61%), Gaps = 5/332 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VHA VI  G   N+ V ++++DMY +C    E+ ++F +M +K++++ + L+ G+  
Sbjct: 229 GKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGFET 288

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              +ES+  IF +M       + F+F  V+ ACA LA L  G+++H   I R    ++ +
Sbjct: 289 LDSYESLC-IFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNNLEL 347

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+YAKCG V  +H+IF  M   NL++W SM+ G+  +G G+EA+ +F++M   G 
Sbjct: 348 SNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGI 407

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD + F+ VLSACSH GL+D G ++F  MT  Y + P  + Y C+VDLL RAG ++EA 
Sbjct: 408 KPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAY 467

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LIEN   + D S+W  LLGAC  ++   + +  A K++E+KP+   +YVLL N   A G
Sbjct: 468 ELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALKVLEMKPNKAGTYVLLSNFSAAEG 527

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            W D   +R LM+ +  KK  G+SWIE  +++
Sbjct: 528 NWADFASLRKLMRSTKSKKEVGRSWIELKNQV 559



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 135/246 (54%), Gaps = 8/246 (3%)

Query: 5   GKEVHAKVITLGLCGN-VVVESSLVDMYGKC-GLVDESHRVFDKMLKKNSVSSSALLQGY 62
           GK VH   I +G  G+ + V+++L+DMY  C   +D +  VF+ +  KN+VS + L+ GY
Sbjct: 126 GKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLVFEDIGTKNAVSWTTLITGY 185

Query: 63  CQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
               D    +R+FR+M     E+  FSF I + ACA + +  LGK+VH   I      ++
Sbjct: 186 THRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGSSNLGKQVHAAVINHGFESNL 245

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +A++D+Y +C C   A Q+F +M  ++ ITWN++I+GF +     E+L IF  M   
Sbjct: 246 PVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGF-ETLDSYESLCIFSQMVSE 304

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  P+  +F  V++AC+++ ++  G++    +     +   +E  N ++D+  + G + +
Sbjct: 305 GFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHR-GLDNNLELSNALIDMYAKCGNVAD 363

Query: 239 AETLIE 244
           +  +  
Sbjct: 364 SHKIFS 369



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 128/272 (47%), Gaps = 13/272 (4%)

Query: 23  VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM---- 78
           + + L+  Y   G  +E+H +FD+M  ++ ++ ++++ GY           +F  M    
Sbjct: 43  LTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDG 102

Query: 79  EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR-RSGCKDVIIESALVDLYAK-CGCVDF 136
            + + F+   VL+AC  L AL  GK VH   I+  +    + +++AL+D+YA  C  +D 
Sbjct: 103 VKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDN 162

Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD--MTEGGTKPDHVSFIGVLSAC 194
           A  +F  +  +N ++W ++I+G+         LR+F    M EG   P   SF   +SAC
Sbjct: 163 ARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSP--FSFSIAVSAC 220

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           + +G  + G++  A++   +  +  +   N ++D+  R     EA+ L      + D+  
Sbjct: 221 ASIGSSNLGKQVHAAVIN-HGFESNLPVMNAILDMYCRCRCASEAKQLFGEMT-QKDTIT 278

Query: 255 WEVLLGACTTFRNAHVAERVAKKIME-LKPDC 285
           W  L+    T  +       ++ + E   P+C
Sbjct: 279 WNTLIAGFETLDSYESLCIFSQMVSEGFSPNC 310


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  256 bits (654), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 130/333 (39%), Positives = 207/333 (62%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK VH   +  G   +V V SSLVDMY KCG + ++  +FD+M ++N VS S ++ GY Q
Sbjct: 145 GKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQ 204

Query: 65  TGDFESVIRIFRE--MEEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             D    + +F++  +E++D+  F+F  V+R C+    L LGK +H   ++ S      +
Sbjct: 205 LDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFV 264

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SAL+ LY+KCG ++ A+Q+F ++P RNL  WNSM+   AQ+   +    +F++M   G 
Sbjct: 265 GSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGM 324

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ +SF+ VL ACSH GL+++GR++F S+ ++Y I+P+ EHY  +VDLLGRAG L+EA 
Sbjct: 325 KPNFISFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDLLGRAGKLQEAV 383

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
           ++I+    R   S+W  LL  C   ++  +A  VA +I+E+       +VLL N Y A G
Sbjct: 384 SVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAG 443

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           R+ +A ++R +++  GVKK  G SW+E  +K++
Sbjct: 444 RYEEAARMRKMLRDRGVKKETGLSWVEEGNKVH 476



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 137/274 (50%), Gaps = 10/274 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG ++HA ++  GL    +V  +L+++Y K  L   S +VFD+  KK+S + S+++  
Sbjct: 41  LRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISA 100

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q       ++ FR M       D   +    +AC  L    +GK VHC  ++     D
Sbjct: 101 FAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCD 160

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S+LVD+YAKCG +  A  +F +MP RN+++W+ MI G+AQ   G EAL +F     
Sbjct: 161 VFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALI 220

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                +  +F  V+  CS    ++ G+  H   +   +     +   + ++ L  + G++
Sbjct: 221 EDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVG--SALISLYSKCGVI 278

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHV 270
           E A  + +    R +  LW  +L AC   ++AH 
Sbjct: 279 EGAYQVFDEIPTR-NLGLWNSMLIACA--QHAHT 309



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 7/182 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H   + +    +  V S+L+ +Y KCG+++ +++VFD++  +N    +++L  
Sbjct: 243 LELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIA 302

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q    + V  +F EM  +    +  SF  VL AC+    +  G+E +   +R  G + 
Sbjct: 303 CAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGRE-YFSLMRDYGIEP 361

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISGFAQNGRGEEALRIFDDM 175
                A LVDL  + G +  A  +  QMP+R   + W ++++G   +   E A  + D +
Sbjct: 362 ETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRI 421

Query: 176 TE 177
            E
Sbjct: 422 LE 423


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  256 bits (654), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 208/368 (56%), Gaps = 36/368 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++ H + +  G   ++ V S+LVDMY KCG + ++  +FD++  +N VS ++++ G
Sbjct: 92  LHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITG 151

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFG---------------------------------- 87
           Y Q  D    +R+F  M E D+ S+                                   
Sbjct: 152 YVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVT 211

Query: 88  --IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              VL ACA   + RLGK +H Q I+     +V + ++++D+Y KCG V+ A + F +M 
Sbjct: 212 LSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR 271

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +N+ +W++M++G+  +G  +EAL +F +M   G KP++++F+ VL+ACSH GL++ G  
Sbjct: 272 EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWH 331

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F +M+ E+ ++P +EHY CMVDLLGRAG L+EA  LI+    R D  +W  LLGAC   
Sbjct: 332 WFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMH 391

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           +N  + E  A+K+ EL P     YVLL N+Y   GRW D  ++R LMK SG+ K PG S 
Sbjct: 392 KNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSL 451

Query: 326 IEANSKLN 333
           ++   +++
Sbjct: 452 VDIKGRVH 459



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 97/179 (54%), Gaps = 9/179 (5%)

Query: 43  VFDKMLKKNSVSS-SALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLA 97
           +F+K + K +V S ++++    ++GD    +R F  M ++ L     +F   +++C+ L 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
            L  G++ H Q +      D+ + SALVD+Y+KCG +  A  +F ++  RN+++W SMI+
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 150

Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216
           G+ QN     ALR+FD M E     D +S+  +++  +  G+     + F  M K+  I
Sbjct: 151 GYVQNDDAHRALRVFDGMAE----RDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEI 205


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  256 bits (654), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 204/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK VH  V  L L  ++ V +SL+ MY KC  VD +  +F+ +  +  VS +A++ G
Sbjct: 365 LERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILG 424

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +  F EM+ +    D F+   V+ A A L+  R  K +H   IR    K+
Sbjct: 425 YAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKN 484

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALVD+Y+KCG +  A ++F  +  R++ITWN+MI G+  +G G  AL +FD M +
Sbjct: 485 IFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKK 544

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  +P+ ++++ V+SACSH GL+D G +HF SM ++Y ++P ++HY  MVDLLGRAG ++
Sbjct: 545 GAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIK 604

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   IEN       +++  +LGAC   +N  V E+ AKK+ EL PD    +VLL N+Y 
Sbjct: 605 EAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYA 664

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +  +W+   ++R  M+  G+KK PG S +E  ++++
Sbjct: 665 STSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVH 700



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 157/291 (53%), Gaps = 12/291 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+GKE+H ++IT     NV   + +V+MY KC  +D+++++FD+M +++ VS + ++ G
Sbjct: 163 LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAG 222

Query: 62  YCQTG----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G      E V+R+  E +  D  +   VL A A +  L +GK +H   IR    K 
Sbjct: 223 FSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL 282

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I +AL D+Y+KCG V+ A  IF  M  + +++WNSM+ G+ QNG  E+A+ +F+ M E
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE 342

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P  V+ +  L AC+ +G ++RG K       +  +   I   N ++ +  +   ++
Sbjct: 343 EGIDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVD 401

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV----AKKIMELKPD 284
            A  +  N + R   S   ++LG     +N  V+E +      K + +KPD
Sbjct: 402 IASDIFNNLNGRTHVSWNAMILGYA---QNGRVSEALNCFSEMKSLGMKPD 449



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 148/284 (52%), Gaps = 8/284 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K+  ++   VI  GL    + ++ LV ++ K G ++E+ RVF+ +  K       +L+G
Sbjct: 62  MKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKG 121

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +    E+ +     M   D+    ++F  +L+ C   A L+ GKE+H Q I  S   +
Sbjct: 122 YAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAAN 181

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   + +V++YAKC  +D A+++F +MP R+L++WN++I+GF+QNG  ++AL +   M +
Sbjct: 182 VFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQD 241

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G +PD ++ + VL A + +GL+  G+  H  ++   +     I     + D+  + G +
Sbjct: 242 EGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNIS--TALADMYSKCGSV 299

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
           E A  + +  D +   S W  ++           A  V +K++E
Sbjct: 300 ETARLIFDGMDQKTVVS-WNSMMDGYVQNGEPEKAIAVFEKMLE 342


>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/336 (37%), Positives = 204/336 (60%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+G E+H + + L L     + + ++ MY +  L+ E+ + F  + +K+ +S + L+  
Sbjct: 218 LKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAA 277

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
                D    +R+F+ M E      D F+F   L ACAGLA++  GK++H   +R    +
Sbjct: 278 CSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQ 337

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+ + +ALV++YAKCGC+ +A+ IF +M   NL++WN++I+GF  +G GE A+ +F+ M 
Sbjct: 338 DLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMN 397

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD V+FIG+L+AC+H GL+D+G+ +F SM + Y I P IEH++C++D+LGRAG L
Sbjct: 398 ASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRL 457

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE  +      +D  +   LL A     +  + ER+AK +++L+P     YVLL N+Y
Sbjct: 458 NEAEEYMRKFPFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLY 517

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            + G W+   + R  +K SG+KK PG S IE N  +
Sbjct: 518 ASDGMWDSVAEARKRLKGSGLKKEPGHSLIEVNGSV 553



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 152/291 (52%), Gaps = 14/291 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  +HA V+  G   +V + + +++MY KCG    + +VFD+M +KN VS SA++ G
Sbjct: 19  LRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSAMISG 78

Query: 62  YCQTGDFESVIRIFREMEEI-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           Y Q G+ +  I ++ +M  + + + F  V+ ACA L+A+ LG+++H + ++        +
Sbjct: 79  YDQAGEPQMAIDLYSQMFLVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFV 138

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L+ +Y KC     A  +F   P  N +++N++I+GF +N + E  L  F  M + G 
Sbjct: 139 SNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGL 198

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            PD  +F+GVL  C+    + RG + H  ++       P I   N ++ +     L++EA
Sbjct: 199 IPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIG--NVIITMYSELNLIQEA 256

Query: 240 ET---LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME---LKPD 284
           E    LIE  D       W  L+ AC+   +     RV K + E   ++PD
Sbjct: 257 EKAFRLIEEKDVIS----WNTLIAACSHCDDHAKGLRVFKHMTEETNVRPD 303



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 3/117 (2%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L  C+   ALR G  +H   ++     DV + + ++++YAKCG   FA Q+F +M  +N
Sbjct: 9   LLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKN 68

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           L++W++MISG+ Q G  + A+ ++  M      P+   F  V+SAC+ +  +  G+K
Sbjct: 69  LVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQK 122


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 205/335 (61%), Gaps = 4/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+H  +  +G   N+VV ++LVDMY KCG + +S +VF+ M  ++ ++ + ++  
Sbjct: 491 LXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS 550

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
              + D    +R+   M       D+ +   +L  C+ LAA R GKE+H    +     D
Sbjct: 551 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD 610

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + L+++Y+KCG +  + Q+F  M  ++++TW ++IS     G G++A+R F +M  
Sbjct: 611 VPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEA 670

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PDHV+F+ ++ ACSH GL++ G  +F  M K+Y+I+P+IEHY C+VDLL R+ LL+
Sbjct: 671 AGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLD 730

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +AE  I +   + DSS+W  LL AC    +  +A+RV+++I+EL PD    YVL+ NVY 
Sbjct: 731 KAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYA 790

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           A+G+W+    IR  +K  G+KK PG SW+E  +K+
Sbjct: 791 ALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKV 825



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 159/289 (55%), Gaps = 10/289 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G  +H  +  +G+  +V+V + L+ MY K   + +  R+FDKM+ +++VS + ++ G
Sbjct: 291 VEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICG 350

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-D 117
           Y Q G +E  I++F EM    + DL +   +L+AC  L  L  GK VH  Y+  SG + D
Sbjct: 351 YSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVH-DYMITSGYECD 409

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               + L+++YAKCG +  + ++F  M  ++ ++WNSMI+ + QNG  +EA+++F  M +
Sbjct: 410 TTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMK 468

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+++ +LS  + +G +  G++    + K       I   N +VD+  + G + 
Sbjct: 469 TDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAK-MGFNSNIVVSNTLVDMYAKCGEMG 527

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           ++  + EN   R D   W  ++ +C    + ++  R+  ++    + PD
Sbjct: 528 DSLKVFENMKAR-DIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPD 575



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 162/305 (53%), Gaps = 11/305 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            +  K +H +V+ +G   ++ + ++L+DMY +   +D++ +VF++M  ++ VS ++L+ G
Sbjct: 190 FEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 249

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G +   + I+     +    D ++   VLRAC GL ++  G  +H    +    KD
Sbjct: 250 YNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKD 309

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           VI+ + L+ +Y K   +    +IF +M +R+ ++WN+MI G++Q G  EE++++F +M  
Sbjct: 310 VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN 369

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              KPD ++   +L AC H+G ++ G+  H   +T  Y         N ++++  + G L
Sbjct: 370 -QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS--NILINMYAKCGNL 426

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI-MELKPDCHLSYVLLDNV 295
             ++ +     C+ DS  W  ++       +   A ++ K +  ++KPD  ++YV+L ++
Sbjct: 427 LASQEVFSGMKCK-DSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPD-SVTYVMLLSM 484

Query: 296 YRAVG 300
              +G
Sbjct: 485 STQLG 489



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 150/296 (50%), Gaps = 8/296 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH  +IT G   +    + L++MY KCG +  S  VF  M  K+SVS ++++  
Sbjct: 391 LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINV 450

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y Q G F+  +++F+ M+   + D  ++ ++L     L  L LGKE+HC   +     ++
Sbjct: 451 YIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNI 510

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ + LVD+YAKCG +  + ++F  M  R++ITWN++I+    +      LR+   M   
Sbjct: 511 VVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTE 570

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  PD  + + +L  CS +    +G++    + K   ++  +   N ++++  + G L  
Sbjct: 571 GVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRN 629

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLL 292
           +  + +    + D   W  L+ AC  +     A R   ++    + PD H+++V +
Sbjct: 630 SFQVFKLMKTK-DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPD-HVAFVAI 683



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 5/205 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SALLQGY 62
           Q  ++H+ +ITLGL  +V+  + L+  Y        S  VF      N+V   +++++  
Sbjct: 90  QLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRAL 149

Query: 63  CQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G F   + ++ E + I    D ++F  V+ ACAGL    + K +H + +      D+
Sbjct: 150 THNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDL 209

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            I +AL+D+Y +   +D A ++F +MP+R++++WNS+ISG+  NG   EAL I+      
Sbjct: 210 YIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNL 269

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRG 203
           G  PD  +   VL AC  +G ++ G
Sbjct: 270 GVVPDSYTMSSVLRACGGLGSVEEG 294


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/330 (40%), Positives = 191/330 (57%), Gaps = 5/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++ H  V+  G   +V V +S+VD YGKC    ++  VFD M  +NSVS  +++  
Sbjct: 236 LSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAA 295

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E     +    R  EE   F     L  CAGL  L LG+ +H   +R     +
Sbjct: 296 YAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDAN 355

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + SALVD+Y KCGCV+ A QIF + P RNL+TWN+MI G+A  G  + AL +FDDM  
Sbjct: 356 IFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIR 415

Query: 178 GG-TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G T P++++ + V+++CS  GL   G + F +M + + I+P+ EHY C+VDLLGRAG+ 
Sbjct: 416 SGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGME 475

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E+A  +I+    R   S+W  LLGAC       +    A+K+ EL P    ++VLL N++
Sbjct: 476 EQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMF 535

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
            + GRW +A  IR  MK  G+KK PG SW+
Sbjct: 536 ASAGRWAEATDIRKEMKNVGIKKDPGCSWV 565



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 139/309 (44%), Gaps = 14/309 (4%)

Query: 1   RLKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           R   G ++H+  I  G L  +  V  + +DMY K G +  +  +F +M  +N V+ +A++
Sbjct: 133 RSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVM 192

Query: 60  QGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
                 G     I  +  + E     ++ S      ACAG   L LG++ H   ++    
Sbjct: 193 TNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFE 252

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + +++VD Y KC C   A  +F  M VRN ++W SM++ +AQNG  EEA   +   
Sbjct: 253 MDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGA 312

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G +P        L+ C+ +  +  GR   A   +   I   I   + +VD+ G+ G 
Sbjct: 313 RRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSC-IDANIFVASALVDMYGKCGC 371

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM---ELKPDCHLSYVLL 292
           +E+AE +      R+  + W  ++G      +A  A  V   ++   E  P+    Y+ L
Sbjct: 372 VEDAEQIFYETPQRNLVT-WNAMIGGYAHIGDAQNALLVFDDMIRSGETAPN----YITL 426

Query: 293 DNVYRAVGR 301
            NV  +  R
Sbjct: 427 VNVITSCSR 435



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 100 RLGKEVHCQYIRR-SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
           RLG+  H + +R  +      I + LV+LY+K      A       P   ++++ + ISG
Sbjct: 32  RLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISG 91

Query: 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            AQ+GR   AL  F  M   G +P+  +F     A +
Sbjct: 92  AAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAA 128


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/330 (40%), Positives = 191/330 (57%), Gaps = 5/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++ H  V+  G   +V V +S+VD YGKC    ++  VFD M  +NSVS  +++  
Sbjct: 129 LSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAA 188

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E     +    R  EE   F     L  CAGL  L LG+ +H   +R     +
Sbjct: 189 YAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDAN 248

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + SALVD+Y KCGCV+ A QIF + P RNL+TWN+MI G+A  G  + AL +FDDM  
Sbjct: 249 IFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIR 308

Query: 178 GG-TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G T P++++ + V+++CS  GL   G + F +M + + I+P+ EHY C+VDLLGRAG+ 
Sbjct: 309 SGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGME 368

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E+A  +I+    R   S+W  LLGAC       +    A+K+ EL P    ++VLL N++
Sbjct: 369 EQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMF 428

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
            + GRW +A  IR  MK  G+KK PG SW+
Sbjct: 429 ASAGRWAEATDIRKEMKNVGIKKDPGCSWV 458



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 139/309 (44%), Gaps = 14/309 (4%)

Query: 1   RLKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           R   G ++H+  I  G L  +  V  + +DMY K G +  +  +F +M  +N V+ +A++
Sbjct: 26  RSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVM 85

Query: 60  QGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
                 G     I  +  + E     ++ S      ACAG   L LG++ H   ++    
Sbjct: 86  TNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFE 145

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + +++VD Y KC C   A  +F  M VRN ++W SM++ +AQNG  EEA   +   
Sbjct: 146 MDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGA 205

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G +P        L+ C+ +  +  GR   A   +   I   I   + +VD+ G+ G 
Sbjct: 206 RRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSC-IDANIFVASALVDMYGKCGC 264

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM---ELKPDCHLSYVLL 292
           +E+AE +      R+  + W  ++G      +A  A  V   ++   E  P+    Y+ L
Sbjct: 265 VEDAEQIFYETPQRNLVT-WNAMIGGYAHIGDAQNALLVFDDMIRSGETAPN----YITL 319

Query: 293 DNVYRAVGR 301
            NV  +  R
Sbjct: 320 VNVITSCSR 328


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 135/309 (43%), Positives = 189/309 (61%), Gaps = 8/309 (2%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----- 79
           ++L+  Y + G V ++  +FD+M  +N+VS SA++ GY Q GD    + +F  M+     
Sbjct: 281 NTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVR 340

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAH 138
             D    G VL ACA L  L  GK VH  Y++ +  +  V + +ALVD+YAKCG +  A 
Sbjct: 341 PDDTVLVG-VLAACAQLGVLEQGKWVH-GYLKANNIRITVFLGTALVDMYAKCGEMQLAM 398

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F  M  +N++ W +MI G A +GRG EAL +F  M   G KPD ++FIG L AC+H G
Sbjct: 399 EVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTG 458

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           L+D+GR+ F SM ++Y IKPKIEHY CMVDLL R GLL EA  ++E    + D+ +W  L
Sbjct: 459 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGAL 518

Query: 259 LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
           +  C   +N  +AE V K  +EL+PD   +YVLL N+Y A GR   A +IR LM+  GV 
Sbjct: 519 MAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVD 578

Query: 319 KMPGKSWIE 327
           K PG S +E
Sbjct: 579 KTPGCSTVE 587



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 72/130 (55%), Gaps = 1/130 (0%)

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           +R +   D    + L+  YA+ G V  A  +F +MP RN ++W++M++G+ Q G G EAL
Sbjct: 269 LRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREAL 328

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            +F  M   G +PD    +GVL+AC+ +G++++G K      K   I+  +     +VD+
Sbjct: 329 GLFARMQADGVRPDDTVLVGVLAACAQLGVLEQG-KWVHGYLKANNIRITVFLGTALVDM 387

Query: 230 LGRAGLLEEA 239
             + G ++ A
Sbjct: 388 YAKCGEMQLA 397



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VH  +    +   V + ++LVDMY KCG +  +  VF  M +KN ++ + +++G
Sbjct: 359 LEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKG 418

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F +ME +    D  +F   L AC     +  G+E+    +R+ G K 
Sbjct: 419 LAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKP 478

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            I     +VDL A+ G ++ A ++  +MP++ + + W ++++G
Sbjct: 479 KIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAG 521


>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/337 (37%), Positives = 204/337 (60%), Gaps = 5/337 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            LK+G E+H + + L L     + + ++ MY +  L+ E+ + F  + +K+ +S + L+ 
Sbjct: 217 NLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIA 276

Query: 61  GYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
                 D    +R+F+ M E      D F+F   L ACAGLA++  GK++H   +R    
Sbjct: 277 ACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLY 336

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +D+ + +ALV++YAKCGC+ +A+ IF +M   NL++WN++I+GF  +G GE A+ +F+ M
Sbjct: 337 QDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQM 396

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G +PD V+FIG+L+AC+H GL+D+G+ +F SM + Y I P IEH++C++D+LGRAG 
Sbjct: 397 NASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGR 456

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L EAE  +      +D  +   LL A     +  + ER+AK +++L+P     YVLL N+
Sbjct: 457 LNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNL 516

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           Y + G W+   + R  +K SG+KK PG S IE N  +
Sbjct: 517 YASDGMWDSVAEARKRLKGSGLKKEPGHSLIEVNGSV 553



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 152/291 (52%), Gaps = 14/291 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  +HA V+  G   +V + + +++MY KCG    + +VFD+M +KN VS SA++ G
Sbjct: 19  LRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSAMISG 78

Query: 62  YCQTGDFESVIRIFREMEEI-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           Y Q G+ +  I ++ +M  + + + F  V+ ACA L+A+ LG+++H + ++        +
Sbjct: 79  YDQAGEPQMAIDLYSQMFLVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFV 138

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L+ +Y KC     A  +F   P  N +++N++I+GF +N + E  L  F  M + G 
Sbjct: 139 SNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGL 198

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            PD  +F+GVL  C+    + RG + H  ++       P I   N ++ +     L++EA
Sbjct: 199 IPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIG--NVIITMYSELNLIQEA 256

Query: 240 ET---LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME---LKPD 284
           E    LIE  D       W  L+ AC+   +     RV K + E   ++PD
Sbjct: 257 EKAFRLIEEKDVIS----WNTLIAACSHCDDHAKGLRVFKHMTEETNVRPD 303



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 3/117 (2%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L  C+   ALR G  +H   ++     DV + + ++++YAKCG   FA Q+F +M  +N
Sbjct: 9   LLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKN 68

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           L++W++MISG+ Q G  + A+ ++  M      P+   F  V+SAC+ +  +  G+K
Sbjct: 69  LVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQK 122


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 130/338 (38%), Positives = 209/338 (61%), Gaps = 12/338 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G++VH+ +   G   N+ + ++L+D+Y KCG V+ +  +F+ +  K+ +S + L+ G
Sbjct: 251 IELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGG 310

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR-S 113
           Y     ++  + +F+EM        E+ + S   +L ACA L A+ +G+ +H    +R  
Sbjct: 311 YTHMNLYKEALLLFQEMLRSGESPNEVTMLS---ILPACAHLGAIDIGRWIHVYIDKRLK 367

Query: 114 GCKDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           G  +   + ++L+D+YAKCG ++ A Q+F  M  R+L +WN+MI GFA +GR   A  IF
Sbjct: 368 GVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIF 427

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
             M + G +PD ++F+G+LSACSH G++D GR  F SMT++Y+I PK+EHY CM+DLLG 
Sbjct: 428 SRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGH 487

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
           +GL +EAE +I + +   D  +W  LL AC    N  + E  A+ +++++P    SYVLL
Sbjct: 488 SGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLL 547

Query: 293 DNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
            N+Y   GRWN+  K R L+   G+KK+PG S IE +S
Sbjct: 548 SNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDS 585



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 150/295 (50%), Gaps = 36/295 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ- 60
            ++G+++H  V+ LG   ++ V +SL+ MY K G  +++ +VFD+   ++ VS +AL++ 
Sbjct: 119 FREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKG 178

Query: 61  ------------------------------GYCQTGDFESVIRIFREMEEI----DLFSF 86
                                         GY +TG+++  + +F+EM +     D  + 
Sbjct: 179 YASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTM 238

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA  A++ LG++VH          ++ I +AL+DLY KCG V+ A  +F  +  
Sbjct: 239 VTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSY 298

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +++I+WN++I G+      +EAL +F +M   G  P+ V+ + +L AC+H+G ID GR  
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWI 358

Query: 207 FASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              + K  + +         ++D+  + G +E A+ + ++   R  SS   ++ G
Sbjct: 359 HVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFG 413



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 143/300 (47%), Gaps = 40/300 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD---ESHRVFDKMLKKNSVSSSAL 58
           L+  + +HAK+I  GL       S L++        D    +  VFD + + N +  + +
Sbjct: 15  LQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTM 74

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIR--- 111
            +G+  + D  S + ++  M  + L    ++F  +L+ACA   A R G+++H   ++   
Sbjct: 75  FRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGC 134

Query: 112 ----------------------------RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
                                       +S  +DV+  +AL+  YA  G +  A ++F +
Sbjct: 135 DLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDE 194

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           +PV+++++WN++ISG+A+ G  +EAL +F +M +   KPD  + + VLSAC+    I+ G
Sbjct: 195 IPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELG 254

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           R+   S   ++     ++  N ++DL  + G +E A  L E    + D   W  L+G  T
Sbjct: 255 RQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYK-DVISWNTLIGGYT 312


>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 212/366 (57%), Gaps = 38/366 (10%)

Query: 5   GKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
              +H      GL  G+V+V ++L+DMY KC  +  + +VF  +  KNSVS + +L G+ 
Sbjct: 113 ASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFM 172

Query: 64  QTGDFESVIRIFREMEEIDLFSF--------------------------GI--------- 88
           + G+ E  I++F EM   D  S+                          G+         
Sbjct: 173 RNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIA 232

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQIFLQMPVR 147
           VL ACA L AL LG  VH +++     KD I I ++L+D+Y++CGC++FA Q+F++M  R
Sbjct: 233 VLAACADLGALTLGLWVH-RFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKR 291

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
            L++WNS+I GFA NG  +E+L  F  M + G KPD VS+ G L+ACSH GL+++G + F
Sbjct: 292 TLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELF 351

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
            +M   ++I P+IEHY C+VDL GRAG LE+A  +IE    + +  +   LL AC T  +
Sbjct: 352 DNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGD 411

Query: 268 AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            ++AER+ K + +L P+    YVLL N+Y A+G+W+ A  +R  MK  GV+K PG S +E
Sbjct: 412 VNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVE 471

Query: 328 ANSKLN 333
            + K++
Sbjct: 472 IDGKVH 477



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 50/293 (17%)

Query: 38  DESHRVFDKMLKKNSVSSSAL----LQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
           +  HR        NSV    L    L  YC+ G        F  M     E +  +F  +
Sbjct: 39  NSPHRNISSKFNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITL 98

Query: 90  LRACAGLAA--LRLGKEVH---CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           L ACA   +        +H   C+Y   +G   V++ +AL+D+Y+KC  +  A ++F  +
Sbjct: 99  LSACADFPSESFFFASSLHGYACKYGLDTG--HVMVGTALIDMYSKCAQLGHARKVFYNL 156

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMT---------------------------- 176
            V+N ++WN+M++GF +NG  E A+++FD+M                             
Sbjct: 157 GVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFH 216

Query: 177 ---EGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGR 232
                G   D+VS I VL+AC+ +G +  G   H   M +E++   KI   N ++D+  R
Sbjct: 217 QMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKIS--NSLIDMYSR 274

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLG-ACTTFRNAHVAERVAKKIMELKPD 284
            G +E A  +      R   S   +++G A   F +  +    A +    KPD
Sbjct: 275 CGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPD 327



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 22/184 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VH  V+      N+ + +SL+DMY +CG ++ + +VF KM K+  VS ++++ G
Sbjct: 243 LTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVG 302

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACA-------GLAALRLGKEVH--CQ 108
           +   G  +  +  F  M+    + D  S+   L AC+       GL      K VH    
Sbjct: 303 FAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITP 362

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEE 167
            I   GC        +VDLY + G ++ A  +  +MP++ N +   S+++    +G    
Sbjct: 363 RIEHYGC--------IVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNL 414

Query: 168 ALRI 171
           A R+
Sbjct: 415 AERL 418


>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
          Length = 591

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/329 (37%), Positives = 204/329 (62%), Gaps = 4/329 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           ++G++VH  V+  G   ++ VES L+D+Y KCGL++++  VF    + + V  + +L G+
Sbjct: 240 REGQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGF 299

Query: 63  CQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G  E    +F EM     EID  +   VL A    A   LGK++H   I+R    + 
Sbjct: 300 AQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVIKRCFGVNT 359

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + LV++Y+KCG +  + ++F +MP +N ++WNS+I+ FA++G G E  ++F+ M   
Sbjct: 360 YVCNGLVNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKAD 419

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KP  V+F+ +L ACSH+G   +G +   SM+ +Y + P++EHY C+VD+LGRAGLL++
Sbjct: 420 GAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDD 479

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A++ IE+     ++ LW+ L+GAC+   N+ V +  A+K++ L P C  +YVLL N+Y +
Sbjct: 480 AKSFIEDGPFTDNALLWQALMGACSFHGNSEVGKYAAEKLLLLDPSCTAAYVLLSNIYSS 539

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            GRW+D  K+   M   G++K  GKSWIE
Sbjct: 540 EGRWDDRAKVMKRMSEMGLRKDTGKSWIE 568



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 131/269 (48%), Gaps = 9/269 (3%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH  V++ G    V V ++LV  Y +CG    + RVF  M +KN ++ +A++ G  +   
Sbjct: 145 VHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAEL 204

Query: 68  FESVIRIFREM---EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           ++    +F +M    + +  ++   L ACA   A R G++VH   ++     D+ +ES L
Sbjct: 205 YKESFSLFGQMIRTVDANNATYSCALLACARSLAAREGQQVHGLVVKAGFEDDLHVESGL 264

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D+Y+KCG ++ A  +F      + +    ++ GFAQNG  E+A  +F +M   G + D 
Sbjct: 265 MDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDE 324

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
            +   VL A         G++  A + K  + +   +   N +V++  + G L E+  + 
Sbjct: 325 NTVSAVLGAFGASAPFALGKQIHALVIKRCFGVNTYV--CNGLVNMYSKCGELRESVRVF 382

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAE 272
           +    ++  S W  ++ A    R+ H +E
Sbjct: 383 DEMPSKNSVS-WNSIIAAFA--RHGHGSE 408



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 25/272 (9%)

Query: 2   LKQGKEVHAKVIT----LGLCGN-------VVVESSLVDMYGKCGLVDESHRVFDKMLKK 50
           L+ G  +HA V+       LC +       +V  +SLV MY +CG  +++ RVFD+M  +
Sbjct: 27  LRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYARCGRREDAARVFDEMRVR 86

Query: 51  NSVSSSALLQGYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACA--GLAALRLGK 103
           ++VS ++L+      GD    + +FR M        D  +F  VL  CA  G A+L    
Sbjct: 87  DAVSWNSLIAASRGAGD---ALALFRRMLRSDARACDRATFTTVLSECARAGAASLPACA 143

Query: 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
            VH   +      +V + +ALV  Y +CG    A ++F  M  +N+ITW +MISG A+  
Sbjct: 144 MVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAE 203

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
             +E+  +F  M       ++ ++   L AC+   L  R  +    +  +   +  +   
Sbjct: 204 LYKESFSLFGQMIR-TVDANNATYSCALLACAR-SLAAREGQQVHGLVVKAGFEDDLHVE 261

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           + ++D+  + GL+E+A T+  +  CR    ++
Sbjct: 262 SGLMDVYSKCGLMEDALTVFRS--CREPDEVF 291


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 131/340 (38%), Positives = 206/340 (60%), Gaps = 6/340 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++HA ++  G   ++ + ++LVDMYGKC  +  +  +FD    ++ +  +A+L  
Sbjct: 314 LQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSA 373

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y Q    +    +F +M    +    +    +L  CA   AL LGK VH  YI +   + 
Sbjct: 374 YAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVH-SYIDKERVEV 432

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D I+ +ALVD+YAKCG ++ A ++F++   R++  WN++I+GFA +G GEEAL IF +M 
Sbjct: 433 DCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEME 492

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+ ++FIG+L ACSH GL+  G+K F  M   + + P+IEHY CMVDLLGRAGLL
Sbjct: 493 RQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLL 552

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA  +I++   + ++ +W  L+ AC   +N  + E  A +++E++P+     VL+ N+Y
Sbjct: 553 DEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIY 612

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            A  RW+DA  +R  MK  G+KK PG S IE N  ++  L
Sbjct: 613 AAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFL 652



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 139/263 (52%), Gaps = 8/263 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GKE+H  V+  GL  +V V ++L+ MYG+C  V+ +  VFDKM++++ VS S +++   +
Sbjct: 113 GKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSR 172

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGL----AALRLGKEVHCQYIRRSGCK--DV 118
             +F+  + + REM  + +    + + +   L    A +R+GK +H   IR S  +   V
Sbjct: 173 NKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGV 232

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
              +AL+D+YAKCG +  A Q+F  +  + +++W +MI+G  ++ R EE  ++F  M E 
Sbjct: 233 PTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEE 292

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
              P+ ++ + ++  C   G +  G++  A + +       +     +VD+ G+   +  
Sbjct: 293 NIFPNEITMLSLIVECGFTGALQLGKQLHAYILRN-GFSVSLALATALVDMYGKCSDIRN 351

Query: 239 AETLIENADCRHDSSLWEVLLGA 261
           A  L ++   R D  +W  +L A
Sbjct: 352 ARALFDSTQNR-DVMIWTAMLSA 373



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 137/264 (51%), Gaps = 8/264 (3%)

Query: 2   LKQGKEVHAKVI--TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           ++ GK +HA VI  +      V   ++L+DMY KCG +  + ++F+ + +K  VS +A++
Sbjct: 211 MRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMI 270

Query: 60  QGYCQTGDFESVIRIFREMEEIDLFSFGIVLRA----CAGLAALRLGKEVHCQYIRRSGC 115
            G  ++   E   ++F  M+E ++F   I + +    C    AL+LGK++H   +R    
Sbjct: 271 AGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFS 330

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             + + +ALVD+Y KC  +  A  +F     R+++ W +M+S +AQ    ++A  +FD M
Sbjct: 331 VSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM 390

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G +P  V+ + +LS C+  G +D G+   + + KE R++        +VD+  + G 
Sbjct: 391 RTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKE-RVEVDCILNTALVDMYAKCGD 449

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           +  A  L   A  R D  +W  ++
Sbjct: 450 INAAGRLFIEAISR-DICMWNAII 472



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 89/175 (50%), Gaps = 2/175 (1%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           VL+AC  ++  +LGKE+H   +++   +DV + +AL+ +Y +C CV++A  +F +M  R+
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERD 159

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +++W++MI   ++N   + AL +  +M     +P  V+ + +++  +    +  G+   A
Sbjct: 160 VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHA 219

Query: 209 SMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
            + +    +   +     ++D+  + G L  A  L  N   +     W  ++  C
Sbjct: 220 YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLF-NGLTQKTVVSWTAMIAGC 273


>gi|414879360|tpg|DAA56491.1| TPA: hypothetical protein ZEAMMB73_164599 [Zea mays]
          Length = 520

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 130/313 (41%), Positives = 185/313 (59%), Gaps = 6/313 (1%)

Query: 23  VESSLVDMYGKCG--LVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME- 79
           V ++LVD Y +        +  VFD+M +++ V+ ++LL G  + G   + +R +  M  
Sbjct: 82  VANALVDAYARLPHAGAAAARAVFDEMPRRDVVTWTSLLTGLARAGAHGAAVRAYHGMVA 141

Query: 80  ---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF 136
              + D F+    L +CA   AL LG+ VH   +R        +E++LV +YAK G +  
Sbjct: 142 SGVQPDEFAVPAALSSCAASTALDLGRSVHAAAVRLGLRPFRSVENSLVSMYAKTGALRD 201

Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
           A  +F  MP R  ITW ++I G+AQNGRG ++L ++ DM   G +PD+V+FIG+L ACSH
Sbjct: 202 ARAVFDAMPARCTITWTALIVGYAQNGRGRQSLEVYADMVRSGCRPDYVTFIGLLFACSH 261

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            GL+D GR HF SM   Y I P  +HY CMVDLLGRAG L+EA  L+  +    D+++W+
Sbjct: 262 AGLVDAGRAHFRSMVPVYGIAPGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWK 321

Query: 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
            LLGAC   +NA +AER A+ +  L P   + YV+L N+Y    RW D  +IR LMK  G
Sbjct: 322 SLLGACRVHQNAELAERAAEMVWRLDPADAVPYVMLSNLYSRARRWGDVARIRALMKARG 381

Query: 317 VKKMPGKSWIEAN 329
           V K PG SW+  N
Sbjct: 382 VTKEPGCSWVGVN 394



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 41/199 (20%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VHA  + LGL     VE+SLV MY K G + ++  VFD M  + +++ +AL+ G
Sbjct: 164 LDLGRSVHAAAVRLGLRPFRSVENSLVSMYAKTGALRDARAVFDAMPARCTITWTALIVG 223

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVII 120
           Y Q G     + ++ +M                                 RSGC+ D + 
Sbjct: 224 YAQNGRGRQSLEVYADMV--------------------------------RSGCRPDYVT 251

Query: 121 ESALVDLYAKCGCVDFAHQIFLQM-PVRNLIT----WNSMISGFAQNGRGEEALRIFDDM 175
              L+   +  G VD     F  M PV  +      +  M+    + GR +EA+   D +
Sbjct: 252 FIGLLFACSHAGLVDAGRAHFRSMVPVYGIAPGPDHYACMVDLLGRAGRLDEAM---DLL 308

Query: 176 TEGGTKPDHVSFIGVLSAC 194
               T+ D   +  +L AC
Sbjct: 309 NRSSTELDATVWKSLLGAC 327


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 216/361 (59%), Gaps = 35/361 (9%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH  V   G   N VVE+SLV+MY KC  +D++H+VF++M ++++VS + L+ G+ +
Sbjct: 136 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVR 195

Query: 65  TGDFESVIRIFREMEEIDLFSF--------------------------GI---------V 89
            G       IF EM++  +FS+                          GI         V
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L ACA L AL LGK +H    +    +++ + +AL+++YAKCG +D   ++F QM  R++
Sbjct: 256 LPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDV 315

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           I+W++MI G A +GR  EA+ +F +M +   +P+ ++F+G+LSAC+H GL++ G ++F S
Sbjct: 316 ISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFES 375

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           M ++Y I+P +EHY C+V+LLG +G L++A  LI+    + DS++W  LL +C +  N  
Sbjct: 376 MKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLE 435

Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           +A    + ++EL+P    +YVLL N+Y  +G+W+   ++R LM+   +KK PG S IE +
Sbjct: 436 IAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVD 495

Query: 330 S 330
           +
Sbjct: 496 N 496



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 164/350 (46%), Gaps = 45/350 (12%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++HA ++   L  +  + + +VD+       + ++ +F ++   N+   +A+++ Y   
Sbjct: 31  KKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHN 90

Query: 66  GDFESVIRIFREM-------EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
             +   I ++++M         I  D F+F  V+++CAGL    LGK+VH    +     
Sbjct: 91  KVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + ++E++LV++Y KC  +D AH++F +M  R+ ++WN++ISG  + G+   A  IF++M 
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ 210

Query: 177 EG-------------------------------GTKPDHVSFIGVLSACSHMGLIDRGR- 204
           +                                G +PD +S + VL AC+ +G ++ G+ 
Sbjct: 211 DKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKW 270

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
            HF +    +     I   N ++++  + G ++E   L +  + R D   W  ++     
Sbjct: 271 IHFYADKAGFL--RNICVCNALIEMYAKCGSIDEGRRLFDQMNER-DVISWSTMIVGLAN 327

Query: 265 FRNAHVAERVAKKIMELKPDCH-LSYVLLDNVYRAVGRWNDAFKIRTLMK 313
              AH A  + +++ + K + + +++V L +     G  N+  +    MK
Sbjct: 328 HGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMK 377



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 16/187 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H      G   N+ V ++L++MY KCG +DE  R+FD+M +++ +S S ++ G
Sbjct: 265 LELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVG 324

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     I +F+EM+    E ++ +F  +L ACA    L  G     +Y   S  +D
Sbjct: 325 LANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEG----LRYF-ESMKRD 379

Query: 118 VIIESA------LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALR 170
             IE        LV+L    G +D A ++  +MP++ +   W S++S    +   E A+ 
Sbjct: 380 YNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVI 439

Query: 171 IFDDMTE 177
             + + E
Sbjct: 440 AMEHLLE 446


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/330 (41%), Positives = 203/330 (61%), Gaps = 6/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GKE+HA+ I +G   ++ V ++L DMY K G +  +  VFD  L+ + VS + L+ G
Sbjct: 260 VRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSLR-DEVSYNILIVG 318

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + QT D    + +F EM+ + L     SF   L ACA L A++ GKE+H   +R+     
Sbjct: 319 HSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIH 378

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++L+D Y KCG +  A  IF +M  +++ +WN+MI G+   G  + A+ +F++M +
Sbjct: 379 LFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRK 438

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              + D VSFI VLSACSH GL+++GRK+F  + K   I+P   HY CMVDLLGRAGL+E
Sbjct: 439 DDVEYDSVSFIAVLSACSHGGLLEKGRKYFDEL-KARGIEPTQMHYACMVDLLGRAGLME 497

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI+      D+++W  LLGAC  + N  +A   A+ + ELKP+    Y LL N+Y 
Sbjct: 498 EAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPEHSGYYTLLSNMYA 557

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             GRW++A +IR LMK  GVKK PG SW++
Sbjct: 558 ETGRWDEANRIRELMKSRGVKKSPGCSWVQ 587



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 21/237 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+EVH  V+ LG   +V V ++L+  YG CG + ++ RVFD+M +K+ VS + ++  
Sbjct: 57  VRKGREVHGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGV 116

Query: 62  YCQTG-DFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +   G  +   + +FR M         I + SF  VL     L   + G+EVH   IR  
Sbjct: 117 FSVNGWHYRDALDMFRLMIDEGLKPNSITISSFLPVL---VELEFFKAGREVHGSSIRMG 173

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D+ I ++L+D+YAK G    A  +F ++  +N+++WN+MI+ FAQN     A+ +  
Sbjct: 174 LESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVR 233

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
            M + G  P+ V+F  VL AC+ MGL+  G++          I  +  H  C  DL 
Sbjct: 234 QMQDYGELPNSVTFTNVLPACARMGLVRPGKE----------IHARSIHMGCAFDLF 280



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 8/230 (3%)

Query: 56  SALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           + L++GY   G     + ++ +M  I    D  +F  VL+ACA    +R G+EVH   ++
Sbjct: 11  NTLIRGYSIAG-VGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVVK 69

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG-RGEEALR 170
                DV + + L+  Y  CG +  A ++F +MP ++L++WN+MI  F+ NG    +AL 
Sbjct: 70  LGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALD 129

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F  M + G KP+ ++    L     +     GR+   S  +   ++  I   N ++D+ 
Sbjct: 130 MFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIR-MGLESDIFIANSLIDMY 188

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
            ++G   EA  +    D ++  S W  ++      R   VA  + +++ +
Sbjct: 189 AKSGHSTEASNVFYKLDAKNVVS-WNAMIANFAQNRFELVAVGLVRQMQD 237


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 206/345 (59%), Gaps = 17/345 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMY------GKCGLVDESHRVFDKMLKKNSVS 54
           RL+ G  VHA ++  G   +  V ++LV MY      G  G V  + +VFD+   K+SV+
Sbjct: 242 RLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVT 300

Query: 55  SSALLQGYCQTGDFESVIRIFREME-------EIDLFSFGIVLRACAGLAALRLGKEVHC 107
            SA++ GY + G+    + +FREM+       EI + S   VL ACA L AL LGK +  
Sbjct: 301 WSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVS---VLSACADLGALELGKWLES 357

Query: 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
              R++  + V + +AL+D++AKCG VD A ++F +M VR +++W SMI G A +GRG E
Sbjct: 358 YIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLE 417

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
           A+ +FD+M E G  PD V+FIGVLSACSH GL+D+G  +F +M   + I PKIEHY CMV
Sbjct: 418 AVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMV 477

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287
           D+L RAG + EA   +       +  +W  ++ AC       + E VAK+++  +P    
Sbjct: 478 DMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHES 537

Query: 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +YVLL N+Y  + RW    K+R +M   G++K+PG + IE N+++
Sbjct: 538 NYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEI 582



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 129/271 (47%), Gaps = 19/271 (7%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVF---DKMLKKNSVSS---SALLQ 60
           ++H+ ++ LGL  N +V +           V  +  V    D+     S  +   + L++
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 61  GYCQTGDFES-VIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            + QT   +   +R +  M       + F+F  VL+ACAG+  L LG  VH   ++    
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFE 259

Query: 116 KDVIIESALVDLYAKCGCVD------FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           +D  + + LV +Y  C C D       A ++F + PV++ +TW++MI G+A+ G    A+
Sbjct: 260 EDPHVRNTLVHMYC-CCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAV 318

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            +F +M   G  PD ++ + VLSAC+ +G ++ G K   S  +   I   +E  N ++D+
Sbjct: 319 TLFREMQVTGVCPDEITMVSVLSACADLGALELG-KWLESYIERKNIMRSVELCNALIDM 377

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             + G ++ A  +      R   S   +++G
Sbjct: 378 FAKCGDVDRAVKVFREMKVRTIVSWTSMIVG 408


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 132/330 (40%), Positives = 191/330 (57%), Gaps = 5/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++ H  V+T G   +V V +++VD YGKC    ++  VFD M  +NSVS  +++  
Sbjct: 231 LSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVA 290

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + ++       EE   F    VL  CAGL  L  G+ +H   +R     +
Sbjct: 291 YAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDAN 350

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT- 176
           + + SALVD+Y KCG V+ A Q+FL MP RNL+TWN+MI G+A  G  + AL +FD M  
Sbjct: 351 IFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIR 410

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            GGT P+H++ + V++ACS  GL   G + F +M + + ++P+ EHY C+VDLLGRAG+ 
Sbjct: 411 SGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGME 470

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E A  +I+    R   S+W  LLGAC       +    ++K+ EL P    ++VLL N+ 
Sbjct: 471 ERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNML 530

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
            + GRW +A  +R  MK  G+KK PG SWI
Sbjct: 531 ASAGRWAEATDVRKEMKNVGIKKEPGCSWI 560



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 128/261 (49%), Gaps = 7/261 (2%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G ++HA  +  G L G+  V  + +DMY K G +  + R+F++M  +N ++ +A++    
Sbjct: 132 GPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAV 191

Query: 64  QTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             G      + +  + E     ++ S      ACAG   L LG++ H   +      DV 
Sbjct: 192 IDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVS 251

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +A+VD Y KC C   A  +F  M VRN ++W SMI  +AQ+G  E+AL ++      G
Sbjct: 252 VSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTG 311

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +P       VL+ C+ +  ++ GR   A   +   I   I   + +VD+ G+ G +E+A
Sbjct: 312 EEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSC-IDANIFVASALVDMYGKCGGVEDA 370

Query: 240 ETLIENADCRHDSSLWEVLLG 260
           E +  +   R+  + W  ++G
Sbjct: 371 EQVFLDMPERNLVT-WNAMIG 390



 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 69/184 (37%), Gaps = 15/184 (8%)

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR-SGCKDVIIESALVDLYAKCGCV 134
           R     D    G    A     + RLG+  H + +R  S      I + LV+LY+K    
Sbjct: 2   RPAAAADPQLLGAAFEAAISSRSPRLGRAAHARALRLLSPGLPPFICAHLVNLYSKLDLP 61

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA- 193
             A       P   ++++ + ISG AQ+ R   AL  F  M   G +P+  +F     A 
Sbjct: 62  AAAASALASDPNPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAA 121

Query: 194 ------CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC-MVDLLGRAGLLEEAETLIENA 246
                 CS +G          ++   +   P     +C  +D+  + G L  A  L E  
Sbjct: 122 ACAPPRCSTVG------PQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEM 175

Query: 247 DCRH 250
             R+
Sbjct: 176 PNRN 179


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 209/362 (57%), Gaps = 41/362 (11%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD--------------------------- 38
           ++VH   I +GL  N+++ ++L+D YGKCG  D                           
Sbjct: 168 RQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQA 227

Query: 39  ----ESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVL 90
               ++H +F +M +KN+VS +AL+ G+ Q G  +  + +F +M E  +    F+F  VL
Sbjct: 228 SRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVL 287

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKD----VIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            ACA LA +  GKE+H  +I RS C D    + I +AL+D+Y KCG +  A  +F  M  
Sbjct: 288 SACADLALIARGKEIH-GHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHE 346

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +++++WNS+I+GFAQNG GEE+L +F+ M E   +P+HV+F+G+LSAC H GL+  G + 
Sbjct: 347 KDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRI 406

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS-SLWEVLLGACTTF 265
             SM K+Y + P+ +HY  M+DLLGR   LEEA  LI+ A    D   +W  LLGAC   
Sbjct: 407 LDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIH 466

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  +A R A+ + +L+P     YV++ N+Y A  RW++A ++R LM   G++K    SW
Sbjct: 467 GNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASRWDEARQVRRLMMERGLRKEAACSW 526

Query: 326 IE 327
           IE
Sbjct: 527 IE 528



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 167/366 (45%), Gaps = 80/366 (21%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--------------------------- 34
           LK GK +H+  I   L     + + L+D Y KC                           
Sbjct: 30  LKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLPVKNTHSWNIIISA 89

Query: 35  ----GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE------IDLF 84
               GL +E+H + D+M K N VS ++L+ G    G  +  + +F+ M +       D F
Sbjct: 90  YSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEF 149

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +   ++ +CA L A  L ++VH   I      ++II +AL+D Y KCG  D +  IF +M
Sbjct: 150 TLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRM 209

Query: 145 PVRNLITWNSM-------------------------------ISGFAQNGRGEEALRIFD 173
           P R++++W SM                               I+GFAQNGRG+EAL +F+
Sbjct: 210 PERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFE 269

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP--KIEHYNCMVDLLG 231
            M E G  P   +F  VLSAC+ + LI RG++    + +   I     I   N ++D+  
Sbjct: 270 QMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYC 329

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACTTF-RNAHVAERVA--KKIME--LKPDCH 286
           + G +  A TL +      D   W  L+   T F +N H  E +A  ++++E  ++P+ H
Sbjct: 330 KCGQMRSATTLFKGMH-EKDIVSWNSLI---TGFAQNGHGEESLAVFERMIEADIRPN-H 384

Query: 287 LSYVLL 292
           ++++ L
Sbjct: 385 VTFLGL 390



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 4/128 (3%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  ++  C     L+LGK +H  +I+ +      + + L+D Y+KC  +  AH++F  +P
Sbjct: 17  YSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLP 76

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           V+N  +WN +IS ++++G   EA  + D M     KP+ VS+  ++S   H G       
Sbjct: 77  VKNTHSWNIIISAYSRSGLFNEAHNLLDQM----PKPNLVSYNSLISGLGHHGFRKESLN 132

Query: 206 HFASMTKE 213
            F +M K+
Sbjct: 133 VFKTMLKQ 140


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/338 (39%), Positives = 205/338 (60%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +GKE+H   I  G   +V + SSL+DMY KC  V+ S   F  +  ++++S ++++ G
Sbjct: 215 VTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAG 274

Query: 62  YCQTGDFESVIRIFREM--EEIDLF--SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G F+  +  FR M  E++     SF  V+ ACA L AL LGK++H   IR     +
Sbjct: 275 CVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDN 334

Query: 118 VIIESALVDLYAKCGCVDFAHQIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             I S+L+D+YAKCG +  A  IF  ++M  R++++W ++I G A +G   +A+ +F++M
Sbjct: 335 KFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEM 394

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G KP +V+F+ VL+ACSH GL+D G K+F SM +++ + P +EHY  + DLLGRAG 
Sbjct: 395 LVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGR 454

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           LEEA   I N       S+W  LL AC   +N  +AE+V  KI+ + P    ++V++ N+
Sbjct: 455 LEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNI 514

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           Y A  RW DA K+R  M+ +G+KK P  SWIE  +K++
Sbjct: 515 YSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVH 552



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 28/286 (9%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGL----------------------VDESHR 42
            + +HA VI LG   ++   ++L++MY K                         +D   +
Sbjct: 95  AQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRK 154

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAA 98
           +FD+M  ++ VS + ++ G  Q G +E  + + +EM + +L    F+   +L      A 
Sbjct: 155 LFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHAN 214

Query: 99  LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
           +  GKE+H   IR    KDV I S+L+D+YAKC  V+ +   F  +  R+ I+WNS+I+G
Sbjct: 215 VTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAG 274

Query: 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP 218
             QNGR ++ L  F  M +   KP  VSF  V+ AC+H+  ++ G++  A + +      
Sbjct: 275 CVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDN 334

Query: 219 KIEHYNCMVDLLGRAGLLEEAETLIENAD-CRHDSSLWEVLLGACT 263
           K    + ++D+  + G ++ A  +    + C  D   W  ++  C 
Sbjct: 335 KFI-ASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCA 379


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/337 (37%), Positives = 209/337 (62%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +GKE+H   +  G  G+V + SSL+DMY KC  ++ S R F  + +K+++S ++++ G
Sbjct: 243 VNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAG 302

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G+F+  +  FR M + ++     SF  V+ ACA L AL LG+++H   +R     +
Sbjct: 303 CVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDN 362

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I S+LVD+YAKCG +  A  +F ++  R+++ W ++I G A +G   +A+ +F++M E
Sbjct: 363 EFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLE 422

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P +V+F+ VL+ACSH GL+D G ++F SM +++ I P +EHY  + DLLGRAG LE
Sbjct: 423 DGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLE 482

Query: 238 EAETLIENA-DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EA   I N    +   S+W +LL AC   ++  +AE+V  K++ +  +   +YVL+ N+Y
Sbjct: 483 EAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIY 542

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A  RW DA ++R  M+  G+KK P  SWIE  ++++
Sbjct: 543 SAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVH 579



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 167/357 (46%), Gaps = 40/357 (11%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKC---------------GLVDESHRVFDKM 47
           K    +HA  + LGL  ++ + ++L++ Y K                  +D   +VFD M
Sbjct: 127 KLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMM 186

Query: 48  LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLG 102
             ++ VS + ++ G+ Q G +   + + REM +      D F+   +L   A    +  G
Sbjct: 187 PVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKG 246

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           KE+H   +R     DV I S+L+D+YAKC  ++ + + F  +P ++ I+WNS+I+G  QN
Sbjct: 247 KEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQN 306

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
           G  +  L  F  M +   KP  VSF  V+ AC+H+  +  GR+    +    R+      
Sbjct: 307 GEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIV---RLGFDDNE 363

Query: 223 Y--NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
           +  + +VD+  + G ++ A  + +  D R D   W  ++  C    +A  A  + + ++E
Sbjct: 364 FIASSLVDMYAKCGNIKMARYVFDRIDKR-DMVAWTAIIMGCAMHGHALDAVSLFENMLE 422

Query: 281 --LKPDCHLSYV----------LLDNVYRAVGRWNDAFKIRT-LMKYSGVKKMPGKS 324
             ++P C+++++          L+D  +R        F I   L  Y+ V  + G++
Sbjct: 423 DGVRP-CYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRA 478



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 16/136 (11%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC-------------- 131
           F  +L+A   L   +L   +H   +R     D+ I +AL++ YAK               
Sbjct: 113 FPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRG 172

Query: 132 -GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT-KPDHVSFIG 189
              +D   ++F  MPVR++++WN++I+GFAQNG   EAL +  +M + G  KPD  +   
Sbjct: 173 ESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSS 232

Query: 190 VLSACSHMGLIDRGRK 205
           +L   +    +++G++
Sbjct: 233 ILPIFAEHVDVNKGKE 248


>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
 gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
          Length = 568

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 197/333 (59%), Gaps = 7/333 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KKNSVSSSALL 59
           L+ G+ +HA+    GL   V V++SLV +YG CGL + +HRVFD++   ++N VS +++L
Sbjct: 134 LRHGERIHAEAAKNGLATLVFVKNSLVHLYGACGLFESAHRVFDEIPVGERNLVSWNSML 193

Query: 60  QGYCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGC 115
            G+   G    V+ IFREM +++    G     VL A A + AL LG+ VH    +    
Sbjct: 194 NGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGRRVHVYLTKVGLV 253

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDD 174
           ++  + +AL+DLYAKCG V+ A ++F +M  R  +++W S+I G A NG G+EAL +F  
Sbjct: 254 ENSHVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNGFGKEALELFGI 313

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M      P  ++ +GVL ACSH GL+D G  +F  M +EY I P+IEH  CMVDLLGRAG
Sbjct: 314 MEREKLVPTEITMVGVLYACSHCGLVDDGFMYFNRMKEEYNIAPRIEHLGCMVDLLGRAG 373

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            ++EA   I       ++ +W  LLGAC   +   + E    +++EL P     YVLL N
Sbjct: 374 KVKEAYDYILTMPLEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSN 433

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           +Y AVGRW D   +R  M   GV+K PG+S +E
Sbjct: 434 LYAAVGRWADVHVLRKTMVKDGVRKNPGRSLVE 466



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 103/186 (55%), Gaps = 3/186 (1%)

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           R +   D  ++  +L+ACA L +LR G+ +H +  +      V ++++LV LY  CG  +
Sbjct: 111 RRLAPPDTHTYPPLLQACARLLSLRHGERIHAEAAKNGLATLVFVKNSLVHLYGACGLFE 170

Query: 136 FAHQIFLQMPV--RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
            AH++F ++PV  RNL++WNSM++GFA NGR  E L IF +M +    PD  + + VL+A
Sbjct: 171 SAHRVFDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTA 230

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
            + +G +  GR+    +TK   ++      N ++DL  + G +E+A  + E    R    
Sbjct: 231 SAEIGALALGRRVHVYLTKVGLVE-NSHVGNALIDLYAKCGGVEDARRVFEEMGARRTVV 289

Query: 254 LWEVLL 259
            W  L+
Sbjct: 290 SWTSLI 295


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 209/335 (62%), Gaps = 6/335 (1%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L+ G+ +H  V   GL  +  V ++LVDMYGKC  ++++  +FDKM +++ V+ + ++ G
Sbjct: 852  LQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGG 911

Query: 62   YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
            Y + G+    + +F +M E     D  +   V+ ACA L A+   + +   YI+R   + 
Sbjct: 912  YAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTID-DYIQRKKFQL 970

Query: 117  DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            DVI+ +A++D++AKCGCV+ A +IF +M  +N+I+W++MI+ +  +G+G +AL +F  M 
Sbjct: 971  DVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 1030

Query: 177  EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              G  P+ ++ + +L ACSH GL++ G + F+ M ++Y ++  ++HY C+VDLLGRAG L
Sbjct: 1031 RSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRL 1090

Query: 237  EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            +EA  LI +     D  LW   LGAC T ++  +AE+ A  ++EL+P     Y+LL N+Y
Sbjct: 1091 DEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIY 1150

Query: 297  RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
               GRW D  KIR LM    +KK+PG +WIE ++K
Sbjct: 1151 ANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNK 1185



 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 206/335 (61%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +H  V   GL  +  V ++LVDMY KC  ++++  +FDKM +++ V+ + ++ G
Sbjct: 176 LQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGG 235

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + G     + +F +M E     D  +   V+ ACA L A+   + +   YI+R   + 
Sbjct: 236 YAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIID-DYIQRKKFQL 294

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DVI+ +A++D+YAKCGCV+ A +IF +M  +N+I+W++MI+ +  +G+G +AL +F  M 
Sbjct: 295 DVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 354

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  PD ++   +L ACSH GL++ G + F+SM ++Y ++  ++HY C+VDLLGRAG L
Sbjct: 355 SSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRL 414

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA  LI++     D  LW   LGAC T ++  +AE+ A  ++EL+      YVLL N+Y
Sbjct: 415 DEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIY 474

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
              GRW D  KIR LM    +KK PG +WIE ++K
Sbjct: 475 ANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNK 509



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 142/264 (53%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L Q ++VHA+    G+  N+VV + L+  Y     +D+++ +FD M  ++SVS S ++ G
Sbjct: 75  LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 134

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + + GD+ +    FRE+       D ++   V+RAC  L  L++G+ +H    +     D
Sbjct: 135 FAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLD 194

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +ALVD+Y KC  ++ A  +F +M  R+L+TW  MI G+A+ G+  E+L +F+ M E
Sbjct: 195 HFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 254

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V+ + V+ AC+ +G + + R       +  + +  +     M+D+  + G +E
Sbjct: 255 EGVVPDKVAMVTVVFACAKLGAMHKARI-IDDYIQRKKFQLDVILGTAMIDMYAKCGCVE 313

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A  + +  + ++  S W  ++ A
Sbjct: 314 SAREIFDRMEEKNVIS-WSAMIAA 336



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 140/264 (53%), Gaps = 6/264 (2%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L Q ++VH +    G+  N++V + LV  Y     +D+++ +FD M  ++SVS S ++ G
Sbjct: 751  LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 62   YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            + + GD+ +    FRE+       D ++   V+RAC  L  L++G+ +H    +     D
Sbjct: 811  FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLD 870

Query: 118  VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
              + +ALVD+Y KC  ++ A  +F +M  R+L+TW  MI G+A+ G   E+L +FD M E
Sbjct: 871  HFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMRE 930

Query: 178  GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             G  PD V+ + V+ AC+ +G + + R       +  + +  +     M+D+  + G +E
Sbjct: 931  EGVVPDKVAMVTVVFACAKLGAMHKART-IDDYIQRKKFQLDVILGTAMIDMHAKCGCVE 989

Query: 238  EAETLIENADCRHDSSLWEVLLGA 261
             A  + +  + ++  S W  ++ A
Sbjct: 990  SAREIFDRMEEKNVIS-WSAMIAA 1012



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 16/224 (7%)

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           ++VH Q       +++I+ + LV  Y+    +D A+ +F  M VR+ ++W+ M+ GFA+ 
Sbjct: 755 RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 814

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR--KHFASMTKEYRIKPKI 220
           G        F ++   G +PD+ +   V+ AC  +  +  GR   H       Y+    +
Sbjct: 815 GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIV-----YKFGLDL 869

Query: 221 EHYNC--MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           +H+ C  +VD+ G+   +E+A  L +    R D   W V++G      NA+ +  +  K+
Sbjct: 870 DHFVCAALVDMYGKCREIEDARFLFDKMXER-DLVTWTVMIGGYAECGNANESLVLFDKM 928

Query: 279 ME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
            E  + PD     V +  V  A  +     K RT+  Y   KK 
Sbjct: 929 REEGVVPD----KVAMVTVVFACAKLGAMHKARTIDDYIQRKKF 968


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/330 (38%), Positives = 199/330 (60%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK +H+  I  G+C ++ V ++L+DMY KCG V +S ++F  M   ++V+ + ++  
Sbjct: 424 LKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISA 483

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + GDF + +++  +M +     D+ +F + L  CA LAA RLGKE+HC  +R     +
Sbjct: 484 CVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESE 543

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I +AL+++Y+KCGC++ + ++F +M  R+++TW  MI  +   G GE+AL  F DM +
Sbjct: 544 LQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEK 603

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V FI ++ ACSH GL+D G   F  M   Y+I P IEHY C+VDLL R+  + 
Sbjct: 604 SGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKIS 663

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +AE  I+    + D+S+W  +L AC T  +   AERV+++I+EL PD     +L  N Y 
Sbjct: 664 KAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYA 723

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           A+ +W+    IR  +K   + K PG SWIE
Sbjct: 724 ALRKWDKVSLIRKSLKDKHITKNPGYSWIE 753



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 136/264 (51%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K ++  ++  G      V + L+D+Y KCG +  +  VF+ M  K++VS ++++ G
Sbjct: 323 LSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISG 382

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q+GD    +++F+ M    E+ D  ++ +++     LA L+ GK +H   I+   C D
Sbjct: 383 YIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICID 442

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+D+YAKCG V  + +IF  M   + +TWN++IS   + G     L++   M +
Sbjct: 443 LSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRK 502

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               PD  +F+  L  C+ +     G++    + + +  + +++  N ++++  + G LE
Sbjct: 503 SEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR-FGYESELQIGNALIEMYSKCGCLE 561

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            +  + E    R D   W  ++ A
Sbjct: 562 NSSRVFERMS-RRDVVTWTGMIYA 584



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 115/208 (55%), Gaps = 5/208 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSALLQ 60
           L + + +HA VI+LGL  +      L+D Y        S  VF ++   KN    +++++
Sbjct: 20  LNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIR 79

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            + + G F   +  + ++ E     D ++F  V++ACAGL    +G  V+ Q +      
Sbjct: 80  AFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFES 139

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+ + +ALVD+Y++ G +  A Q+F +MPVR+L++WNS+ISG++ +G  EEAL I+ ++ 
Sbjct: 140 DLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELK 199

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGR 204
                PD  +   VL A  ++ ++ +G+
Sbjct: 200 NSWIVPDSFTVSSVLPAFGNLLVVKQGQ 227



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 149/288 (51%), Gaps = 7/288 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +KQG+ +H   +  G+   VVV + LV MY K     ++ RVFD+M  ++SVS + ++ G
Sbjct: 223 VKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICG 282

Query: 62  YCQTGDFESVIRIFRE---MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y +    E  +R+F E     + DL +   VLRAC  L  L L K ++   ++     + 
Sbjct: 283 YLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLES 342

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + L+D+YAKCG +  A  +F  M  ++ ++WNS+ISG+ Q+G   EA+++F  M   
Sbjct: 343 TVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIM 402

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             + DH++++ ++S  + +  +  G+   ++  K   I   +   N ++D+  + G + +
Sbjct: 403 EEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS-GICIDLSVSNALIDMYAKCGEVGD 461

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPD 284
           +  +  +     D+  W  ++ AC  F +     +V  ++   E+ PD
Sbjct: 462 SLKIFSSMGT-GDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPD 508


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/329 (37%), Positives = 209/329 (63%), Gaps = 5/329 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++Q ++VH+ V+      ++ V SSL+DMYGK G + E+ +VFD + ++++VS +A++ G
Sbjct: 158 IQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISG 217

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  + +FR++     + +  +F  +L + +GLA+L  GK+VH   +R+     
Sbjct: 218 YAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFF 277

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           ++++++L+D+Y+KCG + ++ ++F  MP R+ I+WN+M+ G+ ++G G+E +++F  MTE
Sbjct: 278 IVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTE 337

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+ + VLS CSH GL+D G   F  + KE      I HY C++DLLGR+G L+
Sbjct: 338 E-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQ 396

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LIE+       ++W  LLGAC    N  V E VA+K+++++P    +YV+L N+Y 
Sbjct: 397 KALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYA 456

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           A G W D F++R LM  + V K P KSWI
Sbjct: 457 AAGMWKDVFRVRKLMLENTVTKEPAKSWI 485



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 151/288 (52%), Gaps = 7/288 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G++VHA ++       V + + L+ +Y +CG +D++  V D M ++N VS +A++ G
Sbjct: 57  LGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISG 116

Query: 62  YCQTG----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q+G      E  IR+ R   + + F+   VL +C    +++  ++VH   ++ +    
Sbjct: 117 YSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESH 176

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+L+D+Y K G +  A ++F  +P R+ ++  ++ISG+AQ G  +EAL +F  +  
Sbjct: 177 MFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYS 236

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G + ++V+F  +L++ S +  ++ G++ H   + KE      ++  N ++D+  + G L
Sbjct: 237 SGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQ--NSLIDMYSKCGKL 294

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
             +  + +N   R   S   +L+G         V +       E+KPD
Sbjct: 295 LYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEEVKPD 342



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 3/176 (1%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +   + AC    AL  G++VH   ++      V + + L+ LY +CG +D A  +   MP
Sbjct: 44  YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMP 103

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS-HMGLIDRGR 204
            RN+++W +MISG++Q+GR  EAL +F  M   G K +  +   VL++C  H  +    +
Sbjct: 104 ERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQ 163

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            H  S+  +   +  +   + ++D+ G++G ++EA  + +    R   S   ++ G
Sbjct: 164 VH--SLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISG 217


>gi|293331543|ref|NP_001169748.1| uncharacterized protein LOC100383629 [Zea mays]
 gi|224031397|gb|ACN34774.1| unknown [Zea mays]
          Length = 546

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 126/329 (38%), Positives = 199/329 (60%), Gaps = 4/329 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           ++G+++H   +  GL  ++ VES L+DMY KCGL++++ RVF      + VS + +L G+
Sbjct: 178 REGQQIHGLAVKAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQDPDEVSLTVILAGF 237

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G  E   R+F EM      +D      VL A    A   LGK++H   I+R    + 
Sbjct: 238 AQNGLEEEAFRLFAEMVGKGIRVDANMVSAVLGAFGASAPFALGKQIHALAIKRCFGGNT 297

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + L+++Y+KCG +  + ++F   P +N +TWNS+I+ +A++G G E   +F+ M   
Sbjct: 298 YVCNGLINMYSKCGELQESIRVFDGTPSKNTVTWNSIIAAYARHGHGWEVFGLFESMEAD 357

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KP  V+F+ +L  CSH+G   +G +   SM  +Y I PK+EHY C+VD+LGRA  L++
Sbjct: 358 GVKPTDVTFLSLLHGCSHVGSPRKGLEILDSMPSKYGIHPKVEHYACVVDMLGRASQLDD 417

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A+  IE+   +  + LW+ L+GAC+  +N+ V E  A+K++ L PDC  +YVLL NVY +
Sbjct: 418 AKAFIEDGPFKDSALLWQSLMGACSFHKNSGVGECAAEKLLLLDPDCTAAYVLLSNVYSS 477

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            GRW+D  +I   M+  G++K  GKSWIE
Sbjct: 478 EGRWDDRARIMKRMRARGLRKDTGKSWIE 506



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 101/189 (53%), Gaps = 3/189 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH    + GL   V V ++L+  Y +C     + RVFD M  +N ++ +A++ G  +   
Sbjct: 83  VHGLAASCGLDAEVSVGNALITAYFECSSPGSAERVFDGMADRNVITWTAMVSGMARAER 142

Query: 68  FESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           +   + +FR+M    + +  S+   L ACAG  A R G+++H   ++     D+ +ES L
Sbjct: 143 YSESLSLFRQMRRAVDANRASYSSSLLACAGSRAAREGQQIHGLAVKAGLETDLHVESEL 202

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D+Y+KCG ++ A ++F      + ++   +++GFAQNG  EEA R+F +M   G + D 
Sbjct: 203 MDMYSKCGLMEDALRVFRSGQDPDEVSLTVILAGFAQNGLEEEAFRLFAEMVGKGIRVDA 262

Query: 185 VSFIGVLSA 193
                VL A
Sbjct: 263 NMVSAVLGA 271



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 9/238 (3%)

Query: 30  MYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFS 85
           MYG+CG   ++ RVFD+M  ++SVS ++LL       D  +++R            D  +
Sbjct: 1   MYGRCGCRGDAVRVFDEMALRDSVSWNSLLSASASATDALALLRRMLSAAPGAAACDHAT 60

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGC---KDVIIESALVDLYAKCGCVDFAHQIFL 142
              VL ACA          +   +   + C    +V + +AL+  Y +C     A ++F 
Sbjct: 61  LTTVLSACARAGGGTGSASLPAVHGLAASCGLDAEVSVGNALITAYFECSSPGSAERVFD 120

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            M  RN+ITW +M+SG A+  R  E+L +F  M       +  S+   L AC+       
Sbjct: 121 GMADRNVITWTAMVSGMARAERYSESLSLFRQMRR-AVDANRASYSSSLLACAGSRAARE 179

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           G++    +  +  ++  +   + ++D+  + GL+E+A  +  +     + SL  +L G
Sbjct: 180 GQQ-IHGLAVKAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQDPDEVSLTVILAG 236


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/321 (38%), Positives = 198/321 (61%), Gaps = 10/321 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  +S++  + KCG V+ + ++FD+M +KN V+ S ++ GY Q   F+  + +F+ ++
Sbjct: 184 DVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQ 243

Query: 80  -------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132
                  E  + S   V+ +CA L AL LG+  H   ++     ++I+ +ALVD+YA+CG
Sbjct: 244 SQGVRANETVMVS---VISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCG 300

Query: 133 CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
            +D A  +F  +P R+ ++W ++I+G A +G  E +L+ F  M E G  P  ++F  VLS
Sbjct: 301 SIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLS 360

Query: 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           ACSH GL++RG + F SM +++R++P++EHY CMVDLLGRAG LEEAE  +     + ++
Sbjct: 361 ACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNA 420

Query: 253 SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312
            +W  LLGAC   +NA + ERV K +++L P     YVLL N+Y     W    ++R +M
Sbjct: 421 PVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMM 480

Query: 313 KYSGVKKMPGKSWIEANSKLN 333
           K  G+KK PG S IE + +++
Sbjct: 481 KAKGLKKPPGHSLIELDGRVH 501



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 133/303 (43%), Gaps = 49/303 (16%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSL----VDMYGKCGLVDESHRVFDKMLKKNSVSSSA 57
           L   K +HA +I   +  +V   S L    VD      L+D + R+F ++   N    +A
Sbjct: 30  LTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNA 89

Query: 58  LLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +++G+  + + +     + + +      D  +F  ++++C  L  + +G + H   I+  
Sbjct: 90  MIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHG 149

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
             KDV ++++LV +YA  G  + A  IF +M   ++++W SMI GF + G  E A ++FD
Sbjct: 150 FEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFD 209

Query: 174 DMTE-------------------------------GGTKPDHVSFIGVLSACSHMGLIDR 202
            M E                                G + +    + V+S+C+H+G ++ 
Sbjct: 210 QMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALEL 269

Query: 203 GRKHFASMTKEYRIKPKIEHY----NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           G +       +Y +K  +         +VD+  R G +++A  + E+   R D+  W  L
Sbjct: 270 GER-----AHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPER-DTLSWTAL 323

Query: 259 LGA 261
           +  
Sbjct: 324 IAG 326



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 89/162 (54%), Gaps = 8/162 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+  H  V+  G+  N+++ ++LVDMY +CG +D++  VF+ + +++++S +AL+ G
Sbjct: 267 LELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAG 326

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  ++ F  M E  L     +F  VL AC+    +  G ++  + ++R    +
Sbjct: 327 LAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIF-ESMKRDHRVE 385

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
             +E    +VDL  + G ++ A +  L+MPV+ N   W +++
Sbjct: 386 PRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALL 427



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 103/234 (44%), Gaps = 14/234 (5%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL----VDLYAKCGCVDFAHQIFLQMP 145
           L  C+ L  L++   +H   IR     DV   S L    VD  +    +D+A +IF Q+ 
Sbjct: 24  LETCSDLTHLKI---IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQ 80

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             NL  +N+MI G + +   ++A   +      G  PD+++F  ++ +C+ +  I  G +
Sbjct: 81  NPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQ 140

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
               + K +  +  +   N +V +    G   EA TLI       D   W  ++     F
Sbjct: 141 AHGHIIK-HGFEKDVYVQNSLVHMYATFG-DTEAATLIFQRMYYVDVVSWTSMIRG---F 195

Query: 266 RNAHVAERVAKKIMELKPDCHL-SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
                 E  A+K+ +  P+ +L ++  + + Y     ++ A ++  +++  GV+
Sbjct: 196 NKCGDVES-ARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 208/367 (56%), Gaps = 35/367 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+++HA++  +G   +  +++++ +MY KCG + E+ +VF KM  KN V+ ++LL  
Sbjct: 402 LEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTM 461

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI--------------------------------- 88
           Y + GD  S  ++F EM   ++ S+ +                                 
Sbjct: 462 YIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTI 521

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             +L AC  L+AL  GK VH + ++     D ++ ++L+ +Y+KCG V  A  +F ++  
Sbjct: 522 ISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISN 581

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R+ + WN+M++G+ Q+G G EA+ +F  M +    P+ ++F  V+SAC   GL+  GR+ 
Sbjct: 582 RDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREI 641

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F  M +++R+KP  +HY CMVDLLGRAG L+EAE  I+   C  D S+W  LLGAC +  
Sbjct: 642 FRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHD 701

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  +AE  A  I+ L+P     YV L N+Y   GRW+D+ K+R +M   G+KK  G+S I
Sbjct: 702 NVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSI 761

Query: 327 EANSKLN 333
           E + +++
Sbjct: 762 EIDGRIH 768



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 163/326 (50%), Gaps = 14/326 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++ +E+H  V   G+  +V V ++L+ MY KCG +  +  +F KM ++N VS +A++Q 
Sbjct: 195 LEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQA 254

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q         ++ +M +  +     +F  +L +C    AL  G+ +H     R    D
Sbjct: 255 NAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETD 314

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG-----EEALRIF 172
           V++ +AL+ +Y KC C+  A + F +M  R++I+W++MI+G+AQ+G       +E  ++ 
Sbjct: 315 VVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLL 374

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
           + M   G  P+ V+F+ +L ACS  G +++GR+  A ++K    +        + ++  +
Sbjct: 375 ERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISK-VGFESDRSLQTAIFNMYAK 433

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
            G + EAE +    + ++  + W  LL       +   AE+V     E+     +S+ L+
Sbjct: 434 CGSIYEAEQVFSKMENKNVVA-WASLLTMYIKCGDLTSAEKV---FSEMSTRNVVSWNLM 489

Query: 293 DNVYRAVGRWNDAFKIRTLMKYSGVK 318
              Y   G     F++ + MK  G +
Sbjct: 490 IAGYAQSGDIAKVFELLSSMKVEGFQ 515



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 140/265 (52%), Gaps = 8/265 (3%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R + GK VH ++  LGL  ++ + +SL++ Y K G V    +VF +M  ++ V+ S+++ 
Sbjct: 93  RFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIA 152

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y            F  M++ ++     +F  +L+AC   + L   +E+H   ++ SG +
Sbjct: 153 AYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHT-VVKASGME 211

Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + +AL+ +Y+KCG +  A +IF +M  RN+++W ++I   AQ+ +  EA  +++ M
Sbjct: 212 TDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKM 271

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G  P+ V+F+ +L++C+    ++RGR+   S   E  ++  +   N ++ +  +   
Sbjct: 272 LQAGISPNAVTFVSLLNSCNTPEALNRGRR-IHSHISERGLETDVVVANALITMYCKCNC 330

Query: 236 LEEAETLIENADCRHDSSLWEVLLG 260
           +++A    +    R D   W  ++ 
Sbjct: 331 IQDARETFDRMSKR-DVISWSAMIA 354



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 122/238 (51%), Gaps = 9/238 (3%)

Query: 63  CQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           C+ G  +  I++   +++  L     ++G ++  CA L     GK VH Q        D+
Sbjct: 54  CKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDI 113

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + ++L++ Y+K G V    Q+F +M +R+++TW+SMI+ +A N    +A   F+ M + 
Sbjct: 114 YLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDA 173

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             +P+ ++F+ +L AC++  ++++ R+   ++ K   ++  +     ++ +  + G +  
Sbjct: 174 NIEPNRITFLSILKACNNYSMLEKARE-IHTVVKASGMETDVAVATALITMYSKCGEISL 232

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDN 294
           A  + +    R+  S W  ++ A    R  + A  + +K+++  + P+  +++V L N
Sbjct: 233 ACEIFQKMKERNVVS-WTAIIQANAQHRKLNEAFELYEKMLQAGISPNA-VTFVSLLN 288


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 197/335 (58%), Gaps = 4/335 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
            +G  +H   I +G   +V V  +LVD YGKCG ++ + +VF  +  ++ VS +AL+ G+
Sbjct: 366 PRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGF 425

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q    +  ++ FR+M+    + +  +   +L  C  L+ + L KEVHC  +R     + 
Sbjct: 426 AQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNA 485

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ ++L+  YAKCG +  +  +F ++PVRN +TWNS++ GF  +GR +E    F+ M E 
Sbjct: 486 LVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEA 545

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             KPDH +F  +LS+CSH G +D G K+F SM ++Y ++P++E Y CMVDLLGRAG L +
Sbjct: 546 NIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQ 605

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A  LI +  C  D  +W  LL +C    N  +AE VA  I EL        VLL N+Y  
Sbjct: 606 AYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSVGYRVLLANLYED 665

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            G  N+ F++RT +K  G+KK PG SWIE ++ ++
Sbjct: 666 SGNLNEVFRVRTDIKQMGLKKQPGCSWIEVDNSIH 700



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 145/288 (50%), Gaps = 6/288 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H  ++ LGL  +V V ++L++MY KCG  + S ++F +    N V   +++  
Sbjct: 264 LAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLN 323

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G     +  F E      F   ++L    RAC+ L+    G  +H   I+     D
Sbjct: 324 CAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSD 383

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V +  ALVD Y KCG +++A Q+F  +  R+L++WN++ISGFAQN   +EAL+ F DM  
Sbjct: 384 VFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDMQS 443

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP+ V+   +LS C+H+ ++   ++    + + +     + + N ++    + G + 
Sbjct: 444 KQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVN-NSLISAYAKCGDIH 502

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK-KIMELKPD 284
            + T+ E    R++ +   +LLG     R   +     K K   +KPD
Sbjct: 503 SSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPD 550



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 112/207 (54%), Gaps = 11/207 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +GK++H  ++  G   ++ V++SL+ MY KCG    +  +F++M +++SVS + ++ G
Sbjct: 55  VNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISG 114

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFG------IVLRACAGLAALRLGKEVHCQYIRRSGC 115
           +CQ+GD+   + +FR M +    S+         L +CA +  L  G E+H   +++   
Sbjct: 115 FCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVD 174

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFL-----QMPVRNLITWNSMISGFAQNGRGEEALR 170
            D  + SAL+++Y KCG +  A  +F      ++  RN+  WN MI G+  N     AL 
Sbjct: 175 SDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALE 234

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHM 197
           +F +M E G  PD  + + VL  CS +
Sbjct: 235 LFVEMLELGISPDSSTVVVVLVLCSQL 261



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 135/294 (45%), Gaps = 13/294 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDK-----MLKKNSVSSS 56
           L  G E+H  ++  G+  +  + S+L++MY KCG +  +  VF++     ++ +N    +
Sbjct: 158 LTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWN 217

Query: 57  ALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
            ++ GY         + +F EM E+    D  +  +VL  C+ L  L +GK++H   +  
Sbjct: 218 VMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGL 277

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               DV + +AL+++Y KCG  + + QIF +    NL+ W S++   AQNG   EAL  F
Sbjct: 278 GLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFF 337

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            +       PD V  +  L ACS + L  RG        K       +     +VD  G+
Sbjct: 338 SEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIK-MGFDSDVFVGGALVDFYGK 396

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
            G +E A+ +      R D   W  L+      + A  A +  + +   ++KP+
Sbjct: 397 CGDMEYAQQVFYGLSTR-DLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPN 449



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 120/240 (50%), Gaps = 26/240 (10%)

Query: 64  QTGDFESVIRIFREMEE----IDLFSF-GIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           + G FE  IR++ +  E    ++ F F   +++A  GL  +  GK++H   ++    +D+
Sbjct: 15  EDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDI 74

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE- 177
            ++++L+ +Y KCG    A  +F +M  R+ ++WN+MISGF Q+G   ++L +F  M + 
Sbjct: 75  FVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKE 134

Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK------EYRIKPKIEHYNCMVDLL 230
            GG+  + V+ +  LS+C+ +  +  G +    + K      E+ +   IE Y       
Sbjct: 135 CGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYM------ 188

Query: 231 GRAGLLEEAETLIE----NADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPD 284
            + G ++ AE + E    N     + ++W V++    +     +A  +  +++EL   PD
Sbjct: 189 -KCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPD 247


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/330 (39%), Positives = 204/330 (61%), Gaps = 8/330 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK + + V   G   N+ + ++L+DMY KCG  D +  +FD + +K+ +S + ++ GY  
Sbjct: 282 GKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSY 341

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRS--GCKDV 118
              +E  + +F  M   ++     +F  +L ACA L AL LGK VH  YI ++     + 
Sbjct: 342 LSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHA-YIDKNLRNSSNA 400

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + ++L+D+YAKCGC++ A ++F  M  RNL +WN+M+SGFA +G  E AL +F +M   
Sbjct: 401 SLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNK 460

Query: 179 GT-KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  +PD ++F+GVLSAC+  GL+D G ++F SM ++Y I PK++HY CM+DLL RA   E
Sbjct: 461 GLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFE 520

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE L++N +   D ++W  LL AC         E VA+++ +L+P+   ++VLL N+Y 
Sbjct: 521 EAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYA 580

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             GRW+D  +IRT +   G+KK+PG + IE
Sbjct: 581 GAGRWDDVARIRTRLNDKGMKKVPGCTSIE 610



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 151/292 (51%), Gaps = 38/292 (13%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKC----------------------------- 34
           +GK++HA  + L L  N  V +S++ MY                                
Sbjct: 149 EGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYV 208

Query: 35  --GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF----SFGI 88
             G +D++ R+FD++  K+ VS +A++ GY Q+G FE  I  F EM+E ++     +  +
Sbjct: 209 SQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVV 268

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           VL AC    +  LGK +   ++R +G   ++ + +AL+D+Y KCG  D A ++F  +  +
Sbjct: 269 VLSACGHTRSGELGKWI-GSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEK 327

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           ++I+WN+MI G++     EEAL +F+ M     KP+ V+F+G+L AC+ +G +D G+   
Sbjct: 328 DVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVH 387

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           A + K  R       +  ++D+  + G +E AE +  +   R+ +S W  +L
Sbjct: 388 AYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS-WNAML 438



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 134/300 (44%), Gaps = 50/300 (16%)

Query: 6   KEVHAKVITLGLCGNVVVESSLV---------DMYGKCGLVDESHRVFDKMLKKNSVSSS 56
           K++H+ +I  GL   V V+S L+         D+     L +E+     +  K N    +
Sbjct: 45  KQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQ----QHHKHNVFIWN 100

Query: 57  ALLQGYCQTGDFESVI----RIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR- 111
           +L++GY  +    S +    R+     + +  +F  + ++C    A   GK++H   ++ 
Sbjct: 101 SLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKL 160

Query: 112 ------------------------------RSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
                                         +S  +D +  +AL+  Y   GC+D A ++F
Sbjct: 161 ALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLF 220

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
            ++PV+++++WN+MISG+ Q+GR EEA+  F +M E    P+  + + VLSAC H    +
Sbjct: 221 DEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGE 280

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            G K   S  ++      ++  N ++D+  + G  + A  L +  +   D   W  ++G 
Sbjct: 281 LG-KWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIE-EKDVISWNTMIGG 338


>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
          Length = 700

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/333 (41%), Positives = 205/333 (61%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ V   V + G+  + ++ S+LV MY KCG + E+ RVFD +  K+ V+ +A++ GY Q
Sbjct: 238 GRWVEEWVRSAGMEVDSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVVAWNAMITGYAQ 297

Query: 65  TGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     I +F  M E  L    I    VL +CA + AL+LG E+    +RR    +V +
Sbjct: 298 NGMSNEAIALFHSMREAGLCPDKITLVGVLSSCAAVGALKLGVELDTYAMRRGLYNNVYV 357

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGG 179
            +ALVD+YAKCG ++ A  +F +MP +N  +WN++I G A NGRG +A++ F+ M  E G
Sbjct: 358 GTALVDMYAKCGDLEKATHVFGKMPFKNEASWNALICGLAFNGRGYDAIQQFELMRDEKG 417

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +PD ++FIGVLSAC H GL++ GR+ F S+T  ++I P+IEHY+C+VDLL RAG LEEA
Sbjct: 418 LQPDDITFIGVLSACVHAGLLEYGRQLFNSLTPVFKIIPRIEHYSCIVDLLARAGHLEEA 477

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
              IE    + D+ +   LL AC   +N  V ERV  +IM+L+P    +YV+   +Y   
Sbjct: 478 WDFIEEMPGKVDAVMLGALLAACRKCKNTEVGERVINRIMKLEPSNSWNYVVSSKIYATS 537

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            + +++ ++  LM+  GV K PG SW+E N K+
Sbjct: 538 DKMDESARMIGLMRERGVNKTPGCSWVEVNGKV 570



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G E+    +  GL  NV V ++LVDMY KCG ++++  VF KM  KN  S +AL+ G
Sbjct: 336 LKLGVELDTYAMRRGLYNNVYVGTALVDMYAKCGDLEKATHVFGKMPFKNEASWNALICG 395

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
               G     I+ F  M      + D  +F  VL AC     L  G+++   +   +   
Sbjct: 396 LAFNGRGYDAIQQFELMRDEKGLQPDDITFIGVLSACVHAGLLEYGRQL---FNSLTPVF 452

Query: 117 DVI--IE--SALVDLYAKCGCVDFAHQIFLQMP 145
            +I  IE  S +VDL A+ G ++ A     +MP
Sbjct: 453 KIIPRIEHYSCIVDLLARAGHLEEAWDFIEEMP 485



 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 9/128 (7%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRS-GCKDVIIESALVDLYAKCGCVD---FA 137
           D ++   +L A A   A  L +  H    +   G  D  + S L+ +Y+   C+D    A
Sbjct: 116 DAYTLPFLLLAAARCPAPALARSAHALLEKIGLGDHDHTVHS-LITMYS---CLDDHLAA 171

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSH 196
            ++F  +  R++++WNSM+  + + G   E   +   M TEG   P+ V+   VL+AC  
Sbjct: 172 RRVFDGISHRDVVSWNSMVKAYERAGMVAEVEGMLRSMVTEGAVAPNGVTLAVVLTACRD 231

Query: 197 MGLIDRGR 204
            G +  GR
Sbjct: 232 AGNLVLGR 239


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/331 (38%), Positives = 202/331 (61%), Gaps = 17/331 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFR--- 76
           +VV  ++++D     G + E+  +FD+M ++N V+ ++++ G    G + ++I+I+    
Sbjct: 117 DVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKG 176

Query: 77  -EMEEIDLFSF----GI---------VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
            E+E + LFS     G+         VL  C  LA+L  G++VH Q +R     D+ + S
Sbjct: 177 FELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSS 236

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            L+ +Y KCG +  A ++F +   ++++ WNS+I+G+AQ+G GE+AL +F DM      P
Sbjct: 237 VLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAP 296

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           D ++FIGVLSACS+ G +  G + F SM  +Y++ PK EHY CMVDLLGRAG L EA  L
Sbjct: 297 DEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNL 356

Query: 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302
           IEN     D+ +W  LLGAC T +N  +AE  AKK+++L+P+    Y+LL N+Y +  RW
Sbjct: 357 IENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRW 416

Query: 303 NDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            D  ++R  M+   ++K PG SWIE + K++
Sbjct: 417 KDVVELRKTMRAKNLRKSPGCSWIEVDKKVH 447



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 17/206 (8%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N +  + LV  Y + G++ E+ +VFDKM ++N VS +A+++GY Q G  E    +F  M 
Sbjct: 24  NTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMP 83

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E ++ S+ ++L    GL       E   Q       KDV+  + ++D     G +  A +
Sbjct: 84  ERNVVSWTVML---GGLIEDGRVDEAR-QLFDMMPVKDVVASTNMIDGLCSEGRLIEARE 139

Query: 140 IFLQMPVRNLITWNSMISG-------------FAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           IF +MP RN++ W SMISG             + + G   EAL +F  M   G +P   S
Sbjct: 140 IFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPS 199

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTK 212
            I VLS C  +  +D GR+  + + +
Sbjct: 200 VISVLSVCGSLASLDHGRQVHSQLVR 225



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH++++      ++ V S L+ MY KCG +  + RVFD+   K+ V  ++++ G
Sbjct: 213 LDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAG 272

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + +F +M       D  +F  VL AC+    ++ G E+  + ++     D
Sbjct: 273 YAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIF-ESMKSKYQVD 331

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
              E  + +VDL  + G ++ A  +   MPV  + I W +++
Sbjct: 332 PKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALL 373



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
           A ++F +MP  N I+WN ++SG+ QNG   EA ++FD M E       VS+  ++     
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV----VSWTAMIRGYVQ 68

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            GLI+     F  M +       +  +  M+  L   G ++EA  L +    +   +   
Sbjct: 69  EGLIEEAELLFWRMPER-----NVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTN 123

Query: 257 VLLGACTTFR 266
           ++ G C+  R
Sbjct: 124 MIDGLCSEGR 133


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/357 (38%), Positives = 214/357 (59%), Gaps = 22/357 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSS----- 56
           LK+G+EVH++V+ LGL  N  +   L+++YGKCG  +++ RVFD+M +++ V+S+     
Sbjct: 146 LKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINY 205

Query: 57  -------------ALLQGYCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAAL 99
                        A++ G  + G+    + +FR M+  D+    +    VL AC+ L AL
Sbjct: 206 YFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGAL 265

Query: 100 RLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF 159
           +LG+ V     +     +  +  AL+++Y++CG +D A ++F QM  +N+IT+NSMI GF
Sbjct: 266 QLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGF 325

Query: 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219
           A +G+  EA+ +F  + + G  P  V+F+GVL+ACSH GL + G + F SM K+Y I+P+
Sbjct: 326 ALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQ 385

Query: 220 IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM 279
           IEHY CMVDLLGR G LEEA + I       D  +   LL AC    N  +AERVAK ++
Sbjct: 386 IEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLV 445

Query: 280 ELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
             K     +Y+LL N Y + G+W +A ++RT M+  G++K PG S IE N++++  L
Sbjct: 446 ACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFL 502



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 27/266 (10%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
            Q   ++AK+I      +  V   L+ +      +  + ++F      N    +AL+ G 
Sbjct: 46  NQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGL 105

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
             +  +   I ++ +M       D ++   VL+AC    AL+ G+EVH Q ++     + 
Sbjct: 106 VLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNR 165

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT------------------WNSMISGFA 160
            I   L++LY KCG  + A ++F +MP R+++                   W +MI G  
Sbjct: 166 SIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLV 225

Query: 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI 220
           +NG    AL +F +M      P+ V+ + VLSACS +G +  GR   + M K +RI  ++
Sbjct: 226 RNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDK-HRI--EL 282

Query: 221 EHY--NCMVDLLGRAGLLEEAETLIE 244
            H+    ++++  R G ++EA+ + E
Sbjct: 283 NHFVGGALINMYSRCGDIDEAQRVFE 308


>gi|110741594|dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]
          Length = 527

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 131/335 (39%), Positives = 206/335 (61%), Gaps = 5/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++GK++H +V  LGL  +V V++SL++MYG+CG ++ S  VF+K+  K + S S+++  
Sbjct: 148 IREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSA 207

Query: 62  YCQTGDFESVIRIFREM-EEIDLFS--FGIV--LRACAGLAALRLGKEVHCQYIRRSGCK 116
               G +   + +FR M  E +L +   G+V  L ACA   AL LG  +H   +R     
Sbjct: 208 RAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISEL 267

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++I++++LVD+Y KCGC+D A  IF +M  RN +T+++MISG A +G GE ALR+F  M 
Sbjct: 268 NIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMI 327

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +PDHV ++ VL+ACSH GL+  GR+ FA M KE +++P  EHY C+VDLLGRAGLL
Sbjct: 328 KEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLL 387

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA   I++     +  +W   L  C   +N  + +  A+++++L       Y+L+ N+Y
Sbjct: 388 EEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLY 447

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
                W+D  + RT +   G+K+ PG S +E   K
Sbjct: 448 SQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGK 482



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 121/246 (49%), Gaps = 8/246 (3%)

Query: 56  SALLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           + +++GY     FE  +  + EM     E D F++  +L+AC  L ++R GK++H Q  +
Sbjct: 101 NTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFK 160

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                DV ++++L+++Y +CG ++ +  +F ++  +   +W+SM+S  A  G   E L +
Sbjct: 161 LGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLL 220

Query: 172 FDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           F  M +E   K +    +  L AC++ G ++ G      + +    +  I     +VD+ 
Sbjct: 221 FRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNIS-ELNIIVQTSLVDMY 279

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSY 289
            + G L++A  + +  + R++ +   ++ G              +K I E L+PD H+ Y
Sbjct: 280 VKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPD-HVVY 338

Query: 290 VLLDNV 295
           V + N 
Sbjct: 339 VSVLNA 344


>gi|413917687|gb|AFW57619.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 611

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 126/329 (38%), Positives = 199/329 (60%), Gaps = 4/329 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           ++G+++H   +  GL  ++ VES L+DMY KCGL++++ RVF      + VS + +L G+
Sbjct: 243 REGQQIHGLAVKAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQDPDEVSLTVILAGF 302

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G  E   R+F EM      +D      VL A    A   LGK++H   I+R    + 
Sbjct: 303 AQNGLEEEAFRLFAEMVGKGIRVDANMVSAVLGAFGASAPFALGKQIHALAIKRCFGGNT 362

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + L+++Y+KCG +  + ++F   P +N +TWNS+I+ +A++G G E   +F+ M   
Sbjct: 363 YVCNGLINMYSKCGELQESIRVFDGTPSKNTVTWNSIIAAYARHGHGWEVFGLFESMEAD 422

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KP  V+F+ +L  CSH+G   +G +   SM  +Y I PK+EHY C+VD+LGRA  L++
Sbjct: 423 GVKPTDVTFLSLLHGCSHVGSPRKGLEILDSMPSKYGIHPKVEHYACVVDMLGRASQLDD 482

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A+  IE+   +  + LW+ L+GAC+  +N+ V E  A+K++ L PDC  +YVLL NVY +
Sbjct: 483 AKAFIEDGPFKDSALLWQSLMGACSFHKNSGVGECAAEKLLLLDPDCTAAYVLLSNVYSS 542

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            GRW+D  +I   M+  G++K  GKSWIE
Sbjct: 543 EGRWDDRARIMKRMRARGLRKDTGKSWIE 571



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 101/189 (53%), Gaps = 3/189 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH    + GL   V V ++L+  Y +C     + RVFD M  +N ++ +A++ G  +   
Sbjct: 148 VHGLAASCGLDAEVSVGNALITAYFECSSPGSAERVFDGMADRNVITWTAMVSGMARAER 207

Query: 68  FESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           +   + +FR+M    + +  S+   L ACAG  A R G+++H   ++     D+ +ES L
Sbjct: 208 YSESLSLFRQMRRAVDANRASYSSSLLACAGSRAAREGQQIHGLAVKAGLETDLHVESEL 267

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D+Y+KCG ++ A ++F      + ++   +++GFAQNG  EEA R+F +M   G + D 
Sbjct: 268 MDMYSKCGLMEDALRVFRSGQDPDEVSLTVILAGFAQNGLEEEAFRLFAEMVGKGIRVDA 327

Query: 185 VSFIGVLSA 193
                VL A
Sbjct: 328 NMVSAVLGA 336



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 9/247 (3%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80
           VVV +SLV MYG+CG   ++ RVFD+M  ++SVS ++LL       D  +++R       
Sbjct: 57  VVVWNSLVAMYGRCGCRGDAVRVFDEMALRDSVSWNSLLSASASATDALALLRRMLSAAP 116

Query: 81  ----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC---KDVIIESALVDLYAKCGC 133
                D  +   VL ACA          +   +   + C    +V + +AL+  Y +C  
Sbjct: 117 GAAACDHATLTTVLSACARAGGGTGSASLPAVHGLAASCGLDAEVSVGNALITAYFECSS 176

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
              A ++F  M  RN+ITW +M+SG A+  R  E+L +F  M       +  S+   L A
Sbjct: 177 PGSAERVFDGMADRNVITWTAMVSGMARAERYSESLSLFRQMRR-AVDANRASYSSSLLA 235

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+       G++    +  +  ++  +   + ++D+  + GL+E+A  +  +     + S
Sbjct: 236 CAGSRAAREGQQ-IHGLAVKAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQDPDEVS 294

Query: 254 LWEVLLG 260
           L  +L G
Sbjct: 295 LTVILAG 301



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 89  VLRACAGLAALRLGKEVHC---------QYIRRSGCKD--VIIESALVDLYAKCGCVDFA 137
           +L  C     LRLG  +H          +   R  C    V++ ++LV +Y +CGC   A
Sbjct: 17  LLARCGRAGDLRLGTSLHAIVAKNPSHFRLCPRRSCLQHVVVVWNSLVAMYGRCGCRGDA 76

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
            ++F +M +R+ ++WNS++S  A        LR       G    DH +   VLSAC+  
Sbjct: 77  VRVFDEMALRDSVSWNSLLSASASATDALALLRRMLSAAPGAAACDHATLTTVLSACARA 136

Query: 198 G 198
           G
Sbjct: 137 G 137


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/333 (38%), Positives = 211/333 (63%), Gaps = 9/333 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQ 60
           L+ GK++H+ ++  G+  +  V+++L+  Y K G VD   R+F +M  +++++S ++++ 
Sbjct: 602 LELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMIS 661

Query: 61  GYCQTGDFES----VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY   G  +     V  +    + +D  +F IVL ACA +AAL  G E+H   +R     
Sbjct: 662 GYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLES 721

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV++ESALVD+Y+KCG +D+A ++F  M  +N  +WNSMISG+A++G G +AL IF++M 
Sbjct: 722 DVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQ 781

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E G  PDHV+F+ VLSACSH GL++RG  +F  M ++Y I P+IEHY+C++DLLGRAG L
Sbjct: 782 ESGESPDHVTFVSVLSACSHAGLVERGLDYFELM-EDYGILPRIEHYSCVIDLLGRAGEL 840

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRN---AHVAERVAKKIMELKPDCHLSYVLLD 293
           ++ +  ++    + ++ +W  +L AC   ++     +    ++ ++EL+P   ++YVL  
Sbjct: 841 DKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSS 900

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
             + A+GRW D  K R  MK + VKK  G+SW+
Sbjct: 901 KFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWV 933



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 145/277 (52%), Gaps = 9/277 (3%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L++G+EVHA V+  G +   + V + LV+MY KCG +D++ RVF  M  ++ +S + ++ 
Sbjct: 398 LRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIIT 457

Query: 61  GYCQTGDFESVIRIFREMEE--IDLFSFGIV--LRACAGLAALRLGKEVHCQYIRRSGCK 116
              Q G  E+ +  +  M +  I   +F  +  L +CAGL  L  G+++HC  ++     
Sbjct: 458 ALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYL 517

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG-EEALRIFDDM 175
           D  + +ALV +Y +CG +    +IF  M   ++++WNS++   A +     E++++F +M
Sbjct: 518 DTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNM 577

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G  P+ V+F+  L+A + + +++ G++  + M K + +       N ++    ++G 
Sbjct: 578 MKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLK-HGVTEDNAVDNALMSCYAKSGD 636

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
           ++  E L      R D+  W  ++       N H+ E
Sbjct: 637 VDSCERLFSRMSGRRDAISWNSMISG--YIYNGHLQE 671



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 141/276 (51%), Gaps = 11/276 (3%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++  +V+  G   ++ V S+LV  + + G++DE+  ++  + ++N+V+ + L+ G  +  
Sbjct: 299 QLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQ 358

Query: 67  DFESVIRIF---REMEEIDLFSFGIVLRACAGLAA----LRLGKEVHCQYIRRSGC-KDV 118
             E+   IF   R+   +++ ++ ++L A A  +     LR G+EVH   +R     + +
Sbjct: 359 HGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKI 418

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + LV++YAKCG +D A ++F  M  R+ I+WN++I+   QNG  E A+  +  M + 
Sbjct: 419 AVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQN 478

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
              P + + I  LS+C+ +GL+  G++      K + +       N +V + G  G + E
Sbjct: 479 SIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVK-WGLYLDTSVSNALVKMYGECGRMSE 537

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
              +  N+   HD   W  ++G   +   A + E V
Sbjct: 538 CWEIF-NSMSAHDVVSWNSIMGVMAS-SQAPITESV 571



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 24/256 (9%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + +H +V+  GL  ++ + + LV+ Y K   +D + RVFD M  +N+VS + L+ G+  +
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 66  GDFESVIRIFREME------EIDLFSFGIVLRACAGLAALRLG--KEVHCQYIRRSGCKD 117
           G  E    +FR M           F+FG VLRAC      RLG   +VH    +     +
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 118 VIIESALVDLYAKC--GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             + +AL+ +Y  C  G    A ++F   PVR+LITWN+++S +A+ G       +F  M
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 176 TEGGT----KPDHVSFIGV-----LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
               +    +P   +F  +     LS+CS +GL+D   + F  + K       +   + +
Sbjct: 265 QYDDSGIELRPTEHTFGSLITATYLSSCS-LGLLD---QLFVRVLKS-GCSSDLYVGSAL 319

Query: 227 VDLLGRAGLLEEAETL 242
           V    R G+L+EA+ +
Sbjct: 320 VSAFARHGMLDEAKDI 335



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 135/279 (48%), Gaps = 23/279 (8%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDE--SHRVFDKMLKKNSVSSSAL 58
           RL    +VH  V       N  V ++L+ MYG C +     + RVFD    ++ ++ +AL
Sbjct: 185 RLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNAL 244

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL--------FSFGIVLRACAGLAALRLGKEVHCQYI 110
           +  Y + GD      +FR M+  D          +FG ++ A   L++  LG  +   ++
Sbjct: 245 MSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATY-LSSCSLGL-LDQLFV 302

Query: 111 R--RSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
           R  +SGC  D+ + SALV  +A+ G +D A  I+L +  RN +T N +I+G  +   GE 
Sbjct: 303 RVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEA 362

Query: 168 ALRIFDDMTEGGTKPDHV-SFIGVLSACSHMGLID----RGRKHFASMTKEYRIKPKIEH 222
           A  IF  M    +   +V +++ +LSA +     +    +GR+  A + +   I  KI  
Sbjct: 363 AAEIF--MGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAV 420

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            N +V++  + G +++A  + +  + R D   W  ++ A
Sbjct: 421 SNGLVNMYAKCGAIDKACRVFQLMEAR-DRISWNTIITA 458


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 204/335 (60%), Gaps = 8/335 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +  +VH+ +I  G C +    ++LV++Y KCG V  + R+F+++  ++ VS + ++ G+ 
Sbjct: 262 EAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFL 321

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-KDV 118
           Q+G  E  + +F +M+    E + F+FG +L ACA   A + G+  H   ++      DV
Sbjct: 322 QSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADV 381

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT-- 176
           ++ SA+VD+Y+KCG +  A + F +MP R++ +WN +I G+AQNG G +AL+++++M   
Sbjct: 382 VVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLL 441

Query: 177 -EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  P+ V+F+GVL ACSH GL+  G  +F  M  ++ IKP  EHY CMVDLLGRAGL
Sbjct: 442 GPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGL 501

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L+EAE LI     + D+ +W  LLGAC    +  +  R A+ +   +P    +YVLL N 
Sbjct: 502 LQEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANS 561

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           Y  +G W +A +IR +M+  GV+K  G SW+E  +
Sbjct: 562 YTDIGEWGEAVEIREVMEARGVEKTAGCSWVEIGT 596



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 128/239 (53%), Gaps = 4/239 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VHA ++ +    +  + ++L+ MY + G + ++ +VFD M  +  V+ +A++  Y +
Sbjct: 162 GQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSK 221

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  I +FR++       D +++ IVL   A    +    +VH   I R  C D   
Sbjct: 222 YGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFT 281

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV+LY+KCG V  A ++F ++P +++++W  +I GF Q+G  EEA+ +F  M  G  
Sbjct: 282 NNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDI 341

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           +P+  +F G+L AC+      +GR     + K   +   +   + +VD+  + G + +A
Sbjct: 342 EPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDA 400



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 149/328 (45%), Gaps = 45/328 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y K GLV E+ ++FD   K++  S + +L G  +       +  F +M 
Sbjct: 80  SVVSYNTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMR 139

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 D F++ I++  C     L  G++VH   ++     D  I + L+ +YA+ G + 
Sbjct: 140 CSSVRPDNFTYAIIIPCCD----LGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIG 195

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A ++F  MP R L+TWN+MIS +++ GRG++++ +F  +   G   D  ++  VL+  +
Sbjct: 196 DARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFA 255

Query: 196 -----------HMGLIDRGR-----------------KHFASMTKEYRIKPKIEHYNCMV 227
                      H  +I+RG                   + AS ++ +   P  +  +  V
Sbjct: 256 ARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTV 315

Query: 228 DLLG--RAGLLEEAETL---IENADCRHDSSLWEVLLGAC---TTFRNAHVAERVAKKIM 279
            ++G  ++G +EEA  L   ++  D   +S  +  LLGAC     F+       +  K  
Sbjct: 316 IIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFG 375

Query: 280 ELKPDCHLSYVLLDNVYRAVGRWNDAFK 307
            L  D  +   ++D +Y   G   DA +
Sbjct: 376 LLGADVVVGSAVVD-MYSKCGEMGDALR 402


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/352 (38%), Positives = 210/352 (59%), Gaps = 21/352 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS--------- 52
           L  GK++H +V+ +G+  +  V +SL+DMY KCG ++++  +F  + +++S         
Sbjct: 536 LGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCD 595

Query: 53  ------VSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLG 102
                 VS S+++ GY Q G FE  ++ F  M     E+D F+   V+ ACA    L LG
Sbjct: 596 DAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELG 655

Query: 103 KEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
           ++VH  YI++ G   DV + S+++D+Y KCG ++ A  IF Q   RN++ W SMISG A 
Sbjct: 656 RQVH-GYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCAL 714

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
           +G+G EA+R+F+ M   G  P+ VSF+GVL+ACSH GL++ G K+F  M + Y I+P  E
Sbjct: 715 HGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAE 774

Query: 222 HYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281
           H+ CMVDL GRAG L E +  I N      SS+W   L +C   +N  +   V KK++EL
Sbjct: 775 HFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLEL 834

Query: 282 KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +P     Y+L  ++     RW +A KIR+LM+  GVKK P +SWI+  ++++
Sbjct: 835 EPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVH 886



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 151/329 (45%), Gaps = 60/329 (18%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H  ++  GL  + V+ +S++D Y KC     + ++F  M +K++VS + ++  Y Q
Sbjct: 407 GKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQ 466

Query: 65  TGDFESVIRIFREMEEIDL-----------------------------------FSFGIV 89
            GD +  + +FR++   D                                     +F I 
Sbjct: 467 IGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIA 526

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---- 145
           L   + L+ L LGK++H Q ++     D  + ++L+D+Y KCG ++ A  IF  +P    
Sbjct: 527 LVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESS 586

Query: 146 -----------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
                      V   ++W+SM+SG+ QNGR E+AL+ F  M     + D  +   V+SAC
Sbjct: 587 MMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSAC 646

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHDS 252
           +  G+++ GR+    + K   I   ++ +  + ++D+  + G L +A  +   A  R + 
Sbjct: 647 ASAGVLELGRQVHGYIQK---IGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDR-NV 702

Query: 253 SLWEVLLGACTTFRNAHVAERVAKKIMEL 281
            LW  ++  C      H   R A ++ EL
Sbjct: 703 VLWTSMISGCAL----HGQGREAVRLFEL 727



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 130/274 (47%), Gaps = 39/274 (14%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +HAK+I  G  G  +  + L+++Y K   ++++H++F+++ + +  S + L+ G+ + G 
Sbjct: 310 LHAKLIKNGCVG--IRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGL 367

Query: 68  FESVIRIFREMEE----IDLFSFGIVLRACAG-LAALRLGKEVHCQYIRRSGCKDVIIES 122
              V+ +F +M++     + F+  IVL++C+  +   R+GK +H   +R     D ++ +
Sbjct: 368 SADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNN 427

Query: 123 ALVDLYAKCGCVDFAHQ-------------------------------IFLQMPVRNLIT 151
           +++D Y KC C  +A +                               +F Q+P ++  +
Sbjct: 428 SILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAAS 487

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
           WN+MI G  +NG    AL +   M   G   + ++F   L   S + ++  G++    + 
Sbjct: 488 WNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVL 547

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
           K   +       N ++D+  + G +E+A  + ++
Sbjct: 548 KVGVLDDGFVR-NSLIDMYCKCGEMEKASVIFKH 580


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 130/338 (38%), Positives = 201/338 (59%), Gaps = 5/338 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVF-DKMLKKNSVSSSALL 59
           RL QG+++H+ ++ +G    + V +SL+ MY KC  + ++  VF D     N VS +A+L
Sbjct: 478 RLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAIL 537

Query: 60  QGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
               Q        R+++EM     + D  +   +L  CA L +L +G +VHC  I+    
Sbjct: 538 SACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLI 597

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + + L+D+YAKCG +  A  +F      ++++W+S+I G+AQ G G EAL +F  M
Sbjct: 598 LDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIM 657

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           T  G +P+ V+++G LSACSH+GL++ G + + SM  E+ I P  EH++C+VDLL RAG 
Sbjct: 658 TNLGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGC 717

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L EAET I+ +    D + W+ LL AC T  N  +AER A  I++L P    + V+L N+
Sbjct: 718 LHEAETFIQKSGLDADITAWKTLLAACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNI 777

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + + G W +  K+R LMK  GV+K+PG+SWIE   K +
Sbjct: 778 HASAGNWEEVAKLRKLMKQMGVQKVPGQSWIEVKDKFH 815



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 157/301 (52%), Gaps = 16/301 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K++H  V+      ++++++ +++MYGKCG + ++ +VFD M   N VS ++++ G
Sbjct: 175 LDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISG 234

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     I ++ +M    +  D  +FG V++AC     + LG+++H   I+      
Sbjct: 235 YSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHH 294

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  ++AL+ +Y   G ++ A  +F ++P ++LI+W +MI+G+ Q G   EAL +F D+  
Sbjct: 295 LTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLR 354

Query: 178 GGT-KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            GT +P+   F  V SACS +  ++ G K    M  ++ ++  +     + D+  + G L
Sbjct: 355 QGTYQPNEFIFGSVFSACSSLLELEYG-KQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFL 413

Query: 237 EEAETL---IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVL 291
             A+     I+N D       W  ++ A     +A+ A    ++++   L PD  ++Y+ 
Sbjct: 414 PSAKMAFCQIKNPDIVS----WNAIIAAFADNGDANEAIDFFRQMIHIGLTPDS-ITYIS 468

Query: 292 L 292
           L
Sbjct: 469 L 469



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 131/263 (49%), Gaps = 6/263 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA VI      ++  +++L+ MY   G ++ +  VF ++  K+ +S   ++ GY Q
Sbjct: 279 GRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQ 338

Query: 65  TGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            G     + +FR++      + + F FG V  AC+ L  L  GK+VH   ++    ++V 
Sbjct: 339 LGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVF 398

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
              +L D+YAK G +  A   F Q+   ++++WN++I+ FA NG   EA+  F  M   G
Sbjct: 399 AGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIG 458

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PD +++I +L  C     +++GR+  + + K      +I   N ++ +  +   L +A
Sbjct: 459 LTPDSITYISLLCTCGSPVRLNQGRQIHSYIVK-IGFDKEITVCNSLLTMYTKCSHLHDA 517

Query: 240 ETLIENADCRHDSSLWEVLLGAC 262
             +  +     +   W  +L AC
Sbjct: 518 LNVFRDISRNANLVSWNAILSAC 540



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 89/159 (55%), Gaps = 1/159 (0%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           ++  ++ ACA   +L   K++H   ++ +    +I+++ ++++Y KCG +  A ++F  M
Sbjct: 161 TYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTM 220

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
            + N+++W SMISG++QNG+  +A+ ++  MT  G  PD ++F  V+ AC   G ID GR
Sbjct: 221 QLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGR 280

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
           +  A + K +     +   N ++ +    G +E A  + 
Sbjct: 281 QLHAHVIKSW-FGHHLTSQNALISMYTNFGQIEHASNVF 318


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/333 (41%), Positives = 195/333 (58%), Gaps = 7/333 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KKNSVSSSALL 59
           L+ G+ +HA+    GL   V V++SLV +YG CGL + +HRVFD++   ++N VS +++L
Sbjct: 138 LRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVL 197

Query: 60  QGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G+   G    V+ +FREM E++     F+   VL ACA +  L LG+ VH    +    
Sbjct: 198 NGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLV 257

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDD 174
            +    +AL+DLYAKCG VD A ++F +M V R +++W S+I G A NG G +AL++F  
Sbjct: 258 GNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSM 317

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M      P  ++ +GVL ACSH GL+D G ++F  M  EY I P+IEH  CMVDLLGRAG
Sbjct: 318 MEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAG 377

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            +EEA   I       ++ +W  LLGAC   +   + E    +++EL P     YVLL N
Sbjct: 378 RVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSN 437

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           +Y  VGRW D   +R  M   GV+K PG S +E
Sbjct: 438 LYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVE 470



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 20/206 (9%)

Query: 57  ALLQGYCQTGD---FESVIRIF--------------REMEEIDLFSFGIVLRACAGLAAL 99
           A+L G   + D     +V+RIF              R +   D  ++  +L+ACA L AL
Sbjct: 79  AVLSGLLPSPDPFSLNTVLRIFASSARPRVALALHRRHLAPPDTHTYPPLLQACARLLAL 138

Query: 100 RLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--RNLITWNSMIS 157
           R G+ +H +  +      V ++++LV LY  CG  + AH++F ++P   RNL++WNS+++
Sbjct: 139 RYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLN 198

Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
           GFA NGR  E L +F +M E    PD  + + VL+AC+ +G++  GR+    + K   + 
Sbjct: 199 GFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVG 258

Query: 218 PKIEHYNCMVDLLGRAGLLEEAETLI 243
                 N ++DL  + G +++A  + 
Sbjct: 259 -NAHAGNALIDLYAKCGGVDDARKMF 283


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 200/333 (60%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+V  +    GL  N  V +S++ M+ K   ++++ R F+ + +KN VS +  L G C+
Sbjct: 392 GKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             +FE   ++  E+ E +L    F+F  +L   A + ++R G+++H Q ++     +  +
Sbjct: 452 NLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPV 511

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+ +Y+KCG +D A ++F  M  RN+I+W SMI+GFA++G     L  F+ M E G 
Sbjct: 512 CNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGV 571

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ V+++ +LSACSH+GL+  G +HF SM ++++IKPK+EHY CMVDLL RAGLL +A 
Sbjct: 572 KPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAF 631

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I     + D  +W   LGAC    N  + +  A+KI+EL P+   +Y+ L N+Y   G
Sbjct: 632 EFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAG 691

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W ++ ++R  MK   + K  G SWIE   K++
Sbjct: 692 KWEESTEMRRKMKERNLVKEGGCSWIEVGDKIH 724



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 158/316 (50%), Gaps = 14/316 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSAL 58
           L  GK++H+  I  GL  +V  E SLVDMY KC   G VD+  +VFD+M   + +S +AL
Sbjct: 285 LSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTAL 342

Query: 59  LQGYCQTGDFES-VIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           + GY +  +  +  I +F EM      E + F+F    +AC  L+  R+GK+V  Q  +R
Sbjct: 343 ITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR 402

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               +  + ++++ ++ K   ++ A + F  +  +NL+++N+ + G  +N   E+A ++ 
Sbjct: 403 GLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLL 462

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            ++TE        +F  +LS  +++G I +G +  + + K   +       N ++ +  +
Sbjct: 463 SEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVK-LGLSCNQPVCNALISMYSK 521

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSYVL 291
            G ++ A  +    + R+  S   ++ G         V E   + I E +KP+  ++YV 
Sbjct: 522 CGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPN-EVTYVA 580

Query: 292 LDNVYRAVGRWNDAFK 307
           + +    VG  ++ ++
Sbjct: 581 ILSACSHVGLVSEGWR 596



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 113/214 (52%), Gaps = 11/214 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML---KKNSVSSSAL 58
            + GK VHA++I   +  + V+ +SL+ +Y K G   ++  VF+ M    K++ VS SA+
Sbjct: 78  FRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAM 137

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           +  Y   G     I++F E  E+ L    + +  V+RAC+    + +G+ V   ++ ++G
Sbjct: 138 MACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGR-VTLGFLMKTG 196

Query: 115 C--KDVIIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
               DV +  +L+D++ K     + A+++F +M   N++TW  MI+   Q G   EA+R 
Sbjct: 197 HFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRF 256

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           F DM   G + D  +   V SAC+ +  +  G++
Sbjct: 257 FLDMVLSGFESDKFTLSSVFSACAELENLSLGKQ 290



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 78  MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
           +  +D  +F  +L++C      RLGK VH + I      D ++ ++L+ LY+K G    A
Sbjct: 57  IRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKA 116

Query: 138 HQIFLQM---PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
             +F  M     R++++W++M++ +  NGR  +A+++F +  E G  P+   +  V+ AC
Sbjct: 117 EDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRAC 176

Query: 195 SHMGLIDRGR 204
           S+   +  GR
Sbjct: 177 SNSDFVGVGR 186


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 212/337 (62%), Gaps = 6/337 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--GLVDESHRVFDKMLKKNSVSSSALLQ 60
             G+ +H  VI  G   +V + ++L+ MY K   G + E+  +F+ +  K+ VS +++L 
Sbjct: 319 NNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILT 378

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G  QTG  E  ++ F  M     +ID +SF  VLR+C+ LA  +LG+++H   ++     
Sbjct: 379 GLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLES 438

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + S+L+ +Y+KCG ++ A + F +    + ITWN+++ G+AQ+G+   AL +F  M 
Sbjct: 439 NEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLME 498

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E   K DH++F+ VL+ACSH+GL+++G K    M  +Y + P++EHY C VDL GR+G L
Sbjct: 499 EKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRL 558

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA+ LIE    + D+++W+  LGAC +  N  +A +VA  ++E++P+ H +YVLL N+Y
Sbjct: 559 EEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMY 618

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             + RW++  K++ LMK  GVKK+PG SWIE N+ ++
Sbjct: 619 GNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVNNNVH 655



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 137/264 (51%), Gaps = 19/264 (7%)

Query: 9   HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF 68
           H+  + LG   +V   +++++ Y KC  +  +  +FD+M  ++SVS + ++ G+   G+ 
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 69  ESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           E+   + R M     E+D ++FG +L+  A      LG++VH   I+    ++V   SAL
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D+YAKC  ++ A+  FL +   N ++WN+MI+G+AQ G  E A  + D M + G K D 
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYR---IKPKIEHYNCMVDLL----GRAGLLE 237
            ++  +L       L+D     F ++T +     IK  +E  N M + L     + G L+
Sbjct: 201 GTYAPLLP------LLDDA--DFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLD 252

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           +A+ + +++    D   W  LL A
Sbjct: 253 DAKRIFDSSAGIRDLVTWNSLLAA 276



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 138/266 (51%), Gaps = 6/266 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH+ +I +G   NV   S+L+DMY KC  +++++  F  + K N+VS +A++ GY Q
Sbjct: 118 GQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQ 177

Query: 65  TGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD E+   +     +E E++D  ++  +L          L  ++H + I+        +
Sbjct: 178 AGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTM 237

Query: 121 ESALVDLYAKCGCVDFAHQIF-LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
            +AL+  Y+KCG +D A +IF     +R+L+TWNS+++ +    + + A ++  DM E G
Sbjct: 238 CNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHG 297

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            +PD  S+  ++SAC +  + + GR  H   + + +     I +    + L    G ++E
Sbjct: 298 FEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKE 357

Query: 239 AETLIENADCRHDSSLWEVLLGACTT 264
           A  + E+ + +   S   +L G   T
Sbjct: 358 ALCIFESLEFKDRVSWNSILTGLSQT 383


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 199/333 (59%), Gaps = 6/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA+++ LGL    ++ ++L+DMY KCG++D +   F    +K+++S +AL+ GY Q
Sbjct: 356 GKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQ 415

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  +++F +M       D  +F  +++A + LA + LG+++H  Y+ RSG K  + 
Sbjct: 416 NGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLH-SYLIRSGYKSSVF 474

Query: 121 E-SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
             S LVD+YAKCGC+D A + F +MP RN I+WN++IS +A  G  + A+++F+ M   G
Sbjct: 475 SGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCG 534

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PD V+F+ VL+ACSH GL D   K+F  M  +Y I P  EHY C++D LGR G   + 
Sbjct: 535 FNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQV 594

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
           + ++     + D  +W  +L +C    N  +A   A K+  ++P     YV+L N+Y   
Sbjct: 595 QKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARA 654

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           G+W DA  ++ +M+  GV+K  G SW+E   K+
Sbjct: 655 GQWEDAACVKKIMRDRGVRKESGYSWVEIKQKI 687



 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 155/286 (54%), Gaps = 8/286 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VHA V+      NV V +SL+D Y KC  +D+  R+FD+M ++++VS + ++  Y  
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW 314

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                +V+R+FREM+++     +  +  +L     L  + +GK++H Q +      + ++
Sbjct: 315 NQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLL 374

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+Y+KCG +D A   F     ++ I+W ++I+G+ QNG+ EEAL++F DM   G 
Sbjct: 375 GNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGL 434

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD  +F  ++ A S + +I  GR+  + + +    K  +   + +VD+  + G L+EA 
Sbjct: 435 RPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEAL 493

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
              +    R+  S W  ++ A   +  A  A ++ + ++     PD
Sbjct: 494 RTFDEMPERNSIS-WNAVISAYAHYGEAKNAIKMFEGMLHCGFNPD 538



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 129/244 (52%), Gaps = 5/244 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
             +H   I  GL  +V V ++L+D Y K GL+  + RVF +M  K++V+ +A++ G  + 
Sbjct: 155 PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKE 214

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G     +++F  M    +    F+F  +L   AG+A L LG +VH   +R +   +V + 
Sbjct: 215 GLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVN 274

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++L+D Y+KC C+D   ++F +MP R+ +++N +I+ +A N      LR+F +M + G  
Sbjct: 275 NSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFD 334

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
              + +  +LS    +  +  G++  A +     +  +    N ++D+  + G+L+ A++
Sbjct: 335 RQVLPYATMLSVAGSLPDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGMLDAAKS 393

Query: 242 LIEN 245
              N
Sbjct: 394 NFSN 397



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 122/280 (43%), Gaps = 32/280 (11%)

Query: 35  GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACA 94
           G +  +  +FD+M  KN  S + +L  Y  +GD  +   +F      +  ++ I++RA A
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 95  -------GLAALR--LGKEV---------------------HCQYIRRSGCKDVIIESAL 124
                   L+  R  LG+ V                     H   I+      V + + L
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 176

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D Y K G +  A ++FL+M  ++ +T+N+M+ G ++ G   +AL++F  M   G    H
Sbjct: 177 LDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATH 236

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
            +F  +L+  + M  +  G +  A + +   +   +   N ++D   +   L++   L +
Sbjct: 237 FTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL-NVFVNNSLLDFYSKCDCLDDMRRLFD 295

Query: 245 NADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
               R D+  + V++ A    + A    R+ +++ +L  D
Sbjct: 296 EMPER-DNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFD 334


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 132/343 (38%), Positives = 210/343 (61%), Gaps = 18/343 (5%)

Query: 2   LKQGKEVHAKVITL----GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSA 57
           ++ G++VH+ V       G   ++ + ++L+D+Y KCG V+ +  +F+ +  K+ VS + 
Sbjct: 212 IELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNT 271

Query: 58  LLQGYCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYI 110
           L+ GY  T  ++  + +F+EM        ++ L S   VL ACA L A+ +G+ +H  YI
Sbjct: 272 LIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLS---VLPACAHLGAIDIGRWIHV-YI 327

Query: 111 RR---SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
            +       +  + ++L+D+YAKCG ++ AHQ+F  M  R+L +WN+MI GFA +GR   
Sbjct: 328 DKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANA 387

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
           A  +F  M     +PD ++F+G+LSACSH GL+D GR+ F SMT++Y + PK+EHY CM+
Sbjct: 388 AFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMI 447

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287
           DLLG +GL +EAE +I       D  +W  LL AC    N  +AE  A+K+++++P+   
Sbjct: 448 DLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSG 507

Query: 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           SYVLL N+Y   GRW D  ++R ++   G+KK+PG S IE +S
Sbjct: 508 SYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDS 550



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 148/299 (49%), Gaps = 40/299 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            ++G+++HA+V+ LG   +  V +SL+ MY + G ++++ +VFD    ++ VS +AL+ G
Sbjct: 80  FEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITG 139

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI--------------------------------- 88
           Y   GDF S  ++F E+ E D+ S+                                   
Sbjct: 140 YASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTL 199

Query: 89  --VLRACAGLAALRLGKEVHC----QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
             V+ ACA   ++ LG++VH               + I +AL+DLY+KCG V+ A  +F 
Sbjct: 200 VSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFE 259

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            +  +++++WN++I G+      +EAL +F +M   G  P+ V+ + VL AC+H+G ID 
Sbjct: 260 GLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDI 319

Query: 203 GRKHFASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           GR     + K+ + +  +      ++D+  + G +E A  +  +   R  SS   ++ G
Sbjct: 320 GRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFG 378



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 39/259 (15%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAA 98
           VF+ + + N +  + +L+G+  + D  S + ++  M  +    + +SF  +L++CA   A
Sbjct: 20  VFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKA 79

Query: 99  LRLGKEVHCQ-------------------YIRRSGC------------KDVIIESALVDL 127
              G+++H Q                   Y R  G             +DV+  +AL+  
Sbjct: 80  FEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITG 139

Query: 128 YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187
           YA  G    A ++F ++  R++++WN+MI+G+ +NGR EEAL +F +M     +PD  + 
Sbjct: 140 YASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTL 199

Query: 188 IGVLSACSHMGLIDRGRK---HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           + V+SAC+  G I+ GR+          ++     ++  N ++DL  + G +E A  L E
Sbjct: 200 VSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFE 259

Query: 245 NADCRHDSSLWEVLLGACT 263
              C+ D   W  L+G  T
Sbjct: 260 GLSCK-DVVSWNTLIGGYT 277



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 13/193 (6%)

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           + +A  +F  +   NL+ WN+M+ G A +     AL ++  M   G  P+  SF  +L +
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHD 251
           C+     + GR+  A + K   +   ++ Y    ++ +  R G LE+A  + + +  R  
Sbjct: 74  CAKSKAFEEGRQIHAQVLK---LGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 252 SSLWEVLLGACT--TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309
            S   ++ G  +   FR+   A +V  +I E      +S+  +   Y   GR+ +A ++ 
Sbjct: 131 VSCTALITGYASRGDFRS---ARKVFDEITERDV---VSWNAMITGYVENGRYEEALELF 184

Query: 310 TLMKYSGVKKMPG 322
             M  + V+   G
Sbjct: 185 KEMMRTNVRPDEG 197


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 129/333 (38%), Positives = 206/333 (61%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK VH   +  G   +V V SSLVDMY KCG + ++  +FD+M ++N VS S ++ GY Q
Sbjct: 145 GKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQ 204

Query: 65  TGDFESVIRIFRE--MEEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             D    + +F++  +E++D+  F+F  V+R C+    L LGK +H   ++ S      +
Sbjct: 205 LDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFV 264

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SAL+ LY+KCG ++ A+Q+F ++P RNL  WNSM+   AQ+   +    +F++M   G 
Sbjct: 265 GSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGM 324

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ + F+ VL ACSH GL+++GR++F S+ ++Y I+P+ EHY  +VDLLGRAG L+EA 
Sbjct: 325 KPNFIXFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDLLGRAGKLQEAV 383

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
           ++I+    R   S+W  LL  C   ++  +A  VA +I+E+       +VLL N Y A G
Sbjct: 384 SVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAG 443

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           R+ +A ++R +++  GVKK  G SW+E  +K++
Sbjct: 444 RYEEAARMRKMLRDRGVKKETGLSWVEEGNKVH 476



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 137/274 (50%), Gaps = 10/274 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG ++HA ++  GL    +V  +L+++Y K  L   S +VFD+  KK+S + S+++  
Sbjct: 41  LRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISA 100

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q       ++ FR M       D   +    +AC  L    +GK VHC  ++     D
Sbjct: 101 FAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCD 160

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S+LVD+YAKCG +  A  +F +MP RN+++W+ MI G+AQ   G EAL +F     
Sbjct: 161 VFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALI 220

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                +  +F  V+  CS    ++ G+  H   +   +     +   + ++ L  + G++
Sbjct: 221 EDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVG--SALISLYSKCGVI 278

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHV 270
           E A  + +    R +  LW  +L AC   ++AH 
Sbjct: 279 EGAYQVFDEIPTR-NLGLWNSMLIACA--QHAHT 309



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 7/182 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H   + +    +  V S+L+ +Y KCG+++ +++VFD++  +N    +++L  
Sbjct: 243 LELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIA 302

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q    + V  +F EM  +    +   F  VL AC+    +  G+E +   +R  G + 
Sbjct: 303 CAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGRE-YFSLMRDYGIEP 361

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISGFAQNGRGEEALRIFDDM 175
                A LVDL  + G +  A  +  QMP+R   + W ++++G   +   E A  + D +
Sbjct: 362 ETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRI 421

Query: 176 TE 177
            E
Sbjct: 422 LE 423


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 133/327 (40%), Positives = 202/327 (61%), Gaps = 8/327 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +H  V+ LG   N+ V+++L++ YG  G +  S ++FD+M +++ +S S+L+  + + G 
Sbjct: 115 IHTLVLKLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGL 174

Query: 68  FESVIRIFREME--EIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCK-DVII 120
            +  + +F++M+  E D+   G+V+     A + L AL LG  VH  +I R G    V +
Sbjct: 175 PDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVHA-FISRIGVNLTVSL 233

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SAL+D+Y++CG +D + ++F +MP RN++TW ++I+G A +GRG EAL  F DM E G 
Sbjct: 234 GSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGL 293

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD ++F+GVL ACSH GL++ GR+ F+SM  EY I+P +EHY CMVDLLGRAG++ EA 
Sbjct: 294 KPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAF 353

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             +E    R +S +W  LLGAC       +AE+  ++I EL P     YVLL N Y  VG
Sbjct: 354 DFVEGMRVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVG 413

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            W     +R  M+ S + K PG S + 
Sbjct: 414 NWVKKEGVRNSMRESKIVKEPGLSLVH 440



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VHA +  +G+   V + S+L+DMY +CG +D S +VFD+M  +N V+ +AL+ G
Sbjct: 212 LELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALING 271

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     +  F +M E     D  +F  VL AC+    +  G+ V        G + 
Sbjct: 272 LAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEP 331

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            +     +VDL  + G V  A      M VR N + W +++
Sbjct: 332 ALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTLL 372


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 199/333 (59%), Gaps = 6/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA+++ LGL    ++ ++L+DMY KCG++D +   F    +K+++S +AL+ GY Q
Sbjct: 554 GKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQ 613

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  +++F +M       D  +F  +++A + LA + LG+++H  Y+ RSG K  + 
Sbjct: 614 NGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLH-SYLIRSGYKSSVF 672

Query: 121 E-SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
             S LVD+YAKCGC+D A + F +MP RN I+WN++IS +A  G  + A+++F+ M   G
Sbjct: 673 SGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCG 732

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PD V+F+ VL+ACSH GL D   K+F  M  +Y I P  EHY C++D LGR G   + 
Sbjct: 733 FNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQV 792

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
           + ++     + D  +W  +L +C    N  +A   A K+  ++P     YV+L N+Y   
Sbjct: 793 QKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARA 852

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           G+W DA  ++ +M+  GV+K  G SW+E   K+
Sbjct: 853 GQWEDAACVKKIMRDRGVRKESGYSWVEIKQKI 885



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 148/271 (54%), Gaps = 8/271 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV V +SL+D Y KC  +D+  R+FD+M ++++VS + ++  Y       +V+R+FREM+
Sbjct: 468 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 527

Query: 80  EI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           ++     +  +  +L     L  + +GK++H Q +      + ++ +AL+D+Y+KCG +D
Sbjct: 528 KLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLD 587

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A   F     ++ I+W ++I+G+ QNG+ EEAL++F DM   G +PD  +F  ++ A S
Sbjct: 588 AAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASS 647

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
            + +I  GR+  + + +    K  +   + +VD+  + G L+EA    +    R+  S W
Sbjct: 648 SLAMIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS-W 705

Query: 256 EVLLGACTTFRNAHVAERVAKKIME--LKPD 284
             ++ A   +  A  A ++ + ++     PD
Sbjct: 706 NAVISAYAHYGEAKNAIKMFEGMLHCGFNPD 736



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 119/240 (49%), Gaps = 13/240 (5%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
             +H   I  GL  +V V ++L+D Y K GL+  + RVF +M  K++V+ +A++ G  + 
Sbjct: 369 PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKE 428

Query: 66  GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV 125
           G     +++F  M            RA      L L +  H +  R +   +V + ++L+
Sbjct: 429 GLHTQALQLFAAMR-----------RAGYSRHPLHLLQYSHSRS-RSTSVLNVFVNNSLL 476

Query: 126 DLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185
           D Y+KC C+D   ++F +MP R+ +++N +I+ +A N      LR+F +M + G     +
Sbjct: 477 DFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVL 536

Query: 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
            +  +LS    +  +  G++  A +     +  +    N ++D+  + G+L+ A++   N
Sbjct: 537 PYATMLSVAGSLPDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGMLDAAKSNFSN 595



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 30/175 (17%)

Query: 35  GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACA 94
           G +  +  +FD+M  KN  S + +L  Y  +GD  +   +F      +  ++ I++RA A
Sbjct: 271 GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 330

Query: 95  -------GLAALR--LGKEV---------------------HCQYIRRSGCKDVIIESAL 124
                   L+  R  LG+ V                     H   I+      V + + L
Sbjct: 331 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 390

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +D Y K G +  A ++FL+M  ++ +T+N+M+ G ++ G   +AL++F  M   G
Sbjct: 391 LDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAG 445



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K++   + ++  Y+  G +  A  +FL  P RN  TW  M+   A  GR  +AL +F  M
Sbjct: 286 KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 345

Query: 176 TEGGTKPDHVSFIGVLS 192
              G  PD V+   VL+
Sbjct: 346 LGEGVIPDRVTVTTVLN 362


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 131/335 (39%), Positives = 206/335 (61%), Gaps = 5/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++GK++H +V  LGL  +V V++SL++MYG+CG ++ S  VF+K+  K + S S+++  
Sbjct: 148 IREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSA 207

Query: 62  YCQTGDFESVIRIFREM-EEIDLFS--FGIV--LRACAGLAALRLGKEVHCQYIRRSGCK 116
               G +   + +FR M  E +L +   G+V  L ACA   AL LG  +H   +R     
Sbjct: 208 RAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISEL 267

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++I++++LVD+Y KCGC+D A  IF +M  RN +T+++MISG A +G GE ALR+F  M 
Sbjct: 268 NIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMI 327

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +PDHV ++ VL+ACSH GL+  GR+ FA M KE +++P  EHY C+VDLLGRAGLL
Sbjct: 328 KEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLL 387

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA   I++     +  +W   L  C   +N  + +  A+++++L       Y+L+ N+Y
Sbjct: 388 EEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLY 447

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
                W+D  + RT +   G+K+ PG S +E   K
Sbjct: 448 SQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGK 482



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 121/246 (49%), Gaps = 8/246 (3%)

Query: 56  SALLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           + +++GY     FE  +  + EM     E D F++  +L+AC  L ++R GK++H Q  +
Sbjct: 101 NTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFK 160

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                DV ++++L+++Y +CG ++ +  +F ++  +   +W+SM+S  A  G   E L +
Sbjct: 161 LGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLL 220

Query: 172 FDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           F  M +E   K +    +  L AC++ G ++ G      + +    +  I     +VD+ 
Sbjct: 221 FRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNIS-ELNIIVQTSLVDMY 279

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSY 289
            + G L++A  + +  + R++ +   ++ G              +K I E L+PD H+ Y
Sbjct: 280 VKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPD-HVVY 338

Query: 290 VLLDNV 295
           V + N 
Sbjct: 339 VSVLNA 344


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 209/366 (57%), Gaps = 36/366 (9%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           ++G+E+H  ++   +    +++  LVDMY KCG +D + +V+D+ +KK+ + ++ ++  +
Sbjct: 597 QKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAF 656

Query: 63  CQTGDFESVIRIFREME-----------------------------------EIDLFSFG 87
             +G       +F +ME                                   E D+ +  
Sbjct: 657 VNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMV 716

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            ++  C+ L AL  G ++H   I++      V++E+ALVD+Y+KCG +  A  +F  M  
Sbjct: 717 TIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNG 776

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +N+++WN+MISG++++G  +EAL ++++M + G  P+ V+F+ +LSACSH GL++ G + 
Sbjct: 777 KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRI 836

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SM ++Y I+ K EHY CMVDLLGRAG LE+A+  +E      + S W  LLGAC   +
Sbjct: 837 FTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHK 896

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           +  +    A+++ EL P     YV++ N+Y A GRW +   IR +MK  GVKK PG SWI
Sbjct: 897 DMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWI 956

Query: 327 EANSKL 332
           E NS++
Sbjct: 957 EINSEI 962



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 157/295 (53%), Gaps = 36/295 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + +G+E+H  ++   L  ++++ S+LVDMY KCG+V+E+H+VF  +L++N VS +ALL G
Sbjct: 393 IGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAG 452

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q G  E  + ++ +M+     + D F+F  +L  CA       G+++H   IR +  K
Sbjct: 453 YVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITK 512

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++I+E+ LV +Y++CG +++A +IF +M  RN  +WNSMI G+ QNG  +EALR+F  M 
Sbjct: 513 NIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQ 572

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK------------------------------H 206
             G KPD  S   +LS+C  +    +GR+                               
Sbjct: 573 LNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMD 632

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +A    +  IK  +   N MV     +G   +A+ L +  + R +++LW  +L  
Sbjct: 633 YAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQR-NTALWNSILAG 686



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 180/329 (54%), Gaps = 23/329 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH+K+I  G  G+  V ++L+DMY KC   +   +VFD+M ++N V+ ++++    Q
Sbjct: 295 GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 354

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G F   + +F  M+E     + F+ G +L A AGLA +  G+E+H   +R     D+I+
Sbjct: 355 FGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIIL 414

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGG 179
            SALVD+Y+KCG V+ AHQ+F  +  RN +++N++++G+ Q G+ EEAL ++ DM +E G
Sbjct: 415 GSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDG 474

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK---HF--ASMTKEYRIKPKIEHYNCMVDLLGRAG 234
            +PD  +F  +L+ C++    ++GR+   H   A++TK   ++ ++ H   M    GR  
Sbjct: 475 IQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVH---MYSECGRLN 531

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDC-HLSYVL 291
             +E    I N     ++  W  ++           A R+ K++    +KPDC  LS +L
Sbjct: 532 YAKE----IFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSML 587

Query: 292 LDNVYRA---VGRWNDAFKIRTLMKYSGV 317
              V  +    GR    F +R  M+  G+
Sbjct: 588 SSCVSLSDSQKGRELHNFIVRNTMEEEGI 616



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 157/292 (53%), Gaps = 36/292 (12%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
            QG+++HA +I   +  N++VE+ LV MY +CG ++ +  +F++M ++N+ S +++++GY
Sbjct: 496 NQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGY 555

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G+ +  +R+F++M+    + D FS   +L +C  L+  + G+E+H   +R +  ++ 
Sbjct: 556 QQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEG 615

Query: 119 IIESALVDLYAKCGCVDFAHQI-------------------------------FLQMPVR 147
           I++  LVD+YAKCG +D+A ++                               F QM  R
Sbjct: 616 ILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQR 675

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           N   WNS+++G+A  G  +E+   F +M E   + D ++ + +++ CS +  ++ G +  
Sbjct: 676 NTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLH 735

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           + + K+  +   +     +VD+  + G + +A T+ +N + ++  S W  ++
Sbjct: 736 SLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVS-WNAMI 786



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 145/283 (51%), Gaps = 13/283 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++ + V+  GL  N+ V  +LVD Y + G +D++    D++   + V+ +A++ GY + 
Sbjct: 195 RQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKI 254

Query: 66  GDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
             +E    IF  M +I    D F+F   LR C  L +   GK+VH + I      D  + 
Sbjct: 255 LSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVG 314

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +AL+D+YAKC   +   ++F +M  RN +TWNS+IS  AQ G   +AL +F  M E G K
Sbjct: 315 NALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYK 374

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            +  +   +L A + +  I +GR+    + +   +   I   + +VD+  + G++EEA  
Sbjct: 375 SNRFNLGSILMASAGLADIGKGRELHGHLVRNL-LNSDIILGSALVDMYSKCGMVEEAHQ 433

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
           +  +   R++ S   +L G        +V E  A++ +EL  D
Sbjct: 434 VFRSLLERNEVSYNALLAG--------YVQEGKAEEALELYHD 468



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 113/211 (53%), Gaps = 7/211 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDE---SHRVFDKMLKKNSVSSSAL 58
            ++GK +H ++I+ G   +  + + ++ +Y + G +D+   + ++F++M ++N  + + +
Sbjct: 87  FQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTM 146

Query: 59  LQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           +  Y +  D+  V+R++  M       D F+F  V++AC  +  +   +++    ++   
Sbjct: 147 ILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGL 206

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             ++ +  ALVD YA+ G +D A     ++   +++TWN++I+G+ +    EEA  IFD 
Sbjct: 207 NCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDR 266

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           M + G  PD+ +F   L  C  +   D G++
Sbjct: 267 MLKIGVCPDNFTFASALRVCGALRSRDGGKQ 297



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 4/172 (2%)

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           +   +++   +  +++ C    + + GK +H Q I      D  + + ++ LYA+ GC+D
Sbjct: 64  KPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLD 123

Query: 136 ---FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
              +A ++F +MP RNL  WN+MI  +A+     E LR++  M   G   D  +F  V+ 
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIK 183

Query: 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           AC  M  +   R+  +S+ K   +   +     +VD   R G +++A T ++
Sbjct: 184 ACIAMEDMGGVRQLQSSVVKA-GLNCNLFVGGALVDGYARFGWMDDAVTSLD 234


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 210/335 (62%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G++VH+ V   G   N+ + ++L+D+Y KCG V+ +  +F  +  K+ +S + L+ G
Sbjct: 212 IELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGG 271

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR-SGCK 116
           Y     ++  + +F+EM    E  +  +   VL ACA L A+ +G+ +H    +R  G  
Sbjct: 272 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVT 331

Query: 117 DVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +   + ++L+D+YAKCG ++ AHQ+F  M  ++L +WN+MI GFA +GR + +  +F  M
Sbjct: 332 NASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRM 391

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G +PD ++F+G+LSACSH G++D GR  F SMT++Y++ PK+EHY CM+DLLG +GL
Sbjct: 392 RKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGL 451

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            +EAE +I   +   D  +W  LL AC    N  +AE  A+ +++++P+   SY+LL N+
Sbjct: 452 FKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNI 511

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           Y + GRW D  +IR L+    +KK+PG S IE +S
Sbjct: 512 YASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDS 546



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 147/294 (50%), Gaps = 37/294 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             +G+++H +V+ LG   ++ V +SL+ MY +   ++++++VFD+   ++ VS +AL+ G
Sbjct: 80  FTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITG 139

Query: 62  YCQTGDFESVIRIFREM----------------------EEIDLF-------------SF 86
           Y   GD  S  ++F E+                      E ++LF             ++
Sbjct: 140 YASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTY 199

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA   ++ LG++VH          ++ I +AL+DLY+KCG V+ A  +F  +  
Sbjct: 200 VTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSY 259

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +++I+WN++I G+      +EAL +F +M   G  P+ V+ + VL AC+H+G ID GR  
Sbjct: 260 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWI 319

Query: 207 FASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
              + K  + +         ++D+  + G +E A  +  N+      S W  ++
Sbjct: 320 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVF-NSMLHKSLSSWNAMI 372



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 130/256 (50%), Gaps = 37/256 (14%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAA 98
           VF+ + + N +  + +++G+  + D  S + ++  M  + L    ++F  +L++CA    
Sbjct: 20  VFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKT 79

Query: 99  LRLGKEVHCQYIR-------------------------------RSGCKDVIIESALVDL 127
              G+++H Q ++                               RS  +DV+  +AL+  
Sbjct: 80  FTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITG 139

Query: 128 YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187
           YA  G +  A ++F ++PV+++++WN+MISG+A+ G  +EAL +F++M +   +PD  ++
Sbjct: 140 YASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTY 199

Query: 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
           + VLSAC+H G I+ GR+   S   ++     ++  N ++DL  + G +E A  L +   
Sbjct: 200 VTVLSACAHSGSIELGRQ-VHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLS 258

Query: 248 CRHDSSLWEVLLGACT 263
            + D   W  L+G  T
Sbjct: 259 YK-DVISWNTLIGGYT 273


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/337 (38%), Positives = 210/337 (62%), Gaps = 10/337 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH+ +   G   N+ + ++L+D+Y KCG V+ +  +F+ +  K+ VS + L+ GY  
Sbjct: 217 GRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTH 276

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI- 119
              ++  + +F+EM    E  +  +   +L ACA L A+ +G+ +H  YI +   KDV  
Sbjct: 277 MNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHV-YIDKK-LKDVTN 334

Query: 120 ---IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + ++L+D+YAKCG ++ AHQ+F  M  ++L +WN+MI GFA +GR      +F  M 
Sbjct: 335 APSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMR 394

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +PD ++F+G+LSACSH G +D GR  F SMT++Y I PK+EHY CM+DLLG +GL 
Sbjct: 395 KNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLF 454

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA+ +I+      D  +W  LL AC    N  +AE  A+ +M+++P+   SYVLL N+Y
Sbjct: 455 KEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIY 514

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              G W++  K+R L+   G+KK+PG S IE +S+++
Sbjct: 515 ATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVH 551



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 146/296 (49%), Gaps = 41/296 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            ++G+++H  V+ LG   ++ V +SL+ MY + G ++++H+VFD+   ++ VS +AL+ G
Sbjct: 82  FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITG 141

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFG---------------------------------- 87
           Y  +G+  S   +F E+   D+ S+                                   
Sbjct: 142 YASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTM 201

Query: 88  -IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA   ++ LG++VH          ++ I +AL+DLY+KCG V+ A  +F  +  
Sbjct: 202 VTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSC 261

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-- 204
           +++++WN++I G+      +EAL +F +M   G  P+ V+ + +L AC+H+G ID GR  
Sbjct: 262 KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWI 321

Query: 205 -KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             +     K+    P +     ++D+  + G +E A  +  N+      S W  ++
Sbjct: 322 HVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVF-NSMLHKSLSSWNAMI 374



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 127/256 (49%), Gaps = 37/256 (14%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAA 98
           VF  + + N +  + +L+GY  + D  S ++++  M  + L    ++F  +L++CA   A
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81

Query: 99  LRLGKEVHCQYIR-------------------------------RSGCKDVIIESALVDL 127
              G+++H   ++                               RS  +DV+  +AL+  
Sbjct: 82  FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITG 141

Query: 128 YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187
           YA  G +  A ++F ++PV+++++WN+MISG+A+ G  +EAL +F +M +   +PD  + 
Sbjct: 142 YASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTM 201

Query: 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
           + VLSAC+    ++ GR+   S   ++     ++  N ++DL  + G +E A  L E   
Sbjct: 202 VTVLSACAQSRSVELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLS 260

Query: 248 CRHDSSLWEVLLGACT 263
           C+ D   W  L+G  T
Sbjct: 261 CK-DVVSWNTLIGGYT 275



 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 26/129 (20%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           +A  +F  +   N + WN+M+ G+A +     AL+++  M   G  P+  +F  +L +C+
Sbjct: 18  YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
                + G++    + K    +P +  +  ++ +  + G LE+A  + + +  R   S  
Sbjct: 78  KSKAFEEGQQIHGHVLK-LGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYT 136

Query: 256 EVLLGACTT 264
            ++ G  ++
Sbjct: 137 ALITGYASS 145


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 208/371 (56%), Gaps = 39/371 (10%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L  GKE H  V+  G   +V V +SL+DMY K   +  +  VFD M  +N  + ++L+ G
Sbjct: 641  LNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSG 700

Query: 62   YCQTGDFESVIRIFREMEE----IDLFSF-GIV--------------------------- 89
            Y   G FE  +R+  +ME+     DL ++ G++                           
Sbjct: 701  YSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPN 760

Query: 90   -------LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
                   LRACA L+ L+ GKE+HC  IR    +DV + +AL+D+Y+K   +  AH++F 
Sbjct: 761  SASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFR 820

Query: 143  QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            ++  + L +WN MI GFA  G G+EA+ +F++M + G  PD ++F  +LSAC + GLI  
Sbjct: 821  RIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGE 880

Query: 203  GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
            G K+F SM  +YRI P++EHY CMVDLLGRAG L+EA  LI     + D+++W  LLG+C
Sbjct: 881  GWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSC 940

Query: 263  TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
               +N   AE  AK + +L+P+   +Y+L+ N+Y    RW D   +R LM  +GV+    
Sbjct: 941  RIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQV 1000

Query: 323  KSWIEANSKLN 333
             SWI+ N +++
Sbjct: 1001 WSWIQINQRVH 1011



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 126/247 (51%), Gaps = 14/247 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G E+H  +I  G   +V +  +L++ YG+C  ++++++VF +M    ++  +  +    Q
Sbjct: 542 GMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQ 601

Query: 65  TGDFESVIRIFREMEEIDLFSF-----GIVLR----ACAGLAALRLGKEVHCQYIRRSGC 115
           +   +  + +FR+M+    FSF       ++R    + + L  L +GKE H   +R    
Sbjct: 602 SEKLQKGVELFRKMQ----FSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFD 657

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + ++L+D+Y K   +  A  +F  M  RN+  WNS++SG++  G  E+ALR+ + M
Sbjct: 658 CDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM 717

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G KPD V++ G++S  +  G        FA M +E  + P      C++       L
Sbjct: 718 EKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQE-GVMPNSASITCLLRACASLSL 776

Query: 236 LEEAETL 242
           L++ + +
Sbjct: 777 LQKGKEI 783



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 98/207 (47%), Gaps = 7/207 (3%)

Query: 6   KEVHAKVITLGLCGNV-VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY-C 63
           K +HA++I L    N      +L+  Y   G    +  VF   L +N +  ++ ++ +  
Sbjct: 440 KMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKS 499

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             G    V+ +F+E+       D   + + L+ C  +  + LG E+H   I+R    DV 
Sbjct: 500 SAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVY 559

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +  AL++ Y +C  ++ A+Q+F +MP    + WN  I    Q+ + ++ + +F  M    
Sbjct: 560 LRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSF 619

Query: 180 TKPDHVSFIGVLSAC-SHMGLIDRGRK 205
            K +  + + VL A  S +G ++ G++
Sbjct: 620 LKAETATIVRVLQASISELGFLNMGKE 646


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 209/335 (62%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +H  V   GL  +  V ++LVDMYGKC  ++++  +FDKM +++ V+ + ++ G
Sbjct: 248 LQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGG 307

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + G+    + +F +M E     D  +   V+ ACA L A+   + +   YI+R   + 
Sbjct: 308 YAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTID-DYIQRKKFQL 366

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DVI+ +A++D++AKCGCV+ A +IF +M  +N+I+W++MI+ +  +G+G +AL +F  M 
Sbjct: 367 DVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 426

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+ ++ + +L ACSH GL++ G + F+ M ++Y ++  ++HY C+VDLLGRAG L
Sbjct: 427 RSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRL 486

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA  LIE+     D  LW   LGAC T ++  +AE+ A  ++EL+P     Y+LL N+Y
Sbjct: 487 DEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIY 546

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
              GRW D  K R LM    +KK+PG +WIE ++K
Sbjct: 547 ANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNK 581



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 181/346 (52%), Gaps = 27/346 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +H  V   GL  +  V ++LVDMY KC  ++++  +FDKM +++ V+ + ++ G
Sbjct: 46  LQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGG 105

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + G     + +F +M E     D  +   V+ ACA L A+   + +   YI+R   + 
Sbjct: 106 YAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIID-DYIQRKKFQL 164

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DVI+ +A++D+YAKCGCV+ A +IF +M  +N+I+W++MI+ +  +G+G +AL +F  M 
Sbjct: 165 DVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMML 224

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGR--KHFASMTKEYRIKPKIEHYNC--MVDLLGR 232
             G  PD ++   +L ACS +  +  GR   H       Y+    ++H+ C  +VD+ G+
Sbjct: 225 SSGMLPDKITLASLLYACSDLKNLQMGRLIHHIV-----YKFGLDLDHFVCAALVDMYGK 279

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
              +E+A  L +    R D   W V++G      NA+ +  +  K+ E  + PD     V
Sbjct: 280 CREIEDARFLFDKMPER-DLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPD----KV 334

Query: 291 LLDNVYRAVGRWNDAFKIRTLMKYSGVKKMP-----GKSWIEANSK 331
            +  V  A  +     K RT+  Y   KK       G + I+ ++K
Sbjct: 335 AMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAK 380



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 109/208 (52%), Gaps = 6/208 (2%)

Query: 58  LLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           ++ G+ + GD+ +    FRE+       D ++   V+RAC  L  L++G+ +H    +  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D  + +ALVD+Y KC  ++ A  +F +M  R+L+TW  MI G+A+ G+  E+L +F+
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M E G  PD V+ + V+ AC+ +G + + R       +  + +  +     M+D+  + 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARI-IDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGA 261
           G +E A  + +  + ++  S W  ++ A
Sbjct: 180 GCVESAREIFDRMEEKNVIS-WSAMIAA 206


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 209/340 (61%), Gaps = 7/340 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK +HA ++  G   ++ + ++LVDMYGKCG +  +  +FD M  K+ ++ +A++  
Sbjct: 248 VQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISA 307

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y Q    +   ++F +M +     +  +   +L  CA   AL +GK  H  YI + G + 
Sbjct: 308 YAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHA-YIDKQGVEV 366

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DVI+++AL+D+YAKCG +  A ++F +   R++ TWN M++G+  +G GE+AL++F +M 
Sbjct: 367 DVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEME 426

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+ ++FIG L ACSH GL+  G+  F  M  ++ + PK+EHY CMVDLLGRAGLL
Sbjct: 427 TLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLL 486

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA  +IE+     + ++W  +L AC   +N+++ E  A++++ L+P      VL+ N+Y
Sbjct: 487 DEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIY 546

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            A  RWND   +R  +K +G+KK PG S IE N  L HD 
Sbjct: 547 AAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNG-LVHDF 585



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 143/284 (50%), Gaps = 28/284 (9%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSS------ 56
           + GKE+H   +  GL  +V V ++L+ MY +CG +  +  +FDKM +++ VS S      
Sbjct: 126 RMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAY 185

Query: 57  ----------------ALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRA----CAGL 96
                           A++ GY +  D E   R+F  M E ++F   I + +    C  +
Sbjct: 186 ITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFV 245

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
            A++LGK +H   +R      + + +ALVD+Y KCG +  A  IF  M  ++++TW +MI
Sbjct: 246 GAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMI 305

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216
           S +AQ    + A ++F  M + G +P+ ++ + +LS C+  G +D G+   A + K+  +
Sbjct: 306 SAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQ-GV 364

Query: 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +  +     ++D+  + G +  A+ L   A  R D   W V++ 
Sbjct: 365 EVDVILKTALIDMYAKCGDISGAQRLFSEAIDR-DICTWNVMMA 407



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 98/204 (48%), Gaps = 24/204 (11%)

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E+D F    VL+AC+ ++  R+GKE+H   ++     DV + +AL+ +Y++CG +  A  
Sbjct: 106 EVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARL 165

Query: 140 IFLQMPVRNLITWNSMIS-------GFAQN---------------GRGEEALRIFDDMTE 177
           +F +M  R++++W++MI        GF+Q                   EE  R+F  M E
Sbjct: 166 LFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIE 225

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+ ++ + ++ +C  +G +  G++  A + +       +     +VD+ G+ G + 
Sbjct: 226 ENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRN-GFGMSLALATALVDMYGKCGEIR 284

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A  + ++   + D   W  ++ A
Sbjct: 285 SARAIFDSMKNK-DVMTWTAMISA 307


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 189/307 (61%), Gaps = 4/307 (1%)

Query: 31  YGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSF 86
           +G+ G+VD +  VFD+M +++  + SA+++ Y Q       +  FREM  I    +  S 
Sbjct: 277 FGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSV 336

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             +L  CA LA L  G+EVH   +RRS   D+   SAL+ +Y KCG +D A ++F     
Sbjct: 337 ISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEP 396

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           ++++ WNSMI+G+AQ+G GEEAL IFDDM   G  PD +++IG L+ACS+ G +  GR  
Sbjct: 397 KDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDI 456

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SM  +  IKP +EHY CMVDLLGRAGL++EA  LI+      D+ +W  L+GAC   +
Sbjct: 457 FNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHK 516

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           NA +AE  AKK++EL+P     YVLL ++Y + GRW DA  +R  +    + K  G SWI
Sbjct: 517 NAEIAEISAKKLLELEPGNAGPYVLLSHIYTSSGRWEDASNMRKFISSRHLNKSLGCSWI 576

Query: 327 EANSKLN 333
           E + +++
Sbjct: 577 EYDKRVH 583



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 122/267 (45%), Gaps = 55/267 (20%)

Query: 10  AKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFE 69
           A + T+    +VV  +SL+  Y + GL+ ++ ++F +M ++N +S + LL G+   G  +
Sbjct: 101 AALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVD 160

Query: 70  SVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129
              ++F EM                                     KDV+  +A++  Y 
Sbjct: 161 EARKLFDEMP-----------------------------------AKDVVAWTAMLSGYC 185

Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
           + G VD A  +F +MP RN+++W +M+SG+AQNG+   A ++F+ M E     + VS+  
Sbjct: 186 QVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPER----NEVSWTA 241

Query: 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
           +L      G I+   + F +M         +   N M+   G+ G+++ A+++ +   C 
Sbjct: 242 MLFGYIQAGRIEDAEELFNAMPDH-----PLAACNGMIVGFGQQGMVDAAKSVFDRM-CE 295

Query: 250 HDSSLW----------EVLLGACTTFR 266
            D   W          E L+ A +TFR
Sbjct: 296 RDDGTWSAIIKAYEQNEFLMEALSTFR 322



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y + G VDE+  +FD+M K+N VS +A++ GY Q G      ++F  M 
Sbjct: 173 DVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMP 232

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR--SGCKDVIIESALVDLYAKCGCVDFA 137
           E +  S+  +L        +   +E+         + C  +I+       + + G VD A
Sbjct: 233 ERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVG------FGQQGMVDAA 286

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
             +F +M  R+  TW+++I  + QN    EAL  F +M   G +P++ S I +L+ C+ +
Sbjct: 287 KSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAAL 346

Query: 198 GLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            ++D GR+ H A + + + +   I   + ++ +  + G L++A+ +    + + D  +W 
Sbjct: 347 AVLDYGREVHGAMLRRSFDM--DIYAVSALITMYIKCGNLDKAKRVFHMFEPK-DVVMWN 403

Query: 257 VLL 259
            ++
Sbjct: 404 SMI 406



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 112/251 (44%), Gaps = 33/251 (13%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80
           VV  ++ +    + G ++ +   F+ M  + + S +ALL GY +    ++ +R+F  M  
Sbjct: 17  VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPT 76

Query: 81  IDLFSF-----GIVLR------ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129
            DL S+     G+ LR      A A LA +                  V+  ++L+  Y 
Sbjct: 77  RDLASYNALISGLSLRRHTLPDAAAALATIPY-------------PPSVVSFTSLLRGYV 123

Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
           + G +  A Q+F QMP RN I++  ++ GF   GR +EA ++FD+M       D V++  
Sbjct: 124 RHGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEM----PAKDVVAWTA 179

Query: 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
           +LS    +G +D  R  F  M K       +  +  MV    + G +  A  L E    R
Sbjct: 180 MLSGYCQVGRVDEARTLFDEMPKR-----NVVSWTAMVSGYAQNGQVNLARKLFEVMPER 234

Query: 250 HDSSLWEVLLG 260
           ++ S   +L G
Sbjct: 235 NEVSWTAMLFG 245



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+EVH  ++      ++   S+L+ MY KCG +D++ RVF     K+ V  ++++ G
Sbjct: 349 LDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITG 408

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV----LRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + IF +M    +   GI     L AC+    ++ G+++      +SG K 
Sbjct: 409 YAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKP 468

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            +   A +VDL  + G VD A  +   MPV  + + W +++
Sbjct: 469 GLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALM 509



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 22/209 (10%)

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
            +++  S    V+  +A +   A+ G ++ A   F  MP+R   ++N++++G+ +N   +
Sbjct: 6   VRFLPSSSTPAVVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPD 65

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF----ASMTKEYRIKPKIEH 222
            ALR+F  M       D  S+  ++S  S        R+H     A+        P +  
Sbjct: 66  AALRVFHRMPTR----DLASYNALISGLSL-------RRHTLPDAAAALATIPYPPSVVS 114

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
           +  ++    R GLL +A  L      R+  S + VLLG    F +A   +   K   E+ 
Sbjct: 115 FTSLLRGYVRHGLLADAIQLFRQMPERNHIS-YTVLLGG---FLDAGRVDEARKLFDEMP 170

Query: 283 PDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311
               +++  + + Y  VGR ++A   RTL
Sbjct: 171 AKDVVAWTAMLSGYCQVGRVDEA---RTL 196


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 135/331 (40%), Positives = 204/331 (61%), Gaps = 6/331 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  K+VH  +   G+  + V+ S+L+D+Y KCG    +  +F+KM +KN    + ++ G
Sbjct: 254 LETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMING 313

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           + +  D+E  + +F EM+    + D  +   +L AC  L AL LGK +H  YI +   + 
Sbjct: 314 HVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHV-YIEKEKIEV 372

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV + +ALVD+YAKCG ++ A ++F +MP ++++TW ++I G A  G+G +AL +F +M 
Sbjct: 373 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 432

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               KPD ++F+GVL+ACSH GL++ G  +F SM  +Y I+P IEHY CMVD+LGRAG +
Sbjct: 433 MSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRI 492

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE LI+N     D  +   LL AC    N  VAER A++++EL P    +YVLL N+Y
Sbjct: 493 AEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIY 552

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            ++  W  A K+R LM    +KK PG S IE
Sbjct: 553 SSMKNWEAAKKMRELMVERNIKKPPGCSAIE 583



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 105/203 (51%), Gaps = 15/203 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDE-----SHRVFDKMLKKNSVSSS 56
           + Q K++HA+++   L  +    S +V     C L D      +  VF+++    + + +
Sbjct: 53  MSQLKQIHAQMLRTCLFVDPFSASKIVAF---CALHDSGSLPYARLVFNQIPNPTTFTCN 109

Query: 57  ALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           ++++GY         I  ++ M     + D F+F  + ++C  L     GK++HC   + 
Sbjct: 110 SIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKL 166

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               D  I++ L+++Y+ CGC+  A ++F +M  +++++W +MI  +AQ     EA+++F
Sbjct: 167 GFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLF 226

Query: 173 DDMTEGGTKPDHVSFIGVLSACS 195
             M     KP+ ++ + VL+AC+
Sbjct: 227 RRMEIASVKPNEITLVNVLTACA 249


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 211/361 (58%), Gaps = 35/361 (9%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS------------ 52
           GK+VHA +   G   N+ +E++L+DMY KC  + ++H+VFD M+++++            
Sbjct: 138 GKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVG 197

Query: 53  -------------------VSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
                              VS +A++ GY + G +   + +FR+M+    E D  S   V
Sbjct: 198 VGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISV 257

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L ACA L AL +GK +H    R    +   I +AL+++Y+KCGC+  A+Q+F QM   ++
Sbjct: 258 LPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDV 317

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           I+W++MI G A +G+  EA+ +F  M +   +P+ ++F+G+LSAC+H G  + G  +F S
Sbjct: 318 ISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDS 377

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           M+K+Y I+P++EHY C+VD+LGRAG L +A  +IE    + DS +W  LL +C T  N  
Sbjct: 378 MSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLD 437

Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           +A    + + EL+PD   +YVLL N+Y  + +W+   ++R L+K   +KK PG S I+ N
Sbjct: 438 IAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLIDIN 497

Query: 330 S 330
           +
Sbjct: 498 N 498



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 155/344 (45%), Gaps = 45/344 (13%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K +HA VI   L  +  + + +VD+  K   +  +  +F ++ + N    +A+++ +   
Sbjct: 31  KSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHN 90

Query: 66  GDFESVIRIFREMEEI-----------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
             +   I  ++EM  +           D F+F  V+++C+GL    LGK+VH    +   
Sbjct: 91  KVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGP 150

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQ------------------------------- 143
             ++ +E+AL+D+Y KC  +  AH++F                                 
Sbjct: 151 KSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDL 210

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP R +++W +MISG+ + G   +AL +F  M   G +PD +S I VL AC+ +G ++ G
Sbjct: 211 MPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVG 270

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           +       +   ++ K    N ++++  + G + +A  L +    + D   W  ++G   
Sbjct: 271 KWIHMYCDRNGLLR-KTSICNALMEMYSKCGCIGQAYQLFDQMS-KGDVISWSTMIGGLA 328

Query: 264 TFRNAHVAERVAKKIMELKPDCH-LSYVLLDNVYRAVGRWNDAF 306
               A  A  + K++ + K + + ++++ L +     G WN+  
Sbjct: 329 NHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGL 372



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 22/170 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H      GL     + ++L++MY KCG + +++++FD+M K + +S S ++ G
Sbjct: 267 LEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGG 326

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACA-------GLAAL-RLGKEVHCQY 109
               G     I +F+ M++  +   GI    +L ACA       GLA    + K+ H + 
Sbjct: 327 LANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEP 386

Query: 110 -IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMIS 157
            +   GC        LVD+  + G +  A  +  +MP++ +   W S++S
Sbjct: 387 EVEHYGC--------LVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLS 428



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 27/255 (10%)

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           RE+E      F  +L+ C  +  L   K +H   I+ S  +   + + +VD+  K   + 
Sbjct: 11  RELENF----FVPILQNCKNIVEL---KSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLG 63

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRG-------EEALRIFDDMTEGGTKPDHVSFI 188
           +A  +F Q+   N   +N+MI     N          +E LR+ D  +E    PD  +F 
Sbjct: 64  YASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFP 123

Query: 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADC 248
            V+ +CS +   + G++  A + K +  K  I   N ++D+  +   L +A  + +    
Sbjct: 124 FVIKSCSGLVCYNLGKQVHAHLCK-FGPKSNITMENALIDMYTKCASLLDAHKVFDGM-V 181

Query: 249 RHDSSLWEVLLGACTTFRNAHVA---ERVAKKIMELKP-DCHLSYVLLDNVYRAVGRWND 304
             D+  W  ++       + HV     R A  + +L P    +S+  + + Y  +G + D
Sbjct: 182 ERDAISWNSII-------SGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYAD 234

Query: 305 AFKIRTLMKYSGVKK 319
           A  +   M+  GV+ 
Sbjct: 235 ALYVFRQMQIVGVEP 249


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 199/337 (59%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++HA V  LGL   V V + LVD Y KC   + + R F ++ + N VS SA++ G
Sbjct: 299 LRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISG 358

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           YCQ   FE  ++ F+ +       ++ F++  + +AC+ LA   +G +VH   I+RS   
Sbjct: 359 YCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIG 418

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
               ESAL+ +Y+KCGC+D AH++F  M   +++ W + ISG A  G   EALR+F+ M 
Sbjct: 419 SQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMV 478

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+ V+FI VL+ACSH GL+++G+ +  +M ++Y + P I+HY+CM+D+  R+GLL
Sbjct: 479 SCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLL 538

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA   ++N     D+  W+  L  C T +N  + +   +++ +L P+    YVL  N+Y
Sbjct: 539 DEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAGYVLPFNLY 598

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              G+W +A ++  LM    +KK    SWI+   K++
Sbjct: 599 TWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIH 635



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 151/290 (52%), Gaps = 9/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++HA VI  GLC N  +E+ +V+MY KCG +  + RVFD+M  K  V+ + L+ G
Sbjct: 198 LDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVG 257

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +++F     E  E D F F +VL+ACA L  LR GK++H    +     +
Sbjct: 258 YTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECE 317

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           V + + LVD Y KC   + A + F ++   N ++W+++ISG+ Q  + EEA++ F  + +
Sbjct: 318 VSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRS 377

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +     +  ++  +  ACS +   + G +  A   K   I  +    + ++ +  + G L
Sbjct: 378 KNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGE-SALITMYSKCGCL 436

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           ++A  + E+ D   D   W   +     + NA  A R+ +K++   +KP+
Sbjct: 437 DDAHEVFESMD-NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPN 485



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 118/215 (54%), Gaps = 4/215 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H ++       +V++++ ++ MY +CG ++++ ++FD+M   N+VS + ++  
Sbjct: 97  LSHGRLLHNRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISA 156

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  +  + +F  M    ++     +  +L++     AL +G+++H   IR   C +
Sbjct: 157 YAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSN 216

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             IE+ +V++Y KCG +  A ++F QM V+  + W  ++ G+ Q GR  +AL++F D+  
Sbjct: 217 ASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLIT 276

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            G + D   F  VL AC+ +  +  G++  A + K
Sbjct: 277 EGVEWDSFVFSVVLKACASLEELRFGKQIHACVAK 311



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 4/144 (2%)

Query: 66  GDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G        F+EM++    + L+S+  +  AC  L +L  G+ +H +         V+++
Sbjct: 60  GKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIENPSVLLQ 119

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + ++ +Y +CG ++ A ++F +M   N ++  +MIS +A+ G  ++A+ +F  M E G K
Sbjct: 120 NCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDK 179

Query: 182 PDHVSFIGVLSACSHMGLIDRGRK 205
           P    +  +L +  +   +D GR+
Sbjct: 180 PPSSMYTTLLKSLVNPRALDIGRQ 203


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 200/318 (62%), Gaps = 5/318 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NVV  ++++  Y +   VDE+  +F +M +KNS+S + ++ GY + G  +   ++  +M 
Sbjct: 150 NVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMP 209

Query: 80  ---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVIIESALVDLYAKCGCVD 135
              + D  +F   L +CA LAAL++GK++H Q + +SG   D+ + +AL+ +YAKCG + 
Sbjct: 210 YRNKPDQSTFACGLSSCAHLAALQVGKQLH-QLVMKSGYATDLFVSNALITMYAKCGSIS 268

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A  +F  +   ++++WNS+I+ +A NG G EAL++F  M   G  PD V+F+G+LSACS
Sbjct: 269 SAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACS 328

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H+GLID+G K F  M + Y I+P  EHY CMVDLLGRAG LEEA  L+       ++ +W
Sbjct: 329 HVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIW 388

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGAC    N  +A+  A+K++E +P    +YVLL N+    GRW++  ++R LMK  
Sbjct: 389 GALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEK 448

Query: 316 GVKKMPGKSWIEANSKLN 333
           G +K PG SWIE  ++++
Sbjct: 449 GAEKQPGWSWIELQNRVH 466



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 131/290 (45%), Gaps = 38/290 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  +++V  Y K    DE+ R+FD M  K+ VS +++L GY + G+    ++ F EM 
Sbjct: 26  NPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMA 85

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E D+ S+ +++     +  L    E    +  +    + +    ++  +A+ G +  A +
Sbjct: 86  ERDVVSWNLMVDGFVEVGDLNSSWE----FFEKIPNPNTVSWVTMLCGFARFGKIAEARR 141

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT------------------- 180
           +F QMP+RN++ WN+MI+ + QN   +EA+ +F +M E  +                   
Sbjct: 142 LFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEA 201

Query: 181 -----------KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVD 228
                      KPD  +F   LS+C+H+  +  G++ H   M   Y     +   N ++ 
Sbjct: 202 RQLLNQMPYRNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVS--NALIT 259

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           +  + G +  AE L ++ D   D   W  L+ A     N   A ++  K+
Sbjct: 260 MYAKCGSISSAELLFKDID-HFDVVSWNSLIAAYALNGNGREALKLFHKM 308



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 13/193 (6%)

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +A+V  YAK    D A ++F  MP ++L++WNSM++G+ +NG     L+ F++M E    
Sbjct: 31  NAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAER--- 87

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D VS+  ++     +G ++   + F  +       P    +  M+    R G + EA  
Sbjct: 88  -DVVSWNLMVDGFVEVGDLNSSWEFFEKIP-----NPNTVSWVTMLCGFARFGKIAEARR 141

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L +    R+  + W  ++ A    +N HV E ++   ME+     +S+  + N Y  +G+
Sbjct: 142 LFDQMPIRNVVA-WNAMIAAYV--QNCHVDEAIS-LFMEMPEKNSISWTTVINGYVRMGK 197

Query: 302 WNDAFKIRTLMKY 314
            ++A ++   M Y
Sbjct: 198 LDEARQLLNQMPY 210



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H  V+  G   ++ V ++L+ MY KCG +  +  +F  +   + VS ++L+  
Sbjct: 232 LQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAA 291

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G+    +++F +ME      D  +F  +L AC+ +  +  G ++    ++    + 
Sbjct: 292 YALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEP 351

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEA 168
           +    A +VDL  + G ++ A Q+   M +  N   W +++     +G  E A
Sbjct: 352 LAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELA 404


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 199/333 (59%), Gaps = 6/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA+++ LGL    ++ ++L+DMY KCG++D +   F    +K+++S +AL+ GY Q
Sbjct: 356 GKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQ 415

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  +++F +M       D  +F  +++A + LA + LG+++H  Y+ RSG K  + 
Sbjct: 416 NGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLH-SYLIRSGYKSSVF 474

Query: 121 E-SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
             S LVD+YAKCGC+D A + F +MP RN I+WN++IS +A  G  + A+++F+ M   G
Sbjct: 475 SGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCG 534

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PD V+F+ VL+ACSH GL D   K+F  M  +Y I P  EHY C++D LGR G   + 
Sbjct: 535 FNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQV 594

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
           + ++     + D  +W  +L +C    N  +A   A K+  ++P     YV+L N+Y   
Sbjct: 595 QKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARA 654

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           G+W DA  ++ +M+  GV+K  G SW+E   K+
Sbjct: 655 GQWEDAACVKKIMRDRGVRKESGYSWVEIKQKI 687



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 155/286 (54%), Gaps = 8/286 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VHA V+      NV V +SL+D Y KC  +D+  R+FD+M ++++VS + ++  Y  
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW 314

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                +V+R+FREM+++     +  +  +L     L  + +GK++H Q +      + ++
Sbjct: 315 NQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLL 374

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+Y+KCG +D A   F     ++ I+W ++I+G+ QNG+ EEAL++F DM   G 
Sbjct: 375 GNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGL 434

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD  +F  ++ A S + +I  GR+  + + +    K  +   + +VD+  + G L+EA 
Sbjct: 435 RPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEAL 493

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
              +    R+  S W  ++ A   +  A  A ++ + ++     PD
Sbjct: 494 RTFDEMPERNSIS-WNAVISAYAHYGEAKNAIKMFEGMLHCGFNPD 538



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 128/244 (52%), Gaps = 5/244 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
             +H   I  GL  +V V ++L+D Y K GL+  + RVF +M  K++V+ +A++ G  + 
Sbjct: 155 PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKE 214

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G     +++F  M    +    F+F  +L   AG+A L LG +VH   +R +   +V + 
Sbjct: 215 GLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVN 274

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++L+D Y+KC C+D   ++F +MP R+ +++N +I+ +A N      LR+F +M + G  
Sbjct: 275 NSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFD 334

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
              + +  +LS    +  +  G++  A +         +   N ++D+  + G+L+ A++
Sbjct: 335 RQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKS 393

Query: 242 LIEN 245
              N
Sbjct: 394 NFSN 397



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 122/280 (43%), Gaps = 32/280 (11%)

Query: 35  GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACA 94
           G +  +  +FD+M  KN  S + +L  Y  +GD  +   +F      +  ++ I++RA A
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 95  -------GLAALR--LGKEV------HCQYIRRSGC---------------KDVIIESAL 124
                   L+  R  LG+ V          +   GC                 V + + L
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 176

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D Y K G +  A ++FL+M  ++ +T+N+M+ G ++ G   +AL++F  M   G    H
Sbjct: 177 LDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATH 236

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
            +F  +L+  + M  +  G +  A + +   +   +   N ++D   +   L++   L +
Sbjct: 237 FTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL-NVFVNNSLLDFYSKCDCLDDMRRLFD 295

Query: 245 NADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
               R D+  + V++ A    + A    R+ +++ +L  D
Sbjct: 296 EMPER-DNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFD 334


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 125/315 (39%), Positives = 197/315 (62%), Gaps = 4/315 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VVVE++++  Y K G V+ + R+F +M  KN V+ ++++ GY +    E  +++F+ M 
Sbjct: 228 SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMI 287

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           E     +  S   VL  C+ L+AL LG+++H    +    KD    ++L+ +Y KCG +D
Sbjct: 288 ESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLD 347

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A ++FL+MP +++ITWN+MISG+AQ+G G +AL +FD M  G  KPD ++F+ V+ AC+
Sbjct: 348 SAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACN 407

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H G +D G ++F SM KE+ I+ K  HY C++DLLGRAG L+EA +LI+       ++++
Sbjct: 408 HAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIY 467

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGAC   +N  +AE  A+ ++ L P     YV L N+Y A  +W+   K+R +MK  
Sbjct: 468 GTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEH 527

Query: 316 GVKKMPGKSWIEANS 330
            V K+PG SWIE  S
Sbjct: 528 NVVKIPGYSWIEIKS 542



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 91/162 (56%), Gaps = 4/162 (2%)

Query: 44  FDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGK 103
           F+KM  K+  S + L+ G+ Q G  +    +F  M E +  S+  ++        L   +
Sbjct: 159 FNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAE 218

Query: 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           E++    +  G K V++E+A++  Y K G V+ A +IF +M V+NL+TWNSMI+G+ +N 
Sbjct: 219 ELY----KNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENC 274

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           R E+ L++F  M E   +P+ +S   VL  CS++  +  GR+
Sbjct: 275 RAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQ 316



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ-TGDFESVIRIFREME 79
           V +  ++      C L + +  VF+KM  + +V+ + +L GY +  G  +    +F ++ 
Sbjct: 74  VSLNKTIASFVRACDL-ESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIP 132

Query: 80  EIDLFSFGIVLRACAGLAALR-LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
           E D  S+ I+L     +  LR  G +    +  +   KD+   + L+  +A+ G +  A 
Sbjct: 133 EPDSVSYNIML-----VCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAF 187

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +F  MP +N ++W++MISG+ ++G  E A  ++ ++
Sbjct: 188 DLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNV 224



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 15/154 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H  V    L  +    +SL+ MY KCG +D + ++F +M +K+ ++ +A++ G
Sbjct: 311 LPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISG 370

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F +M     + D  +F  V+ AC     + LG     QY  +S  K+
Sbjct: 371 YAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLG----VQYF-KSMKKE 425

Query: 118 VIIE------SALVDLYAKCGCVDFAHQIFLQMP 145
             IE      + ++DL  + G +D A  +  +MP
Sbjct: 426 FGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMP 459



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 11/163 (6%)

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-NGRGEEALRIFDDM 175
           DV+  +  +  + +   ++ A  +F +M VR  +TWN+M+SG+ +  G+ +EA  +FD +
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E    PD VS+  ++  C    L   G K   +   +  +K  I  +N ++    + G 
Sbjct: 132 PE----PDSVSY-NIMLVCY---LRSYGVKAALAFFNKMPVK-DIASWNTLISGFAQNGQ 182

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           +++A  L      ++  S W  ++       +   AE + K +
Sbjct: 183 MQKAFDLFSVMPEKNGVS-WSAMISGYVEHGDLEAAEELYKNV 224


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 201/361 (55%), Gaps = 36/361 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  +HA  + +G   N+ V SSL+DMY KC     + RVF+ + +KN+V  ++L+ G
Sbjct: 395 LRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISG 454

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI--------------------------------- 88
           Y   G       +F +M   +  S+                                   
Sbjct: 455 YSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITL 514

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA L +L +G+ VH + ++     ++ + +AL D+YAK G +D + ++F QMP 
Sbjct: 515 SSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPE 574

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +N ITW +M+ G A+NG  EE++ +F+DM E G  P+  +F+ +L ACSH GL+++   +
Sbjct: 575 KNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHY 634

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F +M + + I PK +HY CMVD+L RAG L EAE L+       D+S W  LL AC+T+R
Sbjct: 635 FETM-QAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYR 693

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  + ER AKK+ EL+ D    YVLL N+Y + G+W DA + R LM+ + +KK  G SW+
Sbjct: 694 NKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWL 753

Query: 327 E 327
           +
Sbjct: 754 Q 754



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 128/289 (44%), Gaps = 52/289 (17%)

Query: 2   LKQGKEVHAKVITLGL----------------CGNVVVESSLVDMYGKCGLVDESHRVFD 45
            ++  EVH  +ITL L                  +VV  ++L+D+Y   G +  + RV D
Sbjct: 278 FEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLD 337

Query: 46  KMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRL 101
            M  +N VS   L+  + Q GD    ++++ +M       ++  F  VL ACA L  LR 
Sbjct: 338 AMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRG 397

Query: 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
           G  +H   ++     ++ + S+L+D+Y KC    +A ++F  +P +N + WNS+ISG++ 
Sbjct: 398 GTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSW 457

Query: 162 NGRGEE-------------------------------ALRIFDDMTEGGTKPDHVSFIGV 190
           NG+  E                               AL  F  M   G  P  ++   V
Sbjct: 458 NGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSV 517

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           L AC+++  ++ GR   A + K   I+  I     + D+  ++G L+ +
Sbjct: 518 LLACANLCSLEMGRMVHAEIVK-LGIEDNIFMGTALSDMYAKSGDLDSS 565



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 110/248 (44%), Gaps = 37/248 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVE-SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +K G    A+ +  G+    VV  +++VD   K G V ++  ++++    +    +A++ 
Sbjct: 160 VKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMIS 219

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAG-----LAALRLGKEVHCQYIR 111
           G+ +    +    +FR+M       ++ +   V++AC G     LA   +G  V C    
Sbjct: 220 GFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFE 279

Query: 112 RS---------------------------GCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +S                             +DV+  +AL+D+YA  G +  A ++   M
Sbjct: 280 KSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAM 339

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P RN ++W ++I+   Q G   EAL+++  M   G +P+   F  VLSAC+ +  +  G 
Sbjct: 340 PARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGT 399

Query: 205 KHFASMTK 212
           +  A+  K
Sbjct: 400 RIHANALK 407



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 106/270 (39%), Gaps = 39/270 (14%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSA---LLQGYCQ 64
           +HA     GL  +  V S+L+  Y       +  + F   +  ++ SS     ++  + +
Sbjct: 102 LHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFRDCVAADAASSFTYDFMVSEHVK 161

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
            GD  S  R+F  M E  + S+  ++ A                 ++R   +D       
Sbjct: 162 AGDIASARRLFYGMPEKSVVSYTTMVDA----------------LMKRGSVRDA------ 199

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           V+LY +C             P+ ++  + +MISGF +N   ++A  +F  M     +P+ 
Sbjct: 200 VELYERC-------------PLHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNV 246

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           V+ I V+ AC   G  D          K    +  IE +N ++ L  R G    A  + +
Sbjct: 247 VTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFD 306

Query: 245 NADCRHDSSLWEVLLGACTTFRNAHVAERV 274
           + + R D   W  LL       + + A RV
Sbjct: 307 DMEVR-DVVSWTALLDVYADLGDLYGARRV 335


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 126/336 (37%), Positives = 210/336 (62%), Gaps = 8/336 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G++VH+ +   G   N+ + ++L+D+Y KCG ++ +  +F+ +  K+ +S + L+ G
Sbjct: 239 IELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGG 298

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYI--RRSGC 115
           Y     ++  + +F+EM    E  +  +   +L ACA L A+ +G+ +H  YI  R  G 
Sbjct: 299 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV-YIDKRLKGV 357

Query: 116 KDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            +   + ++L+D+YAKCG ++ AHQ+F  +  ++L +WN+MI GFA +GR + +  IF  
Sbjct: 358 ANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSR 417

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M + G +PD ++F+G+LSACSH G++D GR  F SMT++Y++ PK+EHY CM+DLLG +G
Sbjct: 418 MRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSG 477

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
           L +EAE +I   +   D  +W  LL AC    N  + E  A+ +++++P+   SYVLL N
Sbjct: 478 LFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSN 537

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           +Y   GRWN+    R L+   G+KK+PG S IE +S
Sbjct: 538 IYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDS 573



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 149/304 (49%), Gaps = 48/304 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL------VDESHRVFDKMLKKNSVSS 55
           L+  + +HA++I  GL       S L++    C L      +  +  VF+ + + N +  
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEF---CILSPHFDGLPYAISVFETIQEPNLLIW 59

Query: 56  SALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIR 111
           + + +G+  + D  S ++++  M  + L    ++F  +L++CA   A + G+++H  ++ 
Sbjct: 60  NTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIH-GHVL 118

Query: 112 RSGC--------------------------------KDVIIESALVDLYAKCGCVDFAHQ 139
           + GC                                +DV+  +AL+  YA  G ++ A +
Sbjct: 119 KLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQK 178

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F ++PV+++++WN+MISG+A+ G  +EAL +F DM +   +PD  + + V+SAC+  G 
Sbjct: 179 MFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 238

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           I+ GR+   S   ++     ++  N ++DL  + G LE A  L E    + D   W  L+
Sbjct: 239 IELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYK-DVISWNTLI 296

Query: 260 GACT 263
           G  T
Sbjct: 297 GGYT 300


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 207/335 (61%), Gaps = 5/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++GK++H  V  LGL  +V V++SL++MYG+CG ++ S  VF+K+  K++ S S++   
Sbjct: 149 IREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSA 208

Query: 62  YCQTGDFESVIRIFREM-EEIDLFS--FGIV--LRACAGLAALRLGKEVHCQYIRRSGCK 116
               G +   + +FREM  E +L +   G+V  L ACA   AL LG  +H   +R     
Sbjct: 209 CVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISEL 268

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++I++++LVD+Y KCGC+D A  IF +M  RN +T+++MISGFA +G GE ALR+F +M 
Sbjct: 269 NIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMI 328

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +PDHV ++ +L+ACSH GL+  GR+ F  M KE +++P  EHY C+VDLLGRAGLL
Sbjct: 329 KEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLL 388

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA   I++     +  +W   L  C   +N  + +  A+++++L       Y+L+ N+Y
Sbjct: 389 EEALETIQSIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPGDYLLISNMY 448

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
                W+D  + RT +   G+K+ PG S ++   K
Sbjct: 449 SQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKGK 483



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 119/248 (47%), Gaps = 14/248 (5%)

Query: 57  ALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
            +++GY     FE  +  + EM E     D F++  +L+AC  L A+R GK++H    + 
Sbjct: 103 TMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIREGKQIHGHVFKL 162

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               DV ++++L+++Y +CG ++ +  +F ++  ++  +W+SM S     G   E L +F
Sbjct: 163 GLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGMGMWSECLMLF 222

Query: 173 DDMT-EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK---EYRIKPKIEHYNCMVD 228
            +M  E   K +    +  LSAC++ G ++ G      + +   E  I  K      +VD
Sbjct: 223 REMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIVKTS----LVD 278

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHL 287
           +  + G ++ A  + +  + R++ +   ++ G              ++ I E L+PD H+
Sbjct: 279 MYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMIKEGLEPD-HV 337

Query: 288 SYVLLDNV 295
            YV L N 
Sbjct: 338 VYVSLLNA 345


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 119/331 (35%), Positives = 203/331 (61%), Gaps = 4/331 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++VH   +  G   ++ V +SL+D YGKC  V+++ R+F++    + VS ++++  Y Q 
Sbjct: 453 RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQY 512

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  E  +++F EM++++L    F    +L ACA L+A   GK++H   ++     D+   
Sbjct: 513 GQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAG 572

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++LV++YAKCG +D A + F ++  R +++W++MI G AQ+G G +AL++F+ M + G  
Sbjct: 573 NSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVS 632

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+H++ + VL AC+H GL+   + +F SM + +  KP  EHY CM+DLLGRAG + EA  
Sbjct: 633 PNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVE 692

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L+       ++S+W  LLGA    ++  +  R A+ +  L+P+   ++VLL N+Y + G+
Sbjct: 693 LVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGK 752

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           W +  ++R LM+ S VKK PG SWIE   K+
Sbjct: 753 WENVAEVRRLMRDSKVKKEPGMSWIEVKDKV 783



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 157/310 (50%), Gaps = 20/310 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++HA +   GL  +  + + L+++Y KC     + ++ D+  + + VS SAL+ G
Sbjct: 72  LRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISG 131

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +  F EM  + +    F+F  VL+AC+ +  LR+GK+VH   +      D
Sbjct: 132 YAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGD 191

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + LV +YAKC     + ++F ++P RN+++WN++ S + Q     EA+ +F +M  
Sbjct: 192 VFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVL 251

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE----HYNCMVDLLGRA 233
            G KP+  S   +++AC+  GL D  R     +   Y IK   +      N +VD+  + 
Sbjct: 252 SGIKPNEFSLSSMVNACT--GLRDSSR---GKIIHGYLIKLGYDWDPFSANALVDMYAKV 306

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           G L +A ++ E    + D   W  ++  C    +    E+  + + ++K   H S + +D
Sbjct: 307 GDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEH---HEQALELLGQMKRQLHSSLMKMD 362

Query: 294 ---NVYRAVG 300
              +++ +VG
Sbjct: 363 MESDLFVSVG 372



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 138/238 (57%), Gaps = 5/238 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++H+ ++ + +  ++ V   LVDMY KC L++++   F+ + +K+ ++ +A++ GY Q 
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 411

Query: 66  GDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
            +    + +F EM +     +  +   +L++ AGL  + + ++VH   ++     D+ + 
Sbjct: 412 WEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVV 471

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++L+D Y KC  V+ A +IF +  + +L+++ SMI+ +AQ G+GEEAL++F +M +   K
Sbjct: 472 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 531

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           PD      +L+AC+++   ++G++    + K Y     I   N +V++  + G +++A
Sbjct: 532 PDRFVCSSLLNACANLSAFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSIDDA 588



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 134/279 (48%), Gaps = 21/279 (7%)

Query: 24  ESSLVDMYGKC-GLVDESH-RVFDKMLKK-----NSVSSSALLQGYCQTGDFESVIRIFR 76
           E SL  M   C GL D S  ++    L K     +  S++AL+  Y + GD    I +F 
Sbjct: 258 EFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317

Query: 77  EMEEIDLFSFGIVLRACA-------GLAAL-RLGKEVHCQYIRRSGCKDVIIESALVDLY 128
           ++++ D+ S+  V+  C         L  L ++ +++H   ++     D+ +   LVD+Y
Sbjct: 318 KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMY 377

Query: 129 AKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI 188
           +KC  ++ A   F  +P ++LI WN++ISG++Q     EAL +F +M + G   +  +  
Sbjct: 378 SKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLS 437

Query: 189 GVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
            +L + + + ++   R+ H  S+   +     I   N ++D  G+   +E+AE + E   
Sbjct: 438 TILKSTAGLQVVHVCRQVHGLSVKSGFH--SDIYVVNSLIDSYGKCSHVEDAERIFEECT 495

Query: 248 CRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPD 284
              D   +  ++ A   +     A ++  ++  MELKPD
Sbjct: 496 IG-DLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPD 533



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 61/111 (54%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           S+  +L  C    +LR G ++H    +     D  I + L++LY+KC    +A ++  + 
Sbjct: 58  SYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDES 117

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
              +L++W+++ISG+AQNG G  AL  F +M   G K +  +F  VL ACS
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            +QGK++H  ++  G   ++   +SLV+MY KCG +D++ R F ++ ++  VS SA++ G
Sbjct: 550 FEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGG 609

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
             Q G     +++F +M         I L S   VL AC     +   K          G
Sbjct: 610 LAQHGHGRQALQLFNQMLKEGVSPNHITLVS---VLGACNHAGLVTEAKLYFESMEELFG 666

Query: 115 CKDVIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            K +    A ++DL  + G ++ A ++  +MP   N   W +++
Sbjct: 667 FKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALL 710


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 119/331 (35%), Positives = 203/331 (61%), Gaps = 4/331 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++VH   +  G   ++ V +SL+D YGKC  V+++ R+F++    + VS ++++  Y Q 
Sbjct: 480 RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQY 539

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  E  +++F EM++++L    F    +L ACA L+A   GK++H   ++     D+   
Sbjct: 540 GQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAG 599

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++LV++YAKCG +D A + F ++  R +++W++MI G AQ+G G +AL++F+ M + G  
Sbjct: 600 NSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVS 659

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+H++ + VL AC+H GL+   + +F SM + +  KP  EHY CM+DLLGRAG + EA  
Sbjct: 660 PNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVE 719

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L+       ++S+W  LLGA    ++  +  R A+ +  L+P+   ++VLL N+Y + G+
Sbjct: 720 LVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGK 779

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           W +  ++R LM+ S VKK PG SWIE   K+
Sbjct: 780 WENVAEVRRLMRDSKVKKEPGMSWIEVKDKV 810



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 139/239 (58%), Gaps = 5/239 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+ ++ + +  ++ V   LVDMY KC L++++   F+ + +K+ ++ +A++ GY Q
Sbjct: 378 GRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQ 437

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             +    + +F EM +     +  +   +L++ AGL  + + ++VH   ++     D+ +
Sbjct: 438 YWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYV 497

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L+D Y KC  V+ A +IF +  + +L+++ SMI+ +AQ G+GEEAL++F +M +   
Sbjct: 498 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMEL 557

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           KPD      +L+AC+++   ++G++    + K Y     I   N +V++  + G +++A
Sbjct: 558 KPDRFVCSSLLNACANLSAFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSIDDA 615



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 138/270 (51%), Gaps = 14/270 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++HA +   GL  +  + + L+++Y KC     + ++ D+  + + VS SAL+ G
Sbjct: 72  LRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISG 131

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +  F EM  + +    F+F  VL+AC+ +  LR+GK+VH   +      D
Sbjct: 132 YAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGD 191

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + LV +YAKC     + ++F ++P RN+++WN++ S + Q     EA+ +F +M  
Sbjct: 192 VFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVL 251

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE----HYNCMVDLLGRA 233
            G KP+  S   +++AC+  GL D  R     +   Y IK   +      N +VD+  + 
Sbjct: 252 SGIKPNEFSLSSMVNACT--GLRDSSR---GKIIHGYLIKLGYDWDPFSANALVDMYAKV 306

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACT 263
           G L +A ++ E    + D   W  ++  C 
Sbjct: 307 GDLADAISVFEKIK-QPDIVSWNAVIAGCV 335



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 128/242 (52%), Gaps = 5/242 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VH  V+  G  G+V V ++LV MY KC    +S R+FD++ ++N VS +AL   
Sbjct: 173 LRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSC 232

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q       + +F EM     + + FS   ++ AC GL     GK +H   I+     D
Sbjct: 233 YVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWD 292

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               +ALVD+YAK G +  A  +F ++   ++++WN++I+G   +   E+AL +   M  
Sbjct: 293 PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR 352

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+  +    L AC+ MGL + GR+  +S+ K   ++  +     +VD+  +  LLE
Sbjct: 353 SGICPNIFTLSSALKACAGMGLKELGRQLHSSLMK-MDMESDLFVSVGLVDMYSKCDLLE 411

Query: 238 EA 239
           +A
Sbjct: 412 DA 413



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 147/288 (51%), Gaps = 10/288 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +GK +H  +I LG   +    ++LVDMY K G + ++  VF+K+ + + VS +A++ G  
Sbjct: 276 RGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCV 335

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                E  + +  +M+      ++F+    L+ACAG+    LG+++H   ++     D+ 
Sbjct: 336 LHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLF 395

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +   LVD+Y+KC  ++ A   F  +P ++LI WN++ISG++Q     EAL +F +M + G
Sbjct: 396 VSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEG 455

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
              +  +   +L + + + ++   R+ H  S+   +     I   N ++D  G+   +E+
Sbjct: 456 IGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFH--SDIYVVNSLIDSYGKCSHVED 513

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPD 284
           AE + E      D   +  ++ A   +     A ++  ++  MELKPD
Sbjct: 514 AERIFEECTIG-DLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPD 560



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 61/111 (54%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           S+  +L  C    +LR G ++H    +     D  I + L++LY+KC    +A ++  + 
Sbjct: 58  SYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDES 117

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
              +L++W+++ISG+AQNG G  AL  F +M   G K +  +F  VL ACS
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            +QGK++H  ++  G   ++   +SLV+MY KCG +D++ R F ++ ++  VS SA++ G
Sbjct: 577 FEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGG 636

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
             Q G     +++F +M         I L S   VL AC     +   K          G
Sbjct: 637 LAQHGHGRQALQLFNQMLKEGVSPNHITLVS---VLGACNHAGLVTEAKLYFESMEELFG 693

Query: 115 CKDVIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            K +    A ++DL  + G ++ A ++  +MP   N   W +++
Sbjct: 694 FKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALL 737


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 210/347 (60%), Gaps = 17/347 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+V A    +G   N+ V++S + +Y + G  DE+ R+F++M   + ++ +A++ G
Sbjct: 257 LNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISG 316

Query: 62  YCQTGD------------FESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEV 105
           Y Q  D            F++ + IFR+++    + DLF+F  +L  C+ + AL  G+++
Sbjct: 317 YAQIMDSAKDDLQARSRGFQA-LTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQI 375

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
           H Q I+     DV++ SALV++Y KCGC+  A++ FL+MP R  +TW SMISG++Q+G+ 
Sbjct: 376 HAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQP 435

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225
           +EA+++F++M   G +P+ ++F+ +LSACS+ GL++    +F  M KEY I+P ++HY C
Sbjct: 436 QEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGC 495

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285
           M+D+  R G +E+A + I+      + ++W  L+  C +  N  +A   A K++ELKP  
Sbjct: 496 MIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKG 555

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
             +Y+LL N+Y +  RW D  ++R LMK   V  +  +SWI    K+
Sbjct: 556 IETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKV 602



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 128/252 (50%), Gaps = 19/252 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH   I  G      + +SL  +Y K G +D + R F ++ +KN ++ + ++    +
Sbjct: 158 GKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAE 217

Query: 65  TGD-FESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DV 118
             +  E  + +F +M       + F+   V+  C     L LGK+V   +  + GC+ ++
Sbjct: 218 DEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQA-FSFKIGCETNL 276

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-----------NGRGEE 167
            ++++ + LY + G  D A ++F QM   ++ITWN+MISG+AQ             RG +
Sbjct: 277 PVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQ 336

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
           AL IF D+     KPD  +F  +LS CS M  +++G +  A   K   +   + + + +V
Sbjct: 337 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVN-SALV 395

Query: 228 DLLGRAGLLEEA 239
           ++  + G +++A
Sbjct: 396 NMYNKCGCIQDA 407



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 11/228 (4%)

Query: 39  ESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACA 94
           ++ R+FD M ++N V+ +AL+ GY         + +F EM E+      ++ G  L AC 
Sbjct: 91  DARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACL 150

Query: 95  GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS 154
               + LGK+VH   I+        + ++L  LYAK G +D A + F ++P +N+ITW +
Sbjct: 151 ASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTT 210

Query: 155 MISGFAQNGRGEE-ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           MIS  A++    E  + +F DM   G  P+  +   V+S C     ++ G K   + + +
Sbjct: 211 MISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLG-KQVQAFSFK 269

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL--WEVLL 259
              +  +   N  + L  R G  +EA  L E  +   D+S+  W  ++
Sbjct: 270 IGCETNLPVKNSTMYLYLRKGETDEAMRLFEQME---DASIITWNAMI 314


>gi|218199241|gb|EEC81668.1| hypothetical protein OsI_25221 [Oryza sativa Indica Group]
          Length = 931

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 142/345 (41%), Positives = 206/345 (59%), Gaps = 21/345 (6%)

Query: 2   LKQGKEVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L +G+++HA    LGL   + VV +SL+ +Y  CGL   +  +F ++  ++ VS +  + 
Sbjct: 79  LPEGRQLHALAAKLGLAPSHTVVANSLLHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVD 138

Query: 61  GYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG- 114
                GD  + + +FREM+       D ++   VL ACAG  AL LG   H   +R  G 
Sbjct: 139 ALVGNGDHLAALDLFREMQRDTELAPDAYTVQSVLGACAGAGALSLGVYAHALLLRELGG 198

Query: 115 -------CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
                   +D++I ++LVDLY KCG ++ A Q+F +MP R+L +WN MI   A +GR  E
Sbjct: 199 DGDGEAVSRDMLINNSLVDLYGKCGALELAQQVFDRMPARDLASWNVMILTLANHGRVCE 258

Query: 168 ALRIFDDMTE-GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           ++ +FD MT+     P+ ++F+ VLSAC+H GL++ GR++FA M  +YRIKP+IEHY CM
Sbjct: 259 SVELFDRMTQVEKMAPNAITFVAVLSACNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCM 318

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA--HVAERVAKKIMELKPD 284
           VDLL RAG +EEA  ++   +CR D+ +W  LL AC   +NA   + E +AK  +E+ PD
Sbjct: 319 VDLLARAGFIEEALDIVAGMNCRPDAIIWRSLLDACCK-KNAGLELTEAMAKLALEV-PD 376

Query: 285 CHLS--YVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             +S  YVLL  VY +  RWND   +R LM   GVKK PG S IE
Sbjct: 377 DAVSGVYVLLSRVYASAQRWNDVGMVRRLMVEEGVKKEPGFSSIE 421


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 132/309 (42%), Positives = 193/309 (62%), Gaps = 7/309 (2%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF 84
           +S+V+ Y KCG ++ + R FD+  +KN+V  SA++ GY Q    +  +++F EM E  + 
Sbjct: 428 TSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVV 487

Query: 85  ----SFGIVLRACAGLAALRLGKEVHCQY--IRRSGCKDVIIESALVDLYAKCGCVDFAH 138
               +   VL AC  L  L LG  +H QY  + +     V +E+A+VD+YAKCG +D A 
Sbjct: 488 PIEHTLVSVLSACGQLTCLNLGDWIH-QYFVVGKIIPLSVTLENAIVDMYAKCGSIDAAT 546

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F  MP RNLI+WN+MI+G+A NGR ++A+ +FD M   G +P++++F+ +L+ACSH G
Sbjct: 547 EVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGG 606

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           LI  GR++F +M ++Y IKP+  HY CMVDLLGR GLLEEA  LI N   +   + W  L
Sbjct: 607 LISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGAL 666

Query: 259 LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
           L AC    N  +A   A  ++ L P+    YVLL N      +W+D  ++R+LMK  GVK
Sbjct: 667 LNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVK 726

Query: 319 KMPGKSWIE 327
           K+PG S IE
Sbjct: 727 KIPGYSLIE 735



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 42/295 (14%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G+ V+  V  +G    ++V + L+  Y + GL+  + +VFD+   K+ V+ + ++ GY 
Sbjct: 275 EGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYA 334

Query: 64  QTGDFESVIRIFR-------EMEEIDLFSFGIVLRACAGLAALRLGKEVH---------C 107
                E  + +F        E  E+ L +   V+ AC+ +  L +GK VH         C
Sbjct: 335 AHDCSEEAMEVFELMLLSHVEPNEVTLIA---VVSACSDMGNLEMGKRVHEKVEEKNMRC 391

Query: 108 Q----------YIR------------RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
                      Y++            R   KDV   +++V+ YAKCG ++ A + F Q P
Sbjct: 392 SLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTP 451

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +N + W++MI+G++QN + +E+L++F +M E G  P   + + VLSAC  +  ++ G  
Sbjct: 452 RKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDW 511

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
                     I   +   N +VD+  + G ++ A  +      R+  S W  ++ 
Sbjct: 512 IHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLIS-WNTMIA 565



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 128/249 (51%), Gaps = 7/249 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM--YGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           ++Q K++ A++   G+  +    S ++        G +  +H +F+++ + N+   + ++
Sbjct: 170 MRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMI 229

Query: 60  QGYCQTGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           +GY         F   + +F+   E+D  SF   L+AC     +  G+ V+C   +    
Sbjct: 230 RGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFD 289

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            ++++ + L+  YA+ G +  A Q+F +   ++++TW +MI G+A +   EEA+ +F+ M
Sbjct: 290 CELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELM 349

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                +P+ V+ I V+SACS MG ++ G++      +E  ++  +  +N ++D+  +   
Sbjct: 350 LLSHVEPNEVTLIAVVSACSDMGNLEMGKR-VHEKVEEKNMRCSLSLHNALLDMYVKCDC 408

Query: 236 LEEAETLIE 244
           L +A  L +
Sbjct: 409 LVDARELFD 417



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 35/194 (18%)

Query: 129 AKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI 188
           A  G + +AH IF ++   N   WN+MI G+    +   A   F  M +   + D  SF+
Sbjct: 202 AHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFV 261

Query: 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-- 246
             L AC     +  G   +  + K      ++   N ++      GLL+ A  + + +  
Sbjct: 262 FALKACQQFETVFEGESVYCVVWK-MGFDCELLVRNGLIHFYAERGLLKNARQVFDESSD 320

Query: 247 ----------------DCRHDS-SLWEVLL---------------GACTTFRNAHVAERV 274
                           DC  ++  ++E++L                AC+   N  + +RV
Sbjct: 321 KDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRV 380

Query: 275 AKKIMELKPDCHLS 288
            +K+ E    C LS
Sbjct: 381 HEKVEEKNMRCSLS 394


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 134/350 (38%), Positives = 202/350 (57%), Gaps = 38/350 (10%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV+ + +V  Y + G +  + ++FD M  ++++S + +L GY   GD E+  ++F EM 
Sbjct: 219 DVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMP 278

Query: 80  EIDLFSFG------------------------------------IVLRACAGLAALRLGK 103
           E ++FS+                                      VL ACA L AL LGK
Sbjct: 279 ERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGK 338

Query: 104 EVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
            VH  Y    G K  + + +AL+D+Y+KCG ++ A ++F  M +++LITWNSMI G A +
Sbjct: 339 WVHV-YAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATH 397

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
           G G +AL +F  M   G KPD ++FIGVL +C+H+GL++ G  +F SM  EY I P+IEH
Sbjct: 398 GCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEH 457

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
           Y CMVDL GRAGLL+ A   ++      D+ +W  LLGAC  ++N  +AE   +K++ L+
Sbjct: 458 YGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLE 517

Query: 283 PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           P    +YVLL N+Y  +GRW D  +++ LM+ +G KK+PG S IE N  +
Sbjct: 518 PKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSV 567



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 137/263 (52%), Gaps = 9/263 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G+E+H +VI  GL GN  V ++L+D+Y     +  ++++F  ML++N V+ ++++ GY 
Sbjct: 141 EGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYI 200

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
                    R+F    E D+  + I++     +  ++  +++      R    D +  + 
Sbjct: 201 LCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYR----DTMSWNT 256

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKP 182
           +++ YA  G V+   Q+F +MP RN+ +WN +I G+A NG   E LR F  M  +G   P
Sbjct: 257 MLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVP 316

Query: 183 DHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           +  + + VLSAC+ +G +D G+  H  + T  +  K  I   N ++D+  + GL+E A  
Sbjct: 317 NDATLVTVLSACARLGALDLGKWVHVYAATIGF--KGSIYVGNALIDMYSKCGLIENAME 374

Query: 242 LIENADCRHDSSLWEVLLGACTT 264
           + E+ D + D   W  ++    T
Sbjct: 375 VFESMDLK-DLITWNSMICGLAT 396



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 127/260 (48%), Gaps = 14/260 (5%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++V A++IT G   N  V  ++V  +     +  +  +FD          +A+ +GY   
Sbjct: 42  QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHN 101

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
             +  V+ +F +M+ +D+    F+F +VL++CA + A   G+E+HC+ I+     +  + 
Sbjct: 102 AFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVA 161

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + L+D+Y+    +  A+++F+ M  RN++ W SMISG+    R   A R+FD   E    
Sbjct: 162 TTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPE---- 217

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D V +  ++S    +G +   RK F +M   YR       +N M++     G +E  E 
Sbjct: 218 RDVVLWNIMVSGYIEIGDMKAARKLFDTMP--YR---DTMSWNTMLNGYANNGDVEACEQ 272

Query: 242 LIENADCRHDSSLWEVLLGA 261
           L E    R+  S W  L+G 
Sbjct: 273 LFEEMPERNVFS-WNGLIGG 291



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH    T+G  G++ V ++L+DMY KCGL++ +  VF+ M  K+ ++ ++++ G
Sbjct: 334 LDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICG 393

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F +M    E+ D  +F  VL +C  L  +  G       +       
Sbjct: 394 LATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAP 453

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            I     +VDL+ + G +D A +   +MP+  + + W +++
Sbjct: 454 QIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALL 494


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 207/362 (57%), Gaps = 36/362 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + QG+E+H      GL  NVVV ++++ MYGKCG +D++   F+++  KNSV+ +A++  
Sbjct: 181 IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 240

Query: 62  YCQTGDFESVIRIFREMEE----------------------IDLF--------------S 85
           Y   G     + +FREM +                      +DL+              +
Sbjct: 241 YKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGT 300

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           F  V+  CA L+AL+ G+ +H +    +   ++++ +ALV +Y KCGC+D A  +F  M 
Sbjct: 301 FVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMK 360

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +++ I+WN++IS +A +G  ++AL ++ +M   G KP  V+F+G+LSACSH GL+  G  
Sbjct: 361 LKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLD 420

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +F  M  ++RIKP + H+ C++DLLGR G L EAE ++++   + ++  W  LLGAC T 
Sbjct: 421 YFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTH 480

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            +     R A ++++  P     YVLL N+Y A GRW D  KIR +M   GVKK PGKSW
Sbjct: 481 GDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSW 540

Query: 326 IE 327
           IE
Sbjct: 541 IE 542



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 126/250 (50%), Gaps = 14/250 (5%)

Query: 2   LKQGKEVHAKVITLGLCGN--VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           +   + +H+ +++L    +    + + L++MYGKCG +  +  +F+ M  +N  + +  +
Sbjct: 76  ISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAM 135

Query: 60  QGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRL--GKEVHCQYIRRS 113
             +   G     +  FR M    E  D  +F ++L A A + A  +  G+E+H +Y R S
Sbjct: 136 AAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIH-RYARIS 194

Query: 114 G-CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           G   +V++ +A++ +Y KCG +D A   F ++  +N +TWN+M++ +  +GR  EAL +F
Sbjct: 195 GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 254

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            +M +     D V +  +++A +  G   +    + SM     + PK   +  ++D+   
Sbjct: 255 REMHDA----DSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAE 310

Query: 233 AGLLEEAETL 242
              L++   +
Sbjct: 311 LSALKQGRAI 320



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 108/234 (46%), Gaps = 24/234 (10%)

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR--RSGCKDVI 119
           G+ ES+ +  + +E    E+D   +  ++R C    A+   + +H   +    S  +   
Sbjct: 39  GERESLHKSIQLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPF 98

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + + L+++Y KCG + +A ++F  MP RN+ TW   ++ F+ NG   EAL  F  M + G
Sbjct: 99  LANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSG 158

Query: 180 TKPDHVSFIGVL--SACSHMGLIDRGRK--HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            +PD V+F  +L   A      ID+GR+   +A ++    + P +     ++ + G+ G 
Sbjct: 159 ERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISG---LLPNVVVGTAVISMYGKCGR 215

Query: 236 LEEAETLIENADCRHDSSLWEVLLG----------ACTTFRNAHVAERVAKKIM 279
           L++A    E    + +S  W  ++           A   FR  H A+ V    M
Sbjct: 216 LDDARAAFEELQWK-NSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAM 268


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 38/370 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK--NSVSSSALL 59
           LK GK++H+ ++  G+  +  + ++L+  Y K G V+ + R+ DK +    N +S +ALL
Sbjct: 312 LKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALL 371

Query: 60  QGYCQTGDFESVIRIFREM----------------------EEIDLF------------- 84
           +GY + GD +    +F  M                      E ++LF             
Sbjct: 372 EGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSH 431

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +   VL ACA LA L  GK++HC+ IR    + V + +A++ +YA+ G V  A ++F Q+
Sbjct: 432 TLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQI 491

Query: 145 PVRN-LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
             R   +TW SMI   AQ+G GE+A+ +F++M   G KPD V++IGV SAC+H G ID+G
Sbjct: 492 CWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKG 551

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           ++++  M  E+ I P++ HY CMVDLL RAGLL EA   I+      D+ +W  LL AC 
Sbjct: 552 KRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACR 611

Query: 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGK 323
             +NA +AE  A+K++ + PD   +Y  L NVY A GRWNDA +I  L K   VKK  G 
Sbjct: 612 VRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGF 671

Query: 324 SWIEANSKLN 333
           SW    SK++
Sbjct: 672 SWTHVQSKVH 681



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 143/327 (43%), Gaps = 72/327 (22%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH+ VI LGL   V V +S++ MYGKCG  + +  VF++M  ++  S +A++  Y  
Sbjct: 182 GRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTH 241

Query: 65  TGDFESVIRIFREMEE------------------------------------IDLFSFGI 88
            G  +  + +F  MEE                                     D F+   
Sbjct: 242 QGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTS 301

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQI------- 140
           VL ACA L  L++GK++H  YI R+G      I +AL+  YAK G V+ A +I       
Sbjct: 302 VLSACANLRMLKMGKQMH-SYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVA 360

Query: 141 --------------------------FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
                                     F  M  R++I W +MI G+ QNG+ +EA+ +F  
Sbjct: 361 DLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRS 420

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G +P+  +   VLSAC+ +  +  G++      +  + +  +   N ++ +  R+G
Sbjct: 421 MIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQ-EQSVSVSNAIITVYARSG 479

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
            +  A  + +    R ++  W  ++ A
Sbjct: 480 SVPLARRVFDQICWRKETVTWTSMIVA 506



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 106/203 (52%), Gaps = 8/203 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N    +SL+ MY K G + ++  VF +M ++++VS + ++ G  + G F   ++ F +M 
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 80  EIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
              L    F    VL +CA   A  +G++VH   I+      V + ++++ +Y KCG  +
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAE 215

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A  +F +M VR+  +WN+M+S +   GR + AL +F++M E       VS+  +++  +
Sbjct: 216 TARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSI----VSWNAIIAGYN 271

Query: 196 HMGLIDRGRKHFASMTKEYRIKP 218
             GL D   K F+ M     ++P
Sbjct: 272 QNGLDDMALKFFSRMLTASSMEP 294



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 39/199 (19%)

Query: 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCG----CVDFAHQIFLQMPV--RNLITWNSM 155
           G+ +H   ++        + + L+  YA+ G    C   A ++F  +P   RN  TWNS+
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103

Query: 156 ISGFAQNGRGE-------------------------------EALRIFDDMTEGGTKPDH 184
           +S +A++GR                                 +A++ F DM   G  P  
Sbjct: 104 LSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQ 163

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
                VLS+C+       GRK   S   +  +   +   N ++ + G+ G  E A  + E
Sbjct: 164 FMLTNVLSSCAATEARGIGRK-VHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFE 222

Query: 245 NADCRHDSSLWEVLLGACT 263
               R +SS W  ++   T
Sbjct: 223 RMKVRSESS-WNAMVSLYT 240


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 130/334 (38%), Positives = 202/334 (60%), Gaps = 5/334 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G+E+H   I     G   V+++L+ MY +C  +  ++ +F     KN ++ +++L G
Sbjct: 346 IKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSG 405

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y      E    +FREM     E +  +   +L  CA +A L+ GKE HC  +RR+G KD
Sbjct: 406 YTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKD 465

Query: 118 -VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            +++ ++LVD+YA+ G V  A ++F  +  R+ +T+ S+I+G+   G G EAL++FD+M 
Sbjct: 466 YLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMK 525

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +   KPDHV+ + VLSACSH GL+  G K F  M   Y I P++EH+ CMVDL GRAGLL
Sbjct: 526 KRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLL 585

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            +A+ +I     R  S++W  LLGAC    NA + E  A+K++E++P+    YVL+ N+Y
Sbjct: 586 HKAKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMY 645

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
            A G W+   K+RT M+  GV+K PG +W++  S
Sbjct: 646 AAAGCWSKLAKVRTYMRDLGVRKAPGCAWVDVGS 679



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 147/297 (49%), Gaps = 43/297 (14%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC- 63
           GK++HA +    L  N+ V +SLV MY K G +  +  +F+ ML+++ VS + ++ GY  
Sbjct: 213 GKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYAS 272

Query: 64  ----------------------------------QTGDFESVIRIFREMEE--IDLFSFG 87
                                             Q+G+FE  + +   M    ID+ S  
Sbjct: 273 KGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVA 332

Query: 88  IV--LRACAGLAALRLGKEVHCQYIRR--SGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
            +  L AC+ + A++LG+E+H   IR    G  +V  ++AL+ +Y++C  +  A+ +F  
Sbjct: 333 TIIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNV--KNALITMYSRCKYLRHAYNLFQS 390

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
              +N+ITWNSM+SG+    R EEA  +F +M   G +P++V+   +L  C+ +  +  G
Sbjct: 391 TRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHG 450

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           ++    + +    K  +  +N +VD+  R+G + EA+ L ++   R + +   ++ G
Sbjct: 451 KEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAG 507



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 132/302 (43%), Gaps = 43/302 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QGK++H  +I+LG   + ++   LV  Y    L+ ++H + +     + +  + L+  
Sbjct: 109 LSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISS 168

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G     +  +++M       D F++  VL+AC     +  GK++H          +
Sbjct: 169 YVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWN 228

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFA----------------- 160
           + + ++LV +YAK G +  A  +F  M  R+ ++WN+MISG+A                 
Sbjct: 229 LFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRV 288

Query: 161 ------------------QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
                             Q+G  EEAL +   M   G   D V+ I  L ACSH+G I  
Sbjct: 289 EGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKL 348

Query: 203 GRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           GR+ H +++   Y     ++  N ++ +  R   L  A  L ++   ++  + W  +L  
Sbjct: 349 GREIHGSAIRSFYDGVDNVK--NALITMYSRCKYLRHAYNLFQSTRTKNIIT-WNSMLSG 405

Query: 262 CT 263
            T
Sbjct: 406 YT 407



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 2/164 (1%)

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
           L +L  GK++H   I     +  II   LV  Y     +  AH I     + + + WN +
Sbjct: 106 LKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLL 165

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215
           IS + +NG   EAL  +  MT  G +PD  ++  VL AC     I  G+K  AS+     
Sbjct: 166 ISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASC- 224

Query: 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +   +  +N +V +  + G L  A  L EN   R D S W  ++
Sbjct: 225 LGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVS-WNTMI 267


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 201/361 (55%), Gaps = 36/361 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  +HA  + +G   N+ V SSL+DMY KC     + RVF+ + +KN+V  ++L+ G
Sbjct: 395 LRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISG 454

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI--------------------------------- 88
           Y   G       +F +M   +  S+                                   
Sbjct: 455 YSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITL 514

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA L +L +G+ VH + ++     ++ + +AL D+YAK G +D + ++F QMP 
Sbjct: 515 SSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPE 574

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +N ITW +M+ G A+NG  EE++ +F+DM E G  P+  +F+ +L ACSH GL+++   +
Sbjct: 575 KNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHY 634

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F +M + + I PK +HY CMVD+L RAG L EAE L+       D+S W  LL AC+T+R
Sbjct: 635 FETM-QAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYR 693

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  + ER AKK+ EL+ D    YVLL N+Y + G+W DA + R LM+ + +KK  G SW+
Sbjct: 694 NKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWL 753

Query: 327 E 327
           +
Sbjct: 754 Q 754



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 52/289 (17%)

Query: 2   LKQGKEVHAKVITLGL----------------CGNVVVESSLVDMYGKCGLVDESHRVFD 45
            ++  EVH  +ITL L                  +VV  ++L+D+Y   G +D + RV D
Sbjct: 278 FEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLD 337

Query: 46  KMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRL 101
            M  +N VS   L+  + Q GD    ++++ +M       ++  F  VL ACA L  LR 
Sbjct: 338 AMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRG 397

Query: 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
           G  +H   ++     ++ + S+L+D+Y KC    +A ++F  +P +N + WNS+ISG++ 
Sbjct: 398 GTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSW 457

Query: 162 NG-------------------------------RGEEALRIFDDMTEGGTKPDHVSFIGV 190
           NG                               R  +AL  F  M   G  P  ++   V
Sbjct: 458 NGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSV 517

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           L AC+++  ++ GR   A + K   I+  I     + D+  ++G L+ +
Sbjct: 518 LLACANLCSLEMGRMVHAEIVK-LGIEDNIFMGTALCDMYAKSGDLDSS 565



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 37/248 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVE-SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +K G    A+ +  G+    VV  +++VD   K G V ++  ++++    +    +A++ 
Sbjct: 160 VKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMIS 219

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAG-----LAALRLGKEVHCQYIR 111
           G+ +    +    +FR+M       ++ +   V++AC G     LA   +G  V C    
Sbjct: 220 GFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFE 279

Query: 112 RS---------------------------GCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +S                             +DV+  +AL+D+YA  G +D A ++   M
Sbjct: 280 KSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAM 339

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P RN ++W ++I+   Q G   EAL+++  M   G +P+   F  VLSAC+ +  +  G 
Sbjct: 340 PARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGT 399

Query: 205 KHFASMTK 212
           +  A+  K
Sbjct: 400 RIHANALK 407



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 106/270 (39%), Gaps = 39/270 (14%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSA---LLQGYCQ 64
           +HA  +  GL  +  V S+L+  Y       +  + F   +  ++ SS     ++  + +
Sbjct: 102 LHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFRDCVAADAASSFTYDFMVSEHVK 161

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
            GD  S  R+F  M E  + S+  ++ A                 ++R   +D       
Sbjct: 162 AGDIASARRLFYGMPEKSVVSYTTMVDA----------------LMKRGSVRDA------ 199

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           V+LY +C             P+ ++  + +MISGF +N   ++A  +F  M     +P+ 
Sbjct: 200 VELYERC-------------PLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNV 246

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           V+ I V+ AC   G  D          K    +  IE +N ++ L  R G    A  + +
Sbjct: 247 VTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFD 306

Query: 245 NADCRHDSSLWEVLLGACTTFRNAHVAERV 274
           + + R D   W  LL       +   A RV
Sbjct: 307 DMEVR-DVVSWTALLDVYADLGDLDGARRV 335


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/315 (39%), Positives = 198/315 (62%), Gaps = 4/315 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VVVE++++  Y K G V+ + R+F +M  KN V+ ++++ GY +    E  +++F+ M 
Sbjct: 228 SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMI 287

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           E     +  S   VL  C+ L+AL LG+++H    +    KD    ++L+ +Y KCG +D
Sbjct: 288 ESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLD 347

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A ++FL+MP +++I+WN+MISG+AQ+G G +AL +FD M  G  KPD ++F+ V+ AC+
Sbjct: 348 SAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACN 407

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H G +D G ++F SM KE+ I+ K  HY C++DLLGRAG L+EA +LI+    +  ++++
Sbjct: 408 HAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIY 467

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGAC   +N  +AE  A+ ++ L P     YV L N+Y A  +W+   K+R +MK  
Sbjct: 468 GTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEH 527

Query: 316 GVKKMPGKSWIEANS 330
            V K+PG SWIE  S
Sbjct: 528 NVVKIPGYSWIEIKS 542



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 94/169 (55%), Gaps = 4/169 (2%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGL 96
           V+ +   F+KM  K+  S + L+ G+ Q G  +    +F  M E +  S+  ++      
Sbjct: 152 VEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEH 211

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
             L   +E++    +  G K V++E+A++  Y K G V+ A +IF +M V+NL+TWNSMI
Sbjct: 212 GDLEAAEELY----KNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMI 267

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +G+ +N R E+ L++F  M E   +P+ +S   VL  CS++  +  GR+
Sbjct: 268 AGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQ 316



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ-TGDFESVIRIFREME 79
           V +  ++      C L + +  VF+KM  + +V+ + +L GY +  G  +    +F ++ 
Sbjct: 74  VSLNKTIASFVRACDL-ESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIP 132

Query: 80  EIDLFSFGIVLRACAGLAALR-LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
           E D  S+ I+L     +  LR  G E    +  +   KD+   + L+  +A+ G +  A 
Sbjct: 133 EPDSVSYNIML-----VCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAF 187

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +F  MP +N ++W++MISG+ ++G  E A  ++ ++
Sbjct: 188 DLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNV 224



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H  V    L  +    +SL+ MY KCG +D + ++F +M +K+ +S +A++ G
Sbjct: 311 LPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISG 370

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F +M     + D  +F  V+ AC     + LG     QY  +S  K+
Sbjct: 371 YAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLG----VQYF-KSMKKE 425

Query: 118 VIIE------SALVDLYAKCGCVDFAHQIFLQMPVR 147
             IE      + ++DL  + G +D A  +  +MP +
Sbjct: 426 FGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFK 461



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 11/163 (6%)

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-NGRGEEALRIFDDM 175
           DV+  +  +  + +   ++ A  +F +M VR  +TWN+M+SG+ +  G+ +EA  +FD +
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E    PD VS+  ++  C    L   G +   +   +  +K  I  +N ++    + G 
Sbjct: 132 PE----PDSVSY-NIMLVCY---LRSYGVEAALAFFNKMPVK-DIASWNTLISGFAQNGQ 182

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           +++A  L      ++  S W  ++       +   AE + K +
Sbjct: 183 MQKAFDLFSVMPEKNGVS-WSAMISGYVEHGDLEAAEELYKNV 224


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 201/335 (60%), Gaps = 4/335 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           + GK+V  +    GL  N  V +S++ M+ K   ++++ R F+ + +KN VS +  L G 
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           C+  +FE   ++  E+ E +L    F+F  +L   A + ++R G+++H Q ++     + 
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 509

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +AL+ +Y+KCG +D A ++F  M  RN+I+W SMI+GFA++G     L  F+ M E 
Sbjct: 510 PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE 569

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KP+ V+++ +LSACSH+GL+  G +HF SM ++++IKPK+EHY CMVDLL RAGLL +
Sbjct: 570 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 629

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   I     + D  +W   LGAC    N  + +  A+KI+EL P+   +Y+ L N+Y  
Sbjct: 630 AFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYAC 689

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            G+W ++ ++R  MK   + K  G SWIE   K++
Sbjct: 690 AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIH 724



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 154/309 (49%), Gaps = 14/309 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSAL 58
           L  GK++H+  I  GL  +V  E SLVDMY KC   G VD+  +VFD+M   + +S +AL
Sbjct: 285 LSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTAL 342

Query: 59  LQGYCQTGDFES-VIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           + GY +  +  +  I +F EM      E + F+F    +AC  L+  R+GK+V  Q  +R
Sbjct: 343 ITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR 402

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               +  + ++++ ++ K   ++ A + F  +  +NL+++N+ + G  +N   E+A ++ 
Sbjct: 403 GLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLL 462

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            ++TE        +F  +LS  +++G I +G +  + + K   +       N ++ +  +
Sbjct: 463 SEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVK-LGLSCNQPVCNALISMYSK 521

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSYVL 291
            G ++ A  +    + R+  S   ++ G         V E   + I E +KP+  ++YV 
Sbjct: 522 CGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPN-EVTYVA 580

Query: 292 LDNVYRAVG 300
           + +    VG
Sbjct: 581 ILSACSHVG 589



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 113/214 (52%), Gaps = 11/214 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML---KKNSVSSSAL 58
            + GK VHA++I   +  + V+ +SL+ +Y K G   ++  VF+ M    K++ VS SA+
Sbjct: 78  FRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAM 137

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           +  Y   G     I++F E  E+ L    + +  V+RAC+    + +G+ V   ++ ++G
Sbjct: 138 MACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGR-VTLGFLMKTG 196

Query: 115 C--KDVIIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
               DV +  +L+D++ K     + A+++F +M   N++TW  MI+   Q G   EA+R 
Sbjct: 197 HFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRF 256

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           F DM   G + D  +   V SAC+ +  +  G++
Sbjct: 257 FLDMVLSGFESDKFTLSSVFSACAELENLSLGKQ 290



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 78  MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
           +  +D  +F  +L++C      RLGK VH + I      D ++ ++L+ LY+K G    A
Sbjct: 57  IRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKA 116

Query: 138 HQIFLQM---PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
             +F  M     R++++W++M++ +  NGR  +A+++F +  E G  P+   +  V+ AC
Sbjct: 117 EDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRAC 176

Query: 195 SHMGLIDRGR 204
           S+   +  GR
Sbjct: 177 SNSDFVGVGR 186


>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
 gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
          Length = 597

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 197/336 (58%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+EV       G+ GNV V ++ VD+Y KCG +D++  VFDKM  K+ V+  A++ G
Sbjct: 193 LVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGG 252

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     + +F  M+      D ++    L AC  L AL LG+ V           +
Sbjct: 253 YASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWDEVLGN 312

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ +AL+D+YAKCG    A  +F +M  R++I WN+MI G    G  + A  +   M +
Sbjct: 313 PVLGTALIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQMKK 372

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G   +  +FIG+L +C+H GL+  GR++F +MT+ Y I+P+IEHY  MVDLL RAGLL+
Sbjct: 373 SGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLYHIRPRIEHYGIMVDLLSRAGLLQ 432

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI++     ++ +W  LLG C   RNA +AE V K++++L+P    +YV+L N+Y 
Sbjct: 433 EAHQLIQDMPMEANAVVWGALLGGCKIHRNADLAEHVLKQLIQLEPWNSGNYVVLSNIYS 492

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             GRW DA K+R  MK  GV+K+P  SW+E + K++
Sbjct: 493 NSGRWEDAAKLRLEMKAKGVEKVPASSWVELDGKVH 528



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 133/263 (50%), Gaps = 7/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS-VSSSALLQ 60
           L  G ++HA+ + L    N  V +SL+++Y +CG + ++ + FD+M +  S VS +AL+ 
Sbjct: 91  LTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQKAFDEMRQPPSTVSWTALIT 150

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y   G     I + R         D F+   VL ACA +A L  G+EV     +     
Sbjct: 151 AYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAG 210

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V + +A VDLY KCG +D A  +F +M  ++++ W +M+ G+A NG   EAL +F  M 
Sbjct: 211 NVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQ 270

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD  +  G LSAC+ +G +D GR+    M +   +         ++D+  + G  
Sbjct: 271 VEGMRPDCYTVAGALSACTRLGALDLGRR-VVGMLQWDEVLGNPVLGTALIDMYAKCGST 329

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
            EA  + +    R D  +W  ++
Sbjct: 330 GEAWMVFQKMRNR-DIIVWNAMI 351


>gi|242055215|ref|XP_002456753.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
 gi|241928728|gb|EES01873.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
          Length = 521

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/314 (41%), Positives = 187/314 (59%), Gaps = 7/314 (2%)

Query: 23  VESSLVDMYGK---CGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           V ++LVD Y +    G    +  VFD+M +++ V+ ++LL G  + G   + +R +  M 
Sbjct: 82  VANALVDAYARLPCAGGAATARAVFDEMPRRDVVTWTSLLTGLARAGAHAAAVRAYHGMV 141

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               + D F+   VL +CAG  AL +G+ VH   +    C    + ++LV +YAK G + 
Sbjct: 142 AAGVQTDEFAVAAVLSSCAGSTALDVGRSVHAAAVHLGLCPFRSVGNSLVSMYAKTGALH 201

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A  +F  MP R  ITW ++I G+AQNGRG  +L ++ DM   G +PD+V+FIG+L ACS
Sbjct: 202 DARAVFDAMPARCTITWTALIVGYAQNGRGRRSLEVYTDMVRSGCRPDYVTFIGLLFACS 261

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H GL+D GR HF SM  +Y I P  +HY CMVDLLGRAG L+EA  L+  +    D+++W
Sbjct: 262 HAGLVDAGRDHFRSMAVDYGIAPGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVW 321

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
           + LLGAC   RNA +AER A+ +  L P   + YV+L N+Y    RW D  +IR LMK  
Sbjct: 322 KSLLGACRVHRNAELAERAAEMVWRLDPTDAVPYVMLSNLYSRARRWGDVARIRALMKAR 381

Query: 316 GVKKMPGKSWIEAN 329
           G+ K PG SW+  N
Sbjct: 382 GITKEPGCSWVGVN 395



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 41/199 (20%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VHA  + LGLC    V +SLV MY K G + ++  VFD M  + +++ +AL+ G
Sbjct: 165 LDVGRSVHAAAVHLGLCPFRSVGNSLVSMYAKTGALHDARAVFDAMPARCTITWTALIVG 224

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVII 120
           Y Q G     + ++ +M                                 RSGC+ D + 
Sbjct: 225 YAQNGRGRRSLEVYTDMV--------------------------------RSGCRPDYVT 252

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLIT-----WNSMISGFAQNGRGEEALRIFDDM 175
              L+   +  G VD     F  M V   I      +  M+    + GR +EA+   D +
Sbjct: 253 FIGLLFACSHAGLVDAGRDHFRSMAVDYGIAPGPDHYACMVDLLGRAGRLDEAM---DLL 309

Query: 176 TEGGTKPDHVSFIGVLSAC 194
               T+ D   +  +L AC
Sbjct: 310 NRSSTELDATVWKSLLGAC 328


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 130/348 (37%), Positives = 212/348 (60%), Gaps = 16/348 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK+VH +++  G  G+V V + L+  YG CG +D + +VFD+M +++ VS ++++  
Sbjct: 148 LSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 207

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-- 116
             + G+++S +++FR+M+   E D ++   VL ACAGL +L LG   H   +R       
Sbjct: 208 LVRVGEYDSALQLFRDMQKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVA 267

Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV+I+++L+++Y KCG +  A Q+F  M   +L +WN+MI GFA +G+ EEA+  FD M
Sbjct: 268 MDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCM 327

Query: 176 TEGG--TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            + G   KP+ V+F+ +L AC+H G++++GR++F  M +EY I+P +EHY C++DLL RA
Sbjct: 328 VKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLARA 387

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGA-CTTFRNAHVAERVAKKIMELKPD-------C 285
           G + EA  ++ +   + D+ +W  LL A C    +  ++E +A+ I+    D       C
Sbjct: 388 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQSSNSNC 447

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             +YVLL  VY +  RWND   +R LM   G++K PG S IE N   N
Sbjct: 448 SGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGISN 495



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 140/288 (48%), Gaps = 27/288 (9%)

Query: 2   LKQGKEVHAKVI---------TLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKN 51
           + Q K++HA  +         TL L G ++ + SS  D       V+ + RVFD +   +
Sbjct: 42  MSQLKQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSD-------VNYAFRVFDSIENHS 94

Query: 52  SVSSSALLQGYCQ-TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEV 105
           S   + L++         E    ++R+M E      D  +F  VL+ACA +  L  GK+V
Sbjct: 95  SFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQV 154

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
           HCQ ++     DV + + L+  Y  CGC+D A ++F +MP R+L++WNSMI    + G  
Sbjct: 155 HCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEY 214

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-- 223
           + AL++F DM +   +PD  +   VLSAC+ +G +  G      + +   +   ++    
Sbjct: 215 DSALQLFRDM-QKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIK 273

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
           N ++++  + G L  AE + +    +HD + W  ++    T   A  A
Sbjct: 274 NSLIEMYCKCGSLRMAEQVFQGMR-KHDLASWNAMILGFATHGKAEEA 320


>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09190-like [Glycine max]
          Length = 483

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 130/353 (36%), Positives = 209/353 (59%), Gaps = 36/353 (10%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VHA V+ LG   +  V  + +++Y  C  + ++ +VFD+M   + V  + +++G+C+ GD
Sbjct: 128 VHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGD 187

Query: 68  FESVIRIFREMEE----------------------IDLF-------------SFGIVLRA 92
            E+ +++F +M+E                      ++LF             S   VL  
Sbjct: 188 LETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDASLVTVLPV 247

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
           CA L A+ +G+ +H     +   +D I + ++LVD Y KCG +  A  IF  M  +N+++
Sbjct: 248 CARLGAVDIGEWIHSYANSKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFNDMASKNVVS 307

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
           WN+MISG A NG GE  + +F++M  GG +P+  +F+GVL+ C+H+GL+DRGR  FASM+
Sbjct: 308 WNAMISGLAYNGEGEVGVNLFEEMVHGGFEPNDSTFVGVLACCAHVGLVDRGRDLFASMS 367

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
            ++++ PK+EHY C+VDLLGR G + EA  LI +   +  ++LW  LL AC T+ +  +A
Sbjct: 368 VKFKVSPKLEHYGCVVDLLGRCGHVREARDLITSMPLKPTAALWGALLSACRTYGDREIA 427

Query: 272 ERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324
           E  AK+++ L+P    +YVLL NVY   GRW++  K+R LM+  GVKK+PG+S
Sbjct: 428 ENAAKELVRLEPWNSGNYVLLSNVYAEEGRWDEVEKVRVLMRGGGVKKVPGQS 480



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 120/288 (41%), Gaps = 36/288 (12%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+H   +  GL  +  + +  V +      V  + R+F      N +  +A+++ +    
Sbjct: 26  EIHGHFLRHGLQQSNQILAHFVSVCASLRRVPYATRLFAHTHNPNILLFNAIIKAHSLHP 85

Query: 67  DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
            F +    F  M+      D ++   + ++ + L    LG  VH   +R    +   +  
Sbjct: 86  PFHASFSFFSLMKTRAISPDEYTLAPLFKSASNLRYYVLGGCVHAHVVRLGFTRHASVRV 145

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF----------------------- 159
           A +++YA C  +  A ++F +M   +++ WN MI GF                       
Sbjct: 146 AALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVS 205

Query: 160 --------AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
                   A+N + E+AL +F++M E G +PD  S + VL  C+ +G +D G    +   
Sbjct: 206 WNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYAN 265

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            +  ++  I   N +VD   + G L+ A ++  +   ++  S W  ++
Sbjct: 266 SKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFNDMASKNVVS-WNAMI 312


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 119/334 (35%), Positives = 210/334 (62%), Gaps = 4/334 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+++H+  +  G+  +  V  +L+DMY KCG ++++H VFD+M +K +V  ++++  
Sbjct: 234 VQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIAS 293

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  E  +  + EM +    ID F+  IV+R CA LA+L   K+ H   +RR    D
Sbjct: 294 YALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTD 353

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           ++  +ALVD Y+K G ++ A  +F +M  +N+I+WN++I+G+  +G+GEEA+ +F+ M  
Sbjct: 354 IVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLR 413

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+HV+F+ VLSACS+ GL +RG + F SM++++++KP+  HY CMV+LLGR GLL+
Sbjct: 414 EGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLD 473

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI +A  +  +++W  LL AC    N  + +  A+ +  ++P+   +Y++L N+Y 
Sbjct: 474 EAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYN 533

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           + G+  +A  +   +K  G++ +P  +WIE   +
Sbjct: 534 SSGKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQ 567



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 131/238 (55%), Gaps = 5/238 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K V   ++  G   ++ V + ++ ++ KCGL+ ++ ++FD+M +K+  S   ++ G+  +
Sbjct: 137 KRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDS 196

Query: 66  GDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G+F     +F     E  +    +F  ++RA AGL  +++G+++H   ++R    D  + 
Sbjct: 197 GNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVS 256

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
            AL+D+Y+KCG ++ AH +F QMP +  + WNS+I+ +A +G  EEAL  + +M + G K
Sbjct: 257 CALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAK 316

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            DH +   V+  C+ +  ++  ++  A++ +       I     +VD   + G +E+A
Sbjct: 317 IDHFTISIVIRICARLASLEYAKQAHAALVRR-GYDTDIVANTALVDFYSKWGRMEDA 373



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQ 143
           ++  ++ AC GL ++R  K V   Y+  SG + D+ + + ++ ++ KCG +  A ++F +
Sbjct: 119 TYDALVSACVGLRSIRGVKRVF-NYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDE 177

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP +++ +W +MI GF  +G   EA  +F  M E        +F  ++ A + +GL+  G
Sbjct: 178 MPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVG 237

Query: 204 RKHFASMTKEYRIKPKIEHYNC-MVDLLGRAGLLEEAETLIEN 245
           R+  +   K  R        +C ++D+  + G +E+A  + + 
Sbjct: 238 RQIHSCALK--RGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQ 278


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 134/350 (38%), Positives = 202/350 (57%), Gaps = 38/350 (10%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV+ + +V  Y + G +  + ++FD M  ++++S + +L GY   GD E+  ++F EM 
Sbjct: 261 DVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMP 320

Query: 80  EIDLFSFG------------------------------------IVLRACAGLAALRLGK 103
           E ++FS+                                      VL ACA L AL LGK
Sbjct: 321 ERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGK 380

Query: 104 EVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
            VH  Y    G K  + + +AL+D+Y+KCG ++ A ++F  M +++LITWNSMI G A +
Sbjct: 381 WVHV-YAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATH 439

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
           G G +AL +F  M   G KPD ++FIGVL +C+H+GL++ G  +F SM  EY I P+IEH
Sbjct: 440 GCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEH 499

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
           Y CMVDL GRAGLL+ A   ++      D+ +W  LLGAC  ++N  +AE   +K++ L+
Sbjct: 500 YGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLE 559

Query: 283 PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           P    +YVLL N+Y  +GRW D  +++ LM+ +G KK+PG S IE N  +
Sbjct: 560 PKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSV 609



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 137/263 (52%), Gaps = 9/263 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G+E+H +VI  GL GN  V ++L+D+Y     +  ++++F  ML++N V+ ++++ GY 
Sbjct: 183 EGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYI 242

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
                    R+F    E D+  + I++     +  ++  +++      R    D +  + 
Sbjct: 243 LCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYR----DTMSWNT 298

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKP 182
           +++ YA  G V+   Q+F +MP RN+ +WN +I G+A NG   E LR F  M  +G   P
Sbjct: 299 MLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVP 358

Query: 183 DHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           +  + + VLSAC+ +G +D G+  H  + T  +  K  I   N ++D+  + GL+E A  
Sbjct: 359 NDATLVTVLSACARLGALDLGKWVHVYAATIGF--KGSIYVGNALIDMYSKCGLIENAME 416

Query: 242 LIENADCRHDSSLWEVLLGACTT 264
           + E+ D + D   W  ++    T
Sbjct: 417 VFESMDLK-DLITWNSMICGLAT 438



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 127/260 (48%), Gaps = 14/260 (5%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++V A++IT G   N  V  ++V  +     +  +  +FD          +A+ +GY   
Sbjct: 84  QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHN 143

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
             +  V+ +F +M+ +D+    F+F +VL++CA + A   G+E+HC+ I+     +  + 
Sbjct: 144 AFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVA 203

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + L+D+Y+    +  A+++F+ M  RN++ W SMISG+    R   A R+FD   E    
Sbjct: 204 TTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPE---- 259

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D V +  ++S    +G +   RK F +M   YR       +N M++     G +E  E 
Sbjct: 260 RDVVLWNIMVSGYIEIGDMKAARKLFDTM--PYR---DTMSWNTMLNGYANNGDVEACEQ 314

Query: 242 LIENADCRHDSSLWEVLLGA 261
           L E    R+  S W  L+G 
Sbjct: 315 LFEEMPERNVFS-WNGLIGG 333



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH    T+G  G++ V ++L+DMY KCGL++ +  VF+ M  K+ ++ ++++ G
Sbjct: 376 LDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICG 435

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F +M    E+ D  +F  VL +C  L  +  G       +       
Sbjct: 436 LATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAP 495

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            I     +VDL+ + G +D A +   +MP+  + + W +++
Sbjct: 496 QIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALL 536


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 197/335 (58%), Gaps = 3/335 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+EVH  +    +  N+ V ++L++MY KCG ++E++ +F ++  KN VS + ++ G
Sbjct: 376 LDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGG 435

Query: 62  YCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y Q       +++F +M++    D  +   VL ACAGLAAL  G+E+H   +R+    D+
Sbjct: 436 YSQNSLPNEALQLFLDMQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDL 495

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            +  ALVD+Y KCG +  A Q+F  +P +++I W  MI+G+  +G G+EA+  F+ M   
Sbjct: 496 HVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVA 555

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +P+  SF  +L AC+H GL+  G K F SM  E  I+PK+EHY CMVDLL R+G L  
Sbjct: 556 GIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSR 615

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   IE    + D+++W  LL  C    +  +AE+VA+ I EL+P+    YVLL NVY  
Sbjct: 616 AYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAE 675

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             +W +  KI+  +   G+K   G SWIE   K N
Sbjct: 676 AEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFN 710



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 159/287 (55%), Gaps = 21/287 (7%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            L  G+ +HA  +  G  G V+  ++L+DMY KCG ++ ++ VF KM +   VS ++++ 
Sbjct: 274 NLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIA 333

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            + + G     I +F EM+      D+++   V+ ACA   +L  G+EVH    + +   
Sbjct: 334 AHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGS 393

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ + +AL+++YAKCG ++ A+ IF Q+PV+N+++WN+MI G++QN    EAL++F DM 
Sbjct: 394 NLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM- 452

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNC-MVDLLGRAG 234
           +   KPD V+   VL AC+ +  +++GR+ H   + K Y       H  C +VD+  + G
Sbjct: 453 QKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDL---HVACALVDMYVKCG 509

Query: 235 LLEEAETLIENADCRHDSSLWEVLLG----------ACTTFRNAHVA 271
           LL  A+ L +    + D  LW V++           A +TF    VA
Sbjct: 510 LLVLAQQLFDMIP-KKDMILWTVMIAGYGMHGFGKEAISTFEKMRVA 555



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 152/289 (52%), Gaps = 7/289 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++++ K VH  V+ LG      V +SL+  Y KCG V+ +  +FD++  ++ VS ++++ 
Sbjct: 173 KVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMIS 232

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G    G   + +  F +M     ++D  +   VL ACA +  L LG+ +H   ++     
Sbjct: 233 GCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSG 292

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V+  + L+D+Y+KCG ++ A+++F++M    +++W S+I+   + G   EA+ +FD+M 
Sbjct: 293 GVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQ 352

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD  +   V+ AC+    +D+GR+   +  K+  +   +   N ++++  + G +
Sbjct: 353 SKGLRPDIYAVTSVVHACACSNSLDKGRE-VHNHIKKNNMGSNLPVSNALMNMYAKCGSM 411

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM-ELKPD 284
           EEA  +      ++  S W  ++G  +     + A ++   +  +LKPD
Sbjct: 412 EEANLIFSQLPVKNIVS-WNTMIGGYSQNSLPNEALQLFLDMQKQLKPD 459



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 134/276 (48%), Gaps = 15/276 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH+ + + G+  + V+ + LV MY  CG + +  R+FD +L       + L+  
Sbjct: 73  LEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSE 132

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRS-GCK 116
           Y + G++   + +F +M+E+    D ++F  VL+  A  A +R  K VH   ++   G  
Sbjct: 133 YAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSY 192

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + ++ S L+  Y KCG V+ A  +F ++  R++++WNSMISG   NG     L  F  M 
Sbjct: 193 NAVVNS-LIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQML 251

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G   D  + + VL AC+++G +  GR   A   K       +   N ++D+  + G L
Sbjct: 252 NLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKA-GFSGGVMFNNTLLDMYSKCGNL 310

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
             A  +           + E  + + T+   AHV E
Sbjct: 311 NGANEVF--------VKMGETTIVSWTSIIAAHVRE 338



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 12/218 (5%)

Query: 52  SVSSSALLQGYCQTGDFESVIRIFR--EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQY 109
           +V  +A +  +C+ GD  + +++    +  E++L ++  VL+ CA L +L  GK VH   
Sbjct: 24  TVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSII 83

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
                  D ++ + LV +Y  CG +    +IF  +    +  WN ++S +A+ G   E++
Sbjct: 84  SSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESV 143

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            +F+ M E G + D  +F  VL      G     +         Y +K     YN +V+ 
Sbjct: 144 GLFEKMQELGIRGDSYTFTCVLK-----GFAASAKVRECKRVHGYVLKLGFGSYNAVVNS 198

Query: 230 LGRA----GLLEEAETLIENADCRHDSSLWEVLLGACT 263
           L  A    G +E A  L +    R D   W  ++  CT
Sbjct: 199 LIAAYFKCGEVESARILFDELSDR-DVVSWNSMISGCT 235


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 132/333 (39%), Positives = 196/333 (58%), Gaps = 4/333 (1%)

Query: 5    GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            G  +H   I  GL  +V V  SLVDMY K G  + +  VF  M  KN V+ ++++  Y  
Sbjct: 870  GHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSW 929

Query: 65   TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             G  E  I +  ++ +    +D  S   VL A + +AAL  GK +H   IR     D+ +
Sbjct: 930  NGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQV 989

Query: 121  ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            E+AL+D+Y KCGC+ +A  IF  MP RNL+TWNSMI+G+  +G  EEA+R+F +M    T
Sbjct: 990  ENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSET 1049

Query: 181  KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             PD V+F+ ++++CSH G+++ G   F  M  EY ++P++EHY  +VDLLGRAG L++A 
Sbjct: 1050 APDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAY 1109

Query: 241  TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            + I       D S+W  LL AC   RN  + E VA  +++++P    +YV L N+Y  V 
Sbjct: 1110 SFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVE 1169

Query: 301  RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             W+ A  +R  MK  G+KK PG SWIE  ++++
Sbjct: 1170 MWDRAANLRASMKGRGLKKSPGCSWIEVKNRVD 1202



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 150/286 (52%), Gaps = 8/286 (2%)

Query: 5    GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            G+ VHA+VI   +  NV ++S+L+ MY KCG  +++  VF  M +++ V+  +++ G+CQ
Sbjct: 769  GRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQ 828

Query: 65   TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               F+  + +FR ME+     D      V+ A  GL  + LG  +H   I+R    DV +
Sbjct: 829  NRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFV 888

Query: 121  ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
              +LVD+Y+K G  + A  +F  MP +NL+ WNSMIS ++ NG  E ++ +   + + G 
Sbjct: 889  ACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGF 948

Query: 181  KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
              D VS   VL A S +  + +G+   A   +  +I   ++  N ++D+  + G L+ A+
Sbjct: 949  YLDSVSITTVLVAVSSVAALLKGKTLHAYQIR-LQIPSDLQVENALIDMYVKCGCLKYAQ 1007

Query: 241  TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPD 284
             + EN   R +   W  ++    +  N   A R+ K++   E  PD
Sbjct: 1008 LIFENMP-RRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPD 1052



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 136/256 (53%), Gaps = 17/256 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-----S 56
           L  G+ +HA ++T+GL  +  + +SL++MY KCGL+  + +VFDKM +    +      +
Sbjct: 457 LYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWN 516

Query: 57  ALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
            ++ GY + G FE  +  F  M+E+    D +S  IVL  C  L+    G+++H   IR 
Sbjct: 517 PVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRN 576

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRI 171
               D  +E+AL+ +Y+ C     A  +F ++  R N++ WN MI GF +NG  E++L +
Sbjct: 577 MFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLEL 636

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNC--MVD 228
           +        K    SF G  +ACSH  ++D GR+ H   +   ++  P    Y C  ++ 
Sbjct: 637 YSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDP----YVCTSLLT 692

Query: 229 LLGRAGLLEEAETLIE 244
           +  ++G +E+A+ + +
Sbjct: 693 MYAKSGSVEDAKKVFD 708



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 132/252 (52%), Gaps = 13/252 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH  VI +    +  V +SL+ MY K G V+++ +VFD++L K     +A++  
Sbjct: 665 LDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISA 724

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     + ++ +M+     +D F+   +L  C+ + +   G+ VH + I+RS   +
Sbjct: 725 FIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSN 784

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I+SAL+ +Y KCG  + A  +F  M  R+++ W SMI+GF QN R ++AL +F  M +
Sbjct: 785 VAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEK 844

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH---YNC-MVDLLGRA 233
            G K D      V+SA   +GL +    H   +   + IK  +E      C +VD+  + 
Sbjct: 845 EGVKADSDVMTSVISA--GLGLENVELGH---LIHGFAIKRGLESDVFVACSLVDMYSKF 899

Query: 234 GLLEEAETLIEN 245
           G  E AE +  +
Sbjct: 900 GFAESAEMVFSS 911



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 134/267 (50%), Gaps = 6/267 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-NSVSSSALLQGYC 63
           G+++H  +I     G+  +E++L+ MY  C    E+  +F K+  + N V+ + ++ G+ 
Sbjct: 566 GRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFV 625

Query: 64  QTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           + G +E  + ++     E  ++   SF     AC+    L  G++VHC  I+ +   D  
Sbjct: 626 ENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPY 685

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+ +YAK G V+ A ++F Q+  + +   N+MIS F  NGR  +AL +++ M  G 
Sbjct: 686 VCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGE 745

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           T  D  +   +LS CS +G  D GR   A + K   ++  +   + ++ +  + G  E+A
Sbjct: 746 TPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKR-SMQSNVAIQSALLTMYYKCGSTEDA 804

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFR 266
           +++      R   +   ++ G C   R
Sbjct: 805 DSVFYTMKERDVVAWGSMIAGFCQNRR 831



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 12/212 (5%)

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           ++   Q G +   + +  +     L    F+F  +L+ CA L+ L  G+ +H   +    
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQM-----PVRNLITWNSMISGFAQNGRGEEAL 169
             D  I ++L+++Y KCG +  A Q+F +M        ++  WN +I G+ + G  EE L
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVD 228
             F  M E G +PD  S   VL  C+ +     GR+ H   +   +   P +E    ++ 
Sbjct: 533 AQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLE--TALIG 590

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +        EA +L    + R +   W V++G
Sbjct: 591 MYSSCSRPMEAWSLFGKLENRSNIVAWNVMIG 622



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 84/151 (55%), Gaps = 7/151 (4%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L +GK +HA  I L +  ++ VE++L+DMY KCG +  +  +F+ M ++N V+ ++++ G
Sbjct: 968  LLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAG 1027

Query: 62   YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            Y   G+ E  +R+F+EM+      D  +F  ++ +C+    +  G  +  Q +R     +
Sbjct: 1028 YGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLF-QLMRIEYGVE 1086

Query: 118  VIIE--SALVDLYAKCGCVDFAHQIFLQMPV 146
              +E  +++VDL  + G +D A+     MP+
Sbjct: 1087 PRMEHYASVVDLLGRAGRLDDAYSFIRGMPI 1117


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 134/337 (39%), Positives = 201/337 (59%), Gaps = 5/337 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R   GK VH  VI  G   +V V SSLVDMY KCG + E+  VFD+M  +N VS S ++ 
Sbjct: 170 RCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIY 229

Query: 61  GYCQTGDFESVIRIFRE--MEEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q G+ E  +R+F+E  +E +D+  F+   V+R C     L LGK++H    + S   
Sbjct: 230 GYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDL 289

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + S+L+ LY+KCG ++ A+++F ++P++NL  WN+M+   AQ+   +EA  +F  M 
Sbjct: 290 SGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKME 349

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P+ ++F+ VL ACSH GL++ G+K+FA M K+Y I+P  +HY  MVDLLGRAG L
Sbjct: 350 NAGMRPNFITFLCVLYACSHAGLVEEGKKYFALM-KKYEIEPGTQHYASMVDLLGRAGKL 408

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA ++I+        S+W   +  C    N  +A   A K+ EL       +V+L N Y
Sbjct: 409 QEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAY 468

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A GR+ DA K R +++  GVKK  G SWIE  ++++
Sbjct: 469 AAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVH 505



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 141/276 (51%), Gaps = 10/276 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++HA +I  GL    +V   L++ Y K  L   S +VF++  +K+S + S+++  
Sbjct: 70  LLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISS 129

Query: 62  YCQTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q  +    I+ F  M   +L      F    +ACA L    +GK VHC  I+     D
Sbjct: 130 FAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVD 189

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S+LVD+YAKCG +  A  +F +MP RN+++W+ MI G+ Q G  EEA+R+F +   
Sbjct: 190 VFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALL 249

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G   +  +   V+  C    L++ G++ H       Y +   +   + ++ L  + GL+
Sbjct: 250 EGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVG--SSLISLYSKCGLI 307

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
           E A  + +    + +  +W  +L AC   ++AH  E
Sbjct: 308 EGAYRVFDEVPIK-NLGMWNAMLIACA--QHAHTKE 340


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 129/320 (40%), Positives = 195/320 (60%), Gaps = 14/320 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y K G +  + R+F+KM +KN V+ +A++ GY +    E  +++FR M 
Sbjct: 130 SVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTM- 188

Query: 80  EIDLFSFGI---------VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
                 FGI          L  C+ L+AL+LG++VH    +   C D    ++L+ +Y K
Sbjct: 189 ----VGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCK 244

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
           CG ++   ++F+Q+P R+++TWN+MISG+AQ+G G++AL +FD+M E G KPD ++F+ V
Sbjct: 245 CGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAV 304

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
           L AC+H G  D G K+F SM K+Y +  K +HY CMVDLLGRAG L EA  LIE    + 
Sbjct: 305 LMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKP 364

Query: 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310
            ++++  LLGAC   +N  +AE  ++K++ L P     YV L NVY A  RW+   ++R 
Sbjct: 365 HAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRK 424

Query: 311 LMKYSGVKKMPGKSWIEANS 330
            MK   V K PG SWIE  S
Sbjct: 425 SMKSCKVVKTPGYSWIEVKS 444



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 134/290 (46%), Gaps = 20/290 (6%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +LK+ +E+  K+       + V  ++++  Y +   ++ +   F+ M  K++ S + ++ 
Sbjct: 22  KLKEAQELFVKIPE----PDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMIT 77

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRA---CAGL-AALRLGKEVHCQYIRRSGCK 116
           G+ Q    +    +F  M   ++ ++  ++     C  L +AL+L          ++  K
Sbjct: 78  GFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKL--------FEKAPFK 129

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V+  +A++  Y K G +  A ++F +MP +NL+TWN+MI+G+ +N R E+ +++F  M 
Sbjct: 130 SVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMV 189

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P+  +    L  CS +  +  GR+    + K   +         ++ +  + G+L
Sbjct: 190 GFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKS-PLCDDTTAGTSLISMYCKCGVL 248

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           E+   L      R D   W  ++           A  +  +++E  +KPD
Sbjct: 249 EDGWKLFVQVP-RRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPD 297



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 10/163 (6%)

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   S L  +  K G +  A ++F+++P  + +++N+M+S + +N   E A   F+DM  
Sbjct: 7   VTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDM-- 64

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
                D  S+  +++  +    +D+ R  F  M  +      +  +N M+      G L+
Sbjct: 65  --PIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTK-----NVVTWNAMISGYVECGDLD 117

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
            A  L E A  +   + W  ++          +AER+ +K+ E
Sbjct: 118 SALKLFEKAPFKSVVA-WTAMITGYMKLGRIGLAERLFEKMPE 159


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 207/364 (56%), Gaps = 36/364 (9%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++VH +++  G   NVV+ SS++D Y KCGL+ ++ ++FD+M  ++ ++ + ++ GY + 
Sbjct: 212 RQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKW 271

Query: 66  GDFESVIRIFREMEE-----------------------------------IDLFSFGIVL 90
           GD +S   +F EM E                                    D F+F   L
Sbjct: 272 GDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCL 331

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NL 149
            ACA +A+L+ GK++H   +R +   + I+ SAL+D+Y+KCG +    ++F  M  + ++
Sbjct: 332 CACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDV 391

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           + WN++IS  AQ+G GEEA+++ DDM   G KPD ++F+ +L+ACSH GL+ +G   F S
Sbjct: 392 VLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFES 451

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           M+ +Y I P  EHY C++DLLGRAG  EE    +E    + D  +W  LLG C    +  
Sbjct: 452 MSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIE 511

Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           +  + A++++EL+P    +YVLL ++Y  +GRW    K+R LM    VKK    SW+E  
Sbjct: 512 LGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIE 571

Query: 330 SKLN 333
           +K++
Sbjct: 572 NKVH 575



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 142/295 (48%), Gaps = 37/295 (12%)

Query: 3   KQGKEVHA-KVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           K GKEV A KV       N+   ++++  Y K G++  + ++FDKM +K+ VS + ++  
Sbjct: 107 KCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIA 166

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G ++  +R + E  ++ +    FSF  VL  C  L  + L ++VH Q +      +
Sbjct: 167 HAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSN 226

Query: 118 VIIESALVDLYAKCGCV-------------------------------DFAHQIFLQMPV 146
           V++ S+++D Y KCG +                                 A+++F++MP 
Sbjct: 227 VVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPE 286

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +N ++W ++ISG+A+NG G +AL +F  M     +PD  +F   L AC+ +  +  G++ 
Sbjct: 287 KNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQI 346

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            A + +    +P     + ++D+  + G L     + +    + D  LW  ++ A
Sbjct: 347 HAYLLR-INFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISA 400



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 74/130 (56%), Gaps = 7/130 (5%)

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK--DVIIESALVDLYAKCGCVDFAH 138
           +D  +   +L+ CA   ALR GK VH  +++ +G K     + + L+++YAKCG    A 
Sbjct: 57  LDSRTLASLLQHCADSRALREGKRVHL-HLKLTGLKRPGTFLSNHLINMYAKCGKEVEAR 115

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F +M  RNL +WN+M+SG+A+ G  + A ++FD M E     D VS+  ++ A +  G
Sbjct: 116 KVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPE----KDVVSWNTMVIAHAQCG 171

Query: 199 LIDRGRKHFA 208
             D   + ++
Sbjct: 172 YWDEALRFYS 181



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 15/166 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-NSVSSSALLQ 60
           LK GK++HA ++ +    N +V S+L+DMY KCG +    +VFD M  K + V  + ++ 
Sbjct: 340 LKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIIS 399

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
              Q G  E  I++  +M     + D  +F ++L AC+    ++ G      +     C 
Sbjct: 400 ALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQG----LNFFESMSCD 455

Query: 117 DVIIESA-----LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
             I+ S      L+DL  + GC +       +MP + +   WN+++
Sbjct: 456 YGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALL 501


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 209/330 (63%), Gaps = 5/330 (1%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+HA+ I      +  V ++L+D Y K G VDE+ +VF ++ +K+ V+ SA++ GY Q G
Sbjct: 27  EMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIG 86

Query: 67  DFESVIRIFREM--EEI--DLFSFGIVLRACAG-LAALRLGKEVHCQYIRRSGCKDVIIE 121
           D E  +RIF +M  E+I  + ++F  ++ ACA   A +  GK++H   I+      + + 
Sbjct: 87  DTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVS 146

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SAL+ +Y+K G ++ A ++F +   R+L++WNS+ISG+AQ+G G +AL +F++M     +
Sbjct: 147 SALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLE 206

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D V+FIGV+SAC+H GL + G+++F  M K++ I+P++EHY+CMVDL GRAG+L +A  
Sbjct: 207 MDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAME 266

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           +I        +++W  LL A    RN  V +  A K++ L+P    SYVLL N+Y +VG 
Sbjct: 267 IINEMPFPASANVWRTLLAASCIHRNLEVGKLAADKLISLQPQNPASYVLLTNMYASVGN 326

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           W +  K+R LM+   VKK+ G SWIE  +K
Sbjct: 327 WKERAKVRKLMEEKKVKKVAGYSWIEVKNK 356



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 15/154 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QGK++HA  I       + V S+L+ MY K G ++ +  VF +  +++ VS ++++ G
Sbjct: 124 VEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISG 183

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F EM+    E+D  +F  V+ AC        G+      +     KD
Sbjct: 184 YAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMV-----KD 238

Query: 118 VIIE------SALVDLYAKCGCVDFAHQIFLQMP 145
             IE      S +VDLY + G +  A +I  +MP
Sbjct: 239 HHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMP 272


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 128/331 (38%), Positives = 202/331 (61%), Gaps = 5/331 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH  +I  G  G++ VE++L+D Y KCG +  S RVFD M +++ +S ++++  Y Q G 
Sbjct: 283 VHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGM 342

Query: 68  FESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
               + IF  M +      +  +   VL ACA   + RLGK +H Q I+     +V + +
Sbjct: 343 STESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGT 402

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           +++D+Y KCG V+ A + F +M  +N+ +W++M++G+  +G  +EAL +F +M   G KP
Sbjct: 403 SIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKP 462

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           ++++F+ VL+ACSH GL++ G   F +M+ E+ ++P +EHY CMVDLLGRAG L+EA  L
Sbjct: 463 NYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDL 522

Query: 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302
           I+    R D  +W  LLGAC   +N  + E  A+K+ EL P     YVLL N+Y   GRW
Sbjct: 523 IKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRW 582

Query: 303 NDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            D  ++R LMK SG+ K PG S ++   +++
Sbjct: 583 EDVERMRILMKNSGLVKPPGFSLVDIKGRVH 613



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 119/210 (56%), Gaps = 13/210 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++ H + +  G   ++ V S+LVDMY KCG + ++  +FD++  +N VS ++++ G
Sbjct: 168 LHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITG 227

Query: 62  YCQTGDFESVIRIFRE--MEE----------IDLFSFGIVLRACAGLAALRLGKEVHCQY 109
           Y Q  D    + +F+E  +EE          +D  +   VL AC+ ++   + + VH   
Sbjct: 228 YVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFL 287

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           I+R    D+ +E+ L+D YAKCG +  + ++F  M  R++I+WNS+I+ +AQNG   E++
Sbjct: 288 IKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESM 347

Query: 170 RIFDDMT-EGGTKPDHVSFIGVLSACSHMG 198
            IF  M  +G    + V+   VL AC+H G
Sbjct: 348 EIFHRMVKDGEINYNAVTLSAVLLACAHSG 377



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 93/166 (56%), Gaps = 13/166 (7%)

Query: 43  VFDKMLKKNSVSS-SALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLA 97
           +F+K + K +V S ++++    ++GD    +R F  M ++ L     +F   +++C+ L 
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
            L  G++ H Q +      D+ + SALVD+Y+KCG +  A  +F ++  RN+++W SMI+
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226

Query: 158 GFAQNGRGEEALRIFDD--MTEGGTKP------DHVSFIGVLSACS 195
           G+ QN     AL +F +  + E G++       D ++ + VLSACS
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACS 272



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 12/161 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H +VI +GL  NV V +S++DMY KCG V+ + + FD+M +KN  S SA++ GY  
Sbjct: 382 GKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGM 441

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLG----KEVHCQYIRRSGCK 116
            G  +  + +F EM     + +  +F  VL AC+    L  G    K +  ++    G +
Sbjct: 442 HGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVE 501

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
                  +VDL  + G +  A  +   M +R + + W +++
Sbjct: 502 HY---GCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALL 539



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 4/133 (3%)

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-H 206
           N+ +WNS+I+  A++G   EALR F  M +   KP+  +F   + +CS +  +  GR+ H
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 175

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
             ++   +  +P +   + +VD+  + G L +A TL +    R+  S W  ++       
Sbjct: 176 QQALI--FGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVS-WTSMITGYVQND 232

Query: 267 NAHVAERVAKKIM 279
           +AH A  + K+ +
Sbjct: 233 DAHRALLLFKEFL 245


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 205/335 (61%), Gaps = 7/335 (2%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K+  E+  K+I+  +     V +SL+ MY + G ++++ + FD + +KN VS +A++ GY
Sbjct: 44  KEAIELFCKMISASVN---CVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGY 100

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            +    E    +F E+ +    I  F+F  +L   A + A+  G+++H + ++     + 
Sbjct: 101 AKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQ 160

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            I +AL+ +Y++CG ++ A Q+F +M  RN+I+W SMI+GFA++G    AL +F  M E 
Sbjct: 161 CICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLET 220

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           GTKP+ ++++ VLSACSH+G+I  G+KHF SM KE+ I P++EHY CMVDLLGR+GLL E
Sbjct: 221 GTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVE 280

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   I +     D+ +W  LLGAC    N  +    A+ I+E +PD   +Y+LL N++ +
Sbjct: 281 AMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHAS 340

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            G+W D  KIR  MK   + K  G SWIE  ++++
Sbjct: 341 AGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVH 375



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 143/295 (48%), Gaps = 44/295 (14%)

Query: 30  MYGKC---GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSF 86
           MY KC   G VD+S +VF++M + N +S +A++  Y Q+G+ +         E I+LF  
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDK--------EAIELF-- 50

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
                 C  ++A      V+C            + ++L+ +YA+ G ++ A + F  +  
Sbjct: 51  ------CKMISA-----SVNC------------VGNSLISMYARSGRMEDARKAFDILFE 87

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK- 205
           +NL+++N+++ G+A+N + EEA  +F+++ + G      +F  +LS  + +G + +G + 
Sbjct: 88  KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 147

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           H   +   Y+    I   N ++ +  R G +E A  +    + R+  S W  ++      
Sbjct: 148 HGRLLKGGYKSNQCI--CNALISMYSRCGNIEAAFQVFNEMEDRNVIS-WTSMITGFAKH 204

Query: 266 RNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFK-IRTLMKYSGV 317
             A  A  +  K++E   KP+  ++YV + +    VG  ++  K   ++ K  G+
Sbjct: 205 GFATRALEMFHKMLETGTKPN-EITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 258


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 204/361 (56%), Gaps = 37/361 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKC------------------------------ 34
           G +VH +V+  G+  ++ VE++LVDMY +C                              
Sbjct: 142 GMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLAR 201

Query: 35  -GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
            G VDE+  +FD+M ++++VS +A++ GY     F   + +FREM+      D F+   V
Sbjct: 202 LGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSV 261

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           + ACA L AL +G+ V   Y+ R G K D  + +AL+D+Y+KCG ++ A  +F  M  R+
Sbjct: 262 ITACAQLGALEMGEWVRV-YMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRD 320

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
             TW ++I G A NG  EEA+ +F  M      PD V+FIGVL+AC+H GL+D+GR+ F 
Sbjct: 321 KFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFL 380

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
           SM + Y I P + HY C++DLLGRAG + EA   I+      +S++W  LL AC    N+
Sbjct: 381 SMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNS 440

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            + E VA++++EL P+  + Y+LL N+Y    RW D  ++R  +   G+KK PG S IE 
Sbjct: 441 EIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEM 500

Query: 329 N 329
           +
Sbjct: 501 D 501



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 39/292 (13%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            + VHA V+ LG+  N  V SSLV  Y   G    +  +  +      V+ +AL+ G+ +
Sbjct: 42  ARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGEC--DTPVAWNALISGHNR 99

Query: 65  TGDFE----SVIRIFREMEEIDLFSFGIVLRACA-GLAALRLGKEVHCQYIRRSGCKDVI 119
            G F     S + + R        ++  VL AC  G   + LG +VH + +      D+ 
Sbjct: 100 GGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLR 159

Query: 120 IESALVDLYAKC-------------------------------GCVDFAHQIFLQMPVRN 148
           +E+ALVD+YA+C                               G VD A  +F +MP R+
Sbjct: 160 VENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERD 219

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
            ++W +MI G+    R  EAL +F +M       D  + + V++AC+ +G ++ G     
Sbjct: 220 TVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRV 279

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            M+++  IK      N ++D+  + G +E A  + +    R   +   ++LG
Sbjct: 280 YMSRQ-GIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILG 330



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ V   +   G+  +  V ++L+DMY KCG ++ +  VF  M  ++  + +A++ G
Sbjct: 271 LEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILG 330

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CK 116
               G  E  I +F  M    E  D  +F  VL AC     +  G+E     I       
Sbjct: 331 LAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAP 390

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGE 166
           +V+    ++DL  + G +  A     QMP+  N   W ++++    +G  E
Sbjct: 391 NVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSE 441



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 24/247 (9%)

Query: 82  DLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
           D ++F  +L    RA  G  +    + VH   +R    ++  + S+LV  Y   G    A
Sbjct: 18  DAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAA 77

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH- 196
             +  +      + WN++ISG  + GR  E+   F DM   G  P  V+++ VLSAC   
Sbjct: 78  RALVGE--CDTPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKG 135

Query: 197 -----MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
                +G+   GR   + +  + R++      N +VD+      +  A  + +    R  
Sbjct: 136 TRDVLLGMQVHGRVVGSGVLPDLRVE------NALVDMYAECADMGSAWKVFDGMQVRSV 189

Query: 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH-LSYVLLDNVYRAVGRWNDAFKIRT 310
            S W  LL      R   V E  A+ + +  P+   +S+  + + Y    R+ +A ++  
Sbjct: 190 VS-WTSLLSGLA--RLGQVDE--ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFR 244

Query: 311 LMKYSGV 317
            M+YS V
Sbjct: 245 EMQYSNV 251


>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 140/334 (41%), Positives = 206/334 (61%), Gaps = 8/334 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K GK  HA ++T G   N  + SSL+ MY KCG V+++ R+FD M  +N+V  ++++ G
Sbjct: 212 MKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISG 271

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I++FR+M+    ++D  +   V+ +C  + AL LG+ VH         KD
Sbjct: 272 YTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKD 331

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + ++++L+D+Y+KCG +  A+ IF  M  R+  +W ++I GFA NG   EAL +F  M E
Sbjct: 332 ISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSW-TVIMGFAANGLSGEALDLFAQMEE 390

Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            GG  P+ ++F+GVL++CSH GL+++G +HF  M+  Y I P+IEHY CMVDLLGRA LL
Sbjct: 391 EGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKLL 450

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE  I+      D+ +W  LL AC T     +AE VA++I  L+P+     VLL  VY
Sbjct: 451 AEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCGGDVLLSTVY 510

Query: 297 RAVGRWNDAFKIRTLMKYSGVK-KMPGKSWIEAN 329
               RW DA K+RT + YSG K K PG S+IE +
Sbjct: 511 ATTSRWVDANKVRTGI-YSGRKTKQPGCSFIEVD 543



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 8/262 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALLQGY 62
           G ++HA  + LGL  +  V ++L++MY  C     +  V D   K   ++VS + ++ GY
Sbjct: 112 GAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGY 171

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G     ++ F +M +    +D  +    L ACA    +++GK  H   +      + 
Sbjct: 172 IHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINC 231

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + S+L+ +YAKCG V+ A +IF  MP RN + W SMISG+ Q G+ +EA+++F DM   
Sbjct: 232 YMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIA 291

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G K D  +   V+S+C  MG +D GR +  +    + +   I   N ++D+  + G +++
Sbjct: 292 GVKVDDATISTVVSSCGQMGALDLGR-YVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKK 350

Query: 239 AETLIENADCRHDSSLWEVLLG 260
           A  +      + D+  W V++G
Sbjct: 351 AYDIFCGM-VKRDNFSWTVIMG 371


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 190/307 (61%), Gaps = 7/307 (2%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL- 83
           ++++  + +CG+V+ +   FD+M +++ +S SA++ GY Q G F   + IF +M++  + 
Sbjct: 240 NAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIR 299

Query: 84  ---FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
              F    VL ACA L AL  G+ +H    R S   D ++ ++LVD+YAKCG +D A ++
Sbjct: 300 PRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEV 359

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F +M  + + +WN+MI G A +GR E+A+ +F  M      P+ ++F+GVL+AC+H GL+
Sbjct: 360 FEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLV 416

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            +G   F SM KEY ++P+IEHY C+VDLLGRAGLL EAE ++ +       ++W  LLG
Sbjct: 417 QKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLG 476

Query: 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
           AC    N  + ERV K ++EL+P     Y LL N+Y   GRW +  ++R LMK  G+K  
Sbjct: 477 ACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTT 536

Query: 321 PGKSWIE 327
           PG S I+
Sbjct: 537 PGTSIID 543



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 141/352 (40%), Gaps = 76/352 (21%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGL-----VDESHRVFDKMLKKNSVSSSALLQ 60
           K+ HA ++  G   +  +  SLV  Y           + S RVFD + K N    + +++
Sbjct: 51  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR----- 111
              +  +    I ++ EM       + +++  VL+AC+    +  G +VH   ++     
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 170

Query: 112 ---------------------------RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
                                      + G  D +  +A++D Y + G V+ A ++F  M
Sbjct: 171 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 230

Query: 145 PVRNLI-TWNSMISGFAQNGRGE-------------------------------EALRIF 172
           P R++I TWN+MISGF++ G  E                               EAL IF
Sbjct: 231 PDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIF 290

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
             M +   +P       VLSAC+++G +D+GR    +  K   I+        +VD+  +
Sbjct: 291 HQMQKEKIRPRKFVLPSVLSACANLGALDQGR-WIHTYAKRNSIQLDGVLGTSLVDMYAK 349

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
            G ++ A  + E    +  SS W  ++G       A  A  +  K M++ P+
Sbjct: 350 CGRIDLAWEVFEKMSNKEVSS-WNAMIGGLAMHGRAEDAIDLFSK-MDINPN 399



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 7/175 (4%)

Query: 2   LKQGKEVH--AKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           L QG+ +H  AK  ++ L G  V+ +SLVDMY KCG +D +  VF+KM  K   S +A++
Sbjct: 318 LDQGRWIHTYAKRNSIQLDG--VLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMI 375

Query: 60  QGYCQTGDFESVIRIFREME-EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            G    G  E  I +F +M+   +  +F  VL ACA    ++ G  +     +  G +  
Sbjct: 376 GGLAMHGRAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQ 435

Query: 119 IIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRI 171
           I     +VDL  + G +  A ++   +P       W +++    ++G  E   R+
Sbjct: 436 IEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERV 490


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 129/322 (40%), Positives = 199/322 (61%), Gaps = 7/322 (2%)

Query: 18  CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFRE 77
            G+V + +++++ Y K G +  +  +F++M ++N +S +AL+ GY Q       I +FR 
Sbjct: 145 TGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRR 204

Query: 78  ME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG--CKDVIIESALVDLYAKC 131
           M+    E D  +  + L ACA L AL LG+ +   YI R G    ++ + +AL+D+YAK 
Sbjct: 205 MQLENVEPDEIAMLVALTACARLGALELGEWIR-HYIDRLGLLTTNIPLNNALIDMYAKS 263

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           G +  A Q+F  M  + +ITW +MI+G A +G G EAL +F  M     KP+ ++FI +L
Sbjct: 264 GDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAIL 323

Query: 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           SACSH+GL+  GR +F  M   Y I+PKIEHY CM+DLLGRAG L+EA+TL+       +
Sbjct: 324 SACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPN 383

Query: 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311
           + +W  LL AC T  +  + E   + ++EL+PD   +Y LL N+Y + GRWN++  +R +
Sbjct: 384 AVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGRWNESRVVRKV 443

Query: 312 MKYSGVKKMPGKSWIEANSKLN 333
           M  +GVKKMPG S IE N++++
Sbjct: 444 MWDAGVKKMPGGSLIEVNNRVH 465



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 100/203 (49%), Gaps = 39/203 (19%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIR--------------------RSGC------ 115
           D +SF   L+A    ++++ G+++H Q IR                     SGC      
Sbjct: 77  DSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARK 136

Query: 116 ---------KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
                     DV + +A+++ YAK G +  A  +F +MP RN+I+W ++I+G+AQ  R  
Sbjct: 137 MFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPH 196

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR--KHFASMTKEYRIKPKIEHYN 224
           +A+ +F  M     +PD ++ +  L+AC+ +G ++ G   +H+  + +   +   I   N
Sbjct: 197 DAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHY--IDRLGLLTTNIPLNN 254

Query: 225 CMVDLLGRAGLLEEAETLIENAD 247
            ++D+  ++G ++ A  + EN +
Sbjct: 255 ALIDMYAKSGDIKSALQVFENMN 277



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 9/198 (4%)

Query: 2   LKQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L+ G+ +   +  LGL   N+ + ++L+DMY K G +  + +VF+ M  K  ++ + ++ 
Sbjct: 230 LELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIA 289

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G    G     + +F  ME   +     +F  +L AC+ +  ++ G+    + I R G +
Sbjct: 290 GLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIE 349

Query: 117 DVIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDD 174
             I     ++DL  + G +  A  +  QMP   N + W S+++    +G  E        
Sbjct: 350 PKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQH 409

Query: 175 MTEGGTKPDHVSFIGVLS 192
           + E   +PD+     +LS
Sbjct: 410 LLE--LEPDNSGNYALLS 425


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  253 bits (647), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 210/347 (60%), Gaps = 17/347 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+V A    +G   N+ V++S + +Y + G  DE+ R+F++M   + ++ +A++ G
Sbjct: 297 LNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISG 356

Query: 62  YCQTGD------------FESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEV 105
           Y Q  D            F++ + IFR+++    + DLF+F  +L  C+ + AL  G+++
Sbjct: 357 YAQIMDSAKDDLQARSRGFQA-LTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQI 415

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
           H Q I+     DV++ SALV++Y KCGC+  A++ FL+MP R  +TW SMISG++Q+G+ 
Sbjct: 416 HAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQP 475

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225
           +EA+++F++M   G +P+ ++F+ +LSACS+ GL++    +F  M KEY I+P ++HY C
Sbjct: 476 QEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGC 535

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285
           M+D+  R G +E+A + I+      + ++W  L+  C +  N  +A   A K++ELKP  
Sbjct: 536 MIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKG 595

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
             +Y+LL N+Y +  RW D  ++R LMK   V  +  +SWI    K+
Sbjct: 596 IETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKV 642



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 128/265 (48%), Gaps = 11/265 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   + VH  +   G   ++ V +SLV+ Y +C    ++ R+FD M ++N V+ +AL+ G
Sbjct: 94  LGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTG 153

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y         + +F EM E+      ++ G  L AC     + LGK+VH   I+      
Sbjct: 154 YTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESI 213

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE-ALRIFDDMT 176
             + ++L  LYAK G +D A + F ++P +N+ITW +MIS  A++    E  + +F DM 
Sbjct: 214 TSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDML 273

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+  +   V+S C     ++ G K   + + +   +  +   N  + L  R G  
Sbjct: 274 MDGVMPNEFTLTSVMSLCGTRLDLNLG-KQVQAFSFKIGCETNLPVKNSTMYLYLRKGET 332

Query: 237 EEAETLIENADCRHDSSL--WEVLL 259
           +EA  L E  +   D+S+  W  ++
Sbjct: 333 DEAMRLFEQME---DASIITWNAMI 354



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 128/252 (50%), Gaps = 19/252 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH   I  G      + +SL  +Y K G +D + R F ++ +KN ++ + ++    +
Sbjct: 198 GKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAE 257

Query: 65  TGD-FESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DV 118
             +  E  + +F +M       + F+   V+  C     L LGK+V   +  + GC+ ++
Sbjct: 258 DEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQA-FSFKIGCETNL 316

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-----------NGRGEE 167
            ++++ + LY + G  D A ++F QM   ++ITWN+MISG+AQ             RG +
Sbjct: 317 PVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQ 376

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
           AL IF D+     KPD  +F  +LS CS M  +++G +  A   K   +   + + + +V
Sbjct: 377 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVN-SALV 435

Query: 228 DLLGRAGLLEEA 239
           ++  + G +++A
Sbjct: 436 NMYNKCGCIQDA 447



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 1/173 (0%)

Query: 67  DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVD 126
           D +  + +  E + +    +  +L  C    +L   + VH    +     D+ + ++LV+
Sbjct: 62  DVQEAMTMLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVN 121

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
            Y +C     A ++F  MP RN++TW ++++G+  N +    L +F +M E G  P H +
Sbjct: 122 AYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYT 181

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
               L+AC     +D G++      K Y  +      N +  L  + G L+ A
Sbjct: 182 LGATLNACLASCDVDLGKQVHGYAIK-YGAESITSMGNSLCSLYAKLGSLDSA 233


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  253 bits (647), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 210/347 (60%), Gaps = 17/347 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+V A    +G   N+ V++S + +Y + G  DE+ R+F++M   + ++ +A++ G
Sbjct: 297 LNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISG 356

Query: 62  YCQTGD------------FESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEV 105
           Y Q  D            F++ + IFR+++    + DLF+F  +L  C+ + AL  G+++
Sbjct: 357 YAQIMDSAKDDLQARSRGFQA-LTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQI 415

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
           H Q I+     DV++ SALV++Y KCGC+  A++ FL+MP R  +TW SMISG++Q+G+ 
Sbjct: 416 HAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQP 475

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225
           +EA+++F++M   G +P+ ++F+ +LSACS+ GL++    +F  M KEY I+P ++HY C
Sbjct: 476 QEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGC 535

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285
           M+D+  R G +E+A + I+      + ++W  L+  C +  N  +A   A K++ELKP  
Sbjct: 536 MIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKG 595

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
             +Y+LL N+Y +  RW D  ++R LMK   V  +  +SWI    K+
Sbjct: 596 IETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKV 642



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 129/265 (48%), Gaps = 11/265 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   + VH  +   G   ++ V +SLV+ Y +CG   ++ R+FD M ++N V+ +AL+ G
Sbjct: 94  LGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTG 153

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y         + +F EM E+      ++ G  L AC     + LGK+VH   I+      
Sbjct: 154 YTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESI 213

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE-ALRIFDDMT 176
             + ++L  LYAK G +D A + F ++P +N+ITW +MIS  A++    E  L +F DM 
Sbjct: 214 TSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDML 273

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+  +   V+S C     ++ G K   + + +   +  +   N  + L  R G  
Sbjct: 274 MDGVMPNEFTLTSVMSLCGTRLDLNLG-KQVQAFSFKIGCETNLPVKNSTMYLYLRKGET 332

Query: 237 EEAETLIENADCRHDSSL--WEVLL 259
           +EA  L E  +   D+S+  W  ++
Sbjct: 333 DEAMRLFEQME---DASIITWNAMI 354



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 128/252 (50%), Gaps = 19/252 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH   I  G      + +SL  +Y K G +D + R F ++ +KN ++ + ++    +
Sbjct: 198 GKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAE 257

Query: 65  TGD-FESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DV 118
             +  E  + +F +M       + F+   V+  C     L LGK+V   +  + GC+ ++
Sbjct: 258 DEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQA-FSFKIGCETNL 316

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-----------NGRGEE 167
            ++++ + LY + G  D A ++F QM   ++ITWN+MISG+AQ             RG +
Sbjct: 317 PVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQ 376

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
           AL IF D+     KPD  +F  +LS CS M  +++G +  A   K   +   + + + +V
Sbjct: 377 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVN-SALV 435

Query: 228 DLLGRAGLLEEA 239
           ++  + G +++A
Sbjct: 436 NMYNKCGCIQDA 447



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 1/181 (0%)

Query: 59  LQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           ++   +T D +  + +  E + +    +  +L  C  + +L   + VH    +     D+
Sbjct: 54  MEAPLRTLDVQEAMTMLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADM 113

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + ++LV+ Y +CG    A ++F  MP RN++TW ++++G+  N +    L +F +M E 
Sbjct: 114 FVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEM 173

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  P H +    L+AC     +D G++      K Y  +      N +  L  + G L+ 
Sbjct: 174 GRYPSHYTLGATLNACLASCDVDLGKQVHGYAIK-YGAESITSMGNSLCSLYAKLGSLDS 232

Query: 239 A 239
           A
Sbjct: 233 A 233


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  253 bits (647), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 124/332 (37%), Positives = 208/332 (62%), Gaps = 5/332 (1%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++HA  I   +  N  V ++L+ +Y KC  + ++ ++F+ M +KN+V+ S+++ GY Q G
Sbjct: 165 QLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNG 224

Query: 67  DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             E  + IFR  +    + D F     + ACAGLA L  GK+VH    +     ++ + S
Sbjct: 225 FHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSS 284

Query: 123 ALVDLYAKCGCVDFAHQIFLQ-MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +L+D+YAKCGC+  A+ +F   + VR+++ WN+MISGFA++ R  EA+ +F+ M + G  
Sbjct: 285 SLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFF 344

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD V+++ VL+ACSHMGL + G+K+F  M +++ + P + HY+CM+D+LGRAGL+ +A  
Sbjct: 345 PDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYD 404

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           LIE       SS+W  LL +C  + N   AE  AK + E++P+   +++LL N+Y A  +
Sbjct: 405 LIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKK 464

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           W++  + R L++ + V+K  G SWIE  +K++
Sbjct: 465 WDEVARARKLLRETDVRKERGTSWIEIKNKIH 496



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 154/314 (49%), Gaps = 8/314 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+  HA++I +GL  +++  + L++MY KC LVD + + F++M  K+ VS + ++    Q
Sbjct: 62  GRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQ 121

Query: 65  TGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             +     + +I++ RE    + F+   VL  CA   A+    ++H   I+ +   +  +
Sbjct: 122 NAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFV 181

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+ +YAKC  +  A Q+F  MP +N +TW+SM++G+ QNG  EEAL IF +    G 
Sbjct: 182 GTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGF 241

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D       +SAC+ +  +  G K   +++ +      I   + ++D+  + G + EA 
Sbjct: 242 DQDPFMISSAVSACAGLATLIEG-KQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAY 300

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRA 298
            + +         LW  ++        A  A  + +K+ +    PD  ++YV + N    
Sbjct: 301 LVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPD-DVTYVCVLNACSH 359

Query: 299 VGRWNDAFKIRTLM 312
           +G   +  K   LM
Sbjct: 360 MGLHEEGQKYFDLM 373



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 59/107 (55%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ CA   +   G+  H Q IR     D++  + L+++Y+KC  VD A + F +MPV++
Sbjct: 49  LLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKS 108

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           L++WN++I    QN    EAL++   M   GT  +  +   VL  C+
Sbjct: 109 LVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCA 155



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 11/214 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS-VSSSALLQ 60
           L +GK+VHA     G   N+ V SSL+DMY KCG + E++ VF  +L+  S V  +A++ 
Sbjct: 261 LIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMIS 320

Query: 61  GYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+ +       + +F +M++   F    ++  VL AC+ +     G++     +R+    
Sbjct: 321 GFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLS 380

Query: 117 DVIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISGFAQNGR---GEEALRI 171
             ++  S ++D+  + G V  A+ +  +MP     + W S+++     G     E A + 
Sbjct: 381 PSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKY 440

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             +M E     +H+    + +A      + R RK
Sbjct: 441 LFEM-EPNNAGNHILLANIYAANKKWDEVARARK 473


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  253 bits (646), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 209/344 (60%), Gaps = 17/344 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+V      +G   N+ V++S + +Y + G  +E+ R+F++M   + ++ +A++ G+ Q
Sbjct: 300 GKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQ 359

Query: 65  TGD------------FESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQ 108
             D            F++ ++IFR++     + DLF+F  +L  C+ + AL  G+++H Q
Sbjct: 360 IMDSAKDDLHARSRGFQA-LKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQ 418

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
            I+     DV++ SALV++Y KCGC+++A + F++MP R L+TW SMISG++Q+GR  +A
Sbjct: 419 TIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDA 478

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           +++F+DM   G KP+ ++F+ +LSACS+ GL++   ++F  M  EY I+P ++HY CM+D
Sbjct: 479 IQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMID 538

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288
           +  R G L++A   I+      + ++W  L+  C +  N  +A   A +++ELKP    +
Sbjct: 539 MFVRLGRLDDAYAFIKRKGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVVET 598

Query: 289 YVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           YVLL N+Y + GRW D  ++R L K+  +  +  +SWI    K+
Sbjct: 599 YVLLLNMYISTGRWRDVARVRKLSKHEDLGILRDRSWITIRDKV 642



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 104/198 (52%), Gaps = 5/198 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K +H  ++  G   ++ V +SLV++Y +CG   ++  +FD+M +KN V+ +AL+ G
Sbjct: 94  LGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITG 153

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y         + +F EM ++      ++ G +L AC     + LGK+VH   I+      
Sbjct: 154 YTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASI 213

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN-GRGEEALRIFDDMT 176
             I ++L  LY K G ++   + F ++P +N+ITW +MIS  A++    E  L +F DM 
Sbjct: 214 TSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDML 273

Query: 177 EGGTKPDHVSFIGVLSAC 194
           +G   P+  +   V+S C
Sbjct: 274 KGEVMPNEFTLTSVMSLC 291



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 128/252 (50%), Gaps = 19/252 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH   I  G      + +SL  +Y K G ++   R F ++  KN ++ + ++    +
Sbjct: 198 GKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAE 257

Query: 65  TGDFESV-IRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-KDV 118
             ++  + + +F +M + ++    F+   V+  C     + LGK+V   +  + GC  ++
Sbjct: 258 DENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQ-GFCFKIGCATNL 316

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-----------NGRGEE 167
            ++++ + LY + G  + A ++F +M   ++ITWN+MISGFAQ             RG +
Sbjct: 317 PVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQ 376

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
           AL+IF D+     KPD  +F  +LS CS M  +++G +  A   K   +   + + + +V
Sbjct: 377 ALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVN-SALV 435

Query: 228 DLLGRAGLLEEA 239
           ++  + G +E A
Sbjct: 436 NMYNKCGCIEYA 447



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 2/201 (0%)

Query: 67  DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVD 126
           D +  + + +E + +    +  +L  C    +L   K +H   ++     D+ + ++LV+
Sbjct: 62  DAQEAMAMLKEGQSVQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVN 121

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           +Y +CG    A  +F +MP +N++TW ++I+G+  N +   AL +F +M + G  P   +
Sbjct: 122 VYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYT 181

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
             G+LSAC     ID G K     T +Y         N +  L  ++G LE      +  
Sbjct: 182 LGGMLSACVASHNIDLG-KQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRI 240

Query: 247 DCRHDSSLWEVLLGACTTFRN 267
             ++  + W  ++ AC    N
Sbjct: 241 PDKNVIT-WTTMISACAEDEN 260



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 22/190 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+++HA+ I  G   +VVV S+LV+MY KCG ++ + + F +M  +  V+ ++++ G
Sbjct: 409 LEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISG 468

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRAC--AGLA--ALRLGKEVHCQY---- 109
           Y Q G     I++F +M     + +  +F  +L AC  AGL   A+R    +  +Y    
Sbjct: 469 YSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEP 528

Query: 110 -IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEE 167
            +   GC        ++D++ + G +D A+    +     N   W+S+++G   +G  E 
Sbjct: 529 LMDHYGC--------MIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSLVAGCRSHGNMEL 580

Query: 168 ALRIFDDMTE 177
           A    D + E
Sbjct: 581 AFYAADRLLE 590


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 213/337 (63%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK +H  V+ LG+ G   V +SL++MYGK G +D + ++F++M  ++ VS ++++  
Sbjct: 237 LDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVI 296

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           +   G  E  + +F  M+      D  +   +LRAC      R  + +H  YI R G   
Sbjct: 297 HNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHA-YIHRCGFNA 355

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+II +AL++LYAK G ++ +  IF ++  R+ I W +M++G+A +  G EA+++FD M 
Sbjct: 356 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMV 415

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G + DHV+F  +LSACSH GL++ G+K+F  M++ YR++P+++HY+CMVDLLGR+G L
Sbjct: 416 KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRL 475

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E+A  LI++      S +W  LLGAC  + N  + + VA++++ L P  H +Y++L N+Y
Sbjct: 476 EDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIY 535

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A G W DA K+R LMK   + + PG S+IE  +K++
Sbjct: 536 SAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIH 572



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 21/284 (7%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +HA+VI      +  +   LV MY K G  +++ R+FD+M  K+ VS ++L+ G    G 
Sbjct: 141 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 200

Query: 68  FESVIRIF--------REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             + +  F        R+  E+ L S   V+ ACA + AL  GK +H   ++        
Sbjct: 201 LGACLNAFCRMRTESGRQPNEVTLLS---VVSACADMGALDEGKSLHGVVVKLGMSGKAK 257

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+++Y K G +D A Q+F +MPVR+L++WNSM+     NG  E+ + +F+ M   G
Sbjct: 258 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 317

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR--IKPKIEHYNCMVDLLGRAGLLE 237
             PD  + + +L AC+  GL   GR+  +     +R      I     +++L  + G L 
Sbjct: 318 INPDQATMVALLRACTDTGL---GRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLN 374

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281
            +E + E    R D   W  +L         H   R A K+ +L
Sbjct: 375 ASEDIFEEIKDR-DRIAWTAMLAGYAV----HACGREAIKLFDL 413


>gi|356564808|ref|XP_003550640.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37320-like [Glycine max]
          Length = 501

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 202/333 (60%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G + H   IT G   +V V SSL+ +Y +C  + ++ RVF++M  +N VS +A++ G+ Q
Sbjct: 126 GIQYHCLAITTGFVASVYVGSSLISLYSRCAFLGDACRVFEEMPVRNVVSWTAIIAGFAQ 185

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               +  + +F++M   DL    F++  +L AC G  AL  G+  HCQ IR      + I
Sbjct: 186 EWHVDMCLELFQQMRGSDLRPNYFTYTSLLSACMGSGALGHGRCAHCQIIRMGFHSYLHI 245

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           E+AL+ +Y+KCG +D A  IF  M  R+++TWN+MISG+AQ+G  +EA+ +F++M + G 
Sbjct: 246 ENALISMYSKCGAIDDALHIFENMVSRDVVTWNTMISGYAQHGLAQEAINLFEEMIKQGV 305

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            PD V+++GVLS+C H GL+  G+ +F SM  E+ ++P ++HY+C+VDLLGRAGLL EA 
Sbjct: 306 NPDAVTYLGVLSSCRHGGLVKEGQVYFNSMV-EHGVQPGLDHYSCIVDLLGRAGLLLEAR 364

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I+N     ++ +W  LL +     +  +    A+  + ++P C  +   L N+Y  VG
Sbjct: 365 DFIQNMPIFPNAVVWGSLLSSSRLHGSVPIGIEAAENRLLMEPGCSATLQQLANLYARVG 424

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            WN   ++R  MK  G+K  PG SW+E  SK++
Sbjct: 425 WWNKVARVRKSMKDKGLKPNPGCSWVEVKSKVH 457



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 8/226 (3%)

Query: 39  ESH-RVFDKMLKKN---SVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACA 94
           +SH R+ D ML+      +  ++   G       ES +    +   +D+F     + +C 
Sbjct: 59  QSHLRLIDDMLENYVTIPLGHNSATNGTTAEITIESSVLHMEQGFGVDVFFLSQAVSSCG 118

Query: 95  GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS 154
               L  G + HC  I       V + S+L+ LY++C  +  A ++F +MPVRN+++W +
Sbjct: 119 SKRDLWGGIQYHCLAITTGFVASVYVGSSLISLYSRCAFLGDACRVFEEMPVRNVVSWTA 178

Query: 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKE 213
           +I+GFAQ    +  L +F  M     +P++ ++  +LSAC   G +  GR  H   +   
Sbjct: 179 IIAGFAQEWHVDMCLELFQQMRGSDLRPNYFTYTSLLSACMGSGALGHGRCAHCQIIRMG 238

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +     IE  N ++ +  + G +++A  + EN   R D   W  ++
Sbjct: 239 FHSYLHIE--NALISMYSKCGAIDDALHIFENMVSR-DVVTWNTMI 281



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 5/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+  H ++I +G    + +E++L+ MY KCG +D++  +F+ M+ ++ V+ + ++ G
Sbjct: 224 LGHGRCAHCQIIRMGFHSYLHIENALISMYSKCGAIDDALHIFENMVSRDVVTWNTMISG 283

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I +F EM       D  ++  VL +C     ++ G+      +       
Sbjct: 284 YAQHGLAQEAINLFEEMIKQGVNPDAVTYLGVLSSCRHGGLVKEGQVYFNSMVEHGVQPG 343

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMIS 157
           +   S +VDL  + G +  A      MP+  N + W S++S
Sbjct: 344 LDHYSCIVDLLGRAGLLLEARDFIQNMPIFPNAVVWGSLLS 384


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 210/339 (61%), Gaps = 4/339 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+H   +  GL  +  +  SL+ +Y  CG    +  +FD M  ++ VS + ++ G
Sbjct: 326 LHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAG 385

Query: 62  YCQTGDFESVIRIFREM--EEIDLFSFGI--VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I +FR+M  + I  +   I  V  AC+ L+ALRLGKE+HC  ++    +D
Sbjct: 386 YSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTED 445

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+++D+YAK GC+  + +IF ++  +++ +WN +I+G+  +GRG+EAL +F+ M  
Sbjct: 446 IFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLR 505

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD  +F G+L ACSH GL++ G ++F  M   + I+PK+EHY C+VD+LGRAG ++
Sbjct: 506 LGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRID 565

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LIE      DS +W  LL +C    N  + E+VA K++EL+P+   +YVL+ N++ 
Sbjct: 566 DALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFA 625

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
             G+W+D  ++R  MK  G++K  G SWIE   K+++ L
Sbjct: 626 GSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFL 664



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 148/290 (51%), Gaps = 9/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDES-HRVFDKMLKKNSVSSSALLQ 60
           L  G+ +H     + L  +V V ++L+ MYGKCGLV+E+  RVFD M  K   S +ALL 
Sbjct: 224 LGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLC 283

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q  D    + ++ +M +     D F+ G +L AC+ + +L  G+E+H   +R     
Sbjct: 284 GYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAV 343

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  I  +L+ LY  CG    A  +F  M  R+L++WN MI+G++QNG  +EA+ +F  M 
Sbjct: 344 DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQML 403

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P  ++ + V  ACS +  +  G++      K + +   I   + ++D+  + G +
Sbjct: 404 SDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH-LTEDIFVSSSIIDMYAKGGCI 462

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
             ++ + +      D + W V++           A  + +K++   LKPD
Sbjct: 463 GLSQRIFDRLR-EKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPD 511



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 2   LKQGKEVHAKV-ITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++ G+ +H  V  +   C + V+ + ++ MY  CG   +S  VFDK+ +KN    +A++ 
Sbjct: 121 IEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVS 180

Query: 61  GYCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            Y +   FE  + IF E+  +     D F+   V++ACAGL  L LG+ +H    +    
Sbjct: 181 AYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLV 240

Query: 116 KDVIIESALVDLYAKCGCVDFA-HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            DV + +AL+ +Y KCG V+ A  ++F  M  + + +WN+++ G+AQN    +AL ++  
Sbjct: 241 SDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQ 300

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKI 220
           MT+ G  PD  +   +L ACS M  +  G + H  ++     + P I
Sbjct: 301 MTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 347



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 110/213 (51%), Gaps = 16/213 (7%)

Query: 59  LQGYCQTGDFESVIRIF-REMEEIDLFS------FGIVLRACAGLAALRLGKEVHCQYIR 111
           ++  C++G+ +  +    RE +++ L S       G++L+AC     + +G+ +H + + 
Sbjct: 74  IKKLCESGNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLH-EMVS 132

Query: 112 RSG--CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
            S   C D ++ + ++ +Y+ CG    +  +F ++  +NL  WN+++S + +N   E+A+
Sbjct: 133 ASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAM 192

Query: 170 RIFDDMTEGGT-KPDHVSFIGVLSACSHMGLIDRGRKHFA-SMTKEYRIKPKIEHYNCMV 227
            IF ++      KPD+ +   V+ AC+  GL+D G       M  +  +   +   N ++
Sbjct: 193 SIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDLVSDVFVGNALI 250

Query: 228 DLLGRAGLLEEA-ETLIENADCRHDSSLWEVLL 259
            + G+ GL+EEA + + +  D +  SS W  LL
Sbjct: 251 AMYGKCGLVEEAVKRVFDLMDTKTVSS-WNALL 282


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 200/336 (59%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK++HA +I      NV V S+LVDMY KC  +  +   F +M  KN +S +AL+ G
Sbjct: 288 LEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVG 347

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  +R+F EM+    + D F+ G V+ +CA LA+L  G + HC  +       
Sbjct: 348 YGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHY 407

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV LY KCG ++ AH++F +M   + ++W ++++G+AQ GR +E + +F+ M  
Sbjct: 408 ITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLA 467

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+FIGVLSACS  G +++G  +F SM K++ I P  +HY CM+DL  R+G L+
Sbjct: 468 KDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLK 527

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE  I+      D+  W  LL AC    +  + +  A+ ++E+ P    SYVLL +++ 
Sbjct: 528 EAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHA 587

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G WN   ++R  M+   VKK PG SWI+  +K++
Sbjct: 588 TKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVH 623



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 155/317 (48%), Gaps = 39/317 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSV----------- 53
           G++ H +++ LG   N  V S LV MY K GL+ ++ RVFD+M  KN V           
Sbjct: 159 GRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLR 218

Query: 54  --------------------SSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
                               + + ++ G+ Q G     +  FR M      ID ++FG +
Sbjct: 219 CKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSI 278

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L AC  L+AL  GK++H   IR     +V + SALVD+Y+KC  +  A   F +M  +N+
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNI 338

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           I+W ++I G+ QNG  EEA+R+F +M   G  PD  +   V+S+C+++  ++ G + F  
Sbjct: 339 ISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQ-FHC 397

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           +     +   I   N +V L G+ G +E+A  L +     HD   W  L+     F  A 
Sbjct: 398 LALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEM-LFHDQVSWTALVTGYAQFGRAK 456

Query: 270 VAERVAKKIM--ELKPD 284
               + +K++  ++KPD
Sbjct: 457 ETIDLFEKMLAKDVKPD 473



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 123/278 (44%), Gaps = 38/278 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+   ++L+       L+D+   +F  M ++++VS +A++ G+   G     +R++  + 
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 80  EI------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133
                      +   ++ A + L    LG++ HCQ +R     +  + S LV +YAK G 
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGL 190

Query: 134 VDFAHQIFLQMPVRNL-------------------------------ITWNSMISGFAQN 162
           +  A ++F +M  +N+                               ITW +M++GF QN
Sbjct: 191 IGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQN 250

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
           G   +AL  F  M   G   D  +F  +L+AC  +  +++G++  A + + +     +  
Sbjct: 251 GLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTH-YDDNVFV 309

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            + +VD+  +   ++ AET      C++  S   +++G
Sbjct: 310 GSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVG 347


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 210/339 (61%), Gaps = 4/339 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+H   +  GL  +  +  SL+ +Y  CG    +  +FD M  ++ VS + ++ G
Sbjct: 424 LHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAG 483

Query: 62  YCQTGDFESVIRIFREM--EEIDLFSFGI--VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I +FR+M  + I  +   I  V  AC+ L+ALRLGKE+HC  ++    +D
Sbjct: 484 YSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTED 543

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+++D+YAK GC+  + +IF ++  +++ +WN +I+G+  +GRG+EAL +F+ M  
Sbjct: 544 IFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLR 603

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD  +F G+L ACSH GL++ G ++F  M   + I+PK+EHY C+VD+LGRAG ++
Sbjct: 604 LGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRID 663

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LIE      DS +W  LL +C    N  + E+VA K++EL+P+   +YVL+ N++ 
Sbjct: 664 DALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFA 723

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
             G+W+D  ++R  MK  G++K  G SWIE   K+++ L
Sbjct: 724 GSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFL 762



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 154/298 (51%), Gaps = 20/298 (6%)

Query: 2   LKQGKEVHAKV-ITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++ G+ +H  V  +   C + V+ + ++ MY  CG   +S  VFDK+ +KN    +A++ 
Sbjct: 14  IEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVS 73

Query: 61  GYCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            Y +   FE  + IF E+  +     D F+   V++ACAGL  L LG+ +H    +    
Sbjct: 74  AYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLV 133

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + +AL+ +Y KCG V+ A ++F  MP RNL++WNS+I GF++NG  +E+   F +M
Sbjct: 134 SDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREM 193

Query: 176 TEGGTK--PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
             G     PD  + + VL  C+    I++G      +  +  +  ++   N ++D+  + 
Sbjct: 194 LVGEESFVPDVATLVTVLPVCAGEEDIEKGMA-VHGLAVKLGLNEELMVNNSLIDMYSKC 252

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGA-------CTTFRNAHVAERVAKKIMELKPD 284
             L EA+ L +  D ++  S W  ++G        C TF   ++ +++  +  ++K D
Sbjct: 253 RFLSEAQLLFDKNDKKNIVS-WNSMIGGYAREEDVCRTF---YLLQKMQTEDAKMKAD 306



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 143/289 (49%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  KE+H      GL  N +V ++ +  Y +CG +  S RVFD M  K   S +ALL G
Sbjct: 323 LQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCG 382

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  D    + ++ +M +     D F+ G +L AC+ + +L  G+E+H   +R     D
Sbjct: 383 YAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVD 442

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I  +L+ LY  CG    A  +F  M  R+L++WN MI+G++QNG  +EA+ +F  M  
Sbjct: 443 PFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLS 502

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P  ++ + V  ACS +  +  G++      K + +   I   + ++D+  + G + 
Sbjct: 503 DGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH-LTEDIFVSSSIIDMYAKGGCIG 561

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            ++ + +      D + W V++           A  + +K++   LKPD
Sbjct: 562 LSQRIFDRLR-EKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPD 609



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G  VH   + LGL   ++V +SL+DMY KC  + E+  +FDK  KKN VS ++++ G
Sbjct: 220 IEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGG 279

Query: 62  YCQTGDFESVIRIFREME------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           Y +  D      + ++M+      + D F+   VL  C   + L+  KE+H    R    
Sbjct: 280 YAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQ 339

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            + ++ +A +  Y +CG +  + ++F  M  + + +WN+++ G+AQN    +AL ++  M
Sbjct: 340 SNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQM 399

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKI 220
           T+ G  PD  +   +L ACS M  +  G + H  ++     + P I
Sbjct: 400 TDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 445


>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 127/327 (38%), Positives = 198/327 (60%), Gaps = 6/327 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +HA  I +G   ++ V ++L+ MY KCG +  +  +FD ML K  VS +A++ G
Sbjct: 274 LFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAG 333

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + GD +  + +F  ME +    DL +   ++  C    AL LGK +   Y   +G KD
Sbjct: 334 XAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWID-TYATANGLKD 392

Query: 118 -VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            +++ +AL+D+YAKCG +D A ++F  MP ++L++W ++I+G A NG  +EAL +F  M 
Sbjct: 393 NLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMV 452

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E G KP+H++F+ VL AC+H G +++G + F  MTK Y+I P ++HY+CM DLLGR G L
Sbjct: 453 ELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRL 512

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA   I+N   + D  +W VLL AC   +N  + E VA  + EL+P   + YV + N+Y
Sbjct: 513 KEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQMANIY 572

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGK 323
            + G+W+    IRT+MK +   K  G+
Sbjct: 573 ASAGKWDRVAAIRTMMKCNKAMKSSGE 599



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 142/297 (47%), Gaps = 11/297 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALL 59
           LK  + +H+  I +G+  +V V ++ +  Y KCG    +  VFD + K  K  VS ++++
Sbjct: 171 LKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMI 230

Query: 60  QGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY         +  F++M       DL +   +L +C     L  GK +H   I+    
Sbjct: 231 AGYAHFEQCSKAVGFFKKMLXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCD 290

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D+ + + L+ +Y+KCG +  A  +F  M  +  ++W +MI+G A+ G  +EA+ +F  M
Sbjct: 291 SDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAM 350

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G KPD V+ I ++S C   G ++ G K   +      +K  +   N ++D+  + G 
Sbjct: 351 EAVGEKPDLVTIISLMSGCGQTGALELG-KWIDTYATANGLKDNLMVCNALIDVYAKCGS 409

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
           ++ A  L      +   S W  L+  C        A  +  +++E  LKP+ H++++
Sbjct: 410 MDNARELFYTMPEKSLVS-WTTLIAGCALNGEFKEALGLFFQMVELGLKPN-HITFL 464



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 19/238 (7%)

Query: 51  NSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVH 106
           NS  + ++ QGY         + +FR+M++  L     +F  V +AC+ L  L+  + VH
Sbjct: 23  NSSITESVNQGYAH-----KALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVH 77

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
              ++     D+ +++++VD+Y KC  + FA+ +F +MP R++ +WNSMI GFAQ G  +
Sbjct: 78  THVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVD 137

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH---- 222
             + +F +M   G + D V+ IG+    +H  L  +  K   S+   + IK  I+     
Sbjct: 138 RVVSLFCEMGIEGIRADSVTVIGL----THSALSLKDLKMLESI-HSFGIKIGIDTDVSV 192

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSL-WEVLLGACTTFRNAHVAERVAKKIM 279
            N  +    + G    AET+ +  D    + + W  ++     F     A    KK++
Sbjct: 193 SNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKML 250



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 123/251 (49%), Gaps = 7/251 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            LK  + VH  V+      ++ V++S+VDMY KC  +  ++ +F +M  ++  S ++++ 
Sbjct: 69  NLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIX 128

Query: 61  GYCQTGDFESVIRIFREM--EEIDLFSFGIV--LRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+ Q G  + V+ +F EM  E I   S  ++    +   L  L++ + +H   I+     
Sbjct: 129 GFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDT 188

Query: 117 DVIIESALVDLYAKCGCVDFAHQIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
           DV + +  +  YAKCG    A  +F  +   ++  ++WNSMI+G+A   +  +A+  F  
Sbjct: 189 DVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKK 248

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M  GG + D  + + +LS+C    ++  G K   +   +      I+  N ++ +  + G
Sbjct: 249 MLXGGFRADLSTILSLLSSCVQPEVLFHG-KLIHAHGIQVGCDSDIQVINTLISMYSKCG 307

Query: 235 LLEEAETLIEN 245
            +  A  L +N
Sbjct: 308 DIGSARYLFDN 318


>gi|115470991|ref|NP_001059094.1| Os07g0191500 [Oryza sativa Japonica Group]
 gi|34394559|dbj|BAC83863.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510108|dbj|BAD30876.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610630|dbj|BAF21008.1| Os07g0191500 [Oryza sativa Japonica Group]
          Length = 550

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 142/345 (41%), Positives = 206/345 (59%), Gaps = 21/345 (6%)

Query: 2   LKQGKEVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L +G+++HA    LGL   + VV +SL+ +Y  CGL   +  +F ++  ++ VS +  + 
Sbjct: 79  LPEGRQLHALAAKLGLAPSHTVVANSLLHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVD 138

Query: 61  GYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG- 114
                GD  + + +FREM+       D ++   VL ACAG  AL LG   H   +R  G 
Sbjct: 139 ALVGNGDHLAALDLFREMQRDTELAPDAYTVQSVLGACAGAGALSLGVYAHALLLRELGG 198

Query: 115 -------CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
                   +D++I ++LVDLY KCG ++ A Q+F +MP R+L +WN MI   A +GR  E
Sbjct: 199 DGDGEAVSRDMLINNSLVDLYGKCGALELAQQVFDRMPARDLASWNVMILTLANHGRVCE 258

Query: 168 ALRIFDDMTE-GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           ++ +FD MT+     P+ ++F+ VLSAC+H GL++ GR++FA M  +YRIKP+IEHY CM
Sbjct: 259 SVELFDRMTQVEKMAPNAITFVAVLSACNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCM 318

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA--HVAERVAKKIMELKPD 284
           VDLL RAG +EEA  ++   +CR D+ +W  LL AC   +NA   + E +AK  +E+ PD
Sbjct: 319 VDLLARAGFIEEALDIVAGMNCRPDAIIWRSLLDACCK-KNAGLELTEAMAKLALEV-PD 376

Query: 285 CHLS--YVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             +S  YVLL  VY +  RWND   +R LM   GVKK PG S IE
Sbjct: 377 DAVSGVYVLLSRVYASAQRWNDVGMVRRLMVEEGVKKEPGFSSIE 421


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 135/337 (40%), Positives = 198/337 (58%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GKE+H  V+   +  +  V S+L+ MY  C  ++ +  VF ++  ++ V  ++++  
Sbjct: 515 LKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISA 574

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q+G   + + + REM     E++  +    L AC+ LAALR GKE+H Q+I R G   
Sbjct: 575 CAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH-QFIIRCGLDT 633

Query: 118 V-IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              I ++L+D+Y +CG +  + +IF  MP R+L++WN MIS +  +G G +A+ +F    
Sbjct: 634 CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFR 693

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+H++F  +LSACSH GLI+ G K+F  M  EY + P +E Y CMVDLL RAG  
Sbjct: 694 TMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQF 753

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            E    IE      ++++W  LLGAC    N  +AE  A+ + EL+P    +YVL+ N+Y
Sbjct: 754 NETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIY 813

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A GRW DA KIR LMK  GV K PG SWIE   KL+
Sbjct: 814 SAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLH 850



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 131/231 (56%), Gaps = 6/231 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G +VHA+++  G+     + S L+++Y + G V+++ R+FDKM ++N  S +A+++ 
Sbjct: 105 LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 164

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           YC  GD+E  I++F     E    D F F  V +AC+ L   R+GK+V+  Y+   G + 
Sbjct: 165 YCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY-DYMLSIGFEG 223

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  ++ +++D++ KCG +D A + F ++  +++  WN M+SG+   G  ++AL+   DM 
Sbjct: 224 NSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMK 283

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
             G KPD V++  ++S  +  G  +   K+F  M      KP +  +  ++
Sbjct: 284 LSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALI 334



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 166/358 (46%), Gaps = 53/358 (14%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L+ G+E+H   I +  L  +++V +SLVD Y KC  V+ + R F  + + + VS +A+L 
Sbjct: 378 LRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA 437

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSF-GIV-------------------------- 89
           GY   G  E  I +  EM+    E D+ ++ G+V                          
Sbjct: 438 GYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDP 497

Query: 90  --------LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
                   L AC  +  L+LGKE+H   +R        + SAL+ +Y+ C  ++ A  +F
Sbjct: 498 NTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVF 557

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
            ++  R+++ WNS+IS  AQ+GR   AL +  +M     + + V+ +  L ACS +  + 
Sbjct: 558 SELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALR 617

Query: 202 RGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
           +G++       ++ I+  ++      N ++D+ GR G ++++  + +    R D   W V
Sbjct: 618 QGKE-----IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR-DLVSWNV 671

Query: 258 LLGACTTFRNAHVAERVAKKI--MELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           ++           A  + ++   M LKP+ H+++  L +     G   + +K   +MK
Sbjct: 672 MISVYGMHGFGMDAVNLFQQFRTMGLKPN-HITFTNLLSACSHSGLIEEGWKYFKMMK 728



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 122/270 (45%), Gaps = 76/270 (28%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM----------------- 47
           GK+V+  ++++G  GN  V+ S++DM+ KCG +D + R F+++                 
Sbjct: 209 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 268

Query: 48  ------------------LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIV 89
                             +K + V+ +A++ GY Q+G FE   + F EM  +  F   +V
Sbjct: 269 KGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVV 328

Query: 90  ----------------------------------------LRACAGLAALRLGKEVHCQY 109
                                                   + AC  L+ LR G+E+H   
Sbjct: 329 SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYC 388

Query: 110 IRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
           I+      D+++ ++LVD YAKC  V+ A + F  +   +L++WN+M++G+A  G  EEA
Sbjct: 389 IKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEA 448

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           + +  +M   G +PD +++ G+++  +  G
Sbjct: 449 IELLSEMKFQGIEPDIITWNGLVTGFTQYG 478



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 110/228 (48%), Gaps = 13/228 (5%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  +L+ C  L  LRLG +VH Q +         + S L+++Y + GCV+ A ++F +M 
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN+ +W +++  +   G  EE +++F  M   G +PDH  F  V  ACS +     G+ 
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 206 HFASMTKEYRIKPKIEHYNC----MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            +     +Y +    E  +C    ++D+  + G ++ A    E  + + D  +W +++  
Sbjct: 212 VY-----DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSG 265

Query: 262 CTTFRNAHVAERVAK--KIMELKPDCHLSYVLLDNVYRAVGRWNDAFK 307
            T+      A +     K+  +KPD  +++  + + Y   G++ +A K
Sbjct: 266 YTSKGEFKKALKCISDMKLSGVKPD-QVTWNAIISGYAQSGQFEEASK 312


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 206/333 (61%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA  +      +V V S+L+DMY +CG +D +  VFD++  KN VS +AL+ G+ +
Sbjct: 184 GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 243

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD E+ + +F EM+    E   F++  V  A AG+ AL  GK VH   I+        +
Sbjct: 244 KGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFV 303

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + ++D+YAK G +  A ++F ++  ++++TWNSM++ FAQ G G EA+  F++M + G 
Sbjct: 304 GNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGV 363

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             + ++F+ +L+ACSH GL+  G+++F  M KEY ++P+I+HY  +VDLLGRAGLL +A 
Sbjct: 364 HLNQITFLSILTACSHGGLVKEGKQYF-DMMKEYNLEPEIDHYVTVVDLLGRAGLLNDAL 422

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I     +  +++W  LLG+C   +NA + +  A  + EL PD     VLL N+Y + G
Sbjct: 423 VFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTG 482

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W+ A ++R +MK +GVKK P  SW+E  + ++
Sbjct: 483 QWDAAARVRKMMKATGVKKEPACSWVEIENSVH 515



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 147/269 (54%), Gaps = 8/269 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   + +HA +      G+V +++SL+ +Y KCG V ++ RVFD M  ++  S ++L+ G
Sbjct: 80  LDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAG 139

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    +  + +   M     + + F+F  +L+A    A+  +G+++H   ++     D
Sbjct: 140 YAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDD 199

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YA+CG +D A  +F Q+  +N ++WN++I+GFA+ G GE  L +F +M  
Sbjct: 200 VYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQR 259

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLL 236
            G +  H ++  V SA + +G +++G+   A M K   R+   +   N ++D+  ++G +
Sbjct: 260 NGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG--NTILDMYAKSGSM 317

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTF 265
            +A  + +  D + D   W  +L A   +
Sbjct: 318 IDARKVFDRVD-KKDVVTWNSMLTAFAQY 345



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 2/172 (1%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           ++ ACA   +L   + +H           V ++++L+ LY KCG V  A ++F  MP R+
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           + +W S+I+G+AQN   +EAL +   M  G  KP+  +F  +L A         G +  A
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            +T +Y     +   + ++D+  R G ++ A  + +  + ++  S W  L+ 
Sbjct: 190 -LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS-WNALIA 239



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VHA +I  G   +  V ++++DMY K G + ++ +VFD++ KK+ V+ +++L  
Sbjct: 282 LEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTA 341

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G     +  F EM +    ++  +F  +L AC+    ++ GK+        +   +
Sbjct: 342 FAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPE 401

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           +     +VDL  + G ++ A     +MP++     W +++
Sbjct: 402 IDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 441


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 213/333 (63%), Gaps = 6/333 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++H   +   L  N+ V ++L+D+Y KCG+++++ +VF+ M  K+SV+ S+++ GY Q+
Sbjct: 184 KKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQS 243

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-KDVII 120
            ++E  + ++R  + + L    F+   V+ AC+ LAAL  GK++H   IR+SG   +V +
Sbjct: 244 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHA-VIRKSGFGSNVFV 302

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            S+ VD+YAKCG +  ++ IF ++  +N+  WN++ISGFA++ R +E + +F+ M + G 
Sbjct: 303 ASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGM 362

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+ V+F  +LS C H GL++ GR+ F  M   Y + P + HY+CMVD+LGRAGLL EA 
Sbjct: 363 HPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAY 422

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LI++      +S+W  LL +C   +N  +AE  AKK+ EL+P+   ++VLL N+Y A  
Sbjct: 423 ELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANK 482

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W +  K R L++   VKK+ G+SWI+   K++
Sbjct: 483 QWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVH 515



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 132/261 (50%), Gaps = 6/261 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           + K  H K + + L G+V + + L++ Y KCG V+ + +VFD ML+++ VS + ++  Y 
Sbjct: 81  EAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 140

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           +       + IF EM     +   F+   VL AC         K++HC  ++ S   ++ 
Sbjct: 141 RNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLY 200

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+DLYAKCG ++ A Q+F  M  ++ +TW+SM++G+ Q+   EEAL ++       
Sbjct: 201 VGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMS 260

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            + +  +   V+ ACS++  +  G++  A + K       +   +  VD+  + G L E+
Sbjct: 261 LEQNQFTLSSVICACSNLAALIEGKQMHAVIRKS-GFGSNVFVASSAVDMYAKCGSLRES 319

Query: 240 ETLIENADCRHDSSLWEVLLG 260
             +        +  LW  ++ 
Sbjct: 320 YIIFSEVQ-EKNIELWNTIIS 339



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 4/180 (2%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ CA   A+   K  H + +R     DV + + L++ Y+KCG V+ A Q+F  M  R+
Sbjct: 69  ILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERS 128

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC-SHMGLIDRGRKHF 207
           L++WN+MI  + +N    EAL IF +M   G K    +   VLSAC ++   ++  + H 
Sbjct: 129 LVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHC 188

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
            SM     +   +     ++DL  + G++ +A  + E+   +  S  W  ++      +N
Sbjct: 189 LSMKTSLDLNLYVG--TALLDLYAKCGMINDAVQVFESMQDK-SSVTWSSMVAGYVQSKN 245



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK++HA +   G   NV V SS VDMY KCG + ES+ +F ++ +KN    + ++ G
Sbjct: 281 LIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISG 340

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CK 116
           + +    + V+ +F +M++  +     +F  +L  C     +  G+          G   
Sbjct: 341 FAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSP 400

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISG 158
           +V+  S +VD+  + G +  A+++   +P     + W S+++ 
Sbjct: 401 NVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLAS 443


>gi|242089513|ref|XP_002440589.1| hypothetical protein SORBIDRAFT_09g003570 [Sorghum bicolor]
 gi|241945874|gb|EES19019.1| hypothetical protein SORBIDRAFT_09g003570 [Sorghum bicolor]
          Length = 613

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/329 (37%), Positives = 199/329 (60%), Gaps = 4/329 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
            +G+++H  V+  G   ++ VES L+DMY KCGL++++ RVF      + V  + +L G+
Sbjct: 246 SEGQQIHGLVVKAGFETDLHVESELMDMYSKCGLMEDALRVFRSCQDPDEVFLTVILVGF 305

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G  E    +F EM     +ID      VL A    A   LGK++H   I++    + 
Sbjct: 306 AQNGLEEKAFELFAEMVGKGIDIDANMVSAVLGAFGASAPFALGKQIHALVIKKCFGGNT 365

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + L+++Y+KCG +  + ++F   P +N +TWNS+I+ FA++G G E   +F+ M   
Sbjct: 366 YVCNGLINMYSKCGELQESIEVFDGTPSKNTVTWNSIIAAFARHGHGSEVFGLFESMKAD 425

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KP +V+F+ +L  CSH+G   +G +   SM+ +Y I PK+EHY C+VD+LGRA  L++
Sbjct: 426 GVKPTNVTFLSLLHGCSHVGSASKGLEILNSMSSQYGIHPKVEHYACVVDMLGRASQLDD 485

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A+  IE+   +  + LW+ L+GAC+  +++ V +  A+K++ L PDC  +YVLL N+Y +
Sbjct: 486 AKAFIEDGPFKDSALLWQALMGACSFHKDSEVGKYAAEKLLLLDPDCTAAYVLLSNIYSS 545

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            GRW+D  +I   M+  G++K  GKSWIE
Sbjct: 546 EGRWDDRARILKRMREKGLRKDTGKSWIE 574



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 129/268 (48%), Gaps = 7/268 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH   ++ GL   V V ++L+  Y +C     + RVFD M  +N V+ +A++ G  +   
Sbjct: 151 VHGLAVSCGLDAEVSVGNALITAYFECSSPGSAERVFDAMADRNVVTWTAMVSGMARAER 210

Query: 68  FESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           +   + +FR+M    + +  S+   L ACAG  A   G+++H   ++     D+ +ES L
Sbjct: 211 YRESLSLFRQMRHAVDANRASYSSSLLACAGSLAASEGQQIHGLVVKAGFETDLHVESEL 270

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D+Y+KCG ++ A ++F      + +    ++ GFAQNG  E+A  +F +M   G   D 
Sbjct: 271 MDMYSKCGLMEDALRVFRSCQDPDEVFLTVILVGFAQNGLEEKAFELFAEMVGKGIDIDA 330

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
                VL A         G++  A + K+          N ++++  + G L+E+  + +
Sbjct: 331 NMVSAVLGAFGASAPFALGKQIHALVIKKC-FGGNTYVCNGLINMYSKCGELQESIEVFD 389

Query: 245 NADCRHDSSLWEVLLGACTTFRNAHVAE 272
               + ++  W  ++ A    R+ H +E
Sbjct: 390 GTPSK-NTVTWNSIIAAFA--RHGHGSE 414



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVS----SSALLQGYCQTGDFESVIRIFR 76
           + V +SLV MY +CG   ++ R FD+M  ++SVS     +A             ++R   
Sbjct: 58  LAVWNSLVAMYARCGRRGDAARAFDEMPLRDSVSWNSLLAASASAADALALLRRMLRAAP 117

Query: 77  EMEEIDLFSFGIVLRACAGLAALRLGKE-----VHCQYIRRSGCKDVIIESALVDLYAKC 131
                D  +   VL ACA               VH   +      +V + +AL+  Y +C
Sbjct: 118 GAAACDHATLTTVLSACARADGGGGTGAASLPVVHGLAVSCGLDAEVSVGNALITAYFEC 177

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
                A ++F  M  RN++TW +M+SG A+  R  E+L +F  M       +  S+   L
Sbjct: 178 SSPGSAERVFDAMADRNVVTWTAMVSGMARAERYRESLSLFRQMRH-AVDANRASYSSSL 236

Query: 192 SACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            AC+       G++ H   +   +     +E    ++D+  + GL+E+A
Sbjct: 237 LACAGSLAASEGQQIHGLVVKAGFETDLHVESE--LMDMYSKCGLMEDA 283



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 12/118 (10%)

Query: 89  VLRACAGLAALRLGKEVH------------CQYIRRSGCKDVIIESALVDLYAKCGCVDF 136
           +L  C     LRLG  +H            C +   S    + + ++LV +YA+CG    
Sbjct: 17  LLARCGRAGDLRLGTALHAVVAKNPAHFRLCPHRSASLHHVLAVWNSLVAMYARCGRRGD 76

Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           A + F +MP+R+ ++WNS+++  A        LR       G    DH +   VLSAC
Sbjct: 77  AARAFDEMPLRDSVSWNSLLAASASAADALALLRRMLRAAPGAAACDHATLTTVLSAC 134


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 132/333 (39%), Positives = 196/333 (58%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H   I  GL  +V V  SLVDMY K G  + +  VF  M  KN V+ ++++  Y  
Sbjct: 465 GHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSW 524

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  I +  ++ +    +D  S   VL A + +AAL  GK +H   IR     D+ +
Sbjct: 525 NGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQV 584

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           E+AL+D+Y KCGC+ +A  IF  MP RNL+TWNSMI+G+  +G  EEA+R+F +M    T
Sbjct: 585 ENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSET 644

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            PD V+F+ ++++CSH G+++ G   F  M  EY ++P++EHY  +VDLLGRAG L++A 
Sbjct: 645 APDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAY 704

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
           + I       D S+W  LL AC   RN  + E VA  +++++P    +YV L N+Y  V 
Sbjct: 705 SFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVE 764

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            W+ A  +R  MK  G+KK PG SWIE  ++++
Sbjct: 765 MWDRAANLRASMKGRGLKKSPGCSWIEVKNRVD 797



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 150/286 (52%), Gaps = 8/286 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VHA+VI   +  NV ++S+L+ MY KCG  +++  VF  M +++ V+  +++ G+CQ
Sbjct: 364 GRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQ 423

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
              F+  + +FR ME+     D      V+ A  GL  + LG  +H   I+R    DV +
Sbjct: 424 NRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFV 483

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
             +LVD+Y+K G  + A  +F  MP +NL+ WNSMIS ++ NG  E ++ +   + + G 
Sbjct: 484 ACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGF 543

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D VS   VL A S +  + +G+   A   +  +I   ++  N ++D+  + G L+ A+
Sbjct: 544 YLDSVSITTVLVAVSSVAALLKGKTLHAYQIR-LQIPSDLQVENALIDMYVKCGCLKYAQ 602

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPD 284
            + EN   R +   W  ++    +  N   A R+ K++   E  PD
Sbjct: 603 LIFENMP-RRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPD 647



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 131/252 (51%), Gaps = 13/252 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH  VI +    +  V +SL+ MY K G V+++ +VFD++L K     +A++  
Sbjct: 260 LDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISA 319

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     + ++ +M+     +D F+   +L  C+ + +   G+ VH + I+RS   +
Sbjct: 320 FIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSN 379

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I+SAL+ +Y KCG  + A  +F  M  R+++ W SMI+GF QN R ++AL +F  M +
Sbjct: 380 VAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEK 439

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH---YNC-MVDLLGRA 233
            G K D      V+SA   +  ++ G      +   + IK  +E      C +VD+  + 
Sbjct: 440 EGVKADSDVMTSVISAGLGLENVELGH-----LIHGFAIKRGLESDVFVACSLVDMYSKF 494

Query: 234 GLLEEAETLIEN 245
           G  E AE +  +
Sbjct: 495 GFAESAEMVFSS 506



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 128/253 (50%), Gaps = 28/253 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-----S 56
           L  G+ +HA ++T+GL  +  + +SL++MY KCGL+  + +VFDKM +    +      +
Sbjct: 71  LYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWN 130

Query: 57  ALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            ++ GY + G FE  +  F  M+E+  +                 G+++H   IR     
Sbjct: 131 PVIDGYFKYGHFEEGLAQFCRMQELSWY---------------MAGRQIHGYIIRNMFEG 175

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
           D  +E+AL+ +Y+ C     A  +F ++  R N++ WN MI GF +NG  E++L ++   
Sbjct: 176 DPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLA 235

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNC--MVDLLGR 232
                K    SF G  +ACSH  ++D GR+ H   +   ++  P    Y C  ++ +  +
Sbjct: 236 KNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDP----YVCTSLLTMYAK 291

Query: 233 AGLLEEAETLIEN 245
           +G +E+A+ + + 
Sbjct: 292 SGSVEDAKKVFDQ 304



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 134/267 (50%), Gaps = 6/267 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-NSVSSSALLQGYC 63
           G+++H  +I     G+  +E++L+ MY  C    E+  +F K+  + N V+ + ++ G+ 
Sbjct: 161 GRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFV 220

Query: 64  QTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           + G +E  + ++     E  ++   SF     AC+    L  G++VHC  I+ +   D  
Sbjct: 221 ENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPY 280

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+ +YAK G V+ A ++F Q+  + +   N+MIS F  NGR  +AL +++ M  G 
Sbjct: 281 VCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGE 340

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           T  D  +   +LS CS +G  D GR   A + K   ++  +   + ++ +  + G  E+A
Sbjct: 341 TPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKR-SMQSNVAIQSALLTMYYKCGSTEDA 399

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFR 266
           +++      R   +   ++ G C   R
Sbjct: 400 DSVFYTMKERDVVAWGSMIAGFCQNRR 426



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 84/151 (55%), Gaps = 7/151 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK +HA  I L +  ++ VE++L+DMY KCG +  +  +F+ M ++N V+ ++++ G
Sbjct: 563 LLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAG 622

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G+ E  +R+F+EM+      D  +F  ++ +C+    +  G  +  Q +R     +
Sbjct: 623 YGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLF-QLMRIEYGVE 681

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPV 146
             +E  +++VDL  + G +D A+     MP+
Sbjct: 682 PRMEHYASVVDLLGRAGRLDDAYSFIRGMPI 712



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 122/296 (41%), Gaps = 43/296 (14%)

Query: 48  LKKNSVSSS--ALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRL 101
           L++  VS S  + ++   Q G +   + +  +     L    F+F  +L+ CA L+ L  
Sbjct: 14  LRQTEVSPSINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYH 73

Query: 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM-----PVRNLITWNSMI 156
           G+ +H   +      D  I ++L+++Y KCG +  A Q+F +M        ++  WN +I
Sbjct: 74  GRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVI 133

Query: 157 SGFAQNGRGEEALRIFDDMTE-------------------GGTKPDHVSFIGVLSACSHM 197
            G+ + G  EE L  F  M E                    G      + IG+ S+CS  
Sbjct: 134 DGYFKYGHFEEGLAQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCS-- 191

Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE---EAETLIENADCRHDSSL 254
               R  + + S+  +   +  I  +N M+      G+ E   E  +L +N +C+  S+ 
Sbjct: 192 ----RPMEAW-SLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSAS 246

Query: 255 WEVLLGACTTFRNAHVAERVAKKI--MELKPDCHLSYVLLDNVYRAVGRWNDAFKI 308
           +     AC+         +V   +  M  + D ++   LL  +Y   G   DA K+
Sbjct: 247 FTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLL-TMYAKSGSVEDAKKV 301


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/337 (39%), Positives = 203/337 (60%), Gaps = 7/337 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KKNSVSSSALLQG 61
            G+++HA V   G   N+ V +SL+DMY K G +  +  +FD+M    +N V  +A++ G
Sbjct: 110 NGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAG 169

Query: 62  YCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q   +   I +FR M++      +  +   VL ACA L AL LGK +     RR    
Sbjct: 170 YAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMAL 229

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            + + +AL D+YAKCGC+  A ++F +M  R++I+W+ +I G A  G  +EA   F +M 
Sbjct: 230 GLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEML 289

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G KP+ V F+G+L+AC+H GL+ +G   F +M KEY + PK+EHY C+VDLL RAG L
Sbjct: 290 DCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGEL 349

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           ++AE +I +   + +  +W  LLG C  +R++   +RV + I+EL  D   SYV L NVY
Sbjct: 350 DKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVY 409

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            ++GR +DA K R  M+ +GV K PG SWIE ++ ++
Sbjct: 410 SSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVH 446



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 140/280 (50%), Gaps = 15/280 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSL-VDMYGKCG---LVDESHRVFDKMLKKNSVSSSA 57
           + Q  ++ A++IT  +  +VV  + + V + G C     V ++  +F  +   N  + +A
Sbjct: 1   MAQVLQIQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNA 60

Query: 58  LLQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
            L+   Q   +   I+ F            D F+F  VL+ACAGLA +  G+++H    +
Sbjct: 61  TLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTK 120

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--RNLITWNSMISGFAQNGRGEEAL 169
           +    ++ + ++L+D+Y K G +  A  +F +M V  RN++ WN+MI+G+AQN +  +A+
Sbjct: 121 QGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAI 180

Query: 170 RIFDDMTE-GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
            +F  M + GG  P+ V+ + VL AC+H+G +D G K          +   +   N + D
Sbjct: 181 EVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLG-KWIDGFISRREMALGLFLGNALAD 239

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
           +  + G + EA  +    + R D   W +++     + +A
Sbjct: 240 MYAKCGCITEARRVFNKMEER-DVISWSIIICGLAMYGHA 278


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/336 (37%), Positives = 202/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK VH  V  L L  ++ V +SL+ MY KC  VD +  +F+ +  +  VS +A++ G
Sbjct: 365 LERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILG 424

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +  F EM+ +    D F+   V+ A A L+  R  K +H   IR    K+
Sbjct: 425 YAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKN 484

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALVD+Y+KCG +  A ++F  +  R++ITWN+MI G+  +G G  AL +FD M +
Sbjct: 485 IFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKK 544

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  +P+ ++++ V+SACSH GL+D G +HF SM ++Y ++P ++HY  MVDLLGRAG ++
Sbjct: 545 GAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIK 604

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   IEN       +++    GAC   +N  V E+ AKK+ EL PD    +VLL N+Y 
Sbjct: 605 EAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYA 664

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +  +W+   ++R  M+  G+KK PG S +E  ++++
Sbjct: 665 STSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVH 700



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 157/291 (53%), Gaps = 12/291 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+GKE+H ++IT     NV   + +V+MY KC  +D+++++FD+M +++ VS + ++ G
Sbjct: 163 LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAG 222

Query: 62  YCQTG----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G      E V+R+  E +  D  +   VL A A +  L +GK +H   IR    K 
Sbjct: 223 FSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL 282

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I +AL D+Y+KCG V+ A  IF  M  + +++WNSM+ G+ QNG  E+A+ +F+ M E
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE 342

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P  V+ +  L AC+ +G ++RG K       +  +   I   N ++ +  +   ++
Sbjct: 343 EGIDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVD 401

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV----AKKIMELKPD 284
            A  +  N + R   S   ++LG     +N  V+E +      K + +KPD
Sbjct: 402 IASDIFNNLNGRTHVSWNAMILGYA---QNGRVSEALNCFSEMKSLGMKPD 449



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 148/284 (52%), Gaps = 8/284 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K+  ++   VI  GL    + ++ LV ++ K G ++E+ RVF+ +  K       +L+G
Sbjct: 62  MKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKG 121

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +    E+ +     M   D+    ++F  +L+ C   A L+ GKE+H Q I  S   +
Sbjct: 122 YAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAAN 181

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   + +V++YAKC  +D A+++F +MP R+L++WN++I+GF+QNG  ++AL +   M +
Sbjct: 182 VFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQD 241

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G +PD ++ + VL A + +GL+  G+  H  ++   +     I     + D+  + G +
Sbjct: 242 EGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNIS--TALADMYSKCGSV 299

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
           E A  + +  D +   S W  ++           A  V +K++E
Sbjct: 300 ETARLIFDGMDQKTVVS-WNSMMDGYVQNGEPEKAIAVFEKMLE 342


>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
 gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
          Length = 439

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/360 (40%), Positives = 205/360 (56%), Gaps = 38/360 (10%)

Query: 5   GKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G  +HA    LGL   N++V ++LVDMY KCG V+ S   FD++  KNS S + ++ G+ 
Sbjct: 31  GPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVELSRLCFDELKVKNSFSWNTMIDGFV 90

Query: 64  QTGDFESVIRIFREMEEIDLFSFGI----------------------------------- 88
           + G     I +F EM E  + S+ +                                   
Sbjct: 91  RNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVT 150

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           VL ACA L AL LG  VH +Y  + G +D V I ++L+DLY++CG ++ A Q+F +M  R
Sbjct: 151 VLSACANLGALGLGLWVH-RYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGER 209

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
            L++WNS+I G A NG  EEAL  FD M + G KP+ VSF G L+ACSH GL+D G K+F
Sbjct: 210 TLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSFTGALTACSHTGLVDEGLKYF 269

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
             M + ++I P+IEHY C+VDL  RAG LE+A ++++N   + +  +   LL AC T  +
Sbjct: 270 DIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQNMPMKPNEVVVGSLLAACRTRGD 329

Query: 268 AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             +AER+   ++ L P    +YVLL N+Y AVGRW+ A K R  MK  G++K PG S IE
Sbjct: 330 VELAERLMNYLVHLDPGADSNYVLLSNIYAAVGRWDGACKQRMTMKALGIQKKPGFSSIE 389



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 40/213 (18%)

Query: 85  SFGIVLRACAGLAAL--RLGKEVHCQYIRRSGCK--DVIIESALVDLYAKCGCVDFAHQI 140
           +F  +L  CA L +    LG  +H  Y R+ G    ++++ +ALVD+YAKCG V+ +   
Sbjct: 12  TFITLLSGCADLPSQGNSLGPLLHA-YTRKLGLDTCNLMVGTALVDMYAKCGHVELSRLC 70

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG--------------------- 179
           F ++ V+N  +WN+MI GF +NG+  EA+ +FD+M E G                     
Sbjct: 71  FDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEAL 130

Query: 180 ----------TKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVD 228
                      +PD V+ + VLSAC+++G +  G   H  ++ K  R   KI   N ++D
Sbjct: 131 EWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKI--CNSLID 188

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           L  R G +E A  + E    R   S W  ++G 
Sbjct: 189 LYSRCGAIELARQVFEKMGERTLVS-WNSIIGG 220


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 190/307 (61%), Gaps = 7/307 (2%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL- 83
           ++++  + +CG+V+ +   FD+M +++ +S SA++ GY Q G F   + IF +M++  + 
Sbjct: 241 NAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIR 300

Query: 84  ---FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
              F    VL ACA L AL  G+ +H    R S   D ++ ++LVD+YAKCG +D A ++
Sbjct: 301 PRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEV 360

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F +M  + + +WN+MI G A +GR E+A+ +F  M      P+ ++F+GVL+AC+H GL+
Sbjct: 361 FEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAHGGLV 417

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            +G   F SM KEY ++P+IEHY C+VDLLGRAGLL EAE ++ +       ++W  LLG
Sbjct: 418 QKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLG 477

Query: 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
           AC    N  + ERV K ++EL+P     Y LL N+Y   GRW +  ++R LMK  G+K  
Sbjct: 478 ACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTT 537

Query: 321 PGKSWIE 327
           PG S I+
Sbjct: 538 PGTSIID 544



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 141/352 (40%), Gaps = 76/352 (21%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGL-----VDESHRVFDKMLKKNSVSSSALLQ 60
           K+ HA ++  G   +  +  SLV  Y           + S RVFD + K N    + +++
Sbjct: 52  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR----- 111
              +  +    I ++ EM       + +++  VL+AC+    +  G +VH   ++     
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGG 171

Query: 112 ---------------------------RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
                                      + G  D +  +A++D Y + G V+ A ++F  M
Sbjct: 172 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 231

Query: 145 PVRNLI-TWNSMISGFAQNGRGE-------------------------------EALRIF 172
           P R++I TWN+MISGF++ G  E                               EAL IF
Sbjct: 232 PDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIF 291

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
             M +   +P       VLSAC+++G +D+GR    +  K   I+        +VD+  +
Sbjct: 292 HQMQKEKIRPRKFVLPSVLSACANLGALDQGR-WIHTYAKRNSIQLDGVLGTSLVDMYAK 350

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
            G ++ A  + E    +  SS W  ++G       A  A  +  K M++ P+
Sbjct: 351 CGRIDLAWEVFEKMSNKEVSS-WNAMIGGLAMHGRAEDAIDLFSK-MDIYPN 400



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 7/175 (4%)

Query: 2   LKQGKEVH--AKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           L QG+ +H  AK  ++ L G  V+ +SLVDMY KCG +D +  VF+KM  K   S +A++
Sbjct: 319 LDQGRWIHTYAKRNSIQLDG--VLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMI 376

Query: 60  QGYCQTGDFESVIRIFREME-EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            G    G  E  I +F +M+   +  +F  VL ACA    ++ G  +     +  G +  
Sbjct: 377 GGLAMHGRAEDAIDLFSKMDIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQ 436

Query: 119 IIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRI 171
           I     +VDL  + G +  A ++   +P       W +++    ++G  E   R+
Sbjct: 437 IEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERV 491


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 213/337 (63%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK +H  V+ LG+ G   V +SL++MYGK G +D + ++F++M  ++ VS ++++  
Sbjct: 180 LDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVI 239

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           +   G  E  + +F  M+      D  +   +LRAC      R  + +H  YI R G   
Sbjct: 240 HNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHA-YIHRCGFNA 298

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+II +AL++LYAK G ++ +  IF ++  R+ I W +M++G+A +  G EA+++FD M 
Sbjct: 299 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMV 358

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G + DHV+F  +LSACSH GL++ G+K+F  M++ YR++P+++HY+CMVDLLGR+G L
Sbjct: 359 KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRL 418

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E+A  LI++      S +W  LLGAC  + N  + + VA++++ L P  H +Y++L N+Y
Sbjct: 419 EDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIY 478

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A G W DA K+R LMK   + + PG S+IE  +K++
Sbjct: 479 SAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIH 515



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 17/282 (6%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +HA+VI      +  +   LV MY K G  +++ R+FD+M  K+ VS ++L+ G    G 
Sbjct: 84  IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 143

Query: 68  FESVIRIF--------REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             + +  F        R+  E+ L S   V+ ACA + AL  GK +H   ++        
Sbjct: 144 LGACLNAFCRMRTESGRQPNEVTLLS---VVSACADMGALDEGKSLHGVVVKLGMSGKAK 200

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+++Y K G +D A Q+F +MPVR+L++WNSM+     NG  E+ + +F+ M   G
Sbjct: 201 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 260

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PD  + + +L AC+  GL  R  +   +          I     +++L  + G L  +
Sbjct: 261 INPDQATMVALLRACTDTGL-GRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNAS 319

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281
           E + E    R D   W  +L         H   R A K+ +L
Sbjct: 320 EDIFEEIKDR-DRIAWTAMLAGYAV----HACGREAIKLFDL 356


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 135/337 (40%), Positives = 198/337 (58%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GKE+H  V+   +  +  V S+L+ MY  C  ++ +  VF ++  ++ V  ++++  
Sbjct: 515 LKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISA 574

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q+G   + + + REM     E++  +    L AC+ LAALR GKE+H Q+I R G   
Sbjct: 575 CAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH-QFIIRCGLDT 633

Query: 118 V-IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              I ++L+D+Y +CG +  + +IF  MP R+L++WN MIS +  +G G +A+ +F    
Sbjct: 634 CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFR 693

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+H++F  +LSACSH GLI+ G K+F  M  EY + P +E Y CMVDLL RAG  
Sbjct: 694 TMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQF 753

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            E    IE      ++++W  LLGAC    N  +AE  A+ + EL+P    +YVL+ N+Y
Sbjct: 754 NETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIY 813

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A GRW DA KIR LMK  GV K PG SWIE   KL+
Sbjct: 814 SAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLH 850



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 131/231 (56%), Gaps = 6/231 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G +VHA+++  G+     + S L+++Y + G V+++ R+FDKM ++N  S +A+++ 
Sbjct: 105 LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 164

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           YC  GD+E  I++F     E    D F F  V +AC+ L   R+GK+V+  Y+   G + 
Sbjct: 165 YCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY-DYMLSIGFEG 223

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  ++ +++D++ KCG +D A + F ++  +++  WN M+SG+   G  ++AL+   DM 
Sbjct: 224 NSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMK 283

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
             G KPD V++  ++S  +  G  +   K+F  M      KP +  +  ++
Sbjct: 284 LSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALI 334



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 166/358 (46%), Gaps = 53/358 (14%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L+ G+E+H   I +  L  +++V +SLVD Y KC  V+ + R F  + + + VS +A+L 
Sbjct: 378 LRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA 437

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSF-GIV-------------------------- 89
           GY   G  E  I +  EM+    E D+ ++ G+V                          
Sbjct: 438 GYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDP 497

Query: 90  --------LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
                   L AC  +  L+LGKE+H   +R        + SAL+ +Y+ C  ++ A  +F
Sbjct: 498 NTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVF 557

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
            ++  R+++ WNS+IS  AQ+GR   AL +  +M     + + V+ +  L ACS +  + 
Sbjct: 558 SELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALR 617

Query: 202 RGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
           +G++       ++ I+  ++      N ++D+ GR G ++++  + +    R D   W V
Sbjct: 618 QGKE-----IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR-DLVSWNV 671

Query: 258 LLGACTTFRNAHVAERVAK--KIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           ++           A  + +  + M LKP+ H+++  L +     G   + +K   +MK
Sbjct: 672 MISVYGMHGFGMDAVNLFQXFRTMGLKPN-HITFTNLLSACSHSGLIEEGWKYFKMMK 728



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 122/270 (45%), Gaps = 76/270 (28%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM----------------- 47
           GK+V+  ++++G  GN  V+ S++DM+ KCG +D + R F+++                 
Sbjct: 209 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 268

Query: 48  ------------------LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIV 89
                             +K + V+ +A++ GY Q+G FE   + F EM  +  F   +V
Sbjct: 269 KGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVV 328

Query: 90  ----------------------------------------LRACAGLAALRLGKEVHCQY 109
                                                   + AC  L+ LR G+E+H   
Sbjct: 329 SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYC 388

Query: 110 IRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
           I+      D+++ ++LVD YAKC  V+ A + F  +   +L++WN+M++G+A  G  EEA
Sbjct: 389 IKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEA 448

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           + +  +M   G +PD +++ G+++  +  G
Sbjct: 449 IELLSEMKFQGIEPDIITWNGLVTGFTQYG 478



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 110/228 (48%), Gaps = 13/228 (5%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  +L+ C  L  LRLG +VH Q +         + S L+++Y + GCV+ A ++F +M 
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN+ +W +++  +   G  EE +++F  M   G +PDH  F  V  ACS +     G+ 
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 206 HFASMTKEYRIKPKIEHYNC----MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            +     +Y +    E  +C    ++D+  + G ++ A    E  + + D  +W +++  
Sbjct: 212 VY-----DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSG 265

Query: 262 CTTFRNAHVAERVAK--KIMELKPDCHLSYVLLDNVYRAVGRWNDAFK 307
            T+      A +     K+  +KPD  +++  + + Y   G++ +A K
Sbjct: 266 YTSKGEFKKALKCISDMKLSGVKPD-QVTWNAIISGYAQSGQFEEASK 312


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 197/336 (58%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++ G+ VH   +  G    +V + SSLVDMYGKC   D++ +VFD+M  +N V+ +AL+ 
Sbjct: 220 VRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIA 279

Query: 61  GYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q+  F+  + +F EM + D+     +   VL ACA + AL  G+ VHC  I+ S   
Sbjct: 280 GYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEI 339

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +    + L+DLY KCGC++ A  +F ++  +N+ TW +MI+GFA +G   +A  +F  M 
Sbjct: 340 NTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTML 399

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                P+ V+F+ VLSAC+H GL++ GR+ F SM   + ++PK +HY CMVDL GR GLL
Sbjct: 400 SSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLL 459

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA+ LIE       + +W  L G+C   ++  + +  A ++++L+P     Y LL N+Y
Sbjct: 460 EEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLY 519

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
                W++  ++R  MK   V K PG SWIE   KL
Sbjct: 520 SESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKL 555



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 133/243 (54%), Gaps = 6/243 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           + HA ++  GL  +  V +SL+  Y   GL D + R+FD    K+ V+ +A++ G+ + G
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIE 121
                +  F EM++  +     +   VL+A   +  +R G+ VH  Y+     K DV I 
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           S+LVD+Y KC C D A ++F +MP RN++TW ++I+G+ Q+   ++ + +F++M +    
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA 303

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+  +   VLSAC+H+G + RGR+    M K   I+        ++DL  + G LEEA  
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYMIKN-SIEINTTAGTTLIDLYVKCGCLEEAIL 362

Query: 242 LIE 244
           + E
Sbjct: 363 VFE 365



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 1/158 (0%)

Query: 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           + H   ++     D  + ++L+  Y+  G  DFA ++F     ++++TW +MI GF +NG
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
              EA+  F +M + G   + ++ + VL A   +  +  GR       +  R+K  +   
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           + +VD+ G+    ++A+ + +    R+  + W  L+  
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVT-WTALIAG 280


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 202/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +  G+++HA +I   L  ++ V S+L+DMY KC  +  +  VFD+M +KN VS +A++ G
Sbjct: 283 INDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVG 342

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y QTG     ++IF +M+    + D ++ G  + ACA +++L  G + H + I       
Sbjct: 343 YGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHY 402

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++LV LY KCG +D + ++F +M VR+ ++W +M+S +AQ GR  EA+++FD M +
Sbjct: 403 ITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQ 462

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+  GV+SACS  GL+++G+++F  M  EY I P   HY+CM+DL  R+G +E
Sbjct: 463 LGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIE 522

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I     R D+  W  LL AC    N  + +  A+ ++EL P     Y LL ++Y 
Sbjct: 523 EAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYA 582

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G+W+   ++R  MK   V+K PG+SWI+   KL+
Sbjct: 583 SKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLH 618



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 166/320 (51%), Gaps = 46/320 (14%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM----------------- 47
           GK++H +VI LG    ++V S L+DMY K G + ++ +VF  +                 
Sbjct: 155 GKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLA 214

Query: 48  -------------LKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVL 90
                        ++K+SVS SA+++G  Q G  +  I  FREM+    ++D + FG VL
Sbjct: 215 CGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVL 274

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
            AC GL A+  G+++H   IR +    + + SAL+D+Y KC C+ +A  +F +M  +N++
Sbjct: 275 PACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 334

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           +W +M+ G+ Q GR  EA++IF DM   G  PDH +    +SAC+++  ++ G +     
Sbjct: 335 SWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKA 394

Query: 211 TKEYRIKPKIEHY----NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
                I   + HY    N +V L G+ G ++++  L    + R + S W  ++ A   F 
Sbjct: 395 -----ITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVS-WTAMVSAYAQFG 448

Query: 267 NAHVAERVAKKIME--LKPD 284
            A  A ++  K+++  LKPD
Sbjct: 449 RAVEAIQLFDKMVQLGLKPD 468



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 131/282 (46%), Gaps = 36/282 (12%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           N+   ++L+  Y K G + E  R F+K+  ++ V+ + L++GY  +G   + ++ +  M 
Sbjct: 68  NLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 127

Query: 79  ----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
                 +   +   +L+  +    + LGK++H Q I+      +++ S L+D+Y+K GC+
Sbjct: 128 KDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCI 187

Query: 135 DFAHQIFLQMPVRNL------------------------------ITWNSMISGFAQNGR 164
             A ++F  +  RN                               ++W++MI G AQNG 
Sbjct: 188 SDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGM 247

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
            +EA+  F +M   G K D   F  VL AC  +G I+ GR+  A + +   ++  I   +
Sbjct: 248 EKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRT-NLQDHIYVGS 306

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
            ++D+  +   L  A+T+ +    ++  S   +++G   T R
Sbjct: 307 ALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGR 348


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/333 (38%), Positives = 201/333 (60%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++HA  +      +V V S+L+DMY +CG +D +  VFDK+  KN VS +AL+ G+ +
Sbjct: 171 GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFAR 230

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD E+ + +F EM+    E   F++  +  A AG+ AL  GK VH   I+        +
Sbjct: 231 KGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFV 290

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + ++D+YAK G +  A ++F ++  ++L+TWNSM++ FAQ G G+EA+  F++M + G 
Sbjct: 291 GNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGI 350

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             + +SF+ +L+ACSH GL+  G KH+  M KEY ++P+IEHY  +VDLLGRAGLL  A 
Sbjct: 351 YLNQISFLCILTACSHGGLVKEG-KHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYAL 409

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I        +++W  LL AC   +NA V +  A  + +L PD     VLL N+Y + G
Sbjct: 410 VFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTG 469

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            W+ A ++R +MK +GVKK P  SW+E  + ++
Sbjct: 470 HWDAAARVRKMMKATGVKKEPACSWVEIENSVH 502



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 149/270 (55%), Gaps = 10/270 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   +++HA + +    G+  +++SL+ +Y KCG V E+H+VFDKM  K+ VS ++L+ G
Sbjct: 67  LDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAG 126

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q       I +   M     + + F+F  +L+A    A   +G ++H   ++    +D
Sbjct: 127 YAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHALAVKCDWHED 186

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YA+CG +D A  +F ++  +N ++WN++ISGFA+ G GE AL +F +M  
Sbjct: 187 VYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQR 246

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGL 235
            G +  H ++  + SA + +G +++G+   A M K    + K+  +  N M+D+  ++G 
Sbjct: 247 NGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKS---RQKLTAFVGNTMLDMYAKSGS 303

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTF 265
           + +A  + E      D   W  +L A   +
Sbjct: 304 MIDARKVFERV-LNKDLVTWNSMLTAFAQY 332



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 89/175 (50%), Gaps = 12/175 (6%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           + ACA    L   +++H          D  ++++L+ LY KCG V  AH++F +M  +++
Sbjct: 58  ITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDM 117

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC-----SHMGLIDRGR 204
           ++W S+I+G+AQN    EA+ +   M +G  KP+  +F  +L A      S +G    G+
Sbjct: 118 VSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIG----GQ 173

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            H  ++  ++     +   + ++D+  R G ++ A  + +  D ++  S W  L+
Sbjct: 174 IHALAVKCDWHEDVYVG--SALLDMYARCGKMDMATAVFDKLDSKNGVS-WNALI 225



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 5/162 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VHA +I         V ++++DMY K G + ++ +VF+++L K+ V+ +++L  
Sbjct: 269 LEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTA 328

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +  +  F EM +  ++    SF  +L AC+    ++ GK         +   +
Sbjct: 329 FAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMIKEYNLEPE 388

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
           +     +VDL  + G +++A     +MP+      W ++++ 
Sbjct: 389 IEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAA 430


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/330 (39%), Positives = 191/330 (57%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G +VH+  +   L  ++ V S LVDMY KCG +  +  +F++M +++ V  ++++ G
Sbjct: 432 LDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISG 491

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                  E     F++M    +     S+  ++ +CA L+++  G+++H Q ++    ++
Sbjct: 492 LAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQN 551

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YAKCG +D A   F  M  +N++ WN MI G+AQNG GE+A+ +F+ M  
Sbjct: 552 VYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLT 611

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +PD V+FI VL+ CSH GL+D     F SM   Y I P  EHY C++D LGRAG L 
Sbjct: 612 TEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLV 671

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E E LI+N  C+ D  +WEVLL AC    NA + E  AK +  L P     YVLL N+Y 
Sbjct: 672 EVEALIDNMPCKDDPIVWEVLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYA 731

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           ++GR  DA  +R LM   GV K  G SWI+
Sbjct: 732 SLGRHGDASGVRALMSSRGVVKGRGYSWID 761



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 146/277 (52%), Gaps = 20/277 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+  H   + +GL  N+ VE++L+ MY KCG V+++ R+FD M   N VS +A++ G
Sbjct: 156 LDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGG 215

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAG--------LAALRLGKEVHCQY 109
             Q G  +  +R+F  M      +D  +   VL +CA         + A RLG+ +H   
Sbjct: 216 LVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALI 275

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           +R+    D  + ++L+D+Y KC  +D A ++F  +P  + ++WN +I+GF Q G   +AL
Sbjct: 276 VRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKAL 335

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            + + M E G++P+ V++  +L++C     +   R  F  ++     +P +  +N ++  
Sbjct: 336 EVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKIS-----RPSVTTWNTLLSG 390

Query: 230 LGRAGLLEEAETL---IENADCRHDSSLWEVLLGACT 263
             +  L ++   L   +++ + + D +   V+L +C+
Sbjct: 391 YCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCS 427



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 110/206 (53%), Gaps = 5/206 (2%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAA 98
           +FDK+ + +  + + LL GYCQ    +  + +FR M+    + D  +  ++L +C+ L  
Sbjct: 372 MFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGI 431

Query: 99  LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
           L LG +VH   +R     D+ + S LVD+Y+KCG +  A  IF +M  R+++ WNSMISG
Sbjct: 432 LDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISG 491

Query: 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP 218
            A +   EEA   F  M   G  P   S+  ++++C+ +  + +GR+  A + K+     
Sbjct: 492 LAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKD-GYDQ 550

Query: 219 KIEHYNCMVDLLGRAGLLEEAETLIE 244
            +   + ++D+  + G +++A    +
Sbjct: 551 NVYVGSALIDMYAKCGNMDDARVFFD 576



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 35/220 (15%)

Query: 12  VITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESV 71
           V+  GL  +  + + LV++Y   GL  ++ R F  + + N+ S +A L    + GD ++ 
Sbjct: 34  VLAAGLGADTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAA 93

Query: 72  IRIFREM----------------------EEIDL-------------FSFGIVLRACAGL 96
             +  EM                      E ++L             F+   VL AC  +
Sbjct: 94  RALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAV 153

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
           AAL  G+  H   ++    +++ +E+AL+ +Y KCG V+ A ++F  M   N +++ +M+
Sbjct: 154 AALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMM 213

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
            G  Q G  ++ALR+F  M   G + D V+   VL +C+ 
Sbjct: 214 GGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQ 253



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 46/76 (60%)

Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
           + G +D A  +  +MP RN+++WN++I+  A++ R  EAL +++ M   G  P H +   
Sbjct: 86  RAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLAS 145

Query: 190 VLSACSHMGLIDRGRK 205
           VLSAC  +  +D GR+
Sbjct: 146 VLSACGAVAALDDGRR 161


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 132/344 (38%), Positives = 220/344 (63%), Gaps = 10/344 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM----LKKNSVSSSA 57
           L++G+EVH++ + LGL  N +V   ++++YGKCG + ++ RVF++M    + K++V  +A
Sbjct: 146 LREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTA 205

Query: 58  LLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           ++ G+ +  +    +  FR M+  ++    F+   VL AC+ L AL +G+ VH  Y+R+ 
Sbjct: 206 MIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVH-SYMRKF 264

Query: 114 GCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
             + ++ + +AL+++Y++CG +D A  +F +M  R++IT+N+MISG + NG+  +A+ +F
Sbjct: 265 EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 324

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
             M     +P +V+F+GVL+ACSH GL+D G K F SMT++Y ++P+IEHY CMVDLLGR
Sbjct: 325 RVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGR 384

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
            G LEEA  LI       D  +   LL AC   +N  + E+VAK + +       +YVLL
Sbjct: 385 VGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLL 444

Query: 293 DNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            +VY + G+W +A ++R  MK +G++K PG S IE N++++  L
Sbjct: 445 SHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFL 488



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 128/251 (50%), Gaps = 9/251 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + Q   +HA++I  G   +  +   L+    KC  +D + R+F      N    +AL+ G
Sbjct: 45  INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG 104

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +  +G++   I+++  M       D +    +L+AC    ALR G+EVH + ++     +
Sbjct: 105 FVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSN 164

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMP----VRNLITWNSMISGFAQNGRGEEALRIFD 173
            ++   +++LY KCG +  A ++F +MP     ++ + W +MI GF +N     AL  F 
Sbjct: 165 RLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFR 224

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M     +P+  + + VLSACS +G ++ GR   + M K + I+  +   N ++++  R 
Sbjct: 225 GMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK-FEIELNLFVGNALINMYSRC 283

Query: 234 GLLEEAETLIE 244
           G ++EA+T+ +
Sbjct: 284 GSIDEAQTVFD 294


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 201/357 (56%), Gaps = 25/357 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSS----- 56
           L  G E+H+ ++  G+  N  V  SL+DMY KCG+++E+ ++  +  ++ +VS +     
Sbjct: 456 LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELE 515

Query: 57  ---------------ALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLA 97
                          +++ GY      E    +F  M E+    D F++  VL  CA LA
Sbjct: 516 KMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLA 575

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
           +  LGK++H Q I++    DV I S LVD+Y+KCG +  +  +F +   R+ +TWN+MI 
Sbjct: 576 SAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMIC 635

Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
           G+A +G+GEEA+++F+ M     KP+HV+FI +L AC+HMGLID+G ++F  M ++Y + 
Sbjct: 636 GYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLD 695

Query: 218 PKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR-NAHVAERVAK 276
           P++ HY+ MVD+LG++G ++ A  LI       D  +W  LLG CT  R N  VAE    
Sbjct: 696 PQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATA 755

Query: 277 KIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            ++ L P    +Y LL NVY   G W     +R  M+   +KK PG SW+E   +L+
Sbjct: 756 ALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELH 812



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 6/261 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H  V+ +G   +VV  S+L+DMY K     ES RVF  + +KNSVS SA++ G  Q
Sbjct: 157 GMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQ 216

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                  ++ F+EM++++       +  VLR+CA L+ LRLG ++H   ++     D I+
Sbjct: 217 NNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIV 276

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A +D+YAKC  +  A  +F +    N  ++N+MI+G++Q   G +AL +F  +   G 
Sbjct: 277 RTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL 336

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D +S  GV  AC+ +  +  G + +    K   +   +   N  +D+ G+   L EA 
Sbjct: 337 GFDEISLSGVFRACALVKGLSEGLQIYDLAIKS-SLSLDVCVANAAIDMYGKCQALAEAF 395

Query: 241 TLIENADCRHDSSLWEVLLGA 261
            + +    R D+  W  ++ A
Sbjct: 396 RVFDEMR-RRDAVSWNAIIAA 415



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 128/246 (52%), Gaps = 8/246 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++HA  +      + +V ++ +DMY KC  + ++  +FDK    N  S +A++ G
Sbjct: 255 LRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITG 314

Query: 62  YCQTG-DFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    F++++   R M      D  S   V RACA +  L  G +++   I+ S   D
Sbjct: 315 YSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLD 374

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +A +D+Y KC  +  A ++F +M  R+ ++WN++I+   QNG+G E L +F  M  
Sbjct: 375 VCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLR 434

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC-MVDLLGRAGLL 236
              +PD  +F  VL AC+  G +  G +  +S+ K            C ++D+  + G++
Sbjct: 435 SRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNS--SVGCSLIDMYSKCGMI 491

Query: 237 EEAETL 242
           EEAE +
Sbjct: 492 EEAEKI 497



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 118/233 (50%), Gaps = 7/233 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           +VV  + +++ Y K   + ++   F+ M  ++ VS +++L GY Q G+    I +F +M 
Sbjct: 71  DVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMG 130

Query: 79  ---EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               E D  +F I+L+ C+ L    LG ++H   +R     DV+  SAL+D+YAK     
Sbjct: 131 RAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFV 190

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            + ++F  +P +N ++W+++I+G  QN     AL+ F +M +         +  VL +C+
Sbjct: 191 ESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA 250

Query: 196 HMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
            +  +  G + H  ++  ++     +      +D+  +   +++A+ L + ++
Sbjct: 251 ALSELRLGGQLHAHALKSDFAADGIVR--TATLDMYAKCDNMQDAQILFDKSE 301



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 31/134 (23%)

Query: 93  CAGLAALRLGKEVHCQYI-------------------------------RRSGCKDVIIE 121
           CA   AL LGK+ H   I                                R   +DV+  
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + +++ YAK   +  A   F  MPVR++++WNSM+SG+ QNG   +++ +F DM   GT+
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 182 PDHVSFIGVLSACS 195
            D  +F  +L  CS
Sbjct: 136 FDGRTFAIILKVCS 149


>gi|297742226|emb|CBI34375.3| unnamed protein product [Vitis vinifera]
          Length = 814

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 198/336 (58%), Gaps = 4/336 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +Q  ++H+ ++ LG   +  + S L+  YGKC ++ ES RV+  + + N +  +A+    
Sbjct: 435 EQAMQIHSYIVKLGFIVDDSMLSCLITAYGKCNMICESKRVYSDISQINVLHLNAMAATL 494

Query: 63  CQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G     +++F    R  +E+D  +  IVL+AC  L  L  G+ +H   ++    +D 
Sbjct: 495 VHAGCHADALKLFQTGWRLHQEVDCITLSIVLKACGALTDLEYGRNIHSMALKSGMSQDN 554

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            +ESA++D+Y KCG VD A + F+ +   NL+ WN+M+ G+AQ+G   E   +F+ M E 
Sbjct: 555 FVESAVIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAMVMGYAQHGCYHEVFELFNKMLEL 614

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD ++++GVL++C H GL++    + +SM + + + P +EHY CM+DL GR GLLE+
Sbjct: 615 GIQPDEITYLGVLNSCCHAGLVNEAHTYLSSMLELHGVVPCLEHYACMIDLFGRVGLLED 674

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A+  I+      D+ +W++LL  C    N  + E  AKK++EL+P+   +YVLL N+Y +
Sbjct: 675 AKRTIDQMPIMPDAQIWQILLSGCNIHGNVDLGEVAAKKLIELQPENDSAYVLLSNLYAS 734

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNH 334
            GRWN   K+R +MK   + K PG SWI+    +++
Sbjct: 735 AGRWNAVGKLRRVMKKKIICKEPGSSWIQVRGSVHY 770



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 148/323 (45%), Gaps = 10/323 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G+++       G      V ++L+ MYGKCG +  +  +FD+ML  +SVS ++L+ G
Sbjct: 333 LKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAG 392

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  +  +++F +M +  L    ++   +L   A         ++H   ++     D
Sbjct: 393 YAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFPEQAMQIHSYIVKLGFIVD 452

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + S L+  Y KC  +  + +++  +   N++  N+M +     G   +AL++F     
Sbjct: 453 DSMLSCLITAYGKCNMICESKRVYSDISQINVLHLNAMAATLVHAGCHADALKLFQTGWR 512

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              + D ++   VL AC  +  ++ GR +  SM  +  +       + ++D+  + G ++
Sbjct: 513 LHQEVDCITLSIVLKACGALTDLEYGR-NIHSMALKSGMSQDNFVESAVIDVYCKCGTVD 571

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPDCHLSYVLLDNV 295
           EA     N   +++   W  ++         H    +  K++EL  +PD  ++Y+ + N 
Sbjct: 572 EAAKTFMNVS-KNNLVAWNAMVMGYAQHGCYHEVFELFNKMLELGIQPD-EITYLGVLNS 629

Query: 296 YRAVGRWNDAFK-IRTLMKYSGV 317
               G  N+A   + ++++  GV
Sbjct: 630 CCHAGLVNEAHTYLSSMLELHGV 652



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 117/217 (53%), Gaps = 9/217 (4%)

Query: 2   LKQGKEVHAKVITLGL-CG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVS-SSAL 58
           +++G++V    + +GL CG ++ + ++L++MY +CG   ++ ++FD+M + + VS +  +
Sbjct: 233 VREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIKMFDEMTEPDVVSWTERI 292

Query: 59  LQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVH--CQYIRRSGCK 116
              Y     FE    +     E++ +    VL A      L+ G+++   CQ   ++G  
Sbjct: 293 GAAYDAIEAFELFRLVLSGNMEVNEYMLINVLSAMREPKLLKSGRQIQGLCQ---KAGYL 349

Query: 117 DVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            V  + +AL+ +Y KCG +  A  IF +M   + ++WNS+I+G+A+NG  ++AL++F  M
Sbjct: 350 LVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQM 409

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            +   +P+  +   +L   ++    ++  +  + + K
Sbjct: 410 RDYLLQPNKYTLASILEVAANSNFPEQAMQIHSYIVK 446



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +H+  +  G+  +  VES+++D+Y KCG VDE+ + F  + K N V+ +A++ G
Sbjct: 535 LEYGRNIHSMALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAMVMG 594

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G +  V  +F +M E+    D  ++  VL +C     +          +   G   
Sbjct: 595 YAQHGCYHEVFELFNKMLELGIQPDEITYLGVLNSCCHAGLVNEAHTYLSSMLELHGVVP 654

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISG 158
            +   A ++DL+ + G ++ A +   QMP+  +   W  ++SG
Sbjct: 655 CLEHYACMIDLFGRVGLLEDAKRTIDQMPIMPDAQIWQILLSG 697



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 10/195 (5%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           + +A  +  G   +  + S +V+ +   G    + R        ++VS ++L+ GY +  
Sbjct: 41  QSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPYPDTVSWNSLISGYARFR 100

Query: 67  DFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
               V  +F    R     D FS   +++ C  L       EV      + G  +  + S
Sbjct: 101 QPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCGVLEQ----NEVAHGVCLKMGLLNGFVVS 156

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM--TEGGT 180
            L+D YAK G VD A + F +  + + + W +M+ GF  NG  E+   +F +M     G 
Sbjct: 157 GLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLGL 216

Query: 181 KPDHVSFIGVLSACS 195
           + +  S   VL A S
Sbjct: 217 ELNEFSLTSVLGALS 231



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           LRA A L    L  + +  +++     D  + S +V+ +A  G    A +  L  P  + 
Sbjct: 27  LRASASLLHPPLTDQSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPYPDT 86

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           ++WNS+ISG+A+  +      +F+ +   G  PD  S   ++  C
Sbjct: 87  VSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGC 131


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 205/334 (61%), Gaps = 6/334 (1%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L  G+ +H  V+  GL  +  V ++LVDMY KC +++++  +FD M  K+ V+ + ++ G
Sbjct: 1197 LDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGG 1256

Query: 62   YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
            Y + G+ +  + +F  + E     D  +   ++ ACA L A+   + VH +Y+ R+    
Sbjct: 1257 YAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVH-EYVNRNRFSL 1315

Query: 117  DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            DVI+ +A++D+YAKCG VD A +IF  M  +N+I+W++MI+ +  +G+G++AL +F  M 
Sbjct: 1316 DVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMML 1375

Query: 177  EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              G  P++++F+ +L ACSH GL++ G    + M + + ++P I+H+ CMVDLLGRAG L
Sbjct: 1376 SSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQL 1435

Query: 237  EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
             EA   IEN     D  LW  LLGAC   +   +AE+ AK ++EL+P    +Y+LL N+Y
Sbjct: 1436 TEAFRFIENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNYILLSNIY 1495

Query: 297  RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
               G+W D  KIR LM    +KK+PG +WIE  S
Sbjct: 1496 ANAGQWKDVAKIRDLMTKRKLKKIPGYTWIELKS 1529



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 159/301 (52%), Gaps = 22/301 (7%)

Query: 4    QGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
            Q K++HA + T   L  N+ V + L+ +Y     + +++ +FD+M +KN VS S ++ G+
Sbjct: 1097 QIKQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGF 1156

Query: 63   CQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
             + G+F    + F+E+     + D ++   V++AC    AL +G+ +HC  ++     D 
Sbjct: 1157 VKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLDH 1216

Query: 119  IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
             + +ALVD+YAKC  ++ A  +F  MP ++L+TW  MI G+A+ G  +E+L +FD + E 
Sbjct: 1217 FVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREE 1276

Query: 179  GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY----RIKPKIEHYNCMVDLLGRAG 234
            G  PD ++ + +++AC+ +G +++ R        EY    R    +     M+D+  + G
Sbjct: 1277 GFVPDKIAMVSIVNACAKLGAMNKAR-----FVHEYVNRNRFSLDVILGTAMIDMYAKCG 1331

Query: 235  LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
             ++ A  + +N   ++  S W  ++        A+      KK +EL P    S +L +N
Sbjct: 1332 DVDSAREIFDNMHHKNVIS-WSAMIA-------AYGYHGQGKKALELFPMMLSSGILPNN 1383

Query: 295  V 295
            +
Sbjct: 1384 I 1384


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/336 (40%), Positives = 209/336 (62%), Gaps = 11/336 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G++ HA++  LGL  +V V +SL+ +Y  CG +  + +VF+KM  ++ VS + ++  
Sbjct: 142 LSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDA 201

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG---C 115
           Y Q+G FE+ +++F EM+   E D ++   ++ ACAG+ AL LG   H   +R++     
Sbjct: 202 YVQSGLFENALKLFVEMQNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMA 261

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV+I S+LVD+Y+KCG +  A Q+F  MP  +L +WNSMI   A +GRG+ AL+ F  +
Sbjct: 262 GDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRL 321

Query: 176 TE-GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
            E     P+ V+F+GVLSAC+H G++  GRK+F  M  +Y+I+P++EHY C+VDLL R+G
Sbjct: 322 VEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLLSRSG 381

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHV--AERVAKKIMELKPDCHLS-YVL 291
            ++EA  L+ N   + D+ +W  LL AC   +NA V  +E VA KI++ +       YV+
Sbjct: 382 FIDEALELVANMHIKPDAVIWRSLLDACYK-QNAGVELSEEVAFKILQSEKTISSGVYVM 440

Query: 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           L  VY +  +WND   IR +M   GV K PG S IE
Sbjct: 441 LSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIE 476



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 150/303 (49%), Gaps = 37/303 (12%)

Query: 2   LKQGKEVHAKVI--------TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSV 53
           L + K++HA+ I        +L L   ++  SSL+D    C       RVF+++   NS 
Sbjct: 38  LSKLKQIHAQAIRNFSTHNSSLFLYSRILHVSSLIDFDYAC-------RVFNQIDNPNSF 90

Query: 54  SSSALLQGYCQTGDF-ESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHC 107
             + L+    ++ D  E  I IF  M      E D  +F  +L+ACA + AL  G++ H 
Sbjct: 91  MWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHA 150

Query: 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
           Q  +     DV + ++L+ LYA CGC+  A ++F +MP+R+L++WN MI  + Q+G  E 
Sbjct: 151 QIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFEN 210

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG--------RKHFASMTKEYRIKPK 219
           AL++F +M +   +PD  +   ++SAC+ +G +  G        RK   +M  +  I   
Sbjct: 211 ALKLFVEM-QNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLIN-- 267

Query: 220 IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM 279
               + +VD+  + G L  A+ + E    +HD + W  ++ A         A +   +++
Sbjct: 268 ----SSLVDMYSKCGSLRMAQQVFETMP-KHDLNSWNSMILALAMHGRGQAALQCFSRLV 322

Query: 280 ELK 282
           E++
Sbjct: 323 EME 325


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/337 (37%), Positives = 211/337 (62%), Gaps = 6/337 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--GLVDESHRVFDKMLKKNSVSSSALLQ 60
             G+ +H  VI  G   +V + ++L+ MY K   G + E+  +F+ +  K+ VS +++L 
Sbjct: 319 NNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILT 378

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G  QTG  E  ++ F  M     +ID +SF  VLR+C+ LA  +LG+++H   ++     
Sbjct: 379 GLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLES 438

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + S+L+ +Y+KCG ++ A + F +    + ITWN+++ G+AQ+G+   AL +F  M 
Sbjct: 439 NEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLME 498

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               K DH++F+ VL+ACSH+GL+++G K    M  +Y + P++EHY C VDL GR+G L
Sbjct: 499 XKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRL 558

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA+ LIE    + D+++W+  LGAC +  N  +A +VA  ++E++P+ H +YVLL N+Y
Sbjct: 559 EEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMY 618

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             + RW++  K++ LMK  GVKK+PG SWIE N+ ++
Sbjct: 619 GNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVNNNVH 655



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 137/264 (51%), Gaps = 19/264 (7%)

Query: 9   HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF 68
           H+  + LG   +V   +++++ Y KC  +  +  +FD+M  ++SVS + ++ G+   G+ 
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 69  ESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           E+   + R M     E+D ++FG +L+  A      LG++VH   I+    ++V   SAL
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D+YAKC  ++ A+  FL +   N ++WN+MI+G+AQ G  E A  + D M + G K D 
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYR---IKPKIEHYNCMVDLL----GRAGLLE 237
            ++  +L       L+D     F ++T +     IK  +E  N M + L     + G L+
Sbjct: 201 GTYAPLLP------LLDDA--DFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLD 252

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           +A+ + +++    D   W  LL A
Sbjct: 253 DAKRIFDSSAGIRDLVTWNSLLAA 276



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 138/266 (51%), Gaps = 6/266 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH+ +I +G   NV   S+L+DMY KC  +++++  F  + K N+VS +A++ GY Q
Sbjct: 118 GQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQ 177

Query: 65  TGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD E+   +     +E E++D  ++  +L          L  ++H + I+        +
Sbjct: 178 AGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTM 237

Query: 121 ESALVDLYAKCGCVDFAHQIF-LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
            +AL+  Y+KCG +D A +IF     +R+L+TWNS+++ +    + + A ++  DM E G
Sbjct: 238 CNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHG 297

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            +PD  S+  ++SAC +  + + GR  H   + + +     I +    + L    G ++E
Sbjct: 298 FEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKE 357

Query: 239 AETLIENADCRHDSSLWEVLLGACTT 264
           A  + E+ + +   S   +L G   T
Sbjct: 358 ALCIFESLEFKDRVSWNSILTGLSQT 383


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 214/377 (56%), Gaps = 42/377 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK VH  V  LGL  N+ +++ +V +Y  CG +  + +VFDKM +++ ++ + ++  
Sbjct: 129 VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIAR 188

Query: 62  YCQTGDFESVIRIFREMEE----------------------IDLF-------------SF 86
             + GD E   ++F EM E                      IDLF             + 
Sbjct: 189 LVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTV 248

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             VL ACA +  L LG+ +H  +  RSG  K++ + + L+D+Y KCGC++ A +IF  M 
Sbjct: 249 VAVLVACADMGNLVLGRRIH-DFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME 307

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            R +++W++MI+G A +GR E+AL +F+ M   G KP+ V+FIG+L ACSHMG++++GRK
Sbjct: 308 ERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRK 367

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +FASMT++Y I P+IEHY CMVDL  RAGLL+EA   I N     +  +W  LLG C   
Sbjct: 368 YFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVH 427

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG-----VKKM 320
           +N  +AE   + + +L P     YV+L N+Y   GRW D  ++R LM+  G     +++M
Sbjct: 428 KNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGTWEKLLQRM 487

Query: 321 PGKSWIEANSKLNHDLD 337
             K ++   S +  D++
Sbjct: 488 KLKGYVPNTSVVLLDME 504



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 128/265 (48%), Gaps = 43/265 (16%)

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           L+ + +       I +F  + E D+    ++   VL+AC+ L  +R GK VH  Y+ + G
Sbjct: 85  LRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVH-GYVEKLG 143

Query: 115 CK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN-------------------- 153
            + ++ +++ +V LYA CG +  A ++F +MP R++ITWN                    
Sbjct: 144 LQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFA 203

Query: 154 -----------SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
                      SMI G+AQ G+ +EA+ +F +M + G  P+ V+ + VL AC+ MG +  
Sbjct: 204 EMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVL 263

Query: 203 GRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           GR+ H  S    Y  +  I   N ++D+  + G LE+A  + +N + R   S W  ++  
Sbjct: 264 GRRIHDFSNRSGY--EKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVS-WSAMIAG 320

Query: 262 CTTFRNAHVAERVAKKIME--LKPD 284
                 A  A  +  K++   +KP+
Sbjct: 321 LAAHGRAEDALALFNKMINTGVKPN 345



 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 73/178 (41%), Gaps = 2/178 (1%)

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           K++H   ++ +     +  S +  + A      +A  IF  +    +  WN+ +  FA+ 
Sbjct: 32  KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEG 91

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
               +A+ +F  + E    PDH +   VL ACS + L  R  K      ++  ++  +  
Sbjct: 92  DSPADAISLFYRLREFDISPDHYTCSFVLKACSRL-LDVRNGKIVHGYVEKLGLQSNMFL 150

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
            N +V L    G +  A  + +    R D   W +++       +A  A ++  ++ E
Sbjct: 151 QNMIVHLYALCGEIGVARKVFDKMPQR-DVITWNIMIARLVKMGDAEGAYKLFAEMPE 207


>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
          Length = 502

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/334 (38%), Positives = 199/334 (59%), Gaps = 7/334 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H   + LGL  NVVV  +L+DMY K G + ++ RVFD+M ++++V+ + ++ GY +
Sbjct: 122 GSVLHGFAVRLGLLANVVVSGALLDMYAKTGTLGDAGRVFDEMPERDAVAWNCMVTGYAR 181

Query: 65  TGDFESVIRIFREME------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR-RSGCKD 117
            G  E  + +FR+ +        DL +   VL  CA    L  G+E+H +  R  +   D
Sbjct: 182 AGRSEETLELFRKAQIESAGMARDLRAVPSVLNVCADEGQLMKGREIHGRMARCLASSSD 241

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ +AL+D+Y KCG VD A  +F  M  +N+++W+S+IS +  +G G+EALR++++M  
Sbjct: 242 TVVGNALIDMYGKCGQVDGAQAVFASMEEKNVVSWSSLISCYGVHGMGKEALRVYEEMVS 301

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+ V+F+ +LS+CSH GL+  GR+ F SM K + ++P  +HY CMVDLLGRAG +E
Sbjct: 302 VGVKPNCVTFVSILSSCSHSGLVSDGRRIFESMRKVHAVEPTADHYACMVDLLGRAGAIE 361

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  L+        +SLW  LL AC    N  V E  A ++ EL+ D   +YV L  +Y 
Sbjct: 362 EAVGLVNEMPMEPGASLWGALLSACAIHNNVDVGEVAAYRLFELEEDNASNYVTLCGIYD 421

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           A+GR +    +R+ M+  G+ K PG SW+    +
Sbjct: 422 AIGRSDSVAGLRSRMRELGMVKTPGCSWVHVKGR 455



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 140/288 (48%), Gaps = 5/288 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++HA+ +  G   +  +++ LV +Y +CG +  +  VFD M   +  + + LL  
Sbjct: 22  LSPGAQLHAQALVGGRLPDTTLDTDLVLLYSRCGALHRAREVFDGMPSPSMHAYNVLLAA 81

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
                  + V R+       D +S   VLRACA      LG  +H   +R     +V++ 
Sbjct: 82  SPPDAAVKLVSRLVASGLRPDRYSVPAVLRACAESRDALLGSVLHGFAVRLGLLANVVVS 141

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF--DDMTEGG 179
            AL+D+YAK G +  A ++F +MP R+ + WN M++G+A+ GR EE L +F    +   G
Sbjct: 142 GALLDMYAKTGTLGDAGRVFDEMPERDAVAWNCMVTGYARAGRSEETLELFRKAQIESAG 201

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
              D  +   VL+ C+  G + +GR+    M +           N ++D+ G+ G ++ A
Sbjct: 202 MARDLRAVPSVLNVCADEGQLMKGREIHGRMARCLASSSDTVVGNALIDMYGKCGQVDGA 261

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDC 285
           + +  + + ++  S W  L+           A RV ++++   +KP+C
Sbjct: 262 QAVFASMEEKNVVS-WSSLISCYGVHGMGKEALRVYEEMVSVGVKPNC 308



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +LR CA   AL  G ++H Q +      D  +++ LV LY++CG +  A ++F  MP  +
Sbjct: 12  LLRRCAASGALSPGAQLHAQALVGGRLPDTTLDTDLVLLYSRCGALHRAREVFDGMPSPS 71

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           +  +N +++    +     A+++   +   G +PD  S   VL AC+
Sbjct: 72  MHAYNVLLAASPPDA----AVKLVSRLVASGLRPDRYSVPAVLRACA 114


>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
 gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
          Length = 648

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 132/330 (40%), Positives = 190/330 (57%), Gaps = 5/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++ H  V   G   +V V +S+VD YGKC  + ++  VFD M  +NSVS  +++  
Sbjct: 236 LSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVA 295

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E    ++    R  EE   F    +L  CAGL  L LG+ +H    R     +
Sbjct: 296 YAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTCAGLLGLDLGRALHAVAARSCIDAN 355

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + SALVD+Y KCG +  A Q+F +MP RNL+TWN+MI G+A  G    AL +FD+M  
Sbjct: 356 IFVASALVDMYGKCGGIQDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAVFDEMIM 415

Query: 178 G-GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           G  T P++++ + VL+ACS  GL   G + F +M + + I+P+IEHY C+VDLLGRAG+ 
Sbjct: 416 GRETAPNYITIVNVLTACSRGGLTKEGYELFQTMKQRFGIEPRIEHYACVVDLLGRAGME 475

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E+A  +I+    R   S+W  LLG C       +    A+K+ EL P    ++VLL N+ 
Sbjct: 476 EQAYEIIQGMPMRPSISVWGALLGGCKMHGKTELGRVAAEKLFELDPQDSGNHVLLSNML 535

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
            + GRW +A  +R  MK  G+KK PG+SWI
Sbjct: 536 ASAGRWAEATDVRKEMKNVGIKKDPGRSWI 565



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 16/306 (5%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G +VHA  +  G L  +  V  + +DMY K G +  + R+FD+M  +N V+ +A++    
Sbjct: 137 GPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNAV 196

Query: 64  QTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-KDV 118
             G     +  +  +       ++ S      ACAG+  L LG++ H  ++ + G  KDV
Sbjct: 197 LDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLGEQFH-GFVAKCGFDKDV 255

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +++VD Y KC C+  A  +F  M VRN ++W SM+  +AQNG  EEA  ++      
Sbjct: 256 SVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVYLGARRA 315

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +P       +L+ C+ +  +D GR   A   +   I   I   + +VD+ G+ G +++
Sbjct: 316 GEEPTDFMVSSLLTTCAGLLGLDLGRALHAVAARSC-IDANIFVASALVDMYGKCGGIQD 374

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM---ELKPDCHLSYVLLDNV 295
           AE +      R+  + W  ++G      +A  A  V  +++   E  P+    Y+ + NV
Sbjct: 375 AEQVFFEMPQRNLVT-WNAMIGGYAHIGDAWNALAVFDEMIMGRETAPN----YITIVNV 429

Query: 296 YRAVGR 301
             A  R
Sbjct: 430 LTACSR 435



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 100 RLGKEVHCQYIRR-SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
           RLG+  H + +R  +      I + LV+LY+K      A       P   ++++ + ISG
Sbjct: 30  RLGRAAHARALRLLAPALPPFICAHLVNLYSKLDLPGAAAAALAADPSPTVVSYTAFISG 89

Query: 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            AQ+ R  +AL  F  M   G +P+  +F     A +
Sbjct: 90  AAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAA 126


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 206/336 (61%), Gaps = 8/336 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK++HA  I  GL  ++ + ++L+DMY KCG +  +  +FD + +K+ VS + L+ G
Sbjct: 395 LKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLILG 453

Query: 62  YCQTG-DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q+   FES + +F+++     E D  SF   L AC  L++ + GKE+H   +RR    
Sbjct: 454 YSQSPWSFES-LNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSN 512

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + + L+ LY K G +D A +IF ++  +++ +WN+MI G+  +G+ + A  +FD M 
Sbjct: 513 HPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMK 572

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G   DHVS+I VLS CSH GL++RG+K+F+ M  +  ++P+  HY CMVDLLGR+G L
Sbjct: 573 DHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQ-NLEPQQMHYACMVDLLGRSGQL 631

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            E+  +I +     +S +W  LLGAC    N  +A+  A  + ELKP+    Y +L N+Y
Sbjct: 632 TESVEIILDMPFHANSDVWGALLGACRIHGNIELAQYAADHLFELKPEHSGYYSVLRNMY 691

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
              GRWN+A KIRTLMK   V+K P  SW+++ +KL
Sbjct: 692 AEAGRWNEAHKIRTLMKSRKVQKNPAYSWVQSGNKL 727



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 142/261 (54%), Gaps = 8/261 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  VH  V+  GL   V + ++LVDMYGK G V+ S +VF+ M ++N VS ++ +  +  
Sbjct: 196 GLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLN 255

Query: 65  TGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G +  V+ +FR M E       I    +L A   L    LG+EVH   I+R+   D+ +
Sbjct: 256 AGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFV 315

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++LVD+YAK G ++ A  +F ++ VRN+++WN+MI+   QNG   EA  +   M + G 
Sbjct: 316 ANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGE 375

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            P+ ++ + +L ACS M  +  G++ H  S+         I   N ++D+  + G L  A
Sbjct: 376 CPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFIS--NALIDMYAKCGQLRLA 433

Query: 240 ETLIENADCRHDSSLWEVLLG 260
           +++ + ++ + D S   ++LG
Sbjct: 434 QSIFDLSE-KDDVSYNTLILG 453



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 128/264 (48%), Gaps = 14/264 (5%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G E+HA  +  G   +V   ++LV  Y  CG   ++ RVFD+M  ++ VS ++L+  + 
Sbjct: 94  KGLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFL 153

Query: 64  QTGDF----ESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
               F    ++++ + R    +++ S   V+ AC        G  VH   ++      V 
Sbjct: 154 ANKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVN 213

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +ALVD+Y K G V+ + ++F  MP RN ++WNS I  F   G   + L +F  M+E G
Sbjct: 214 LGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERG 273

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGL 235
             P  ++   +L A   +G  D GR+        Y IK  +E      N +VD+  + G 
Sbjct: 274 FMPGSITLSSLLPALVELGYFDLGRE-----VHGYSIKRAMELDIFVANSLVDMYAKFGS 328

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           LE+A  + E  + R+  S W  ++
Sbjct: 329 LEKACAVFEKIEVRNVVS-WNAMI 351



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
           G E+H   +R     DV   + LV  YA CG    A ++F +MP R++++WNS++S F  
Sbjct: 95  GLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLA 154

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA--SMTKEYRIKPK 219
           N   ++A +    M   G   +  S + V+ AC   G+   G        +  +  +   
Sbjct: 155 NKMFDDARQALLSMMRSGVPVNVASLVSVVPAC---GVEQEGGFGLGVHGLVLKTGLDSI 211

Query: 220 IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +   N +VD+ G+ G +E +  + E    R++ S W   +G
Sbjct: 212 VNLGNALVDMYGKFGHVEASMKVFEGMPERNEVS-WNSAIG 251


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 201/336 (59%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG++VHA  I   L  +  V++ L+DMY K  L+ ++ +VFD M ++N +S +A+++G
Sbjct: 369 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 428

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y         + +F EM    ++ + F+F  ++ A + LA+LR G++ H Q ++      
Sbjct: 429 YSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFC 488

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +ALVD+YAKCG ++ A ++F     R+++ WNSMIS  AQ+G  EEAL +F +M +
Sbjct: 489 PFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMK 548

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P++V+F+ VLSACSH G ++ G  HF SM   + IKP  EHY C+V LLGR+G L 
Sbjct: 549 EGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLF 607

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE       + +W  LL AC    N  + +  A+  +   P    SY+LL N++ 
Sbjct: 608 EAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFA 667

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G W D  K+R  M  S V K PG+SWIE N+K+N
Sbjct: 668 SKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVN 703



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 140/251 (55%), Gaps = 13/251 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G ++H  V+  G   +V V +SL+D Y K G ++E+  VFD++ +K +V+ + ++ G
Sbjct: 167 VEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAG 226

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G     + +F +M E     D +    VL AC+ L  L  GK++H   +RR    D
Sbjct: 227 YTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD 286

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + L+D Y KC  V    ++F QM V+N+I+W +MISG+ QN    EA+++F +M  
Sbjct: 287 VSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNR 346

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRA 233
            G KPD  +   VL++C     +++GR+  A     Y IK  +E      N ++D+  ++
Sbjct: 347 LGWKPDGFACTSVLTSCGSREALEQGRQVHA-----YTIKANLESDEFVKNGLIDMYAKS 401

Query: 234 GLLEEAETLIE 244
            LL +A+ + +
Sbjct: 402 NLLIDAKKVFD 412



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 171/329 (51%), Gaps = 15/329 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++HA V+  G   +V V + L+D Y KC  V    ++FD+M+ KN +S + ++ G
Sbjct: 268 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 327

Query: 62  YCQTG-DFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q   D+E+ +++F EM  +    D F+   VL +C    AL  G++VH   I+ +   
Sbjct: 328 YMQNSFDWEA-MKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLES 386

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  +++ L+D+YAK   +  A ++F  M  +N+I++N+MI G++   +  EAL +F +M 
Sbjct: 387 DEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR 446

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGL 235
               KP+  +F  +++A S++  +  G++    + K      P +   N +VD+  + G 
Sbjct: 447 VRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVT--NALVDMYAKCGS 504

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLD 293
           +EEA  +  N+    D   W  ++        A  A  + +++M+  ++P+ ++++V + 
Sbjct: 505 IEEARKMF-NSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPN-YVTFVAVL 562

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
           +     GR  D       M   G+K  PG
Sbjct: 563 SACSHAGRVEDGLNHFNSMPGFGIK--PG 589



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 110/205 (53%), Gaps = 5/205 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K +H ++I  GL  +  + + L+++  K   VD +  VFDKM  KN ++ S+++  Y Q 
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 66  GDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           G  E  + +F ++     E  + F    V+RAC  L  +  G ++H   +R    +DV +
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 188

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L+D Y+K G ++ A  +F Q+  +  +TW ++I+G+ + GR   +L +F  M E   
Sbjct: 189 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 248

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK 205
            PD      VLSACS +  ++ G++
Sbjct: 249 VPDRYVVSSVLSACSMLEFLEGGKQ 273


>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 589

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 125/329 (37%), Positives = 204/329 (62%), Gaps = 5/329 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G ++H ++I L L  +  + + ++ MY K  L++E+ +VF  + +K+ +S + L+   C
Sbjct: 220 RGMQLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACC 279

Query: 64  QTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              D E  +R+FR+M ++     D F+F  VL ACAGLA++R GK++H   IR    +DV
Sbjct: 280 FCKDHERALRVFRDMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDV 339

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +ALV++YAKCG +  ++ +F +   RNL++WN++I+ F  +G G  AL  F+ M   
Sbjct: 340 GVSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTV 399

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  PD V+F+G+L+AC+H GL++ G+ +F SM + Y I P IEH++C++DLLGRAG L+E
Sbjct: 400 GIHPDSVTFVGLLTACNHAGLVEEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQE 459

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE  +E     HD  +   LL AC    +  + E +A ++++L+P     YVLL N+Y +
Sbjct: 460 AEEYMEKLPFGHDPIILGSLLSACRLHGDMVIGEHLATQLLKLQPVTTSPYVLLSNLYAS 519

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
              W    +   ++KYSG+KK PG S I+
Sbjct: 520 DEMWGGVAEAWKMLKYSGLKKEPGHSLID 548



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 151/289 (52%), Gaps = 14/289 (4%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
            G  +HA  +  G+  +++V + ++++Y KCG V  + R+FD+M  +N VS SA++ GY 
Sbjct: 21  HGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRNLVSWSAIISGYD 80

Query: 64  QTGDFESVIRIFREMEEI-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV-IIE 121
           QTG     + +F +M  + + + F  V+ ACA L AL  G +VH Q ++  GC  V  + 
Sbjct: 81  QTGQPLLALNLFSQMRIVPNEYVFASVISACASLTALSQGLQVHAQSLKL-GCVSVSFVS 139

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +AL+ +Y KCG    A  +   M   N +++N++I+GF +N + E+ +  F  M + G  
Sbjct: 140 NALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQKGFA 199

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD  +F G+L  C+      RG +    M K   ++      N ++ +  +  L+EEAE 
Sbjct: 200 PDRFTFSGLLGICTSYDDFWRGMQLHCQMIK-LNLEDSAFIGNVIITMYSKFNLIEEAEK 258

Query: 242 ---LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME---LKPD 284
              LI+  D       W  L+ AC   ++   A RV + +++   +KPD
Sbjct: 259 VFGLIKEKDLIS----WNTLVTACCFCKDHERALRVFRDMLDVCFVKPD 303



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 146/288 (50%), Gaps = 14/288 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG +VHA+ + LG      V ++L+ MY KCGL  ++  V + M + N+VS +AL+ G
Sbjct: 117 LSQGLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAG 176

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + +    E  I  F+ M +     D F+F  +L  C        G ++HCQ I+ +    
Sbjct: 177 FVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDS 236

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I + ++ +Y+K   ++ A ++F  +  ++LI+WN++++        E ALR+F DM +
Sbjct: 237 AFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLD 296

Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM--TKEYRIKPKIEHYNCMVDLLGRAG 234
               KPD  +F GVL+AC+ +  I  G++    +  T++Y+    +   N +V++  + G
Sbjct: 297 VCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQ---DVGVSNALVNMYAKCG 353

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
            ++ +  +      R+  S W  ++ A   F N  +  R  +   ++K
Sbjct: 354 SIKNSYDVFRRTSDRNLVS-WNTIIAA---FGNHGLGARALEHFEKMK 397



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 72/128 (56%), Gaps = 3/128 (2%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           + G +L  CA + A   G  +H   ++     D+I+ + +++LY+KCG V FA ++F +M
Sbjct: 5   AIGSLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEM 64

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
             RNL++W+++ISG+ Q G+   AL +F  M      P+   F  V+SAC+ +  + +G 
Sbjct: 65  SDRNLVSWSAIISGYDQTGQPLLALNLFSQMR---IVPNEYVFASVISACASLTALSQGL 121

Query: 205 KHFASMTK 212
           +  A   K
Sbjct: 122 QVHAQSLK 129



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 7/150 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK++H  +I      +V V ++LV+MY KCG +  S+ VF +   +N VS + ++  
Sbjct: 320 IRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNTIIAA 379

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     +  F +M+ +    D  +F  +L AC     +  G +V+   +  +    
Sbjct: 380 FGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAGLVEEG-QVYFNSMEEAYGIF 438

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMP 145
             IE  S L+DL  + G +  A +   ++P
Sbjct: 439 PNIEHFSCLIDLLGRAGRLQEAEEYMEKLP 468


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 198/336 (58%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H  ++ LGL   V V + LVD Y KC  ++ + + F+ + + N VS SAL+ G
Sbjct: 228 LNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITG 287

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           YCQ G+FE  ++ F  +     +I+ F++  + +AC+ LA    G + H   I+ S    
Sbjct: 288 YCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAY 347

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
              ESA++ +Y++CG +D+A ++F  +   + + W ++I+G+A  G   EAL++F  M +
Sbjct: 348 QHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQD 407

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+ V+FI VL+ACSH GL+  GR++  SM+  Y +   I+HY+CMVD+  RAG L+
Sbjct: 408 CGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQ 467

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI +     D+  W+ LLG C T+RN  + E  A+ + +L P+    Y+L+ N+Y 
Sbjct: 468 EALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYA 527

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G+W +A  +R +M    ++K    SWI    K++
Sbjct: 528 SFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVH 563



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 152/289 (52%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H+  I  GL  N  V +++ +MY KCG ++ +  VF+KM +KN+V+ + ++ G
Sbjct: 127 LEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVG 186

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q       + +F +M     E+D + F IVL+ACAGL  L  G+++H   ++     +
Sbjct: 187 YTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESE 246

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + LVD Y KC  ++ A + F  +   N ++W+++I+G+ Q G  EEAL+ F+ +  
Sbjct: 247 VSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRT 306

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
                +  ++  +  ACS +   + G +  A   K   +  +    + M+ +  R G L+
Sbjct: 307 RSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQ-HGESAMITMYSRCGRLD 365

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            A  + E+ D   D+  W  ++       NA  A ++ +++ +  ++P+
Sbjct: 366 YATRVFESID-DPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPN 413



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 23  VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEID 82
           +E+S++ MY KCG + ++ +VFD+M ++N VS + ++  Y + G F+    +F  M E++
Sbjct: 47  LENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELE 106

Query: 83  LFSFGIV----LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
               G      LR+    + L +GK++H   IR     +  + +A+ ++Y KCG ++ A 
Sbjct: 107 TKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAE 166

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +F +M  +N + W  ++ G+ Q  R  +AL +F  M   G + D   F  VL AC+ + 
Sbjct: 167 LVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLE 226

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
            ++ GR+    + K   ++ ++     +VD   +   LE A    E     +D S   ++
Sbjct: 227 ELNFGRQIHGHIVK-LGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALI 285

Query: 259 LGAC 262
            G C
Sbjct: 286 TGYC 289



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 1/196 (0%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           S+  +  AC  + +L  G+  H Q  R        +E++++ +Y KCG +  A ++F +M
Sbjct: 12  SYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEM 71

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
             RNL++WN++IS +A+NG  ++   +F +M E  TKP+  ++IG L +  +   ++ G 
Sbjct: 72  RERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIG- 130

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           K   S      +         + ++  + G LE AE + E    ++  +   +++G    
Sbjct: 131 KQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQA 190

Query: 265 FRNAHVAERVAKKIME 280
            R        AK + E
Sbjct: 191 ERQMDALALFAKMVNE 206


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/332 (39%), Positives = 205/332 (61%), Gaps = 5/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G++VHA V+  G   +  VE++LV+ Y KC  +  + +VFD++  +N V+ S ++ G
Sbjct: 177 LEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISG 236

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G     + +FR+M++     D  +   V+ ACA   AL  GK VH    ++    D
Sbjct: 237 YARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETD 296

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV++YAKCGC++ A ++F  MPV++   W+SMI G A NG  E+AL  F  M E
Sbjct: 297 LELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEE 356

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP+HV+FIGVLSAC+H GL+  GR++++SM  E+ I P +E Y CMVDLL RA L+E
Sbjct: 357 AKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVE 415

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A TL+E      +  +W  LL  C   +N   +E VA++++EL+P    +Y+LL N+Y 
Sbjct: 416 DACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYA 475

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           ++ +W    ++R  MK  G+K +PG S IE +
Sbjct: 476 SMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVD 507



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 148/266 (55%), Gaps = 16/266 (6%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGL-----VDESHRVFDKMLKKNSVSSSALLQ 60
           +++HA+++T  +  + +    L  + G C L     +D + ++F ++ + N  S +++++
Sbjct: 74  RQIHARLLTHAMPISSI-SFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIR 132

Query: 61  G--YCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           G    QT   E VI +FR+M        + F+   VL+AC+ ++AL  G++VH   ++  
Sbjct: 133 GCSQSQTPSKEPVI-LFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSG 191

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
                 +E+ALV+ YAKC  +  A ++F ++  RNL+ W++MISG+A+ G   EAL +F 
Sbjct: 192 FGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFR 251

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           DM + G  PD V+ + V+SAC+  G +D G+   A + K+  I+  +E    +V++  + 
Sbjct: 252 DMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQL-IETDLELSTALVNMYAKC 310

Query: 234 GLLEEAETLIENADCRHDSSLWEVLL 259
           G +E A+ + +    + D+  W  ++
Sbjct: 311 GCIERAKEVFDAMPVK-DTKAWSSMI 335


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 206/333 (61%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA  +      +V V S+L+DMY +CG +D +  VFD++  KN VS +AL+ G+ +
Sbjct: 184 GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 243

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD E+ + +F EM+    E   F++  V  A AG+ AL  GK VH   I+        +
Sbjct: 244 KGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFV 303

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + ++D+YAK G +  A ++F ++  ++++TWNSM++ FAQ G G EA+  F++M + G 
Sbjct: 304 GNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGV 363

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             + ++F+ +L+ACSH GL+  G+++F  M KEY ++P+I+HY  +VDLLGRAGLL +A 
Sbjct: 364 HLNQITFLSILTACSHGGLVKEGKQYF-DMMKEYNLEPEIDHYVTVVDLLGRAGLLNDAL 422

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I     +  +++W  LLG+C   +NA + +  A  + EL PD     VLL N+Y + G
Sbjct: 423 VFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTG 482

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W+ A ++R +MK +GVKK P  SW+E  + ++
Sbjct: 483 QWDAAARVRKMMKATGVKKEPACSWVEIENSVH 515



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 147/269 (54%), Gaps = 8/269 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   + +HA +      G+V +++SL+ +Y KCG V ++ RVFD M  ++  S ++L+ G
Sbjct: 80  LDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAG 139

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    +  + +   M     + + F+F  +L+A    A+  +G+++H   ++     D
Sbjct: 140 YAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDD 199

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YA+CG +D A  +F Q+  +N ++WN++I+GFA+ G GE  L +F +M  
Sbjct: 200 VYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQR 259

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLL 236
            G +  H ++  V SA + +G +++G+   A M K   R+   +   N ++D+  ++G +
Sbjct: 260 NGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG--NTILDMYAKSGSM 317

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTF 265
            +A  + +  D + D   W  +L A   +
Sbjct: 318 IDARKVFDRVD-KKDVVTWNSMLTAFAQY 345



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 2/172 (1%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           ++ ACA   +L   + +H           V ++++L+ LY KCG V  A ++F  MP R+
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           + +W S+I+G+AQN   +EAL +   M  G  KP+  +F  +L A         G +   
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ-IH 188

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           ++T +Y     +   + ++D+  R G ++ A  + +  + ++  S W  L+ 
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS-WNALIA 239



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VHA +I  G   +  V ++++DMY K G + ++ +VFD++ KK+ V+ +++L  
Sbjct: 282 LEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTA 341

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G     +  F EM +    ++  +F  +L AC+    ++ GK+        +   +
Sbjct: 342 FAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPE 401

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           +     +VDL  + G ++ A     +MP++     W +++
Sbjct: 402 IDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 441


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 204/360 (56%), Gaps = 35/360 (9%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VHA ++T G+  +  + ++L+D+Y KCG +DE+ R F+++  K++ S +++L G+C+
Sbjct: 387 GRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCR 446

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRA-------------------------------- 92
           +G  +     F ++ E D+ S+  ++ A                                
Sbjct: 447 SGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISL 506

Query: 93  ---CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
              CA + AL  G  V+    +     D ++ +AL+D+Y KCGCV+ A++IF Q+  +N+
Sbjct: 507 LSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNV 566

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
             W +M++ +A  G+  EA+ ++ +M E G KPDHV+FI +L+ACSH GL+D G K+F  
Sbjct: 567 FVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNK 626

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           +   Y I P I HY CMVDLLGR G LEE    IE      D S+W  L+ AC +  N  
Sbjct: 627 LRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVE 686

Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           +AE+  K+++E+ P  + ++VLL N+Y   GRW+D  K+RT +  +GV K PG + IE N
Sbjct: 687 LAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQN 746



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 169/364 (46%), Gaps = 52/364 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G EVH +++  G   N  + ++L+ +Y KCG + E  ++F+KM  ++ +S + ++  
Sbjct: 149 VKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISC 208

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y   G +   + +F EM       +EI + S   ++  CA L  L +GK +H   +    
Sbjct: 209 YVLKGMYREALDLFDEMLVSGVLPDEITMVS---LVSTCAKLKDLEMGKRLHLYIVDNKL 265

Query: 115 CKDVIIESALVDLYAKCGCVDFAH---------------------------------QIF 141
                + + LVD+Y+KCG +D AH                                 Q+F
Sbjct: 266 WIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLF 325

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
            +M  R+L++W +M+SG+ Q G   E+L +F  M      PD V+ + VLSAC H+   D
Sbjct: 326 DKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFD 385

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            GR   A +   Y +       N ++DL  + G L+EA    E   C+  +S   +L G 
Sbjct: 386 LGRSVHAFIVT-YGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGF 444

Query: 262 CTTFRNAHVAERVAKKIMELKPDCHL-SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
           C   R+  V +  A+      P+  + S+  + N Y     +N++F+I   M+ S VK  
Sbjct: 445 C---RSGGVDK--ARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVK-- 497

Query: 321 PGKS 324
           P K+
Sbjct: 498 PDKT 501



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 158/322 (49%), Gaps = 11/322 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++   +HA +IT  L  +  + S ++        +D +H++     +  S+  + LL+ 
Sbjct: 48  IREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLEN 107

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G  + V+  +  M      +D+ +F  ++ AC     ++LG EVH + ++    ++
Sbjct: 108 KLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRN 167

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + + L+ LY+KCG +    Q+F +M  R++I+WN+MIS +   G   EAL +FD+M  
Sbjct: 168 KSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLV 227

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G  PD ++ + ++S C+ +  ++ G++ H   +  +  I+  +   NC+VD+  + G +
Sbjct: 228 SGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSL--LNCLVDMYSKCGKM 285

Query: 237 EEAETLIENAD-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           +EA  L+   D    D  LW  L+           A ++  K+ E      +S+  + + 
Sbjct: 286 DEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSL---VSWTTMMSG 342

Query: 296 YRAVGRWNDAFKIRTLMKYSGV 317
           Y   G + ++ ++   M++  V
Sbjct: 343 YVQGGYYCESLELFQQMRFENV 364


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/332 (39%), Positives = 205/332 (61%), Gaps = 5/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G++VHA V+  G   +  VE++LV+ Y KC  +  + +VFD++  +N V+ S ++ G
Sbjct: 108 LEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISG 167

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G     + +FR+M++     D  +   V+ ACA   AL  GK VH    ++    D
Sbjct: 168 YARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETD 227

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV++YAKCGC++ A ++F  MPV++   W+SMI G A NG  E+AL  F  M E
Sbjct: 228 LELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEE 287

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP+HV+FIGVLSAC+H GL+  GR++++SM  E+ I P +E Y CMVDLL RA L+E
Sbjct: 288 AKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVE 346

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A TL+E      +  +W  LL  C   +N   +E VA++++EL+P    +Y+LL N+Y 
Sbjct: 347 DACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYA 406

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           ++ +W    ++R  MK  G+K +PG S IE +
Sbjct: 407 SMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVD 438



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 148/266 (55%), Gaps = 16/266 (6%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGL-----VDESHRVFDKMLKKNSVSSSALLQ 60
           +++HA+++T  +  + +    L  + G C L     +D + ++F ++ + N  S +++++
Sbjct: 5   RQIHARLLTHAMPISSI-SFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIR 63

Query: 61  G--YCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           G    QT   E VI +FR+M        + F+   VL+AC+ ++AL  G++VH   ++  
Sbjct: 64  GCSQSQTPSKEPVI-LFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSG 122

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
                 +E+ALV+ YAKC  +  A ++F ++  RNL+ W++MISG+A+ G   EAL +F 
Sbjct: 123 FGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFR 182

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           DM + G  PD V+ + V+SAC+  G +D G+   A + K+  I+  +E    +V++  + 
Sbjct: 183 DMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQL-IETDLELSTALVNMYAKC 241

Query: 234 GLLEEAETLIENADCRHDSSLWEVLL 259
           G +E A+ + +    + D+  W  ++
Sbjct: 242 GCIERAKEVFDAMPVK-DTKAWSSMI 266


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 203/369 (55%), Gaps = 42/369 (11%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G ++H  V+  G   +  V +SLV +YGKCG +D + +VFD + +KN  + +A++ GY
Sbjct: 125 KLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGY 184

Query: 63  CQTGDFESVIRIFREM-----------------------------EEIDLF--------- 84
              G     I +FR                               E +DLF         
Sbjct: 185 IGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFR 244

Query: 85  ----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
               +   VL ACA L AL LG        R     + ++ +AL+D+YAKCG +D A ++
Sbjct: 245 PDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEV 304

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F  M  ++++ WN+ ISG A +G  + A  +F  M + G +PD  +F+G+L AC+H GL+
Sbjct: 305 FRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLV 364

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           D GR++F SM + + + P+IEHY CMVDLLGRAG L+EA  L+++     ++ +W  LLG
Sbjct: 365 DEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLG 424

Query: 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
            C   R+  + E V K+++ L+P    +YVLL N+Y A  +W DA KIR++M   G+KK+
Sbjct: 425 GCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKV 484

Query: 321 PGKSWIEAN 329
           PG SWIE +
Sbjct: 485 PGYSWIEVD 493



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 133/282 (47%), Gaps = 47/282 (16%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK  K VHA ++ LGL  +  + + ++      G  + SHR+F +  + N    + ++ G
Sbjct: 23  LKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHG 82

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
                 F+  I I+  M +     D F+F  +L+ACA L   +LG ++H   + ++GC+ 
Sbjct: 83  LVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLH-GLVVKAGCES 141

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRN---------------------------- 148
           D  + ++LV LY KCG +D A ++F  +P +N                            
Sbjct: 142 DAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRAC 201

Query: 149 ----------LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
                     +++W+SMI G+A NG  +EAL +F  M   G +PD  + +GVL AC+ +G
Sbjct: 202 SVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLG 261

Query: 199 LIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            ++ G      M + E+   P +     ++D+  + G ++ A
Sbjct: 262 ALELGNWASNLMDRNEFLGNPVLG--TALIDMYAKCGRMDSA 301



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 55/110 (50%)

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           I +R   G  +L+  K VH   +R    +D  + + ++      G  +++H+IF Q    
Sbjct: 12  IKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEP 71

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
           N+  +N+MI G   N   +E++ I+  M + G  PD  +F  +L AC+ +
Sbjct: 72  NIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARL 121


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 204/335 (60%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+++H+ +   G   N+ + + L+D+Y KCG V+ +  +F  + KK+ +S + L+ G
Sbjct: 213 IELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGG 272

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR-SGCK 116
           +     ++  + +F+EM    E  +  +   VL ACA L A+ +G+ +H    +R  G  
Sbjct: 273 HTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVT 332

Query: 117 DVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +   + ++L+D+YAKCG ++ A Q+F  M  R+L +WN+MI GFA +G+   A  +F  M
Sbjct: 333 NASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKM 392

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G  PD ++F+G+LSACSH G++D GR  F SM+++Y+I PK+EHY CM+DLLG  GL
Sbjct: 393 RKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGL 452

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            +EA+ +I       D  +W  LL AC    N  + E  A+ +++++P+   SYVLL N+
Sbjct: 453 FKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNI 512

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           Y   GRW+   KIRTL+   G+KK PG S IE +S
Sbjct: 513 YATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDS 547



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 155/321 (48%), Gaps = 39/321 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++H  V+ LG   ++ V +SL+ MY + G ++++H+VFD+   ++ VS +AL+ G
Sbjct: 81  LIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITG 140

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFG---------------------------------- 87
           Y   G   +  ++F E+   D+ S+                                   
Sbjct: 141 YASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTM 200

Query: 88  -IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             V+ ACA   ++ LG+++H          ++ I + L+DLY+KCG V+ A  +F  +  
Sbjct: 201 VTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAK 260

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +++I+WN++I G       +EAL +F +M   G  P+ V+ + VL AC+H+G ID GR  
Sbjct: 261 KDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWI 320

Query: 207 FASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
              + K  + +         ++D+  + G +E A+ + ++   R  SS W  ++      
Sbjct: 321 HVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSS-WNAMIFGFAMH 379

Query: 266 RNAHVAERVAKKIME--LKPD 284
             A+ A  +  K+ +  + PD
Sbjct: 380 GKANAAFDLFSKMRKNGIDPD 400



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 125/256 (48%), Gaps = 37/256 (14%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAA 98
           +F+ + + N +  + + +G+    D  + ++++  M  + L    +SF  +L++CA   A
Sbjct: 21  IFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKA 80

Query: 99  LRLGKEVHCQYIR-------------------------------RSGCKDVIIESALVDL 127
           L  G+++H   ++                               RS  + V+  +AL+  
Sbjct: 81  LIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITG 140

Query: 128 YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187
           YA  G ++ A ++F ++ V+++++WN+MISG+ +    +EAL ++ DM +   KPD  + 
Sbjct: 141 YASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTM 200

Query: 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
           + V+SAC+  G I+ GR+   S  +++     I+  N ++DL  + G +E A  L +   
Sbjct: 201 VTVVSACAQSGSIELGRQ-LHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGL- 258

Query: 248 CRHDSSLWEVLLGACT 263
            + D   W  L+G  T
Sbjct: 259 AKKDVISWNTLIGGHT 274



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 3/128 (2%)

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           + +A  IF  +   NL+ WN+M  G A N     AL+++  M   G  P+  SF  +L +
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 194 CSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           C+    LI+  + H   +   Y +   +     ++ +  + G LE+A  + + +  RH  
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVN--TSLISMYAQNGRLEDAHKVFDRSSHRHVV 132

Query: 253 SLWEVLLG 260
           S   ++ G
Sbjct: 133 SYTALITG 140


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 205/333 (61%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA  +      +V V S+L+DMY +CG +D +  VFD++  KN VS +AL+ G+ +
Sbjct: 60  GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 119

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD E+ + +F EM+    E   F++  V  A AG+ AL  GK VH   I+        +
Sbjct: 120 KGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFV 179

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + ++D+YAK G +  A ++F  +  ++L+TWNSM++ FAQ G G EA+  F++M + G 
Sbjct: 180 GNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGV 239

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             + ++F+ +L+ACSH GL+  G+++F  M KE+ ++P+I+HY  +VDLLGRAGLL +A 
Sbjct: 240 HLNQITFLSILTACSHGGLVKEGKQYF-DMMKEHNLEPEIDHYVTVVDLLGRAGLLNDAL 298

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I     +  +++W  LLG+C   +NA + +  A  + EL PD     VLL N+Y + G
Sbjct: 299 VFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTG 358

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W+ A ++R +MK +GVKK P  SW+E  + ++
Sbjct: 359 QWDAAARVRKMMKATGVKKEPACSWVEIENSVH 391



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 104/183 (56%), Gaps = 4/183 (2%)

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           F+F  +L+A    A+  +G+++H   ++     DV + SAL+D+YA+CG +D A  +F Q
Sbjct: 42  FTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQ 101

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           +  +N ++WN++I+GFA+ G GE  L +F +M   G +  H ++  V SA + +G +++G
Sbjct: 102 LESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG 161

Query: 204 RKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           +   A M K   R+   +   N ++D+  ++G + +A  + ++ D + D   W  +L A 
Sbjct: 162 KWVHAHMIKSGERLSAFVG--NTILDMYAKSGSMIDARKVFDHVD-KKDLVTWNSMLTAF 218

Query: 263 TTF 265
             +
Sbjct: 219 AQY 221



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 82/160 (51%), Gaps = 5/160 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VHA +I  G   +  V ++++DMY K G + ++ +VFD + KK+ V+ +++L  
Sbjct: 158 LEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTA 217

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G     +  F EM +    ++  +F  +L AC+    ++ GK+        +   +
Sbjct: 218 FAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPE 277

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           +     +VDL  + G ++ A     +MP++     W +++
Sbjct: 278 IDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 317


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 203/335 (60%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G++VH+ +   G   N+ + ++L+D Y KCG ++ +  +F  +  K+ +S + L+ G
Sbjct: 211 IELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGG 270

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR-SGCK 116
           Y     ++  + +F+EM    E  +  +   +L ACA L A+ +G+ +H    +R  G  
Sbjct: 271 YTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVT 330

Query: 117 DVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +   + ++L+D+Y+KCG ++ AHQ+F  M  ++L  WN+MI GFA +GR   A  IF  M
Sbjct: 331 NASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRM 390

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            +   KPD ++F+G+LSACSH G++D GR  F SMT  Y+I PK+EHY CM+DLLG +GL
Sbjct: 391 RKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGL 450

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            +EAE +I       D  +W  LL AC    N  + E+ A+ + +++P+   SYVLL N+
Sbjct: 451 FKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNI 510

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           Y   GRWN+  +IR L+   G+KK+PG S IE +S
Sbjct: 511 YATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDS 545



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 155/320 (48%), Gaps = 39/320 (12%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDK---------------- 46
           K+G ++H  V+ LG   ++ V +SL+ MY +   ++++H+VFD+                
Sbjct: 80  KEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGY 139

Query: 47  ---------------MLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSFG 87
                          +  K+ VS +A++ GY +TG+++  + +F+EM +     D  +  
Sbjct: 140 ASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMV 199

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
            V+ A A   ++ LG++VH          ++ I +AL+D Y+KCG ++ A  +FL +  +
Sbjct: 200 TVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYK 259

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           ++I+WN +I G+      +EAL +F +M   G  P+ V+ + +L AC+H+G ID GR   
Sbjct: 260 DVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIH 319

Query: 208 ASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
             + K  + +         ++D+  + G +E A  +  N+        W  ++       
Sbjct: 320 VYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVF-NSMLHKSLPAWNAMIFGFAMHG 378

Query: 267 NAHVAERVAKKIM--ELKPD 284
            A+ A  +  ++   E+KPD
Sbjct: 379 RANAAFDIFSRMRKNEIKPD 398



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 125/256 (48%), Gaps = 37/256 (14%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAA 98
           VF+ + + N +  + + +G+  + D  S ++++  M  + L    ++F  +L++CA L A
Sbjct: 19  VFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKA 78

Query: 99  LRLGKEVHCQYIR-------------------------------RSGCKDVIIESALVDL 127
            + G ++H   ++                               RS  +DV+  +ALV  
Sbjct: 79  SKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTG 138

Query: 128 YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187
           YA  G ++ A  +F ++PV+++++WN+MISG+ + G  +EAL +F +M +   +PD  + 
Sbjct: 139 YASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTM 198

Query: 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
           + V+SA +  G I+ GR+   S   ++     ++  N ++D   + G +E A  L     
Sbjct: 199 VTVISASARSGSIELGRQ-VHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLS 257

Query: 248 CRHDSSLWEVLLGACT 263
            + D   W +L+G  T
Sbjct: 258 YK-DVISWNILIGGYT 272



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 46/309 (14%)

Query: 16  GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
           G+     + +SL+DMY KCG ++ +H+VF+ ML K+  + +A++ G+   G   +   IF
Sbjct: 328 GVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIF 387

Query: 76  REMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL------V 125
             M +     D  +F  +L AC+    L LG+     +I RS   +  I   L      +
Sbjct: 388 SRMRKNEIKPDDITFVGLLSACSHAGMLDLGR-----HIFRSMTHNYKITPKLEHYGCMI 442

Query: 126 DLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM--TEGGTKP 182
           DL    G    A ++   M +  + + W S++     +G  E   +   ++   E     
Sbjct: 443 DLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPG 502

Query: 183 DHVSFIGVLSACSHMG--------LIDRGRKHFA--------SMTKEYRIKPKIEHYNCM 226
            +V    + +              L D+G K           S+  E+ I  K    N  
Sbjct: 503 SYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 562

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA---HVAER--VAKKIMEL 281
           +      G+LEE E L++ A    D+S  EVL      F+     H +E+  +A  ++  
Sbjct: 563 I-----YGMLEEMEVLLQEAGFVPDTS--EVLQEMEEEFKEGALRHHSEKLAIAFGLIST 615

Query: 282 KPDCHLSYV 290
           KP+  L+ V
Sbjct: 616 KPETKLTIV 624


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/375 (36%), Positives = 215/375 (57%), Gaps = 48/375 (12%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           GK+VHA+ I +G    ++ V +S++D+Y KCG +  + +VFD+M +++ VS + L+  Y 
Sbjct: 161 GKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYA 220

Query: 64  QTGDFESV-------------------------------IRIFREME----EIDLFSFGI 88
           + GD ES                                +  F++M+    E D  +   
Sbjct: 221 KYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAG 280

Query: 89  VLRACAGLAALRLGKEVHCQYIR----RSG---CKDVIIESALVDLYAKCGCVDFAHQIF 141
           V+ ACA L A++     H  +IR    RSG     +V++ SAL+D+Y+KCG  D A+++F
Sbjct: 281 VISACAQLGAVK-----HANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVF 335

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
             M  RN+ +++SMI G+A +GR   AL++F DM +   +P+ V+FIG+LSACSH GL++
Sbjct: 336 EVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +GR+ FA M K + + P  +HY CMVDLLGRAG LEEA  L++      +  +W  LLGA
Sbjct: 396 QGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGA 455

Query: 262 CTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMP 321
           C    N  +A+  A ++ +L+P+   +Y+LL N+Y + GRW +  K+R +++  G KK P
Sbjct: 456 CRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNP 515

Query: 322 GKSWIEANSKLNHDL 336
           G SW E  +   HD 
Sbjct: 516 GCSWFEGKNGEIHDF 530



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 147/325 (45%), Gaps = 44/325 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHR--VFDKMLKKNSVSSSALL 59
             Q K+VHA +I  GL     V + L+ M  K  +   S+   VF ++   N    +A++
Sbjct: 55  FSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMI 114

Query: 60  QGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG- 114
           +GY   G        +  M    +    F+F  + +AC     + LGK+VH Q I   G 
Sbjct: 115 RGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGF 174

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQM------------------------------ 144
             D+ + ++++DLY KCG +  A ++F +M                              
Sbjct: 175 ASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDD 234

Query: 145 -PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
            P ++++ W +M++G+AQNGR +EAL  F  M + G + D V+  GV+SAC+ +G +   
Sbjct: 235 LPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 204 RKHFASMTKEYRIKP--KIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
                 + +     P   +   + ++D+  + G  +EA  + E    R+  S   ++LG 
Sbjct: 295 -NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGY 353

Query: 262 CTTFRNAHVAERVAKKIM--ELKPD 284
               R AH A ++   ++  E++P+
Sbjct: 354 AMHGR-AHSALQLFHDMLKTEIRPN 377


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/375 (36%), Positives = 215/375 (57%), Gaps = 48/375 (12%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           GK+VHA+ I +G    ++ V +S++D+Y KCG +  + +VFD+M +++ VS + L+  Y 
Sbjct: 161 GKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYA 220

Query: 64  QTGDFESV-------------------------------IRIFREME----EIDLFSFGI 88
           + GD ES                                +  F++M+    E D  +   
Sbjct: 221 KYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAG 280

Query: 89  VLRACAGLAALRLGKEVHCQYIR----RSG---CKDVIIESALVDLYAKCGCVDFAHQIF 141
           V+ ACA L A++     H  +IR    RSG     +V++ SAL+D+Y+KCG  D A+++F
Sbjct: 281 VISACAQLGAVK-----HANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVF 335

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
             M  RN+ +++SMI G+A +GR   AL++F DM +   +P+ V+FIG+LSACSH GL++
Sbjct: 336 EVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +GR+ FA M K + + P  +HY CMVDLLGRAG LEEA  L++      +  +W  LLGA
Sbjct: 396 QGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGA 455

Query: 262 CTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMP 321
           C    N  +A+  A ++ +L+P+   +Y+LL N+Y + GRW +  K+R +++  G KK P
Sbjct: 456 CRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNP 515

Query: 322 GKSWIEANSKLNHDL 336
           G SW E  +   HD 
Sbjct: 516 GCSWFEGKNGEIHDF 530



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 148/325 (45%), Gaps = 44/325 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHR--VFDKMLKKNSVSSSALL 59
             Q K+VHA +I  GL     V + L+ M  K  +   S+   VF ++   N    +A++
Sbjct: 55  FSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMI 114

Query: 60  QGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG- 114
           +GY   G        +  M    +    F+F  + +AC     + LGK+VH Q I   G 
Sbjct: 115 RGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGF 174

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQM------------------------------ 144
             D+ + ++++DLY KCG +  A ++F +M                              
Sbjct: 175 ASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDD 234

Query: 145 -PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
            P+++++ W +M++G+AQNGR +EAL  F  M + G + D V+  GV+SAC+ +G +   
Sbjct: 235 LPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 204 RKHFASMTKEYRIKP--KIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
                 + +     P   +   + ++D+  + G  +EA  + E    R+  S   ++LG 
Sbjct: 295 -NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGY 353

Query: 262 CTTFRNAHVAERVAKKIM--ELKPD 284
               R AH A ++   ++  E++P+
Sbjct: 354 AMHGR-AHSALQLFHDMLKTEIRPN 377


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/337 (37%), Positives = 200/337 (59%), Gaps = 8/337 (2%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G+++H  V+ LGL   + V +S++ +Y KCGL+  +  VF  + +K+ +S S ++  Y
Sbjct: 343 KWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVY 402

Query: 63  CQTG------DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Q G      D+ S +R  RE  + + F+   VL  C  +A L  GK+VH   +      
Sbjct: 403 SQGGYAKEAFDYLSWMR--REGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDH 460

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + ++ SA++ +Y+KCG V  A +IF  M + ++I+W +MI+G+A++G  +EA+ +F+ ++
Sbjct: 461 EAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKIS 520

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KPD+V FIGVL+AC+H G++D G  +F  MT  YRI P  EHY C++DLL RAG L
Sbjct: 521 SVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRL 580

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE +I +     D  +W  LL AC    +       A+++++L P+   +++ L N+Y
Sbjct: 581 SEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIY 640

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A GRW +A  IR LMK  GV K  G SW+  N +LN
Sbjct: 641 AAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDQLN 677



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 154/307 (50%), Gaps = 20/307 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +H + I  G   +  V ++L  MY KCG  D   R+F+KM   + VS + L+  
Sbjct: 241 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLIST 300

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G+ E  +  F+ M +     + ++F  V+ +CA LAA + G+++H   +R      
Sbjct: 301 YVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNA 360

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++++ LY+KCG +  A  +F  +  +++I+W+++IS ++Q G  +EA      M  
Sbjct: 361 LSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRR 420

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRA 233
            G KP+  +   VLS C  M L+++G++  A +     +   I+H    ++ ++ +  + 
Sbjct: 421 EGPKPNEFALSSVLSVCGSMALLEQGKQVHAHL-----LCIGIDHEAMVHSAIISMYSKC 475

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPDCHLSYVL 291
           G ++EA  +  N    +D   W  ++        +  A  + +KI  + LKPD    YV+
Sbjct: 476 GSVQEASKIF-NGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPD----YVM 530

Query: 292 LDNVYRA 298
              V  A
Sbjct: 531 FIGVLTA 537



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 133/259 (51%), Gaps = 6/259 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H   +  GL  +V V S+L+DMY K G +++  RVF+KM+ +N VS +A++ G   
Sbjct: 143 GELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVH 202

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     +  F EM       D  +F I L+A A  + L  GK +H Q I++   +   +
Sbjct: 203 AGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFV 262

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L  +Y KCG  D+  ++F +M + ++++W ++IS + Q G  E A+  F  M +   
Sbjct: 263 INTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYV 322

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+  +F  V+S+C+++     G +    + +   +   +   N ++ L  + GLL+ A 
Sbjct: 323 SPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNA-LSVANSIITLYSKCGLLKSA- 380

Query: 241 TLIENADCRHDSSLWEVLL 259
           +L+ +   R D   W  ++
Sbjct: 381 SLVFHGITRKDIISWSTII 399



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 5/177 (2%)

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-----EEIDLFSFG 87
           K G + ++  +FDKM  ++ +S + L+ GY    D    + +F  M      + D F   
Sbjct: 69  KQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMIS 128

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           + L+ACA    +  G+ +H   ++      V + SAL+D+Y K G ++   ++F +M  R
Sbjct: 129 VALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTR 188

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           N+++W ++I+G    G   E L  F +M       D  +F   L A +   L+  G+
Sbjct: 189 NVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGK 245


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/331 (37%), Positives = 203/331 (61%), Gaps = 4/331 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++HA  +  G   +  V +SL+D YGKCG V+++ RVF++    + V  ++L+  Y Q 
Sbjct: 333 RQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQD 392

Query: 66  GDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  E  +R++ EM++     D F    +L ACA L+A   GK+VH   ++     D+   
Sbjct: 393 GQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAG 452

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++LV++YAKCG ++ A   F ++PVR +++W++MI G AQ+G G+EAL++F  M + G  
Sbjct: 453 NSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVP 512

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+H++ + VL AC+H GL+   + +F SM   + I+P  EHY CM+DLLGRAG LE A  
Sbjct: 513 PNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAME 572

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L+     + ++ +W  LLGA    +N  + E+ A+ ++ L+P+   ++VLL N+Y +VG 
Sbjct: 573 LVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGM 632

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           W+   ++R LMK   VKK PG SW+E   K+
Sbjct: 633 WDKVARVRRLMKDGKVKKEPGMSWLEVKDKV 663



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 151/297 (50%), Gaps = 10/297 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QG+++H  +I LG   +    ++LVDMY K G+++++  VFD++ K + VS +A++ G  
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                   + + REM +     ++F+    L+ACAG+A   LG+++H   I+     D  
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSF 248

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +   L+D+Y+KC  +D A  +F  MP R++I WN++ISG +QN   EEA  +F  M   G
Sbjct: 249 LGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEG 308

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
              +  +   VL + + +      R+ H  S+   +     +   N ++D  G+ G +E+
Sbjct: 309 IGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYV--VNSLIDTYGKCGHVED 366

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLD 293
           A  + E +    D  L+  L+ A         A R+  ++ +  +KPD  +   LL+
Sbjct: 367 ATRVFEESPIV-DLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLN 422



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 155/291 (53%), Gaps = 7/291 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+ +I + +  +  +   L+DMY KC  +D++  VF  M +++ ++ +A++ G+ Q
Sbjct: 231 GRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQ 290

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             + E    +F  M       +  +   VL++ A L A  + +++H   ++     D  +
Sbjct: 291 NEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYV 350

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L+D Y KCG V+ A ++F + P+ +L+ + S+++ +AQ+G+GEEALR++ +M + G 
Sbjct: 351 VNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGI 410

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD      +L+AC+ +   ++G++    + K +     I   N +V++  + G +E+A 
Sbjct: 411 KPDSFVCSSLLNACASLSAYEQGKQVHVHILK-FGFMSDIFAGNSLVNMYAKCGSIEDAS 469

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK-PDCHLSYV 290
                   R   S W  ++G          A ++ K+++++  P  H++ V
Sbjct: 470 CAFSRIPVRGIVS-WSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLV 519



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 108/212 (50%), Gaps = 4/212 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH  V+  G   +  V +SLV +Y KCG   ++  +FD +  ++ VS +AL   Y  
Sbjct: 29  GKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVH 88

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +      + +F +M       + FS   ++  C GL     G+++H   I+     D   
Sbjct: 89  SDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFS 148

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVD+YAK G ++ A  +F ++   ++++WN++I+G   +     AL +  +M + G 
Sbjct: 149 ANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGM 208

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            P+  +    L AC+ M L + GR+  +S+ K
Sbjct: 209 CPNMFTLSSALKACAGMALRELGRQLHSSLIK 240



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 2/195 (1%)

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           F+F  VL+AC     L LGK+VH   +      D  + ++LV LYAKCG    A  +F  
Sbjct: 11  FAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDA 70

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           +P R++++WN++ S +  +    EA+ +F DM   G +P+  S   +++ C+ +    +G
Sbjct: 71  IPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQG 130

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           RK    + K           N +VD+  + G+LE+A ++ +    + D   W  ++  C 
Sbjct: 131 RKIHGYLIK-LGYDSDAFSANALVDMYAKVGILEDASSVFDEI-AKPDIVSWNAIIAGCV 188

Query: 264 TFRNAHVAERVAKKI 278
                H A  + +++
Sbjct: 189 LHEYHHRALELLREM 203



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 82/160 (51%), Gaps = 6/160 (3%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +QGK+VH  ++  G   ++   +SLV+MY KCG ++++   F ++  +  VS SA++ G 
Sbjct: 431 EQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGL 490

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G  +  +++F++M ++ +     +   VL AC     +   K          G + +
Sbjct: 491 AQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPM 550

Query: 119 IIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
               A ++DL  + G ++ A ++  +MP + N + W +++
Sbjct: 551 QEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALL 590


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 204/366 (55%), Gaps = 37/366 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKC------------------------------ 34
           G +VH  V+  G+  ++ V ++L+DMY +C                              
Sbjct: 142 GMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLR 201

Query: 35  -GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
            G VD++  +FD M ++++VS +A++ GY Q G F   + +FREM+      D F+   V
Sbjct: 202 LGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSV 261

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           + ACA L AL  G+     Y+ R G K D  + +ALVD+Y+KCG +  A  +F +M +R+
Sbjct: 262 VTACAQLGALETGEWARI-YMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRD 320

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
             TW ++I G A NG GEEA+ +F  M      PD V+FIGVL+AC+H GL+D+GR  F 
Sbjct: 321 KFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFL 380

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
           SMT  Y I P + H+ C++DLLGRAG L+EA   I N   R +S++W  LL AC    N+
Sbjct: 381 SMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNS 440

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            + +  A+ ++EL  +  + Y+LL N+Y    RW D  ++R ++   G+KK PG S IE 
Sbjct: 441 EIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEM 500

Query: 329 NSKLNH 334
           N  ++ 
Sbjct: 501 NGTIHE 506



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 134/308 (43%), Gaps = 42/308 (13%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQG 61
           G  VHA V+  G+  N  V SSLV MY   G    +  + D    +     V  +AL+ G
Sbjct: 38  GDAVHAHVVKFGMELNAHVASSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISG 97

Query: 62  YCQTGDFE----SVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + ++  F     S + + R        ++  VL AC     + LG +VH   +      D
Sbjct: 98  HRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPD 157

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF------------------ 159
           + + +AL+D+YA+C  +D A ++F  M VRN ++W S+ISGF                  
Sbjct: 158 LKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPE 217

Query: 160 -------------AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
                         Q G+  EAL +F +M     + D  + + V++AC+ +G ++ G   
Sbjct: 218 RDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWA 277

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
              M++ + IK      N +VD+  + G +++A  + +    R   +   V+LG      
Sbjct: 278 RIYMSR-HGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAV--- 333

Query: 267 NAHVAERV 274
           N H  E +
Sbjct: 334 NGHGEEAI 341



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 110/243 (45%), Gaps = 13/243 (5%)

Query: 82  DLFSFGIVLRACAGLAALR--LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           D ++F  +L+A    AA R  +G  VH   ++     +  + S+LV +YA  G    A  
Sbjct: 17  DAYTFPPLLKAVTA-AAERGAVGDAVHAHVVKFGMELNAHVASSLVLMYAARGDGAVART 75

Query: 140 IFLQMPVR---NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
           +    P R     + WN++ISG  ++ +   +   F DM   G  P  V++I VLSAC  
Sbjct: 76  LLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGK 135

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
              I  G +    +     + P ++  N ++D+      ++ A  L E  + R+  S   
Sbjct: 136 DKYIWLGMQVHKCVVAS-GVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTS 194

Query: 257 VLLGACTTFRNAHVAERVAKKIMELKPDCH-LSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
           V+ G     R   V +  A+ + +  P+   +S+  + + Y   G++ +A ++   M++S
Sbjct: 195 VISG---FLRLGQVDQ--ARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFS 249

Query: 316 GVK 318
            V+
Sbjct: 250 KVR 252


>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
          Length = 496

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/318 (40%), Positives = 196/318 (61%), Gaps = 4/318 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           +VV  ++++    + GLVD +  VFD M   + VS +AL+ G+ + G  +  I  FR M 
Sbjct: 137 SVVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAML 196

Query: 79  ---EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               E D  +   V+ ACA + AL LG  VH   +R+   ++V + ++L+D+YA+CG V+
Sbjct: 197 LDGVETDYITLVAVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVN 256

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A Q+F  +  R +++WNSMI GFA NGR  +A+ +F++M   G KPD V+  GVL+ACS
Sbjct: 257 LAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTACS 316

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H GL + G +++  MT EY +  ++EHY C+VDLLGRAG L+EA  ++E    R +  + 
Sbjct: 317 HAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVL 376

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LL  C T  N  +AE++ + + EL P    +YVLL N+Y AVG+W+ A K+R+LMK  
Sbjct: 377 GALLAGCRTHGNLDMAEQMMQHLFELDPQGDANYVLLSNIYAAVGKWDGAGKVRSLMKAR 436

Query: 316 GVKKMPGKSWIEANSKLN 333
           GVKK PG S +E +  ++
Sbjct: 437 GVKKRPGHSTVEIDGDVH 454



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 84/185 (45%), Gaps = 6/185 (3%)

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVH---CQYIRRSGCKDVII 120
            +    S + +      + LF   ++L  C  LA   L   +     Q       + V+ 
Sbjct: 83  PSSPLASPLALTLHARALKLFPSHLLLSTC--LARFYLASRLPHLALQLFDSMPVRSVVT 140

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + ++    + G VD A ++F  MP  + ++W ++I GF +NGR +EA+  F  M   G 
Sbjct: 141 YNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGV 200

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           + D+++ + V+SAC+ +G +  G      +    R++  +   N ++D+  R G +  A 
Sbjct: 201 ETDYITLVAVVSACAEVGALGLG-MWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAA 259

Query: 241 TLIEN 245
            +  +
Sbjct: 260 QVFRS 264



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 24/241 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VH  V+   L  NV V +SL+DMY +CG V+ + +VF  + K+  VS ++++ G
Sbjct: 220 LGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSIRKRTVVSWNSMIVG 279

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRAC--AGLA--ALRLGKEVHCQY---- 109
           +   G     I +F EM     + D  +   VL AC  AGL    LR    +  +Y    
Sbjct: 280 FAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGVAA 339

Query: 110 -IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEE 167
            +   GC        +VDL  + G +D A  +   MP+R N +   ++++G   +G  + 
Sbjct: 340 RMEHYGC--------VVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRTHGNLDM 391

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
           A ++   + E   + D  +++ + +  + +G  D G     S+ K   +K +  H    +
Sbjct: 392 AEQMMQHLFELDPQGD-ANYVLLSNIYAAVGKWD-GAGKVRSLMKARGVKKRPGHSTVEI 449

Query: 228 D 228
           D
Sbjct: 450 D 450


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 211/362 (58%), Gaps = 38/362 (10%)

Query: 5   GKEVHAKVITLGLC-GNVVVESSLVDMYGKCG---------------------------- 35
           GK ++ K I  G+   N+++E++L+DM+  CG                            
Sbjct: 258 GKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFA 317

Query: 36  ---LVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGI 88
               +D + + FD+M +++ VS +A++ GY +   F+ V+ +FR+M+    + D F+   
Sbjct: 318 NTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVS 377

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           +L ACA L AL LG E    YI ++  K D  I +AL+D+Y KCG V+ A +IF +M  +
Sbjct: 378 ILTACAHLGALELG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKK 436

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           +  TW +MI G A NG GEEAL +F  M E    PD +++IGV+ AC+H+GL+ +G+  F
Sbjct: 437 DKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFF 496

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
           ++M  ++ IKP + HY CMVDLLGRAG L+EA  +I N   + +S +W  LLGAC   +N
Sbjct: 497 SNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKN 556

Query: 268 AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             +AE  A +I+EL+P+    YVLL N+Y A  +W +   +R +M   G+KK+PG S +E
Sbjct: 557 VQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLME 616

Query: 328 AN 329
            N
Sbjct: 617 MN 618



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 147/301 (48%), Gaps = 49/301 (16%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           LK GK +    +  G L  N+ V+   + ++  CGLV+ + ++FD       V+ + +L 
Sbjct: 151 LKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLS 210

Query: 61  GYCQTGDFESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           GY +   +E   R+F EME+       +  +  ++L AC+ L  L  GK ++ +YI+   
Sbjct: 211 GYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGI 270

Query: 115 CK-DVIIESALVDLYAKCG------------------------------C-VDFAHQIFL 142
            + ++I+E+AL+D++A CG                              C +D A + F 
Sbjct: 271 VEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFD 330

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           QMP R+ ++W +MI G+ +  R +E L +F DM     KPD  + + +L+AC+H+G ++ 
Sbjct: 331 QMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALEL 390

Query: 203 GRKHFASMTKEYRIKPKIEHY----NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           G        K Y  K KI++     N ++D+  + G +E+A+ +  N   + D   W  +
Sbjct: 391 GE-----WAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIF-NEMQKKDKFTWTAM 444

Query: 259 L 259
           +
Sbjct: 445 I 445



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 157/323 (48%), Gaps = 17/323 (5%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDM--YGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           ++H++ I  GL  N +  + ++      + G V  + +VFD++ + +    + +++GY +
Sbjct: 53  QIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSR 112

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD--V 118
               ES + +++ M     + D F+F  +L+      AL+ GK V   +    G  D  +
Sbjct: 113 INCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGK-VLLNHAVIHGFLDSNL 171

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            ++   + L++ CG V++A +IF       ++TWN ++SG+ +  R EE+ R+F +M + 
Sbjct: 172 FVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKK 231

Query: 179 --GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                P+ V+ + +LSACS +  +  G+  +    KE  ++P +   N ++D+    G +
Sbjct: 232 CECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEM 291

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD-CHLSYVLLDNV 295
           + A  + +    R   S   ++ G   T R       +A+K  +  P+  ++S+  + + 
Sbjct: 292 DAARGVFDEMKTRDVISWTSIVTGFANTCR-----IDLARKYFDQMPERDYVSWTAMIDG 346

Query: 296 YRAVGRWNDAFKIRTLMKYSGVK 318
           Y  + R+ +   +   M+ S VK
Sbjct: 347 YLRMNRFKEVLTLFRDMQMSNVK 369


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 220/344 (63%), Gaps = 10/344 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM----LKKNSVSSSA 57
           L++G+EVH++ + LG   N +V   ++++YGKCG + ++ RVF++M    + K++V  +A
Sbjct: 153 LREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTA 212

Query: 58  LLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           ++ G+ +  +    +  FR M+  ++    F+   VL AC+ L AL +G+ VH  Y+R+ 
Sbjct: 213 MIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVH-SYMRKF 271

Query: 114 GCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
             + ++ + +AL+++Y++CG +D A  +F +M  R++IT+N+MISG + NG+  +A+ +F
Sbjct: 272 EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 331

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
             M     +P +V+F+GVL+ACSH GL+D G + F SM ++YR++P+IEHY CMVDLLGR
Sbjct: 332 RVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGR 391

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
            G LEEA  LI       D  +   LL AC   +N  + E+VAK++ +       +YVLL
Sbjct: 392 VGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLL 451

Query: 293 DNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            +VY + G+W +A ++R  MK +G++K PG S IE N++++  L
Sbjct: 452 SHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFL 495



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 130/251 (51%), Gaps = 9/251 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + Q   +HA++I  G   +  +   L+    KC  +D + R+F      N    +AL+ G
Sbjct: 52  INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG 111

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +  +G++   I+++  M  E I  D +    +L+AC    ALR G+EVH + ++     +
Sbjct: 112 FVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSN 171

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMP----VRNLITWNSMISGFAQNGRGEEALRIFD 173
            ++   +++LY KCG +  A ++F +MP     ++ + W +MI GF +N     AL  F 
Sbjct: 172 RLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFR 231

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M     +P+  + + VLSACS +G ++ GR   + M K + I+  +   N ++++  R 
Sbjct: 232 GMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK-FEIELNLFVGNALINMYSRC 290

Query: 234 GLLEEAETLIE 244
           G ++EA+T+ +
Sbjct: 291 GSIDEAQTVFD 301


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 130/339 (38%), Positives = 205/339 (60%), Gaps = 11/339 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC-GLVDESHRVFDKMLKKNSVSSSALLQ 60
           L  G+ VH  V+  G   ++ V++++V MY  C G ++ + +VFD+M K +SV+ SA++ 
Sbjct: 148 LNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIG 207

Query: 61  GYCQTGDFESVIRIFREME-------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           GY + G     + +FREM+       EI + S   +L AC  L AL LGK +     R  
Sbjct: 208 GYARVGRSTEAVALFREMQMAEVCPDEITMVS---MLSACTDLGALELGKWIEAYIERHE 264

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
             K V + +AL+D++AKCG +  A ++F  M  + +++W S+I G A +GRG+EA  +F+
Sbjct: 265 IHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFE 324

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           +MT  G  PD V+FIG+LSACSH GL++RGR++F SM K+Y++ PKIEHY CMVD+  R 
Sbjct: 325 EMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRT 384

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           GL++EA   + N     +  +   L+ AC       + E++ K +M+ +P    +YVLL 
Sbjct: 385 GLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLS 444

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           N+Y     W    KIR +M+  G+KK+PG + IE ++++
Sbjct: 445 NIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEI 483



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 139/275 (50%), Gaps = 23/275 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM--------YGKCGL--VDESHRVFDKMLKKN 51
           L +  ++H  ++ LGL  N +V +    +        Y    L   +   R++D  L   
Sbjct: 42  LPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFL--- 98

Query: 52  SVSSSALLQGYCQTG-DFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVH 106
               + L++ Y QTG   +  + ++  M       + F++  VL+ACAGL  L LG+ VH
Sbjct: 99  ---FNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVH 155

Query: 107 CQYIRRSGCKDVIIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
              ++     D+ +++ +V +Y+ C G ++ A ++F +MP  + +TW++MI G+A+ GR 
Sbjct: 156 GSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRS 215

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225
            EA+ +F +M      PD ++ + +LSAC+ +G ++ G K   +  + + I   +E  N 
Sbjct: 216 TEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG-KWIEAYIERHEIHKPVEVSNA 274

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           ++D+  + G + +A  L    + +   S   V++G
Sbjct: 275 LIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVG 309


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 200/335 (59%), Gaps = 4/335 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
            +G ++H     +G   +V V S+LVD+Y KC  +  S +VF ++ +K+ VS +AL+ GY
Sbjct: 435 PEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGY 494

Query: 63  CQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q    +  ++ FR+M  EEI  +  +   +L  CA L+ + L KEVH   IR+     V
Sbjct: 495 AQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTV 554

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ ++L+  YAKCG ++ +   F +MP RN ++WNS+I G   + R +E + +FD M   
Sbjct: 555 LVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVAS 614

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KPDHV+F  +LSACSH G +D G K+F SM +++ +KP++E Y CMVDLLGRAG L +
Sbjct: 615 GIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQ 674

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A  LI    C  D  +W  LLG+C    +  +AE VA  I +L P      VLL N+Y  
Sbjct: 675 AYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRVLLANLYEN 734

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +G+  +  K+R+ +K  G+KK PG SWIE ++  +
Sbjct: 735 LGKGREGSKVRSEIKDMGLKKKPGCSWIEVDNNFH 769



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 159/308 (51%), Gaps = 7/308 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H  +   GL  N+ VE++L+DMY KCG +    ++F +    N +  SA++    Q
Sbjct: 336 GKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQ 395

Query: 65  TGDFESVIRIFREMEEID-LFSFGI---VLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +G     + +F E +  D L   GI   VLRAC+ L     G ++H    +     DV +
Sbjct: 396 SGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFV 455

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVDLYAKC  + ++ ++FL++  ++L++WN++ISG+AQ+   +EAL+ F DM     
Sbjct: 456 GSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEI 515

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +P+ V+   +LS C+H+ ++   ++    + ++  +   +   N ++    + G +  + 
Sbjct: 516 RPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQ-GLGSTVLVSNSLIATYAKCGDINSSL 574

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSYVLLDNVYRAV 299
              E    R+D S   ++LG     R   +     K +   +KPD H+++  + +     
Sbjct: 575 YTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPD-HVTFTAILSACSHA 633

Query: 300 GRWNDAFK 307
           GR ++  K
Sbjct: 634 GRVDEGCK 641



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 141/273 (51%), Gaps = 20/273 (7%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G+++H  V+ LG+  +V V +SL+ MY KCG+V+++ ++F+KM + + VS + ++ G+ 
Sbjct: 127 KGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQ 186

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIV---------LRACAGLAALRLGKEVHCQYIRRSG 114
           ++ D+   +  FR M    ++ FGI          + +C+ L +L  G+E+H   ++   
Sbjct: 187 KSMDYTRSLMFFRSM----VWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGL 242

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQM-----PVRNLITWNSMISGFAQNGRGEEAL 169
             +  + S+L+++Y KCG +  A  IF  +       RN + WN MISG+  NG   +AL
Sbjct: 243 DVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQAL 302

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            +F  M   G KPD+ + + + S CS    I  G K    +  ++ +K  I     ++D+
Sbjct: 303 LLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFG-KQIHGLIFKFGLKNNIRVETALLDM 361

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
             + G +     +   +   H+  +W  ++  C
Sbjct: 362 YLKCGDMGTGLKIFRRSQ-NHNLIMWSAVISNC 393



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 112/221 (50%), Gaps = 11/221 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSA---- 57
           L  G+E+H  V+  GL     + SSL++MY KCG +  +  +F+ +L K+SV  +A    
Sbjct: 227 LTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWN 286

Query: 58  -LLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
            ++ GY   G F   + +F +M     + D  +   +   C+    +  GK++H   I +
Sbjct: 287 VMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIH-GLIFK 345

Query: 113 SGCKDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
            G K+ I +E+AL+D+Y KCG +    +IF +    NLI W+++IS  AQ+G   +AL +
Sbjct: 346 FGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALEL 405

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           F +        D    + VL ACS + L   G +     TK
Sbjct: 406 FYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATK 446



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 115/223 (51%), Gaps = 23/223 (10%)

Query: 55  SSALLQGYCQTGDFESVIRIFREMEE----IDLFS-FGIVLRACAGLAALRLGKEVHCQY 109
           ++ +++ Y + G F+  I ++ +M +    ++ F  F  +++A  GL  +  G+++H   
Sbjct: 76  ANNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHV 135

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           ++     DV + ++L+ +Y KCG V+ A Q+F +MP  +L++WN+MISGF ++     +L
Sbjct: 136 LKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSL 195

Query: 170 RIFDDMT-EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK------EYRIKPKIEH 222
             F  M  E G  P+ V+ +  + +CS +  +  GR+    + K      EY +   IE 
Sbjct: 196 MFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEM 255

Query: 223 YNCMVDLLGRAGLLEEAE----TLIENADCRHDSSLWEVLLGA 261
           Y        + G ++ AE    ++++    R ++ +W V++  
Sbjct: 256 YM-------KCGSIKNAENIFNSILDKDSVRRNAVIWNVMISG 291


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 130/337 (38%), Positives = 203/337 (60%), Gaps = 6/337 (1%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L++GK +H  ++  G   ++ V+++LVDMY KCG ++ +  VFDKM  ++ VS ++++ G
Sbjct: 834  LQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISG 893

Query: 62   YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            Y   G     +  F  M    +     S   VL AC  L ALR G+  H   I+     D
Sbjct: 894  YAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFD 953

Query: 118  VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            +++ +A++D+Y+KCG +D A  +F +   ++L+ W++MI+ +  +G G +A+ +FD M +
Sbjct: 954  ILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVK 1013

Query: 178  GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
             G +P HV+F  VLSACSH GL++ G+ +F  MT+E+ I  K+ +Y CMVDLLGRAG L 
Sbjct: 1014 AGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLS 1073

Query: 238  EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY-VLLDNVY 296
            EA  LIEN     D+S+W  LLGAC    N  +AE++A  +  L P  H  Y VLL N+Y
Sbjct: 1074 EAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDP-VHAGYHVLLSNIY 1132

Query: 297  RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             A  RWN+  K+R +M   G  K+ G S +E +++++
Sbjct: 1133 AAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVH 1169



 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 191/331 (57%), Gaps = 5/331 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++H   +  G   +  V ++L+DMY KC   DE+  +F ++ KK+ VS  ALL G
Sbjct: 323 LEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSG 382

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +FR M     + D  +   +L A + L   +    +H   +R     +
Sbjct: 383 YAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSN 442

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + ++L++LY+KCG +  A ++F  M VR+++ W+SMI+ +  +GRG EAL IFD M +
Sbjct: 443 VFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVK 502

Query: 178 GGT-KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             T +P++V+F+ +LSACSH GL++ G K F  M  +Y+++P  EH+  MVDLLGR G L
Sbjct: 503 NSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQL 562

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            +A  +I          +W  LLGAC    N  + E  AK +  L P     Y+LL N+Y
Sbjct: 563 GKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIY 622

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
              G+W++  ++RT +K  G+KKM G+S +E
Sbjct: 623 AVDGKWDNVAELRTRIKERGLKKMFGQSMVE 653



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 141/261 (54%), Gaps = 8/261 (3%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K+ HAK+   GL  +  + +    MY     +D +  VF+ +    S   + +++G+   
Sbjct: 737 KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 66  GDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-KDVII 120
           G F S + ++ +M E     D F+F   L++CAGL+ L+ GK +H Q++   GC  D+ +
Sbjct: 797 GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIH-QHLVCCGCSNDLFV 855

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           ++ALVD+YAKCG ++ A  +F +M VR+L++W SMISG+A NG   E L  FD M   G 
Sbjct: 856 DAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGV 915

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+ VS + VL AC ++G + +G + F S   +   +  I     ++D+  + G L+ A 
Sbjct: 916 IPNRVSILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLAR 974

Query: 241 TLIENADCRHDSSLWEVLLGA 261
            L +    + D   W  ++ +
Sbjct: 975 CLFDETAGK-DLVCWSAMIAS 994



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 146/273 (53%), Gaps = 11/273 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           ++ V S+LV++Y KCG + E+ +VF++  + ++V  ++++ GY Q  D E  + +F +M 
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 80  E-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
                 +D  +   V+ ACA L  ++ G  VH   IRR    D+ + ++L++LYAK GC 
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCE 257

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
             A  +F +MP +++I+W++MI+ +A N    EAL +F +M E   +P+ V+ +  L AC
Sbjct: 258 KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQAC 317

Query: 195 SHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           +    ++ G+K H  ++ K + +   +     ++D+  +    +EA  L +    + D  
Sbjct: 318 AVSRNLEEGKKIHKIAVWKGFELDFSVS--TALIDMYMKCSCPDEAVDLFQRLP-KKDVV 374

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            W  LL        A+ +  V + ++   ++PD
Sbjct: 375 SWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPD 407



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 115/206 (55%), Gaps = 4/206 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G  VH  VI     G++ + +SL+++Y K G    +  +F KM +K+ +S S ++  
Sbjct: 222 VKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIAC 281

Query: 62  YCQTGDFESVIRIFREMEE--IDLFSFGIV--LRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y         + +F EM E   +  S  +V  L+ACA    L  GK++H   + +    D
Sbjct: 282 YANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELD 341

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+D+Y KC C D A  +F ++P +++++W +++SG+AQNG   +++ +F +M  
Sbjct: 342 FSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLS 401

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRG 203
            G +PD V+ + +L+A S +G+  + 
Sbjct: 402 DGIQPDAVAVVKILAASSELGIFQQA 427



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 9/199 (4%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++H++V   G+  +    + L  +Y KC  +  + +VFD+    N    ++ L+ YC+  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 67  DFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG--CKDVI 119
            +E  +R+F  M     E  D F+  I L+ACAGL  L LGK +H  + +++     D+ 
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH-GFAKKNDEIGSDMF 140

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + SALV+LY+KCG +  A ++F +    + + W SM++G+ QN   EEAL +F  M    
Sbjct: 141 VGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMD 200

Query: 180 -TKPDHVSFIGVLSACSHM 197
               D V+ + V+SAC+ +
Sbjct: 201 CVVLDPVTLVSVVSACAQL 219



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 2/157 (1%)

Query: 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           ++H Q  +     D    + L  LYAKC  +  A ++F + P  N+  WNS +  + +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 164 RGEEALRIFDDMT-EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
           + EE LR+F  M    G  PD+ +    L AC+ + +++ G+       K   I   +  
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFV 141

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            + +V+L  + G + EA  + E    R D+ LW  ++
Sbjct: 142 GSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMV 177


>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
 gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
          Length = 576

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 205/333 (61%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK V   V + G+  + ++ S+LV MY KCG ++E+ RVFD +  K+ V+ +A++ GY Q
Sbjct: 205 GKWVEEWVRSAGMEVDSLIGSALVGMYEKCGEMEEARRVFDGISNKDVVAWNAMITGYAQ 264

Query: 65  TGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     I +F  M E  L    I    VL +CA + AL LG E+    + R    +V +
Sbjct: 265 NGMSNEAIALFHSMREAGLRPDKITLVGVLSSCAAVGALELGVELDGYALHRGLYSNVYV 324

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGG 179
            +ALVD+YAKCG ++ A  +F +MP +N  +WN++I G A NGRG +A++ F+ M  E G
Sbjct: 325 GTALVDMYAKCGDLEKATYVFGKMPFKNEASWNALICGLAFNGRGYDAIQQFELMRNEKG 384

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +PD ++FIGVLSAC H GL++ GR+ F+S+T  ++I PKIEHY+C+VDLL RAG LE A
Sbjct: 385 LQPDDITFIGVLSACVHAGLLEYGRRLFSSLTPVFKIIPKIEHYSCIVDLLARAGHLEAA 444

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
              IE    + D+ +   LL AC   +NA V E+V  +IM+L+P    +YV+   +Y   
Sbjct: 445 WDFIEKMPGKVDAVMLGALLAACRKCKNAEVGEKVINRIMKLEPTNSWNYVVSSKIYATS 504

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            + +++ ++  LM+  GV K PG SW+E + K+
Sbjct: 505 DKMDESARMIGLMRERGVNKTPGCSWVEVHGKV 537



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 12/153 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G E+    +  GL  NV V ++LVDMY KCG ++++  VF KM  KN  S +AL+ G
Sbjct: 303 LELGVELDGYALHRGLYSNVYVGTALVDMYAKCGDLEKATYVFGKMPFKNEASWNALICG 362

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
               G     I+ F  M      + D  +F  VL AC     L  G+ +   +   +   
Sbjct: 363 LAFNGRGYDAIQQFELMRNEKGLQPDDITFIGVLSACVHAGLLEYGRRL---FSSLTPVF 419

Query: 117 DVIIE----SALVDLYAKCGCVDFAHQIFLQMP 145
            +I +    S +VDL A+ G ++ A     +MP
Sbjct: 420 KIIPKIEHYSCIVDLLARAGHLEAAWDFIEKMP 452


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/316 (37%), Positives = 203/316 (64%), Gaps = 5/316 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N    +++V  Y +CG +D++  +FD+M +++ +S +A++ GY Q+G  E  + +F +M+
Sbjct: 338 NTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMK 397

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                ++  +    L +CA +AAL LGK++H + ++       I  +AL+ +Y KCG ++
Sbjct: 398 RDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIE 457

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A  +F  +  +++++WN+MI+G+A++G G+EAL +F+ M +   KPD V+ +GVLSACS
Sbjct: 458 EAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACS 516

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H GL+D+G ++F SM + Y I    +HY CM+DLLGRAG L+EA  L+++     D++ W
Sbjct: 517 HTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATW 576

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGA     +  + E+ A+K+ E++PD    YVLL N+Y A GRW +  ++R+ M+  
Sbjct: 577 GALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDK 636

Query: 316 GVKKMPGKSWIEANSK 331
           GVKK+PG SW+E  +K
Sbjct: 637 GVKKVPGYSWVEIQNK 652



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 120/240 (50%), Gaps = 14/240 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  + + G V+E+ ++FD+ML KN +S + LL  Y Q G  E   R+F    
Sbjct: 152 DVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKM 211

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           + ++ S+  ++        L   + +      R   +D I  + ++  YA+ G +  A +
Sbjct: 212 DWEIVSWNCLMGGYVRKKRLDDARSL----FDRMPVRDKISWNIMITGYAQNGLLSEARR 267

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F ++P+R++  W +M+SGF QNG  +EA RIF++M E     + VS+  +++       
Sbjct: 268 LFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYVQSQQ 323

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           I++ R+ F  M            +N MV    + G +++A+ L +    R D   W  ++
Sbjct: 324 IEKARELFDQMPSR-----NTSSWNTMVTGYAQCGNIDQAKILFDEMPQR-DCISWAAMI 377



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 18/265 (6%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           ++V  +  +  Y + G  + +  VF+ M ++++V+ +A++ GY     F+   ++F +M 
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP 118

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           + DL S+ ++L        L   + +  Q       KDV+  +A++  +A+ G V+ A +
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPE----KDVVSWNAMLSGFAQNGFVEEARK 174

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           IF QM V+N I+WN ++S + QNGR E+A R+FD   +     + VS+  ++        
Sbjct: 175 IFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDW----EIVSWNCLMGGYVRKKR 230

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +D  R  F  M     ++ KI  +N M+    + GLL EA  L E    R D   W  ++
Sbjct: 231 LDDARSLFDRMP----VRDKIS-WNIMITGYAQNGLLSEARRLFEELPIR-DVFAWTAMV 284

Query: 260 GACTTFRNAHVAERVAKKIMELKPD 284
                 +N  + E  A +I E  P+
Sbjct: 285 SGFV--QNGMLDE--ATRIFEEMPE 305



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 142/335 (42%), Gaps = 65/335 (19%)

Query: 11  KVITLGLCGNVVVESSLVDMYGKCGLVDESHR---------------------------- 42
           K+    L  N +  + L+  Y + G ++++ R                            
Sbjct: 174 KIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDD 233

Query: 43  ---VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACA--GL- 96
              +FD+M  ++ +S + ++ GY Q G      R+F E+   D+F++  ++      G+ 
Sbjct: 234 ARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGML 293

Query: 97  -AALRLGKE----------------VHCQYIRRS-------GCKDVIIESALVDLYAKCG 132
             A R+ +E                V  Q I ++         ++    + +V  YA+CG
Sbjct: 294 DEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCG 353

Query: 133 CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
            +D A  +F +MP R+ I+W +MISG+AQ+G+ EEAL +F  M   G   +  +    LS
Sbjct: 354 NIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALS 413

Query: 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           +C+ +  ++ G++    + K       I   N ++ + G+ G +EEA  + E+     D 
Sbjct: 414 SCAEIAALELGKQLHGRLVKAGFQTGYIAG-NALLAMYGKCGSIEEAFDVFEDI-TEKDI 471

Query: 253 SLWEVLLGACTTFRNAHVAERVA---KKIMELKPD 284
             W  ++      R+    E +A      M +KPD
Sbjct: 472 VSWNTMIAGYA--RHGFGKEALALFESMKMTIKPD 504



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 95/196 (48%), Gaps = 7/196 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H +++  G     +  ++L+ MYGKCG ++E+  VF+ + +K+ VS + ++ G
Sbjct: 421 LELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAG 480

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKD 117
           Y + G  +  + +F  M+   + D  +   VL AC+    +  G E      +  G   +
Sbjct: 481 YARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITAN 540

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDDMT 176
               + ++DL  + G +D A  +   MP   +  TW +++     +G  E   +  + + 
Sbjct: 541 AKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVF 600

Query: 177 EGGTKPDHVSFIGVLS 192
           E   +PD+     +LS
Sbjct: 601 E--MEPDNSGMYVLLS 614


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 139/346 (40%), Positives = 212/346 (61%), Gaps = 18/346 (5%)

Query: 2   LKQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L+ G   H +   +GL   + VV  +LV++YGKCG VD++ RV D M  + SVS +A++ 
Sbjct: 250 LRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIA 309

Query: 61  GYCQTGDFESVIRIFR-------EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
            Y Q G+    I +F+       E  +I L S   V+ +CA L  L LGK +H + IR S
Sbjct: 310 AYAQNGNAAEAINLFQCMDLEGAEPSDITLIS---VVDSCAVLGTLSLGKRIHAR-IRSS 365

Query: 114 GC--KDVIIESALVDLYAKCGCVDFAHQIFLQMPVR--NLITWNSMISGFAQNGRGEEAL 169
               + +++ +A++ +Y KCG ++ A ++F  +P+R  +++TW +MI  +AQNG GEEA+
Sbjct: 366 PSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAI 425

Query: 170 RIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
            +F +M  +GGT+P+ V+F+ VL ACSH+G +++  +HF SM  ++ + P  +HY C+VD
Sbjct: 426 ELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVD 485

Query: 229 LLGRAGLLEEAET-LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287
           LLGRAG L EAE  L+ + D   D   W   L AC    +   ++R AK++ EL+P+   
Sbjct: 486 LLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVA 545

Query: 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             VLL NVY A GR  D  +IR  MK SGVKK  G+SWIE N++++
Sbjct: 546 GRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVH 591



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 135/267 (50%), Gaps = 8/267 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++++  + +  L  +  VESSL+ MYG+C  ++E+ R FD+  +K+ V  +A++  
Sbjct: 149 LALGRKLNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISA 208

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-- 115
           Y         + + R M+    ++ L ++  +L ACA    LR G   H Q     G   
Sbjct: 209 YAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFH-QRAAAIGLDR 267

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
              ++   LV+LY KCG VD A ++   MPVR  ++W +MI+ +AQNG   EA+ +F  M
Sbjct: 268 SSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCM 327

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G +P  ++ I V+ +C+ +G +  G++  A +         +   N ++ + G+ G 
Sbjct: 328 DLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGN 387

Query: 236 LEEAETLIENADCRHDSSL-WEVLLGA 261
           LE A  + E    R  S + W  ++ A
Sbjct: 388 LELAREVFECVPLRTRSVVTWTAMIRA 414



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 123/277 (44%), Gaps = 7/277 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L + +++HA++    L  N  + + LVD Y K G +  +   F ++   N+ S + L+  
Sbjct: 48  LDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAA 107

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G       +F  M       +  +    L AC     L LG++++      +   D
Sbjct: 108 YAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALEID 167

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +ES+L+ +Y +C  ++ A + F + P ++++ W +MIS +A N R   AL +   M  
Sbjct: 168 SHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDL 227

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K    +++ +L AC+    +  G             +        +V+L G+ G ++
Sbjct: 228 EGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVD 287

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
           +A  +++    R   S W  ++ A    +N + AE +
Sbjct: 288 DARRVLDAMPVRTSVS-WTAMIAAYA--QNGNAAEAI 321



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 8/202 (3%)

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
           + +  +  +L  C GL  +R   ++H Q   R   ++  + + LVD Y+K G +  A   
Sbjct: 33  VSINDYASLLWQCRGLDEVR---KLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLA 89

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F ++ + N  +WN +++ +AQNG    A  +F  M   G +P+ V+    L AC+    +
Sbjct: 90  FGRITLHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNL 149

Query: 201 DRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             GRK    +  E   I   +E  + ++ + GR   +EEAE   + +    D   W  ++
Sbjct: 150 ALGRKLNELIASEALEIDSHVE--SSLITMYGRCREIEEAERAFDRSP-EKDVVCWTAMI 206

Query: 260 GA-CTTFRNAHVAERVAKKIME 280
            A    +R +   E V +  +E
Sbjct: 207 SAYAHNWRTSRALELVRRMDLE 228


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/334 (41%), Positives = 193/334 (57%), Gaps = 6/334 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           + GK VH          N++V ++L+DMY KC  +D + RVFD +L ++ VS + ++ G 
Sbjct: 233 RAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGL 292

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-D 117
            Q       + +F  M+    + D      VL ACA L AL  G+ VH +YI R G + D
Sbjct: 293 VQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVH-EYIERKGIEWD 351

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +++VD+Y KCGC+D A  IF +MP++N+ +WN++I+GFA +GRG EAL  FD M  
Sbjct: 352 VHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVA 411

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+ V+FI VL AC H GL+  GR+ F  MTK Y++ P  +HY CMVDLLGRAGL++
Sbjct: 412 SGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQ 471

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  +I+    R     W  LL AC        ++++   I EL+   +  YVLL N+Y 
Sbjct: 472 EAYDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYA 531

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
              RW D  K R  M   G++K PG S IE N K
Sbjct: 532 VSDRWADVGKARGFMNEKGMQKEPGSSVIEVNGK 565



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 144/266 (54%), Gaps = 17/266 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G + HA     G  G V V+++LV  YG CG   ++ +VFD+M +++ VS +ALL  
Sbjct: 134 LREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSA 193

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + + G F   + +  EM+    E+ L S   VL AC  L   R GK VH  Y RR    +
Sbjct: 194 FTRGGMFMEALGVLAEMDVTPNEVTLAS---VLVACGNLGTARAGKAVHGWYFRREKELN 250

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +I+ +AL+D+Y KC  +D A ++F  +  R++++W  MISG  Q  R  EAL +F+ M  
Sbjct: 251 LIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQI 310

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE---HY-NCMVDLLGRA 233
            G KPD V    VLSAC+ +G ++ GR        EY  +  IE   H    +VD+  + 
Sbjct: 311 SGVKPDKVVLSTVLSACASLGALESGR-----WVHEYIERKGIEWDVHVGTSVVDMYVKC 365

Query: 234 GLLEEAETLIENADCRHDSSLWEVLL 259
           G L+ A ++ +    ++ SS W  L+
Sbjct: 366 GCLDTAVSIFQEMPLKNVSS-WNALI 390



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ VH  +   G+  +V V +S+VDMY KCG +D +  +F +M  KN  S +AL+ G
Sbjct: 333 LESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALING 392

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGK---EVHCQYIRRSG 114
           +   G     +  F  M    L     +F  VL AC     ++ G+   E+  +  + S 
Sbjct: 393 FALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSP 452

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFD 173
            +D      +VDL  + G +  A+ +   MP+R  + TW +++S    +GR + + +I  
Sbjct: 453 WEDHY--GCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILM 510

Query: 174 DMTE 177
            + E
Sbjct: 511 HIHE 514


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 206/335 (61%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G++VH+ +   G   N+ + ++L+D+Y KCG V+ +  +F+ +  K+ +S + L+ G
Sbjct: 251 IELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGG 310

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR-SGCK 116
           Y     ++  + +F+EM    E  +  +   +L ACA L A+ +G+ +H    +R  G  
Sbjct: 311 YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVA 370

Query: 117 DVIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +     ++L+D+YAKCG ++ A Q+F  +  R+L +WN+MI GFA +GR   A  IF  M
Sbjct: 371 NASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 430

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            +   +PD ++F+G+LSACSH G++D GR  F SM ++Y+I PK+EHY CM+DLLG +GL
Sbjct: 431 RKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGL 490

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            +EAE +I   +   D  +W  LL AC  + N  + E  A+ +++++P    SYVLL N+
Sbjct: 491 FKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNI 550

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           Y   GRWN+  KIR L+   G+KK+PG S IE +S
Sbjct: 551 YATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDS 585



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 145/303 (47%), Gaps = 46/303 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL------VDESHRVFDKMLKKNSVSS 55
           L+  + +HA++I  GL       S L++    C L      +  +  VF+ + + N +  
Sbjct: 15  LQSLRMIHAQMIKTGLHNTNYALSKLIEF---CVLSPHFDGLPYAISVFETIQEPNLLIW 71

Query: 56  SALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIR 111
           + + +G+  + D  S + ++  M  + L    ++F  +L++CA   A R G+++H   ++
Sbjct: 72  NTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLK 131

Query: 112 -------------------------------RSGCKDVIIESALVDLYAKCGCVDFAHQI 140
                                          +S  +DV+  +AL+  YA  G +  A ++
Sbjct: 132 LGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKM 191

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F ++P++++++WN+MISG+A+ G  +EAL +F +M +   +PD  + + V+SAC+    I
Sbjct: 192 FDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASI 251

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           + GR+   S   ++     ++  N ++DL  + G +E A  L E    + D   W  L+G
Sbjct: 252 ELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISWNTLIG 309

Query: 261 ACT 263
             T
Sbjct: 310 GYT 312


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 199/336 (59%), Gaps = 8/336 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VHA  +  G   +V V  S  DMY K GL +E+ ++FD+M ++N  + +A L     
Sbjct: 127 GKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVL 186

Query: 65  TGDFESVIRIFRE-----MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            G ++  +  F E     +E  D F    VL ACAGL+ L +GK VH   ++     ++ 
Sbjct: 187 EGRYDDALTAFIEARKEGIEPTD-FMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIF 245

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + SALVD+Y KCG ++ A + F +MP RNL+TWN+MI G+A  G+ + A+ +FD+MT G 
Sbjct: 246 VGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGS 305

Query: 180 TK--PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            +  P++V+F+ VLSACS  G ++ G + F SM   Y I+P  EHY C+VDLLGRAG++E
Sbjct: 306 HRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVE 365

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A   I+    R   S+W  LLGA   F  + + +  A  + EL P    ++VLL N++ 
Sbjct: 366 QAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFA 425

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GRW +A  +R  MK  G+KK  G SWI A + ++
Sbjct: 426 AAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVH 461



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 130/261 (49%), Gaps = 7/261 (2%)

Query: 5   GKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+  HA++I TL       + + LV+MY K    + +  +      ++ V+ +AL+ G  
Sbjct: 25  GRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSV 84

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G F S +  F  M     + + F+F    +A   L +  +GK+VH   ++     DV 
Sbjct: 85  QNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVF 144

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +  +  D+Y+K G  + A ++F +MP RN+ TWN+ +S     GR ++AL  F +  + G
Sbjct: 145 VGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEG 204

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +P       VLSAC+ + +++ G K   ++  +  +   I   + +VD+ G+ G +E+A
Sbjct: 205 IEPTDFMVSSVLSACAGLSVLEVG-KSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDA 263

Query: 240 ETLIENADCRHDSSLWEVLLG 260
           E   +    R+  + W  ++G
Sbjct: 264 ERAFDEMPERNLVT-WNAMIG 283



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 97/184 (52%), Gaps = 8/184 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH   +   + GN+ V S+LVDMYGKCG ++++ R FD+M ++N V+ +A++ G
Sbjct: 225 LEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGG 284

Query: 62  YCQTGDFESVIRIFREME------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           Y   G  +  + +F EM         +  +F  VL AC+   ++ +G E+      R G 
Sbjct: 285 YAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGI 344

Query: 116 KDVIIESA-LVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISGFAQNGRGEEALRIFD 173
           +      A +VDL  + G V+ A+Q   +MP+R  ++ W +++      G+ E      D
Sbjct: 345 EPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAAD 404

Query: 174 DMTE 177
           ++ E
Sbjct: 405 NLFE 408


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 207/361 (57%), Gaps = 35/361 (9%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKC-------GLVDESHR--------------- 42
           GK+VHA+    G   +++ E++L+DMY KC        L DE H                
Sbjct: 114 GKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVR 173

Query: 43  ---------VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
                    +FD+M  +  VS +A++ GY + G +   + +FREM+    E D  S   V
Sbjct: 174 LGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISV 233

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L ACA L AL  GK +H    R    +   I +AL+++Y KCGC+D A Q+F QM  R++
Sbjct: 234 LPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDV 293

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           I+W++MI G A +G+  EA+ IF+ M +   KP+ ++F+G+LSAC+H G  + G  +F +
Sbjct: 294 ISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDT 353

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           M K++ I+P+IEHY  +VDLLGRAG L +A  ++E    + DS +W  LL +C T  N  
Sbjct: 354 MKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIE 413

Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           VA    + + EL+PD   +YVLL N+Y  +G+W+D  ++R L++   +KK PG S IE N
Sbjct: 414 VAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVN 473

Query: 330 S 330
           +
Sbjct: 474 N 474



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 166/364 (45%), Gaps = 62/364 (17%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG---- 61
           K+ HA VI   L  +  + + ++D+  +   +D +  +F +++  N+   +A+++     
Sbjct: 5   KKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHN 64

Query: 62  --YCQTGDF-ESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
             Y  T DF + ++R +R  +        D F+F  V++ACA L    LGK+VH Q+ + 
Sbjct: 65  SMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKF 124

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQ-------------------------------IF 141
                +I E+AL+D+Y KC  +  AH                                +F
Sbjct: 125 GKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALF 184

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
            +MP R +++W ++ISG+ + G   +AL +F +M   G +PD  S I VL AC+ +G ++
Sbjct: 185 DEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALE 244

Query: 202 RGR--KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            G+    F +     R   +    N ++++  + G +++A  L +    R D   W  ++
Sbjct: 245 TGKWIHMFCARNGLLR---RTCICNALIEMYTKCGCIDQACQLFDQMRGR-DVISWSTMI 300

Query: 260 GACTTFRNAHVAERVA----KKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
           G      +  V E +A     K   +KP+  +++V L +     G W +      LM + 
Sbjct: 301 GGLAN--HGKVREAIAIFERMKQTNIKPN-GITFVGLLSACAHAGFWEEG-----LMYFD 352

Query: 316 GVKK 319
            +KK
Sbjct: 353 TMKK 356



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 8/164 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H      GL     + ++L++MY KCG +D++ ++FD+M  ++ +S S ++ G
Sbjct: 243 LETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGG 302

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     I IF  M++ ++   GI    +L ACA       G  ++   +++    +
Sbjct: 303 LANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGL-MYFDTMKKDFHIE 361

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
             IE   +LVDL  + G +  A  I  +MP++ +   W S++S 
Sbjct: 362 PEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSS 405


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 198/361 (54%), Gaps = 36/361 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  +HA+ + +G   NV V  SL+DMY KC    ++  +FD + +KN V  ++L+ G
Sbjct: 395 LRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSG 454

Query: 62  YCQTGDFESVIRIFREMEEIDLFS-----------------------------------F 86
           Y   G     + +F++M   +L S                                   F
Sbjct: 455 YSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITF 514

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA L +L  GK  H + I+    + + I +AL D+YAK G +  + ++F QMP 
Sbjct: 515 SSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPE 574

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN +TW +MI G A+NG  EE++ +F+DM   G  P+  +F+ +L ACSH GL+++   +
Sbjct: 575 RNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHY 634

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F  M +   I PK +HY CMVD+L RAG L EAE L+     + +++ W  LL AC T+R
Sbjct: 635 FDKM-QALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAALLSACNTYR 693

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  +AER AK++ EL  D    YVLL N+Y + GRW DA +IR LMK + +KK  G SW+
Sbjct: 694 NEEIAERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWV 753

Query: 327 E 327
           +
Sbjct: 754 Q 754



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 37/275 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++L+D+Y + G +D + RV D M ++N VS   L+  + Q G+    ++++ +M 
Sbjct: 312 DVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQML 371

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 ++  F  VL ACA L  LR G  +H + ++     +V +  +L+D+Y KC    
Sbjct: 372 ADGCRPNISCFSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCG 431

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEE---------------------------- 167
            A  IF  +P +N++ WNS++SG++ NG+  E                            
Sbjct: 432 DAQTIFDTLPQKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQ 491

Query: 168 ---ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
              AL+ F+ M   G  P  ++F  VL AC+++  +  G+   A   K   I+  I    
Sbjct: 492 FVDALKSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIK-LGIEESIFIGT 550

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            + D+  ++G L+ ++ +      R+D + W  ++
Sbjct: 551 ALSDMYAKSGDLQSSKRMFYQMPERNDVT-WTAMI 584



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 37/233 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVE-SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +K G    A+ +  G+    VV  +++VD   K G V E+  ++++    +    +A + 
Sbjct: 160 VKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATIS 219

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAG-----LAALRLGKEVHCQYIR 111
           G+ +     + + +FR+M    +   GI    +++AC G     LA   +G  +   +  
Sbjct: 220 GFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIKSNFFE 279

Query: 112 RS---------------------------GCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
            S                             KDV+  +AL+D+Y++ G +D A ++   M
Sbjct: 280 SSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAM 339

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
           P RN ++W ++I+   Q G   EA++++  M   G +P+   F  VLSAC+ +
Sbjct: 340 PERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASL 392



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 95/262 (36%), Gaps = 39/262 (14%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSA--- 57
           RL     +HA  +  G+  +  V S L+  Y       E  R F   +  ++ S  A   
Sbjct: 95  RLPLALSLHAHAVRSGVAADRSVASHLLTTYAAFARAAERDRAFGDCVAADAASPFAYDF 154

Query: 58  LLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           ++  + + GD  S  R+F  M +                                   + 
Sbjct: 155 MVSEHVKAGDIASARRLFDGMPD-----------------------------------RT 179

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V+  + +VD   K G V  A +++ Q P  ++  + + ISGF +N     AL +F  M  
Sbjct: 180 VVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMLS 239

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +P+ ++ + ++ AC   G             K    +  IE  N ++ L  R G   
Sbjct: 240 CRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIKSNFFESSIEVQNSLITLYLRMGDAA 299

Query: 238 EAETLIENADCRHDSSLWEVLL 259
            A  + +  D + D   W  LL
Sbjct: 300 AARKVFDEMDVK-DVVSWTALL 320


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/329 (39%), Positives = 202/329 (61%), Gaps = 3/329 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G EVH+ +I  G   ++ V ++L+ +Y   G ++ +  +FD+ L ++ VS + +++G
Sbjct: 51  LEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKG 110

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-KDVII 120
           Y +    ES + +F EM+  D  +   VL ACA L A  LGK ++ QYI      ++ I+
Sbjct: 111 YAEVNQPESALCLFGEMQNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTIL 170

Query: 121 ESALVDLYAKCGCVDFAHQIFLQM--PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            +A++D+YAKCG +D A +IF ++   ++    +NSMI+G AQ+G GE A+ +F ++   
Sbjct: 171 TAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELIST 230

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KPD V+F+GVL AC H GLI+ G+K F SM   Y IKP++EHY CMVDLLGR G LEE
Sbjct: 231 GLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEE 290

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A  L++      +S +W  LL AC T  N  + E   +K++E++      YVLL N+   
Sbjct: 291 AYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILAD 350

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             +W +A ++R +M+  G++K PG S+IE
Sbjct: 351 ANQWEEARQVRKVMEDHGIRKPPGWSYIE 379



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 88/155 (56%), Gaps = 9/155 (5%)

Query: 56  SALLQGYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYI 110
           + +++GY ++ +    I ++  M        + F+F  +L +CA L++L  G EVH   I
Sbjct: 3   NTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHII 62

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
           +     D+ + +AL+ LY+  G ++ A  +F +  VR+L+++N+MI G+A+  + E AL 
Sbjct: 63  KHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALC 122

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +F +M       D V+ + VLSAC+ +G  D G++
Sbjct: 123 LFGEMQNS----DEVTLVAVLSACARLGAFDLGKR 153



 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 152 WNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           WN+MI G++++    EA+ ++  M  +G   P++ +F  +L++C+ +  ++ G +  + +
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
            K +  +  +   N ++ L    G L  A TL + +  R
Sbjct: 62  IK-HGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVR 99


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 208/340 (61%), Gaps = 5/340 (1%)

Query: 2   LKQGKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +K+GK +H   +   +   N    +SL++MY  C  + ++ R+F+++  K++VS ++++ 
Sbjct: 278 VKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMIL 337

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY + GD    +R+FR M       D  +F  VL AC  +AALR G  +H   +++    
Sbjct: 338 GYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDA 397

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + I+ +ALVD+Y+KCG +  + ++F +MP ++L++W++M++G+  +GRG EA+ I D M 
Sbjct: 398 NTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMK 457

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                PD+  F  +LSACSH GL+  G++ F  M KEY +KP + HY+CMVDLLGRAG L
Sbjct: 458 ANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHL 517

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA  +I   + +  S +W  LL A    +N  +AE  A+K+ ++ P    SY+ L N+Y
Sbjct: 518 DEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIY 577

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            A  RW+D  ++R +++  G+KK PG S+IE ++ ++  L
Sbjct: 578 AAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFL 617



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 140/269 (52%), Gaps = 15/269 (5%)

Query: 2   LKQGKEVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            KQG+++HA +I+  +   N  + + L   Y  CGL+ ++  +FD ++ KNS   + +++
Sbjct: 75  FKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIR 134

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY   G     + ++REM    +  D F++  VL+AC  L  + +G+ VH + +      
Sbjct: 135 GYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLES 194

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+ + ++L+ +YAK G +  A  +F +M  R+L +WN+MISG+A+N     A  +FD M 
Sbjct: 195 DIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMG 254

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-----NCMVDLLG 231
           + G   D  + +G+LSAC+ +  +  G+     +   Y ++  I +Y     N ++++  
Sbjct: 255 KAGLFADCTTLLGLLSACADLKAVKEGK-----VIHGYAVRNSIGNYNKFFTNSLIEMYC 309

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLG 260
               + +A  L E    +   S   ++LG
Sbjct: 310 NCNCMVDARRLFERVRWKDTVSWNSMILG 338


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 133/365 (36%), Positives = 216/365 (59%), Gaps = 37/365 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYG-------------------------------K 33
           G ++H +VI LGL  +  + ++++ MY                                K
Sbjct: 144 GAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAK 203

Query: 34  CGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIV 89
           CG VDES ++FD+M  +N+VS ++++ GY + G     + +F +M+E  +    F+   +
Sbjct: 204 CGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSL 263

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           L A A L AL+ G+ +H  YIR++  + +VI+ ++++D+Y KCG +  A Q+F   P++ 
Sbjct: 264 LNASARLGALKQGEWIH-DYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKG 322

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           L +WN+MI G A NG   EA+++F  +     +PD V+F+GVL+AC++ GL+D+ +++F+
Sbjct: 323 LSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFS 382

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            M+K Y+I+P I+HY+CMVD LGRAGLLEEAE LI N     D+ +W  LL AC    N 
Sbjct: 383 LMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNV 442

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            +A+R AK I++L  +    YVLL N+Y A  ++ +A + R  MK   ++K PG S IE 
Sbjct: 443 ELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEV 502

Query: 329 NSKLN 333
           N +++
Sbjct: 503 NGEIH 507



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 116/246 (47%), Gaps = 12/246 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--GLVDESHRVFDKMLKKNSVSSSALL 59
           +K  +++HA ++  GL  + +  S ++        G ++ ++ VF ++   N  S + ++
Sbjct: 37  MKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTII 96

Query: 60  QGYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           +G+ Q+      I +F +M      +    ++  V +A A L     G ++H + I+   
Sbjct: 97  RGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGL 156

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D  I + ++ +YA CG +    + F +    +++ WNSMI G A+ G  +E+ ++FD+
Sbjct: 157 QFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDE 216

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M    T    VS+  ++S     G +      F  M +E RIKP       +++   R G
Sbjct: 217 MPLRNT----VSWNSMISGYVRNGRLREALDLFGQMQEE-RIKPSEFTMVSLLNASARLG 271

Query: 235 LLEEAE 240
            L++ E
Sbjct: 272 ALKQGE 277


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 204/331 (61%), Gaps = 4/331 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA  + +G+  ++ V  +L+DMY KCG ++++  VF++M +K +V  + ++ GY  
Sbjct: 95  GRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYAL 154

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + ++ EM +    +D F+F +++R CA LA++   K+ H   IR     D++ 
Sbjct: 155 HGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVA 214

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVD Y+K G ++ A  +F +M  +N+I+WN++I G+  +GRG EA+ +F+ M +   
Sbjct: 215 NTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERM 274

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+H++F+ VLSACSH GL +RG + F SM ++ RIKP+  HY CM++L+GR GLL+EA 
Sbjct: 275 NPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKPRAMHYACMIELMGREGLLDEAL 334

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LI  A  +  +++W  LL AC    N  + +  A+K+  ++PD   +Y++L N+Y + G
Sbjct: 335 ALIRGAPFKPTANMWAALLTACRVNENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAG 394

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
              +A  +   +K  G++  P  SWIE   +
Sbjct: 395 NLKEAADVVHTLKRKGLRMRPVCSWIEVKRR 425



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 145/266 (54%), Gaps = 7/266 (2%)

Query: 30  MYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF----REMEEIDLFS 85
           M+ KCG++ ++ R+FD+M ++N VS + ++ G    GDF    R+F     E  +   F+
Sbjct: 19  MHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMWEEFSDAGSFT 78

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           F +++RA AGL  + +G+++H   ++     D+ +  AL+D+Y+KCG ++ A  +F +MP
Sbjct: 79  FAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMP 138

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +  + WN++I+G+A +G  EEAL ++ +M + G K DH +F  ++  C+ +  ++  ++
Sbjct: 139 EKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHAKQ 198

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
             A++ + +     I     +VD   + G +E+A  + +    ++  S W  L+G     
Sbjct: 199 AHAALIR-HGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVIS-WNALIGGYGNH 256

Query: 266 -RNAHVAERVAKKIMELKPDCHLSYV 290
            R +   E   + I E     H++++
Sbjct: 257 GRGSEAVELFEQMIQERMNPNHITFL 282



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 43/248 (17%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++  K+ HA +I  G   ++V  ++LVD Y K G ++++  VFDKM  KN +S +AL+ G
Sbjct: 193 VEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGG 252

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     + +F +M +  +     +F  VL AC+       G E+     R +  K 
Sbjct: 253 YGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKP 312

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             +  A +++L  + G +D A  +    P                               
Sbjct: 313 RAMHYACMIELMGREGLLDEALALIRGAPF------------------------------ 342

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGL 235
               KP    +  +L+AC      + G+  FA+  K Y ++P K+ +Y  ++++   AG 
Sbjct: 343 ----KPTANMWAALLTACRVNENFELGK--FAA-EKLYGMEPDKLNNYIVLLNIYNSAGN 395

Query: 236 LEEAETLI 243
           L+EA  ++
Sbjct: 396 LKEAADVV 403



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + + ++ ++ KCG +  A ++F +MP RNL++WN++ISG    G   EA R+F +M 
Sbjct: 9   DQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMW 68

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E  +     +F  ++ A + + LI  GR+  A  T +  I   I     ++D+  + G +
Sbjct: 69  EEFSDAGSFTFAVMIRASAGLELISIGRQLHAC-TLKMGIGDDIFVSCALIDMYSKCGSI 127

Query: 237 EEAETLIE 244
           E+A  + E
Sbjct: 128 EDARFVFE 135


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 205/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+E+H+   + G+  ++V  +++++MYGKCG + E+  VF +M +KN +S S ++  
Sbjct: 158 LSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAA 217

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +CQ    +  +  F+ M+    E+D  ++  VL A   + AL LGK +H + +       
Sbjct: 218 FCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTS 277

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +++ + LV++Y KCG  D A  +F  M  +N+++WN+M++ + QNGR  EAL +FD M  
Sbjct: 278 IVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDL 337

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+ ++F+ +L  CSH G       HF  M +++ I P+  H+ C++D+LGR+G LE
Sbjct: 338 EGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLE 397

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE LI+      D+ LW  LL AC T ++   A R A++  + +P C  +Y++L N+Y 
Sbjct: 398 EAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYA 457

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A+ +W++A K+R  M+ +GV+K  G+SWIE + +++
Sbjct: 458 ALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVH 493



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 140/264 (53%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G+ +H  + +  L     + + LVDMYGKCG + E+ RVFD M  KN  S + L+ G
Sbjct: 57  LEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAG 116

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G     I++F  M    E  D  +    + +C    AL  G+E+H          D
Sbjct: 117 FVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSD 176

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           ++  +A++++Y KCG +  A  +F +MP +N+I+W++MI+ F QN   +EAL  F  M +
Sbjct: 177 LVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQ 236

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + D ++++ VL A + +G ++ G+     +     +   I   N +V++ G+ G  +
Sbjct: 237 EGMELDRITYVSVLDAYTSVGALELGKALHVRIVYA-GLDTSIVVGNTLVNMYGKCGSPD 295

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           +A  + ++   ++  S W  +L A
Sbjct: 296 DARDVFDSMVEKNVVS-WNAMLAA 318



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 114/233 (48%), Gaps = 9/233 (3%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           ++R CAG  AL  G+ +H      +  +   + + LVD+Y KCG +  A ++F  M  +N
Sbjct: 47  LIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKN 106

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           + +W  +++GF Q+GRG EA+++F  M + G  PD V+ +  + +C     + +GR+   
Sbjct: 107 VFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGRE-IH 165

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
           S      +   +   N ++++ G+ G + EA  +      ++  S W  ++ A      A
Sbjct: 166 SAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVIS-WSTMIAAFCQNELA 224

Query: 269 HVA----ERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
             A    + + ++ MEL     ++YV + + Y +VG       +   + Y+G+
Sbjct: 225 DEALLFFKLMQQEGMELD---RITYVSVLDAYTSVGALELGKALHVRIVYAGL 274


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/281 (45%), Positives = 178/281 (63%), Gaps = 6/281 (2%)

Query: 54  SSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQY 109
           S ++++ GY Q G  +  I +F +MEE  +     +   VL ACA L AL LG  +H +Y
Sbjct: 194 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIH-EY 252

Query: 110 IRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
             R G K +V I + L+D+Y KCGC++ A ++F +M  R +++W++MI G A +GR EEA
Sbjct: 253 SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEA 312

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           LR+F DM++ G +P+ V+FIG+L ACSHMGLI  GR+ FASMT++Y I P+IEHY CMVD
Sbjct: 313 LRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVD 372

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288
           LL RAGLL EA   I N   + +  +W  LLGAC   +N  +AE   K ++EL P     
Sbjct: 373 LLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGY 432

Query: 289 YVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           YV+L N+Y   GRW D  ++R  MK   VKK PG S I  +
Sbjct: 433 YVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVD 473



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  +H      G   NV + ++L+DMY KCG ++E+ +VF++M ++  VS SA++ G
Sbjct: 243 LDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGG 302

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  +R+F +M ++ +   G+    +L AC+ +  +  G+       R  G   
Sbjct: 303 LAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIP 362

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            I     +VDL ++ G +  AH+  L MP++ N + W +++  
Sbjct: 363 QIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGA 405


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 197/337 (58%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++HA V  LGL   V V + LVD Y KC   + + R F ++ + N VS SA++ G
Sbjct: 301 LNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISG 360

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           YCQ   FE  ++ F+ +       ++ F++  + +AC+ LA   +G +VH   I+RS   
Sbjct: 361 YCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIG 420

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
               ESAL+ +Y+KCGC+D A+++F  M   +++ W + ISG A  G   EALR+F+ M 
Sbjct: 421 SQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMV 480

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+ V+FI VL+ACSH GL+++G+    +M ++Y + P I+HY+CM+D+  R+GLL
Sbjct: 481 SCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLL 540

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA   ++N     D+  W+  L  C T +N  + E   +++ +L P+    YVL  N+Y
Sbjct: 541 DEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLY 600

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              G+W +A ++  LM    +KK    SWI+   K++
Sbjct: 601 TWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIH 637



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 152/290 (52%), Gaps = 9/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++HA VI  GLC N  +E+ +V+MY KCG +  + RVFD+M  K  V+ + L+ G
Sbjct: 200 LDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVG 259

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +++F     E  E D F F +VL+ACA L  L LGK++H    +     +
Sbjct: 260 YTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESE 319

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           V + + LVD Y KC   + A + F ++   N ++W+++ISG+ Q  + EEA++ F  + +
Sbjct: 320 VSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRS 379

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +  +  +  ++  +  ACS +   + G +  A   K   I  +    + ++ +  + G L
Sbjct: 380 KNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGE-SALITMYSKCGCL 438

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           ++A  + E+ D   D   W   +     + NA  A R+ +K++   +KP+
Sbjct: 439 DDANEVFESMD-NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPN 487



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 128/247 (51%), Gaps = 5/247 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           +V++++ ++ MY +C  ++++ ++FD+M + N+VS + ++  Y + G  +  + +F  M 
Sbjct: 117 SVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGML 176

Query: 79  ---EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
              ++     +  +L++     AL  G+++H   IR   C +  IE+ +V++Y KCG + 
Sbjct: 177 ASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLV 236

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A ++F QM V+  +    ++ G+ Q GR  +AL++F D+   G + D   F  VL AC+
Sbjct: 237 GAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACA 296

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
            +  ++ G++  A + K   ++ ++     +VD   +    E A    +     +D S  
Sbjct: 297 SLEELNLGKQIHACVAK-LGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWS 355

Query: 256 EVLLGAC 262
            ++ G C
Sbjct: 356 AIISGYC 362


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 139/373 (37%), Positives = 213/373 (57%), Gaps = 48/373 (12%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G ++HA+ + LG    ++ V ++++DMY KCG +  +  VFD+M +++ +S + L+  Y 
Sbjct: 128 GAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYT 187

Query: 64  QTGDFESV-------------------------------IRIFREME----EIDLFSFGI 88
           + GD  +                                + +FR +     EID  +   
Sbjct: 188 RIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVG 247

Query: 89  VLRACAGLAALRLGKEVHCQYIR----RSGC---KDVIIESALVDLYAKCGCVDFAHQIF 141
           V+ ACA     +LG   +  +IR     SG     +V++ SAL+D+Y+KCG V+ A+ +F
Sbjct: 248 VISACA-----QLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVF 302

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
             M  RN+ +++SMI GFA +GR   A+++F DM E G KP+HV+F+GVL+ACSH GL+D
Sbjct: 303 KGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVD 362

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +G++ FASM K Y + P  E Y CM DLL RAG LE+A  L+E      D ++W  LLGA
Sbjct: 363 QGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGA 422

Query: 262 CTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMP 321
                N  VAE  +K++ EL+PD   +Y+LL N Y + GRW+D  K+R L++   +KK P
Sbjct: 423 SHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNP 482

Query: 322 GKSWIEANSKLNH 334
           G SW+EA + + H
Sbjct: 483 GWSWVEAKNGMIH 495



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 153/336 (45%), Gaps = 54/336 (16%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSL---VDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           L Q KEVHA++    L  +  V + L   V       L      +F ++   N  + +AL
Sbjct: 21  LNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWTAL 80

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           ++ Y   G     +  +  M +  +    F+F  +  ACA +    LG ++H Q +   G
Sbjct: 81  IRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGG 140

Query: 115 -CKDVIIESALVDLYAKCGCVDFAHQIFLQM----------------------------- 144
              D+ + +A++D+Y KCG +  A  +F +M                             
Sbjct: 141 FSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFD 200

Query: 145 --PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
             PV++++TW +M++G+AQN    +AL +F  + + G + D V+ +GV+SAC+ +     
Sbjct: 201 GLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQL----- 255

Query: 203 GRKHFASMTKE------YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
           G   +A+  ++      + +   +   + ++D+  + G +EEA  + +    R+  S   
Sbjct: 256 GASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSS 315

Query: 257 VLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
           +++G     R A  A ++   ++E  +KP+ H+++V
Sbjct: 316 MIVGFAIHGR-ARAAIKLFYDMLETGVKPN-HVTFV 349


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 123/367 (33%), Positives = 209/367 (56%), Gaps = 36/367 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--------------------------- 34
           L+ G++VH+  +  G   N  V ++L+ MYGKC                           
Sbjct: 434 LETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAA 493

Query: 35  ----GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSF 86
                +++++  +FD ML ++ VS + ++  Y Q    +  +  F+ M    E+ +    
Sbjct: 494 LVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPIL 553

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            I+L  C GL + +LG+++H   I+     ++I+ +AL+ +Y KCGC D +H++F  M  
Sbjct: 554 TILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEE 612

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R++ TWN+ I+G AQ+G G EA+++++ M   G  P+ V+F+G+L+ACSH GL+D G + 
Sbjct: 613 RDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQF 672

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SM+++Y + P +EHY CMVDLLGR G ++ AE  I +     D+ +W  LLGAC   +
Sbjct: 673 FKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHK 732

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           NA +  R A+K+   +P    +YV+L N+Y ++G W +  ++R +MK  GV K PG SW+
Sbjct: 733 NAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWM 792

Query: 327 EANSKLN 333
           +  +K++
Sbjct: 793 QIRNKVH 799



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 130/247 (52%), Gaps = 15/247 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVE-SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+   A+++   +   +VV  ++++  Y + G+VDE+  +FD+M  +N++S + ++ GY 
Sbjct: 335 GRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYA 394

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLR----ACAGLAALRLGKEVHCQYIRRSGCK-DV 118
           Q G  E  + + + +    +      L     AC+ + AL  G++VH   ++ +GC+ + 
Sbjct: 395 QNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVK-AGCQFNS 453

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +AL+ +Y KC  +++  Q+F +M V++ ++WNS I+   QN   E+A  IFD+M   
Sbjct: 454 YVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNM--- 510

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL---LGRAGL 235
               D VS+  ++SA +     D   + F +M  E+  KP       ++ +   LG A L
Sbjct: 511 -LSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE-KPNSPILTILLSVCGGLGSAKL 568

Query: 236 LEEAETL 242
            ++  T+
Sbjct: 569 GQQIHTV 575



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 7/196 (3%)

Query: 12  VITLGLCGNVVVESSLVDMYGK-CGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFES 70
           V+  G   +VV+ +S++++Y +    +D + + FD M+++N  + S ++      G  ++
Sbjct: 249 VLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDA 308

Query: 71  VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE-SALVDLYA 129
            I ++       + S   +L    GLA  R G+    + +       +++  +A++  Y 
Sbjct: 309 AIAVYGRDPVKSIPSQTALL---TGLA--RCGRITEARILFEQIPDPIVVSWNAMITGYM 363

Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
           + G VD A ++F +MP RN I+W  MI+G+AQNGR EEAL +   +   G  P   S   
Sbjct: 364 QNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTS 423

Query: 190 VLSACSHMGLIDRGRK 205
              ACSH+G ++ GR+
Sbjct: 424 SFLACSHIGALETGRQ 439



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 43/188 (22%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
           GNV   + L+  Y + G V ++ RVFD M ++N+V+ +A++  Y Q GD     R+F  M
Sbjct: 93  GNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAM 152

Query: 79  EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
              D+ S+  ++               +C                +VD          A 
Sbjct: 153 PSRDVTSWNSMVTG-------------YCH------------SRQMVD----------AW 177

Query: 139 QIFLQMPVRNLITWNSMISGFA---QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            +F QMP RNL+TW  MISG+    Q+G+G +  R+   M   G  PD  +F  VLSA +
Sbjct: 178 NLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRM---MHHEGASPDQSNFASVLSAVT 234

Query: 196 HMGLIDRG 203
             GL D G
Sbjct: 235 --GLQDLG 240



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 119/284 (41%), Gaps = 45/284 (15%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  +++V  Y + G +  + R+FD M  ++  S ++++ GYC +        +F++M 
Sbjct: 125 NTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMP 184

Query: 80  EIDLFS-----------------------------------FGIVLRACAGLAALRLGKE 104
           + +L +                                   F  VL A  GL  L + + 
Sbjct: 185 QRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEV 244

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAK-CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           +    ++     DV+I ++++++Y +    +D A + F  M  RN  TW++MI+  +  G
Sbjct: 245 LRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGG 304

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
           R + A+ ++       + P   + +  L+ C        GR   A +  E    P +  +
Sbjct: 305 RIDAAIAVYGR-DPVKSIPSQTALLTGLARC--------GRITEARILFEQIPDPIVVSW 355

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
           N M+    + G+++EA+ L +    R+  S   ++ G     R+
Sbjct: 356 NAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRS 399



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SA +   A+ G +  A ++F  MP R++I WNSMIS +  +G  E+A  +FD ++ G  +
Sbjct: 37  SARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR 96

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
              +    +LS  + +G +   R+ F  M +   +      +N MV    + G +  A  
Sbjct: 97  TATI----LLSGYARLGRVLDARRVFDGMPERNTVA-----WNAMVSCYVQNGDITMARR 147

Query: 242 LIENADCRHDSSLWEVLLGAC 262
           L +    R  +S   ++ G C
Sbjct: 148 LFDAMPSRDVTSWNSMVTGYC 168



 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 13/138 (9%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           +R  A L  LR  +EV      R    D+I  ++++  Y   G ++ A  +F  +   N+
Sbjct: 40  IRELARLGRLREAREVFDAMPHR----DIIAWNSMISAYCNSGMLEDARILFDAISGGNV 95

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
            T   ++SG+A+ GR  +A R+FD M E  T    V++  ++S     G I   R+ F +
Sbjct: 96  RTATILLSGYARLGRVLDARRVFDGMPERNT----VAWNAMVSCYVQNGDITMARRLFDA 151

Query: 210 MTKEYRIKPKIEHYNCMV 227
           M         +  +N MV
Sbjct: 152 MPSR-----DVTSWNSMV 164


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 131/331 (39%), Positives = 199/331 (60%), Gaps = 7/331 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++HA  +  G   +V V S+LVDMY +CG +D +   FD M  K+ VS +AL+ G
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISG 264

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + + G+ E  + +  +M+  +     F++  VL ACA + AL  GK VH   I+ SG K 
Sbjct: 265 HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIK-SGLKL 323

Query: 118 V-IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  I + L+D+YAK G +D A ++F ++   ++++WN+M++G AQ+G G+E L  F+ M 
Sbjct: 324 IAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQML 383

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P+ +SF+ VL+ACSH GL+D G  +F  M K+Y+++P + HY   VDLLGR GLL
Sbjct: 384 RIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLL 442

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           + AE  I        +++W  LLGAC   +N  +    A++  EL P      +LL N+Y
Sbjct: 443 DRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIY 502

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            + GRW D  K+R +MK SGVKK P  SW+E
Sbjct: 503 ASAGRWRDVAKVRKMMKESGVKKQPACSWVE 533



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 148/267 (55%), Gaps = 7/267 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           +++QG+ VHA ++      N +V+++ +V+MY KCG +D++ R+FD+M  K+ V+ +AL+
Sbjct: 102 KVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALI 161

Query: 60  QGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G+ Q       + +F +M  +      F+   +L+A      L  G ++H   ++    
Sbjct: 162 AGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQ 221

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             V + SALVD+YA+CG +D A   F  MP ++ ++WN++ISG A+ G GE AL +   M
Sbjct: 222 SSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKM 281

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                +P H ++  VLSAC+ +G +++G+   A M K   +K      N ++D+  +AG 
Sbjct: 282 QRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKS-GLKLIAFIGNTLLDMYAKAGS 340

Query: 236 LEEAETLIENADCRHDSSLWEVLLGAC 262
           +++A+ + +    + D   W  +L  C
Sbjct: 341 IDDAKRVFDRL-VKPDVVSWNTMLTGC 366


>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial; Flags: Precursor
 gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 601

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 127/334 (38%), Positives = 200/334 (59%), Gaps = 5/334 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G+ VH  +   GL  NVVVE+SLVDMY K G ++ + RVF +M+ K +VS  +L+ G+
Sbjct: 234 KMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGF 293

Query: 63  CQTG----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G     FE+V+ +     + DL +   VL AC+ + +L+ G+ VHC YI +    D 
Sbjct: 294 AQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHC-YILKRHVLDR 352

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           +  +AL+D+Y+KCG +  + +IF  +  ++L+ WN+MIS +  +G G+E + +F  MTE 
Sbjct: 353 VTATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTES 412

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             +PDH +F  +LSA SH GL+++G+  F+ M  +Y+I+P  +HY C++DLL RAG +EE
Sbjct: 413 NIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEE 472

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A  +I +    +   +W  LL  C   RN  V +  A KI++L PD      L+ N +  
Sbjct: 473 ALDMINSEKLDNALPIWVALLSGCINHRNLSVGDIAANKILQLNPDSIGIQTLVSNFFAT 532

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
             +W +  K+R LM+   ++K+PG S IE N +L
Sbjct: 533 ANKWKEVAKVRKLMRNGAMEKVPGYSAIEVNGEL 566



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 152/290 (52%), Gaps = 11/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G+ V  K +  G   +V V SS++++Y KCG +DE+  +F KM K++ +  + ++ G
Sbjct: 132 LEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTG 191

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV----LRACAGLAALRLGKEVHCQYIRRSGCK- 116
           + Q G     +  +REM+        +V    L+A   L   ++G+ VH  Y+ R+G   
Sbjct: 192 FAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVH-GYLYRTGLPM 250

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V++E++LVD+YAK G ++ A ++F +M  +  ++W S+ISGFAQNG   +A     +M 
Sbjct: 251 NVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQ 310

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD V+ +GVL ACS +G +  GR     + K + +         ++D+  + G L
Sbjct: 311 SLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVLDRVTA--TALMDMYSKCGAL 368

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
             +  + E+   R D   W  ++       N      +  K+ E  ++PD
Sbjct: 369 SSSREIFEHVG-RKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPD 417



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 125/240 (52%), Gaps = 10/240 (4%)

Query: 7   EVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++HA VI+ G L     +   L+   G+ G +  + +VFD++ ++     ++++  Y + 
Sbjct: 35  QIHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKVFDELPQRGVSVYNSMIVVYSRG 94

Query: 66  GDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
            + + V+R++ +M  E+I  D  +F + ++AC     L  G+ V C+ +      DV + 
Sbjct: 95  KNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVC 154

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           S++++LY KCG +D A  +F +M  R++I W +M++GFAQ G+  +A+  + +M   G  
Sbjct: 155 SSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFG 214

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR--IKPKIEHYNCMVDLLGRAGLLEEA 239
            D V  +G+L A   +G    GR     +   YR  +   +     +VD+  + G +E A
Sbjct: 215 RDRVVMLGLLQASGDLGDTKMGRSVHGYL---YRTGLPMNVVVETSLVDMYAKVGFIEVA 271


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 198/336 (58%), Gaps = 7/336 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH  V        +VV ++LVDMY KC  + E+ ++FD++  ++ VS ++++ G
Sbjct: 219 LSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISG 278

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
             Q    +  + +F +M+    E D      VL ACA L AL  G+ V  +YI R G + 
Sbjct: 279 LVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQ-EYIERQGIEW 337

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+ I +ALVD+YAKCGC++ A  IF  +P RN+ TWN+++ G A +G G EAL+ F+ M 
Sbjct: 338 DIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMI 397

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM-TKEYRIKPKIEHYNCMVDLLGRAGL 235
             G +P+ V+F+ +L+AC H GL+  GR +F  M ++ +   P++EHY CM+DLL RAGL
Sbjct: 398 GAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGL 457

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L+EA   I N     D  +W  LL AC    N  +++ +   ++ELK      YVLL N+
Sbjct: 458 LDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNI 517

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           Y    RW+D  ++R LMK  G++K PG S IE + +
Sbjct: 518 YATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDGE 553



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 155/275 (56%), Gaps = 11/275 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G++VH   + +G   ++ V++SL+  Y  CG    + RVFD+ML ++ VS + L+ G
Sbjct: 121 VQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISG 180

Query: 62  YCQTGDFESVIRIFREMEEI-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           Y +TG F+  I +F +M+ + ++ +F  VL AC  +  L +GK VH    +R+    +++
Sbjct: 181 YVRTGLFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVV 240

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVD+Y KC C+  A ++F ++P R++++W S+ISG  Q  + +++L +F DM   G 
Sbjct: 241 GNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGV 300

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE---HY-NCMVDLLGRAGLL 236
           +PD +    VLSAC+ +G +D GR       +EY  +  IE   H    +VD+  + G +
Sbjct: 301 EPDRIILTSVLSACASLGALDYGR-----WVQEYIERQGIEWDIHIGTALVDMYAKCGCI 355

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
           E A  +      R+  + W  LLG      + H A
Sbjct: 356 EMALHIFNGIPNRNIFT-WNALLGGLAMHGHGHEA 389



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 143/301 (47%), Gaps = 20/301 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGK-CGLVDESHRVFDKM-LKKNSVSSSALL 59
           ++  K++HA +I  GL  +  V S + + +GK  G VD +    ++  L   ++  + L+
Sbjct: 18  IRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYNTLI 77

Query: 60  QGYCQT----GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
             Y  +      F    RI       D+++F +VL+AC     ++ G++VH   ++    
Sbjct: 78  AAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFL 137

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D+ ++++L+  Y+ CG    A ++F +M VR++++W  +ISG+ + G  +EA+ +F  M
Sbjct: 138 CDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKM 197

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
                 P+  +F+ VL AC  MG +  G+  H     + + I   +   N +VD+  +  
Sbjct: 198 D---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVG--NALVDMYVKCE 252

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L EA  L +    R D   W       T+  +  V  +  K  +EL  D  +S V  D 
Sbjct: 253 CLCEARKLFDELPDR-DIVSW-------TSIISGLVQCKQPKDSLELFYDMQISGVEPDR 304

Query: 295 V 295
           +
Sbjct: 305 I 305


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 213/361 (59%), Gaps = 35/361 (9%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH  V   G   N VVE+SLV+MY KC  +D++HRVF++M ++++VS + L+ G+ +
Sbjct: 136 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVR 195

Query: 65  TGDFESVIRIFREMEEIDLFSF--------------------------GI---------V 89
            G       IF EM++  +FS+                          GI         V
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L  CA L AL LGK +H    +    +++ + +AL+++YAKCG +D   ++F QM  R++
Sbjct: 256 LPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDV 315

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           I+W++MI G A +GR  EA+ +F +M +   +P  ++F+G+L+AC+H GL++ G ++F S
Sbjct: 316 ISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFES 375

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           M ++Y I+P +EHY C+V+LLG +G L++A  L++    + DS +W  LL +C +  N  
Sbjct: 376 MKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLK 435

Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           +A    + ++EL+P    +YVLL N+Y  +G+W+   ++R LM+   +KK PG S IE +
Sbjct: 436 IAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVD 495

Query: 330 S 330
           +
Sbjct: 496 N 496



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 117/239 (48%), Gaps = 40/239 (16%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++HA ++   L  +  + + +VD+    G  + ++ +F  +   N+   +A+++ Y   
Sbjct: 31  KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 90

Query: 66  GDFESVIRIFREM-------EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
             +   I ++++M         I  D F+F  V+++CAGL    LGK+VH    +     
Sbjct: 91  KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + ++E++LV++Y KC  +D AH++F +M  R+ ++WN++ISG  + G+   A  IF++M 
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ 210

Query: 177 EG-------------------------------GTKPDHVSFIGVLSACSHMGLIDRGR 204
           +                                G +PD +S + VL  C+ +G ++ G+
Sbjct: 211 DKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGK 269



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 8/183 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H      G   N+ V ++L++MY KCG +D+  R+FD+M +++ +S S ++ G
Sbjct: 265 LELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVG 324

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     I +F+EM+    E  + +F  +L ACA    L  G   + + ++R    +
Sbjct: 325 LANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLR-YFESMKRDYNIE 383

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDD 174
             +E    LV+L    G +D A ++  +MP + +   W S++S    +G  + A+   + 
Sbjct: 384 PGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEH 443

Query: 175 MTE 177
           + E
Sbjct: 444 LLE 446


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 124/336 (36%), Positives = 201/336 (59%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  +H   +  G   +V V +  + MY KCG V+ + ++FD+M  K  +S +A++ G
Sbjct: 159 LELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSG 218

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G   +V+ ++R M+      D  +   VL +CA L A  +G EV  +        +
Sbjct: 219 YAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSN 278

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+++YA+CG +  A  +F  MP R L++W ++I G+  +G GE A+++F +M  
Sbjct: 279 PFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR 338

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD  +F+ VLSACSH GL D+G ++F  M + Y+++P  EHY+CMVDLLGRAG L+
Sbjct: 339 SGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLK 398

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+TLIE+   + D ++W  LLGAC   +N  +AE   ++++EL+P+    YVLL N+Y 
Sbjct: 399 EAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYS 458

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
                    +IR +MK   +KK PG S++E   +++
Sbjct: 459 NANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVH 494



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 152/289 (52%), Gaps = 12/289 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KKNSVSSSALLQGY 62
           G + H ++  +G      V++ L+ MY K  LVD + +VF++    +K +V  +AL+ GY
Sbjct: 59  GSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGY 118

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
                    + +FR+M E    ++  +   ++ AC     L LG  +HC  ++     DV
Sbjct: 119 VSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDV 178

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +  + +Y KCG V++A ++F +MPV+ LI+WN+M+SG+AQNG     L ++ +M   
Sbjct: 179 SVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMN 238

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  PD V+ +GVLS+C+++G    G +  F      +   P +   N ++++  R G L 
Sbjct: 239 GVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLN--NALINMYARCGNLT 296

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           +A+ + +    R   S W  ++G      +  +A ++ K+++   ++PD
Sbjct: 297 KAQAVFDGMPERTLVS-WTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPD 344



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 89/175 (50%), Gaps = 5/175 (2%)

Query: 73  RIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKC 131
           ++ R  +  + F+F   L++CA L+   LG + H Q I + GC  +  +++ L+ +Y K 
Sbjct: 30  QMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQ-ITKVGCVFEPFVQTGLISMYCKG 88

Query: 132 GCVDFAHQIFLQ-MPVRNL-ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
             VD A ++F +    R L + +N+++SG+  N +  +A+ +F  M E G   + V+ +G
Sbjct: 89  SLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLG 148

Query: 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           ++ AC     ++ G     S T +Y     +   NC + +  + G +  A+ L +
Sbjct: 149 LIPACVSPINLELGSSLHCS-TLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 202


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 208/334 (62%), Gaps = 5/334 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
            G+++HA  +  G   NV V SSL+DMY +   + E+  +F+ +  KN VS +AL+ G+ 
Sbjct: 224 HGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHA 283

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           + G+ E V+R+F +M     E   F++  V  ACA   +L  GK VH   I+  G     
Sbjct: 284 RKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAY 343

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I + L+D+YAK G +  A ++F ++  +++++WNS+ISG+AQ+G G EAL++F+ M +  
Sbjct: 344 IGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAK 403

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +P+ ++F+ VL+ACSH GL+D G+ +F  M K+++I+ ++ H+  +VDLLGRAG L EA
Sbjct: 404 VQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEA 462

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
              IE    +  +++W  LLG+C   +N  +    A++I EL P     +VLL N+Y + 
Sbjct: 463 NKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASA 522

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           GR +DA K+R +MK SGVKK P  SW+E  ++++
Sbjct: 523 GRLSDAAKVRKMMKESGVKKEPACSWVEIENEVH 556



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 140/247 (56%), Gaps = 5/247 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +LKQG+ +HA + +     ++V+ + +++MY KCG ++E+  +FDKM  K+ VS + L+ 
Sbjct: 120 KLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLIS 179

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q+G     + +F +M  +      F+   +L+A     +   G+++H   ++     
Sbjct: 180 GYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDM 239

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V + S+L+D+YA+   +  A  IF  +  +N+++WN++I+G A+ G GE  +R+F  M 
Sbjct: 240 NVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQML 299

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P H ++  V +AC+  G +++G+   A + K    +P     N ++D+  ++G +
Sbjct: 300 RQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGG-QPIAYIGNTLIDMYAKSGSI 358

Query: 237 EEAETLI 243
           ++A+ + 
Sbjct: 359 KDAKKVF 365



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 110/233 (47%), Gaps = 12/233 (5%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  +L  C  L  L+ G+ +H      +   D+++ + ++++YAKCG ++ A  +F +MP
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +++++W  +ISG++Q+G+  EAL +F  M   G +P+  +   +L A S  G  D   +
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGTGPSDHHGR 226

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
              + + +Y     +   + ++D+  R   + EA+ +  +   ++  S   ++ G     
Sbjct: 227 QLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKG 286

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV--------GRWNDAFKIRT 310
              HV     + + +     H +Y    +V+ A         G+W  A  I++
Sbjct: 287 EGEHVMRLFLQMLRQGFEPTHFTY---SSVFTACASSGSLEQGKWVHAHVIKS 336



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VHA VI  G      + ++L+DMY K G + ++ +VF +++K++ VS ++++ G
Sbjct: 323 LEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISG 382

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +++F +M +  +     +F  VL AC+    L  G+       +      
Sbjct: 383 YAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQ 442

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           V     +VDL  + G ++ A++   +MP++     W +++
Sbjct: 443 VAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 482


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 129/333 (38%), Positives = 202/333 (60%), Gaps = 5/333 (1%)

Query: 2   LKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L  G++VH+ +   + +  +V V ++L+DMY KC  ++ +++VFD+M  KN V+ +A++ 
Sbjct: 228 LNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMIS 287

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G    G +   +  FR M++     D  +   VL +CA L  L +GK VH    R     
Sbjct: 288 GLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILA 347

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + +AL+D+YAKCG +D A ++F  M  R++ ++ +MI G A +G    A ++F +M 
Sbjct: 348 DKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMF 407

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P+ V+F+G+L ACSH GL+  G+K+F  M+ +Y+++P+ EHY CM+DLLGRAGL+
Sbjct: 408 RVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLV 467

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EAE +I   + R D      LLGAC    N  + E V +K+ EL PD   +Y+L+ N+Y
Sbjct: 468 KEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLY 527

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
            +V RW DA KIR  MK   ++K PG S IE +
Sbjct: 528 SSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVD 560



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/266 (34%), Positives = 161/266 (60%), Gaps = 9/266 (3%)

Query: 2   LKQGKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +++G+++HA+ I  G+ G NV V ++L+ +Y  CG + +  +VFD+   ++ VS + L+Q
Sbjct: 126 IREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQ 185

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFG----IVLRACAGLAALRLGKEVHCQYIRR--SG 114
            + + G +   +  F EM ++ L + G    +VL AC+ L  L LG++VH  YIR     
Sbjct: 186 AFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVH-SYIRHYIDM 244

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             DV + +AL+D+Y KC  ++ A+++F +MPV+N++TWN+MISG A  GR  EAL  F  
Sbjct: 245 KADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRM 304

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M + G KPD V+ +GVL++C+++G+++ G+   A M + + +  K    N ++D+  + G
Sbjct: 305 MQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVG-NALLDMYAKCG 363

Query: 235 LLEEAETLIENADCRHDSSLWEVLLG 260
            ++EA  + E+   R   S   ++ G
Sbjct: 364 SIDEAFRVFESMKRRDVYSYTAMIFG 389



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 84/151 (55%), Gaps = 1/151 (0%)

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAH 138
           E D F+  +VL+A A +  +R G+++H + I+      +V + + L+ LY+ CG +    
Sbjct: 107 EPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQ 166

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           ++F + P R+L++W ++I  F + G    A+  F +M +   + D  + + VLSACS++G
Sbjct: 167 KVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLG 226

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            ++ G+K  + +     +K  +   N ++D+
Sbjct: 227 DLNLGQKVHSYIRHYIDMKADVFVGNALLDM 257


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 202/337 (59%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQ 60
           L QG +VH  +  +GL  +V V ++L+ MY KC  + ++   F++M    + VS +A+L 
Sbjct: 383 LYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILT 442

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
              +    E V R+ + M       D  +   VL A A   ++ +G +VHC  ++     
Sbjct: 443 ACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNC 502

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  + + L+DLYAKCG +  AH+IF  M   ++++W+S+I G+AQ G GEEAL++F  M 
Sbjct: 503 DTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMR 562

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               KP+HV+F+GVL+ACSH+GL++ G K + +M KE+ I P  EH +CMVDLL RAG L
Sbjct: 563 RLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCL 622

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE  I       D  +W+ LL AC T  N  V +R A+ I+++ P    ++VLL N+Y
Sbjct: 623 NEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIY 682

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            + G W D  ++R+LMK  GV+K+PG+SWIE   +++
Sbjct: 683 ASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIH 719



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 145/301 (48%), Gaps = 12/301 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA V+      +++ +++L+ MY K  L+ ++  VF +M  ++ +S  +++ G+ Q
Sbjct: 183 GRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQ 242

Query: 65  TGDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            G     +  F+EM    +     F FG V  AC+ L     G+++H   I+    +DV 
Sbjct: 243 LGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVF 302

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
              +L D+YAKCG +  A  +F Q+   +L+ WN++I+GFA  G  +EA+  F  M   G
Sbjct: 303 AGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQG 362

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PD ++   +L AC+    + +G +    + K   +   +   N ++ +  +   L +A
Sbjct: 363 LIPDEITVRSLLCACTSPSELYQGMQVHGYINK-MGLDLDVPVCNTLLTMYAKCSELRDA 421

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKK--IMELKPDCHLSYVLLDNVYR 297
               E   C  D   W  +L AC     A    R+ K   I + +PD    Y+ L NV  
Sbjct: 422 IFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPD----YITLTNVLG 477

Query: 298 A 298
           A
Sbjct: 478 A 478



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 141/265 (53%), Gaps = 7/265 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H  ++      ++ +++ +++MYGKC  + ++ +VFD M ++N VS ++++ G
Sbjct: 79  LEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAG 138

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G   + +  + +M +     D F+FG +++AC+ L  + LG+++H   ++      
Sbjct: 139 YSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAH 198

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +I ++AL+ +Y K   +  A  +F +M  R+LI+W SMI+GF+Q G   EAL  F +M  
Sbjct: 199 IIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLH 258

Query: 178 GGTK-PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G   P+   F  V SACS +   + GR+    M+ ++ +   +     + D+  + GLL
Sbjct: 259 QGVYLPNEFIFGSVFSACSSLLQPEYGRQ-LHGMSIKFGLGRDVFAGCSLCDMYAKCGLL 317

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
             A  +      R D   W  ++  
Sbjct: 318 SCARVVFYQIG-RPDLVAWNAIIAG 341



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 104/191 (54%), Gaps = 6/191 (3%)

Query: 54  SSSALLQGYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQ 108
           SS+  +   C+   F   I+ F  +++     + L ++  ++ AC+ L +L  GK++H  
Sbjct: 29  SSNEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDH 88

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
            ++     D+ +++ ++++Y KC  +  A ++F  MP RN+++W S+I+G++QNG+G  A
Sbjct: 89  MLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNA 148

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           L  +  M + G  PD  +F  ++ ACS +G I  GR+  A + K       I   N ++ 
Sbjct: 149 LEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKS-EFGAHIIAQNALIS 207

Query: 229 LLGRAGLLEEA 239
           +  ++ L+ +A
Sbjct: 208 MYTKSNLIIDA 218


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 201/361 (55%), Gaps = 37/361 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKC------------------------------ 34
           G +VH +V+  G+  ++ VE++LVDMY +C                              
Sbjct: 164 GMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTR 223

Query: 35  -GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
            G VDE+  +F +M ++++VS +A++ GY Q   F   + +FREM+      D F+   V
Sbjct: 224 LGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSV 283

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           + ACA L AL +G+ V   Y+ R G K D  + +AL+D+Y+KCG ++ A  +F  M  R+
Sbjct: 284 ITACAQLGALEMGEWVRV-YMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRD 342

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
             TW ++I G A NG GEEA+ +F  M      PD V+FIGVL+AC+H GL+D+GR+ F 
Sbjct: 343 KFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFL 402

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
           SM + Y I P + HY C++DL GRAG + EA   I+      +S++W  LL AC    N+
Sbjct: 403 SMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNS 462

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            + E V ++++++ P+    Y LL N+Y    RW D  ++R  +   G+KK PG S IE 
Sbjct: 463 EIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEM 522

Query: 329 N 329
           N
Sbjct: 523 N 523



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 37/291 (12%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + VHA V+  G+  N  V +SLV  Y   G    +  +  +  +   V  +AL+ G+ + 
Sbjct: 63  RAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRC 122

Query: 66  GDFE----SVIRIFREMEEIDLFSFGIVLRACA-GLAALRLGKEVHCQYIRRSGCKDVII 120
             F     S + + R        ++  VL AC  G   + LG +VH + +      D+ +
Sbjct: 123 RRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRV 182

Query: 121 ESALVDLYAKC-------------------------------GCVDFAHQIFLQMPVRNL 149
           E+ALVD+YA+C                               G VD A  +F +MP R+ 
Sbjct: 183 ENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDT 242

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ++W +MI G+ Q  R  EAL +F +M       D  + + V++AC+ +G ++ G      
Sbjct: 243 VSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVY 302

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           M+++  IK      N ++D+  + G +E A  + ++   R   +   ++LG
Sbjct: 303 MSRQ-GIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILG 352



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ V   +   G+  +  V ++L+DMY KCG ++ +  VF  M  ++  + +A++ G
Sbjct: 293 LEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILG 352

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CK 116
               G  E  I +F  M    E  D  +F  VL AC     +  G+E             
Sbjct: 353 LAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAP 412

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGE 166
           +V+    ++DL+ + G +  A     QMP+  N   W ++++    +G  E
Sbjct: 413 NVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSE 463



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 16/242 (6%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D ++F  +L+A A  ++    + VH   ++    ++  + ++LV  YA  G    A  + 
Sbjct: 42  DAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALL 101

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH----- 196
            +      + WN++ISG  +  R  EA   F DM   G  P  V+++ VLSAC       
Sbjct: 102 SERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDV 161

Query: 197 -MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
            +G+   GR   + +  + R++      N +VD+      +E A  L +    R   S W
Sbjct: 162 LLGMQVHGRVVGSGVLPDLRVE------NALVDMYAECADMESAWKLFDGMQVRSVVS-W 214

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LL   T       A  +  ++ E      +S+  + + Y    R+ +A ++   M+ S
Sbjct: 215 TSLLSGLTRLGRVDEARDLFGRMPERDT---VSWTAMIDGYVQAARFREALEMFREMQCS 271

Query: 316 GV 317
            V
Sbjct: 272 NV 273


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 198/364 (54%), Gaps = 35/364 (9%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            L  G+ VH  ++  G+  + +V ++L+DMY KCG +  +  VFD+ML K+ VS ++++ 
Sbjct: 253 NLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVN 312

Query: 61  GYCQTGDFESVIRIFREM----------------------EEIDLF-------------S 85
            Y   G  E+ ++IF  M                      E ++LF             +
Sbjct: 313 AYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDAT 372

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              +L  C+    L LGK+ HC          V + ++L+D+YAKCG +  A  IF  MP
Sbjct: 373 LVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMP 432

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +N+++WN +I   A +G GEEA+ +F  M   G  PD ++F G+LSACSH GL+D GR 
Sbjct: 433 EKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRY 492

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +F  M   +RI P +EHY CMVDLLGR G L EA TLI+    + D  +W  LLGAC  +
Sbjct: 493 YFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIY 552

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  +A+++ K+++EL       YVLL N+Y    RW+D  KIR +M  SG+KK    S+
Sbjct: 553 GNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISF 612

Query: 326 IEAN 329
           IE +
Sbjct: 613 IEID 616



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 144/290 (49%), Gaps = 39/290 (13%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VHA+ I LG+  +  V+++++  Y  C L+  + +VFD +  +  VS ++++ GY + G 
Sbjct: 159 VHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGF 218

Query: 68  FESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIES 122
            +  I +F+EM     E D+F+   +L A +    L LG+ VH  YI  +G + D I+ +
Sbjct: 219 CDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHL-YIVITGVEIDSIVTN 277

Query: 123 ALVDLYAKCGCVDFAH-------------------------------QIFLQMPVRNLIT 151
           AL+D+YAKCG + FA                                QIF  MPV+N+++
Sbjct: 278 ALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVS 337

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
           WNS+I    Q G+  EA+ +F  M   G  PD  + + +LS CS+ G +  G++    + 
Sbjct: 338 WNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYIC 397

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
               I   +   N ++D+  + G L+ A  +      ++  S W V++GA
Sbjct: 398 DNI-ITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVS-WNVIIGA 445



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 127/249 (51%), Gaps = 7/249 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K+ K VHA++I  GL   VV    L+ +  + G +  +H +FD++ + N    + L++G
Sbjct: 52  MKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRG 111

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y  + D    + +FR+M       + F+F  VL+ACA          VH Q I+      
Sbjct: 112 YSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPH 171

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +++A++  Y  C  +  A Q+F  +  R +++WNSMI+G+++ G  +EA+ +F +M +
Sbjct: 172 ACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQ 231

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G + D  + + +LSA S    +D GR  H   +     I   +   N ++D+  + G L
Sbjct: 232 LGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVT--NALIDMYAKCGHL 289

Query: 237 EEAETLIEN 245
           + A+ + + 
Sbjct: 290 QFAKHVFDQ 298


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 123/332 (37%), Positives = 208/332 (62%), Gaps = 4/332 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++H   +   +  N+ V ++L+D+Y KCG++ ++ +VF+ M  K+SV+ S+++ GY Q 
Sbjct: 174 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQN 233

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
            ++E  + ++R  + + L    F+   V+ AC+ LAAL  GK++H    +     +V + 
Sbjct: 234 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVA 293

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           S+ VD+YAKCG +  ++ IF ++  +NL  WN++ISGFA++ R +E + +F+ M + G  
Sbjct: 294 SSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMH 353

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+ V+F  +LS C H GL++ GR+ F  M   Y + P + HY+CMVD+LGRAGLL EA  
Sbjct: 354 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYE 413

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           LI++      +S+W  LL +C  ++N  +AE  A+K+ EL+P+   ++VLL N+Y A  +
Sbjct: 414 LIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQ 473

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           W +  K R L++   VKK+ GKSWI+   K++
Sbjct: 474 WEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVH 505



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 131/261 (50%), Gaps = 6/261 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           + K  H K+I + L G+V + + L++ Y KCG V+ + +VFD ML+++ VS + ++  Y 
Sbjct: 71  EAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 130

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           +       + IF EM     +   F+   VL AC         K++HC  ++     ++ 
Sbjct: 131 RNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLY 190

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+DLYAKCG +  A Q+F  M  ++ +TW+SM++G+ QN   EEAL ++       
Sbjct: 191 VGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMS 250

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            + +  +   V+ ACS++  +  G++  A + K       +   +  VD+  + G L E+
Sbjct: 251 LEQNQFTLSSVICACSNLAALIEGKQMHAVICKS-GFGSNVFVASSAVDMYAKCGSLRES 309

Query: 240 ETLIENADCRHDSSLWEVLLG 260
             +        +  LW  ++ 
Sbjct: 310 YIIFSEVQ-EKNLELWNTIIS 329



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 59/106 (55%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ CA   A+   K  H + IR     DV + + L++ Y+KCG V+ A Q+F  M  R+
Sbjct: 59  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           L++WN+MI  + +N    EAL IF +M   G K    +   VLSAC
Sbjct: 119 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 164



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK++HA +   G   NV V SS VDMY KCG + ES+ +F ++ +KN    + ++ G
Sbjct: 271 LIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISG 330

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CK 116
           + +    + V+ +F +M++  +     +F  +L  C     +  G+          G   
Sbjct: 331 FAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSP 390

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISG 158
           +V+  S +VD+  + G +  A+++   +P     + W S+++ 
Sbjct: 391 NVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 433


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 207/365 (56%), Gaps = 40/365 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GKEVHA+ +  GL  N  V  +LV+MY KC  +  +   FD + ++++ + + L+ G
Sbjct: 293 LRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISG 352

Query: 62  YC-----------------------------------QTGDFESVIRIFREME----EID 82
           Y                                    + G  E  +R+F EM+      D
Sbjct: 353 YACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPD 412

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
           +++ GI+L ACA LA +  GK+VH   IR+    DV I +ALVD+YAKCG +  A Q++ 
Sbjct: 413 IYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYN 472

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           ++   NL++ N+M++ +A +G G+E + +F +M   G +PDHV+F+ VLS+C H G ++ 
Sbjct: 473 RISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVET 532

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           G + F  MT  Y + P ++HY C+VDLL RAG L+EA  L++    + DS +W  LLG C
Sbjct: 533 GHEFFDLMTY-YNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGC 591

Query: 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
             + N  + E  A+ ++EL+P+   +YVLL N+Y   GRW+D  + R ++K  G+ K PG
Sbjct: 592 VIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPG 651

Query: 323 KSWIE 327
            SWIE
Sbjct: 652 CSWIE 656



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 154/290 (53%), Gaps = 27/290 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+VHA  +  G  G+  VE+ L+ MYG+ G +D+++ VF KM ++N  S +A+L  
Sbjct: 75  LNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILSV 134

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR----- 112
           +   G FE  + +F +++     ++ F F +VL+ C GL  L LG+++H   I+R     
Sbjct: 135 HVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMG 194

Query: 113 ------SG--CKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--RNLITWNSMISGFAQN 162
                 SG   K+V+  + ++  Y + G V+ A ++F QM +  ++ I+WNSMISG+A N
Sbjct: 195 SALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADN 254

Query: 163 GRGEEALRIFDD-MTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKI 220
              +EAL +F D + E G + D  +   VL+AC+ M  + RG++ H  ++ +       +
Sbjct: 255 LLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFV 314

Query: 221 EHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA---CTTFRN 267
                +V++  +   L+ A+   +    R D++ W VL+     C    N
Sbjct: 315 G--GALVEMYSKCEDLKAAQLAFDGVTER-DTATWNVLISGYACCNQLEN 361



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 131/263 (49%), Gaps = 45/263 (17%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALLQGYCQTGDFESVIRIFRE 77
           NVV  ++++  Y + G V+++  +FD+M  + K+++S ++++ GY     F+  + +FR+
Sbjct: 207 NVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRD 266

Query: 78  --MEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132
             MEE    D F+ G VL ACA +A+LR GKEVH Q + R    +  +  ALV++Y+KC 
Sbjct: 267 LLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCE 326

Query: 133 CVDFAHQIFLQMPVRNLITWNSMISGFA-------------------------------- 160
            +  A   F  +  R+  TWN +ISG+A                                
Sbjct: 327 DLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIIS 386

Query: 161 ---QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRI 216
              +NG  E ALR+F +M     +PD  +   +L AC+ +  I RG++ H  S+ + Y +
Sbjct: 387 GHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYEL 446

Query: 217 KPKIEHYNCMVDLLGRAGLLEEA 239
              I     +VD+  + G ++ A
Sbjct: 447 DVHIG--AALVDMYAKCGSIKHA 467



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 70/127 (55%), Gaps = 3/127 (2%)

Query: 79  EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
           ++ID  ++  +L +C     L LGK+VH   ++        +E+ L+ +Y + GC+D A+
Sbjct: 58  KQIDSSTYASLLESCR---TLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDAN 114

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +F++MP RNL +W +++S    +G  EEAL +F+ +       +   F  VL  C  + 
Sbjct: 115 LVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLR 174

Query: 199 LIDRGRK 205
           +++ GR+
Sbjct: 175 VLELGRQ 181


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/329 (37%), Positives = 201/329 (61%), Gaps = 4/329 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK++H+ ++ LG   ++   ++LVDMY K G + ++ + FD + +++    ++L+ G
Sbjct: 327 LVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISG 386

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  D E  + ++R M+   +     +   VL+AC+ LA L LGK+VH   I+     +
Sbjct: 387 YVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLE 446

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I SAL  +Y KCG ++  + +F + P +++++WN+MISG + NG+G+EAL +F++M  
Sbjct: 447 VPIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLA 506

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            GT+PD V+F+ ++SACSH G ++RG  +F  M+ ++ + PK++HY CMVD+L RAG L+
Sbjct: 507 EGTEPDDVTFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLK 566

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E +  IE+A   H   LW +LL AC    N  +     +K+M L      +YV L  +Y 
Sbjct: 567 ETKEFIESASIDHGLCLWRILLSACKNHGNCELGVYAGEKLMSLGSRESSTYVQLAGIYT 626

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           A+GR  D  ++  LM+ +GV K  G SWI
Sbjct: 627 ALGRMRDVERVWKLMRTNGVSKEVGCSWI 655



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 116/210 (55%), Gaps = 14/210 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H   +  GL G V + ++LV MY KC  ++E+ ++FD    +NS++ SA++ GY Q
Sbjct: 229 GRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQ 288

Query: 65  TGDFESVIRIFREMEEIDLFSFGI---------VLRACAGLAALRLGKEVHCQYIRRSGC 115
            G+    I++F  M     FS GI         VL AC+ +  L  GK++H   ++    
Sbjct: 289 NGESLEAIKLFSRM-----FSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFE 343

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           + +   +ALVD+YAK GC+  A + F  +  R++  W S+ISG+ QN   EEAL ++  M
Sbjct: 344 RHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRM 403

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
              G  P+  +   VL ACS +  ++ G++
Sbjct: 404 KTAGIIPNDPTMASVLKACSSLATLELGKQ 433



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 126/258 (48%), Gaps = 15/258 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQGYC 63
           G++ HA V+ +   G++ V++SLV MY K GL       +   L  K  V    L    C
Sbjct: 139 GRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLKYLYMVYYGFWLCYKKDVLRRQLKSSIC 198

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
              +        +E E    + F  VL + A    + LG+++H   ++      V + +A
Sbjct: 199 FLEE--------KEKESDSDYVFTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNA 250

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           LV +Y+KC  ++ A ++F     RN ITW++M++G++QNG   EA+++F  M   G KP 
Sbjct: 251 LVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPS 310

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
             + +GVL+ACS +  +  G K   S   +   +  +     +VD+  +AG L +A    
Sbjct: 311 EYTIVGVLNACSDICYLVEG-KQLHSFLLKLGFERHLFATTALVDMYAKAGCLADAR--- 366

Query: 244 ENADC--RHDSSLWEVLL 259
           +  DC    D +LW  L+
Sbjct: 367 KGFDCLQERDVALWTSLI 384



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 78/138 (56%), Gaps = 7/138 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VHA++I  G        + LV+ Y KCG + ++H +F+ ++ K+ VS ++L+ G
Sbjct: 32  LVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITG 91

Query: 62  YCQTGDFES---VIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y Q G   S   V+++FREM   D+    ++   + +A + L +  +G++ H   ++ S 
Sbjct: 92  YSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSS 151

Query: 115 CKDVIIESALVDLYAKCG 132
             D+ ++++LV +Y K G
Sbjct: 152 FGDIYVDTSLVGMYCKAG 169



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 99  LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
           L  G+ VH Q IR          + LV+ YAKCG +  AH IF  +  +++++WNS+I+G
Sbjct: 32  LVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITG 91

Query: 159 FAQNG---RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           ++QNG        +++F +M      P+  +  G+  A S +     GR+  A + K
Sbjct: 92  YSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSCTVGRQAHALVVK 148


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 208/335 (62%), Gaps = 6/335 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+ +       ++ V SSL+DMY K G + E+  VF+ + +++ VS +A++ GY Q
Sbjct: 130 GRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 189

Query: 65  TGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + +F    RE    +  ++  +L A +GLAAL  GK+VH   +R      V++
Sbjct: 190 LGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVL 249

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGG 179
           +++L+D+Y+KCG +++A +IF  MPVR +I+WN+M+ G++++G+G E +++F  M  E  
Sbjct: 250 QNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENK 309

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY-RIKPKIEHYNCMVDLLGRAGLLEE 238
            KPD V+F+ VLS CSH GL D+G + F  M      I+  IEHY C++DLLGRAG +EE
Sbjct: 310 VKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEE 369

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A  LI+       +++W  LLGAC    N ++ E V  +++E++P+   +YV+L N+Y +
Sbjct: 370 AFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYAS 429

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            GRW D   +R LM    V K PG+SWIE +  ++
Sbjct: 430 AGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIH 464



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 155/293 (52%), Gaps = 15/293 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+ VHA +I       V + + L+ +Y KC  +  +  VFD+M ++N VS +A++ G
Sbjct: 26  VREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISG 85

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F +M     E + F+F  VL +C G +   LG+++H    +R+    
Sbjct: 86  YSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENH 145

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + S+L+D+YAK G +  A  +F  +P R++++  ++ISG+AQ G  EEAL +F  +  
Sbjct: 146 IFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQR 205

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRA 233
            G   ++V++  +L+A S +  +D G++        + ++ ++  Y    N ++D+  + 
Sbjct: 206 EGMSSNYVTYASLLTALSGLAALDHGKQ-----VHSHVLRCELPFYVVLQNSLIDMYSKC 260

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE--RVAKKIMELKPD 284
           G L  A  +  N   R   S   +L+G     +   V +  ++ ++  ++KPD
Sbjct: 261 GNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPD 313



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 1/165 (0%)

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           EI    + ++L  C    A+R G+ VH   I+      V + + L+ LY KC C+  A  
Sbjct: 7   EIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARH 66

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +M  RN+++W +MISG++Q G   EAL +F  M    T+P+  +F  VLS+C+    
Sbjct: 67  VFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSG 126

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
            + GR+  + + K    +  I   + ++D+  +AG + EA  + E
Sbjct: 127 FELGRQIHSHIFKR-NYENHIFVGSSLLDMYAKAGRIHEARGVFE 170


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 204/334 (61%), Gaps = 5/334 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           QG+++H   +  G   NV V  +++DMY +C  ++E+  +FD M+ KN VS +AL+ GY 
Sbjct: 136 QGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYA 195

Query: 64  QTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           + G  +    +F    RE  +   F++  VL ACA + +L  GK VH   I+        
Sbjct: 196 RKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAF 255

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + + L+D+YAK G ++ A ++F ++  R++++WNSM++G++Q+G G+ AL+ F++M    
Sbjct: 256 VGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTR 315

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             P+ ++F+ VL+ACSH GL+D GR H+  M K+Y ++P+I HY  MVDLLGRAG L+ A
Sbjct: 316 IAPNDITFLCVLTACSHAGLLDEGR-HYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRA 374

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
              I     +  +++W  LLGAC   +N  +    A+ I EL      ++VLL N+Y   
Sbjct: 375 IQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALA 434

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           GRWNDA K+R +MK SGVKK P  SW+E  ++++
Sbjct: 435 GRWNDAAKVRKMMKESGVKKEPACSWVEMENEVH 468



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 154/267 (57%), Gaps = 12/267 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +L +GK +HA ++      ++V++++L+++Y KCG +  + ++FD+M  ++ V+ +AL+ 
Sbjct: 30  KLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALIT 89

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRL--GKEVHCQYIRRSG 114
           GY Q    +  + +  EM  I L    F+   +L+A +G+ +  +  G+++H   +R   
Sbjct: 90  GYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGY 149

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             +V +  A++D+YA+C  ++ A  IF  M  +N ++WN++I+G+A+ G+G++A  +F +
Sbjct: 150 DSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSN 209

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGR 232
           M     KP H ++  VL AC+ MG +++G+   A M K      K+  +  N ++D+  +
Sbjct: 210 MLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIK---WGEKLVAFVGNTLLDMYAK 266

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLL 259
           +G +E+A+ + +    + D   W  +L
Sbjct: 267 SGSIEDAKKVFDRL-AKRDVVSWNSML 292



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 95/174 (54%), Gaps = 4/174 (2%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ C  L  L  GK +H   +      D+++++ L++LYAKCG + +A ++F +M  R+
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID--RGRKH 206
           ++TW ++I+G++Q+ R ++AL +  +M   G KP+  +   +L A S +G  D  +GR+ 
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ- 139

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              +   Y     +     ++D+  R   LEEA+ + +    +++ S W  L+ 
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVS-WNALIA 192



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 15/183 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VHA +I  G      V ++L+DMY K G ++++ +VFD++ K++ VS +++L G
Sbjct: 235 LEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTG 294

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  ++ F EM    +     +F  VL AC+    L  G+       + +    
Sbjct: 295 YSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQ 354

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +     +VDL  + G +D A Q   +MP++     W +++           A R+  +M 
Sbjct: 355 ISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLG----------ACRMHKNME 404

Query: 177 EGG 179
            GG
Sbjct: 405 LGG 407


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 135/328 (41%), Positives = 204/328 (62%), Gaps = 17/328 (5%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFR-- 76
              VV  +LV++YGKCG VD++ RV D M  + SVS +A++  Y Q G+    I +F+  
Sbjct: 326 ATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCM 385

Query: 77  -----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG--CKDVIIESALVDLYA 129
                E  +I L S   V+ +CA L  L LGK +H + IR S    + +++ +A++ +Y 
Sbjct: 386 DLEGAEPSDITLIS---VVDSCAVLGTLSLGKRIHAR-IRSSPLFSQSLMLLNAVITMYG 441

Query: 130 KCGCVDFAHQIFLQMPVR--NLITWNSMISGFAQNGRGEEALRIFDDMT-EGGTKPDHVS 186
           KCG ++ A ++F  +P+R  +++TW +MI  +AQNG GEEA+ +F +M  +GGT+P+ V+
Sbjct: 442 KCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVT 501

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET-LIEN 245
           F+ VLSACSH+G +++  +HF SM  ++ + P  +HY C+VDLLGRAG L EAE  L+ +
Sbjct: 502 FLSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRH 561

Query: 246 ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305
            D   D   W   L AC    +   ++R AK++ EL+P+     VLL NVY A GR  D 
Sbjct: 562 KDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADV 621

Query: 306 FKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            +IR  MK SGVKK  G+SWIE N++++
Sbjct: 622 ARIRNEMKSSGVKKFAGRSWIEINNRVH 649



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 119/243 (48%), Gaps = 2/243 (0%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N    S L+  Y + G +D + + FD+M +++S++ +A+       G+      + R + 
Sbjct: 231 NAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAREMLRYLS 290

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
            +D+ ++  +L   +    L   + +      R+     ++   LV+LY KCG VD A +
Sbjct: 291 AVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRT-VATTVVAGTLVNLYGKCGRVDDARR 349

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +   MPVR  ++W +MI+ +AQNG   EA+ +F  M   G +P  ++ I V+ +C+ +G 
Sbjct: 350 VLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGT 409

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL-WEVL 258
           +  G++  A +         +   N ++ + G+ G LE A  + E+   R  S + W  +
Sbjct: 410 LSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAM 469

Query: 259 LGA 261
           + A
Sbjct: 470 IRA 472



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 104/210 (49%), Gaps = 4/210 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +L + K +H ++       N  + + L+D++GKCG  D +  VF+++   N  S S ++Q
Sbjct: 22  KLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQ 81

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            Y  +        +F  M   D F++ I++ A A +  L   +E+    I  SG +DV+ 
Sbjct: 82  AYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGMI--SG-RDVVS 138

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + LV  YA+   ++ A  +F +MP+ + +T  S++ G+A NG   EA  +FD +   G 
Sbjct: 139 WAILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGD 198

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           + D  +   +++A      +D     FA +
Sbjct: 199 R-DATACNAMIAAYGKNARVDLAEGLFAQI 227



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 121/276 (43%), Gaps = 34/276 (12%)

Query: 27  LVDMYGKCGLVDESHRVFDKMLK-KNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFS 85
           ++  Y +   +D++  +F  M+  ++ VS + L+ GY +    E    +FR M   D  +
Sbjct: 110 MIAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLEEASALFRRMPLWDTVT 169

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              VL+  A    L   +E+    I  +G +D    +A++  Y K   VD A  +F Q+ 
Sbjct: 170 CTSVLQGYAHNGHLAEAQELF-DRIGGAGDRDATACNAMIAAYGKNARVDLAEGLFAQIK 228

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG-------------------------- 179
           +RN  +W+ ++  +AQNG  + A + FD M +                            
Sbjct: 229 LRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAREMLRY 288

Query: 180 -TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            +  D +++  +L   S  G +D  R+ F++M  E+R          +V+L G+ G +++
Sbjct: 289 LSAVDVIAWNALLEGYSRTGDLDEVRRLFSAM--EHRTVATTVVAGTLVNLYGKCGRVDD 346

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
           A  +++    R   S W  ++ A    +N + AE +
Sbjct: 347 ARRVLDAMPVRTSVS-WTAMIAAYA--QNGNAAEAI 379



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 21/188 (11%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           +RACA    L   K +H +  R     +  + + L+DL+ KCG  D A  +F ++ + N 
Sbjct: 14  IRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNE 73

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
            +W+ +I  +  + R  +A  +FD M       D  ++  +++A + +  +D  R+ F  
Sbjct: 74  YSWSCIIQAYVSSSRIHDARALFDSM----PGFDAFTWNIMIAAYARINRLDDARELFHG 129

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF---- 265
           M         +  +  +V    R   LEEA  L           LW+ +   CT+     
Sbjct: 130 MIS----GRDVVSWAILVAGYARHDRLEEASALFRRM------PLWDTV--TCTSVLQGY 177

Query: 266 -RNAHVAE 272
             N H+AE
Sbjct: 178 AHNGHLAE 185


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 124/336 (36%), Positives = 201/336 (59%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  +H   +  G   +V V +  + MY KCG V+ + ++FD+M  K  +S +A++ G
Sbjct: 168 LELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSG 227

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G   +V+ ++R M+      D  +   VL +CA L A  +G EV  +        +
Sbjct: 228 YAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSN 287

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+++YA+CG +  A  +F  MP R L++W ++I G+  +G GE A+++F +M  
Sbjct: 288 PFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR 347

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD  +F+ VLSACSH GL D+G ++F  M + Y+++P  EHY+CMVDLLGRAG L+
Sbjct: 348 SGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLK 407

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+TLIE+   + D ++W  LLGAC   +N  +AE   ++++EL+P+    YVLL N+Y 
Sbjct: 408 EAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYS 467

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
                    +IR +MK   +KK PG S++E   +++
Sbjct: 468 NANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVH 503



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 152/289 (52%), Gaps = 12/289 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KKNSVSSSALLQGY 62
           G + H ++  +G      V++ L+ MY K  LVD + +VF++    +K +V  +AL+ GY
Sbjct: 68  GSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGY 127

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
                    + +FR+M E    ++  +   ++ AC     L LG  +HC  ++     DV
Sbjct: 128 VSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDV 187

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +  + +Y KCG V++A ++F +MPV+ LI+WN+M+SG+AQNG     L ++ +M   
Sbjct: 188 SVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMN 247

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  PD V+ +GVLS+C+++G    G +  F      +   P +   N ++++  R G L 
Sbjct: 248 GVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLN--NALINMYARCGNLT 305

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           +A+ + +    R   S W  ++G      +  +A ++ K+++   ++PD
Sbjct: 306 KAQAVFDGMPERTLVS-WTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPD 353



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 89/175 (50%), Gaps = 5/175 (2%)

Query: 73  RIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKC 131
           ++ R  +  + F+F   L++CA L+   LG + H Q I + GC  +  +++ L+ +Y K 
Sbjct: 39  QMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQ-ITKVGCVFEPFVQTGLISMYCKG 97

Query: 132 GCVDFAHQIFLQ-MPVRNL-ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
             VD A ++F +    R L + +N+++SG+  N +  EA+ +F  M E G   + V+ +G
Sbjct: 98  SLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLG 157

Query: 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           ++ AC     ++ G     S T +Y     +   NC + +  + G +  A+ L +
Sbjct: 158 LIPACVSPINLELGSSLHCS-TLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 211


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 212/337 (62%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK +H  V+ LG+ G   V +SL++MYGK G +D + ++F++M  ++ VS ++++  
Sbjct: 257 LDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVI 316

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           +   G  E  + +F  M+      D  +   +LRAC      R  + +H  YI R G   
Sbjct: 317 HNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHA-YIHRCGFNA 375

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+II +AL++LYAK G ++ +  IF ++  R+ I W +M++G+A +  G EA+++FD M 
Sbjct: 376 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMV 435

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G + DHV+F  +LSACSH GL++ G+K+F  M++ YR++P+++HY+CMVDLLGR+G L
Sbjct: 436 KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRL 495

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E+A  LI++      S +W  LLGAC  + N  + + VA++++ L P  H +Y++L N+Y
Sbjct: 496 EDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIY 555

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A G W  A K+R LMK   + + PG S+IE  +K++
Sbjct: 556 SAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIH 592



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 138/284 (48%), Gaps = 21/284 (7%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +HA+VI      +  +   LV MY K G  +++ R+FD+M  ++ VS ++L+ G    G 
Sbjct: 161 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGY 220

Query: 68  FESVIRIF--------REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             + +  F        R+  E+ L S   V+ ACA + AL  GK +H   ++        
Sbjct: 221 LGACLNAFCRMRTESGRQPNEVTLLS---VVSACAXMGALDEGKSLHGVVVKLGMSGKAK 277

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+++Y K G +D A Q+F +MPVR+L++WNSM+     NG  E+ + +F+ M   G
Sbjct: 278 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 337

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR--IKPKIEHYNCMVDLLGRAGLLE 237
             PD  + + +L AC+  GL   GR+  +     +R      I     +++L  + G L 
Sbjct: 338 INPDQATMVALLRACTDTGL---GRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLN 394

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281
            +E + E    R D+  W  +L         H   R A K+ +L
Sbjct: 395 ASEDIFEEIKDR-DTIAWTAMLAGYAV----HACGREAIKLFDL 433


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 133/337 (39%), Positives = 205/337 (60%), Gaps = 7/337 (2%)

Query: 3   KQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           K  + VH  ++  G L   VV+ ++++DMY K G++D +H+VF+ +  K+ VS + L+ G
Sbjct: 391 KNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISG 450

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q G     I ++R MEE     ++  ++  +L A A + AL+ G  +H   I+ +   
Sbjct: 451 YTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHL 510

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV + + L+DLY KCG +  A  +F Q+P  + + WN++IS    +G GE+AL++F +M 
Sbjct: 511 DVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQ 570

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G KPDHV+FI +LSACSH GL+D G K F  + +EY IKP ++HY CMVDLLGRAG L
Sbjct: 571 DEGVKPDHVTFISLLSACSHSGLVDEG-KWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFL 629

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E A   I++     D+S+W  LLGAC    N  + +  + ++ E+  +    YVLL N+Y
Sbjct: 630 EMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIY 689

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             VG+W    K+R+L +  G+KK PG S IE N +++
Sbjct: 690 ANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVD 726



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 132/266 (49%), Gaps = 18/266 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            K +HA ++  G   +  +   LV++Y   G V  S   FD++ +K+  + ++++  Y +
Sbjct: 92  AKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVR 151

Query: 65  TGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            G F   I  F ++      + D ++F  VL+AC  L     G+++HC   +     DV 
Sbjct: 152 NGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVF 208

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+ +Y++ G V  A  +F  MP R++ +WN+MISG  QNG   +AL + D+M   G
Sbjct: 209 VAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 268

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGL 235
              D V+   +L  C+ +G I       A++   Y IK  +E      N ++++  + G 
Sbjct: 269 INMDSVTVASILPVCAQLGDIST-----ATLIHLYVIKHGLEFELFVSNALINMYAKFGN 323

Query: 236 LEEAETLIENADCRHDSSLWEVLLGA 261
           L +A+ + +    R D   W  ++ A
Sbjct: 324 LGDAQKVFQQMFLR-DVVSWNSIIAA 348



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 125/266 (46%), Gaps = 5/266 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H  V  LG   +V V +SL+ MY + G V  +  +FD M  ++  S +A++ G
Sbjct: 188 LVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISG 247

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G+    + +  EM      +D  +   +L  CA L  +     +H   I+     +
Sbjct: 248 LIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFE 307

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+++YAK G +  A ++F QM +R++++WNS+I+ + QN     A   F  M  
Sbjct: 308 LFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQL 367

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD ++ + + S  +        R     + +   +   +   N ++D+  + G+++
Sbjct: 368 NGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVID 427

Query: 238 EAETLIENADCRHDSSLWEVLLGACT 263
            A  +      + D   W  L+   T
Sbjct: 428 SAHKVFNLIPVK-DVVSWNTLISGYT 452



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 79/150 (52%), Gaps = 6/150 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG  +H  +I   L  +V V + L+D+YGKCG + ++  +F ++ +++SV  +A++  
Sbjct: 493 LQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISC 552

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G  E  +++FREM++     D  +F  +L AC+    +  GK      ++  G K 
Sbjct: 553 HGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFF-HLMQEYGIKP 611

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPV 146
            +     +VDL  + G ++ A+     MP+
Sbjct: 612 SLKHYGCMVDLLGRAGFLEMAYDFIKDMPL 641



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 12/194 (6%)

Query: 79  EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
           EEID   F  +  +C       L K +H   +     +   I   LV+LYA  G V  + 
Sbjct: 75  EEID---FNSLFDSCT---KTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSR 128

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD-MTEGGTKPDHVSFIGVLSACSHM 197
             F Q+  +++ TWNSMIS + +NG   EA+  F   +     + D  +F  VL AC   
Sbjct: 129 GTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQ-- 186

Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
            L+D GRK    + K    +  +     ++ +  R G +  A +L ++   R D   W  
Sbjct: 187 TLVD-GRKIHCWVFK-LGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFR-DMGSWNA 243

Query: 258 LLGACTTFRNAHVA 271
           ++       NA  A
Sbjct: 244 MISGLIQNGNAAQA 257


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 130/334 (38%), Positives = 201/334 (60%), Gaps = 6/334 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RL +G+E+H++++  GL     + + L+ +Y  CG +D +  +FD+M + +S S S ++ 
Sbjct: 82  RLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVS 141

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q G     +++ REM+      D F+   V+  C  L  L LGK VH  YI + G K
Sbjct: 142 GYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVH-SYIDKEGVK 200

Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV++ +ALV +Y+KCG +D A ++F  M  R++ TW+ MI+G+A +G  E+AL++FD M
Sbjct: 201 IDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAM 260

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                 P+ V+F  VLSA SH GL+++G + F +M  EY+I P+I+HY CMVDL  RAG+
Sbjct: 261 KRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGM 320

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           +  A   I+      +  LW  LLGAC T     + E +++KI++L P    +YV + NV
Sbjct: 321 VGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNV 380

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           Y ++GRW+   ++R+LMK    KK  G S IE N
Sbjct: 381 YASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEIN 414



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 128/257 (49%), Gaps = 8/257 (3%)

Query: 35  GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVL 90
           G V  +H +F      N    + +++GY  +    S I ++++M       + ++FG VL
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
            AC  L  L  G+E+H Q ++     +  + + L+ LYA CGC+D+A  +F +MP  +  
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           +W++M+SG++QNG+  E L++  +M       D  +   V+  C  +G++D G+   + +
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYI 194

Query: 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHV 270
            KE  +K  +     +V +  + G L+ A  + +    R D + W +++       +   
Sbjct: 195 DKE-GVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAER-DVTTWSIMIAGYAIHGHDEK 252

Query: 271 AERV--AKKIMELKPDC 285
           A ++  A K  ++ P+C
Sbjct: 253 ALQLFDAMKRSKIIPNC 269


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 132/318 (41%), Positives = 195/318 (61%), Gaps = 7/318 (2%)

Query: 16  GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
           G+C N    S++V +   C  +  + ++FD M  +N VS SA++ GY  +   +  + IF
Sbjct: 205 GICPN---SSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIF 261

Query: 76  REME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131
           R M+    + DL +   VL AC+ LAAL+ G   H   I R    D +I +AL+D+Y+KC
Sbjct: 262 RMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKC 321

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           G + FA ++F +M   ++++WN+MI G+  +G G EAL +F D+   G KPD ++FI +L
Sbjct: 322 GKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLL 381

Query: 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           S+CSH GL+  GR  F +M++++ I P++EH  CMVD+LGRAGL++EA   I N     D
Sbjct: 382 SSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPD 441

Query: 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311
             +W  LL AC   +N  + E V+KKI  L P+   ++VLL N+Y A GRW+DA  IR  
Sbjct: 442 VRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRIT 501

Query: 312 MKYSGVKKMPGKSWIEAN 329
            K  G+KK+PG SWIE N
Sbjct: 502 QKDWGLKKIPGCSWIEIN 519



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 103/197 (52%), Gaps = 4/197 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L + K++H   +      +  V   L  +Y  C  V  + R+FD++   + +  + +++ 
Sbjct: 24  LTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRA 83

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G F+  I ++  M  + +    +++  VL+AC+GL A+  G E+H          D
Sbjct: 84  YAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESD 143

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +ALVD YAKCG +  A ++F  M  R+++ WN+MI+G +  G  ++A+++   M E
Sbjct: 144 VFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQE 203

Query: 178 GGTKPDHVSFIGVLSAC 194
            G  P+  + +GVL  C
Sbjct: 204 EGICPNSSTIVGVLPTC 220



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 87/177 (49%), Gaps = 2/177 (1%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L AC    +L   K++H  +++ +   D  +   L  LY  C  V  A ++F ++P  +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +I WN +I  +A NG  + A+ ++  M   G +P+  ++  VL ACS +  I+ G +   
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           S  K + ++  +     +VD   + G+L EA+ L  +   R D   W  ++  C+ +
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLY 188



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G   H  +I  G   + ++ ++L+DMY KCG +  +  VF++M + + VS +A++ G
Sbjct: 289 LQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIG 348

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     + +F ++  + L     +F  +L +C+  + L +   +    + R     
Sbjct: 349 YGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSH-SGLVMEGRLWFDAMSRDFSIV 407

Query: 118 VIIES--ALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
             +E    +VD+  + G +D AH     MP   ++  W++++S 
Sbjct: 408 PRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSA 451


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 200/338 (59%), Gaps = 7/338 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++ HA+ +       V V ++LVDMY KC   ++++R+F  +  +NSV  +A++  
Sbjct: 361 LSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISI 420

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  +++F+EM  E +  D  +F   L+A A LA++ LGK++H   IR      
Sbjct: 421 YVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSS 480

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   S LVD+YA CG +  A ++F +MP RN++ WN++IS ++QNG  E     F DM E
Sbjct: 481 VFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIE 540

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD VSF+ VL+ACSH GL+++   +F SMT+ Y++ P+ +HY  M+D+L R+G   
Sbjct: 541 SGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFN 600

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP--DCHLSYVLLDNV 295
           EAE LI       D  +W  +L +C   +N  +A++ A ++ ++    D   +YV + N+
Sbjct: 601 EAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDA-AAYVNMSNI 659

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           Y   G+W +A K++  M+  GVKK+   SW+E + +++
Sbjct: 660 YAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVH 697



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 140/287 (48%), Gaps = 10/287 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H   I      ++ V ++L+D Y K   +D +  +FD+M + + VS + ++ GY  
Sbjct: 263 GQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAW 322

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G +E    +F+ ++        F F  +L   A    L +G++ H Q +  +   +V +
Sbjct: 323 NGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQV 382

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVD+YAKC   + A++IF  +  RN + W ++IS + Q G  EEAL++F +M     
Sbjct: 383 GNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENV 442

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA- 239
             D  +F   L A +++  +  G++  +S+ +   +   +   + +VD+    G +++A 
Sbjct: 443 HGDQATFASTLKASANLASVSLGKQLHSSVIR-LGLLSSVFSGSVLVDMYANCGSMKDAI 501

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           E   E  D   +   W  L+ A +   +A         ++E  L PD
Sbjct: 502 EVFKEMPD--RNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPD 546



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 136/263 (51%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+  ++H+ +I  G   +++V +SLVD Y K   +D + ++F +M  K+SVS + ++ G
Sbjct: 159 LKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITG 218

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  E  +++F +M  +D     F+F  +L    G   +  G+++H   I+ S   D
Sbjct: 219 YTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWD 278

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+D Y+K   +D A  +F +MP  + +++N +I+G+A NG+ E++  +F  +  
Sbjct: 279 IFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQG 338

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
                 +  F  +LS  +    +  GR+  A       +  +++  N +VD+  +    E
Sbjct: 339 TSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVS-EVQVGNALVDMYAKCEKFE 397

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +A  +  N   R +S  W  ++ 
Sbjct: 398 DANRIFANLAYR-NSVPWTAIIS 419



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 4/169 (2%)

Query: 27  LVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEID 82
           +V  Y K   +  +  +F+ M  +N VS + ++ GY Q    +    ++ EM     + D
Sbjct: 83  MVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPD 142

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
             +F  +L        L+   ++H   IR      +I+ ++LVD Y K  C+D A Q+F 
Sbjct: 143 HITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFS 202

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           +MP ++ +++N MI+G+ + G  EEAL++F  M     +P   +F  +L
Sbjct: 203 EMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAML 251



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           +V  Y K   +  A ++F  M  RN ++W  MI G++QN + +EA  ++ +M   G KPD
Sbjct: 83  MVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPD 142

Query: 184 HVSFIGVLS 192
           H++F  +LS
Sbjct: 143 HITFATLLS 151


>gi|242085550|ref|XP_002443200.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
 gi|241943893|gb|EES17038.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
          Length = 502

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 130/322 (40%), Positives = 198/322 (61%), Gaps = 13/322 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFR--E 77
           NVVV  +L+DMY K G++ ++ RVFD+M ++++V  + ++ GY + G  E  + +FR  +
Sbjct: 137 NVVVSGALLDMYAKTGMLADATRVFDEMPERDAVVWNCMVTGYARAGRSEETLELFRKAQ 196

Query: 78  MEEID----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC----KDVIIESALVDLYA 129
           +E +D    L +   VL  CA    L  G+E+H + +R   C     D+ + +ALVD+YA
Sbjct: 197 IESVDMARDLRAVPNVLNVCANEGQLMKGREIHGRMVR---CFAFDSDIAVGNALVDMYA 253

Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
           KCG VD A  +F  M VRN+++W+++IS +  +G G+EALRI+++M   G KP+ ++FI 
Sbjct: 254 KCGQVDGAQAVFASMKVRNVMSWSTLISCYGVHGMGKEALRIYEEMVSRGVKPNCITFIS 313

Query: 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
           +LS+CSH GL+  GR+ F SM+K + ++P  +HY CMVDLLGRAG +EEA  +I      
Sbjct: 314 ILSSCSHSGLVSDGRRIFESMSKVHAVEPTADHYACMVDLLGRAGAIEEAVGIIRKMPME 373

Query: 250 HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309
             +SLW  LL AC T  N  V E  A K+ EL+     +YV L  +Y A+GR +    IR
Sbjct: 374 PGASLWGALLSACATHNNVDVGEVAAYKLFELEEGNASNYVTLCGIYDAIGRSDSVSGIR 433

Query: 310 TLMKYSGVKKMPGKSWIEANSK 331
           + M+  G+ K PG SW+    +
Sbjct: 434 SRMRELGMVKTPGCSWVHVKGR 455



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 142/288 (49%), Gaps = 5/288 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G +VHA+ +  GL  N  +++  V +Y +CG +  + +VFD M   +  + + LL  
Sbjct: 22  LSPGAQVHAQGLVGGLLPNTTLDTDFVLLYSRCGALHRARQVFDGMSFPSMHAYNVLLAA 81

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
                  E + R+       D +S   VLRACA L  + LG   H   +R     +V++ 
Sbjct: 82  SPPGTAVELISRLLASGLRPDRYSIPAVLRACAELRDMLLGAVFHGLALRLGLLANVVVS 141

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF--DDMTEGG 179
            AL+D+YAK G +  A ++F +MP R+ + WN M++G+A+ GR EE L +F    +    
Sbjct: 142 GALLDMYAKTGMLADATRVFDEMPERDAVVWNCMVTGYARAGRSEETLELFRKAQIESVD 201

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
              D  +   VL+ C++ G + +GR+    M + +     I   N +VD+  + G ++ A
Sbjct: 202 MARDLRAVPNVLNVCANEGQLMKGREIHGRMVRCFAFDSDIAVGNALVDMYAKCGQVDGA 261

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDC 285
           + +  +   R+  S W  L+           A R+ ++++   +KP+C
Sbjct: 262 QAVFASMKVRNVMS-WSTLISCYGVHGMGKEALRIYEEMVSRGVKPNC 308



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 6/174 (3%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             +++R CA   AL  G +VH Q +      +  +++  V LY++CG +  A Q+F  M 
Sbjct: 9   LSVLIRRCAASGALSPGAQVHAQGLVGGLLPNTTLDTDFVLLYSRCGALHRARQVFDGMS 68

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             ++  +N +++          A+ +   +   G +PD  S   VL AC+ +  +  G  
Sbjct: 69  FPSMHAYNVLLAASPPG----TAVELISRLLASGLRPDRYSIPAVLRACAELRDMLLG-A 123

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            F  +     +   +     ++D+  + G+L +A  + +    R D+ +W  ++
Sbjct: 124 VFHGLALRLGLLANVVVSGALLDMYAKTGMLADATRVFDEMPER-DAVVWNCMV 176


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 206/331 (62%), Gaps = 4/331 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H+  +  G+  +  V  +L+DMY KCG ++++H VFD+M +K +V  ++++  Y  
Sbjct: 238 GKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYAL 297

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + ++ EM +    +D F+  IV+R CA LA+L   K+ H   +R     D++ 
Sbjct: 298 HGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVA 357

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVD Y+K G ++ A  +F +M  +N+I+WN++I+G+  +G+G+EA+ +F+ M + G 
Sbjct: 358 NTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGV 417

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P HV+F+ VLSACS+ GL  RG + F SM +++++KP+  HY CM++LLGR  LL+EA 
Sbjct: 418 TPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAY 477

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LI  A  +  +++W  LL AC   +N  + +  A+K+  ++P+   +Y++L N+Y + G
Sbjct: 478 ALIRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSG 537

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           +  +A  I   +K  G++ +P  SW+E   +
Sbjct: 538 KLKEAAGILQTLKKKGLRMLPACSWVEVKKQ 568



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 142/261 (54%), Gaps = 8/261 (3%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K V   +I  G   ++ V + ++ M+ KCGL+ ++ ++FD+M +K+  S   ++ G   T
Sbjct: 138 KRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDT 197

Query: 66  GDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G+F    R+F    +E  +    +F  ++RA AGL  +++GK++H   ++R    D  + 
Sbjct: 198 GNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVS 257

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
            AL+D+Y+KCG ++ AH +F QMP +  + WNS+I+ +A +G  EEAL ++ +M + GT 
Sbjct: 258 CALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTT 317

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            DH +   V+  C+ +  ++  ++  A++ + +     I     +VD   + G +E+A  
Sbjct: 318 VDHFTISIVIRICARLASLEHAKQAHAALVR-HGFATDIVANTALVDFYSKWGRMEDARH 376

Query: 242 LIENADCRHDSSL-WEVLLGA 261
           +      RH + + W  L+  
Sbjct: 377 VFNRM--RHKNVISWNALIAG 395



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  K+ HA ++  G   ++V  ++LVD Y K G ++++  VF++M  KN +S +AL+ G
Sbjct: 336 LEHAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAG 395

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  + +F +M +  +     +F  VL AC+     + G E+     R    K 
Sbjct: 396 YGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKP 455

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISG 158
             +  A +++L  +   +D A+ +    P +     W ++++ 
Sbjct: 456 RAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTA 498



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 26/217 (11%)

Query: 45  DKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF---------------SFGIV 89
           D  ++K S S      G C     E ++   R  E ++LF               ++  +
Sbjct: 73  DTQIRKTSPS------GLCS--QIEKLVVCNRHREAMELFEILELEHDGYGVGASTYDAL 124

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           + AC GL ++R  K V    I      D+ + + ++ ++ KCG +  A ++F +MP +++
Sbjct: 125 VSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKDV 184

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
            +W +M+ G    G   EA R+F  M +        +F  ++ A + +GL+  G++  + 
Sbjct: 185 ASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQIHSC 244

Query: 210 MTKEYRIKPKIEHYNC-MVDLLGRAGLLEEAETLIEN 245
             K  R        +C ++D+  + G +E+A  + + 
Sbjct: 245 ALK--RGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQ 279


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/316 (37%), Positives = 202/316 (63%), Gaps = 5/316 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N    +++V  Y +CG +D++  +FD+M +++ +S +A++ GY Q+G  E  + +F +M+
Sbjct: 338 NTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMK 397

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                ++  +    L +CA +AAL LGK++H + ++       I  +AL+ +Y KCG ++
Sbjct: 398 RDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIE 457

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A  +F  +  +++++WN+MI+G+A++G G+EAL +F+ M +   KPD V+ +GVLSACS
Sbjct: 458 EAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACS 516

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H G +D+G ++F SM + Y I    +HY CM+DLLGRAG L+EA  L+++     D++ W
Sbjct: 517 HTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATW 576

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGA     +  + E+ A+K+ E++PD    YVLL N+Y A GRW +  ++R+ M+  
Sbjct: 577 GALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDK 636

Query: 316 GVKKMPGKSWIEANSK 331
           GVKK+PG SW+E  +K
Sbjct: 637 GVKKVPGYSWVEIQNK 652



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 120/240 (50%), Gaps = 14/240 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  + + G V+E+ ++FD+ML KN +S + LL  Y Q G  E   R+F    
Sbjct: 152 DVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKM 211

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           + ++ S+  ++        L   + +      R   +D I  + ++  YA+ G +  A +
Sbjct: 212 DWEIVSWNCLMGGYVRKKRLDDARSL----FDRMPVRDKISWNIMITGYAQNGLLSEARR 267

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F ++P+R++  W +M+SGF QNG  +EA RIF++M E     + VS+  +++       
Sbjct: 268 LFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYVQSQQ 323

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           I++ R+ F  M            +N MV    + G +++A+ L +    R D   W  ++
Sbjct: 324 IEKARELFDQMPSR-----NTSSWNTMVTGYAQCGNIDQAKILFDEMPQR-DCISWAAMI 377



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 18/265 (6%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           ++V  +  +  Y + G  + +  VF+ M ++++V+ +A++ GY     F+   ++F +M 
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP 118

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           + DL S+ ++L        L   + +  Q       KDV+  +A++  +A+ G V+ A +
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPE----KDVVSWNAMLSGFAQNGFVEEARK 174

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           IF QM V+N I+WN ++S + QNGR E+A R+FD   +     + VS+  ++        
Sbjct: 175 IFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDW----EIVSWNCLMGGYVRKKR 230

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +D  R  F  M     ++ KI  +N M+    + GLL EA  L E    R D   W  ++
Sbjct: 231 LDDARSLFDRMP----VRDKIS-WNIMITGYAQNGLLSEARRLFEELPIR-DVFAWTAMV 284

Query: 260 GACTTFRNAHVAERVAKKIMELKPD 284
                 +N  + E  A +I E  P+
Sbjct: 285 SGFV--QNGMLDE--ATRIFEEMPE 305



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 142/335 (42%), Gaps = 65/335 (19%)

Query: 11  KVITLGLCGNVVVESSLVDMYGKCGLVDESHR---------------------------- 42
           K+    L  N +  + L+  Y + G ++++ R                            
Sbjct: 174 KIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDD 233

Query: 43  ---VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACA--GL- 96
              +FD+M  ++ +S + ++ GY Q G      R+F E+   D+F++  ++      G+ 
Sbjct: 234 ARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGML 293

Query: 97  -AALRLGKE----------------VHCQYIRRS-------GCKDVIIESALVDLYAKCG 132
             A R+ +E                V  Q I ++         ++    + +V  YA+CG
Sbjct: 294 DEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCG 353

Query: 133 CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
            +D A  +F +MP R+ I+W +MISG+AQ+G+ EEAL +F  M   G   +  +    LS
Sbjct: 354 NIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALS 413

Query: 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           +C+ +  ++ G++    + K       I   N ++ + G+ G +EEA  + E+     D 
Sbjct: 414 SCAEIAALELGKQLHGRLVKAGFQTGYIAG-NALLAMYGKCGSIEEAFDVFEDI-TEKDI 471

Query: 253 SLWEVLLGACTTFRNAHVAERVA---KKIMELKPD 284
             W  ++      R+    E +A      M +KPD
Sbjct: 472 VSWNTMIAGYA--RHGFGKEALALFESMKMTIKPD 504



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 95/196 (48%), Gaps = 7/196 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H +++  G     +  ++L+ MYGKCG ++E+  VF+ + +K+ VS + ++ G
Sbjct: 421 LELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAG 480

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKD 117
           Y + G  +  + +F  M+   + D  +   VL AC+    +  G E      +  G   +
Sbjct: 481 YARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITAN 540

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDDMT 176
               + ++DL  + G +D A  +   MP   +  TW +++     +G  E   +  + + 
Sbjct: 541 AKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVF 600

Query: 177 EGGTKPDHVSFIGVLS 192
           E   +PD+     +LS
Sbjct: 601 E--MEPDNSGMYVLLS 614


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  250 bits (639), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 128/317 (40%), Positives = 194/317 (61%), Gaps = 7/317 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
            V+  +S+V  Y  CG +DE+  +F++   ++ V  +A++ GY Q   F+  + +FREM+
Sbjct: 298 TVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQ 357

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 D F+   +L  CA L  L  GK +H          D ++ +AL+++YAKCG ++
Sbjct: 358 IKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIE 417

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            + +IF  +  ++  +W S+I G A NG+  +AL +F +M + G KPD ++FIGVLSACS
Sbjct: 418 KSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACS 477

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS--- 252
           H GL++ GRKHF SMT  Y+I+PK+EHY C++DLLGRAG L+EAE LIE +   ++    
Sbjct: 478 HGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIV 537

Query: 253 SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312
            L+  LL AC T  N  + ERVAK+++ ++      + LL N+Y +  RW D  K+R  M
Sbjct: 538 PLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKM 597

Query: 313 KYSGVKKMPGKSWIEAN 329
           K  GVKK+PG S +E N
Sbjct: 598 KDLGVKKVPGCSSVEVN 614



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 152/320 (47%), Gaps = 39/320 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G++V+  V+  GL  +  V +SL+DMY + G V    +VF++M +++ VS + L+ G
Sbjct: 148 VREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISG 207

Query: 62  YCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y +   +E  + +FR M++         +    L AC  L  L LGKE+H +Y+R     
Sbjct: 208 YVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIH-RYVREQLGF 266

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS------------------- 157
            + I +ALVD+Y KCG +  A +IF  MP++ +I W SM+S                   
Sbjct: 267 TIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSP 326

Query: 158 ------------GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
                       G+ Q  R ++A+ +F +M      PD  + + +L+ C+ +G +++G K
Sbjct: 327 VRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQG-K 385

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
                  E +I         ++++  + G +E++  +      +  +S   ++ G     
Sbjct: 386 WIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNG 445

Query: 266 RNAHVAERVAKKIME-LKPD 284
           + +   E  A+ +   +KPD
Sbjct: 446 KTSKALELFAEMVQTGVKPD 465



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 116/212 (54%), Gaps = 9/212 (4%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAG 95
           + R+F+ +        + +++ + + G F   + +FR++ E     D F++  V +A   
Sbjct: 85  AERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGC 144

Query: 96  LAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS 154
           L  +R G++V+  ++ +SG + D  + ++L+D+YA+ G V    Q+F +MP R++++WN 
Sbjct: 145 LGEVREGEKVY-GFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNV 203

Query: 155 MISGFAQNGRGEEALRIFDDMTEGGT-KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           +ISG+ +  R E+A+ +F  M +  + +P+  + +  LSAC  + +++ G++    + ++
Sbjct: 204 LISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQ 263

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
                KI   N +VD+  + G L  A  +  +
Sbjct: 264 LGFTIKIG--NALVDMYCKCGHLSIAREIFND 293



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 79/153 (51%), Gaps = 7/153 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK +H  +    +  + VV ++L++MY KCG +++S  +F+ + +K++ S ++++ G
Sbjct: 381 LEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICG 440

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F EM +     D  +F  VL AC+    +  G++ H + +      +
Sbjct: 441 LAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRK-HFRSMTAVYQIE 499

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVRN 148
             +E    L+DL  + G +D A ++  + P  N
Sbjct: 500 PKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVN 532


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  250 bits (639), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 122/329 (37%), Positives = 197/329 (59%), Gaps = 2/329 (0%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H   +      N+ V +SL+DMY  C  + ++ R+FD++ ++N V+ + ++  Y Q
Sbjct: 195 GQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNLVTWNTMIAWYSQ 254

Query: 65  TGDFESVIRIFREME-EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
                + +++ REM  + + F+   +  ACAGLA+LR G++VH   +RR+  KD+ + +A
Sbjct: 255 CNHLMA-LQLLREMNLQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNA 313

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           LVD+Y+KCG +  A ++F  M  ++ ++W SMI+G+  NG   E++++F  M   G  PD
Sbjct: 314 LVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPD 373

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
           HV F+G++ AC+H GL+D G   F SMT EY ++P  E Y C+ +LL RAG L EA  LI
Sbjct: 374 HVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLI 433

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
                  D ++W  LLGAC   +N  +    A+KI+E+ PD   +YVLL N+Y A  +W 
Sbjct: 434 HRMPFAPDETVWGALLGACKMHKNVELGRLAARKIIEINPDRAKTYVLLANIYAAGNKWG 493

Query: 304 DAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +    R L++  G +K  G SWI+   K+
Sbjct: 494 EYADTRRLLRGIGSRKEAGTSWIDVTDKI 522



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 145/266 (54%), Gaps = 15/266 (5%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKC--GL-VDESHRVFDKMLK-KNSVSSSALL 59
           +   +HA  +  G+     V ++L++ Y  C  G+ V+ES ++FD +   + + S ++++
Sbjct: 89  EPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGVEESRKLFDALGSGRTAASWTSMV 148

Query: 60  QGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY + G  ++ +++F+ M     E+  F+  I L ACA +A L +G+++H   +R++  
Sbjct: 149 AGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHACASIANLCVGQQLHVLCLRKAFN 208

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            ++ + ++L+D+Y  C  +  A ++F ++P RNL+TWN+MI+ ++Q      AL++  +M
Sbjct: 209 ANLTVANSLIDMYCSCANLLDARRLFDEIPERNLVTWNTMIAWYSQCNH-LMALQLLREM 267

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
                +P+  +   + SAC+ +  +  G++ H A++ + Y     ++  N +VD+  + G
Sbjct: 268 N---LQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNY--GKDLQMCNALVDMYSKCG 322

Query: 235 LLEEAETLIENADCRHDSSLWEVLLG 260
            +  A+ +    D +   S   ++ G
Sbjct: 323 SIANAKKMFNMMDYKDKLSWTSMITG 348



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 118/262 (45%), Gaps = 16/262 (6%)

Query: 35  GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVL 90
           G +  +  VFD+M  ++ V+ +A+L GY   G     + +FR M    +    F+   VL
Sbjct: 17  GALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPNEFTLSSVL 76

Query: 91  RACAGLAALR--LGKEVHCQYIRRSGCKDVIIESALVDLYAKCG---CVDFAHQIFLQMP 145
            AC G AA        +H   +RR       + +AL++ YA C     V+ + ++F  + 
Sbjct: 77  TACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGVEESRKLFDALG 136

Query: 146 V-RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
             R   +W SM++G+++ G+ +  L++F  M + G +    +    L AC+ +  +  G+
Sbjct: 137 SGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHACASIANLCVGQ 196

Query: 205 K-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           + H   + K +     +   N ++D+      L +A  L +    R+  + W  ++   +
Sbjct: 197 QLHVLCLRKAFNANLTVA--NSLIDMYCSCANLLDARRLFDEIPERNLVT-WNTMIAWYS 253

Query: 264 TFRNAHVAERVAKKIMELKPDC 285
                H+      + M L+P+C
Sbjct: 254 QCN--HLMALQLLREMNLQPNC 273



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 44/77 (57%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VH   +      ++ + ++LVDMY KCG +  + ++F+ M  K+ +S ++++ G
Sbjct: 289 LRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITG 348

Query: 62  YCQTGDFESVIRIFREM 78
           Y   G     I++F  M
Sbjct: 349 YGMNGYANESIQLFTSM 365


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  250 bits (639), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 131/338 (38%), Positives = 208/338 (61%), Gaps = 8/338 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMY---GKCGLVDESHRVFDKMLKKNSVSSSAL 58
           L+ GK VH  V+  G   +V V ++L+ MY   G+ G  + + +VFD   K ++V+ SA+
Sbjct: 141 LRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGF-EFAEKVFDDSPKMDTVTWSAM 199

Query: 59  LQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           + G+ + G     + +FREM+ +    D  +   VL ACA L AL LGK V     +++ 
Sbjct: 200 IAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNI 259

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            K V + +AL+D++AKCG VD A ++F QM  R +++W S+I+G A +GRG +A+ +FD+
Sbjct: 260 PKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDE 319

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M E G  PD V+FIGVLSACSH GL+D+GR +F SM + + I PK+EHY CMVDLL R G
Sbjct: 320 MVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGG 379

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            ++EA   ++      +  +W  ++ AC       + E ++K++++ +P    +YVLL N
Sbjct: 380 FVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSN 439

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +Y  + +W    K+R +M   G+KK+PG + IE N+++
Sbjct: 440 IYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEM 477



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 16/274 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM--------YGKCGLVDESHRVFDKMLKKNSV 53
           L +  ++HA ++  GL  N ++ +             Y    L   SH         ++ 
Sbjct: 31  LSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDAF 90

Query: 54  SSSALLQGYCQTGDFESVIRIF-----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQ 108
             + L++ Y QT D +S   +F     R     + F+F  VL+ CAG+ +LRLGK VH  
Sbjct: 91  LFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGC 150

Query: 109 YIRRSGCKDVIIESALVDLYAKCG--CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
            ++    +DV + + L+ +Y   G    +FA ++F   P  + +TW++MI+GF + G   
Sbjct: 151 VVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSS 210

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
            A+ +F +M   G  PD ++ + VLSAC+ +G ++ G K   S  ++  I   +E  N +
Sbjct: 211 RAVDLFREMQVMGVCPDEITMVSVLSACADLGALELG-KWVESYVEKKNIPKSVELCNAL 269

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +D+  + G +++A  L    D R   S   V+ G
Sbjct: 270 IDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAG 303


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 130/329 (39%), Positives = 194/329 (58%), Gaps = 4/329 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG ++HA V  LG   +  + ++L+  Y  C  +++S RVF   L  N V  +AL+ G
Sbjct: 219 LYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTG 278

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y      E  +++F EM    +     SF   L +C GL AL  G+E+H   ++     D
Sbjct: 279 YGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETD 338

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + ++L+ +Y +CG ++    IF ++  +N+++WNS+I G AQ+G G  AL  F+ M  
Sbjct: 339 VFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVR 398

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +PD ++F G+LSACSH G+  +GR  F   ++    + K++HY CMVD+LGR+G LE
Sbjct: 399 SMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLE 458

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE LI N   + +S +W VLL ACT      VAER AK I++L+P C  +YVLL N+Y 
Sbjct: 459 EAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYA 518

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           +  RW+D  +IR  MK  G+ K PG+SWI
Sbjct: 519 SASRWSDVSRIRREMKQRGITKQPGRSWI 547



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 30  MYGKC--GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDL 83
           +YG C  G V++  R+F +M  +N +S ++++ G  Q G  E  + +FR+M     E+  
Sbjct: 142 IYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKP 201

Query: 84  FS--FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
            S  +  V+ ACA  +AL  G ++H    +     D  I +AL+  YA C  ++ + ++F
Sbjct: 202 TSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVF 261

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
                 N++ W ++++G+  N + E+AL++F +M   G  P+  SF   L++C  +  +D
Sbjct: 262 HGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALD 321

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            GR+   +  K   ++  +   N ++ +  R G L +   + +    ++  S   V++G
Sbjct: 322 WGREIHTAAVK-LGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVG 379



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 99/204 (48%), Gaps = 9/204 (4%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGL 96
           +DE+  VFDK+   +    + ++ GY +   F+  +++F EM   D+ S+  +++ C   
Sbjct: 27  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDC 86

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
           A L + +++  +   RS    V+  + +++ + + G ++ A  +F +MP R++  WNSMI
Sbjct: 87  ADLTMARKLFDEMPERS----VVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMI 142

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYR 215
            G+  NGR E+ LR+F +M       + +S+  ++      G  +     F  M      
Sbjct: 143 YGYCCNGRVEDGLRLFQEM----PCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 198

Query: 216 IKPKIEHYNCMVDLLGRAGLLEEA 239
           +KP    Y C++     A  L + 
Sbjct: 199 VKPTSSTYCCVITACANASALYQG 222


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 201/357 (56%), Gaps = 25/357 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSS----- 56
           L  G E+H+ ++  G+  N  V  SL+DMY KCG+++E+ ++  +  ++ +VS +     
Sbjct: 456 LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELE 515

Query: 57  ---------------ALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLA 97
                          +++ GY      E    +F  M E+    D F++  VL  CA LA
Sbjct: 516 KMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLA 575

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
           +  LGK++H Q I++    DV I S LVD+Y+KCG +  +  +F +   R+ +TWN+MI 
Sbjct: 576 SAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMIC 635

Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
           G+A +G+GEEA+++F+ M     KP+HV+FI +L AC+HMGLID+G ++F  M ++Y + 
Sbjct: 636 GYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLD 695

Query: 218 PKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR-NAHVAERVAK 276
           P++ HY+ MVD+LG++G ++ A  LI       D  +W  LLG CT  R N  VAE    
Sbjct: 696 PQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATA 755

Query: 277 KIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            ++ L P    +Y LL NVY   G W     +R  M+   +KK PG SW+E   +L+
Sbjct: 756 ALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELH 812



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 135/261 (51%), Gaps = 6/261 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H  V+ +G   +VV  S+L+DMY K     ES RVF  + +KNSVS SA++ G  Q
Sbjct: 157 GMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQ 216

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                  ++ F+EM++++       +  VLR+CA L+ LRLG ++H   ++     D I+
Sbjct: 217 NNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIV 276

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A +D+YAKC  +  A  +F      N  ++N+MI+G++Q   G +AL +F  +   G 
Sbjct: 277 RTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL 336

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D +S  GV  AC+ +  +  G + +    K   +   +   N  +D+ G+   L EA 
Sbjct: 337 GFDEISLSGVFRACALVKGLSEGLQIYGLAIKS-SLSLDVCVANAAIDMYGKCQALAEAF 395

Query: 241 TLIENADCRHDSSLWEVLLGA 261
            + +    R D+  W  ++ A
Sbjct: 396 RVFDEMR-RRDAVSWNAIIAA 415



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 127/246 (51%), Gaps = 8/246 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++HA  +      + +V ++ +DMY KC  + ++  +FD     N  S +A++ G
Sbjct: 255 LRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITG 314

Query: 62  YCQTGD-FESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    F++++   R M      D  S   V RACA +  L  G +++   I+ S   D
Sbjct: 315 YSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLD 374

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +A +D+Y KC  +  A ++F +M  R+ ++WN++I+   QNG+G E L +F  M  
Sbjct: 375 VCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLR 434

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC-MVDLLGRAGLL 236
              +PD  +F  +L AC+  G +  G +  +S+ K            C ++D+  + G++
Sbjct: 435 SRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNS--SVGCSLIDMYSKCGMI 491

Query: 237 EEAETL 242
           EEAE +
Sbjct: 492 EEAEKI 497



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 120/233 (51%), Gaps = 7/233 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF---- 75
           +VV  + +++ Y K   + +++  F+ M  ++ VS +++L GY Q G+    I +F    
Sbjct: 71  DVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG 130

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           RE  E D  +F I+L+ C+ L    LG ++H   +R     DV+  SAL+D+YAK     
Sbjct: 131 REGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFV 190

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            + ++F  +P +N ++W+++I+G  QN     AL+ F +M +         +  VL +C+
Sbjct: 191 ESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA 250

Query: 196 HMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
            +  +  G + H  ++  ++     +      +D+  +   +++A+ L +N++
Sbjct: 251 ALSELRLGGQLHAHALKSDFAADGIVR--TATLDMYAKCDNMQDAQILFDNSE 301



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 51/82 (62%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +DV+  + +++ Y+K   +  A+  F  MPVR++++WNSM+SG+ QNG   +++ +F DM
Sbjct: 70  RDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDM 129

Query: 176 TEGGTKPDHVSFIGVLSACSHM 197
              G + D  +F  +L  CS +
Sbjct: 130 GREGIEFDGRTFAIILKVCSFL 151


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 124/331 (37%), Positives = 202/331 (61%), Gaps = 4/331 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RLK G+++HA V+ +G    + V +S++ +Y KCG +    +VF  M  ++ ++ S ++ 
Sbjct: 333 RLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIA 392

Query: 61  GYCQTG----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y Q G     FE + R+  E  + + F+   VL  C  +A L  GK++H   +     +
Sbjct: 393 AYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQ 452

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             ++ SAL+ +YAKCG +  A +IF+     ++I+W +MISG+A++G  +EA+ +F+++ 
Sbjct: 453 TSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQ 512

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +PD V+FIGVL+ACSH G++D G  +F SM+K+Y I P  EHY CM+DLL RAG L
Sbjct: 513 KVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRL 572

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            +AETLI +   + D  +W  LL AC    +    +R A ++++L P+C  +++ L N++
Sbjct: 573 HDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIF 632

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            A G+W +A  IR LMK  GV K PG S ++
Sbjct: 633 AAKGKWKEAANIRMLMKSKGVVKEPGWSSVK 663



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 110/208 (52%), Gaps = 4/208 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H + +  G   N  V +SL  MY KCG +D     F KM   + VS + ++  
Sbjct: 233 LNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTA 292

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  ++ F+ M   ++    ++F  V+  CA  A L+ G+++H   +       
Sbjct: 293 YIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNA 352

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++++ LY+KCG +    ++F  M  R++ITW+++I+ ++Q G GEEA      M  
Sbjct: 353 LSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRS 412

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G KP+  +   VLS C  M ++++G++
Sbjct: 413 EGPKPNEFALASVLSVCGSMAILEQGKQ 440



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 111/205 (54%), Gaps = 4/205 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H   +  GL  +V V S+L+DMY K G +  S +VFD+M  +N+V+ +A++ G  +
Sbjct: 135 GTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVR 194

Query: 65  TGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E+ +  F    R   E D +++ I L+A A   AL  G+ +H Q +++   ++  +
Sbjct: 195 AGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFV 254

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L  +Y KCG +D+    F +M   ++++W ++++ + Q G+ +  L+ F  M     
Sbjct: 255 ANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNV 314

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK 205
            P+  +F  V+S C++   +  G +
Sbjct: 315 IPNEYTFSAVISCCANFARLKWGEQ 339



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 8/189 (4%)

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFG 87
           K   + ++  +FD++ +++ VS + ++ GY  + D    +R+F +M       ID F   
Sbjct: 61  KTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLS 120

Query: 88  IVLRACA-GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
           + L+ C  GL  L  G  +H   ++      V + SAL+D+Y K G +  + ++F +MP 
Sbjct: 121 LGLKTCGLGLNYL-YGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPT 179

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK- 205
           RN +TW ++I+G  + G  E  L  F  M     + D  ++   L A +  G ++ GR  
Sbjct: 180 RNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSI 239

Query: 206 HFASMTKEY 214
           H  ++ K +
Sbjct: 240 HTQTLKKGF 248


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 127/337 (37%), Positives = 208/337 (61%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-NSVSSSALLQ 60
           L QG ++H+ +I  G   ++ V +SL+ MY  C  +     +F+      +SVS + +L 
Sbjct: 387 LSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILT 446

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
              Q      ++R+F+ M     E D  + G +LR C  +++L+LG +VHC  ++     
Sbjct: 447 ACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAP 506

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  I++ L+D+YAKCG +  A +IF  M  R++++W+++I G+AQ+G GEEAL +F +M 
Sbjct: 507 EQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMK 566

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P+HV+F+GVL+ACSH+GL++ G K +A+M  E+ I P  EH +C+VDLL RAG L
Sbjct: 567 SAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRL 626

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE  I+      D  +W+ LL AC T  N H+A++ A+ I+++ P    ++VLL +++
Sbjct: 627 NEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMH 686

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            + G W +A  +R+ MK   VKK+PG+SWIE   K++
Sbjct: 687 ASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIH 723



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 148/279 (53%), Gaps = 9/279 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+++H  ++      + ++ + ++ MYGKCG + ++  VFD M ++N VS ++++ G
Sbjct: 83  LAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITG 142

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     IR++ +M + DL    F+FG +++ACA  + + LGK++H Q I+      
Sbjct: 143 YSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSH 202

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +I ++AL+ +Y +   +  A ++F  +P+++LI+W+S+I+GF+Q G   EAL    +M  
Sbjct: 203 LIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLS 262

Query: 178 GGT-KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G   P+   F   L ACS +   D G +      K       I   + + D+  R G L
Sbjct: 263 FGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCS-LCDMYARCGFL 321

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA 275
             A  + +  + R D++ W V++       N +  E V+
Sbjct: 322 NSARRVFDQIE-RPDTASWNVIIAGLAN--NGYADEAVS 357



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 148/299 (49%), Gaps = 10/299 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA+VI L    +++ +++L+ MY +   + ++ RVF  +  K+ +S S+++ G+ Q
Sbjct: 187 GKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQ 246

Query: 65  TG-DFESVIRIFREMEEIDLFS-----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            G +FE++  + +EM    +F      FG  L+AC+ L     G ++H   I+     + 
Sbjct: 247 LGFEFEALSHL-KEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNA 305

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           I   +L D+YA+CG ++ A ++F Q+   +  +WN +I+G A NG  +EA+ +F  M   
Sbjct: 306 IAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSS 365

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  PD +S   +L A +    + +G +  + + K +     +   N ++ +      L  
Sbjct: 366 GFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIK-WGFLADLTVCNSLLTMYTFCSDLYC 424

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
              L E+     DS  W  +L AC          R+ K  + L  +C   ++ + N+ R
Sbjct: 425 CFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFK--LMLVSECEPDHITMGNLLR 481



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 80/136 (58%), Gaps = 9/136 (6%)

Query: 85  SFGIVLR-------ACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDF 136
           SF I LR       AC+   +L  G+++H  +I  S CK D I+ + ++ +Y KCG +  
Sbjct: 62  SFKIRLRTYISLICACSSSRSLAQGRKIH-DHILNSNCKYDTILNNHILSMYGKCGSLRD 120

Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
           A ++F  MP RNL+++ S+I+G++QNG+G EA+R++  M +    PD  +F  ++ AC+ 
Sbjct: 121 AREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACAS 180

Query: 197 MGLIDRGRKHFASMTK 212
              +  G++  A + K
Sbjct: 181 SSDVGLGKQLHAQVIK 196


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 130/329 (39%), Positives = 194/329 (58%), Gaps = 4/329 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG ++HA V  LG   +  + ++L+  Y  C  +++S RVF   L  N V  +AL+ G
Sbjct: 203 LYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTG 262

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y      E  +++F EM    +     SF   L +C GL AL  G+E+H   ++     D
Sbjct: 263 YGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETD 322

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + ++L+ +Y +CG ++    IF ++  +N+++WNS+I G AQ+G G  AL  F+ M  
Sbjct: 323 VFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVR 382

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +PD ++F G+LSACSH G+  +GR  F   ++    + K++HY CMVD+LGR+G LE
Sbjct: 383 SMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLE 442

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE LI N   + +S +W VLL ACT      VAER AK I++L+P C  +YVLL N+Y 
Sbjct: 443 EAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYA 502

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           +  RW+D  +IR  MK  G+ K PG+SWI
Sbjct: 503 SASRWSDVSRIRREMKQRGITKQPGRSWI 531



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 30  MYGKC--GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDL 83
           +YG C  G V++  R+F +M  +N +S ++++ G  Q G  E  + +FR+M     E+  
Sbjct: 126 IYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKP 185

Query: 84  FS--FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
            S  +  V+ ACA  +AL  G ++H    +     D  I +AL+  YA C  ++ + ++F
Sbjct: 186 TSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVF 245

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
                 N++ W ++++G+  N + E+AL++F +M   G  P+  SF   L++C  +  +D
Sbjct: 246 HGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALD 305

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
            GR+   +  K   ++  +   N ++ +  R G L +   + +    ++  S   V++G
Sbjct: 306 WGREIHTAAVK-LGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVG 363



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 98/204 (48%), Gaps = 9/204 (4%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGL 96
           +DE+  VFDK+   +    + ++ GY +   F+  +++F EM   D+ S+  +++ C   
Sbjct: 11  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDC 70

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
           A L + +++  +   RS    V+  + +++ + + G ++ A  +F +MP R++  WNSMI
Sbjct: 71  ADLTMARKLFDEMPERS----VVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMI 126

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYR 215
            G+  NGR E+ LR+F +M         +S+  ++      G  +     F  M      
Sbjct: 127 YGYCCNGRVEDGLRLFQEMPCRNV----ISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 182

Query: 216 IKPKIEHYNCMVDLLGRAGLLEEA 239
           +KP    Y C++     A  L + 
Sbjct: 183 VKPTSSTYCCVITACANASALYQG 206


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 132/322 (40%), Positives = 194/322 (60%), Gaps = 13/322 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           +V+  +++++ Y   G V    R+F++M ++N  S +AL+ GY + G F  V+  F+ M 
Sbjct: 178 DVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRML 237

Query: 79  -------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAK 130
                   +  L +   VL ACA L AL LGK VH  Y    G K +V + +AL+D+YAK
Sbjct: 238 VDGTVVPNDATLVN---VLSACARLGALDLGKWVHV-YAESHGYKGNVYVRNALMDMYAK 293

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
           CG V+ A  +F  M  ++LI+WN++I G A +G G +AL +F  M   G  PD ++FIG+
Sbjct: 294 CGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGI 353

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
           L AC+HMGL++ G  +F SMT +Y I P+IEHY C+VDLLGRAGLL  A   I       
Sbjct: 354 LCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEA 413

Query: 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310
           D+ +W  LLGAC  ++N  +AE   +K++E +P    +YV+L N+Y   GRW D  +++ 
Sbjct: 414 DAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKV 473

Query: 311 LMKYSGVKKMPGKSWIEANSKL 332
            M+ +G KK+PG S IE N  L
Sbjct: 474 AMRDTGFKKLPGCSLIEVNDYL 495



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 138/262 (52%), Gaps = 9/262 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+G+EVH  VI  G   N  V ++L+DMY   G +  ++RVF +M+++N ++ +A++ G
Sbjct: 67  LKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMING 126

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           Y    D  +  R+F    E D+  +  ++        +   +E+      +   KDV+  
Sbjct: 127 YITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRAREL----FDKMPNKDVMSW 182

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGT 180
           + +++ YA  G V    ++F +MP RN+ +WN++I G+ +NG   E L  F  M  +G  
Sbjct: 183 NTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTV 242

Query: 181 KPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            P+  + + VLSAC+ +G +D G+  H  + +  Y  K  +   N ++D+  + G++E A
Sbjct: 243 VPNDATLVNVLSACARLGALDLGKWVHVYAESHGY--KGNVYVRNALMDMYAKCGVVETA 300

Query: 240 ETLIENADCRHDSSLWEVLLGA 261
             + ++ D + D   W  ++G 
Sbjct: 301 LDVFKSMDNK-DLISWNTIIGG 321



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 124/240 (51%), Gaps = 16/240 (6%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRA 92
           ++ +H+VFD++ + N+   +A+ +GY Q    + VI +FR+M+ +D+    F+F ++L++
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
           C  + AL+ G+EVHC  I+     +  + + L+D+YA  G +  A+++F +M  RN+I W
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            +MI+G+        A R+FD   E     D V +  ++S       + R R+ F  M  
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPE----RDIVLWNTMISGYIEAKDVIRARELFDKMPN 176

Query: 213 EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
           +      +  +N +++     G +   E L E    R+  S W  L+G  T  RN   +E
Sbjct: 177 K-----DVMSWNTVLNGYASNGDVMACERLFEEMPERNVFS-WNALIGGYT--RNGCFSE 228



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 22/171 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH    + G  GNV V ++L+DMY KCG+V+ +  VF  M  K+ +S + ++ G
Sbjct: 262 LDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGG 321

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLG----KEVHCQY---- 109
               G     + +F  M    E  D  +F  +L AC  +  +  G    K +   Y    
Sbjct: 322 LAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVP 381

Query: 110 -IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            I   GC        +VDL  + G +  A     +MP+  + + W +++  
Sbjct: 382 RIEHYGC--------IVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGA 424


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 124/331 (37%), Positives = 202/331 (61%), Gaps = 4/331 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RLK G+++HA V+ +G    + V +S++ +Y KCG +    +VF  M  ++ ++ S ++ 
Sbjct: 333 RLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIA 392

Query: 61  GYCQTG----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y Q G     FE + R+  E  + + F+   VL  C  +A L  GK++H   +     +
Sbjct: 393 AYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQ 452

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             ++ SAL+ +YAKCG +  A +IF+     ++I+W +MISG+A++G  +EA+ +F+++ 
Sbjct: 453 TSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQ 512

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +PD V+FIGVL+ACSH G++D G  +F SM+K+Y I P  EHY CM+DLL RAG L
Sbjct: 513 KVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRL 572

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            +AETLI +   + D  +W  LL AC    +    +R A ++++L P+C  +++ L N++
Sbjct: 573 HDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIF 632

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            A G+W +A  IR LMK  GV K PG S ++
Sbjct: 633 AAKGKWKEAANIRMLMKSKGVVKEPGWSSVK 663



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 110/208 (52%), Gaps = 4/208 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H + +  G   N  V +SL  MY KCG +D     F KM   + VS + ++  
Sbjct: 233 LNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTA 292

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  ++ F+ M   ++    ++F  V+  CA  A L+ G+++H   +       
Sbjct: 293 YIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNA 352

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++++ LY+KCG +    ++F  M  R++ITW+++I+ ++Q G GEEA      M  
Sbjct: 353 LSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRS 412

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G KP+  +   VLS C  M ++++G++
Sbjct: 413 EGPKPNEFALASVLSVCGSMAILEQGKQ 440



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 111/205 (54%), Gaps = 4/205 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H   +  GL  +V V S+L+DMY K G +  S +VFD+M  +N+V+ +A++ G  +
Sbjct: 135 GTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVR 194

Query: 65  TGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E+ +  F    R   E D +++ I L+A A   AL  G+ +H Q +++   ++  +
Sbjct: 195 AGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFV 254

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L  +Y KCG +D+    F +M   ++++W ++++ + Q G+ +  L+ F  M     
Sbjct: 255 ANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNV 314

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK 205
            P+  +F  V+S C++   +  G +
Sbjct: 315 IPNEYTFSAVISCCANFARLKWGEQ 339



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 8/189 (4%)

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFG 87
           K   + ++  +FD++ +++ VS + ++ GY  + D    +R+F +M       ID F   
Sbjct: 61  KTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLS 120

Query: 88  IVLRACA-GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
           + L+ C  GL  L  G  +H   ++      V + SAL+D+Y K G +  + ++F +MP 
Sbjct: 121 LGLKTCGLGLNYL-YGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPT 179

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK- 205
           RN +TW ++I+G  + G  E  L  F  M     + D  ++   L A +  G ++ GR  
Sbjct: 180 RNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSI 239

Query: 206 HFASMTKEY 214
           H  ++ K +
Sbjct: 240 HTQTLKKGF 248


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  250 bits (639), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 136/336 (40%), Positives = 207/336 (61%), Gaps = 8/336 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K GK++HA  I   L  ++ V ++L+D+Y KCG +  +  +FD+  +K+ VS + L+ G
Sbjct: 431 VKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDRS-EKDDVSYNTLIVG 489

Query: 62  YCQTGD-FESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q+   FES + +F++M     E D  SF   L ACA L+A + GKE+H   +RR    
Sbjct: 490 YSQSQCCFES-LHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNT 548

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + ++L+DLY K G +  A +IF ++  +++ +WN+MI G+  +G+ + A  +FD M 
Sbjct: 549 HPFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGMHGQIDVAFELFDLMK 608

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G   DHVS+I VLSACSH GL+DRG+K+F+ M  +  IKP+  HY CMVDLLGRAG L
Sbjct: 609 DDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQ-NIKPQQMHYACMVDLLGRAGQL 667

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            E+  +I N     +S +W  LLG+C    +  +A   A+ + ELKP+    Y LL N+Y
Sbjct: 668 SESVEIITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHLFELKPEHSGYYTLLRNMY 727

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
              G WN+A +I+TLMK   V+K P  SW+++ +KL
Sbjct: 728 SESGMWNEANEIKTLMKSRKVQKNPAYSWVQSGNKL 763



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 155/284 (54%), Gaps = 11/284 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  VH  V+  GL   V + ++LVDMYGK G ++ S RVF+ M +KN VS ++ L  +  
Sbjct: 232 GLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAH 291

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E V+ +FR M E ++     +   +L A   L    LGKEVH   IRR+   D+ I
Sbjct: 292 AGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFI 351

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L+D+YAK GC++ A  IF  +  RN+++WN+MI+  AQNG   EA  +  +M + G 
Sbjct: 352 ANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGE 411

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            P+  + + +L ACS +  +  G++ H  S+ +   +   +   N ++D+  + G L  A
Sbjct: 412 CPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRS--LMSDLFVSNALIDVYAKCGQLSVA 469

Query: 240 ETLIENADCRHDSSLWEVLLGACTT---FRNAHVAERVAKKIME 280
           + + + ++ + D S   +++G   +   F + H+ +++    +E
Sbjct: 470 QDIFDRSE-KDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIE 512



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 144/301 (47%), Gaps = 20/301 (6%)

Query: 4   QGKEVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +G E+HA  +  GL   +V   ++LV  Y   G   ++ RVFD+M  ++ VS ++L+   
Sbjct: 129 KGAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSAL 188

Query: 63  CQTGDFE----SVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G  E    +V+ + R    +++ S   V+ AC        G  VH   + +SG   V
Sbjct: 189 LTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVH-GLVLKSGLDSV 247

Query: 119 I-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALVD+Y K G ++ + ++F  M  +N ++WNS +  FA  G  E+ L +F  M+E
Sbjct: 248 VNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSE 307

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRA 233
               P  V+   +L A     L+D G  H       Y I+  +E      N ++D+  + 
Sbjct: 308 HEVTPGSVTLSSLLPA-----LVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKF 362

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI-MELKPDCHLSYVLL 292
           G LE+A  + EN + R+  S W  ++      +N    E  +  I M+   +C  S+ L+
Sbjct: 363 GCLEKASAIFENIEGRNVVS-WNAMIANLA--QNGAETEAFSLVIEMQKNGECPNSFTLV 419

Query: 293 D 293
           +
Sbjct: 420 N 420



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVR--NLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  AL+  YA    +  A  I    P+R  +   WNS+    A  G   EALR+++ M  
Sbjct: 40  LAGALLLSYAALRDIPSARLILRHHPLRLRSAFLWNSLSRALASAGLPSEALRVYNCMVR 99

Query: 178 GGTKPDHVSF 187
            G +PD  +F
Sbjct: 100 SGVRPDDRTF 109


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  250 bits (639), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 201/357 (56%), Gaps = 25/357 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSS----- 56
           L  G E+H+ ++  G+  N  V  SL+DMY KCG+++E+ ++  +  ++ +VS +     
Sbjct: 498 LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELE 557

Query: 57  ---------------ALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLA 97
                          +++ GY      E    +F  M E+    D F++  VL  CA LA
Sbjct: 558 KMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLA 617

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
           +  LGK++H Q I++    DV I S LVD+Y+KCG +  +  +F +   R+ +TWN+MI 
Sbjct: 618 SAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMIC 677

Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
           G+A +G+GEEA+++F+ M     KP+HV+FI +L AC+HMGLID+G ++F  M ++Y + 
Sbjct: 678 GYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLD 737

Query: 218 PKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR-NAHVAERVAK 276
           P++ HY+ MVD+LG++G ++ A  LI       D  +W  LLG CT  R N  VAE    
Sbjct: 738 PQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATA 797

Query: 277 KIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            ++ L P    +Y LL NVY   G W     +R  M+   +KK PG SW+E   +L+
Sbjct: 798 ALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELH 854



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 135/261 (51%), Gaps = 6/261 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H  V+ +G   +VV  S+L+DMY K     ES RVF  + +KNSVS SA++ G  Q
Sbjct: 199 GMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQ 258

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                  ++ F+EM++++       +  VLR+CA L+ LRLG ++H   ++     D I+
Sbjct: 259 NNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIV 318

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A +D+YAKC  +  A  +F      N  ++N+MI+G++Q   G +AL +F  +   G 
Sbjct: 319 RTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL 378

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D +S  GV  AC+ +  +  G + +    K   +   +   N  +D+ G+   L EA 
Sbjct: 379 GFDEISLSGVFRACALVKGLSEGLQIYGLAIKS-SLSLDVCVANAAIDMYGKCQALAEAF 437

Query: 241 TLIENADCRHDSSLWEVLLGA 261
            + +    R D+  W  ++ A
Sbjct: 438 RVFDEMR-RRDAVSWNAIIAA 457



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 127/246 (51%), Gaps = 8/246 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++HA  +      + +V ++ +DMY KC  + ++  +FD     N  S +A++ G
Sbjct: 297 LRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITG 356

Query: 62  YCQTGD-FESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    F++++   R M      D  S   V RACA +  L  G +++   I+ S   D
Sbjct: 357 YSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLD 416

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +A +D+Y KC  +  A ++F +M  R+ ++WN++I+   QNG+G E L +F  M  
Sbjct: 417 VCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLR 476

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC-MVDLLGRAGLL 236
              +PD  +F  +L AC+  G +  G +  +S+ K            C ++D+  + G++
Sbjct: 477 SRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNS--SVGCSLIDMYSKCGMI 533

Query: 237 EEAETL 242
           EEAE +
Sbjct: 534 EEAEKI 539



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 120/233 (51%), Gaps = 7/233 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF---- 75
           +VV  + +++ Y K   + +++  F+ M  ++ VS +++L GY Q G+    I +F    
Sbjct: 113 DVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG 172

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           RE  E D  +F I+L+ C+ L    LG ++H   +R     DV+  SAL+D+YAK     
Sbjct: 173 REGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFV 232

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            + ++F  +P +N ++W+++I+G  QN     AL+ F +M +         +  VL +C+
Sbjct: 233 ESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA 292

Query: 196 HMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
            +  +  G + H  ++  ++     +      +D+  +   +++A+ L +N++
Sbjct: 293 ALSELRLGGQLHAHALKSDFAADGIVR--TATLDMYAKCDNMQDAQILFDNSE 343



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 31/167 (18%)

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYI----------- 110
           Y +   F        ++  +   +F  V + CA   AL LGK+ H   I           
Sbjct: 27  YRRVPSFSYFTDFLNQVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVL 86

Query: 111 --------------------RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
                                +   +DV+  + +++ Y+K   +  A+  F  MPVR+++
Sbjct: 87  NCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVV 146

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
           +WNSM+SG+ QNG   +++ +F DM   G + D  +F  +L  CS +
Sbjct: 147 SWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFL 193


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  250 bits (638), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 130/332 (39%), Positives = 196/332 (59%), Gaps = 4/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +   +   G  GNV V +SLVDMY KCG ++E+ RVFD M++K+ V  SAL+QG
Sbjct: 219 LASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQG 278

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  + +F EM+      D ++   V  AC+ L AL LG              +
Sbjct: 279 YASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSN 338

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ +AL+D YAKCG V  A ++F  M  ++ + +N++ISG A  G    A  +F  M +
Sbjct: 339 PVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVK 398

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD  +F+G+L  C+H GL+D G ++F+ M+  + + P IEHY CMVDL  RAGLL 
Sbjct: 399 VGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLV 458

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+ LI +     +S +W  LLG C   ++  +AE V K+++EL+P     YVLL N+Y 
Sbjct: 459 EAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYS 518

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           A  RW++A KIR+ +   G++K+PG SW+E +
Sbjct: 519 ASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVD 550



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 142/246 (57%), Gaps = 9/246 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H+ VI  G   +V V++ LV +Y K G + ++ +VFD++ +KN VS +A++ GY +
Sbjct: 121 GLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIE 180

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVI 119
           +G F   + +FR + E+    D F+   +L AC+ +  L  G+ +   Y+R SG   +V 
Sbjct: 181 SGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWID-GYMRESGSVGNVF 239

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++LVD+YAKCG ++ A ++F  M  ++++ W+++I G+A NG  +EAL +F +M    
Sbjct: 240 VATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQREN 299

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMT-KEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            +PD  + +GV SACS +G ++ G      M   E+   P +     ++D   + G + +
Sbjct: 300 VRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLG--TALIDFYAKCGSVAQ 357

Query: 239 AETLIE 244
           A+ + +
Sbjct: 358 AKEVFK 363



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 135/292 (46%), Gaps = 9/292 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L Q K+ H  ++ LGL  +  + + L+           +  VF +    N    + L++G
Sbjct: 16  LHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRG 75

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLA-ALRLGKEVHCQYIRRSGCK 116
                 F   + ++  M +     D F+F  VL+AC  L     +G  +H   I+     
Sbjct: 76  MVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDW 135

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV +++ LV LY+K G +  A ++F ++P +N+++W ++I G+ ++G   EAL +F  + 
Sbjct: 136 DVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLL 195

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E G +PD  + + +L ACS +G +  GR     M +   +   +     +VD+  + G +
Sbjct: 196 EMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVG-NVFVATSLVDMYAKCGSM 254

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCH 286
           EEA  + +      D   W  L+    +      A  V  ++    ++PDC+
Sbjct: 255 EEARRVFDGM-VEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCY 305



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 17/223 (7%)

Query: 95  GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS 154
           GL +L   K+ HC  +R    +D  + + L+          +A  +F Q P  N+  +N+
Sbjct: 12  GLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNT 71

Query: 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY 214
           +I G   N    +A+ ++  M + G  PD+ +F  VL AC+ +           S+  + 
Sbjct: 72  LIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKT 131

Query: 215 RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
                +     +V L  + G L +A  + +    ++  S W  ++  C    +    E +
Sbjct: 132 GFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVS-WTAII--CGYIESGCFGEAL 188

Query: 275 A--KKIME--LKPDCHLSYVLLDNVYR-------AVGRWNDAF 306
              + ++E  L+PD   S+ L+  +Y        A GRW D +
Sbjct: 189 GLFRGLLEMGLRPD---SFTLVRILYACSRVGDLASGRWIDGY 228


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  250 bits (638), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 133/335 (39%), Positives = 198/335 (59%), Gaps = 5/335 (1%)

Query: 3   KQGKEVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           K+GK  H   I       N  +++SLVDMY KCG +D + ++F+++  ++ V  SA++ G
Sbjct: 231 KEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAG 290

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + + G     I +FR+M       +  +F  ++ AC+ L +L+ G+ VH   IR     D
Sbjct: 291 FARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELD 350

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   ++ +D+YAKCGC+  A+++F Q+P +N+ +W++MI+GF  +G   EAL +F +M  
Sbjct: 351 VKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRS 410

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+ V+F+ VLSACSH G I+ G  HF SM+++Y I P  EHY CMVDLLGRAG ++
Sbjct: 411 VNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKID 470

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA + I N      +S W  LLGAC   R A +AE VAKK++ L+ D    YV+L N+Y 
Sbjct: 471 EALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYA 530

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            VG W    K R  M   G+ K+ G + IE   KL
Sbjct: 531 DVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKL 565



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 123/278 (44%), Gaps = 7/278 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L    +++A+++   L  +++    +   Y + G +  + + F+ +  +N  S + +L  
Sbjct: 28  LASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILAS 87

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + +   F  V+++F+ M +    +D F+    ++AC GL+  +  K  H   I+     D
Sbjct: 88  HSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGD 147

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +  AL+++Y + G ++ AH++F ++P++N + W  MI G            +F  M  
Sbjct: 148 PYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRR 207

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + D     G++ AC ++     G+       K+  I         +VD+  + G L+
Sbjct: 208 SGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLD 267

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA 275
            A  L E    R D  +W  ++      RN    E ++
Sbjct: 268 FALKLFEEISYR-DVVVWSAIIAGFA--RNGRALESIS 302



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 6/173 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LKQG+ VH  +I  G+  +V   +S +DMY KCG +  ++RVF ++ +KN  S S ++ G
Sbjct: 332 LKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMING 391

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     + +F EM  ++      +F  VL AC+    +  G        R  G   
Sbjct: 392 FGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITP 451

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEA 168
           V    A +VDL  + G +D A      MP       W +++     + R E A
Sbjct: 452 VEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELA 504


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  250 bits (638), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 196/357 (54%), Gaps = 45/357 (12%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+  G EVH  V     C N ++       Y +CG+++E+  +F +M  K+ VS + ++ 
Sbjct: 349 RIFDGMEVHDTV-----CWNTMISG-----YVQCGILEEAMLLFQRMPNKDMVSWNTMIA 398

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIV------------------------------- 89
           GY Q G     I IFR M   +  S+  V                               
Sbjct: 399 GYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWST 458

Query: 90  ----LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
               LRACA LA L +G+++H   +R     D    +AL+  YAKCG +  A QIF +M 
Sbjct: 459 YASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMV 518

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +++++WN++I G+A NG+G EA+ +F +M   G +PD V+F+G+LSACSH GLID G  
Sbjct: 519 YKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLF 578

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F SMTKEY +KP  EHY CMVDLLGRAG L EA  L++    + ++ +W  LLGAC   
Sbjct: 579 FFYSMTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACHMH 638

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
           +N  +A+  A+++ EL+P    +YVLL N+    G+W+++ K R  +K  GV K PG
Sbjct: 639 KNHELAQLAAERLSELEPRKASNYVLLSNISAEAGKWDESEKARASIKEKGVNKPPG 695



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 114/240 (47%), Gaps = 14/240 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  ++++    + G +DE+  +FD M  +N+VS +A++      G       +F  M 
Sbjct: 48  NTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMP 107

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
             D FS+ +++   A    L L ++V     R  G K     +A++  YAK G  D A +
Sbjct: 108 VRDEFSWTVMVSCYARGGDLELARDV---LDRMPGDKCTACYNAMISGYAKNGRFDDAMK 164

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +  +MP  +L++WNS ++G  Q+G    A++ FD+M +     D  S+  +L+     G 
Sbjct: 165 LLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMVK-----DMTSWNLMLAGFVRTGD 219

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           ++     FA +       P +  +  +++   RAG + +A  L +    R+  + W V+L
Sbjct: 220 LNAASSFFAKIE-----SPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVA-WNVML 273



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 5/225 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N +  ++++    + G + E+  + DKM      + +AL+ GY Q    +   RIF  ME
Sbjct: 296 NSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGME 355

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
             D   +  ++        L    E      +R   KD++  + ++  YA+ G +  A  
Sbjct: 356 VHDTVCWNTMISGYVQCGIL----EEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIG 411

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           IF +M  RN ++WNS+ISGF QN R  +AL  F  M  G  + D  ++   L AC+++ +
Sbjct: 412 IFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANLAV 471

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           +  GR+    + +   I       N ++    + G + EA+ + +
Sbjct: 472 LHVGRQLHNLLVRSGHINDSFAG-NALISTYAKCGRILEAKQIFD 515



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 107/238 (44%), Gaps = 15/238 (6%)

Query: 32  GKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLR 91
            + G +  + R+FD M  +N+V+ +A+L    + G  +    +F  M   +  S+  ++ 
Sbjct: 29  ARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIA 88

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
           A +    +   + +      R   +D    + +V  YA+ G ++ A  +  +MP      
Sbjct: 89  ALSDHGRVADARSL----FDRMPVRDEFSWTVMVSCYARGGDLELARDVLDRMPGDKCTA 144

Query: 152 -WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
            +N+MISG+A+NGR ++A+++  +M      PD VS+   L+  +  G + R  + F  M
Sbjct: 145 CYNAMISGYAKNGRFDDAMKLLREM----PAPDLVSWNSALAGLTQSGEMVRAVQFFDEM 200

Query: 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            K+      +  +N M+    R G L  A +     +  +  S   +L G C   R A
Sbjct: 201 VKD------MTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIA 252



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 93/188 (49%), Gaps = 11/188 (5%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF 84
           ++++  Y K G  D++ ++  +M   + VS ++ L G  Q+G+    ++ F EM + D+ 
Sbjct: 147 NAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMVK-DMT 205

Query: 85  SFGIVLRACAGLAALRLGK-EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           S+ ++L   AG   +R G       +  +    +VI    L++ Y + G +  A  +F +
Sbjct: 206 SWNLML---AGF--VRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDR 260

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP RN++ WN M+ G+      EEA ++FD+M       + +S+  ++S  +  G +   
Sbjct: 261 MPERNVVAWNVMLDGYVHLSPIEEACKLFDEM----PIKNSISWTTIISGLARAGKLQEA 316

Query: 204 RKHFASMT 211
           +     M+
Sbjct: 317 KDLLDKMS 324


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  250 bits (638), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 197/335 (58%), Gaps = 3/335 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VH  +    +  N+ V ++L+DMY KCG +++++ VF +M  K+ +S + ++ G
Sbjct: 115 LENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGG 174

Query: 62  YCQTGDFESVIRIFREM---EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y +       + +F +M    + D  +   +L ACA LA+L  GKEVH   +R     D 
Sbjct: 175 YSKNSLPNEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQ 234

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +ALVD+Y KCG    A  +F  +P ++LITW  MI+G+  +G G  A+  F++M + 
Sbjct: 235 QVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQA 294

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD VSFI +L ACSH GL+D G + F  M  E  +KPK+EHY C+VDLL R+G L  
Sbjct: 295 GIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAM 354

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   I++     D+++W  LL  C    +  +AE+VA+ + EL+P+    YVLL N Y  
Sbjct: 355 AYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAE 414

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             +W +  K+R  +   G+KK PG SWIE  SK++
Sbjct: 415 AEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVH 449



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 147/262 (56%), Gaps = 9/262 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VH   +   +       ++L+DMY KCG++D +  VFD M  +  V+ ++L+  Y +
Sbjct: 17  GRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAR 76

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVI 119
            G  +  IR+F EM+      D+F+   VL ACA   +L  GK+VH  YIR +  + ++ 
Sbjct: 77  EGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH-NYIRENDMQSNIF 135

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+D+YAKCG ++ A+ +FL+MPV+++I+WN+MI G+++N    EAL +F DM    
Sbjct: 136 VCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVL-E 194

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD  +   +L AC+ +  +DRG++    + +      + +  N +VD+  + G+   A
Sbjct: 195 MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQ-QVANALVDMYVKCGVPVLA 253

Query: 240 ETLIENADCRHDSSLWEVLLGA 261
             L +    + D   W V++  
Sbjct: 254 RLLFDMIPTK-DLITWTVMIAG 274



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 106/199 (53%), Gaps = 7/199 (3%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ACA    + LG+ VH   ++          + L+D+YAKCG +D A  +F  M VR 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           ++TW S+I+ +A+ G  +EA+R+F +M   G  PD  +   VL AC+  G ++ G K   
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENG-KDVH 122

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
           +  +E  ++  I   N ++D+  + G +E+A ++      + D   W  ++G  +  +N+
Sbjct: 123 NYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMIGGYS--KNS 179

Query: 269 HVAERVA---KKIMELKPD 284
              E ++     ++E+KPD
Sbjct: 180 LPNEALSLFGDMVLEMKPD 198


>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  250 bits (638), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 131/314 (41%), Positives = 194/314 (61%), Gaps = 7/314 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  +S++  Y KCG +DES  +FD M+ + SVS ++++ GY + G     + +F +M+
Sbjct: 196 DVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQ 255

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
               E+  F+   +L ACA L AL+ GK VH  YI+R+  + +VI+ +A++D+Y KCG V
Sbjct: 256 VEGFEVSEFTMVSLLNACAHLGALQHGKWVH-DYIKRNHFELNVIVVTAIIDMYCKCGSV 314

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT-KPDHVSFIGVLSA 193
           + A ++F   P R L  WNS+I G A NG   EA   F  +      KPD VSFIGVL+A
Sbjct: 315 ENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTA 374

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C H+G I++ R +F  M  +Y I+P I+HY C+VD+LG+AGLLEEAE LI+    + D+ 
Sbjct: 375 CKHLGAINKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAI 434

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           +W  LL +C   RN  +A R A+++ EL P     YVL+ NV+ A  ++ +A + R LMK
Sbjct: 435 IWGSLLSSCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMK 494

Query: 314 YSGVKKMPGKSWIE 327
            +  +K PG S IE
Sbjct: 495 ENLTEKEPGCSSIE 508



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/353 (20%), Positives = 148/353 (41%), Gaps = 54/353 (15%)

Query: 7   EVHAKVITLGLCGNVVVES-SLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++  +I  GL  N +  + +L       G ++ ++++F +M   N  S + +++ + ++
Sbjct: 46  QIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSRS 105

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
              +  I +F +M     +    ++  V +A A L     G ++H + ++     D  I 
Sbjct: 106 STPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFIC 165

Query: 122 SALVDLYAKCGCVDFAHQIF----LQMPVRNLITWNSMISGFAQ---------------- 161
           + ++ +YA  G +  A ++F    L++   +++  NSMI G+A+                
Sbjct: 166 NTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMIT 225

Query: 162 ---------------NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
                          NG+  EAL +F+ M   G +    + + +L+AC+H+G +  G K 
Sbjct: 226 RTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHG-KW 284

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
                K    +  +     ++D+  + G +E A  + E    R  S    +++G      
Sbjct: 285 VHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAM--- 341

Query: 267 NAHVAERVAKKIME-------LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312
           N H  ER A +          LKPD  +S++ +    + +G  N A     LM
Sbjct: 342 NGH--EREAFEFFSKLESSKLLKPDS-VSFIGVLTACKHLGAINKARDYFELM 391


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  250 bits (638), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 126/319 (39%), Positives = 191/319 (59%), Gaps = 5/319 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           NV+  ++L++ Y K G   ++  +FD M  ++ ++ +A++ GY Q G  +  + +FR M 
Sbjct: 547 NVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMI 606

Query: 79  ---EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               E +  +   VL ACA LA L  GK++HC+ IR    + V + +A++ +YA+ G V 
Sbjct: 607 LIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVP 666

Query: 136 FAHQIFLQMPVRN-LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
            A ++F Q+  R   ITW SMI   AQ+G GE+A+ +F++M   G KPDH++++GVLSAC
Sbjct: 667 LARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSAC 726

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           +H G +D+G++++  M  E+ I P++ HY CMVDL  RAGLL EA   I+      D+ +
Sbjct: 727 AHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVV 786

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LL AC   +NA +AE  A K++ + P    +Y  L NVY A GRWNDA +I  L K 
Sbjct: 787 WGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKD 846

Query: 315 SGVKKMPGKSWIEANSKLN 333
            GVKK  G SW     K++
Sbjct: 847 KGVKKETGFSWTHVRGKVH 865



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 162/359 (45%), Gaps = 77/359 (21%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDK------------------ 46
           G++VH  V+ LGL   V V +S++ MYGKCG  + +  VF++                  
Sbjct: 366 GRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTH 425

Query: 47  -------------MLKKNSVSSSALLQGYCQTGDFESVIRIFREM-----EEIDLFSFGI 88
                        M++++ VS + ++ GY Q G     ++ F  M      E D F+   
Sbjct: 426 QGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTS 485

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSG--CKDVIIESALVDLYAKCGCVDFAHQIFLQ--- 143
           VL ACA L  L++GK++H  YI R+G  C   I+ +AL+  YAK G V+ A +I  Q   
Sbjct: 486 VLSACANLRMLKMGKQMH-SYILRTGMPCSSQIM-NALISTYAKSGSVETARRIMDQAVV 543

Query: 144 ------------------------------MPVRNLITWNSMISGFAQNGRGEEALRIFD 173
                                         M  R++I W +MI G+ QNG+ +EA+ +F 
Sbjct: 544 ADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFR 603

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M   G +P+  +   VLSAC+ +  +D G++      +  + +  +   N ++ +  R+
Sbjct: 604 SMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQ-EQSVSVSNAIITVYARS 662

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
           G +  A  + +    R ++  W  ++ A         A  + ++++   +KPD H++YV
Sbjct: 663 GSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPD-HITYV 720



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 123/263 (46%), Gaps = 37/263 (14%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N    +SL+ +Y K G + ++H VF +M  +++VS + ++ G  ++G F   ++ F +M 
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                   F+   VL +CA + A  +G++VH   ++      V + ++++ +Y KCG  +
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAE 399

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE------------------ 177
            A  +F +M VR++ +WN M+S +   GR E A+ +F++M E                  
Sbjct: 400 TARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGL 459

Query: 178 --------------GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
                            +PD  +   VLSAC+++ ++  G K   S      +    +  
Sbjct: 460 DGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMG-KQMHSYILRTGMPCSSQIM 518

Query: 224 NCMVDLLGRAGLLEEAETLIENA 246
           N ++    ++G +E A  +++ A
Sbjct: 519 NALISTYAKSGSVETARRIMDQA 541



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 2/148 (1%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           ++    ++L+ LYAK G +  AH +F +MP R+ ++W  MI G  ++GR  +A++ F DM
Sbjct: 279 RNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDM 338

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  P   +   VLS+C+ M     GRK    + K   +   +   N ++ + G+ G 
Sbjct: 339 VSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVK-LGLSSCVPVANSVLYMYGKCGD 397

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACT 263
            E A  + E    R  SS W V++   T
Sbjct: 398 AETARAVFERMQVRSVSS-WNVMVSLYT 424


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  250 bits (638), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 123/332 (37%), Positives = 208/332 (62%), Gaps = 4/332 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++H   +   +  N+ V ++L+D+Y KCG++ ++ +VF+ M  K+SV+ S+++ GY Q 
Sbjct: 182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQN 241

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
            ++E  + ++R  + + L    F+   V+ AC+ LAAL  GK++H    +     +V + 
Sbjct: 242 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVA 301

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           S+ VD+YAKCG +  ++ IF ++  +NL  WN++ISGFA++ R +E + +F+ M + G  
Sbjct: 302 SSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMH 361

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+ V+F  +LS C H GL++ GR+ F  M   Y + P + HY+CMVD+LGRAGLL EA  
Sbjct: 362 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYE 421

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           LI++      +S+W  LL +C  ++N  +AE  A+K+ EL+P+   ++VLL N+Y A  +
Sbjct: 422 LIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQ 481

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           W +  K R L++   VKK+ GKSWI+   K++
Sbjct: 482 WEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVH 513



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 131/261 (50%), Gaps = 6/261 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           + K  H K+I + L G+V + + L++ Y KCG V+ + +VFD ML+++ VS + ++  Y 
Sbjct: 79  EAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 138

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           +       + IF EM     +   F+   VL AC         K++HC  ++     ++ 
Sbjct: 139 RNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLY 198

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+DLYAKCG +  A Q+F  M  ++ +TW+SM++G+ QN   EEAL ++       
Sbjct: 199 VGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMS 258

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            + +  +   V+ ACS++  +  G++  A + K       +   +  VD+  + G L E+
Sbjct: 259 LEQNQFTLSSVICACSNLAALIEGKQMHAVICKS-GFGSNVFVASSAVDMYAKCGSLRES 317

Query: 240 ETLIENADCRHDSSLWEVLLG 260
             +        +  LW  ++ 
Sbjct: 318 YIIFSEVQ-EKNLELWNTIIS 337



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 59/106 (55%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ CA   A+   K  H + IR     DV + + L++ Y+KCG V+ A Q+F  M  R+
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           L++WN+MI  + +N    EAL IF +M   G K    +   VLSAC
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK++HA +   G   NV V SS VDMY KCG + ES+ +F ++ +KN    + ++ G
Sbjct: 279 LIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISG 338

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CK 116
           + +    + V+ +F +M++  +     +F  +L  C     +  G+          G   
Sbjct: 339 FAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSP 398

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISG 158
           +V+  S +VD+  + G +  A+++   +P     + W S+++ 
Sbjct: 399 NVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 441


>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
          Length = 583

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 206/336 (61%), Gaps = 11/336 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++HA+++ LG   BV + +SLV  Y  C  +D +  VFD+M +++ VS + ++  
Sbjct: 144 LSEGEQIHAQILKLGFDSBVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDA 203

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC--- 115
           + + G+F++ + +F EM+   E D ++   +  ACAG+ +L LG   H   +++      
Sbjct: 204 FVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKXDADRV 263

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV++ ++LVD+Y KCG ++ A Q+F +MP R++ +WNSMI GF+ +G    AL  F  M
Sbjct: 264 NDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCM 323

Query: 176 TEG-GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
                  P+ ++F+GVLSAC+H GL+  GR++F  M  EY+IKP++EHY C+VDLL RAG
Sbjct: 324 VRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAG 383

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHV--AERVAKKIMELKPD-CHLSYVL 291
           L++EA  ++ N   R D  +W  LL AC   +NA V  +E +A +++E +   C   YVL
Sbjct: 384 LIDEALDVVSNMPMRPDLVIWRSLLDACCK-QNAGVELSEEMASRVLEAEGGVCSGVYVL 442

Query: 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           L  VY +  RWND   +R LM   GV K PG S IE
Sbjct: 443 LSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIE 478



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 136/280 (48%), Gaps = 27/280 (9%)

Query: 2   LKQGKEVHAKVI---------TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS 52
           + Q K++HA+ I         T  L   ++  SSL D+         + RVF ++   NS
Sbjct: 39  MSQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDL-------RYAFRVFHQIENPNS 91

Query: 53  VSSSALLQGYCQTGDF-ESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVH 106
              +AL++   ++ D  +  I ++  M E      D  +F  VL+ACA L AL  G+++H
Sbjct: 92  FMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIH 151

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
            Q ++     BV I ++LV  YA C  +DFA  +F +M  R+L++WN +I  F + G  +
Sbjct: 152 AQILKLGFDSBVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFD 211

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY---RIKPKIEHY 223
            AL +F +M +   +PD  +   + +AC+ MG +  G      + K+    R+   + + 
Sbjct: 212 AALNLFGEM-QKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKXDADRVNDVLLN- 269

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
             +VD+  + G LE A  L      R  +S   ++LG  T
Sbjct: 270 TSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFST 309


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 130/334 (38%), Positives = 207/334 (61%), Gaps = 8/334 (2%)

Query: 2   LKQGKEVHAKVITLG--LCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSAL 58
           L+QG+E+H  +   G  L  +VVV ++L++MY KCG ++E+ +VFD +    +SV  +A+
Sbjct: 150 LEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAM 209

Query: 59  LQGYCQTGDFESVIRIFREMEEI-DLF----SFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +  Y Q G  +  + ++R M +  DL     +F  V+  CA L+AL+ G+ +H +    +
Sbjct: 210 IAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATN 269

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              ++++ +ALV +Y KCGC+D A  +F  M +++ I+WN++IS +A +G  ++AL ++ 
Sbjct: 270 FDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQ 329

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           +M   G KP  V+F+G+LSACSH GL+  G  +F  M  ++RIKP + H+ C++DLLGR 
Sbjct: 330 EMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRG 389

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           G L EAE ++++   + ++  W  LLGAC T  +     R A ++++  P     YVLL 
Sbjct: 390 GRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLS 449

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           N+Y A GRW D  KIR +M   GVKK PGKSWIE
Sbjct: 450 NIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIE 483



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 153/271 (56%), Gaps = 14/271 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + QG+E+H      GL  NVVV ++++ MYGKCG +D++   F+++  KNSV+ +A++  
Sbjct: 47  IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 106

Query: 62  YCQTGDFESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG- 114
           Y   G     + +FREM E       D FSF I + AC+ L  L  G+E+H + +RR G 
Sbjct: 107 YKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIH-EMLRREGK 165

Query: 115 --CKDVIIESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRI 171
              KDV++ +AL+++Y+KCG ++ A ++F  +    + + WN+MI+ +AQ+GRG++AL +
Sbjct: 166 ELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDL 225

Query: 172 FDDMTEGGT-KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +  M +     P   +F+ V+  C+ +  + +GR   A + +       +   N +V + 
Sbjct: 226 YRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARV-RATNFDANLLVSNALVHMY 284

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           G+ G L+EA  +  +   + + S W  ++ +
Sbjct: 285 GKCGCLDEALDVFHSMKLKDEIS-WNTIISS 314



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL--SACSHMGLIDRGRK--HFASMT 211
           ++ F+ NG   EAL  F  M + G +PD V+F  +L   A      ID+GR+   +A ++
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
               + P +     ++ + G+ G L++A    E    + +S  W  ++
Sbjct: 61  G---LLPNVVVGTAVISMYGKCGRLDDARAAFEELQWK-NSVTWNAMM 104


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 127/332 (38%), Positives = 199/332 (59%), Gaps = 4/332 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VHA V+  G   N+VV SSL  MY K G + E  +V   M  +N V+ + L+ G  Q
Sbjct: 108 GKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQ 167

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G FE V+ ++  M+      D  +   V+ + A LA L  G+++H + I+      V +
Sbjct: 168 NGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAV 227

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            S+L+ +Y+KCGC++ + +  L     + + W+SMI+ +  +GRGEEA+ +F+ M + G 
Sbjct: 228 LSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGL 287

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             + V+F+ +L ACSH GL ++G   F  M ++Y +KP++EHY C+VDLLGR+G L+EAE
Sbjct: 288 GGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAE 347

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            +I +     D  +W+ LL AC   RNA +A R A++I+ L P    +YVLL N++ +  
Sbjct: 348 AMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASAK 407

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           RW D  K+RT M+   VKK PG SW+E  +++
Sbjct: 408 RWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRV 439



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 138/247 (55%), Gaps = 8/247 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N++  + L++ + + G +D + +VFD+ML++N  + +A++ G  Q    E+ + +FREM 
Sbjct: 22  NIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMH 81

Query: 80  EI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           E+    D F+ G VLR CAGL A   GK+VH   ++     ++++ S+L  +Y K G + 
Sbjct: 82  ELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLG 141

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
              ++   M +RN++ WN++I+G AQNG  E  L +++ M   G +PD ++ + V+S+ +
Sbjct: 142 EGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSA 201

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH-DSSL 254
            +  + +G++  A   K       +   + ++ +  + G LE++   +   DC H DS L
Sbjct: 202 ELATLFQGQQIHAEAIKA-GANSAVAVLSSLISMYSKCGCLEDSMKAL--LDCEHPDSVL 258

Query: 255 WEVLLGA 261
           W  ++ A
Sbjct: 259 WSSMIAA 265



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+++HA+ I  G    V V SSL+ MY KCG +++S +        +SV  S+++  
Sbjct: 206 LFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAA 265

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  E  + +F +ME+  L     +F  +L AC+       G       + + G K 
Sbjct: 266 YGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKP 325

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            +   + +VDL  + GC+D A  +   MP+  +++ W +++S 
Sbjct: 326 RLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSA 368



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 77/154 (50%), Gaps = 4/154 (2%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           ++++  + L++ + + G +D A ++F +M  RN+ TWN+M+SG  Q    E  L +F +M
Sbjct: 21  RNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREM 80

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E G  PD  +   VL  C+ +     G++  A + K Y  +  +   + +  +  ++G 
Sbjct: 81  HELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLK-YGYEFNLVVGSSLAHMYMKSGS 139

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           L E E +I+    R+  + W  L+      +N H
Sbjct: 140 LGEGEKVIKAMRIRNVVA-WNTLIAGNA--QNGH 170



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +Y K G +  A   F  MP+RN+++ N +I+G  Q+G  + A+++FD+M E
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLE 51


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 206/335 (61%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G++VH+ +   G   N+ + ++L+D+Y KCG ++ +  +F  +  K+ +S + L+ G
Sbjct: 251 IELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGG 310

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR-SGCK 116
           Y     ++  + +F++M    E+ +  +   +L ACA L A+ +G+ +H    +R  G  
Sbjct: 311 YTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVT 370

Query: 117 DVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +   + ++L+D+YAKCG ++ A Q+F  M  R+L +WN+MI GFA +GR   A  IF  M
Sbjct: 371 NASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 430

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G +PD ++F+G+LSACSH G++D GR  F SMT++Y++ PK+EHY CM+DL G +GL
Sbjct: 431 RKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGL 490

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            +EAE +I   +   D  +W  LL AC    N  + E  A+ +++++P+   SYVLL N+
Sbjct: 491 FKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNI 550

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           Y    RWN+  K R L+   G+KK+PG S IE +S
Sbjct: 551 YATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDS 585



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 162/321 (50%), Gaps = 39/321 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM------------------------------- 30
            K+G+++H +V+  G   ++ + +SL+ M                               
Sbjct: 119 FKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITG 178

Query: 31  YGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSF 86
           Y   G ++ +H++FD++  K+ VS +A + GY +TG+++  + +F++M +     D  + 
Sbjct: 179 YASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTM 238

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA   ++ LG++VH          ++ I +AL+DLY+KCG ++ A  +F  +  
Sbjct: 239 VTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSN 298

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +++I+WN++I G+      +EAL +F DM   G KP+ V+ + +LSAC+H+G ID GR  
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWI 358

Query: 207 FASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
              + K  + +         ++D+  + G +E A+ + ++   R  SS W  ++      
Sbjct: 359 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSS-WNAMIFGFAMH 417

Query: 266 RNAHVAERVAKKIME--LKPD 284
             A+ A  +  ++ +  ++PD
Sbjct: 418 GRANAAFDIFSRMRKNGIEPD 438



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 147/303 (48%), Gaps = 46/303 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL------VDESHRVFDKMLKKNSVSS 55
           L+  + +HA++I  GL       S L++    C L      +  +  VFD + +   +  
Sbjct: 15  LQSLRIIHAQMIKTGLHNTNYALSKLLE---XCVLSPHFDGLPYAISVFDTIQEPXLLIW 71

Query: 56  SALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIR 111
           + + +G+  + D  S ++++  M  + L    ++F  +L++CA   A + G+++H Q ++
Sbjct: 72  NTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLK 131

Query: 112 -------------------------------RSGCKDVIIESALVDLYAKCGCVDFAHQI 140
                                          +S  +DV+  +AL+  YA  G ++ AH++
Sbjct: 132 FGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKM 191

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F ++PV+++++WN+ ISG+A+ G  +EAL +F  M +   +PD  + + VLSAC+  G I
Sbjct: 192 FDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSI 251

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           + GR+   S   ++     ++  N ++DL  + G LE A  L +    + D   W  L+G
Sbjct: 252 ELGRQ-VHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNK-DVISWNTLIG 309

Query: 261 ACT 263
             T
Sbjct: 310 GYT 312


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 209/365 (57%), Gaps = 37/365 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD------------------- 45
           G+++H + I  GL  ++ V ++L+ MY  CG V E+ ++FD                   
Sbjct: 158 GRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAK 217

Query: 46  ------------KMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
                       +M ++N +S +A++ GY Q       I +FR M+    E D  +    
Sbjct: 218 VGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAA 277

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           L ACA L AL LG+ +H  YI + G   ++ + +AL+D+YAKCG ++ A ++F  M  ++
Sbjct: 278 LSACAHLGALELGEWIH-NYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKS 336

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +ITW SMI G A +G G EAL +F  M     KP+ ++F+ +LSAC H+GL++ GR +F 
Sbjct: 337 VITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFK 396

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            M  +Y IKPKI+HY CM+DLLGRAG L+EA+ L+       ++ +W  LL A     +A
Sbjct: 397 CMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDA 456

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            + ++  + +++++P    +Y LL N+Y    +WN+A  +R +M+ +GVKKMPG S IE 
Sbjct: 457 ELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEV 516

Query: 329 NSKLN 333
           N++++
Sbjct: 517 NNRVH 521



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 130/281 (46%), Gaps = 36/281 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK   + H  +++ GL  + ++ S  ++     G    SH +F    + +    + +++ 
Sbjct: 54  LKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKA 113

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                     I ++  +   DL    +S   VL+A   L A+ +G+++HCQ I      D
Sbjct: 114 LSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSD 173

Query: 118 VIIESALVDLYAKCGC-------------------------------VDFAHQIFLQMPV 146
           + + +AL+ +Y+ CGC                               VD A  +F +MP 
Sbjct: 174 IHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPE 233

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN+I+W ++I+G+AQ  R  EA+ +F  M     +PD ++ +  LSAC+H+G ++ G + 
Sbjct: 234 RNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELG-EW 292

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
             +   ++ +   +   N ++D+  + G +E+A  + +N +
Sbjct: 293 IHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNME 333



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 6/171 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +H  +   GL   V + ++L+DMY KCG ++++  VF  M  K+ ++ ++++ G
Sbjct: 287 LELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDG 346

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F  ME    + +  +F  +L AC  +  + +G+        + G K 
Sbjct: 347 LALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKP 406

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGE 166
            I     ++DL  + G +  A ++   MP   N   W S+++    +G  E
Sbjct: 407 KIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAE 457



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/232 (18%), Positives = 94/232 (40%), Gaps = 10/232 (4%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ C+ L  L    + HC  + R   +D I+ S  ++  +  G   ++H IF      +
Sbjct: 47  LLKQCSNLKHLH---QTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPD 103

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HF 207
           +  +N++I   +      EA+ +++ +     + D  S   VL A   +  I  GR+ H 
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
            ++     +   I     ++ +    G + EA  L +   C  D + W  ++       +
Sbjct: 164 QAIGTG--LVSDIHVVTALIQMYSSCGCVSEARQLFDGV-CFRDVAFWNAMVAGYAKVGD 220

Query: 268 AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
              A  + +++ E      +S+  +   Y  + R N+A  +   M+   V+ 
Sbjct: 221 VDNARHLFERMPERNV---ISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEP 269


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 202/368 (54%), Gaps = 37/368 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G+E+H  +   GL   + + ++L+DMY KCG ++    +FD M KK  VS + ++ G
Sbjct: 271 LKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVG 330

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV-------------------------------- 89
           Y + G  +   ++F +M E ++ ++  +                                
Sbjct: 331 YAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTM 390

Query: 90  ---LRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              L AC+ L AL  G   H  YI++     DV + +AL+D+YAKCG +  A Q+F +MP
Sbjct: 391 LHCLSACSQLGALDTGMWTH-NYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMP 449

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN +TW ++I G A  G   +A+  F  M + G  PD ++F+GVL+AC H GL++ GRK
Sbjct: 450 RRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRK 509

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +F  M   + + P+ +HY+CMV+LLGRAGLLEEAE LI+      D+ +W  L  AC   
Sbjct: 510 YFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIH 569

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           RN  + ER A K+++L P     YVLL N+YR  G+W +A  IR +M   GV+K PG S 
Sbjct: 570 RNLLIGERAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSS 629

Query: 326 IEANSKLN 333
           IE N  +N
Sbjct: 630 IEVNGIIN 637



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 153/322 (47%), Gaps = 49/322 (15%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G E+  +V+ +G   ++ + + ++ M    G    +H+VFD+   ++ VS ++L+ GY +
Sbjct: 173 GFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVR 232

Query: 65  TGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
                  + I+++M       +E+ +     V+ ACA L +L+LG+E+H +YI  SG   
Sbjct: 233 RRQPREAMGIYQQMITEHVKPDEVTMIG---VVSACAQLESLKLGREIH-RYIEESGLNL 288

Query: 117 DVIIESALVDLYAKCG-------------------------------CVDFAHQIFLQMP 145
            + + +AL+D+Y KCG                                +D A ++F  MP
Sbjct: 289 KISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMP 348

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR- 204
            +N++ WN+MI    Q     EAL +F +M     KPD V+ +  LSACS +G +D G  
Sbjct: 349 EKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMW 408

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
            H  +  K++ +   +     ++D+  + G + +A  +  N   R +S  W  ++G    
Sbjct: 409 TH--NYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVF-NEMPRRNSLTWTAIIGGLAL 465

Query: 265 FRNAHVAERVAKKIME--LKPD 284
           + N + A     K+++  L PD
Sbjct: 466 YGNVNDAIFYFSKMIDSGLMPD 487



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 128/254 (50%), Gaps = 14/254 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-----VDESHRVFDKMLKKNSVSSS 56
             Q K++ A++I  GL  +    S L+     C +     +D   ++ + +   N  S +
Sbjct: 66  FSQLKQIQAQMILTGLILDGFASSRLISF---CAISESRNLDYCIKILNNLQNPNVFSWN 122

Query: 57  ALLQGYCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           A+++G  ++ + +  + +++ M        D +++  + + CA L    +G E+  Q ++
Sbjct: 123 AVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLK 182

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
               KD+ + + ++ +    G    AH++F +  VR+L++WNS+I+G+ +  +  EA+ I
Sbjct: 183 MGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGI 242

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           +  M     KPD V+ IGV+SAC+ +  +  GR+      +E  +  KI   N ++D+  
Sbjct: 243 YQQMITEHVKPDEVTMIGVVSACAQLESLKLGRE-IHRYIEESGLNLKISLVNALMDMYV 301

Query: 232 RAGLLEEAETLIEN 245
           + G LE  + L +N
Sbjct: 302 KCGDLEAGKVLFDN 315


>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 196/333 (58%), Gaps = 7/333 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H+ V   G+  N+VV SSL+DMYGKC  VD++ RVFD M  +N VS ++++  
Sbjct: 144 LRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMDYRNVVSWTSMITA 203

Query: 62  YCQTGDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q    E  +++FRE   + L     F    V+ ACA L  L  GK  H   IRR    
Sbjct: 204 YGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVAHAAVIRRGHES 263

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + ++ SALVD+YAKCGC+ ++ ++F ++P  ++I + SMI G A+ G G+ +L IF +M 
Sbjct: 264 NDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEML 323

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +   KP+ V+F+GVL ACSH GL+D G ++  SM K++ + P  +HY C+VD+LGR G L
Sbjct: 324 DRRIKPNDVTFVGVLHACSHSGLVDDGLEYLHSMHKKHGVVPDTKHYTCVVDMLGRTGRL 383

Query: 237 EEAETLIENADCRHDSS--LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
           +EA  L ++     D    LW  LL A   +    +A   +K ++E       +YV + N
Sbjct: 384 DEAHQLAKSIQVEPDQGALLWGTLLSASRLYGRVDIAVEASKWLIESNQQVAAAYVTMSN 443

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            Y   G+W +   IR  MK+ GV K PG SW+E
Sbjct: 444 TYAMAGKWENVHSIRYEMKHYGVYKEPGCSWVE 476



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 122/210 (58%), Gaps = 7/210 (3%)

Query: 9   HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF 68
           H  V+  G   +    + L++ Y +    +++ ++F++M + N +S ++L+ G+ + G  
Sbjct: 50  HTNVLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRP 109

Query: 69  ESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESA 123
           +S + IF +M E     + F+F  V+ AC+ LA LR G+++H  ++   G + ++++ S+
Sbjct: 110 KSALLIFCKMLESWVLPNAFTFATVVNACSMLADLRTGQKIH-SHVEMFGVQCNLVVCSS 168

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE-GGTKP 182
           L+D+Y KC  VD A ++F  M  RN+++W SMI+ + QN  GE AL++F +      + P
Sbjct: 169 LIDMYGKCNNVDDARRVFDGMDYRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSP 228

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           +H     V++AC+ +G +  G+   A++ +
Sbjct: 229 NHFMLASVINACASLGRLVSGKVAHAAVIR 258



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 8/177 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RL  GK  HA VI  G   N VV S+LVDMY KCG +  S +VF ++   + +  ++++ 
Sbjct: 245 RLVSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIV 304

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKE-VHCQYIRRSGC 115
           G  + G  +  + IF+EM +  +     +F  VL AC+    +  G E +H  + +    
Sbjct: 305 GAAKYGLGKFSLDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVDDGLEYLHSMHKKHGVV 364

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQM---PVRNLITWNSMISGFAQNGRGEEAL 169
            D    + +VD+  + G +D AHQ+   +   P +  + W +++S     GR + A+
Sbjct: 365 PDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASRLYGRVDIAV 421



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
           H   ++     D    + L++ Y +    + A Q+F +M   N+I++ S+++GF + GR 
Sbjct: 50  HTNVLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRP 109

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225
           + AL IF  M E    P+  +F  V++ACS +  +  G+K   S  + + ++  +   + 
Sbjct: 110 KSALLIFCKMLESWVLPNAFTFATVVNACSMLADLRTGQK-IHSHVEMFGVQCNLVVCSS 168

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           ++D+ G+   +++A  + +  D R+  S W  ++ A
Sbjct: 169 LIDMYGKCNNVDDARRVFDGMDYRNVVS-WTSMITA 203


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 131/334 (39%), Positives = 203/334 (60%), Gaps = 6/334 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G+++H   I LGL  NV V  +L++MY  C  +D + RVFDK+ +   V+ +A++ G
Sbjct: 137 LEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITG 196

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +       + +FRE++  +L    +    VL +CA L AL LGK +H +Y++++G   
Sbjct: 197 YARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMH-EYVKKNGFNR 255

Query: 118 VI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            + +++AL+D+YAKCG +D A  +F  M VR+   W++MI  +A +G G +A+ +F +M 
Sbjct: 256 FVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMR 315

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + GT+PD ++F+G+L ACSH GL++ G ++F  M  +Y + P I+HY CMVDLLGRAG L
Sbjct: 316 KAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRL 375

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA   I     R    LW  LL AC +  N  + +RV ++I EL       Y++L N+ 
Sbjct: 376 EEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLC 435

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
              GRW D   +R LM   GV K+PG S +E N+
Sbjct: 436 ARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNN 469



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 142/273 (52%), Gaps = 21/273 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL------VDESHRVFDKMLKKNSVSS 55
           L++ K++ A  I   L  ++ V +  ++    C L      +  +H +FD++ + + V  
Sbjct: 33  LRELKQLQAFAIKTHLHSDLSVLTKFINF---CSLNPTTTSMQHAHHLFDQIPQPDIVLF 89

Query: 56  SALLQGYCQTGDFESVIRIFREMEEI-------DLFSFGIVLRACAGLAALRLGKEVHCQ 108
           + + +GY +T   ++ +R F    +I       D ++F  +L+ACA   AL  G+++HC 
Sbjct: 90  NTMARGYART---DTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCL 146

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
            I+    ++V +   L+++Y  C  +D A ++F ++    ++T+N+MI+G+A+  R  EA
Sbjct: 147 AIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEA 206

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           L +F ++     KP  V+ + VLS+C+ +G +D G K      K+      ++    ++D
Sbjct: 207 LSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG-KWMHEYVKKNGFNRFVKVDTALID 265

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +  + G L++A  + EN   R D+  W  ++ A
Sbjct: 266 MYAKCGSLDDAVCVFENMAVR-DTQAWSAMIMA 297


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 208/346 (60%), Gaps = 15/346 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+V A    +G   N+ V++S + +Y + G  DE+ R F++M   + ++ +A++ G
Sbjct: 297 LNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISG 356

Query: 62  YCQTGDFE-----------SVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVH 106
           Y Q  +               +++FR ++    + DLF+F  +L  C+ + AL  G+++H
Sbjct: 357 YAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIH 416

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
            Q I+     DV++ SALV++Y KCGC++ A + F++M +R L+TW SMISG++Q+GR +
Sbjct: 417 AQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQ 476

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           EA+++F+DM   G +P+ ++F+ VLSACS+ GL ++   +F  M +EY+I+P ++HY CM
Sbjct: 477 EAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDHYGCM 536

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286
           VD+  R G L++A   I       + ++W  L+  C +  N  +A   A +++EL+P   
Sbjct: 537 VDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLIELRPKGI 596

Query: 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            +YVLL N+Y +  RW+D  ++R LMK  G+  +  +SWI    K+
Sbjct: 597 ETYVLLLNMYISNERWHDVARVRKLMKQEGLGVLMDRSWITIKDKV 642



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 6/251 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   + +H  ++  G   ++ V +SLV+ Y +CG   ++  +FD+M +KN V+ +AL+ G
Sbjct: 94  LGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITG 153

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y         + +F EM E       ++ G +L AC+      LG +VH   I+      
Sbjct: 154 YTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSI 213

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE-ALRIFDDMT 176
             I ++L  +YAK G ++ A + F  +P +N+ITW +MIS  A++    E  L +F DM 
Sbjct: 214 TSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDML 273

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+  +   V+S C     ++ G K   +   +   +  I   N  + L  R G  
Sbjct: 274 MDGVLPNEFTLTSVMSLCGTRLDLNLG-KQVQAFCFKIGCQTNIPVKNSTMYLYLRKGET 332

Query: 237 EEAETLIENAD 247
           +EA    E  D
Sbjct: 333 DEAMRFFEEMD 343



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 125/252 (49%), Gaps = 19/252 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH   I         + +SL  MY K G ++ + R F  +  KN ++ + ++    +
Sbjct: 198 GSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAE 257

Query: 65  TGDFESV-IRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DV 118
             ++  + + +F +M       + F+   V+  C     L LGK+V   +  + GC+ ++
Sbjct: 258 DENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQA-FCFKIGCQTNI 316

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-----------NGRGEE 167
            ++++ + LY + G  D A + F +M   ++ITWN+MISG+AQ             RG +
Sbjct: 317 PVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQ 376

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
           AL++F ++     KPD  +F  +LS CS M  +++G +  A   K   +   + + + +V
Sbjct: 377 ALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVN-SALV 435

Query: 228 DLLGRAGLLEEA 239
           ++  + G +E+A
Sbjct: 436 NMYNKCGCIEDA 447



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 2/201 (0%)

Query: 67  DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVD 126
           D    + + RE + +    +  +L  C    +L   + +H   ++     D+ + ++LV+
Sbjct: 62  DVGEAMAMLREGKTVQSAMYVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVN 121

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
            Y +CG    A  +F QMP +N++TW ++I+G+  N +  EAL +F +M E G  P H +
Sbjct: 122 AYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYT 181

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
              +L+ACS     D G +     T +YR        N +  +  ++G LE A       
Sbjct: 182 LGAMLNACSASNNADLGSQ-VHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMV 240

Query: 247 DCRHDSSLWEVLLGACTTFRN 267
             ++  + W  ++ AC    N
Sbjct: 241 PDKNVIT-WTTMISACAEDEN 260


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 130/334 (38%), Positives = 209/334 (62%), Gaps = 6/334 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
            G+++HA  +  G   NV V SSL+DMY +   + E+  +F+ +  KN VS +AL+ G+ 
Sbjct: 224 HGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHA 283

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           + G+ E V+R+F +M     E   F++  VL ACA   +L  GK VH   I+  G     
Sbjct: 284 RKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAY 342

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I + L+D+YAK G +  A ++F ++  +++++WNS+ISG+AQ+G G EAL++F+ M +  
Sbjct: 343 IGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAK 402

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +P+ ++F+ VL+ACSH GL+D G+ +F  M K+++I+ ++ H+  +VDLLGRAG L EA
Sbjct: 403 VQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEA 461

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
              IE    +  +++W  LLGAC   +N  +    A++I EL P     +VLL N+Y + 
Sbjct: 462 NKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASA 521

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           GR +DA K+R +MK SGVKK P  SW+E  ++++
Sbjct: 522 GRLSDAAKVRKMMKESGVKKEPACSWVEIENEVH 555



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 140/247 (56%), Gaps = 6/247 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +LKQG+ +HA + +     ++V+ + +++MY KCG ++E+  +FDKM  K+ VS + L+ 
Sbjct: 120 KLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLIS 179

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q+G     + +F +M  +      F+   +L+A     +   G+++H   ++     
Sbjct: 180 GYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDM 239

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V + S+L+D+YA+   +  A  IF  +  +N+++WN++I+G A+ G GE  +R+F  M 
Sbjct: 240 NVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQML 299

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P H ++  VL AC+  G +++G+   A + K    +P     N ++D+  ++G +
Sbjct: 300 RQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGG-QPIAYIGNTLIDMYAKSGSI 357

Query: 237 EEAETLI 243
           ++A+ + 
Sbjct: 358 KDAKKVF 364



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 99/204 (48%), Gaps = 1/204 (0%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  +L  C  L  L+ G+ +H      +   D+++ + ++++YAKCG ++ A  +F +MP
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +++++W  +ISG++Q+G+  EAL +F  M   G +P+  +   +L A S  G  D   +
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGTGPSDHHGR 226

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
              + + +Y     +   + ++D+  R   + EA+ +  +   ++  S   ++ G     
Sbjct: 227 QLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKG 286

Query: 266 RNAHVAERVAKKIMELKPDCHLSY 289
              HV     + + +     H +Y
Sbjct: 287 EGEHVMRLFXQMLRQGFEPTHFTY 310



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VHA VI  G      + ++L+DMY K G + ++ +VF +++K++ VS ++++ G
Sbjct: 322 LEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISG 381

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +++F +M +  +     +F  VL AC+    L  G+       +      
Sbjct: 382 YAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQ 441

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           V     +VDL  + G ++ A++   +MP++     W +++
Sbjct: 442 VAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 481


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 205/335 (61%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G++VH+ +   G   N+ + ++L+D+Y KCG V+ +  +F+ +  K+ +S + L+ G
Sbjct: 236 IELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGG 295

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR-SGCK 116
           Y     ++  + +F+EM    E  +  +   +L ACA L A+ +G+ +H    +R  G  
Sbjct: 296 YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVA 355

Query: 117 DVIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +     ++L+D+YAKCG ++ A Q+F  +  R+L +WN+MI GFA +GR   A  IF  M
Sbjct: 356 NASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 415

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            +   +PD ++F+G+LSACSH G++D GR  F SM ++Y+I PK+EHY CM+DLLG +GL
Sbjct: 416 RKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGL 475

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            +EAE +I   +   D  +W  LL AC    N  + E  A+ +++++P    SYVLL N+
Sbjct: 476 FKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNI 535

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           Y   GRWN+  KIR L+   G+KK+PG S IE +S
Sbjct: 536 YATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDS 570



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 158/321 (49%), Gaps = 39/321 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            ++G+++H  V+ LG   ++ V +SL+ MY + G ++++ +VFD+   ++ VS +AL+ G
Sbjct: 104 FREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITG 163

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI--------------------------------- 88
           Y   G   S  ++F E+   D+ S+                                   
Sbjct: 164 YASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 223

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             V+ ACA  A++ LG++VH          ++ I +AL+DLY KCG V+ A  +F  +  
Sbjct: 224 VSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSY 283

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +++I+WN++I G+      +EAL +F +M   G  P+ V+ + +L AC+H+G I+ GR  
Sbjct: 284 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 343

Query: 207 FASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
              + K  + +     H   ++D+  + G +E A+ + ++   R  SS W  ++      
Sbjct: 344 HVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSS-WNAMIFGFAMH 402

Query: 266 RNAHVAERVAKKIM--ELKPD 284
             A+ A  +  ++   E++PD
Sbjct: 403 GRANAAFDIFSRMRKNEIEPD 423



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 142/297 (47%), Gaps = 46/297 (15%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGL------VDESHRVFDKMLKKNSVSSSALLQG 61
           +HA++I  GL       S L++    C L      +  +  VF+ + + N +  + + +G
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIEF---CVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIR------ 111
           +  + D  S + ++  M  + L    ++F  +L++CA   A R G+++H   ++      
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 112 -------------------------RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
                                    +S  +DV+  +AL+  YA  G +  A ++F ++P+
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +++++WN+MISG+A+ G  +EAL +F +M +   +PD  + + V+SAC+    I+ GR+ 
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ- 241

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
             S   ++     ++  N ++DL  + G +E A  L E    + D   W  L+G  T
Sbjct: 242 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISWNTLIGGYT 297


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 212/335 (63%), Gaps = 6/335 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCG--LVDESHRVFDKMLKKNSVSSSALLQGY 62
           GK  HA VI  GL  +V + ++L+ MY K     ++ +  +F  M  K+ VS +++L G+
Sbjct: 324 GKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGF 383

Query: 63  CQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G  E  +++F  M    EEID +++  VLR+C+ LA L+LG+++H   ++     + 
Sbjct: 384 SQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSND 443

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + S+L+ +Y+KCG ++ A + F      + ITWNS++  +AQ+G+G+ AL +F  M E 
Sbjct: 444 FVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMRER 503

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             K DHV+F+ VL+ACSH+GL+++GR    SM  +Y I P++EHY C VDL GRAG LEE
Sbjct: 504 EVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEE 563

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A+ LI++   + ++ + + LLGAC    N  +A +VA +++E++P+ H +YV+L N+Y  
Sbjct: 564 AKALIDSMPFQPNAMVLKTLLGACRACGNIELAAQVASQLLEVEPEEHCTYVILSNMYGH 623

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + RW+D   +  LM+   VKK+PG SWIE  ++++
Sbjct: 624 LKRWDDKASVTRLMRERKVKKVPGWSWIEVKNEVH 658



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 140/265 (52%), Gaps = 17/265 (6%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKC--GLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
            H +    G+  ++ V ++++  Y KC  G ++ + ++FD+M  K++V+ + ++ GY ++
Sbjct: 21  THCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVES 80

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G+  +     + M+    + D ++FG +L+  A      LG++VH   ++    + V   
Sbjct: 81  GNLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAG 140

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SAL+D+YAKC  V+ A+ +F  MPVRN ++WN++I GF Q G  + A  + D M + G +
Sbjct: 141 SALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVR 200

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR-IKPKIEHYNCMVDLLGRA----GLL 236
            +  +F  +L+      L+D  + +  +M    + IK  +E YN + +    A    GLL
Sbjct: 201 VEDGTFAPLLT------LLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLL 254

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           E+A+ + + A    D   W  +L A
Sbjct: 255 EDAKRVFDGAVGTRDLVTWNSMLVA 279



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 117/213 (54%), Gaps = 5/213 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH+ ++ +G   +V   S+L+DMY KC  V++++ VF  M  +N VS +AL+ G+ Q
Sbjct: 121 GQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQ 180

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD ++   +   M++    ++  +F  +L    G    +L  ++HC+ I+        +
Sbjct: 181 VGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNAL 240

Query: 121 ESALVDLYAKCGCVDFAHQIFL-QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
            +A +  Y++CG ++ A ++F   +  R+L+TWNSM+  +  + + E+A  +F +M   G
Sbjct: 241 CNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFG 300

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            +PD  ++  V+SAC      + G+   A + K
Sbjct: 301 FEPDIYTYTCVISACFAAAHKNYGKSFHALVIK 333



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 138/273 (50%), Gaps = 11/273 (4%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQGYCQT 65
           ++H K+I  GL     + ++ +  Y +CGL++++ RVFD  +  ++ V+ +++L  Y   
Sbjct: 224 QLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVH 283

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
              E    +F EM+    E D++++  V+ AC   A    GK  H   I+R   + V I 
Sbjct: 284 DKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTIC 343

Query: 122 SALVDLYAKCG--CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +AL+ +Y K     ++ A  +F  M  ++ ++WNS+++GF+Q G  E+AL++F  M    
Sbjct: 344 NALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSL 403

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            + D  ++  VL +CS + ++  G++ H  ++   +     +   + ++ +  + G++E+
Sbjct: 404 EEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVA--SSLIFMYSKCGIIED 461

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
           A    E+   +  S  W  ++ A        VA
Sbjct: 462 AWKCFEDT-TKESSITWNSIMFAYAQHGQGDVA 493



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 108/223 (48%), Gaps = 10/223 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H   +  G   N  V SSL+ MY KCG+++++ + F+   K++S++ ++++  
Sbjct: 424 LQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFA 483

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  + +F  M E    +D  +F  VL AC+ +  +  G+ V        G   
Sbjct: 484 YAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPP 543

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
            +   A  VDL+ + G ++ A  +   MP + N +   +++      G  E A ++   +
Sbjct: 544 RMEHYACAVDLFGRAGYLEEAKALIDSMPFQPNAMVLKTLLGACRACGNIELAAQVASQL 603

Query: 176 TEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
            E   +P +H +++ + +   H+   D  +     + +E ++K
Sbjct: 604 LE--VEPEEHCTYVILSNMYGHLKRWD-DKASVTRLMRERKVK 643


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 203/336 (60%), Gaps = 9/336 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD---ESHRVFDKMLKKNSVSSSALLQG 61
           G++ H K+I  G   N  V S L+D Y KCG  D   +S +VF ++L  + V  + ++ G
Sbjct: 259 GRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISG 318

Query: 62  YCQTGDF-ESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y    +  E  ++ FR+M+ I    D  SF  V  AC+ L++   GK++H   I+ +   
Sbjct: 319 YSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPS 378

Query: 117 DVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           + I + +AL+ LY K G +  A ++F +MP  N +++N MI G+AQ+G G EALR++  M
Sbjct: 379 NRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRM 438

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G  P++++F+ +LSAC+H G +D G+K+F +M + ++I+P+ EHY+CM+DLLGRAG 
Sbjct: 439 LDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGK 498

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           LEEAE  I+    +  S  W  LLGAC   +N  +AER AK++M ++P     YV+L N+
Sbjct: 499 LEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANM 558

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           Y   G+W +   +R  M+   ++K PG SWIE   K
Sbjct: 559 YADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKK 594



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 128/248 (51%), Gaps = 9/248 (3%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSALLQGYCQ 64
           K++H   ++ G      V ++ V  Y K GL+ E+  VF  M   ++ VS ++++  Y Q
Sbjct: 158 KQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQ 217

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             +    + +++EM     +ID+F+   VL A   L  L  G++ H + I+    ++  +
Sbjct: 218 HKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHV 277

Query: 121 ESALVDLYAKCGCVDF---AHQIFLQMPVRNLITWNSMISGFAQNGR-GEEALRIFDDMT 176
            S L+D Y+KCG  D    + ++F ++   +L+ WN+MISG++ N    EEA++ F  M 
Sbjct: 278 GSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQ 337

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD  SF+ V SACS++    +G++      K      +I   N ++ L  ++G L
Sbjct: 338 RIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNL 397

Query: 237 EEAETLIE 244
            +A  + +
Sbjct: 398 LDARRVFD 405



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 98/198 (49%), Gaps = 7/198 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV   + +V  Y K   +  + ++FD+  + ++VS + L+ GY    +  + + +F+ M 
Sbjct: 73  NVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMR 132

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           E    +D F+   ++ AC     + L K++HC  +         + +A V  Y+K G + 
Sbjct: 133 ELGFEVDGFTLSGLIAACCD--RVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLR 190

Query: 136 FAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
            A  +F  M  +R+ ++WNSMI  + Q+  G +AL ++ +M   G K D  +   VL+A 
Sbjct: 191 EAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNAL 250

Query: 195 SHMGLIDRGRKHFASMTK 212
           + +  +  GR+    + K
Sbjct: 251 TSLDHLIGGRQFHGKLIK 268



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 52/203 (25%)

Query: 99  LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF---------------------- 136
           L  GK +H  Y++        + +  V+LY+KCGC+ +                      
Sbjct: 24  LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKA 83

Query: 137 ---------AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187
                    A Q+F + P  + +++N++ISG+A       A+ +F  M E G + D  + 
Sbjct: 84  YAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTL 143

Query: 188 IGVLSACS---------HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            G+++AC          H   +  G   ++S+             N  V    + GLL E
Sbjct: 144 SGLIAACCDRVDLIKQLHCFAVSGGFDSYSSVN------------NAFVTYYSKGGLLRE 191

Query: 239 AETLIENADCRHDSSLWEVLLGA 261
           A ++    D   D   W  ++ A
Sbjct: 192 AVSVFYGMDGLRDEVSWNSMIVA 214


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 209/365 (57%), Gaps = 37/365 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD------------------- 45
           G+++H + I  GL  ++ V ++L+ MY  CG V E+ ++FD                   
Sbjct: 158 GRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAK 217

Query: 46  ------------KMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIV 89
                       +M ++N +S +A++ GY Q       I +FR M+    E D  +    
Sbjct: 218 VGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAA 277

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           L ACA L AL LG+ +H  YI + G   ++ + +AL+D+YAKCG ++ A ++F  M  ++
Sbjct: 278 LSACAHLGALELGEWIH-NYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKS 336

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +ITW SMI G A +G G EAL +F  M     KP+ ++F+ +LSAC H+GL++ GR +F 
Sbjct: 337 VITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFK 396

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            M  +Y IKPKI+HY CM+DLLGRAG L+EA+ L+       ++ +W  LL A     +A
Sbjct: 397 CMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDA 456

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            + ++  + +++++P    +Y LL N+Y    +WN+A  +R +M+ +GVKKMPG S IE 
Sbjct: 457 ELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEV 516

Query: 329 NSKLN 333
           N++++
Sbjct: 517 NNRVH 521



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 130/281 (46%), Gaps = 36/281 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK   + H  +++ GL  + ++ S  ++     G    SH +F    + +    + +++ 
Sbjct: 54  LKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKA 113

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                     I ++  +   DL    +S   VL+A   L A+ +G+++HCQ I      D
Sbjct: 114 LSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSD 173

Query: 118 VIIESALVDLYAKCGC-------------------------------VDFAHQIFLQMPV 146
           + + +AL+ +Y+ CGC                               VD A  +F +MP 
Sbjct: 174 IHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPE 233

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN+I+W ++I+G+AQ  R  EA+ +F  M     +PD ++ +  LSAC+H+G ++ G + 
Sbjct: 234 RNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELG-EW 292

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
             +   ++ +   +   N ++D+  + G +E+A  + +N +
Sbjct: 293 IHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNME 333



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 6/171 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +H  +   GL   V + ++L+DMY KCG ++++  VF  M  K+ ++ ++++ G
Sbjct: 287 LELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDG 346

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F  ME    + +  +F  +L AC  +  + +G+        + G K 
Sbjct: 347 LALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKP 406

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGE 166
            I     ++DL  + G +  A ++   MP   N   W S+++    +G  E
Sbjct: 407 KIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAE 457



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/232 (18%), Positives = 94/232 (40%), Gaps = 10/232 (4%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L+ C+ L  L    + HC  + R   +D I+ S  ++  +  G   ++H IF      +
Sbjct: 47  LLKQCSNLKHLH---QTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPD 103

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HF 207
           +  +N++I   +      EA+ +++ +     + D  S   VL A   +  I  GR+ H 
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
            ++     +   I     ++ +    G + EA  L +   C  D + W  ++       +
Sbjct: 164 QAIGTG--LVSDIHVVTALIQMYSSCGCVSEARQLFDGV-CFRDVAFWNAMVAGYAKVGD 220

Query: 268 AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
              A  + +++ E      +S+  +   Y  + R N+A  +   M+   V+ 
Sbjct: 221 VDNARHLFERMPERNV---ISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEP 269


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/364 (35%), Positives = 209/364 (57%), Gaps = 35/364 (9%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLV--------------------------- 37
           G+++HA  IT GL  +V V ++LV MY KCG V                           
Sbjct: 366 GEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQ 425

Query: 38  ----DESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF----REMEEIDLFSFGIV 89
               +++   FDKM ++N +S +++L  Y Q G +E  ++++    RE  + D  +F   
Sbjct: 426 AGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTS 485

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           + ACA LA L LG ++  Q  +     +V + +++V +Y++CG ++ A ++F  + ++NL
Sbjct: 486 ISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNL 545

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ++WN+M++G+AQNG+G + + IF+ M   G  PD +S++ VLS CSH G +  G+ +F S
Sbjct: 546 VSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLS 605

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           MTK++ I P  EH+ CMVDLLGRAG LE+A+ LI     + ++++W  LL AC    N  
Sbjct: 606 MTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTK 665

Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           +AE   K ++EL  +   SY LL N+Y   G+      +R LM+  GV+K PG SWIE +
Sbjct: 666 LAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVD 725

Query: 330 SKLN 333
           ++++
Sbjct: 726 NRVH 729



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 155/326 (47%), Gaps = 40/326 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  +HA+++ +  C +V     L+DMY KCG ++ + +VFD + + N+VS ++L+ G
Sbjct: 262 LEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGG 321

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  + +F +M E+    D F+   VL  C     + +G+++H   I R     
Sbjct: 322 VAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSS 381

Query: 118 VIIESALVDLYAKC-------------------------------GCVDFAHQIFLQMPV 146
           V + +ALV +YAKC                               G V+ A + F +MP 
Sbjct: 382 VPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPE 441

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN+I+WNSM++ + Q G  EE L+++  M   G K D ++F   +SAC+ + ++  G + 
Sbjct: 442 RNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQI 501

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
            A   K       +   N +V +  R G +EEA+ +  +   ++  S W  ++       
Sbjct: 502 LAQAEK-LGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVS-WNAMMAGYAQNG 559

Query: 267 NAHVAERVAKKIMELK--PDCHLSYV 290
                  + +K++ +   PD  +SYV
Sbjct: 560 QGRKVIEIFEKMLNIGNVPD-QISYV 584



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 150/303 (49%), Gaps = 50/303 (16%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            +++HA++I +GL  ++ +++ L++MY  CGL+ +++RVF  ++  N  S + ++ G+  
Sbjct: 23  ARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFAD 82

Query: 65  TGDFESVIRIFREMEEIDLFSFG-------------IVLRACAGLAALRLGKEVHCQYIR 111
           +G      ++F +M E D  S+                ++A   L  L+L  ++H    +
Sbjct: 83  SGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLALQLHGFAEK 142

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQI------------------------------- 140
                D  +E++++D+Y KCG +DFA ++                               
Sbjct: 143 FDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALEL 202

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F +MP R+ ++WN+MIS  +Q+G G E L  F +M   G +P+ +++  VLSAC+ +  +
Sbjct: 203 FAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDL 262

Query: 201 DRGRKHFASMTKEYRIKPKIEHY-NC-MVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           + G    A +    R++P ++ Y  C ++D+  + G LE A  + +     H++  W  L
Sbjct: 263 EWGAHLHARIV---RMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGL-TEHNAVSWTSL 318

Query: 259 LGA 261
           +G 
Sbjct: 319 IGG 321



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 153/368 (41%), Gaps = 46/368 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK   ++H          +  VE+S++DMY KCG +D + +VF +    +    ++++ G
Sbjct: 130 LKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYG 189

Query: 62  YCQTGDFESVIRIFREMEEIDLFS-----------------------------------F 86
           Y + G  +  + +F +M E D  S                                   +
Sbjct: 190 YSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTY 249

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL AC  +  L  G  +H + +R   C DV     L+D+YAKCG ++ A Q+F  +  
Sbjct: 250 ASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTE 309

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK- 205
            N ++W S+I G AQ G  EEAL +F+ M E     D  +   VL  C     I  G + 
Sbjct: 310 HNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQL 369

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           H  ++T+   +   +   N +V +  + G + +A    E    R D   W  ++   T F
Sbjct: 370 HAHTITR--GLDSSVPVANALVTMYAKCGDVWKANHAFELMPIR-DIISWTAMI---TAF 423

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
             A   E+  +   ++     +S+  +   Y   G W +  K+   M   GVK      W
Sbjct: 424 SQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK----TDW 479

Query: 326 IEANSKLN 333
           I  ++ ++
Sbjct: 480 ITFSTSIS 487



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 70/121 (57%), Gaps = 4/121 (3%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           ++ CA L ++ + +++H Q I       + +++ L+++Y+ CG +  A+++F  +   N+
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
            +WN+MISGFA +G+  EA ++F+ M E     D VS+  ++S   H G ++   K   S
Sbjct: 71  YSWNTMISGFADSGQMREAEKLFEKMPE----RDSVSWNSMMSGYFHNGELEATIKASGS 126

Query: 210 M 210
           +
Sbjct: 127 L 127


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 211/368 (57%), Gaps = 39/368 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH  VI  GL  +  V S+++DMYGKCG V E  RVFD++ +    S +A L G  +
Sbjct: 259 GAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSR 318

Query: 65  TGDFESVIRIF--------------------------REMEEIDLF----SFGI------ 88
            G  ++ + +F                          +++E ++LF    ++G+      
Sbjct: 319 NGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVT 378

Query: 89  ---VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              ++ AC  ++AL  GKE+HC  +RR    DV + SAL+D+YAKCG +  A + F +M 
Sbjct: 379 IPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMS 438

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             NL++WN+++ G+A +G+ +E + +F  M + G KPD V+F  VLSAC+  GL + G +
Sbjct: 439 ALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWR 498

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            + SM++E+ I+PK+EHY C+V LL R G LEEA ++I+      D+ +W  LL +C   
Sbjct: 499 CYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVH 558

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  + E  A+K+  L+P    +Y+LL N+Y + G W++  +IR +MK  G++K PG SW
Sbjct: 559 NNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSW 618

Query: 326 IEANSKLN 333
           IE   K++
Sbjct: 619 IEVGHKVH 626



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 17/221 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYG--------KCGLVDESHRVFDKMLKKNSV 53
           L Q ++ HA ++ L L  +  + +SL+  Y         +  L   SH     +      
Sbjct: 16  LSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLF----- 70

Query: 54  SSSALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQY 109
           S S+L+  + ++  F  V+  F  +  +    D F     +++CA L AL  G+++H   
Sbjct: 71  SFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFA 130

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
                  D I+ S+L  +Y KC  +  A ++F +MP R+++ W++MI+G+++ G  EEA 
Sbjct: 131 AASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAK 190

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
            +F +M  GG +P+ VS+ G+L+   + G  D     F  M
Sbjct: 191 ELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMM 231



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 74/278 (26%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++HA     G   + +V SSL  MY KC  + ++ ++FD+M  ++ V  SA++ G
Sbjct: 120 LDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAG 179

Query: 62  YCQTGDFESVIRIFREM--------------------------EEIDLF----------- 84
           Y + G  E    +F EM                          E + +F           
Sbjct: 180 YSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPD 239

Query: 85  --SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC--------- 133
             +   VL A   L  + +G +VH   I++    D  + SA++D+Y KCGC         
Sbjct: 240 GSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFD 299

Query: 134 ----------------------VDFAHQIFLQMPVR----NLITWNSMISGFAQNGRGEE 167
                                 VD A ++F +   +    N++TW S+I+  +QNG+  E
Sbjct: 300 EVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLE 359

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           AL +F DM   G +P+ V+   ++ AC ++  +  G++
Sbjct: 360 ALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKE 397



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+H   +  G+  +V V S+L+DMY KCG +  + R FDKM   N VS +A+++G
Sbjct: 392 LMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKG 451

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  + +F  M    ++ DL +F  VL ACA       G   +       G + 
Sbjct: 452 YAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEP 511

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMIS 157
            +   A LV L ++ G ++ A+ I  +MP   +   W +++S
Sbjct: 512 KMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLS 553


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 130/331 (39%), Positives = 198/331 (59%), Gaps = 7/331 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++HA  +  G   +V V S+LVDMY +CG +D +   FD M  K+ VS +AL+ G
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISG 264

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + + G+ E  + +  +M+  +     F++  V  ACA + AL  GK VH   I+ SG K 
Sbjct: 265 HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIK-SGLKL 323

Query: 118 V-IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  I + L+D+YAK G +D A ++F ++   ++++WN+M++G AQ+G G+E L  F+ M 
Sbjct: 324 IAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQML 383

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P+ +SF+ VL+ACSH GL+D G  +F  M K+Y+++P + HY   VDLLGR GLL
Sbjct: 384 RIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLL 442

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           + AE  I        +++W  LLGAC   +N  +    A++  EL P      +LL N+Y
Sbjct: 443 DRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIY 502

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            + GRW D  K+R +MK SGVKK P  SW+E
Sbjct: 503 ASAGRWRDVAKVRKMMKESGVKKQPACSWVE 533



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 148/268 (55%), Gaps = 7/268 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           +++QG+ VHA ++      N +V+++ +V+MY KCG +D++ R+FD+M  K+ V+ +AL+
Sbjct: 102 KVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALI 161

Query: 60  QGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G+ Q       + +F +M  + L    F+   +L+A      L  G ++H   ++    
Sbjct: 162 AGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQ 221

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             V + SALVD+YA+CG +D A   F  MP ++ ++WN++ISG A+ G GE AL +   M
Sbjct: 222 SSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKM 281

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                +P H ++  V SAC+ +G +++G+   A M K   +K      N ++D+  +AG 
Sbjct: 282 QRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKS-GLKLIAFIGNTLLDMYAKAGS 340

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACT 263
           +++A+ + +    + D   W  +L  C 
Sbjct: 341 IDDAKRVFDRL-VKPDVVSWNTMLTGCA 367


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 202/337 (59%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ V   V+  G+  N  + S+L+ MY KCG +  S R+FD M  ++ ++ +A +  
Sbjct: 235 LELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISA 294

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I +F  M+E     +  +   VL ACA + AL LGK++      R    D
Sbjct: 295 YAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHD 354

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT- 176
           + + +AL+D+YAKCG ++ A ++F  MP +N  +WN+MIS  A +G+ +EAL +F+ M+ 
Sbjct: 355 IFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSD 414

Query: 177 EGGT-KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           EGG+ +P+ ++F+ +LSAC H GL+D G + F  M+  + + PKIEHY+CMVDLL RAG 
Sbjct: 415 EGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGH 474

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L EA  +IE    + D+     L  AC   +N  + ERV + ++EL P    +Y++   +
Sbjct: 475 LYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKI 534

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           Y  +  W+DA ++R LM+ +GV K PG SWIE  ++L
Sbjct: 535 YENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQL 571



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 168/324 (51%), Gaps = 20/324 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++  +  H +V  LGL  +    +S+V MY +CG    + +VFD++ +K+ VS ++LL G
Sbjct: 133 IRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSG 192

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y + G     + +F  + E      D  S   VL AC  L  L LG+ V    + R    
Sbjct: 193 YAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKV 252

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  I SAL+ +Y+KCG +  + +IF  MP R+ ITWN+ IS +AQNG  +EA+ +F  M 
Sbjct: 253 NSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK 312

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGR 232
           E G  P+ V+   VLSAC+ +G +D G++       EY     ++H       ++D+  +
Sbjct: 313 ENGVDPNKVTLTAVLSACASIGALDLGKQ-----MDEYATHRGLQHDIFVATALIDMYAK 367

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA----ERVAKKIMELKPDCHLS 288
            G LE A+ +  +   ++D+S W  ++ A  +   A  A    ER++ +    +P+  ++
Sbjct: 368 CGSLESAQRVFNDMPRKNDAS-WNAMISALASHGKAKEALSLFERMSDEGGSARPN-DIT 425

Query: 289 YVLLDNVYRAVGRWNDAFKIRTLM 312
           +V L +     G  ++ +++  +M
Sbjct: 426 FVSLLSACVHAGLVDEGYRLFDMM 449



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 83/143 (58%), Gaps = 5/143 (3%)

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
           D+   + ++ +M+ +++    F+F  V  ACA L  +R+ +  HC+  +     D    +
Sbjct: 97  DYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVN 156

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTK 181
           ++V +Y +CG    A ++F ++  ++L++WNS++SG+A+ G   EA+ +F  +  E G +
Sbjct: 157 SMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFE 216

Query: 182 PDHVSFIGVLSACSHMGLIDRGR 204
           PD +S + VL AC  +G ++ GR
Sbjct: 217 PDEMSLVSVLGACGELGDLELGR 239


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/336 (37%), Positives = 203/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK +H+  I  G+  ++ V ++L+DMY KCG V +S ++F+ M   ++V+ + ++  
Sbjct: 424 LKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISA 483

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + GDF + +++  +M +     D+ +F + L  CA LAA RLGKE+HC  +R     +
Sbjct: 484 CVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESE 543

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I +AL+++Y+KCGC++ + ++F +M  R+++TW  MI  +   G GE+AL  F DM +
Sbjct: 544 LQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEK 603

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V FI ++ ACSH GL+++G   F  M   Y+I P IEHY C+VDLL R+  + 
Sbjct: 604 SGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKIS 663

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +AE  I+      D+S+W  +L AC T  +   AERV+++I+EL PD     +L  N Y 
Sbjct: 664 KAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYA 723

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A+ +W+    IR  ++   +KK PG SWIE   K++
Sbjct: 724 ALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVH 759



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 117/208 (56%), Gaps = 5/208 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSALLQ 60
           L + + +HA VI+LGL G+      L+D Y        S  VF ++   KN    +++++
Sbjct: 20  LNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIR 79

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            + + G F   +  + ++ E     D ++F  V++ACAGL    +G  V+ Q +      
Sbjct: 80  AFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFES 139

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+ + +ALVD+Y++ G +  A Q+F +MPVR+L++WNS+ISG++ +G  EEAL I+ ++ 
Sbjct: 140 DLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELR 199

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGR 204
                PD  +   VL A +++ ++ +G+
Sbjct: 200 NSWIVPDSFTVSSVLPAFANLLVVKQGQ 227



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 152/291 (52%), Gaps = 13/291 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +KQG+ +H   +  G+    VV + L+ MY K     ++ RVFD+M+ ++SV+ + ++ G
Sbjct: 223 VKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICG 282

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI-----VLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y +    E  +++F  +E +D F   I     VL AC  L  L L K ++   +R     
Sbjct: 283 YLKLEMVEESVKMF--LENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVL 340

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  +++ L+D+YAKCG +  A  +F  M  ++ ++WNS+ISG+ Q+G   EA+++F  M 
Sbjct: 341 ESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMM 400

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               + DH++++ ++S  + +  +  G+   ++  K   I   +   N ++D+  + G  
Sbjct: 401 IMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKS-GIYIDLSVSNALIDMYAKCG-- 457

Query: 237 EEAETL-IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK--PD 284
           E  ++L I N+    D+  W  ++ AC  F +     +V  ++ + K  PD
Sbjct: 458 EVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPD 508



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 136/264 (51%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K ++  ++  G      V++ L+D+Y KCG +  +  VF+ M  K++VS ++++ G
Sbjct: 323 LSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISG 382

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q+GD    +++F+ M    E+ D  ++ +++     LA L+ GK +H   I+     D
Sbjct: 383 YIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYID 442

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+D+YAKCG V  + +IF  M   + +TWN++IS   + G     L++   M +
Sbjct: 443 LSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRK 502

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               PD  +F+  L  C+ +     G++    + + +  + +++  N ++++  + G LE
Sbjct: 503 NKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR-FGYESELQIGNALIEMYSKCGCLE 561

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            +  + E    R D   W  ++ A
Sbjct: 562 SSFRVFERMS-RRDVVTWTGMIYA 584



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 3/181 (1%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           S   + RA +  + L   + +H   I             L+D Y+       +  +F ++
Sbjct: 6   SSAFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRV 65

Query: 145 -PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
            P +N+  WNS+I  F++NG   +AL  +  + E    PD  +F  V+ AC+ +   + G
Sbjct: 66  SPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMG 125

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
              +  +  E   +  +   N +VD+  R GLL  A  + +    R D   W  L+   +
Sbjct: 126 DLVYKQIL-EMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVR-DLVSWNSLISGYS 183

Query: 264 T 264
           +
Sbjct: 184 S 184


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 203/362 (56%), Gaps = 36/362 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K GK++HA+ +      + VV+SSLVDMY K  L D    VFD + + +S+S +A++ G
Sbjct: 127 VKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISG 186

Query: 62  YCQTGDFESVIRIFREMEEIDLFSF--------------------------GI------- 88
           Y ++G     + +FRE    +L+++                          G+       
Sbjct: 187 YARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLV 246

Query: 89  ---VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              V+ ACA  A   LGK+VHC  I       + I +ALVD+YAKC  V  A  IF +M 
Sbjct: 247 LSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMR 306

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +++++W S+I G AQ+G  EEAL ++DDM   G KP+ V+F+G++ ACSH+GL+ +GR 
Sbjct: 307 RKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRA 366

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F SM +++ I+P ++HY C++DL  R+G L+EAE LI     + D   W  LL AC   
Sbjct: 367 LFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHH 426

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  +A R+A  +++LKP+   SY+LL N+Y   G W +   +R LM    VKK+PG S 
Sbjct: 427 GNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSC 486

Query: 326 IE 327
           ++
Sbjct: 487 VD 488



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 8/175 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            K++HA++I  GL  +     +L+D YGKCGL+ ++ ++FD + +++ V+ + +L   C 
Sbjct: 27  AKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSA-CN 85

Query: 65  TGD-----FESVIRIFREMEEIDLFSFGIVLRACAGLAAL--RLGKEVHCQYIRRSGCKD 117
             +     F   + I  E  + D F F  +++ACA L ++  +LGK++H +++     +D
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
            +++S+LVD+YAK    D+   +F  +   + I+W +MISG+A++GR  EAL +F
Sbjct: 146 DVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELF 200



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 49/98 (50%)

Query: 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFA 160
           + K++H Q I+            L+D Y KCG +  A ++F  +P ++ + W +++S   
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACN 85

Query: 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +    +A  I   +   G +PDH  F  ++ AC+++G
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLG 123


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/361 (36%), Positives = 198/361 (54%), Gaps = 36/361 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  +HA+ + +G   NV V SSL+DMY KC    ++  +FD + +KN V  ++L  G
Sbjct: 398 LRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASG 457

Query: 62  YCQTGDFESVIRIFREMEEIDLFS-----------------------------------F 86
           Y   G     + +F++M   +L S                                   F
Sbjct: 458 YSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITF 517

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA L +L  GK  H + I+    + + I +AL D+YAK G +  + ++F QMP 
Sbjct: 518 SSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPE 577

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN +TW +MI G A+NG  EE++ +F+DM   G  P+  +F+ +L ACSH GL+++   +
Sbjct: 578 RNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHY 637

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F  M + + I PK +HY CMVD+L RAG L EAE L+     + +++ W  LL AC T++
Sbjct: 638 FEKM-QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYK 696

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  + ER AK++ EL  D    YVLL N+Y + GRW DA +IR LMK + +KK  G SW+
Sbjct: 697 NEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWV 756

Query: 327 E 327
           +
Sbjct: 757 Q 757



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 131/275 (47%), Gaps = 37/275 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++L+D+Y + G +D + RV D M ++N VS   L+  + Q G+    ++++ +M 
Sbjct: 315 DVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQML 374

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 ++  F  VL ACA L  LR G  +H + ++     +V + S+L+D+Y KC    
Sbjct: 375 ADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCR 434

Query: 136 FAHQIFLQMPVRNLITWNSM-------------------------------ISGFAQNGR 164
            A  IF  +P +N++ WNS+                               ISG+AQN +
Sbjct: 435 DAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQ 494

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
             +ALR F+ M   G  P  ++F  VL AC+++  +  G+   A   K   ++  I    
Sbjct: 495 FVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIK-LGMEESIFIGT 553

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            + D+  ++G L+ ++ +      R+D + W  ++
Sbjct: 554 ALSDMYAKSGDLQSSKRMFYQMPERNDVT-WTAMI 587



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 36/214 (16%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  +++VD   K G V E+  ++++    +    +A + G+ +     + + +FR+M 
Sbjct: 182 SVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMV 241

Query: 80  EIDLFSFGI----VLRACAG-----LAALRLGKEVHCQYIRRS----------------- 113
              +   GI    +++AC G     LA   +G  +   +   S                 
Sbjct: 242 SCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMGDA 301

Query: 114 ----------GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
                       KDV+  +AL+D+Y++ G +D A ++   MP RN ++W ++I+   Q G
Sbjct: 302 AAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRG 361

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
              EA++++  M   G +P+   F  VLSAC+ +
Sbjct: 362 NAAEAVKLYSQMLADGCRPNISCFSSVLSACATL 395



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 95/262 (36%), Gaps = 39/262 (14%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSA--- 57
           RL     +HA  +  G+  +  V S L+  Y       E  R F   +   + S      
Sbjct: 98  RLPLALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDF 157

Query: 58  LLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           ++  + + GD  S   +F  M E                                   + 
Sbjct: 158 MVHEHVKAGDIASARGLFDGMPE-----------------------------------RS 182

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V+  + +VD   K G V  A +++ Q P  ++  + + ISGF +N     AL +F  M  
Sbjct: 183 VVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMVS 242

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+ ++F+ ++ AC   G          S  K    +  IE  N ++ L  R G   
Sbjct: 243 CGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMGDAA 302

Query: 238 EAETLIENADCRHDSSLWEVLL 259
            A  + +  D + D   W  LL
Sbjct: 303 AARKVFDEMDVK-DVVSWTALL 323


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/316 (40%), Positives = 193/316 (61%), Gaps = 7/316 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           +V+  ++++  Y   G V+    +F++M ++N  S +AL+ GY   G F  V+  F+ M 
Sbjct: 326 DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRML 385

Query: 79  EEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGC 133
            E D+     +   VL ACA L AL LGK VH  Y   SG K +V + +AL+D+YAKCG 
Sbjct: 386 SESDVPPNDATLVTVLSACARLGALDLGKWVHV-YAESSGLKGNVYVGNALMDMYAKCGI 444

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           ++ A  +F  M  ++LI+WN++I G A + RG +AL +F  M   G KPD ++FIG+L A
Sbjct: 445 IENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCA 504

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+HMGL++ G  +F SM  +Y I P+IEHY CMVD+L RAG LE+A   +       D  
Sbjct: 505 CTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGV 564

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           +W  LLGAC  ++N  +AE   ++++EL+P    +YV+L N+Y   GRW D  +++  M+
Sbjct: 565 IWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMR 624

Query: 314 YSGVKKMPGKSWIEAN 329
            +G KK+PG S IE N
Sbjct: 625 DTGFKKLPGCSLIEVN 640



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 136/261 (52%), Gaps = 7/261 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G++VH  +I  G  GN  V ++L+DMY   G V +++++F +M ++N V+ ++++ G
Sbjct: 215 LIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMING 274

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           Y  + D  S  R+F    E D+  + I++        +   +++  +   R    DV+  
Sbjct: 275 YILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNR----DVMFW 330

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGT 180
           + ++  YA  G V+    +F +MP RN+ +WN++I G+A NG   E L  F  M +E   
Sbjct: 331 NTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDV 390

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+  + + VLSAC+ +G +D G K      +   +K  +   N ++D+  + G++E A 
Sbjct: 391 PPNDATLVTVLSACARLGALDLG-KWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAI 449

Query: 241 TLIENADCRHDSSLWEVLLGA 261
           ++    D + D   W  L+G 
Sbjct: 450 SVFRGMDTK-DLISWNTLIGG 469



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 14/263 (5%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           KQ  ++ A++I  G   N  +   LV +      +  + ++FD++   N    +++ +GY
Sbjct: 115 KQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGY 174

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q+  +  V+ +F +M+ +D+    F+F +VL++C  + AL  G++VHC  I+     + 
Sbjct: 175 AQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNP 234

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + L+D+Y+  G V  A++IF +M  RN++ W SMI+G+  +     A R+FD   E 
Sbjct: 235 FVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPER 294

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
               D V +  ++S     G +   RK F  M         +  +N ++      G +E 
Sbjct: 295 ----DVVLWNIMVSGYIEGGDMVEARKLFXEMPNR-----DVMFWNTVLKGYATNGNVEA 345

Query: 239 AETLIENADCRHDSSLWEVLLGA 261
            E L E    R+  S W  L+G 
Sbjct: 346 LEGLFEEMPERNIFS-WNALIGG 367



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH    + GL GNV V ++L+DMY KCG+++ +  VF  M  K+ +S + L+ G
Sbjct: 410 LDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGG 469

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                     + +F +M    ++ D  +F  +L AC  +  +  G         +S   D
Sbjct: 470 LAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYF-----QSMADD 524

Query: 118 VIIESA------LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            +I         +VD+ A+ G ++ A     +MPV  + + W  ++
Sbjct: 525 YLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLL 570


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 215/362 (59%), Gaps = 37/362 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VHA V   G   + + E++L+DMY KCG +  +++V+++M ++++VS ++L+ G+ +
Sbjct: 125 GQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVR 184

Query: 65  TGDFESV-------------------------------IRIFREME----EIDLFSFGIV 89
            G  +S                                + IFREM+    E D  S   V
Sbjct: 185 LGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISV 244

Query: 90  LRACAGLAALRLGKEVHCQYIRRSG-CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           L ACA L AL +GK +H +Y  +SG  K+  + +ALV++YAKCGC+D A  +F QM  ++
Sbjct: 245 LPACAQLGALEVGKWIH-KYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKD 303

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +I+W++MI G A +G+G  A+R+F+DM + G  P+ V+F+GVLSAC+H GL + G ++F 
Sbjct: 304 VISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFD 363

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            M  +Y ++P+IEHY C+VDLLGR+G +E+A   I     + DS  W  LL +C    N 
Sbjct: 364 VMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNL 423

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            +A    +++++L+P+   +YVLL N+Y  + +W     +R L++   +KK PG S IE 
Sbjct: 424 EIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEV 483

Query: 329 NS 330
           N+
Sbjct: 484 NN 485



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 165/351 (47%), Gaps = 41/351 (11%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++ + K++HA ++ L L  +  + + ++D+      VD +  +F ++   N  S +A+++
Sbjct: 19  KIAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIR 78

Query: 61  GYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            Y         I +F +M        D F+F  V+++CAGL   RLG++VH    +    
Sbjct: 79  TYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPK 138

Query: 116 KDVIIESALVDLYAKCGCVDFAHQ-------------------------------IFLQM 144
              I E+AL+D+Y KCG +  A+Q                               +F +M
Sbjct: 139 THAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEM 198

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P R +++W +MI+G+A+ G   +AL IF +M   G +PD +S I VL AC+ +G ++ G+
Sbjct: 199 PCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGK 258

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
                  K   +K     +N +V++  + G ++EA  L  N     D   W  ++G    
Sbjct: 259 WIHKYSEKSGFLK-NAGVFNALVEMYAKCGCIDEAWGLF-NQMIEKDVISWSTMIGGLAN 316

Query: 265 FRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
               + A RV + + +  + P+  +++V + +     G WN+  +   +M+
Sbjct: 317 HGKGYAAIRVFEDMQKAGVTPN-GVTFVGVLSACAHAGLWNEGLRYFDVMR 366


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 203/362 (56%), Gaps = 35/362 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--------------------------- 34
           + QG +VHA V  +G   +++++S+LVDMY KC                           
Sbjct: 321 IDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITV 380

Query: 35  ----GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSF 86
               G +D++ ++FD M  K+ +S ++++ G+ Q       + +F EM ++    D FS 
Sbjct: 381 YSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSL 440

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             V+ ACA +++L LG+++  +        D II ++LVD Y KCG V+   ++F +M  
Sbjct: 441 AGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMK 500

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
            + + WNSM+ G+A NG G EAL +FD M   G +P  ++F+GVLSAC H GL++ GRK 
Sbjct: 501 SDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKW 560

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F +M  +Y I P IEHY+CMVDL  RAGLLE+A  LIE    + D+S+W  +L  C    
Sbjct: 561 FYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHG 620

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  + ++VAK+I++L P+   +YV L  +Y     W  + ++R LM    + K+PG SW 
Sbjct: 621 NNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKVPGCSWA 680

Query: 327 EA 328
           ++
Sbjct: 681 DS 682



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 154/339 (45%), Gaps = 74/339 (21%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++HA+++   +  + V+ SSLV++YGKCG +D ++ V + M + ++ S SAL+ G
Sbjct: 189 LDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISG 248

Query: 62  YCQTGDFESVIRIF----------------------REMEEIDLF-------------SF 86
           Y   G      RIF                        +E ++LF             +F
Sbjct: 249 YASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTF 308

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK---------------- 130
             VL AC+ L  +  G +VH    +     D+II+SALVD+Y+K                
Sbjct: 309 ASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQA 368

Query: 131 ---------------CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
                          CG +D A QIF  MP ++LI+WNSMI GF+QN    EAL +F +M
Sbjct: 369 YDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEM 428

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRA 233
            + G + D  S  GV+SAC+ +  ++ G + FA  T    I  + +      +VD   + 
Sbjct: 429 NKLGLRMDKFSLAGVISACASISSLELGEQIFARATI---IGLEFDQIISTSLVDFYCKC 485

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
           GL+E    L +    + D   W  +L    T  N H  E
Sbjct: 486 GLVEHGRKLFDRM-MKSDEVPWNSMLMGYAT--NGHGIE 521



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 43/231 (18%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NVV+       + K G ++ + R+F++M  KN ++ ++++ GY   G  +  + +F+++ 
Sbjct: 108 NVVISG-----FAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLS 162

Query: 80  EI-------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132
                    D F    V+ AC  L AL  GK++H + +      D ++ S+LV+LY KCG
Sbjct: 163 LNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCG 222

Query: 133 CVDFAHQIFLQMPVRN-------------------------------LITWNSMISGFAQ 161
            +D A+ +   M   +                               ++ WNSMISG+  
Sbjct: 223 DIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVA 282

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           N    EAL +F++M   G + D+ +F  VLSACS +G+ID+G +  A + K
Sbjct: 283 NNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYK 333



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 121/248 (48%), Gaps = 42/248 (16%)

Query: 2   LKQGKEVHAKVITLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           + +G+ +H   +  G+  +V+ + + L+ MY +C  + E+ ++F++M K+N  S + +++
Sbjct: 22  IYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIE 81

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           GY ++G     + +F  M   D FS+ +V+                              
Sbjct: 82  GYLKSGSKGKSLELFDSMPHKDAFSWNVVISG---------------------------- 113

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
                  +AK G ++ A ++F +MP +N I WNSMI G+A NGR +EA+ +F D++    
Sbjct: 114 -------FAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPL 166

Query: 181 K---PDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +    D      V+ AC+++G +D G++ H   +  E      +   + +V+L G+ G +
Sbjct: 167 ERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLG--SSLVNLYGKCGDI 224

Query: 237 EEAETLIE 244
           + A  ++ 
Sbjct: 225 DSANHVLN 232


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 141/371 (38%), Positives = 208/371 (56%), Gaps = 41/371 (11%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML------------ 48
           R+  G+ VH + + +GL G+  V +SL+DMY KCG++ ++ ++FDKM+            
Sbjct: 196 RVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIA 255

Query: 49  -------------------KKNSVSSSALLQGYCQTGDFESVIRIFREMEE------IDL 83
                               +N VS +A++ GY Q G  E  + +F EM +       + 
Sbjct: 256 GYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNW 315

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIF- 141
            +   VL ACA  AAL  G+ +H  +    G   +  +++AL  +YAKC  +  A   F 
Sbjct: 316 VTIVSVLPACAQSAALERGRRIH-DFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFD 374

Query: 142 -LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
            +    +NLI WN+MI+ +A +G G EA+ IF++M   G +PD V+F+G+LS CSH GLI
Sbjct: 375 MIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLI 434

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           D G  HF  M   + ++P++EHY C+VDLLGRAG L EA+ LI     +   S+W  LL 
Sbjct: 435 DAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLA 494

Query: 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
           AC + RN  +AE  A+++  L+PD   +YVLL N+Y   G W +  K+R L+KY G+KK 
Sbjct: 495 ACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKS 554

Query: 321 PGKSWIEANSK 331
           PG SWIE N K
Sbjct: 555 PGCSWIEINGK 565



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 127/244 (52%), Gaps = 40/244 (16%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G++ HA+++  GL  N  + + +V MY   G +D +  VFD++   +S+  +++++ 
Sbjct: 93  IKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRA 152

Query: 62  YCQTGD-------FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y + G         E+  R+       D F+   VL++CA L+ + +G+ VH Q +R   
Sbjct: 153 YTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGL 212

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR--------------------------- 147
             D  + ++L+D+Y KCG +  A ++F +M VR                           
Sbjct: 213 EGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFER 272

Query: 148 ----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGT--KPDHVSFIGVLSACSHMGLID 201
               N+++W +MISG+ QNG  E+AL +FD+M + G+  KP+ V+ + VL AC+    ++
Sbjct: 273 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 332

Query: 202 RGRK 205
           RGR+
Sbjct: 333 RGRR 336


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 216/371 (58%), Gaps = 40/371 (10%)

Query: 5   GKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G++VH + I +G  G ++ V ++L+DMY KCG +   HRVFD+ML ++ +S ++L+  Y 
Sbjct: 158 GRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYA 217

Query: 64  QTGDFESVIRIF----------------------REMEEIDLF----SFGI--------- 88
           + G+ E+   +F                      R  E +++F    + G+         
Sbjct: 218 KVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVG 277

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSG---CKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           V+ ACA L A +    V      +SG     +V++ SAL+D+YAKCG V+ A+++F +M 
Sbjct: 278 VISACAQLGAAKYANWVR-DVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERME 336

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN+ +++SMI GFA +G    A+ +FD+M +   KP+ V+FIGVL+ACSH G++++G++
Sbjct: 337 ERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQ 396

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            FA M + + + P  +HY CMVDLLGRAG LEEA  L++         +W  LLGAC   
Sbjct: 397 LFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIH 456

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  +A+  A  + EL+P+   +Y+LL N+Y + GRW+D  K+R LM+  G+KK PG SW
Sbjct: 457 GNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSW 516

Query: 326 IEANSKLNHDL 336
           +E    + H+ 
Sbjct: 517 VEGKKGIIHEF 527



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 144/303 (47%), Gaps = 49/303 (16%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHR-VFDKMLKKNSVSSSALL 59
           + Q K+VHA +   GL     V + L+    K  + +D   R VF ++   N    +AL+
Sbjct: 52  INQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALI 111

Query: 60  QGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           +GY   G F   + ++  M    +    F+F  +L+AC+    + LG++VH Q I   G 
Sbjct: 112 RGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGF 171

Query: 116 -KDVIIESALVDLYAKCGCVDFAHQIFLQM------------------------------ 144
             D+ + + L+D+Y KCGC+   H++F +M                              
Sbjct: 172 GSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDG 231

Query: 145 -PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
            P+++++ W +M++G+AQN R  EAL +F+ M   G K D V+ +GV+SAC+ +     G
Sbjct: 232 LPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQL-----G 286

Query: 204 RKHFASMTKE------YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
              +A+  ++      +     +   + ++D+  + G +E+A  + E  + R+  S   +
Sbjct: 287 AAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSM 346

Query: 258 LLG 260
           ++G
Sbjct: 347 IVG 349



 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 5/146 (3%)

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           YCQ      +    R+ ++I       VL  C  +  +   K+VH    R+   +   + 
Sbjct: 18  YCQLQTQSFIPFSVRQEQKILESRLVSVLHGCTHINQV---KQVHAHIFRKGLEQCCFVL 74

Query: 122 SALVDLYAKCGCV--DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + L+    K       +   +F Q+   N   W ++I G+A  G   E++ +++ M   G
Sbjct: 75  AKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQG 134

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK 205
             P   +F  +L ACS    ++ GR+
Sbjct: 135 IGPVSFTFTALLKACSAALDVNLGRQ 160


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 204/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G  VH  ++ +GL  NV V ++L+ MY KC  VD +  VFD++ ++  VS +A++ G
Sbjct: 278 LDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILG 337

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  +R+F  M+    + D F+   V+ A A ++     + +H   IR    +D
Sbjct: 338 CAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQD 397

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+D+YAKCG V+ A  +F     R++ITWN+MI G+  +G G+ A+ +F++M  
Sbjct: 398 VYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKS 457

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+  +F+ VLSACSH GL+D GR++F SM ++Y ++P +EHY  MVDLLGRAG L+
Sbjct: 458 IGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLD 517

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I+        S++  +LGAC   +N  +AE  A+KI EL P   + +VLL N+Y 
Sbjct: 518 EAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYA 577

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
               W D  ++RT M+ +G++K PG S I+  ++++
Sbjct: 578 NASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIH 613



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 164/322 (50%), Gaps = 15/322 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VHA++   G+    +  ++L +MY KC    ++ RVFD+M  ++ V+ +AL+ G
Sbjct: 75  LATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAG 134

Query: 62  YCQTG----DFESVIRIFREM-EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y + G      E V+R+  E  E  D  +   VL ACA   AL   +E H   IR SG +
Sbjct: 135 YARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIR-SGLE 193

Query: 117 DVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +++ + +A++D Y KCG +  A  +F  MP +N ++WN+MI G+AQNG   EAL +F+ M
Sbjct: 194 ELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRM 253

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E G     VS +  L AC  +G +D G +    + +   +   +   N ++ +  +   
Sbjct: 254 VEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR-IGLDSNVSVMNALITMYSKCKR 312

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCHLSYVLLD 293
           ++ A  + +  D R   S W  ++  C     +  A R+  ++    +KPD   S+ L+ 
Sbjct: 313 VDLASHVFDELDRRTQVS-WNAMILGCAQNGCSEDAVRLFTRMQLENVKPD---SFTLV- 367

Query: 294 NVYRAVGRWNDAFKIRTLMKYS 315
           +V  A+   +D  + R +  YS
Sbjct: 368 SVIPALADISDPLQARWIHGYS 389



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 1/111 (0%)

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
           L +F  +L+ CA    L  G+ VH Q   R    + +  +AL ++YAKC     A ++F 
Sbjct: 59  LRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFD 118

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT-EGGTKPDHVSFIGVLS 192
           +MPVR+ + WN++++G+A+NG    A+ +   M  E G +PD ++ + VL 
Sbjct: 119 RMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLP 169


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 202/336 (60%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+E+H  V+  G   +V V ++L+DMY KCG V  +  VFDK+L +++V  +++L  
Sbjct: 192 IEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAA 251

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  ++ + +  EM    L     +    + A A  AAL  G+E+H    R+     
Sbjct: 252 YSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESH 311

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +++ALVD+YAKCG V  A  +F ++ V+ +++WN+MI+G+A +G   EAL +F++M  
Sbjct: 312 DKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNR 371

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPDH++F+GVLSACSH GL++ G   F +M ++Y+I P ++HY CMVDLLG +G L+
Sbjct: 372 VA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLD 430

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI       DS +W  LL +C    N  + E   ++++EL+PD   +YV+L N+Y 
Sbjct: 431 EAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYA 490

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W    K+R LM    +KK    SWIE  +K++
Sbjct: 491 QAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVH 526



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 164/295 (55%), Gaps = 10/295 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K GK++HA+V   G   + V+ + LV++Y  C  +  +  +FD++ K N    + L++G
Sbjct: 91  IKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRG 150

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G +E+ ++++ +M +  L    F+F  VL+ACA L+A+  G+E+H   ++    KD
Sbjct: 151 YAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKD 210

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+D+YAKCGCV  A ++F ++ VR+ + WNSM++ ++QNG  +  L +  +M  
Sbjct: 211 VFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVL 270

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G +P   + +  +SA +    + +GR+ H  S  +E+    K++    +VD+  + G +
Sbjct: 271 TGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVK--TALVDMYAKCGSV 328

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL-KPDCHLSYV 290
             A  L E    +   S W  ++       +A  A  + +++  + KPD H+++V
Sbjct: 329 RVARNLFERLGVKRVVS-WNAMITGYAMHGHATEALDLFEEMNRVAKPD-HITFV 381



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 12/189 (6%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           ++  +L++C    A++ GK++H Q        D +I + LV+LY  C  +  A  +F ++
Sbjct: 77  NYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRI 136

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P  N+  WN +I G+A NG  E A++++  M + G  PD+ +F  VL AC+ +  I+ GR
Sbjct: 137 PKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGR 196

Query: 205 KHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +       E+ ++   E        ++D+  + G +  A  + +    R D+ LW  +L 
Sbjct: 197 E-----IHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR-DAVLWNSMLA 250

Query: 261 ACTTFRNAH 269
           A +  +N H
Sbjct: 251 AYS--QNGH 257


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 204/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G  VH  ++ +GL  NV V ++L+ MY KC  VD +  VFD++ ++  VS +A++ G
Sbjct: 278 LDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILG 337

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  +R+F  M+    + D F+   V+ A A ++     + +H   IR    +D
Sbjct: 338 CAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQD 397

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+D+YAKCG V+ A  +F     R++ITWN+MI G+  +G G+ A+ +F++M  
Sbjct: 398 VYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKS 457

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+  +F+ VLSACSH GL+D GR++F SM ++Y ++P +EHY  MVDLLGRAG L+
Sbjct: 458 IGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLD 517

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I+        S++  +LGAC   +N  +AE  A+KI EL P   + +VLL N+Y 
Sbjct: 518 EAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYA 577

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
               W D  ++RT M+ +G++K PG S I+  ++++
Sbjct: 578 NASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIH 613



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 164/322 (50%), Gaps = 15/322 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VHA++   G+    +  ++L +MY KC    ++ RVFD+M  ++ V+ +AL+ G
Sbjct: 75  LATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAG 134

Query: 62  YCQTG----DFESVIRIFREM-EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y + G      E V+R+  E  E  D  +   VL ACA   AL   +E H   IR SG +
Sbjct: 135 YARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIR-SGLE 193

Query: 117 DVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +++ + +A++D Y KCG +  A  +F  MP +N ++WN+MI G+AQNG   EAL +F+ M
Sbjct: 194 ELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRM 253

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E G     VS +  L AC  +G +D G +    + +   +   +   N ++ +  +   
Sbjct: 254 VEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR-IGLDSNVSVMNALITMYSKCKR 312

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCHLSYVLLD 293
           ++ A  + +  D R   S W  ++  C     +  A R+  ++    +KPD   S+ L+ 
Sbjct: 313 VDLASHVFDELDRRTQVS-WNAMILGCAQNGCSEDAVRLFTRMQLENVKPD---SFTLV- 367

Query: 294 NVYRAVGRWNDAFKIRTLMKYS 315
           +V  A+   +D  + R +  YS
Sbjct: 368 SVIPALADISDPLQARWIHGYS 389



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 57  ALLQGYCQTGDFESVIRIFREMEEID----LFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           A L+      D  + +  F  M        L +F  +L+ CA    L  G+ VH Q   R
Sbjct: 29  ARLRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAAR 88

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               + +  +AL ++YAKC     A ++F +MPVR+ + WN++++G+A+NG    A+ + 
Sbjct: 89  GIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMV 148

Query: 173 DDMT-EGGTKPDHVSFIGVLS 192
             M  E G +PD ++ + VL 
Sbjct: 149 VRMQEEEGERPDSITLVSVLP 169


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/316 (40%), Positives = 193/316 (61%), Gaps = 7/316 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           +V+  ++++  Y   G V+    +F++M ++N  S +AL+ GY   G F  V+  F+ M 
Sbjct: 263 DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRML 322

Query: 79  EEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGC 133
            E D+     +   VL ACA L AL LGK VH  Y   SG K +V + +AL+D+YAKCG 
Sbjct: 323 SESDVPPNDATLVTVLSACARLGALDLGKWVHV-YAESSGLKGNVYVGNALMDMYAKCGI 381

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           ++ A  +F  M  ++LI+WN++I G A + RG +AL +F  M   G KPD ++FIG+L A
Sbjct: 382 IENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCA 441

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+HMGL++ G  +F SM  +Y I P+IEHY CMVD+L RAG LE+A   +       D  
Sbjct: 442 CTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGV 501

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           +W  LLGAC  ++N  +AE   ++++EL+P    +YV+L N+Y   GRW D  +++  M+
Sbjct: 502 IWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMR 561

Query: 314 YSGVKKMPGKSWIEAN 329
            +G KK+PG S IE N
Sbjct: 562 DTGFKKLPGCSLIEVN 577



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 136/261 (52%), Gaps = 7/261 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G++VH  +I  G  GN  V ++L+DMY   G V +++++F +M ++N V+ ++++ G
Sbjct: 152 LIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMING 211

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           Y  + D  S  R+F    E D+  + I++        +   +++  +   R    DV+  
Sbjct: 212 YILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNR----DVMFW 267

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGT 180
           + ++  YA  G V+    +F +MP RN+ +WN++I G+A NG   E L  F  M +E   
Sbjct: 268 NTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDV 327

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+  + + VLSAC+ +G +D G K      +   +K  +   N ++D+  + G++E A 
Sbjct: 328 PPNDATLVTVLSACARLGALDLG-KWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAI 386

Query: 241 TLIENADCRHDSSLWEVLLGA 261
           ++    D + D   W  L+G 
Sbjct: 387 SVFRGMDTK-DLISWNTLIGG 406



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 14/263 (5%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           KQ  ++ A++I  G   N  +   LV +      +  + ++FD++   N    +++ +GY
Sbjct: 52  KQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGY 111

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q+  +  V+ +F +M+ +D+    F+F +VL++C  + AL  G++VHC  I+     + 
Sbjct: 112 AQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNP 171

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + L+D+Y+  G V  A++IF +M  RN++ W SMI+G+  +     A R+FD   E 
Sbjct: 172 FVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPER 231

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
               D V +  ++S     G +   RK F  M         +  +N ++      G +E 
Sbjct: 232 ----DVVLWNIMVSGYIEGGDMVEARKLFHEMPNR-----DVMFWNTVLKGYATNGNVEA 282

Query: 239 AETLIENADCRHDSSLWEVLLGA 261
            E L E    R+  S W  L+G 
Sbjct: 283 LEGLFEEMPERNIFS-WNALIGG 304



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH    + GL GNV V ++L+DMY KCG+++ +  VF  M  K+ +S + L+ G
Sbjct: 347 LDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGG 406

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                     + +F +M    ++ D  +F  +L AC  +  +  G         +S   D
Sbjct: 407 LAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYF-----QSMADD 461

Query: 118 VIIESA------LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            +I         +VD+ A+ G ++ A     +MPV  + + W  ++
Sbjct: 462 YLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLL 507


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/326 (38%), Positives = 192/326 (58%), Gaps = 4/326 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH  V+ LG   +  +  SL+  Y  C  ++ +H++F++ L KN V  +ALL  Y  
Sbjct: 221 GVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVW 280

Query: 65  TGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               +  +R+F +M ++       +F I L+AC GL AL  GKE+H   I+     DV +
Sbjct: 281 NNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFV 340

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++LV +Y +CG V+ A  +F  +  +++++WNS+I G AQ+G G  AL  F+ M   G 
Sbjct: 341 GNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGV 400

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+ ++F G+LSACS  G++ +GR  F  +++      + +HY CMVD+LGR G L+EAE
Sbjct: 401 DPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAE 460

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            L+     + +S +W  LL AC    N  VAER AK I++L+P+C  +YVLL N+Y + G
Sbjct: 461 ELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAG 520

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWI 326
           RW D  ++R  MK  G+ K PG SW+
Sbjct: 521 RWADVSRMRVKMKQGGLVKQPGSSWV 546



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 127/277 (45%), Gaps = 36/277 (12%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV+  +++V+ Y K G V+ + R+F  M  K+  + +A++ GY + G  E  +R+F EM 
Sbjct: 104 NVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMP 163

Query: 80  EIDLFS-----------------------------------FGIVLRACAGLAALRLGKE 104
             D+ S                                   F  VL ACA      LG +
Sbjct: 164 VRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQ 223

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
           VH   ++        I  +L+  YA C  ++ AH+IF +   +N++ W ++++ +  N +
Sbjct: 224 VHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNK 283

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
            ++ALR+F DMT+ G  P+  +F   L AC  +  +D+G K   +M  +  ++  +   N
Sbjct: 284 HQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKG-KEIHTMAIKLGLETDVFVGN 342

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            +V +    G +  A  +  N + +   S   +++G+
Sbjct: 343 SLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGS 379



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 104/196 (53%), Gaps = 8/196 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RL Q + +  K+ +     N+ + + ++  Y +   + ++ ++FD+M  ++ VS +++++
Sbjct: 27  RLDQARLIFDKIPS----PNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIK 82

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           G    G+     R+F EM E ++ S+  ++        + L + +          KDV  
Sbjct: 83  GCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDM----HVKDVAA 138

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A+V  Y + G V+   ++F +MPVR++I+W SMI G   NG+ EEAL +F  M   G 
Sbjct: 139 WNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGV 198

Query: 181 KPDHVSFIGVLSACSH 196
           +P   +F  VLSAC++
Sbjct: 199 EPTWSTFACVLSACAN 214



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 14/167 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GKE+H   I LGL  +V V +SLV MY +CG V+ +  VF  + +K+ VS ++++ G
Sbjct: 319 LDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVG 378

Query: 62  YCQTG-------DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
             Q G        F  +IR   +  EI   +F  +L AC+    L  G+    +YI R  
Sbjct: 379 SAQHGFGLWALIFFNQMIRRGVDPNEI---TFTGLLSACSRSGMLLKGR-CFFEYISRYK 434

Query: 115 CKDVIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
              +  +  + +VD+  +CG +D A ++   MPV+ N + W +++S 
Sbjct: 435 SNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSA 481


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/332 (39%), Positives = 194/332 (58%), Gaps = 4/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GKE+H  ++   L   V V S++ DMY KCG +D ++  F +M  ++SV  ++++  
Sbjct: 431 LKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISS 490

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  E  I +FR+M     + D  S    L A A L AL  GKE+H   IR +   D
Sbjct: 491 FSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSD 550

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + S L+D+Y+KCG +  A  +F  M  +N ++WNS+I+ +  +G   E L ++ +M  
Sbjct: 551 TFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLR 610

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PDHV+F+ ++SAC H GL+D G  +F  MT+EY I  ++EHY CMVDL GRAG + 
Sbjct: 611 AGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVH 670

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I++     D+ +W  LLGAC    N  +A+  ++ ++EL P     YVLL NV+ 
Sbjct: 671 EAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHA 730

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
             G W    K+R+LMK  GV+K+PG SWI+ N
Sbjct: 731 DAGEWASVLKVRSLMKEKGVQKIPGYSWIDVN 762



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 5/241 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH    +LG   ++   S+L+ +Y   G + ++ RVFD++  ++++  + +L+GY ++GD
Sbjct: 134 VHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGD 193

Query: 68  FESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
           F++ I  F EM      ++  ++  +L  CA       G ++H   I      D  + + 
Sbjct: 194 FDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANT 253

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           LV +Y+KCG + +A ++F  MP  + +TWN +I+G+ QNG  +EA  +F+ M   G KPD
Sbjct: 254 LVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPD 313

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
            V+F   L +    G + R  K   S    +R+   +   + ++D+  + G +E A  + 
Sbjct: 314 SVTFASFLPSILESGSL-RHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIF 372

Query: 244 E 244
           +
Sbjct: 373 Q 373



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 110/188 (58%), Gaps = 4/188 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  KEVH+ ++   +  +V ++S+L+D+Y K G V+ + ++F + +  +    +A++ G
Sbjct: 330 LRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISG 389

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     I  FR + +     +  +   VL ACA +AAL+ GKE+HC  +++     
Sbjct: 390 YVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENI 449

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SA+ D+YAKCG +D A++ F +M  R+ + WNSMIS F+QNG+ E A+ +F  M  
Sbjct: 450 VNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGM 509

Query: 178 GGTKPDHV 185
            G K D V
Sbjct: 510 SGAKFDSV 517



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 130/261 (49%), Gaps = 6/261 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H  VI  G   +  V ++LV MY KCG +  + ++F+ M + ++V+ + L+ GY Q
Sbjct: 232 GTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQ 291

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +    +F  M     + D  +F   L +     +LR  KEVH   +R     DV +
Sbjct: 292 NGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYL 351

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           +SAL+D+Y K G V+ A +IF Q  + ++    +MISG+  +G   +A+  F  + + G 
Sbjct: 352 KSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGM 411

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             + ++   VL AC+ +  +  G++    + K+ R++  +   + + D+  + G L+ A 
Sbjct: 412 VTNSLTMASVLPACAAVAALKPGKELHCHILKK-RLENIVNVGSAITDMYAKCGRLDLAY 470

Query: 241 TLIENADCRHDSSLWEVLLGA 261
                   R DS  W  ++ +
Sbjct: 471 EFFRRMSDR-DSVCWNSMISS 490



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 131/266 (49%), Gaps = 10/266 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESS-LVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++Q ++VH +VI  G+ G+V   SS ++ +Y  CG   ++  +F ++  + ++  + +++
Sbjct: 27  VQQARQVHTQVIVGGM-GDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRYALPWNWMIR 85

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G    G F+  +  + +M       D ++F  V++AC GL  + L   VH          
Sbjct: 86  GLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHV 145

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+   SAL+ LYA  G +  A ++F ++P+R+ I WN M+ G+ ++G  + A+  F +M 
Sbjct: 146 DLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMR 205

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              +  + V++  +LS C+  G    G + H   +   +   P++   N +V +  + G 
Sbjct: 206 TSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVA--NTLVAMYSKCGN 263

Query: 236 LEEAETLIENADCRHDSSLWEVLLGA 261
           L  A  L  N   + D+  W  L+  
Sbjct: 264 LLYARKLF-NTMPQTDTVTWNGLIAG 288



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 6/173 (3%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA-LVDLYAKCGCVDFAHQIFLQMPVR 147
           + RAC+  + ++  ++VH Q I   G  DV   S+ ++ LY  CG    A  +F ++ +R
Sbjct: 17  LFRACSDASMVQQARQVHTQVIV-GGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELR 75

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KH 206
             + WN MI G    G  + AL  +  M      PD  +F  V+ AC  +  +      H
Sbjct: 76  YALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVH 135

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             + +  + +   +   + ++ L    G + +A  + +    R D+ LW V+L
Sbjct: 136 DTARSLGFHV--DLFAGSALIKLYADNGYIRDARRVFDELPLR-DTILWNVML 185


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 202/337 (59%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ V   V+  G+  N  + S+L+ MY KCG +  S R+FD M  ++ ++ +A +  
Sbjct: 235 LELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISA 294

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I +F  M+E     +  +   VL ACA + AL LGK++      R    D
Sbjct: 295 YAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHD 354

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT- 176
           + + +AL+D+YAKCG ++ A ++F  MP +N  +WN+MIS  A +G+ +EAL +F+ M+ 
Sbjct: 355 IFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSD 414

Query: 177 EGGT-KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           EGG+ +P+ ++F+ +LSAC H GL+D G + F  M+  + + PKIEHY+CMVDLL RAG 
Sbjct: 415 EGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGH 474

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L EA  +IE    + D+     L  AC   +N  + ERV + ++EL P    +Y++   +
Sbjct: 475 LYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKI 534

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           Y  +  W+DA ++R LM+ +GV K PG SWIE  ++L
Sbjct: 535 YENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQL 571



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 168/324 (51%), Gaps = 20/324 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++  +  H +V  LGL  +    +S+V MY +CG    + +VFD++ +K+ VS ++LL G
Sbjct: 133 IRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSG 192

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y + G     + +F  + E      D  S   VL AC  L  L LG+ V    + R    
Sbjct: 193 YAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKV 252

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  I SAL+ +Y+KCG +  + +IF  MP R+ ITWN+ IS +AQNG  +EA+ +F  M 
Sbjct: 253 NSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK 312

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGR 232
           E G  P+ V+   VLSAC+ +G +D G++       EY     ++H       ++D+  +
Sbjct: 313 ENGVDPNKVTLTAVLSACASIGALDLGKQ-----MDEYATHRGLQHDIFVATALIDMYAK 367

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA----ERVAKKIMELKPDCHLS 288
            G LE A+ +  +   ++D+S W  ++ A  +   A  A    ER++ +    +P+  ++
Sbjct: 368 CGSLESAQRVFNDMPRKNDAS-WNAMISALASHGKAKEALSLFERMSDEGGSARPN-DIT 425

Query: 289 YVLLDNVYRAVGRWNDAFKIRTLM 312
           +V L +     G  ++ +++  +M
Sbjct: 426 FVSLLSACVHAGLVDEGYRLFDMM 449



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 83/143 (58%), Gaps = 5/143 (3%)

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
           D+   + ++ +M+ +++    F+F  V  ACA L  +R+ +  HC+  +     D    +
Sbjct: 97  DYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVN 156

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTK 181
           ++V +Y +CG    A ++F ++  ++L++WNS++SG+A+ G   EA+ +F  +  E G +
Sbjct: 157 SMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFE 216

Query: 182 PDHVSFIGVLSACSHMGLIDRGR 204
           PD +S + VL AC  +G ++ GR
Sbjct: 217 PDEMSLVSVLGACGELGDLELGR 239


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 207/336 (61%), Gaps = 14/336 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS--VSSSALLQGY 62
           G+  H +++ +G   ++++++ L+D Y K G V+E+  +FD M ++NS  V+ + ++  Y
Sbjct: 49  GEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAY 108

Query: 63  CQTGDFESVIRIFREME-------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            Q G+F + I +F++M+       E+ + S   +L ACA L AL +G+ +H  YIR    
Sbjct: 109 VQCGEFGTAISMFQQMQSENVKPTEVTMVS---LLSACAHLGALDMGEWIH-GYIRTKRL 164

Query: 116 K-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
           K DV++ +AL+D+Y KCG ++ A  +F  +  +N+  WNS+I G   NGRGEEA+  F  
Sbjct: 165 KIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIV 224

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M + G KPD V+F+G+LS CSH GL+  G+++F+ M   Y ++P +EHY CMVDLLGRAG
Sbjct: 225 MEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAG 284

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L+EA  LI     + +S +   LL AC   ++  + E+V ++++EL P    +YV L N
Sbjct: 285 YLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSN 344

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           +Y ++ RW+D    R LM   GV K PG S IE N+
Sbjct: 345 LYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNN 380



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 3/157 (1%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           SF ++LR+CA     +LG+  HCQ ++     D+I+++ L+D YAK G V+ A  +F  M
Sbjct: 32  SFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNM 91

Query: 145 PVR--NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
             R  N +TWN+MIS + Q G    A+ +F  M     KP  V+ + +LSAC+H+G +D 
Sbjct: 92  TERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDM 151

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           G +      +  R+K  +   N ++D+  + G LE A
Sbjct: 152 G-EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAA 187



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 9/162 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H  + T  L  +VV+ ++L+DMY KCG ++ +  VF  + +KN    ++++ G
Sbjct: 149 LDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVG 208

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  I  F  ME    + D  +F  +L  C+    L  G+    + +   G + 
Sbjct: 209 LGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEP 268

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
            +     +VDL  + G +  A ++   MP++     NSM+ G
Sbjct: 269 GVEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 306


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 192/330 (58%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH+  +   L  ++ V S LVDMY KCG +  +  +F+KM +++ V  ++++ G
Sbjct: 156 LDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISG 215

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                  +     F++M E  +     S+  ++ +C+ L+++  G+++H Q ++    ++
Sbjct: 216 LTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQN 275

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YAKCG +D A   F  M ++N++ WN MI G+AQNG G++A+ +F+ M  
Sbjct: 276 VYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLT 335

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+FI VL+ CSH GL+D+    F SM   Y I P  EHY C++D LGRAG   
Sbjct: 336 TEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFV 395

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E E LI    C+ D  +WEVLL AC    NA + +  A+ +  + P     YVLL N+Y 
Sbjct: 396 EVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYA 455

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           ++GR  DA  +R LM   GV K  G SWI+
Sbjct: 456 SLGRHGDASAVRALMSNRGVVKGRGYSWID 485



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 123/243 (50%), Gaps = 5/243 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           EV + +   G   N V  S+L+    K   V  +  +FDK+ + +  + + LL GYCQ  
Sbjct: 60  EVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEE 119

Query: 67  DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             +  I +FR M+    + D  +  ++L +C+ L  L  G++VH   +R     D+ + S
Sbjct: 120 QHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVAS 179

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            LVD+Y+KCG +  A  IF +M  R+++ WNS+ISG   +   +EA   F  M E G  P
Sbjct: 180 GLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMP 239

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
              S+  ++++CS +  I  GR+  A + K+      +   + ++D+  + G +++A   
Sbjct: 240 TESSYASMINSCSRLSSIPHGRQIHAQVMKD-GYDQNVYVGSALIDMYAKCGNMDDARLF 298

Query: 243 IEN 245
            + 
Sbjct: 299 FDT 301



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 35/242 (14%)

Query: 23  VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEID 82
           V +SL+DMY KC  +DE+ +VF+ +     VS + L+ G+ Q G     + +   M+E  
Sbjct: 10  VGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQE-- 67

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
                      AG                     + +  S L+    K   V  A  +F 
Sbjct: 68  -----------AGFE------------------PNEVTYSNLLASCIKARDVHSARAMFD 98

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           ++   ++ TWN+++SG+ Q  + ++ + +F  M     +PD  +   +LS+CS +G++D 
Sbjct: 99  KISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDF 158

Query: 203 GRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           GR+ H AS+   + +   +   + +VD+  + G +  A ++  N     D   W  ++  
Sbjct: 159 GRQVHSASV--RFLLHNDMFVASGLVDMYSKCGQIGIARSIF-NKMTERDVVCWNSIISG 215

Query: 262 CT 263
            T
Sbjct: 216 LT 217



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 81/158 (51%), Gaps = 12/158 (7%)

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
           R+    D  + ++L+D+Y KC  +D A ++F  +P   +++WN +I+GF Q G   +A+ 
Sbjct: 1   RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVE 60

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +   M E G +P+ V++  +L++C     +   R  F  ++     +P +  +N +  L 
Sbjct: 61  VLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKIS-----RPSVTTWNTL--LS 113

Query: 231 GRAGLLEEAETL-----IENADCRHDSSLWEVLLGACT 263
           G     +  +T+     +++ + + D +   V+L +C+
Sbjct: 114 GYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCS 151


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/333 (37%), Positives = 200/333 (60%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++HA  +      +V V S+L+DMY +CG +D +  VFDK+  KN VS +AL+ G+ +
Sbjct: 171 GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFAR 230

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD E+ + +F EM+    E   F++  +    AG+ AL  GK VH   ++        +
Sbjct: 231 KGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFV 290

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + ++D+YAK G +  A ++F ++  ++L+TWNSM++ FAQ G G+EA+  F++M + G 
Sbjct: 291 GNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGI 350

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             + ++F+ +L+ACSH GL+  G KH+  M KEY ++P+IEHY  +VDLLGRAGLL  A 
Sbjct: 351 YLNQITFLCILTACSHGGLVKEG-KHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYAL 409

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I        +++W  LL AC   +NA V +  A  + +L PD     VLL N+Y + G
Sbjct: 410 VFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTG 469

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            W+ A ++R +MK +GVKK P  SW+E  + ++
Sbjct: 470 HWDAAARVRKMMKATGVKKEPACSWVEIGNSVH 502



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 146/268 (54%), Gaps = 6/268 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   +++H  + +    G+  +++SL+ +Y KCG V E+H+VFDKM KK+ VS ++L+ G
Sbjct: 67  LDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAG 126

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q       I +   M     + + F+F  +L+A    A   +G ++H   ++    +D
Sbjct: 127 YAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHED 186

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YA+CG +D A  +F ++  +N ++WN++ISGFA+ G GE AL +F +M  
Sbjct: 187 VYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQR 246

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +  H ++  + S  + +G +++G+   A M K  R K      N M+D+  ++G + 
Sbjct: 247 NGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKS-RQKLTAFVGNTMLDMYAKSGSMI 305

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTF 265
           +A  + E      D   W  +L A   +
Sbjct: 306 DARKVFERV-LNKDLVTWNSMLTAFAQY 332



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 90/189 (47%), Gaps = 15/189 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VHA ++         V ++++DMY K G + ++ +VF+++L K+ V+ +++L  
Sbjct: 269 LEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTA 328

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +  +  F EM +  ++    +F  +L AC+    ++ GK         +   +
Sbjct: 329 FAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPE 388

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +     +VDL  + G +++A     +MP+      W ++++          A R+  +  
Sbjct: 389 IEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLA----------ACRMHKNAK 438

Query: 177 EGGTKPDHV 185
            G    DHV
Sbjct: 439 VGQFAADHV 447


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 192/330 (58%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH+  +   L  ++ V S LVDMY KCG +  +  +F+KM +++ V  ++++ G
Sbjct: 433 LDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISG 492

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                  +     F++M E  +     S+  ++ +C+ L+++  G+++H Q ++    ++
Sbjct: 493 LTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQN 552

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YAKCG +D A   F  M ++N++ WN MI G+AQNG G++A+ +F+ M  
Sbjct: 553 VYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLT 612

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+FI VL+ CSH GL+D+    F SM   Y I P  EHY C++D LGRAG   
Sbjct: 613 TEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFV 672

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E E LI    C+ D  +WEVLL AC    NA + +  A+ +  + P     YVLL N+Y 
Sbjct: 673 EVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYA 732

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           ++GR  DA  +R LM   GV K  G SWI+
Sbjct: 733 SLGRHGDASAVRALMSNRGVVKGRGYSWID 762



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 142/279 (50%), Gaps = 24/279 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+  H   + +GL  N  VE++L+ MY KCG V ++ R+F  M + N VS +A++ G
Sbjct: 157 LGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGG 216

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAA--------LRLGKEVHCQY 109
             QTG  +  +R+F  M      +D  S   VL ACA   A         RLG+ +H   
Sbjct: 217 LAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALV 276

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           +R+    D  + ++L+D+Y KC  +D A ++F  +P   +++WN +I+GF Q G   +A+
Sbjct: 277 VRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAV 336

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            +   M E G +P+ V++  +L++C     +   R  F  ++     +P +  +N +  L
Sbjct: 337 EVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKIS-----RPSVTTWNTL--L 389

Query: 230 LGRAGLLEEAETL-----IENADCRHDSSLWEVLLGACT 263
            G     +  +T+     +++ + + D +   V+L +C+
Sbjct: 390 SGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCS 428



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 123/243 (50%), Gaps = 5/243 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           EV + +   G   N V  S+L+    K   V  +  +FDK+ + +  + + LL GYCQ  
Sbjct: 337 EVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEE 396

Query: 67  DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             +  I +FR M+    + D  +  ++L +C+ L  L  G++VH   +R     D+ + S
Sbjct: 397 QHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVAS 456

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            LVD+Y+KCG +  A  IF +M  R+++ WNS+ISG   +   +EA   F  M E G  P
Sbjct: 457 GLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMP 516

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
              S+  ++++CS +  I  GR+  A + K+      +   + ++D+  + G +++A   
Sbjct: 517 TESSYASMINSCSRLSSIPHGRQIHAQVMKD-GYDQNVYVGSALIDMYAKCGNMDDARLF 575

Query: 243 IEN 245
            + 
Sbjct: 576 FDT 578



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 123/292 (42%), Gaps = 46/292 (15%)

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT-GDFESVIRIFREMEEIDL----FSFG 87
           + G +D +  +   M ++N+VS + ++    ++ GD    + ++  M    L    F+  
Sbjct: 86  RAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLA 145

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
            VL AC GLAAL  G+  H   ++     +  +E+AL+ +Y KCG V  A ++F  M   
Sbjct: 146 SVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARP 205

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG---- 203
           N +++ +M+ G AQ G  ++ALR+F  M   G   D VS   VL AC+     D      
Sbjct: 206 NEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARA 265

Query: 204 ------------RKHFAS--------------------MTKEYRIKPKIE--HYNCMVDL 229
                       RK F S                      K +   P +    +N ++  
Sbjct: 266 FRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITG 325

Query: 230 LGRAGLLEEAE---TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
            G+ G   +A    +L++ A    +   +  LL +C   R+ H A  +  KI
Sbjct: 326 FGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKI 377


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 200/333 (60%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+V       GL  N  V +S++ M+ KC  ++++   F+ + +KN VS +  L G C+
Sbjct: 392 GKQVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCR 451

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             DFE    +  E+ E +L    F+F  +L   A + +LR G+++H Q ++     +  +
Sbjct: 452 NLDFEHAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPV 511

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+ +Y+KCG +D A ++F  M  RN+I+W SMI+GFA++G  E  L  F+ MT+ G 
Sbjct: 512 CNALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGV 571

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ V+++ +LSACSH+GL+  G +HF SM ++++IKPK+EHY CMVDLL RAGLL +A 
Sbjct: 572 KPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAF 631

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I     + D  +W   LGAC    N  + +  A+KI+E  P+   +Y+ L N+Y + G
Sbjct: 632 EFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAG 691

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W ++ ++R  MK   + K  G SWIE   K++
Sbjct: 692 KWEESTEMRRKMKERNLVKEGGCSWIEVGDKVH 724



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 104/188 (55%), Gaps = 12/188 (6%)

Query: 20  NVVVESSLVDMYGKC-GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
           +V V  SL+DM+ K     + +++VFDKM + N V+ + ++    Q G     IR F +M
Sbjct: 201 DVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDM 260

Query: 79  E----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC--- 131
                E D F+   V  ACA L  L LG+++H   IR     DV  E +LVD+YAKC   
Sbjct: 261 VLSGFESDKFTLSSVFSACAELENLSLGRQLHSWAIRSGLADDV--ECSLVDMYAKCSAD 318

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQN-GRGEEALRIFDDM-TEGGTKPDHVSFIG 189
           G VD   ++F +M   ++++W ++I+G+ QN     EA+ +F +M T+G  +P+H +F  
Sbjct: 319 GSVDDCRKVFDRMQDHSVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSS 378

Query: 190 VLSACSHM 197
              AC ++
Sbjct: 379 AFKACGNV 386



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 153/313 (48%), Gaps = 22/313 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSAL 58
           L  G+++H+  I  GL  +V  E SLVDMY KC   G VD+  +VFD+M   + +S +AL
Sbjct: 285 LSLGRQLHSWAIRSGLADDV--ECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTAL 342

Query: 59  LQGYCQTGDFES-VIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           + GY Q  +  +  I +F EM      E + F+F    +AC  ++  R+GK+V     +R
Sbjct: 343 ITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKR 402

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               +  + ++++ ++ KC  ++ A   F  +  +NL+++N+ + G  +N   E A  + 
Sbjct: 403 GLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELL 462

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            ++ E        +F  +LS  +++G + +G +  + + K   +       N ++ +  +
Sbjct: 463 SEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLK-LGLSCNQPVCNALISMYSK 521

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL-----KPDCHL 287
            G ++ A  +    D R+  S W  ++   T F     AERV +   ++     KP+  +
Sbjct: 522 CGSIDTASRVFSLMDNRNVIS-WTSMI---TGFAKHGFAERVLETFNQMTKEGVKPN-EV 576

Query: 288 SYVLLDNVYRAVG 300
           +YV + +    VG
Sbjct: 577 TYVAILSACSHVG 589



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 114/214 (53%), Gaps = 11/214 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML---KKNSVSSSAL 58
            + GK VHA++I   +  + V+ +SL+ +Y K G + ++  VF+ M    K++ VS SA+
Sbjct: 78  FRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAM 137

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           +  +   G     I++F E  E+ L    + +  V+RAC+    + +G+ V   ++ ++G
Sbjct: 138 MACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGR-VILGFLMKTG 196

Query: 115 C--KDVIIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
               DV +  +L+D++ K     + A+++F +M   N++TW  MI+   Q G   EA+R 
Sbjct: 197 HFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRF 256

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           F DM   G + D  +   V SAC+ +  +  GR+
Sbjct: 257 FLDMVLSGFESDKFTLSSVFSACAELENLSLGRQ 290



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 3/130 (2%)

Query: 78  MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
           +  +D  +F  +L++C      RLGK VH + I      D ++ ++L+ LY+K G +  A
Sbjct: 57  IRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKA 116

Query: 138 HQIFLQM---PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
             +F  M     R++++W++M++ F  NGR  +A+++F +  E G  P+   +  V+ AC
Sbjct: 117 KDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRAC 176

Query: 195 SHMGLIDRGR 204
           S+   +  GR
Sbjct: 177 SNSDFVGVGR 186



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 86/161 (53%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G+++H++V+ LGL  N  V ++L+ MY KCG +D + RVF  M  +N +S ++++ G
Sbjct: 490 LRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITG 549

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLG-KEVHCQYIRRSGCK 116
           + + G  E V+  F +M     + +  ++  +L AC+ +  +  G +  +  Y       
Sbjct: 550 FAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            +   + +VDL  + G +  A +    MP + +++ W + +
Sbjct: 610 KMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/340 (37%), Positives = 213/340 (62%), Gaps = 5/340 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+ +H+ VI  G    + V++SL+ +Y  CG V  +++VFDKM +K+ V+ ++++ G
Sbjct: 137 VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 196

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + + G  E  + ++ EM+    + D F+   +L ACA + AL LGK  H   I+    ++
Sbjct: 197 FAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRN 256

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           +   + L+DLYA+CG V+ A  +F +M  +N ++W S+I G A NG G+EA+ +F +M +
Sbjct: 257 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMES 316

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G  P  ++F+G+L ACSH G++  G ++F  M++EY+I+P+IEH+ CMVDLL RAG +
Sbjct: 317 KEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQV 376

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           ++A   I     + +  +W  LLGACT   ++ +AE    KI++L+P+    YVLL N+Y
Sbjct: 377 KKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMY 436

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            +  RW+D  KIR  M   GV+K+PG S +E  ++++  L
Sbjct: 437 ASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFL 476



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 134/227 (59%), Gaps = 7/227 (3%)

Query: 40  SHRVFDKMLKK-NSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFGIVLRAC 93
           +H+VF K+ K  N    + L++GY + G+  S + ++REM      E D  ++  +L+A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAV 131

Query: 94  AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
             +A +RLG+ +H   IR      + ++++L+ LYA CG V  A+++F +MP ++L+ WN
Sbjct: 132 GKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           S+I+GFA+NG+ EEAL ++ +M   G KPD  + + +LSAC+ +G +  G++    M K 
Sbjct: 192 SVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIK- 250

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             +   +   N ++DL  R G +EEA+TL +    ++  S   +++G
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG 297


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 192/330 (58%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH+  +   L  ++ V S LVDMY KCG +  +  +F+KM +++ V  ++++ G
Sbjct: 140 LDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISG 199

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                  +     F++M E  +     S+  ++ +C+ L+++  G+++H Q ++    ++
Sbjct: 200 LTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQN 259

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YAKCG +D A   F  M ++N++ WN MI G+AQNG G++A+ +F+ M  
Sbjct: 260 VYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLT 319

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+FI VL+ CSH GL+D+    F SM   Y I P  EHY C++D LGRAG   
Sbjct: 320 TEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFV 379

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           E E LI    C+ D  +WEVLL AC    NA + +  A+ +  + P     YVLL N+Y 
Sbjct: 380 EVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYA 439

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           ++GR  DA  +R LM   GV K  G SWI+
Sbjct: 440 SLGRHGDASAVRALMSNRGVVKGRGYSWID 469



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 123/243 (50%), Gaps = 5/243 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           EV + +   G   N V  S+L+    K   V  +  +FDK+ + +  + + LL GYCQ  
Sbjct: 44  EVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEE 103

Query: 67  DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             +  I +FR M+    + D  +  ++L +C+ L  L  G++VH   +R     D+ + S
Sbjct: 104 QHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVAS 163

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            LVD+Y+KCG +  A  IF +M  R+++ WNS+ISG   +   +EA   F  M E G  P
Sbjct: 164 GLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMP 223

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
              S+  ++++CS +  I  GR+  A + K+      +   + ++D+  + G +++A   
Sbjct: 224 TESSYASMINSCSRLSSIPHGRQIHAQVMKD-GYDQNVYVGSALIDMYAKCGNMDDARLF 282

Query: 243 IEN 245
            + 
Sbjct: 283 FDT 285



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 72/142 (50%), Gaps = 12/142 (8%)

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           +Y KC  +D A ++F  +P   +++WN +I+GF Q G   +A+ +   M E G +P+ V+
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL---- 242
           +  +L++C     +   R  F  ++     +P +  +N +  L G     +  +T+    
Sbjct: 61  YSNLLASCIKARDVHSARAMFDKIS-----RPSVTTWNTL--LSGYCQEEQHQDTIELFR 113

Query: 243 -IENADCRHDSSLWEVLLGACT 263
            +++ + + D +   V+L +C+
Sbjct: 114 RMQHQNVQPDRTTLAVILSSCS 135


>gi|356574078|ref|XP_003555179.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g56570-like [Glycine max]
          Length = 598

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/332 (40%), Positives = 197/332 (59%), Gaps = 5/332 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VHA+V+  G   N+ V +S++DMY KC    E+ R+F  M  K++++ + L+ G+  
Sbjct: 233 GKQVHAEVVKHGFESNLPVMNSILDMYCKCHCESEAKRLFSVMTHKDTITWNTLIAGFEA 292

Query: 65  TGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI-I 120
               ES+    R + E    D FSF   + ACA LA L  G+++H   I RSG  + + I
Sbjct: 293 LDSRESLCIFSRMVSEGLXPDCFSFTSAVGACANLAVLYCGQQLH-GVIVRSGLDNYLEI 351

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+ +YAKCG +  + +IF +MP  NL++W SMI+G+  +G G++A+ +F++M   G 
Sbjct: 352 SNALIYMYAKCGNIADSRKIFSKMPCTNLVSWTSMINGYGDHGYGKDAVELFNEMIRSGI 411

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD + F+ VLSACSH GL+D G ++F  MT  Y I P IE Y C+VDL GRAG ++EA 
Sbjct: 412 KPDKMVFMAVLSACSHAGLVDEGLRYFRLMTSYYNITPDIEIYGCVVDLFGRAGRVKEAY 471

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LIEN     D S+W  LLGAC       VA+  A + +++KP    +Y L+ N+Y A G
Sbjct: 472 QLIENMPFNPDESIWAALLGACKVHNQPSVAKFAALRALDMKPISAGTYALISNIYAAEG 531

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            W+D      L +    K   G+SWIE   ++
Sbjct: 532 NWDDFASSTKLRRGIKNKSDSGRSWIELKDQI 563



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 141/256 (55%), Gaps = 10/256 (3%)

Query: 2   LKQGKEVHAKVITLGLCGN-VVVESSLVDMYGKC-GLVDESHRVFDKMLKKNSVSSSALL 59
           L  G+ VH+  I +G+ G+ V V++SL+DMY  C   +D +  VFD +  K  V  + L+
Sbjct: 127 LSCGQLVHSLAIKIGVQGSSVYVDNSLMDMYATCCDSMDRARMVFDDITTKTDVCWTTLI 186

Query: 60  QGYCQTGDFESVIRIFREM--EE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY   GD    +R+FR+M  EE  + LFSF I  RACA + +  LGK+VH + ++    
Sbjct: 187 TGYTHRGDAYGGLRVFRQMFLEEGALSLFSFSIAARACASIGSGILGKQVHAEVVKHGFE 246

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF-AQNGRGEEALRIFDD 174
            ++ + ++++D+Y KC C   A ++F  M  ++ ITWN++I+GF A + R  E+L IF  
Sbjct: 247 SNLPVMNSILDMYCKCHCESEAKRLFSVMTHKDTITWNTLIAGFEALDSR--ESLCIFSR 304

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G  PD  SF   + AC+++ ++  G++    + +   +   +E  N ++ +  + G
Sbjct: 305 MVSEGLXPDCFSFTSAVGACANLAVLYCGQQLHGVIVRS-GLDNYLEISNALIYMYAKCG 363

Query: 235 LLEEAETLIENADCRH 250
            + ++  +     C +
Sbjct: 364 NIADSRKIFSKMPCTN 379



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 108/252 (42%), Gaps = 18/252 (7%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGL 96
           + E H +FDKM ++N V+ +A++       +      +F +M           LR   G+
Sbjct: 78  IKEPHALFDKMPQRNVVTWTAMITSNNSRNNHMRAWSVFPQM-----------LR--DGV 124

Query: 97  AALRLGKEVHCQYIRRS-GCKDVIIESALVDLYAK-CGCVDFAHQIFLQMPVRNLITWNS 154
            AL  G+ VH   I+       V ++++L+D+YA  C  +D A  +F  +  +  + W +
Sbjct: 125 KALSCGQLVHSLAIKIGVQGSSVYVDNSLMDMYATCCDSMDRARMVFDDITTKTDVCWTT 184

Query: 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY 214
           +I+G+   G     LR+F  M          SF     AC+ +G    G++  A + K +
Sbjct: 185 LITGYTHRGDAYGGLRVFRQMFLEEGALSLFSFSIAARACASIGSGILGKQVHAEVVK-H 243

Query: 215 RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
             +  +   N ++D+  +     EA+ L  +     D+  W  L+       +       
Sbjct: 244 GFESNLPVMNSILDMYCKCHCESEAKRLF-SVMTHKDTITWNTLIAGFEALDSRESLCIF 302

Query: 275 AKKIME-LKPDC 285
           ++ + E L PDC
Sbjct: 303 SRMVSEGLXPDC 314


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 200/364 (54%), Gaps = 35/364 (9%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            L  G+++H  +  +GL   V + ++L+DMY KC  ++ +  +F+ M KK  VS + ++ 
Sbjct: 271 NLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVI 330

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIV------------------------------- 89
           GY + G  ES +R+F EM E D+  +  +                               
Sbjct: 331 GYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKIT 390

Query: 90  ----LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
               L AC+ L AL +G  +H    + +   +V + +ALVD+YAKCG +  A Q+F +MP
Sbjct: 391 VVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMP 450

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN +TW ++I G A +G+   A+  F +M   G  PD ++FIGVLSAC H GL+D+GR 
Sbjct: 451 GRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRD 510

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +F  MT +Y I PK++HY+C+VDLLGRAG LEEAE LI +     D+ +W  L       
Sbjct: 511 YFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIH 570

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N H+ ER A K++EL P     YVLL N+Y     W  A K+R +M+  GV+K PG S 
Sbjct: 571 GNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSS 630

Query: 326 IEAN 329
           IE N
Sbjct: 631 IEMN 634



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 143/305 (46%), Gaps = 43/305 (14%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
             E+   VI LG   ++ V ++++ +   CG +  + ++FD+   ++ VS ++++ GY +
Sbjct: 174 ANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVR 233

Query: 65  TGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCK-DVI 119
            G  +    ++ +M E+++    +    V+ A A L  L LG+++H Q I   G    V 
Sbjct: 234 CGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLH-QSIEEMGLNLTVP 292

Query: 120 IESALVDLYAKC-------------------------------GCVDFAHQIFLQMPVRN 148
           + +AL+D+Y KC                               G ++ A ++F +MP ++
Sbjct: 293 LANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKD 352

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG--RKH 206
           ++ WN++I GF Q  R +EAL +F +M      PD ++ +  LSACS +G +D G    H
Sbjct: 353 VVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHH 412

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           +     ++ +   +     +VD+  + G +++A  + E    R +S  W  ++       
Sbjct: 413 Y---VDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGR-NSLTWTAIICGLALHG 468

Query: 267 NAHVA 271
             H A
Sbjct: 469 QPHAA 473



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 129/254 (50%), Gaps = 14/254 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-----VDESHRVFDKMLKKNSVSSS 56
           + + KE+HA++I+ GL  +    S LV     C +     +D   ++ +     N  S +
Sbjct: 67  MAKMKEIHAQMISTGLISDGFALSRLVAF---CAISEWRNLDYCDKILNNAANLNVFSWN 123

Query: 57  ALLQGYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
             ++GY ++ +  + + ++R M        D +++ ++ + CAG +      E+    I+
Sbjct: 124 MAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQ 183

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                D+ + +A++ +   CG +  A ++F +  VR+L++WNS+I+G+ + G  +EA  +
Sbjct: 184 LGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDL 243

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           +  M E    PD V+ IGV+SA + +  +  GRK   S+ +E  +   +   N ++D+  
Sbjct: 244 YYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSI-EEMGLNLTVPLANALMDMYI 302

Query: 232 RAGLLEEAETLIEN 245
           +   +E A+ L EN
Sbjct: 303 KCKNIEAAKILFEN 316


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 130/341 (38%), Positives = 208/341 (60%), Gaps = 11/341 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H+ V+  GL  N VV ++LV+MYGK G +DE+ RVF  + +K+ VS +AL+  
Sbjct: 27  LRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTALMSA 86

Query: 62  YCQTGDFESVIRIFREME-------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y +   +   +++FREM        + D   F  +L+ACA L+A   G+  H + I+  G
Sbjct: 87  YSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAH-RRIQECG 145

Query: 115 --CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               D ++   ++++Y KCG +  AH++F  M  R+ + W ++ISG+A +G  EE+L +F
Sbjct: 146 YDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMF 205

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
             M + G+KPD VS + VLS CSH GL+++G   F  +TKE+ ++P  +HY CM+DLLGR
Sbjct: 206 WRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGR 265

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
           +G LE AE +I     +  +  W + L AC    +    +R A+K++EL+P    +YV L
Sbjct: 266 SGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDTERGKRAAEKVLELEP-VPAAYVSL 324

Query: 293 DNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            N+Y A G W+   ++R+ MK  G++K PG+S IE NS+++
Sbjct: 325 SNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEVNSRVH 365



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 4/127 (3%)

Query: 82  DLFSFGIVLRACAG-LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
           D   F   L AC G LA LRLGK +H   +      + ++ +ALV++Y K GC+D A ++
Sbjct: 9   DKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRV 68

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT---EGGTKPDHVSFIGVLSACSHM 197
           F  +  ++L++W +++S +++     EAL++F +MT     GTKPD   F  +L AC+ +
Sbjct: 69  FRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQACATL 128

Query: 198 GLIDRGR 204
                GR
Sbjct: 129 SAAAEGR 135


>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 198/305 (64%), Gaps = 4/305 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+  +  G+ G+V V  +L+DMY KCG ++++  VFD+M +K +V  ++++ GY  
Sbjct: 251 GRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYAL 310

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + ++ EM +    ID F+F I++R CA LA+L   K+ H   +R     D++ 
Sbjct: 311 HGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVA 370

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVDLY+K G ++ A  +F  MP +N+I+WN++I+G+  +GRG EA+ +F+ M   G 
Sbjct: 371 NTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGM 430

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+HV+F+ VLSACS+ GL DRG + F SM+++++IKP+  HY CM++LLGR GLL+EA 
Sbjct: 431 VPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAF 490

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LI++A  +   ++W  LL AC   +N  + +  A+K+  + P+   +YV+L N+Y   G
Sbjct: 491 ALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSG 550

Query: 301 RWNDA 305
           R  +A
Sbjct: 551 RLEEA 555



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 153/289 (52%), Gaps = 5/289 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K+V   +I  GL  +  + + ++ M+ KCG++ ++ R+FD+M +KN +S + ++ G    
Sbjct: 151 KKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDA 210

Query: 66  GDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           GD+    R+F    ++  +     F  ++RA AGL  +  G+++H   ++     DV + 
Sbjct: 211 GDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVA 270

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
            AL+D+Y+KCG ++ A  +F QMP +  + WNS+I+G+A +G  EEAL ++ +M + G K
Sbjct: 271 CALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVK 330

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D+ +F  ++  C+ +  ++  ++  A + + +     I     +VDL  + G +E+A+ 
Sbjct: 331 IDNFTFSIIIRICARLASLEHAKQAHAGLVR-HGFGLDIVANTALVDLYSKWGRIEDAKH 389

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYV 290
           + +    ++  S   ++ G     R     E   + + E     H++++
Sbjct: 390 VFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFL 438



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 107/218 (49%), Gaps = 14/218 (6%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFGIVLR 91
           V +  +V +  L+K S      ++       +   + +F  +E     ++D  ++  ++ 
Sbjct: 80  VGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVS 139

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
           AC GL ++R  K+V    I      D  + + ++ ++ KCG +  A ++F +MP +N+++
Sbjct: 140 ACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILS 199

Query: 152 WNSMISGFAQNGRGEEALRIF----DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           WN++I G    G   EA R+F     D ++ G++     F+ ++ A + +GLI  GR+  
Sbjct: 200 WNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSR----MFVTMIRASAGLGLIFAGRQ-L 254

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
            S + +  +   +     ++D+  + G +E+A+ + + 
Sbjct: 255 HSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQ 292


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 200/364 (54%), Gaps = 35/364 (9%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            L  G+++H  +  +GL   V + ++L+DMY KC  ++ +  +F+ M KK  VS + ++ 
Sbjct: 271 NLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVI 330

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIV------------------------------- 89
           GY + G  ES +R+F EM E D+  +  +                               
Sbjct: 331 GYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKIT 390

Query: 90  ----LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
               L AC+ L AL +G  +H    + +   +V + +ALVD+YAKCG +  A Q+F +MP
Sbjct: 391 VVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMP 450

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN +TW ++I G A +G+   A+  F +M   G  PD ++FIGVLSAC H GL+D+GR 
Sbjct: 451 GRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRD 510

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +F  MT +Y I PK++HY+C+VDLLGRAG LEEAE LI +     D+ +W  L       
Sbjct: 511 YFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIH 570

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N H+ ER A K++EL P     YVLL N+Y     W  A K+R +M+  GV+K PG S 
Sbjct: 571 GNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSS 630

Query: 326 IEAN 329
           IE N
Sbjct: 631 IEMN 634



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 143/305 (46%), Gaps = 43/305 (14%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
             E+   VI LG   ++ V ++++ +   CG +  + ++FD+   ++ VS ++++ GY +
Sbjct: 174 ANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVR 233

Query: 65  TGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCK-DVI 119
            G  +    ++ +M E+++    +    V+ A A L  L LG+++H Q I   G    V 
Sbjct: 234 CGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLH-QSIEEMGLNLTVP 292

Query: 120 IESALVDLYAKC-------------------------------GCVDFAHQIFLQMPVRN 148
           + +AL+D+Y KC                               G ++ A ++F +MP ++
Sbjct: 293 LANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKD 352

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG--RKH 206
           ++ WN++I GF Q  R +EAL +F +M      PD ++ +  LSACS +G +D G    H
Sbjct: 353 VVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHH 412

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           +     ++ +   +     +VD+  + G +++A  + E    R +S  W  ++       
Sbjct: 413 Y---VDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGR-NSLTWTAIICGLALHG 468

Query: 267 NAHVA 271
             H A
Sbjct: 469 QPHAA 473



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 129/254 (50%), Gaps = 14/254 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-----VDESHRVFDKMLKKNSVSSS 56
           + + KE+HA++I+ GL  +    S LV     C +     +D   ++ +     N  S +
Sbjct: 67  MAKMKEIHAQMISTGLISDGFALSRLVAF---CAISEWRNLDYCDKILNNAANLNXFSWN 123

Query: 57  ALLQGYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
             ++GY ++ +  + + ++R M        D +++ ++ + CAG +      E+    I+
Sbjct: 124 MAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQ 183

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                D+ + +A++ +   CG +  A ++F +  VR+L++WNS+I+G+ + G  +EA  +
Sbjct: 184 LGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDL 243

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           +  M E    PD V+ IGV+SA + +  +  GRK   S+ +E  +   +   N ++D+  
Sbjct: 244 YYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSI-EEMGLNLTVPLANALMDMYI 302

Query: 232 RAGLLEEAETLIEN 245
           +   +E A+ L EN
Sbjct: 303 KCKNIEAAKILFEN 316


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/341 (39%), Positives = 207/341 (60%), Gaps = 14/341 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G++VH+ +   G   N+ + ++L+D+Y KCG V+ +  + + +  K+ +S + L+ G
Sbjct: 223 IELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGG 282

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y     ++  + +F+EM    E  +  +   +L ACA L A+ +G+ +H  YI +   K 
Sbjct: 283 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV-YIDKK-LKG 340

Query: 118 VIIESA------LVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALR 170
           V++ +A      L+D+YAKCG +D A Q+       R+L TWN+MI GFA +GR   A  
Sbjct: 341 VVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFD 400

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           IF  M + G +PD ++F+G+LSACSH G++D GR  F SM ++Y I PK+EHY CM+DLL
Sbjct: 401 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLL 460

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYV 290
           G +GL +EAE +I       D  +W  LL AC    N  + E  AKK+++++P+   SYV
Sbjct: 461 GHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYV 520

Query: 291 LLDNVYRAVGRWNDAFKIRTLMKYSGV-KKMPGKSWIEANS 330
           LL N+Y   G+WN+  KIRTL+   G+ KK+PG S IE +S
Sbjct: 521 LLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDS 561



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 161/323 (49%), Gaps = 40/323 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD---------------- 45
            K+G+++H  V+ LG   ++ V +SL+ MY + G ++++ +VFD                
Sbjct: 91  FKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITG 150

Query: 46  -----------KMLK----KNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSF 86
                      KM      K+ VS +A++ GY +TG+++  + +F+EM +     D  + 
Sbjct: 151 YASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTM 210

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             V+ ACA   ++ LG++VH          ++ I +AL+DLY+KCG V+ A ++   +  
Sbjct: 211 ATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSN 270

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           +++I+WN++I G+      +EAL +F +M   G  P+ V+ + +L AC+H+G ID GR  
Sbjct: 271 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 330

Query: 207 FASMTKEYR---IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
              + K+ +   +         ++D+  + G ++ A  + +++      S W  ++    
Sbjct: 331 HVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFA 390

Query: 264 TFRNAHVAERVAKKIME--LKPD 284
               A+ A  +  ++ +  ++PD
Sbjct: 391 MHGRANAAFDIFSRMRKNGIEPD 413



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 128/256 (50%), Gaps = 37/256 (14%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAA 98
           VF+ + + N +  + + +G+  + D  S ++++  M  + L    F+F  +L++CA    
Sbjct: 31  VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90

Query: 99  LRLGKEVHCQYIR-------------------------------RSGCKDVIIESALVDL 127
            + G+++H   ++                               RS  +DV+  +AL+  
Sbjct: 91  FKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITG 150

Query: 128 YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187
           YA  G ++ A ++F ++P++++++WN+MISG+A+ G  ++AL +F +M +   KPD  + 
Sbjct: 151 YASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTM 210

Query: 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
             V+SAC+  G I+ GR+   S   ++     ++  N ++DL  + G +E A  L+E   
Sbjct: 211 ATVVSACAQSGSIELGRQ-VHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLS 269

Query: 248 CRHDSSLWEVLLGACT 263
            + D   W  L+G  T
Sbjct: 270 NK-DVISWNTLIGGYT 284


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/319 (40%), Positives = 194/319 (60%), Gaps = 7/319 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           +V+  ++++  Y   G V+    +F++M ++N  S +AL+ GY   G F  V+  F+ M 
Sbjct: 105 DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRML 164

Query: 79  EEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGC 133
            E D+     +   VL ACA L AL LGK VH  Y   SG K +V + +AL+D+YAKCG 
Sbjct: 165 SESDVPPNDATLVTVLSACARLGALDLGKWVHV-YAESSGLKGNVYVGNALMDMYAKCGI 223

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           ++ A  +F  M  ++LI+WN++I G A + RG +AL +F  M   G KPD ++FIG+L A
Sbjct: 224 IENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCA 283

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+HMGL++ G  +F SM  +Y I P+IEHY CMVD+L RAG LE+A   +       D  
Sbjct: 284 CTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGV 343

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           +W  LLGAC  ++N  +AE   ++++EL+P    +YV+L N+Y   GRW D  +++  M+
Sbjct: 344 IWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMR 403

Query: 314 YSGVKKMPGKSWIEANSKL 332
            +G KK+PG S IE N  +
Sbjct: 404 DTGFKKLPGCSLIEVNDAV 422



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 115/254 (45%), Gaps = 41/254 (16%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAAL 99
           + ++FD++   N    +++ +GY Q+   ES   IF EM E ++ ++  ++      A L
Sbjct: 4   ARQLFDQIPDPNIALWNSMFRGYAQS---ESYREIFCEMFERNVVAWTSMINGYILSADL 60

Query: 100 RLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF 159
              + +      R    DV++ + +V  Y + G +  A ++F +MP R+++ WN+++ G+
Sbjct: 61  VSARRLFDLAPER----DVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGY 116

Query: 160 AQNGRGEEALRIFDDMTE----------GG----------------------TKPDHVSF 187
           A NG  E    +F++M E          GG                        P+  + 
Sbjct: 117 ATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 176

Query: 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
           + VLSAC+ +G +D G K      +   +K  +   N ++D+  + G++E A ++    D
Sbjct: 177 VTVLSACARLGALDLG-KWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMD 235

Query: 248 CRHDSSLWEVLLGA 261
            + D   W  L+G 
Sbjct: 236 TK-DLISWNTLIGG 248



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH    + GL GNV V ++L+DMY KCG+++ +  VF  M  K+ +S + L+ G
Sbjct: 189 LDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGG 248

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                     + +F +M    ++ D  +F  +L AC  +  +  G         +S   D
Sbjct: 249 LAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYF-----QSMADD 303

Query: 118 VIIESA------LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            +I         +VD+ A+ G ++ A     +MPV  + + W  ++
Sbjct: 304 YLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLL 349


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 201/336 (59%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   +E+H++V+  G   +++V+++LV MY KCG + ++ +VFD M +++ VS SA++  
Sbjct: 380 LSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGA 439

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  E     F  M+    E D+ ++  +L AC  L AL LG E++ Q I+      
Sbjct: 440 YVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSH 499

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+++  K G ++ A  IF  M  R+++TWN MI G++ +G   EAL +FD M +
Sbjct: 500 IPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLK 559

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +P+ V+F+GVLSACS  G ++ GR+ F+ +     I P +E Y CMVDLLGRAG L+
Sbjct: 560 ERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELD 619

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE LI     + +SS+W  LL AC  + N  VAER A++ +  +P     YV L ++Y 
Sbjct: 620 EAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYA 679

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G W +  K+R +M+  GV+K  G +WIE   KL+
Sbjct: 680 AAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLH 715



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 154/274 (56%), Gaps = 6/274 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VHA+ +  GL  +V V ++L+ MY  CG ++ + RVFDKM  ++ VS + +++G
Sbjct: 279 LAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRG 338

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +  + E    +F  M+E     D  ++  ++ ACA  A L L +E+H Q +R     D
Sbjct: 339 YAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTD 398

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +++++ALV +YAKCG +  A Q+F  M  R++++W++MI  + +NG GEEA   F  M  
Sbjct: 399 LLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKR 458

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              +PD V++I +L+AC H+G +D G + +    K   +   I   N ++++  + G +E
Sbjct: 459 NNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKA-DLVSHIPVGNALINMNVKHGSIE 517

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
            A  + EN   + D   W V++G  +   NA  A
Sbjct: 518 RARYIFENM-VQRDVVTWNVMIGGYSLHGNAREA 550



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 176/343 (51%), Gaps = 21/343 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GKE HA+VI +G   +  + ++LV MY K G +D + +VFD + K++  + + ++ G
Sbjct: 178 LKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGG 237

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y ++GD E   ++F  M++     +  SF  +L  C+   AL  GK VH Q +      D
Sbjct: 238 YAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDD 297

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+ +Y  CG ++ A ++F +M VR++++W  MI G+A+N   E+A  +F  M E
Sbjct: 298 VRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQE 357

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD +++I +++AC+    +   R+  + + +       +     +V +  + G ++
Sbjct: 358 EGIQPDRITYIHIINACASSADLSLAREIHSQVVRA-GFGTDLLVDTALVHMYAKCGAIK 416

Query: 238 EAETLIENADCRHDSSLWEVLLGACT-------TFRNAHVAERVAKKIMELKPDCHLSYV 290
           +A  + + A  R D   W  ++GA          F   H+ +R       ++PD  ++Y+
Sbjct: 417 DARQVFD-AMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKR-----NNVEPDV-VTYI 469

Query: 291 LLDNVYRAVGRWNDAFKIRT-LMKYSGVKKMP-GKSWIEANSK 331
            L N    +G  +   +I T  +K   V  +P G + I  N K
Sbjct: 470 NLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVK 512



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 114/195 (58%), Gaps = 4/195 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+V   +I  G   N+   ++L+ ++  CG + E+ + FD +  K  V+ +A++ GY Q
Sbjct: 80  GKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQ 139

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +    +FR+M     E  + +F IVL AC+  A L+LGKE H Q I+     D  I
Sbjct: 140 LGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRI 199

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALV +Y K G +D A Q+F  +  R++ T+N MI G+A++G GE+A ++F  M + G 
Sbjct: 200 GTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGF 259

Query: 181 KPDHVSFIGVLSACS 195
           KP+ +SF+ +L  CS
Sbjct: 260 KPNRISFLSILDGCS 274



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE-S 122
           Q G  + + R+      ID  ++  + + C  L    LGK+V   +I +SG +  I E +
Sbjct: 42  QVGANDVLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVR-DHIIQSGRQLNIYELN 100

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            L+ L++ CG +  A Q F  +  + ++TWN++I+G+AQ G  +EA  +F  M +   +P
Sbjct: 101 TLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEP 160

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTK-----EYRIKPKIEHYNCMVDLLGRAGLLE 237
             ++F+ VL ACS    +  G++  A + K     ++RI         +V +  + G ++
Sbjct: 161 SIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIG------TALVSMYVKGGSMD 214

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A  + +    R D S + V++G 
Sbjct: 215 GARQVFDGLYKR-DVSTFNVMIGG 237


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/340 (39%), Positives = 197/340 (57%), Gaps = 12/340 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +HA  +  G   ++V+ ++ +DMYGKCG V  +  VFD    K+ +  SA++  
Sbjct: 344 LELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISS 403

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y Q    +    IF  M        E  + S   +L  CA   +L +GK +H  YI + G
Sbjct: 404 YAQNNCIDEAFDIFVHMTGCGIRPNERTMVS---LLMICAKAGSLEMGKWIH-SYIDKQG 459

Query: 115 CK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
            K D+I++++ VD+YA CG +D AH++F +   R++  WN+MISGFA +G GE AL +F+
Sbjct: 460 IKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFE 519

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           +M   G  P+ ++FIG L ACSH GL+  G++ F  M  E+   PK+EHY CMVDLLGRA
Sbjct: 520 EMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRA 579

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           GLL+EA  LI++   R + +++   L AC   +N  + E  AK+ + L+P      VL+ 
Sbjct: 580 GLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMS 639

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           N+Y +  RW D   IR  MK  G+ K PG S IE N  L+
Sbjct: 640 NIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLH 679



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 134/264 (50%), Gaps = 8/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGN--VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           LK GK +HA V+  G CG   V + ++L+DMY KC  +  + RVFD + K + +S +A++
Sbjct: 241 LKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMI 300

Query: 60  QGYCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGC 115
             Y    +    +R+F +M    +F   I +    + C    AL LGK +H   +R    
Sbjct: 301 AAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFT 360

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             +++ +A +D+Y KCG V  A  +F     ++L+ W++MIS +AQN   +EA  IF  M
Sbjct: 361 LSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHM 420

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           T  G +P+  + + +L  C+  G ++ G K   S   +  IK  +      VD+    G 
Sbjct: 421 TGCGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGD 479

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           ++ A  L   A  R D S+W  ++
Sbjct: 480 IDTAHRLFAEATDR-DISMWNAMI 502



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 137/267 (51%), Gaps = 16/267 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+EVH  V+  G  G+V V ++L+ MY + G +  +  +FDK+  K+ VS S +++ Y +
Sbjct: 143 GQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDR 202

Query: 65  TGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-- 115
           +G  +  + + R+M        EI + S   VL   A LA L+LGK +H   +R   C  
Sbjct: 203 SGLLDEALDLLRDMHVMRVKPSEIGMISITHVL---AELADLKLGKAMHAYVMRNGKCGK 259

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             V + +AL+D+Y KC  + +A ++F  +   ++I+W +MI+ +       E +R+F  M
Sbjct: 260 SGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKM 319

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G  P+ ++ + ++  C   G ++ G+  H  ++   + +   +      +D+ G+ G
Sbjct: 320 LGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLA--TAFIDMYGKCG 377

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
            +  A ++ ++   + D  +W  ++ +
Sbjct: 378 DVRSARSVFDSFKSK-DLMMWSAMISS 403



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 82/166 (49%), Gaps = 4/166 (2%)

Query: 51  NSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVH 106
           N+   S L+  Y +        +I+  M     E+D F    VL+AC  + +  LG+EVH
Sbjct: 88  NAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVH 147

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
              ++     DV + +AL+ +Y++ G +  A  +F ++  +++++W++MI  + ++G  +
Sbjct: 148 GFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLD 207

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           EAL +  DM     KP  +  I +    + +  +  G+   A + +
Sbjct: 208 EALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMR 253


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 206/363 (56%), Gaps = 38/363 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK++H     LG   +  ++++L++MY  CG +  + +VFDKM+ K+ VS + ++  
Sbjct: 91  LCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGA 150

Query: 62  YCQTGDFESVIRIFREME-EIDLFSFGIVLR----------------------------- 91
           Y Q       I++FR ME   +LF + I++                              
Sbjct: 151 YAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVT 210

Query: 92  ------ACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQM 144
                 AC  L AL LGK +H  YI +   + DV + +ALVD+YAKCG ++ A ++F +M
Sbjct: 211 MASLLIACTHLGALELGKWLHV-YIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEM 269

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P ++++TW ++I G A  G+G +AL +F +M     KPD ++F+GVL+ACSH GL++ G 
Sbjct: 270 PEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGI 329

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
            +F SM  +Y I+P IEHY CMVD+LGRAG + EAE LI+N     D  +   LL AC  
Sbjct: 330 AYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRI 389

Query: 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324
             N  VAER A++++EL P    +YVLL N+Y ++  W  A K+R LM    +KK PG S
Sbjct: 390 HGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCS 449

Query: 325 WIE 327
            IE
Sbjct: 450 AIE 452



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 91/213 (42%), Gaps = 13/213 (6%)

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
           C ++       ++   AL D     G + +A  +F Q+P     T NS+I G+       
Sbjct: 5   CLFVDPFSASKIVAFCALHD----SGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNC 225
           +A+  +  M   G  PD  +F  +  +C   G++  G++ H  S    +     I+  N 
Sbjct: 61  QAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQ--NT 115

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285
           ++++    G L  A  + +    +   S W  ++GA   +   H A ++ ++ ME+  + 
Sbjct: 116 LMNMYSNCGCLVSARKVFDKMVNKSVVS-WATMIGAYAQWDLPHEAIKLFRR-MEIASNL 173

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
              + ++ N +     + +A  +   M+ SGVK
Sbjct: 174 -FCWNIMINGHVEDSDYEEALSLFNEMQLSGVK 205


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/371 (38%), Positives = 208/371 (56%), Gaps = 41/371 (11%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML------------ 48
           R+  G+ VH + + +GL G+  V +SL+DMY KCG++ ++ ++FDKM+            
Sbjct: 122 RVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIA 181

Query: 49  -------------------KKNSVSSSALLQGYCQTGDFESVIRIFREMEE------IDL 83
                               +N VS +A++ GY Q G  E  + +F EM +       + 
Sbjct: 182 GYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNW 241

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIF- 141
            +   VL ACA  AAL  G+ +H  +    G   +  +++AL  +YAKC  +  A   F 
Sbjct: 242 VTIVSVLPACAQSAALERGRRIH-DFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFD 300

Query: 142 -LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
            +    +NLI WN+MI+ +A +G G EA+ IF++M   G +PD V+F+G+LS CSH GLI
Sbjct: 301 MIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLI 360

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           D G  HF  M   + ++P++EHY C+VDLLGRAG L EA+ LI     +   S+W  LL 
Sbjct: 361 DAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLA 420

Query: 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
           AC + RN  +AE  A+++  L+PD   +YVLL N+Y   G W +  K+R L+KY G+KK 
Sbjct: 421 ACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKS 480

Query: 321 PGKSWIEANSK 331
           PG SWIE N K
Sbjct: 481 PGCSWIEINGK 491



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 33/157 (21%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D F+   VL++CA L+ + +G+ VH Q +R     D  + ++L+D+Y KCG +  A ++F
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 165

Query: 142 LQMPV-------------------------------RNLITWNSMISGFAQNGRGEEALR 170
            +M V                               RN+++W +MISG+ QNG  E+AL 
Sbjct: 166 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALG 225

Query: 171 IFDDMTEGGT--KPDHVSFIGVLSACSHMGLIDRGRK 205
           +FD+M + G+  KP+ V+ + VL AC+    ++RGR+
Sbjct: 226 LFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRR 262


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/333 (38%), Positives = 201/333 (60%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA  +  G   +V V S+L+DMY +CG +D +  VFDK+  KN VS +AL+ G+ +
Sbjct: 171 GRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFAR 230

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD ES +  F EM     E   F++  V  + A L AL  GK VH   I+        +
Sbjct: 231 KGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFV 290

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L+D+YAK G +  A ++F ++  ++L+TWNSM++ FAQ G G+EA+  F++M + G 
Sbjct: 291 GNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGV 350

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             + ++F+ +L+ACSH GL+  G+++F  M KEY ++P+I+HY  +V LLGRAGLL  A 
Sbjct: 351 YLNQITFLCILTACSHGGLVKEGKRYF-EMMKEYDLEPEIDHYVTVVALLGRAGLLNYAL 409

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I        +++W  LL AC   +NA V +  A  + EL PD     VLL N+Y + G
Sbjct: 410 VFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTG 469

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W+ A ++R +MK +GVKK P  SW+E  + ++
Sbjct: 470 QWDAAARVRMMMKTTGVKKEPACSWVEMENSVH 502



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 147/268 (54%), Gaps = 6/268 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  +++HA + +    G+  +++SL+ MY KC  V ++  VFD+M +K+ VS ++L+ G
Sbjct: 67  LEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAG 126

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q       I +   M     + + F+F  +L+A    A    G+++H   ++    +D
Sbjct: 127 YAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHED 186

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YA+CG +D A  +F ++  +N ++WN++ISGFA+ G GE AL  F +M  
Sbjct: 187 VYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLR 246

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +  H ++  V S+ + +G +++G+   A + K  R K      N ++D+  ++G + 
Sbjct: 247 NGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKS-RQKLTAFVGNTLLDMYAKSGSMI 305

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTF 265
           +A  + +  D + D   W  +L A   +
Sbjct: 306 DARKVFDRVDNK-DLVTWNSMLTAFAQY 332



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 13/195 (6%)

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
            G+     R++R             + ACA    L   +++H          D  ++++L
Sbjct: 44  AGELAPTPRVYRSF-----------ITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSL 92

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           + +Y KC  V  A  +F QM  +++++W S+I+G+AQN    EA+ +   M +G  KP+ 
Sbjct: 93  IHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNG 152

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
            +F  +L A         GR+  A   K       +   + ++D+  R G ++ A  + +
Sbjct: 153 FTFASLLKAAGAYADSGTGRQIHALAVK-CGWHEDVYVGSALLDMYARCGKMDMATAVFD 211

Query: 245 NADCRHDSSLWEVLL 259
             D ++  S W  L+
Sbjct: 212 KLDSKNGVS-WNALI 225



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 15/189 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK VHA VI         V ++L+DMY K G + ++ +VFD++  K+ V+ +++L  
Sbjct: 269 LEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTA 328

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +  +  F EM +    ++  +F  +L AC+    ++ GK             +
Sbjct: 329 FAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPE 388

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +     +V L  + G +++A     +MP+      W ++++          A R+  +  
Sbjct: 389 IDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLA----------ACRMHKNAK 438

Query: 177 EGGTKPDHV 185
            G    DHV
Sbjct: 439 VGQFAADHV 447


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 200/336 (59%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K++H  +   GL  ++   S+L+ +Y  C  + +S  VFD+M  K+ V  +++  G
Sbjct: 470 LGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSG 529

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  + E  + +F E++      D F+F  ++ A   LA+L+LG+E HCQ ++R    +
Sbjct: 530 YVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECN 589

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I +AL+D+YAKCG  + AH+ F     R+++ WNS+IS +A +G G +AL++ + M  
Sbjct: 590 PYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMC 649

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P++++F+GVLSACSH GL++ G K F  M + + I+P+ EHY CMV LLGRAG L 
Sbjct: 650 EGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLN 708

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LIE    +  + +W  LL  C    N  +AE  A+  +   P    S+ LL N+Y 
Sbjct: 709 EARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYA 768

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G W DA K+R  MK+ GV K PG+SWIE N +++
Sbjct: 769 SKGMWTDAKKVRERMKFEGVVKEPGRSWIEINKEVH 804



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 165/328 (50%), Gaps = 14/328 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G +VHA  I   L  +  V +SL+DMY KC  + E+ +VFD     + V  +A+++G
Sbjct: 366 LEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEG 425

Query: 62  YCQTG---DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y + G   +    + IF +M        L +F  +LRA A L +L L K++H    +   
Sbjct: 426 YSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGL 485

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D+   SAL+ +Y+ C C+  +  +F +M V++L+ WNSM SG+ Q    EEAL +F +
Sbjct: 486 NLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLE 545

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           +     +PD  +F+ +++A  ++  +  G++ H   + +     P I   N ++D+  + 
Sbjct: 546 LQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYIT--NALLDMYAKC 603

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCHLSYVL 291
           G  E+A    ++A  R D   W  ++ +         A ++ +K+M   ++P+ ++++V 
Sbjct: 604 GSPEDAHKAFDSAASR-DVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPN-YITFVG 661

Query: 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
           + +     G   D  K   LM   G++ 
Sbjct: 662 VLSACSHAGLVEDGLKQFELMLRFGIEP 689



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 125/233 (53%), Gaps = 13/233 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +V V + L+D Y K G +D +  VFD + +K++V+ + ++ G  + G     +++F ++ 
Sbjct: 182 DVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLM 241

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           E     D +    VL AC+ L  L  GK++H   +R    KD  + + L+D Y KCG V 
Sbjct: 242 EGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVR 301

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            AH++F  MP +N+I+W +++SG+ QN   +EA+ +F  M + G KPD  +   +L++C+
Sbjct: 302 AAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCA 361

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIE 244
            +  ++     F +    Y IK  + +     N ++D+  +   L EA  + +
Sbjct: 362 SLHALE-----FGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFD 409



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 113/203 (55%), Gaps = 7/203 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++HA ++  G   +  + + L+D Y KCG V  +H++FD M  KN +S + LL G
Sbjct: 265 LEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSG 324

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    +  + +F  M +     D+F+   +L +CA L AL  G +VH   I+ +   D
Sbjct: 325 YKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGND 384

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE---ALRIFDD 174
             + ++L+D+YAKC C+  A ++F      +++ +N+MI G+++ G   E   AL IF D
Sbjct: 385 SYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHD 444

Query: 175 MTEGGTKPDHVSFIGVLSACSHM 197
           M     +P  ++F+ +L A + +
Sbjct: 445 MRFRLIRPSLLTFVSLLRASASL 467



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 132/262 (50%), Gaps = 15/262 (5%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH ++I  GL  +  + + L+++Y + G +  + +VF+KM ++N V+ S ++      G 
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGF 125

Query: 68  FESVIRIFREM--------EEIDLFSFGIVLRACAGL--AALRLGKEVHCQYIRRSGCKD 117
           +E  + +F +          E  L SF   ++AC+GL  +   +  ++    ++    +D
Sbjct: 126 YEESLVVFLDFWRTRKNSPNEYILSSF---IQACSGLDGSGRWMVFQLQSFLVKSRFDRD 182

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + L+D Y K G +D+A  +F  +P ++ +TW +MISG  + GR   +L++F  + E
Sbjct: 183 VYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLME 242

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G   PD      VLSACS +  ++ G++  A + + Y  +      N ++D   + G + 
Sbjct: 243 GNVVPDGYILSTVLSACSILPFLEGGKQIHAHILR-YGHEKDASLMNVLIDSYVKCGRVR 301

Query: 238 EAETLIENADCRHDSSLWEVLL 259
            A  L +    ++  S W  LL
Sbjct: 302 AAHKLFDGMPNKNIIS-WTTLL 322


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 197/330 (59%), Gaps = 5/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G  VH  ++  G+  +VV  +SLVDMY K GL+D + RVF  M+ +N VS SA++ G
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +  +R+FR M+    + D  +    L AC+ +  L+LG+ VH   +RR    +
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDF-N 343

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            I+ +A +D+Y+KCG +  A  +F  +  R+LI WN+MI+    +GRG++AL +F +M E
Sbjct: 344 CILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PDH +F  +LSA SH GL++ G+  F  M   ++I P  +HY C+VDLL R+GL+E
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  L+ +       ++W  LL  C   +   + E +A  I+EL+PD      L+ N+Y 
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           A  +W+   ++R LMK SG KKMPG S IE
Sbjct: 524 ATKKWDKVRQVRKLMKDSGSKKMPGCSSIE 553



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 158/302 (52%), Gaps = 20/302 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ V  +    G   +V V SSL+ +Y + G + ++ +VF +M +++ V+ S ++ G
Sbjct: 124 LRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAG 183

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     I+++R M E  +    +V+    +AC     +R+G  VH   +R     D
Sbjct: 184 FVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMD 243

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V+  ++LVD+YAK G +D A ++F  M  RN ++W++MISGFAQNG+ +EALR+F +M  
Sbjct: 244 VVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQA 303

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM-----VDLLGR 232
            G +PD  + +  L ACS++G +  GR     + + +        +NC+     +D+  +
Sbjct: 304 SGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRF-------DFNCILGTAAIDMYSK 356

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
            G L  A+ L  N     D  LW  ++  C        A  + +++ E  ++PD H ++ 
Sbjct: 357 CGSLASAQMLF-NMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPD-HATFA 414

Query: 291 LL 292
            L
Sbjct: 415 SL 416



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 62  YCQTGDFESVIRIFREMEEI---DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           + + G   S +R+FR +      D  +F + L ACA L  LR G+ V  +        DV
Sbjct: 84  HSRRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + S+L+ LYA+ G +  A ++F++MP R+ +TW++M++GF   G+  +A++++  M E 
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G K D V  IGV+ AC+    +  G      + + + ++  +     +VD+  + GLL+ 
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           A  +      R+D S W  ++        +  A R+ + +    ++PD
Sbjct: 263 ACRVFGLMVHRNDVS-WSAMISGFAQNGQSDEALRLFRNMQASGIQPD 309


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 130/341 (38%), Positives = 208/341 (60%), Gaps = 11/341 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H+ V+  GL  N VV ++LV+MYGK G +DE+ RVF  + +K+ VS +AL+  
Sbjct: 27  LRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTALMSA 86

Query: 62  YCQTGDFESVIRIFREME-------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y +   +   +++FREM        + D   F  +L+ACA L+A   G+  H + I+  G
Sbjct: 87  YSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAH-RRIQECG 145

Query: 115 --CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               D ++   ++++Y KCG +  AH++F  M  R+ + W ++ISG+A +G  EE+L +F
Sbjct: 146 YDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMF 205

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
             M + G+KPD VS + VLS CSH GL+++G   F  +TKE+ ++P  +HY CM+DLLGR
Sbjct: 206 WRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGR 265

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
           +G LE AE +I     +  +  W + L AC    +    +R A+K++EL+P    +YV L
Sbjct: 266 SGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDTERGKRAAEKVLELEP-VPAAYVSL 324

Query: 293 DNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            N+Y A G W+   ++R+ MK  G++K PG+S IE NS+++
Sbjct: 325 SNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEVNSRVH 365



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 4/127 (3%)

Query: 82  DLFSFGIVLRACAG-LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
           D   F   L AC G LA LRLGK +H   +      + ++ +ALV++Y K GC+D A ++
Sbjct: 9   DKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRV 68

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT---EGGTKPDHVSFIGVLSACSHM 197
           F  +  ++L++W +++S +++     EAL++F +MT     GTKPD   F  +L AC+ +
Sbjct: 69  FRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQACATL 128

Query: 198 GLIDRGR 204
                GR
Sbjct: 129 SAAAEGR 135


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 198/362 (54%), Gaps = 36/362 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +KQGK+VHA+        + VV+SSL+DMY K GL D    VFD +   NS+S + ++ G
Sbjct: 122 VKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISG 181

Query: 62  YCQTGDFESVIRIFREMEEIDLFSF--------------------------GI------- 88
           Y ++G      R+FR+    +LF++                          GI       
Sbjct: 182 YARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLV 241

Query: 89  ---VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              V+ ACA LA   LGK++H   I       + I +AL+D+YAKC  +  A  IF +M 
Sbjct: 242 LSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMC 301

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +++++W S+I G AQ+G+ EEAL ++D+M   G KP+ V+F+G++ ACSH GL+ +GR 
Sbjct: 302 RKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRT 361

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F +M +++ I P ++HY C++DL  R+G L+EAE LI       D   W  LL +C   
Sbjct: 362 LFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRH 421

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  +A R+A  ++ LKP+   SY+LL N+Y   G W D  K+R LM     KK PG S 
Sbjct: 422 GNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSC 481

Query: 326 IE 327
           I+
Sbjct: 482 ID 483



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 103/174 (59%), Gaps = 6/174 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            K++HA++I  GL  +  + ++L++ YGKCGL+ ++ ++FD + +++ V+ ++LL     
Sbjct: 22  AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNL 81

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRL--GKEVHCQYIRRSGCKDV 118
           +      + I R +       D F F  +++ACA L  L +  GK+VH ++       D 
Sbjct: 82  SNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDD 141

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           +++S+L+D+YAK G  D+   +F  +   N I+W +MISG+A++GR  EA R+F
Sbjct: 142 VVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLF 195



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 54/100 (54%)

Query: 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFA 160
           L K++H Q I+    +   I + L++ Y KCG +  A Q+F  +P R+ + W S+++   
Sbjct: 21  LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACN 80

Query: 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
            + R   AL I   +   G  PDH  F  ++ AC+++G++
Sbjct: 81  LSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVL 120


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 127/336 (37%), Positives = 202/336 (60%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+   ++H  +I  G+  +    S+L+D+Y KC  V ++  VF+++  K+ V  +A+  G
Sbjct: 460 LELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSG 519

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  + E  +++++ ++   L    F+F  V+ A + +A+LR G++ H Q I+     D
Sbjct: 520 YTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDD 579

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + + LVD+YAK G ++ AH+ F+    ++   WNSMI+ +AQ+G  E+AL++F+DM  
Sbjct: 580 PFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIM 639

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP++V+F+GVLSACSH GL+D G  HF SM+ ++ I+P IEHY CMV LLGRAG L 
Sbjct: 640 EGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMS-QFGIEPGIEHYVCMVSLLGRAGKLY 698

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE    +  + +W  LL AC    N  +    A+  +   P    SYVLL N++ 
Sbjct: 699 EAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFA 758

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G W +  ++R  M  SGV K PG SWIE N++++
Sbjct: 759 SKGMWVNVRRLREKMDISGVVKEPGCSWIEVNNEIH 794



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 151/290 (52%), Gaps = 10/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G++VHA  I + +  +  V++ L+DMY KC  + ++ +VF+ M   + VS +A+++G
Sbjct: 359 LEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEG 418

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +       + +FREM        L  F  +L   A L  L L  ++H   I+     D
Sbjct: 419 YSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLD 478

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               SAL+D+Y+KC  V  A  +F ++  ++++ W +M SG+ Q    EE+L+++  +  
Sbjct: 479 EFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQM 538

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              KP+  +F  V++A S++  +  G++ H   +   +   P +   N +VD+  ++G +
Sbjct: 539 SRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVA--NTLVDMYAKSGSI 596

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKK-IME-LKPD 284
           EEA     + + + D++ W  ++        A  A +V +  IME LKP+
Sbjct: 597 EEAHKAFISTNWK-DTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPN 645



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 126/246 (51%), Gaps = 13/246 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L    ++H  V+  G   +V V +SL+D Y K   +D++  +FD +  K S + + ++ G
Sbjct: 157 LNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAG 216

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  +  +++F +M+E     D +    VL AC  L  L  GK++HC  +R     D
Sbjct: 217 YSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMD 276

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +  +D Y KC  V    ++F +M  +N+++W ++I+G  QN    +AL +F +M  
Sbjct: 277 VSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMAR 336

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRA 233
            G  PD      VL++C  +  +++GR+  A     Y IK  I++     N ++D+  + 
Sbjct: 337 MGWNPDAFGCTSVLNSCGSLVALEKGRQVHA-----YAIKVNIDNDDFVKNGLIDMYAKC 391

Query: 234 GLLEEA 239
             L +A
Sbjct: 392 DSLTDA 397



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 111/206 (53%), Gaps = 6/206 (2%)

Query: 6   KEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           K++H+K++  G    ++ + ++L+  Y K  LV+ ++++FD M  KN V+ S+++  Y  
Sbjct: 58  KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117

Query: 65  TGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
                  + +F +      E+ + +    V+RAC     L    ++H   ++    +DV 
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVY 177

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+D Y K  C+D A  +F  + V+   TW ++I+G+++ GR + +L++FD M EG 
Sbjct: 178 VCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGH 237

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK 205
             PD      VLSAC  +  ++ G++
Sbjct: 238 VCPDKYVLSSVLSACLMLKFLEGGKQ 263



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 113/208 (54%), Gaps = 7/208 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H  V+  G+  +V + +  +D Y KC  V    ++FD+M+ KN VS + ++ G
Sbjct: 258 LEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAG 317

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q       + +F EM  +    D F    VL +C  L AL  G++VH   I+ +   D
Sbjct: 318 CMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDND 377

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +++ L+D+YAKC  +  A ++F  M   +L+++N+MI G+++  +  EAL +F +M  
Sbjct: 378 DFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRL 437

Query: 178 GGTKPD---HVSFIGVLSACSHMGLIDR 202
             + P     VS +GV ++  H+ L ++
Sbjct: 438 SLSSPTLLIFVSLLGVSASLYHLELSNQ 465


>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
          Length = 493

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 199/333 (59%), Gaps = 5/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G   HA V+  G   N  + SSLV MY KCG+V+E+ RVF++M ++N V  ++++ G
Sbjct: 124 MKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG 183

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q+G F+  + +FR+M+    + D  +   V+ +C  + AL LG+ +H         K+
Sbjct: 184 CTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKE 243

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT- 176
           + ++++L+D+Y+KCG V+ A+QIF  +  R++ TW  MI GFA NG   EAL +F  M  
Sbjct: 244 LSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEG 303

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E    P+ V F+GVL+ACSH GL+++G  HF  M+K Y + P+IEHY CMVDLLGRA LL
Sbjct: 304 EDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLL 363

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE  I++     D  +W  LL AC       +AE  A++I +L+P     +VLL NVY
Sbjct: 364 AEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLLSNVY 423

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
               RW D   +RT M  S   K PG S+IE +
Sbjct: 424 ATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVD 456



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 134/269 (49%), Gaps = 18/269 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS--VSSSALL 59
           L  G + HA  + L L  +  V ++L++MY  C     +  V D   +  S  VS + ++
Sbjct: 21  LDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTII 80

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY + G     ++ F +M +    +D  +   VL ACA   A+++G   H   +     
Sbjct: 81  AGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFE 140

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +  I S+LV +YAKCG V+ A ++F +MP RN++ W SMI+G  Q+GR +EA+ +F DM
Sbjct: 141 INCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDM 200

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA-----SMTKEYRIKPKIEHYNCMVDLL 230
              G K D  +   V+S+C  MG +D GR   A      + KE  +K      N ++D+ 
Sbjct: 201 QIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVK------NSLIDMY 254

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLL 259
            + G + +A  +      R D   W V++
Sbjct: 255 SKCGDVNKAYQIFHGLTKR-DVFTWTVMI 282


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 131/338 (38%), Positives = 208/338 (61%), Gaps = 11/338 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++HA+++ LG   +V + +SLV  Y  C  +D +  VFD+M +++ VS + ++  
Sbjct: 144 LSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDA 203

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR---SGC 115
           + + G+F++ + +F EM+   E D ++   +  ACAG+ +L LG   H   +++      
Sbjct: 204 FVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRV 263

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV++ ++LVD+Y KCG ++ A Q+F +MP R++ +WNSMI GF+ +G    AL  F  M
Sbjct: 264 NDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCM 323

Query: 176 TEG-GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
                  P+ ++F+GVLSAC+H GL+  GR++F  M  EY+IKP++EHY C+VDLL RAG
Sbjct: 324 VRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAG 383

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHV--AERVAKKIMELKPD-CHLSYVL 291
           L++EA  ++ N   R D  +W  LL AC   +NA V  +E +A++++E +   C   YVL
Sbjct: 384 LIDEALDVVSNMPMRPDLVIWRSLLDACCK-QNAGVELSEEMARRVLEAEGGVCSGVYVL 442

Query: 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           L  VY +  RWND   +R LM   GV K PG S IE +
Sbjct: 443 LSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEID 480



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 137/280 (48%), Gaps = 27/280 (9%)

Query: 2   LKQGKEVHAKVI---------TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS 52
           + Q K++HA+ I         T  L   ++  SSL D+         + RVF ++   NS
Sbjct: 39  ISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDL-------RYAFRVFHQIENPNS 91

Query: 53  VSSSALLQGYCQTGDF-ESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVH 106
              +AL++   ++ D  +  I ++  M E      D  +F  VL+ACA L AL  G+++H
Sbjct: 92  FMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIH 151

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
            Q ++     DV I ++LV  YA C  +DFA  +F +M  R+L++WN +I  F + G  +
Sbjct: 152 AQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFD 211

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY---RIKPKIEHY 223
            AL +F +M +   +PD  +   + +AC+ MG +  G      + K++   R+   + + 
Sbjct: 212 AALNLFGEM-QKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLN- 269

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
             +VD+  + G LE A  L      R  +S   ++LG  T
Sbjct: 270 TSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFST 309


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 198/337 (58%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVF-DKMLKKNSVSSSALLQ 60
           + QG ++H+ +I +GL     V +SL+ MY KC  + ++  VF D     N VS +A+L 
Sbjct: 477 INQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILS 536

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
              Q      V R+F+ M     + D  +   +L  CA LA+L +G +VHC  ++     
Sbjct: 537 ACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVV 596

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV + + L+D+YAKCG +  A  +F      ++++W+S+I G+AQ G G EAL +F  M 
Sbjct: 597 DVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMK 656

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P+ V+++GVLSACSH+GL++ G   + +M  E  I P  EH +CMVDLL RAG L
Sbjct: 657 NLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCL 716

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE  I+      D ++W+ LL +C T  N  +AER A+ I++L P    + VLL N++
Sbjct: 717 YEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIH 776

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            +VG W +  ++R LMK  GV+K+PG+SWI    +++
Sbjct: 777 ASVGNWKEVARLRNLMKQMGVQKVPGQSWIAVKDQIH 813



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 130/243 (53%), Gaps = 6/243 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK++H  ++      ++V+++ +++MYGKCG + ++ + FD M  +N VS + ++ G
Sbjct: 173 LKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISG 232

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     I ++ +M +     D  +FG +++AC     + LG+++H   I+      
Sbjct: 233 YSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHH 292

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           +I ++AL+ +Y + G +  A  +F  +  ++LI+W SMI+GF Q G   EAL +F DM  
Sbjct: 293 LIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFR 352

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +G  +P+   F  V SAC  +   + GR+    M  ++ +   +     + D+  + G L
Sbjct: 353 QGFYQPNEFIFGSVFSACRSLLEPEFGRQ-IHGMCAKFGLGRNVFAGCSLCDMYAKFGFL 411

Query: 237 EEA 239
             A
Sbjct: 412 PSA 414



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 143/291 (49%), Gaps = 16/291 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H  VI  G   +++ +++L+ MY + G +  +  VF  +  K+ +S ++++ G+ Q
Sbjct: 277 GRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQ 336

Query: 65  TGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            G     + +FR+M      + + F FG V  AC  L     G+++H    +    ++V 
Sbjct: 337 LGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVF 396

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
              +L D+YAK G +  A + F Q+   +L++WN++I+ F+ +G   EA+  F  M   G
Sbjct: 397 AGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTG 456

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRAGL 235
             PD ++F+ +L AC     I++G +        Y IK  ++      N ++ +  +   
Sbjct: 457 LMPDGITFLSLLCACGSPVTINQGTQ-----IHSYIIKIGLDKEAAVCNSLLTMYTKCSN 511

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
           L +A  + ++     +   W  +L AC   + A    R+ K ++  E KPD
Sbjct: 512 LHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPD 562



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 123/226 (54%), Gaps = 21/226 (9%)

Query: 37  VDESHRVFDKMLKKNS--VSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFGIV 89
           +DE    F  ++K++S  +S+++ +   C+   +   +  F         +++  ++G +
Sbjct: 104 LDEIPCQFVCLIKQHSRELSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNL 163

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           + AC  + +L+ GK++H  +I +S C+ D+++++ ++++Y KCG +  A + F  M +RN
Sbjct: 164 ILACTSIRSLKYGKKIH-DHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRN 222

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +++W  MISG++QNG+  +A+ ++  M + G  PD ++F  ++ AC   G ID GR+   
Sbjct: 223 VVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQ--- 279

Query: 209 SMTKEYRIKPKIEHY----NCMVDLLGRAGLLEEAE---TLIENAD 247
                + IK   +H+    N ++ +  R G +  A    T+I   D
Sbjct: 280 --LHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKD 323


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/330 (39%), Positives = 201/330 (60%), Gaps = 5/330 (1%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           EVHA+V+      +  V ++L+D Y K G V+E+ +VF  +  K+ V+ SA+L GY QTG
Sbjct: 18  EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 77

Query: 67  DFESVIRIFREMEE----IDLFSFGIVLRACAGL-AALRLGKEVHCQYIRRSGCKDVIIE 121
           + E+ I++F E+ +     + F+F  +L  CA   A++  GK+ H   I+      + + 
Sbjct: 78  ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 137

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SAL+ +YAK G ++ A ++F +   ++L++WNSMISG+AQ+G+  +AL +F +M +   K
Sbjct: 138 SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 197

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D V+FIGV +AC+H GL++ G K+F  M ++ +I P  EH +CMVDL  RAG LE+A  
Sbjct: 198 MDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 257

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           +IEN      S++W  +L AC   +   +    A+KI+ +KP+   +YVLL N+Y   G 
Sbjct: 258 VIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGD 317

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           W +  K+R LM    VKK PG SWIE  +K
Sbjct: 318 WQERAKVRKLMNERNVKKEPGYSWIEVKNK 347



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 9/151 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + QGK+ H   I   L  ++ V S+L+ MY K G ++ +  VF +  +K+ VS ++++ G
Sbjct: 115 MGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISG 174

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F+EM+    ++D  +F  V  AC     +  G++     +R   CK 
Sbjct: 175 YAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVR--DCKI 232

Query: 118 VIIE---SALVDLYAKCGCVDFAHQIFLQMP 145
              +   S +VDLY++ G ++ A ++   MP
Sbjct: 233 APTKEHNSCMVDLYSRAGQLEKAMKVIENMP 263


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 205/336 (61%), Gaps = 7/336 (2%)

Query: 2   LKQGKEVHAKVITL-GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++ G+E+H  V    G   ++ + ++ + +Y KCG V+ +  +F+ +  K+ VS + L+ 
Sbjct: 231 IELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIG 290

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR-SGC 115
           GY     ++  + +F+EM    E  +  +   VL ACA L A+ +G+ +H    +R  G 
Sbjct: 291 GYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGV 350

Query: 116 KD-VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            +   + ++L+D+YAKCG ++ AHQ+F  M  ++L +WN+MI GFA +GR   A  +F  
Sbjct: 351 TNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSR 410

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M + G +PD ++ +G+LSACSH GL+D GR  F S+T++Y I PK+EHY CM+DLLG AG
Sbjct: 411 MRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAG 470

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
           L +EAE +I       D  +W  LL AC    N  +AE  A+K+ME++P+   SYVLL N
Sbjct: 471 LFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSN 530

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
           +Y   GRW D  +IR ++   G+KK+PG S IE +S
Sbjct: 531 IYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDS 566



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 142/295 (48%), Gaps = 38/295 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            ++G+++HA+V+ LG   +    +SL+ MY + G ++++ +VFD   +++ VS +AL+ G
Sbjct: 99  FEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITG 158

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI--------------------------------- 88
           Y   GD  S  ++F  + E D+ S+                                   
Sbjct: 159 YASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTL 218

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQIFLQMP 145
             VL ACA   ++ LG+E+H       G    + I +A + LY+KCG V+ A  +F  + 
Sbjct: 219 VSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLS 278

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +++++WN++I G+      +EAL +F +M   G  P+ V+ + VL AC+H+G ID GR 
Sbjct: 279 CKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRW 338

Query: 206 HFASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
               + K  + +         ++D+  + G +E A  +  N+      S W  ++
Sbjct: 339 IHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVF-NSMMHKSLSSWNAMI 392



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 38/257 (14%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAA 98
           VF+   + N +  + +L+G   + D  S + ++  M       + ++F  +L++CA    
Sbjct: 39  VFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKT 98

Query: 99  LRLGKEVHCQYIRRSGC--------------------------------KDVIIESALVD 126
              G+++H Q + + GC                                +DV+  +AL+ 
Sbjct: 99  FEEGRQIHAQ-VMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALIT 157

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
            YA  G V  A ++F  +  R++++WN+MI+G+ +N   EEAL +F +M     +PD  +
Sbjct: 158 GYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGT 217

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
            + VLSAC+  G I+ GR+    +   +     ++  N  + L  + G +E A  L E  
Sbjct: 218 LVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGL 277

Query: 247 DCRHDSSLWEVLLGACT 263
            C+ D   W  L+G  T
Sbjct: 278 SCK-DVVSWNTLIGGYT 293



 Score = 44.7 bits (104), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           + +A  +F      NL+ WN+M+ G A +      L ++  M   G  P+  +F  +L +
Sbjct: 33  LPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKS 92

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCR 249
           C+     + GR+  A + K   +  +++ Y    ++ +  R G LE+A  + + +  R
Sbjct: 93  CAKSKTFEEGRQIHAQVMK---LGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQR 147


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 201/339 (59%), Gaps = 7/339 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQ 60
           L  G + HAK I  G   N  V S L+DMY KCG  + ES +VF+++   + V  + ++ 
Sbjct: 257 LSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMIS 316

Query: 61  GYCQTGDFE-SVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRS-G 114
           GY Q  +     +  FR+M+    +    SF   + AC+ L++   GK+ H   ++    
Sbjct: 317 GYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIP 376

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
              + + +ALV +Y+KCG +  A ++F +MP  N +T NS+I+G+AQ+G G E+L +F+ 
Sbjct: 377 SNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQ 436

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M      P  ++ + +LSAC+H G ++ G+K+F  M   + I+P+ EHY+CM+DLLGRAG
Sbjct: 437 MLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAG 496

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L EAE LI+       S+ W  LLGAC  + N  +AE+ A + ++L+P   + Y++L +
Sbjct: 497 KLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLAS 556

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +Y A  +W +A +IR LM+  G++K PG SWIE N +++
Sbjct: 557 MYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVH 595



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 13/248 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV   ++L+  Y K  L+  +H +FD++ + + VS + L+  Y   GD  S + +F EM 
Sbjct: 73  NVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMR 132

Query: 80  EIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           E+ L    F+F  V+ AC     L   +++H           V ++++L+  Y+K G ++
Sbjct: 133 EMGLVMDGFTFSGVITACCNHVGLI--RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILE 190

Query: 136 FAHQIFLQM--PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
            A  +F  M   VR+ ++WNSMI  + Q+ RG +AL ++ DM   G + D  +   VL+ 
Sbjct: 191 EAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTT 250

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC-MVDLLGRAGL-LEEAETLIENADCRHD 251
            S +  +  G +  A   K    K +  H    ++D+  + G  + E+  + E   C  D
Sbjct: 251 FSCVEDLSGGLQFHAKAIKTGFNKNR--HVGSGLIDMYAKCGAGMSESRKVFEEI-CGSD 307

Query: 252 SSLWEVLL 259
             +W  ++
Sbjct: 308 LVVWNTMI 315



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 36/193 (18%)

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC--------- 133
           L SF  +L++C     L  GK +H  Y++        + +  + LY+KC           
Sbjct: 8   LQSFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFN 67

Query: 134 ----------------------VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                                 +  AH +F Q+P  +L+++N++I+ +A  G    AL +
Sbjct: 68  QTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSL 127

Query: 172 FDDMTEGGTKPDHVSFIGVLSA-CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           F +M E G   D  +F GV++A C+H+GLI    +   S+         +   N ++   
Sbjct: 128 FGEMREMGLVMDGFTFSGVITACCNHVGLI----RQLHSLAFSSGFDSYVSVKNSLLTYY 183

Query: 231 GRAGLLEEAETLI 243
            + G+LEEAE + 
Sbjct: 184 SKNGILEEAEMVF 196


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 210/370 (56%), Gaps = 38/370 (10%)

Query: 5   GKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+++H + I +G  G ++ V +S++DMY KCG ++   +VFD+M  ++ +S + L+  Y 
Sbjct: 165 GRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYV 224

Query: 64  QTGDFESVIRIF----------------------REMEEIDLFS----FGI--------- 88
           ++G+ ES   +F                      +  E I  F     FG+         
Sbjct: 225 KSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIG 284

Query: 89  VLRACAGLAALRLGKEVH--CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
           V+ ACA L A +    +    +     G   V++ SAL+D+Y+KCG V  A+++F  M  
Sbjct: 285 VISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKE 344

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN+ +++SMI GFA +GR  +A+++FD+M +   KP+ V+FIGVL+ACSH G++++G + 
Sbjct: 345 RNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQI 404

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F  M K Y IKP  +HY CMVDLLGRAG L+EA  L++         +W  LLGAC   +
Sbjct: 405 FELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHK 464

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           +  +A   A  + EL+P C  +Y+LL N+Y + GRWND   +R LM+  G++K P  SWI
Sbjct: 465 SPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWI 524

Query: 327 EANSKLNHDL 336
           E+   + H+ 
Sbjct: 525 ESEKGMVHEF 534



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 159/328 (48%), Gaps = 50/328 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESH--RVFDKMLKKNSVSSSALL 59
           L Q K+VHA+++  GL  +  V + L+    K  +  + +   +F+++   N    +AL+
Sbjct: 59  LTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNALI 118

Query: 60  QGYC------QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +GY       ++ +F S++R  +E      F+F  + +AC     + LG+++H Q I   
Sbjct: 119 RGYLIEERLKESTEFYSLMR--KEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVG 176

Query: 114 GC-KDVIIESALVDLYAKCGCVDFAHQIFLQM---------------------------- 144
           G  +D+ + ++++D+Y KCG ++   ++F +M                            
Sbjct: 177 GFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELF 236

Query: 145 ---PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG--- 198
              PV++++ W  M+SGFAQN +  EA+  F+ M E G + D ++ IGV+SAC+ +G   
Sbjct: 237 DGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAK 296

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
             D  R    +   E+  K  +   + ++D+  + G + +A  + +    R+  S   ++
Sbjct: 297 YADWIRD--VAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMI 354

Query: 259 LGACTTFRNAHVAERVAKKIM--ELKPD 284
           LG     R  H A ++  +++  E+KP+
Sbjct: 355 LGFAMHGR-VHDAMKLFDEMVKTEIKPN 381


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 200/336 (59%), Gaps = 17/336 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH+    LG   N+ + +SLV +Y KCG +DE+  +F++M  KN ++ +A++ G+ Q
Sbjct: 201 GMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQ 260

Query: 65  TGDFES---------------VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQY 109
             D                   +++ R   + DLF+   +L  C+ LAAL  G+++H Q 
Sbjct: 261 AMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQT 320

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
           I+     DV++ +ALVD+Y KCG ++ A + FL M  R LI+W SMI+ FA++G+ + AL
Sbjct: 321 IKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHAL 380

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
           ++F+DM   G +P+ ++F+GVL+ACSH G++D   ++F  M KEY+IKP ++HY C+VD+
Sbjct: 381 QLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDM 440

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY 289
             R G L+EA  +I+  D   +  +W +L+  C    N  +    A+++++LKP    +Y
Sbjct: 441 FVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTETY 500

Query: 290 VLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           V+L N+Y +  RW D   +R LMK   V K+  K W
Sbjct: 501 VVLLNMYISAERWEDVSMVRRLMKEEKVGKL--KDW 534



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 127/247 (51%), Gaps = 5/247 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VHA VI  G      V S LV++Y KCG++  + +VFD + ++N V  + L+ GY Q   
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61

Query: 68  FESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            E  + +F +M E       F+  I L AC+ L ++ LGK+ H   I+     D  I +A
Sbjct: 62  PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNA 121

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L  LY+K G +D + + F +   +++I+W ++IS    NGR    LR+F +M     +P+
Sbjct: 122 LCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPN 181

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
             +   VLS CS +   D G +   S++ +   +  +   N +V L  + G ++EA+ L 
Sbjct: 182 DFTLTSVLSLCSTIQSSDLGMQ-VHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLF 240

Query: 244 ENADCRH 250
              + ++
Sbjct: 241 NRMEYKN 247



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 124/250 (49%), Gaps = 16/250 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+ HA +I   +  +  + ++L  +Y K G +D S + F +  +K+ +S + ++     
Sbjct: 100 GKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGD 159

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     +R+F EM     E + F+   VL  C+ + +  LG +VH    +     ++ I
Sbjct: 160 NGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRI 219

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-----------NGRGEEAL 169
            ++LV LY KCGC+D A  +F +M  +NLITWN+MI+G AQ              G EAL
Sbjct: 220 TNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEAL 279

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            ++  +   G KPD  +   +L+ CS +  +++G +  A   K   +   +     +VD+
Sbjct: 280 GMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVG-TALVDM 338

Query: 230 LGRAGLLEEA 239
             + G +E A
Sbjct: 339 YDKCGSIERA 348



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
           VH   I+    ++  + S LV++YAKCG +  A ++F  +P RN++ W ++++G+ QN +
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
            E A+ +F DM E G+ P + +    L+ACS +  I  G K F +   +YRI       N
Sbjct: 62  PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLG-KQFHAFIIKYRISHDSSIGN 120

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
            +  L  + G L+ +           D   W  ++ AC
Sbjct: 121 ALCSLYSKFGSLDSSVKAFRETG-EKDVISWTTIISAC 157



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 6/171 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+++HA+ I  G   +VVV ++LVDMY KCG ++ + + F  M  +  +S ++++  
Sbjct: 310 LEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITS 369

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + + G  +  +++F +M       +  +F  VL AC+    +    E      +    K 
Sbjct: 370 FARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKP 429

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGE 166
           V+     LVD++ + G +D A  +  +M V  N   W  +I+G   +G  E
Sbjct: 430 VMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEE 480


>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 581

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 199/333 (59%), Gaps = 5/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G   HA V+  G   N  + SSLV MY KCG+V+E+ RVF++M ++N V  ++++ G
Sbjct: 212 MKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG 271

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q+G F+  + +FR+M+    + D  +   V+ +C  + AL LG+ +H         K+
Sbjct: 272 CTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKE 331

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT- 176
           + ++++L+D+Y+KCG V+ A+QIF  +  R++ TW  MI GFA NG   EAL +F  M  
Sbjct: 332 LSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEG 391

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E    P+ V F+GVL+ACSH GL+++G  HF  M+K Y + P+IEHY CMVDLLGRA LL
Sbjct: 392 EDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLL 451

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE  I++     D  +W  LL AC       +AE  A++I +L+P     +VLL NVY
Sbjct: 452 AEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLLSNVY 511

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
               RW D   +RT M  S   K PG S+IE +
Sbjct: 512 ATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVD 544



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 134/269 (49%), Gaps = 18/269 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS--VSSSALL 59
           L  G + HA  + L L  +  V ++L++MY  C     +  V D   +  S  VS + ++
Sbjct: 109 LDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTII 168

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY + G     ++ F +M +    +D  +   VL ACA   A+++G   H   +     
Sbjct: 169 AGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFE 228

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +  I S+LV +YAKCG V+ A ++F +MP RN++ W SMI+G  Q+GR +EA+ +F DM
Sbjct: 229 INCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDM 288

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA-----SMTKEYRIKPKIEHYNCMVDLL 230
              G K D  +   V+S+C  MG +D GR   A      + KE  +K      N ++D+ 
Sbjct: 289 QIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVK------NSLIDMY 342

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLL 259
            + G + +A  +      R D   W V++
Sbjct: 343 SKCGDVNKAYQIFHGLTKR-DVFTWTVMI 370


>gi|147820082|emb|CAN67135.1| hypothetical protein VITISV_005195 [Vitis vinifera]
          Length = 800

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 202/336 (60%), Gaps = 28/336 (8%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKC--GLVDESHRVFDKMLKKNSVSSSALLQG 61
           QGK +H  VI  GL   V + +SL+ MY K     +DE+  +F+ +  K+ VS +++L G
Sbjct: 321 QGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTG 380

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G  E  ++ F  M      ID ++F  VLR+C+ LA L+LG++VH           
Sbjct: 381 FSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVL--------- 431

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
                        CG ++ A + F   P  + I WNS+I G+AQ+GRG+ AL +F  M +
Sbjct: 432 -------------CGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKD 478

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              K DH++F+ VL+ACSH+GL++ G     SM  +Y I P++EHY CM+DLLGRAG L+
Sbjct: 479 RRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLD 538

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+ LIE      D+ +W+ LLGAC T  +  +A +VA  ++EL+P+ H +YVLL +++ 
Sbjct: 539 EAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFG 598

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            + RWN+   I+ LMK  GVKK+PG SWIE  ++++
Sbjct: 599 HLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVH 634



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 172/364 (47%), Gaps = 50/364 (13%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH+ ++ +G  GNV   S+L+DMY KC  V+++  VF  +  +NSV+ +AL+ GY  
Sbjct: 119 GQQVHSMIVKIGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAH 178

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD  +   +   ME    EID  +F  +L         +L  +VH + ++     D  +
Sbjct: 179 VGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTV 238

Query: 121 ESALVDLYAKCGCVDFAHQIF-LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
            +A++  Y++CG ++ A ++F   +  R+L+TWNSM++ +  N + EEA  +F +M   G
Sbjct: 239 CNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLG 298

Query: 180 TKPDHVSFIGVLSAC---SHMG--------LIDRG----------------RKHFASMTK 212
            +PD  ++  V+SA    +H G        +I RG                + H  SM +
Sbjct: 299 FEPDIYTYTSVISAAFEXAHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDE 358

Query: 213 EYRIKPKIEH-----YNCMVDLLGRAGLLEEAETLIENADCRH---DSSLWEVLLGACTT 264
              I   +E+     +N ++    ++GL E+A    EN   ++   D   +  +L +C+ 
Sbjct: 359 ALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSD 418

Query: 265 FRNAHVAERV---------AKKIMELKP-DCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
                + ++V         A+K  +  P D  +++  L   Y   GR   A  +  LMK 
Sbjct: 419 LATLQLGQQVHVLCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKD 478

Query: 315 SGVK 318
             VK
Sbjct: 479 RRVK 482



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 5/257 (1%)

Query: 9   HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF 68
           H   I  G   ++   ++++  Y KCG +  + ++FD+  ++++VS + ++ G    G+F
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNF 81

Query: 69  ESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           E+ +   + M+     +D +SFG +L+  A +  + +G++VH   ++     +V   SAL
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSAL 141

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D+YAKC  V+ A ++F  + +RN +TWN++ISG+A  G    A  + D M   G + D 
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEIDD 201

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
            +F  +L+      L     +  A + K + +       N ++      G +E+AE + +
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVK-HGLASDTTVCNAIITAYSECGSIEDAERVFD 260

Query: 245 NADCRHDSSLWEVLLGA 261
            A    D   W  +L A
Sbjct: 261 GAIETRDLVTWNSMLAA 277


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 209/364 (57%), Gaps = 41/364 (11%)

Query: 5   GKEVHAKVIT--LGLCGNVVVESSLVDMYGKCGLVDESHRVF------------------ 44
           GK++HA+V      +  N++++S++VDMY KCGL++ + RVF                  
Sbjct: 231 GKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCG 290

Query: 45  --------------DKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSF 86
                         + M +++ +S +A++ GY Q G     + +F+EME +    D  + 
Sbjct: 291 YARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTL 350

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQM- 144
             VL ACA L A  LGK ++ QYI      ++ I+ +A++D+YAKCG +D A +IF ++ 
Sbjct: 351 VAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVG 410

Query: 145 -PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
             ++    +NSMI+G AQ+G GE A+ +F ++   G KPD V+F+GVL AC H GLI+ G
Sbjct: 411 KNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEG 470

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           +K F SM   Y IKP++EHY CMVDLLGR G LEEA  L++      +S +W  LL AC 
Sbjct: 471 KKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACR 530

Query: 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGK 323
           T  N  + E   +K++E++      YVLL N+     +W +A ++R +M+  G++K PG 
Sbjct: 531 THGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGW 590

Query: 324 SWIE 327
           S+IE
Sbjct: 591 SYIE 594



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 160/327 (48%), Gaps = 12/327 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL---VDESHRVFDKMLKKNSVSSSAL 58
            KQG ++HA+ I  GL   +   S L+  +   G    +D S  +F ++   N    + +
Sbjct: 22  FKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTM 81

Query: 59  LQGYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           ++GY ++ +    I ++  M        + F+F  +L +CA L++L  G EVH   I+  
Sbjct: 82  IRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHG 141

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D+ + +AL+ LY+  G ++ A  +F +  VR+L+++N+MI G+A+  + E AL +F 
Sbjct: 142 FESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFG 201

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR-IKPKIEHYNCMVDLLGR 232
           +M   G  PD  +F+ + S CS +   + G++  A + K  R I   I   + +VD+  +
Sbjct: 202 EMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAK 261

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
            GL+  AE +         ++ W  ++         +VA ++   + E      +S+  +
Sbjct: 262 CGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDV---ISWTAM 318

Query: 293 DNVYRAVGRWNDAFKIRTLMKYSGVKK 319
            + Y   G+ ++A ++   M+  G+K 
Sbjct: 319 ISGYSQAGQCSEALELFKEMEALGIKP 345


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 197/330 (59%), Gaps = 5/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G  VH  ++  G+  +VV  +SLVDMY K GL+D + RVF  M+ +N VS SA++ G
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +  +R+FR M+    + D  +    L AC+ +  L+LG+ VH   +RR    +
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDF-N 343

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            I+ +A +D+Y+KCG +  A  +F  +  R+LI WN+MI+    +GRG++AL +F +M E
Sbjct: 344 CILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PDH +F  +LSA SH GL++ G+  F  M   ++I P  +HY C+VDLL R+GL+E
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  L+ +       ++W  LL  C   +   + E +A  I+EL+PD      L+ N+Y 
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           A  +W+   ++R LMK SG KKMPG S IE
Sbjct: 524 ATKKWDKVRQVRKLMKDSGSKKMPGCSSIE 553



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 159/302 (52%), Gaps = 20/302 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ V  +    G   +V V SSL+ +Y + G + ++ +VFD+M +++ V+ S ++ G
Sbjct: 124 LRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAG 183

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     I+++R M E  +    +V+    +AC     +R+G  VH   +R     D
Sbjct: 184 FVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMD 243

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V+  ++LVD+YAK G +D A ++F  M  RN ++W++MISGFAQNG+ +EALR+F +M  
Sbjct: 244 VVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQA 303

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM-----VDLLGR 232
            G +PD  + +  L ACS++G +  GR     + + +        +NC+     +D+  +
Sbjct: 304 SGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRF-------DFNCILGTAAIDMYSK 356

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
            G L  A+ L  N     D  LW  ++  C        A  + +++ E  ++PD H ++ 
Sbjct: 357 CGSLASAQMLF-NMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPD-HATFA 414

Query: 291 LL 292
            L
Sbjct: 415 SL 416



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 62  YCQTGDFESVIRIFREMEEI---DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           + + G   S +R+FR +      D  +F + L ACA L  LR G+ V  +        DV
Sbjct: 84  HSRRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + S+L+ LYA+ G +  A ++F +MP R+ +TW++M++GF   G+  +A++++  M E 
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G K D V  IGV+ AC+    +  G      + + + ++  +     +VD+  + GLL+ 
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           A  +      R+D S W  ++        +  A R+ + +    ++PD
Sbjct: 263 ACRVFGLMVHRNDVS-WSAMISGFAQNGQSDEALRLFRNMQASGIQPD 309


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 206/362 (56%), Gaps = 37/362 (10%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
            GK +H     LG   N+ +++ ++++YG CG + ++  +F+KM ++++V+ + ++    
Sbjct: 28  NGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLA 87

Query: 64  QTGDFESVIRIFREM----------------------EEIDLF-------------SFGI 88
           + GD +     F  M                      E IDLF             +   
Sbjct: 88  KRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVS 147

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           VL ACA L  L LG+ VH +Y  +SG K +V + + L+D+Y KCGC++ A ++F +M  R
Sbjct: 148 VLAACADLGDLDLGRIVH-EYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEER 206

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
            +++W++MI+G A +G+ EEAL +F +M + G KP+ V+FIG+L ACSHMGLID GR+ F
Sbjct: 207 TVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFF 266

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
           ASMT +Y + P+IEHY C+VDL  RAGLLEEA   I +   + +  +W  LLG C   +N
Sbjct: 267 ASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKN 326

Query: 268 AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             +AE   K + EL P     YV++ N+Y    RW DA ++R LMK  GVKK  G S I 
Sbjct: 327 IDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSIT 386

Query: 328 AN 329
            N
Sbjct: 387 VN 388



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 35/236 (14%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D F+   VL+AC  L+ +  GK +H  + +     ++ +++ +++LY  CG +  A  +F
Sbjct: 9   DTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLF 68

Query: 142 LQMPVRNLITWN-------------------------------SMISGFAQNGRGEEALR 170
            +MP R+ +TWN                               SMISGF Q G+  EA+ 
Sbjct: 69  EKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAID 128

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F  + +   +P+ V+ + VL+AC+ +G +D GR      TK    K  +   N ++D+ 
Sbjct: 129 LFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKS-GFKRNVHVCNTLIDMY 187

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPD 284
            + G LE A  +    + R   S W  ++        A  A  +  ++++L  KP+
Sbjct: 188 VKCGCLENARRVFYEMEERTVVS-WSAMIAGLAMHGQAEEALCLFSEMIKLGVKPN 242



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VH      G   NV V ++L+DMY KCG ++ + RVF +M ++  VS SA++ G
Sbjct: 158 LDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAG 217

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  + +F EM ++ +   G+    +L AC+ +  +  G+          G   
Sbjct: 218 LAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIP 277

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            I     +VDL+++ G ++ AH+  L MP++ N + W +++ G
Sbjct: 278 QIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGG 320


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 196/336 (58%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H+  I LGL   V V + LVD Y KC   + + + F+ + + N  S SAL+ G
Sbjct: 309 LYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAG 368

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           YCQ+G F+  + +F+ +      ++ F +  + +AC+ ++ L  G ++H   I++     
Sbjct: 369 YCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLVAY 428

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  ESA++ +Y+KCG VD+AHQ FL +   + + W ++I   A +G+  EALR+F +M  
Sbjct: 429 LSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQG 488

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+ V+FIG+L+ACSH GL+  G+K   SM+ EY + P I+HYNCM+D+  RAGLL+
Sbjct: 489 SGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQ 548

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  +I +     D   W+ LLG C + RN  +    A  I  L P    +YV++ N+Y 
Sbjct: 549 EALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDPLDSATYVIMFNLYA 608

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W++A + R +M    ++K    SWI    K++
Sbjct: 609 LAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVH 644



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 143/281 (50%), Gaps = 6/281 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H+++I +G   N+ +E+ + +MY KCG +D +    +KM +KN+V+ + L+ G
Sbjct: 208 LDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVG 267

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +       + +F +M     E+D F F I+L+ACA L  L  GK++H   I+     +
Sbjct: 268 YTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESE 327

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + LVD Y KC   + A Q F  +   N  +W+++I+G+ Q+G+ + AL +F  +  
Sbjct: 328 VSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRS 387

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G   +   +  +  ACS +  +  G +  A   K+  +   +   + M+ +  + G ++
Sbjct: 388 KGVLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLV-AYLSGESAMISMYSKCGQVD 446

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
            A       D + D+  W  ++ A      A  A R+ K++
Sbjct: 447 YAHQAFLTID-KPDTVAWTAIICAHAYHGKAFEALRLFKEM 486



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 124/267 (46%), Gaps = 6/267 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK  H ++  +    N  +++ ++ MY  C     + R FDK++ ++  S S ++  
Sbjct: 108 LSDGKLFHNRLQRMA-NSNKFIDNCILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISA 166

Query: 62  YCQTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  +  +R+F  M ++ +      F  ++ +    + L LGK++H Q IR     +
Sbjct: 167 YTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAAN 226

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + IE+ + ++Y KCG +D A     +M  +N +    ++ G+ +  R  +AL +F  M  
Sbjct: 227 ISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMIS 286

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + D   F  +L AC+ +G +  G K   S   +  ++ ++     +VD   +    E
Sbjct: 287 EGVELDGFVFSIILKACAALGDLYTG-KQIHSYCIKLGLESEVSVGTPLVDFYVKCARFE 345

Query: 238 EAETLIENADCRHDSSLWEVLLGACTT 264
            A    E+    +D S   ++ G C +
Sbjct: 346 AARQAFESIHEPNDFSWSALIAGYCQS 372


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/337 (37%), Positives = 208/337 (61%), Gaps = 7/337 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +  GK++HA V+  G   N+ V +S++D Y +CG + E+ R F +M  K+ ++ + L+  
Sbjct: 229 VTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLISE 288

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             ++   E+++ +F+  E      + ++F  ++ ACA +AAL  G+++H +  RR   K+
Sbjct: 289 LERSDSSEALL-MFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYRRGFNKN 347

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDMT 176
           V + +AL+D+YAKCG +  + ++F ++  R NL++W SM+ G+  +G G EA+ +FD M 
Sbjct: 348 VELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDKMV 407

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD + F+ VLSAC H GL+++G K+F  M  EY I P  + YNC+VDLLGRAG +
Sbjct: 408 SSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKI 467

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV-AKKIMELKPDCHLSYVLLDNV 295
            EA  L+E    + D S W  +LGAC   ++  +  R+ AKK+MELKP    +YV+L  +
Sbjct: 468 GEAYELVERMPFKPDESTWGAILGACKAHKHTGLISRLAAKKVMELKPRMVGTYVMLSYI 527

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           Y A G+W +  ++R +M+  G KK  G SWIE  +++
Sbjct: 528 YAAEGKWVEFARVRKMMRMMGNKKEAGMSWIEVENQV 564



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 151/290 (52%), Gaps = 9/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDES-HRVFDKMLKKNSVSSSALLQ 60
           L  G  VH  V+ LG+ G++ V+++L++MY  C +  E+   +F  +  KN V+ + L+ 
Sbjct: 127 LAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEAAFLIFRDIKVKNDVTWTTLIT 186

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+   GD    ++++++M     ++  +   I +RA A + ++  GK++H   ++R    
Sbjct: 187 GFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASASIDSVTTGKQIHASVVKRGFQS 246

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ + ++++D Y +CG +  A + F +M  ++LITWN++IS   +     EAL +F    
Sbjct: 247 NLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLISEL-ERSDSSEALLMFQRFE 305

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+  +F  +++AC+++  ++ G++    + +       +E  N ++D+  + G +
Sbjct: 306 SQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYRR-GFNKNVELANALIDMYAKCGDI 364

Query: 237 EEAETLIENADCRHDSSLW-EVLLGACTTFRNAHVAERVAKKIME-LKPD 284
            ++E +    + R +   W  +++G  +    A   E   K +   ++PD
Sbjct: 365 PDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPD 414



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 119/243 (48%), Gaps = 7/243 (2%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG----DFESVIRIFRE 77
           ++ ++L+  Y + GLV+E+  +FD+M +++ V+ +A++ GY  +      +E    +F++
Sbjct: 46  ILATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQ 105

Query: 78  MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG-CVDF 136
               + F+   VL++C  +  L  G  VH   ++      + +++AL+++YA C   ++ 
Sbjct: 106 GRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEA 165

Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
           A  IF  + V+N +TW ++I+GF   G G   L+++  M               + A + 
Sbjct: 166 AFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASAS 225

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
           +  +  G++  AS+ K    +  +   N ++D   R G L EA+      + + D   W 
Sbjct: 226 IDSVTTGKQIHASVVKR-GFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDK-DLITWN 283

Query: 257 VLL 259
            L+
Sbjct: 284 TLI 286


>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
 gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
          Length = 601

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 203/339 (59%), Gaps = 7/339 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   +++HA V+  G   + ++ +SLV  Y  CG  D + +VFD+M  +++++ + L+  
Sbjct: 141 LAHARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITC 200

Query: 62  YCQTGDFESVIRIFREME------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           Y +    +  +++F  M       E D  +  ++L+AC  L AL  G++V    +     
Sbjct: 201 YTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYG 260

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            ++ + ++L+ +Y KCGCVD A+Q+F + P ++++TW++MISG A NG G++A+  F++M
Sbjct: 261 GELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEM 320

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  PD  +F GVLSACSH GL+D G K F  M  EY++KP + HY CMVDL+GRAGL
Sbjct: 321 GRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGL 380

Query: 236 LEEA-ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
           L++A E ++++     D+++W  LLGAC    +  + ERV   ++ELK      YVLL N
Sbjct: 381 LDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLN 440

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            Y AV  W    ++R LMK  G++  PG + +E N +++
Sbjct: 441 TYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIH 479



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 5/126 (3%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           + FS  IVL  C  LA  R   ++H   +      D ++ ++LV  YA CG  D A ++F
Sbjct: 127 NAFSLSIVLGHCRALAHAR---QLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVF 183

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT--EGGTKPDHVSFIGVLSACSHMGL 199
            +MPVR+ I WN +I+ + +N R ++AL++FD M   E G +PD V+ I +L AC+ +G 
Sbjct: 184 DEMPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGA 243

Query: 200 IDRGRK 205
           +D G K
Sbjct: 244 LDFGEK 249


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 196/336 (58%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++ G+ VH   +  G    +V + SSLVDMYGKC   D++ +VFD+M  +N V+ +AL+ 
Sbjct: 220 VRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIA 279

Query: 61  GYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q+  F+  + +F EM + D+     +   VL ACA + AL  G+ VHC  I+ S   
Sbjct: 280 GYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEI 339

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +    + L+DLY KCGC++ A  +F ++  +N+ TW +MI+GFA +G   +A  +F  M 
Sbjct: 340 NTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTML 399

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                P+ V+F+ VLSAC+H GL++ GR+ F SM   + ++ K +HY CMVDL GR GLL
Sbjct: 400 SSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLL 459

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA+ LIE       + +W  L G+C   ++  + +  A ++++L+P     Y LL N+Y
Sbjct: 460 EEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLY 519

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
                W++  ++R  MK   V K PG SWIE   KL
Sbjct: 520 SESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKL 555



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 133/243 (54%), Gaps = 6/243 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           + HA ++  GL  +  V +SL+  Y   GL D + R+FD    K+ V+ +A++ G+ + G
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIE 121
                +  F EM++  +     +   VL+A   +  +R G+ VH  Y+     K DV I 
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           S+LVD+Y KC C D A ++F +MP RN++TW ++I+G+ Q+   ++ + +F++M +    
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA 303

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+  +   VLSAC+H+G + RGR+    M K   I+        ++DL  + G LEEA  
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYMIKN-SIEINTTAGTTLIDLYVKCGCLEEAIL 362

Query: 242 LIE 244
           + E
Sbjct: 363 VFE 365



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 1/158 (0%)

Query: 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           + H   ++     D  + ++L+  Y+  G  DFA ++F     ++++TW +MI GF +NG
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
              EA+  F +M + G   + ++ + VL A   +  +  GR       +  R+K  +   
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           + +VD+ G+    ++A+ + +    R+  + W  L+  
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVT-WTALIAG 280


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 127/332 (38%), Positives = 200/332 (60%), Gaps = 7/332 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H  ++  G+  N  + ++L++MY +CG + E+  VF+    ++ +S ++++ G+ Q
Sbjct: 450 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQ 509

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVI 119
            G +E+  ++F+EM+    E D  +F  VL  C    AL LGK++H + I  SG + DV 
Sbjct: 510 HGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGR-ITESGLQLDVN 568

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEG 178
           + +AL+++Y +CG +  A  +F  +  R++++W +MI G A  G   +A+ +F  M  EG
Sbjct: 569 LGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEG 628

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
              PD  +F  +LSAC+H GL+  G + F+SM  EY + P IEHY C+V LLGRA   +E
Sbjct: 629 FRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQE 688

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AETLI       D+++WE LLGAC    N  +AE  A   ++L       Y+LL NVY A
Sbjct: 689 AETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAA 748

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
            GRW+D  KIR +M+  G++K PG+SWIE ++
Sbjct: 749 AGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDN 780



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 150/267 (56%), Gaps = 8/267 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H+ +   G   +V + ++L+ MY +CG + ++  +F  M K++ +S +A++ G
Sbjct: 346 LEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAG 405

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y +  D    +R++++M+   +     +F  +L ACA  +A   GK +H + I RSG K 
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIH-EDILRSGIKS 464

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + +AL+++Y +CG +  A  +F     R++I+WNSMI+G AQ+G  E A ++F +M 
Sbjct: 465 NGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQ 524

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               +PD+++F  VLS C +   ++ G++    +T E  ++  +   N ++++  R G L
Sbjct: 525 NEELEPDNITFASVLSGCKNPEALELGKQIHGRIT-ESGLQLDVNLGNALINMYIRCGSL 583

Query: 237 EEAETLIENADCRHDSSLWEVLLGACT 263
           ++A  +  +   R D   W  ++G C 
Sbjct: 584 QDARNVFHSLQHR-DVMSWTAMIGGCA 609



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 147/289 (50%), Gaps = 8/289 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK +H   +  GL  ++ V ++LV M  +CG VD + + F  +  ++ V  +AL+  
Sbjct: 245 LDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAA 304

Query: 62  YCQTGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G     FE   R+  +   ++  ++  +L AC+   AL  GK +H          D
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I +AL+ +YA+CG +  A ++F  MP R+LI+WN++I+G+A+     EA+R++  M  
Sbjct: 365 VQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQS 424

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP  V+F+ +LSAC++      G+     + +   IK      N ++++  R G L 
Sbjct: 425 EGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLM 483

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
           EA+ + E    R D   W  ++       +   A ++ +++   EL+PD
Sbjct: 484 EAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPD 531



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 143/264 (54%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L + K +HA+++  G+  ++ + + L++MY KC  V ++H+VF +M +++ +S ++L+  
Sbjct: 43  LPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISC 102

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +   ++F EM+        I    +L AC   A L  GK++H Q I+    +D
Sbjct: 103 YAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRD 162

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             ++++L+ +Y KCG +  A Q+F  +  R+++++N+M+  +AQ    +E L +F  M+ 
Sbjct: 163 PRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSS 222

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V++I +L A +   ++D G++    +T E  +   I     +V +  R G ++
Sbjct: 223 EGISPDKVTYINLLDAFTTPSMLDEGKR-IHKLTVEEGLNSDIRVGTALVTMCVRCGDVD 281

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A+   +    R D  ++  L+ A
Sbjct: 282 SAKQAFKGIADR-DVVVYNALIAA 304



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 100/182 (54%), Gaps = 4/182 (2%)

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E D  ++  +L+ C     L   K +H Q +      D+ + + L+++Y KC  V  AHQ
Sbjct: 24  ETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +MP R++I+WNS+IS +AQ G  ++A ++F++M   G  P+ +++I +L+AC     
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143

Query: 200 IDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           ++ G+K  + + K  Y+  P+++  N ++ + G+ G L  A  +      R D   +  +
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQ--NSLLSMYGKCGDLPRARQVFAGISPR-DVVSYNTM 200

Query: 259 LG 260
           LG
Sbjct: 201 LG 202



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H ++   GL  +V + ++L++MY +CG + ++  VF  +  ++ +S +A++ G
Sbjct: 548 LELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGG 607

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
               G+    I +F +M+       D  +F  +L AC     +  G ++        G  
Sbjct: 608 CADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVL 667

Query: 117 DVIIESA-LVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMI 156
             I     LV L  +      A  +  QMP   +   W +++
Sbjct: 668 PTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLL 709


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/319 (40%), Positives = 191/319 (59%), Gaps = 5/319 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NVV  S++V  Y K G ++ +  +FDKM  KN V+ + ++    Q G  E   R+F EM 
Sbjct: 328 NVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMM 387

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               E+D+ +   +L ACA   +L LGK +H    +R   +  ++ +AL+D++ KCGCV+
Sbjct: 388 DAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVN 447

Query: 136 FAHQIF-LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
            A  IF  ++  ++L++WN +I GFA +G GE+AL +F  M + G  PD V+ I VLSAC
Sbjct: 448 RADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSAC 507

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           +HMGL++ GR+ FA+M  +Y IKP+IEHY CMVDLLGR GL++EA  +I+      +  +
Sbjct: 508 THMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVI 567

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LL AC   +N   AE    ++  L+P    +Y +L N+Y   G+W+D  K R  MK 
Sbjct: 568 WGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKG 627

Query: 315 SGVKKMPGKSWIEANSKLN 333
           +G +K  G SWIE N   +
Sbjct: 628 TGSQKTAGSSWIELNEAFH 646



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 132/261 (50%), Gaps = 9/261 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   +  HA V+ LG   +  V ++L+D Y K   + ++ +VFD+M  ++ VS +  +  
Sbjct: 217 LTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAA 276

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL--RACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             + G+ ++   +F EM E D  S+  +L   A AG A      E   +  +R   ++V+
Sbjct: 277 MVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEA------EKAFELFQRMPGRNVV 330

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
             S +V  Y K G ++ A  IF +MP +NL+TW  M+S  AQ G  EEA R+F +M +  
Sbjct: 331 SWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAA 390

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            + D ++ + +L+AC+  G +  G++      ++ ++       N ++D+  + G +  A
Sbjct: 391 IELDVIAVVSILAACAESGSLALGKR-IHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRA 449

Query: 240 ETLIENADCRHDSSLWEVLLG 260
           + + +      D   W +++G
Sbjct: 450 DYIFDTEIVEKDLVSWNIIIG 470



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 128/290 (44%), Gaps = 21/290 (7%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSAL 58
           RL+  +E+HA+++  GL  +    S L+  Y     V     VF     L  +   SS  
Sbjct: 110 RLRHVQELHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTT 169

Query: 59  L------QGYCQTGDFESVIRIFRE--MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYI 110
           L      + Y       + + +F +  + +   F++  +++A A  A L   +  H   +
Sbjct: 170 LLTKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAA-AGLTPVRGAHAHVV 228

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
           +    +D  + +AL+D Y+K   +  A ++F +M  R++++WN+ ++   + G  + A  
Sbjct: 229 KLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARS 288

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +FD+M E     D VS+  +L   +  G  ++  + F  M         +  ++ +V   
Sbjct: 289 MFDEMPEK----DTVSWNTMLDGYAKAGEAEKAFELFQRMPGR-----NVVSWSTVVSAY 339

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
            + G +E A  + +    ++  + W +++ AC        A R+  ++M+
Sbjct: 340 CKKGDMEMARVIFDKMPAKNLVT-WTIMVSACAQKGLVEEAGRLFTEMMD 388



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 7/164 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD-KMLKKNSVSSSALLQ 60
           L  GK +H  V    L  + +V ++L+DM+ KCG V+ +  +FD ++++K+ VS + ++ 
Sbjct: 411 LALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIG 470

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+   G  E  + +F +M++     D  +   VL AC  +  +  G+          G K
Sbjct: 471 GFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIK 530

Query: 117 DVIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
             I     +VDL  + G +  A  +  +MP   N + W S++S 
Sbjct: 531 PQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSA 574


>gi|222616388|gb|EEE52520.1| hypothetical protein OsJ_34732 [Oryza sativa Japonica Group]
          Length = 462

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 125/339 (36%), Positives = 191/339 (56%), Gaps = 36/339 (10%)

Query: 30  MYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSF--- 86
           MY KCG  D+  +VFD M  KNSV  +AL+ GY   G  E  +++FR M   +LF++   
Sbjct: 1   MYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTAL 60

Query: 87  ---------------------------------GIVLRACAGLAALRLGKEVHCQYIRRS 113
                                             IV+   A LAA  LG+++H   +R  
Sbjct: 61  ISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLG 120

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              ++I+ +AL+D+Y+KC  +  A ++F  +  R++I+W +M+ G AQ+GR EEAL ++D
Sbjct: 121 FLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYD 180

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M   G KP+ V+F+G++ ACSH GL+ +GR+ F SM  EY I P+++HY C +DLL R+
Sbjct: 181 RMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRS 240

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           G L EAE L+       D + W  LL ACT +++A +  R++ K++EL+P    +Y+LL 
Sbjct: 241 GHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLS 300

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           NVY   G+W+   K+R  M    ++K PG SWIEA  + 
Sbjct: 301 NVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREF 339



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 87/179 (48%), Gaps = 6/179 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H   + LG   N++V ++L+DMY KC  +  +  VF+ +  ++ +S + ++ G  Q
Sbjct: 109 GRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQ 168

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + ++  M     + +  +F  ++ AC+    ++ G+++        G    + 
Sbjct: 169 HGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQ 228

Query: 121 E-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +  +DL ++ G +  A ++   MP   +  TW +++S   +    E  +RI D + E
Sbjct: 229 HYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLE 287


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/337 (37%), Positives = 199/337 (59%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQ 60
           L QG  +H  ++ LG   +  V+++L+DMY KCG +  +  +F+K    K+ V+ + ++ 
Sbjct: 547 LDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIA 606

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y Q G  +  I  F +M       +  +F  VL A A LAA R G   H   I+     
Sbjct: 607 AYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLS 666

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + ++ ++L+D+YAKCG +D++ ++F +M  ++ ++WN+M+SG+A +G G+ A+ +F  M 
Sbjct: 667 NTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQ 726

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E   + D VSF+ VLSAC H GL++ GRK F SM+ +Y IKP +EHY CMVDLLGRAGL 
Sbjct: 727 ESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLF 786

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +E    I+      D+ +W  LLG+C    N  + E     +++L+P     +V+L ++Y
Sbjct: 787 DETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIY 846

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              GRW DA K R+ M   G+KK PG SW+E  +K++
Sbjct: 847 AQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVH 883



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 146/278 (52%), Gaps = 7/278 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GKE+H   +   +  +++V + L+ MY KCG  +++ ++F  +  ++ V+ SA++  
Sbjct: 345 LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             QTG  E  + +F+EM+   +     +   +L ACA L+ L+LGK +HC  ++     D
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +   +ALV +YAKCG    A   F +M  R+++TWNS+I+G+AQ G    A+ +F  +  
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               PD  + +GV+ AC+ +  +D+G      + K    +      N ++D+  + G L 
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVK-LGFESDCHVKNALIDMYAKCGSLP 583

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA 275
            AE L    D   D   W V++ A    +N H  E ++
Sbjct: 584 SAEFLFNKTDFTKDEVTWNVIIAA--YMQNGHAKEAIS 619



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 23  VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME--- 79
           V + L+D+Y KCG VD + RVFD+M+ ++ VS   ++ GY   G F  V+ +F +M+   
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 80  -EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
             I+  S      A A    L  GKE+H   +++    D+++ + L+ +YAKCG  + A 
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAK 384

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           Q+F  +  R+L+ W+++I+   Q G  EEAL +F +M     KP+ V+ + +L AC+ + 
Sbjct: 385 QLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLS 444

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           L+  G K     T +  +   +     +V +  + G    A T       R D   W  L
Sbjct: 445 LLKLG-KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSL 502

Query: 259 L 259
           +
Sbjct: 503 I 503



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 8/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G   H ++   GL  +V + + LVDMY K G +  +  VFDKM K++ V+ +A++ G
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG 204

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q+ D    +  FR M+    E    S   +      L+ + L + +H    RR     
Sbjct: 205 LSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA 264

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   + L+DLY+KCG VD A ++F QM  ++ ++W +M++G+A NG   E L +FD M  
Sbjct: 265 V--SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL 322

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  + + VS +    A +    +++G++      ++ RI   I     ++ +  + G  E
Sbjct: 323 GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQ-RIDSDILVATPLMVMYAKCGETE 381

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           +A+ L      R D   W  ++ A
Sbjct: 382 KAKQLFWGLQGR-DLVAWSAIIAA 404



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 127/259 (49%), Gaps = 10/259 (3%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++HA++I  G   +  + + L+++Y      D +  VFD     + +  +++++ Y ++ 
Sbjct: 50  QIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK 108

Query: 67  DFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
            +   + ++  M E     D ++F  VL+AC G   L+ G   H +  RR   +DV I +
Sbjct: 109 QYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGA 168

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            LVD+Y+K G +  A ++F +MP R+++ WN+MI+G +Q+    EA+  F  M   G +P
Sbjct: 169 GLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEP 228

Query: 183 DHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
             VS + +      +  I+  R  H     +++         N ++DL  + G ++ A  
Sbjct: 229 SSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVS----NGLIDLYSKCGDVDVARR 284

Query: 242 LIENADCRHDSSLWEVLLG 260
           + +    + D S   ++ G
Sbjct: 285 VFDQMVDQDDVSWGTMMAG 303


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/332 (37%), Positives = 194/332 (58%), Gaps = 4/332 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++VHA    +GL  +  V + L+D Y KCG +D + +VF +    + +SS+ ++    Q 
Sbjct: 429 RQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQC 488

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
              E  I++F +M     E D F    +L AC  L+A   GK+VH   I+R    DV   
Sbjct: 489 DHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAG 548

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALV  YAKCG ++ A   F  +P R +++W++MI G AQ+G G+ AL +F  M + G  
Sbjct: 549 NALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVA 608

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+H++   VLSAC+H GL+D  +K+F SM + + I    EHY CM+D+LGRAG LE+A  
Sbjct: 609 PNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAME 668

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L+ N   + ++++W  LLGA    R+  +    A+K+  L+P+   ++VLL N Y + G 
Sbjct: 669 LVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGM 728

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           W++  K+R LMK S VKK P  SW+E   K++
Sbjct: 729 WDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVH 760



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 139/270 (51%), Gaps = 10/270 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML----KKNSVSSSA 57
           ++ G +VHA  +   L  +V V ++LV +YG  G+VDE+ R+FD+ +    ++N+VS + 
Sbjct: 116 VRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNT 175

Query: 58  LLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           ++  Y +       I +FREM    E  + F F  V+ AC G   L  G++VH   +R  
Sbjct: 176 MISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTG 235

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
             KDV   +ALVD+Y+K G ++ A  +F +MP  ++++WN+ ISG   +G    AL +  
Sbjct: 236 YEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLL 295

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M   G  P+  +   VL AC+  G  + GR+    M K      +      +VD+  + 
Sbjct: 296 QMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG-LVDMYAKH 354

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACT 263
           G L++A  + +    R D  LW  L+  C+
Sbjct: 355 GFLDDARKVFDFMP-RRDLILWNALISGCS 383



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 4/186 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VH  V+  G   +V   ++LVDMY K G ++ +  VF+KM   + VS +A + G
Sbjct: 221 LEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISG 280

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +  +M+      ++F+   VL+ACAG  A  LG+++H   ++     D
Sbjct: 281 CVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFD 340

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +   LVD+YAK G +D A ++F  MP R+LI WN++ISG + +GR  E L +F  M +
Sbjct: 341 EFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRK 400

Query: 178 GGTKPD 183
            G   D
Sbjct: 401 EGLDLD 406



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 25/304 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  +H+ ++  GL       + L+ +Y +C L   +  VFD++     VS S+L+  
Sbjct: 20  LFAGAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTA 77

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     +  FR M       + F+  +VL+ CA    +R G +VH   +      D
Sbjct: 78  YSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLK-CA--PDVRFGAQVHALAVATRLVHD 134

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQM----PVRNLITWNSMISGFAQNGRGEEALRIFD 173
           V + +ALV +Y   G VD A ++F +       RN ++WN+MIS + +N +  +A+ +F 
Sbjct: 135 VFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFR 194

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGR 232
           +M   G +P+   F  V++AC+    ++ GR+ H A +   Y  +  +   N +VD+  +
Sbjct: 195 EMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGY--EKDVFTANALVDMYSK 252

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
            G +E A T+ E      D   W   +  C T  + H   R  + ++++K     S  L+
Sbjct: 253 LGDIEMAATVFEKMPAA-DVVSWNAFISGCVTHGHDH---RALELLLQMK-----SSGLV 303

Query: 293 DNVY 296
            NV+
Sbjct: 304 PNVF 307



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 131/262 (50%), Gaps = 8/262 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H  ++      +  V   LVDMY K G +D++ +VFD M +++ +  +AL+ G   
Sbjct: 325 GRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSH 384

Query: 65  TGDFESVIRIFREM--EEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            G    V+ +F  M  E +DL     +   VL++ A   A+   ++VH    +     D 
Sbjct: 385 DGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDS 444

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + L+D Y KCG +D+A ++F +    ++I+  +M++  +Q   GE+A+++F  M   
Sbjct: 445 HVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRK 504

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD      +L+AC+ +   ++G++  A + K  +    +   N +V    + G +E+
Sbjct: 505 GLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKR-QFTSDVFAGNALVYAYAKCGSIED 563

Query: 239 AETLIENADCRHDSSLWEVLLG 260
           A+        R   S W  ++G
Sbjct: 564 ADMAFSGLPERGIVS-WSAMIG 584



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +QGK+VHA +I      +V   ++LV  Y KCG ++++   F  + ++  VS SA++ G 
Sbjct: 527 EQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGL 586

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G  +  + +F  M +     +  +   VL AC   A L    + + + ++ +   D 
Sbjct: 587 AQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSAC-NHAGLVDDAKKYFESMKETFGIDR 645

Query: 119 IIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
             E  + ++D+  + G ++ A ++   MP + N   W +++
Sbjct: 646 TEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALL 686


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 130/305 (42%), Positives = 185/305 (60%), Gaps = 5/305 (1%)

Query: 30  MYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFS 85
           MY KCGLV+++ +VFD M ++N V  ++++ GY Q G F+  +++FR+M+    + D  +
Sbjct: 274 MYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDAT 333

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              V+ +C  + AL LG+ VH         K + ++++L+D+Y+KCG +  AH+IF  + 
Sbjct: 334 IATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLV 393

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDHVSFIGVLSACSHMGLIDRGR 204
            R+  +W  MI GFA NG   EAL +F  M E G   P+ ++F+GVL++CSH GL+++G 
Sbjct: 394 KRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGY 453

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
            HF  M+K Y I P+IEHY CMVDLLGRA LL EAE  IE      D ++W  LL AC  
Sbjct: 454 HHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLLFACRA 513

Query: 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324
                +AE VA+++ EL+P      VLL NVY    RW D  K+RT M  S V K PG S
Sbjct: 514 RGEVGLAEYVAERVEELEPSRCGGNVLLSNVYATTSRWVDVNKVRTGMGRSRVSKRPGCS 573

Query: 325 WIEAN 329
            IE N
Sbjct: 574 VIEVN 578



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 141/287 (49%), Gaps = 31/287 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G++VH  V   G   +  + ++LVD+Y +CG +D++ RVFD++L K++   + ++  
Sbjct: 120 LREGEQVHVHVFKNGFQTDERIATTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAA 179

Query: 62  YCQTGDFESVIRIFREMEEI----------------DLFSFGIVLRACAGLAALRLGKEV 105
           Y + G+ E    +F  M E                 D+ S   V     G+  + L   +
Sbjct: 180 YMEAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDMDSAKHVFEMANGVVNMVLCTAM 239

Query: 106 HCQYIRRSGC------------KDVIIESALVD-LYAKCGCVDFAHQIFLQMPVRNLITW 152
              + +                +DV   + ++  +YAKCG V+ A ++F  MP RN++ W
Sbjct: 240 ISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCW 299

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            SMISG+ Q G+ ++A+++F DM   G K D  +   V+S+C  MG +D GR +  +   
Sbjct: 300 TSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGR-YVHAYCD 358

Query: 213 EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            + +   I   N ++D+  + G +++A  +      R D S W V++
Sbjct: 359 VHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFS-WTVMI 404



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 143/317 (45%), Gaps = 17/317 (5%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +Q +++HA+ + LG   +  V + LV  +   G +  +  V        S SS+A     
Sbjct: 28  RQLEQLHARAVLLGHARSSFVAAKLVRAFADLGHLRAARAVAAVRAHSQSGSSAAARDAV 87

Query: 63  CQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
                        R +     F+   VL+A A    LR G++VH    +     D  I +
Sbjct: 88  ALYAQMHRGCPGVRPLT----FTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIAT 143

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            LVDLYA+CG +D A ++F ++ V++   +N+MI+ + + G  E A  +F+ M E  T  
Sbjct: 144 TLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTH- 202

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
              + + ++   S  G +D   KH   M         +     M+    + G +++A ++
Sbjct: 203 ---TLMEMVGGYSARGDMDSA-KHVFEMANGV---VNMVLCTAMISGFAKTGSVDDARSV 255

Query: 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH-LSYVLLDNVYRAVGR 301
            +    R D + W V++G    +    + E  A+K+ +  P+ + + +  + + Y  VG+
Sbjct: 256 FDGMRQR-DVATWNVMIG--VMYAKCGLVED-ARKVFDAMPERNVVCWTSMISGYTQVGK 311

Query: 302 WNDAFKIRTLMKYSGVK 318
           +  A K+   M+ SGVK
Sbjct: 312 FKQAVKLFRDMQISGVK 328



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VHA     GL   + V++SL+DMY KCG + ++H +F  ++K++  S + ++ G
Sbjct: 347 LDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMG 406

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           +   G     + +F +MEE      +  +F  VL +C+    +  G     +  +  G  
Sbjct: 407 FAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIA 466

Query: 117 DVIIE-SALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEAL 169
             I     +VDL  +   +  A Q   +MP+  ++  W S++  FA   RGE  L
Sbjct: 467 PRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLL--FACRARGEVGL 519


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/319 (40%), Positives = 191/319 (59%), Gaps = 5/319 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NVV  S++V  Y K G ++ +  +FDKM  KN V+ + ++    Q G  E   R+F EM 
Sbjct: 256 NVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMM 315

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               E+D+ +   +L ACA   +L LGK +H    +R   +  ++ +AL+D++ KCGCV+
Sbjct: 316 DAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVN 375

Query: 136 FAHQIF-LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
            A  IF  ++  ++L++WN +I GFA +G GE+AL +F  M + G  PD V+ I VLSAC
Sbjct: 376 RADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSAC 435

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           +HMGL++ GR+ FA+M  +Y IKP+IEHY CMVDLLGR GL++EA  +I+      +  +
Sbjct: 436 THMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVI 495

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LL AC   +N   AE    ++  L+P    +Y +L N+Y   G+W+D  K R  MK 
Sbjct: 496 WGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKG 555

Query: 315 SGVKKMPGKSWIEANSKLN 333
           +G +K  G SWIE N   +
Sbjct: 556 TGSQKTAGSSWIELNEAFH 574



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 130/254 (51%), Gaps = 9/254 (3%)

Query: 9   HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF 68
           HA V+ LG   +  V ++L+D Y K   + ++ +VFD+M  ++ VS +  +    + G+ 
Sbjct: 152 HAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEV 211

Query: 69  ESVIRIFREMEEIDLFSFGIVL--RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVD 126
           ++   +F EM E D  S+  +L   A AG A      E   +  +R   ++V+  S +V 
Sbjct: 212 DAARSMFDEMPEKDTVSWNTMLDGYAKAGEA------EKAFELFQRMPGRNVVSWSTVVS 265

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
            Y K G ++ A  IF +MP +NL+TW  M+S  AQ G  EEA R+F +M +   + D ++
Sbjct: 266 AYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIA 325

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
            + +L+AC+  G +  G++      ++ ++       N ++D+  + G +  A+ + +  
Sbjct: 326 VVSILAACAESGSLALGKR-IHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTE 384

Query: 247 DCRHDSSLWEVLLG 260
               D   W +++G
Sbjct: 385 IVEKDLVSWNIIIG 398



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 128/290 (44%), Gaps = 21/290 (7%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSAL 58
           RL+  +E+HA+++  GL  +    S L+  Y     V     VF     L  +   SS  
Sbjct: 38  RLRHVQELHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTT 97

Query: 59  L------QGYCQTGDFESVIRIFRE--MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYI 110
           L      + Y       + + +F +  + +   F++  +++A A  A L   +  H   +
Sbjct: 98  LLTKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAA-AGLTPVRGAHAHVV 156

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
           +    +D  + +AL+D Y+K   +  A ++F +M  R++++WN+ ++   + G  + A  
Sbjct: 157 KLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARS 216

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +FD+M E     D VS+  +L   +  G  ++  + F  M         +  ++ +V   
Sbjct: 217 MFDEMPEK----DTVSWNTMLDGYAKAGEAEKAFELFQRMPGR-----NVVSWSTVVSAY 267

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
            + G +E A  + +    ++  + W +++ AC        A R+  ++M+
Sbjct: 268 CKKGDMEMARVIFDKMPAKNLVT-WTIMVSACAQKGLVEEAGRLFTEMMD 316



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 7/164 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD-KMLKKNSVSSSALLQ 60
           L  GK +H  V    L  + +V ++L+DM+ KCG V+ +  +FD ++++K+ VS + ++ 
Sbjct: 339 LALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIG 398

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+   G  E  + +F +M++     D  +   VL AC  +  +  G+          G K
Sbjct: 399 GFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIK 458

Query: 117 DVIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
             I     +VDL  + G +  A  +  +MP   N + W S++S 
Sbjct: 459 PQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSA 502


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 134/335 (40%), Positives = 198/335 (59%), Gaps = 7/335 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +H  VI      N+V+ ++++DMY K G   E+  +FD++  ++ VS + ++ G
Sbjct: 219 LCTGKGIHG-VIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITG 277

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
             Q+   +  + +F  M  +    D      VL ACA L  L  G  VH +YI + G K 
Sbjct: 278 LVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVH-EYINQRGIKW 336

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+ I +A+VD+YAKCGC++ A +IF  M  RN  TWN+++ G A +G   EAL +F+ M 
Sbjct: 337 DIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMI 396

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+ ++F+ +L+AC H GL+D GRK+F +M+K Y + PK+EHY CM+DL  RAGLL
Sbjct: 397 ISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLL 456

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA  L      + D  +W +LL ACTT  N  ++ R+   I+EL  D    +VLL N+ 
Sbjct: 457 EEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSNIS 516

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
               RW++  ++R LMK  GV+K PG S IE + K
Sbjct: 517 AINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDGK 551



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 142/262 (54%), Gaps = 12/262 (4%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           ++G++VH  V+ LGL  +  V++SL+  YG CG    + +VFD+ML ++ VS ++L+ G+
Sbjct: 122 REGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGF 181

Query: 63  CQTGDFESVIRIFREME-EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
            + G F+  I +F  M+ E  + +   VL ACA    L  GK +H   I R    ++++ 
Sbjct: 182 MKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIH-GVIERRFKVNLVLG 240

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +A++D+Y K GC   A  IF ++P R++++W  MI+G  Q+   +++L +F  M   G  
Sbjct: 241 NAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGIS 300

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY----RIKPKIEHYNCMVDLLGRAGLLE 237
           PD +    VLSAC+ +G +D     F +   EY     IK  I     +VD+  + G +E
Sbjct: 301 PDAIILTSVLSACASLGTLD-----FGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIE 355

Query: 238 EAETLIENADCRHDSSLWEVLL 259
            A  +  +   R ++  W  LL
Sbjct: 356 MALKIFYSMSQR-NTFTWNALL 376



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 139/267 (52%), Gaps = 18/267 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN----SVSSSA 57
           L+  +++HA+++T GL  +  V S +++ +     V+      D + + N    S   ++
Sbjct: 18  LRIFRQIHAQLVTSGLVYDDFVTSKVMEFFAN--FVEYGDYACDYLEQGNTRLGSFPFNS 75

Query: 58  LLQGYCQTGDFESV-IRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           L+ GY   G+F  + + ++R M       D+F+F ++L+AC+  +  R G++VH   ++ 
Sbjct: 76  LINGYVG-GEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKL 134

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               D  ++++L+  Y  CG    A ++F +M VR++++WNS+ISGF + G  +EA+ +F
Sbjct: 135 GLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVF 194

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
             M     +P   + + VL+AC+  G +  G+     +  E R K  +   N M+D+  +
Sbjct: 195 FRMD---VEPSMTTLVSVLAACARNGDLCTGKGIHGVI--ERRFKVNLVLGNAMLDMYVK 249

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLL 259
            G   EA+ + +    R D   W +++
Sbjct: 250 NGCFYEAKNIFDELPTR-DIVSWTIMI 275


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 208/344 (60%), Gaps = 17/344 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+V A    +G   N+ V++S + +Y + G  DE+ R+F++M   + ++ +A++ GY Q
Sbjct: 298 GKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQ 357

Query: 65  TGD------------FESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQ 108
             D            F++ +++FR++     + DLF+F  +L  C+ + AL  G+++H  
Sbjct: 358 IMDSAKDDLHARSRGFQA-LKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHAN 416

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
            I+     DV++ SALV++Y KCG ++ A + F++MP R  +TW SMISG++Q+GR ++A
Sbjct: 417 TIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDA 476

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           +++F+DM   G +P+ ++F+ +LSACS+ GL++   ++F  M  EY I+P ++HY CMVD
Sbjct: 477 IQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVD 536

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288
           +  R G L++A + I+      + ++W  L+  C +  N  +A   A +++ELKP    +
Sbjct: 537 MFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIET 596

Query: 289 YVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           YVLL N+Y + GRW D  ++R L K+  V  +  +SWI    K+
Sbjct: 597 YVLLLNMYISTGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKV 640



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 121/251 (48%), Gaps = 6/251 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   + +H  ++  G   ++ V +SLV++Y +C    ++ R+FD M  KN V+ +AL+ G
Sbjct: 92  LGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKNVVTWTALITG 151

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +    +    + +F EM E+      ++ G +L AC+    + LG++VH   I+      
Sbjct: 152 HTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGADTI 211

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG-EEALRIFDDMT 176
             + ++L  LY K G ++   + F   P +N+ITW +MIS  A++    +  L +F DM 
Sbjct: 212 TSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDML 271

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           EGG  P+  +   V+S C     +  G K   +   +   +  +   N  + L  R G  
Sbjct: 272 EGGVMPNEFTLTSVMSLCGARLDMSLG-KQVQAFCYKVGCEANLPVKNSTMYLYLRKGET 330

Query: 237 EEAETLIENAD 247
           +EA  L E  D
Sbjct: 331 DEAMRLFEEMD 341



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 18/229 (7%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+  G++VH   I  G      + +SL  +Y K G ++   R F     KN ++ + ++ 
Sbjct: 192 RIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMIS 251

Query: 61  GYCQTGDFESV-IRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
              +  ++  + + +F +M E     + F+   V+  C     + LGK+V   +  + GC
Sbjct: 252 SCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQA-FCYKVGC 310

Query: 116 K-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-----------NG 163
           + ++ ++++ + LY + G  D A ++F +M   ++ITWN+MISG+AQ             
Sbjct: 311 EANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARS 370

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           RG +AL++F D+     KPD  +F  +LS CS M  +++G +  A+  K
Sbjct: 371 RGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIK 419



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 11/202 (5%)

Query: 10  AKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ----- 64
           A + +L + G      ++V +         +   FDK       S+ AL  G  +     
Sbjct: 2   ASIPSLAVSGAATAVPAVVPLKPP-----PTSAAFDKGTSYQRSSAQALENGRLEHESPP 56

Query: 65  -TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
              D +  + + R+ + +    +  +L  C     L   + +H   ++     D+ + ++
Sbjct: 57  RPLDAQEAMGMLRDGQTVQSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATS 116

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           LV++Y +C     A ++F  MP +N++TW ++I+G   N     AL +F +M E G  P 
Sbjct: 117 LVNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPS 176

Query: 184 HVSFIGVLSACSHMGLIDRGRK 205
           H +  G+LSACS    ID G++
Sbjct: 177 HYTLGGMLSACSAARRIDLGQQ 198



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 94/183 (51%), Gaps = 8/183 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+++HA  I  G   +VVV S+LV+MY KCG ++ + + F +M  +  V+ ++++ G
Sbjct: 407 LEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISG 466

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I++F +M       +  +F  +L AC+  A L    E +   +R     +
Sbjct: 467 YSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACS-YAGLVEEAERYFDMMRNEYHIE 525

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDD 174
            +++    +VD++ + G +D A     +     N   W+S+++G   +G  E A    D 
Sbjct: 526 PLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADR 585

Query: 175 MTE 177
           + E
Sbjct: 586 LLE 588


>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 594

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 208/344 (60%), Gaps = 17/344 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+V A    +G   N+ V++S + +Y + G  DE+ R+F++M   + ++ +A++ GY Q
Sbjct: 116 GKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQ 175

Query: 65  TGD------------FESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQ 108
             D            F++ +++FR++     + DLF+F  +L  C+ + AL  G+++H  
Sbjct: 176 IMDSAKDDLHARSRGFQA-LKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHAN 234

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
            I+     DV++ SALV++Y KCG ++ A + F++MP R  +TW SMISG++Q+GR ++A
Sbjct: 235 TIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDA 294

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           +++F+DM   G +P+ ++F+ +LSACS+ GL++   ++F  M  EY I+P ++HY CMVD
Sbjct: 295 IQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVD 354

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288
           +  R G L++A + I+      + ++W  L+  C +  N  +A   A +++ELKP    +
Sbjct: 355 MFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIET 414

Query: 289 YVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           YVLL N+Y + GRW D  ++R L K+  V  +  +SWI    K+
Sbjct: 415 YVLLLNMYISTGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKV 458



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 18/229 (7%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+  G++VH   I  G      + +SL  +Y K G ++   R F     KN ++ + ++ 
Sbjct: 10  RIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMIS 69

Query: 61  GYCQTGDFESV-IRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
              +  ++  + + +F +M E     + F+   V+  C     + LGK+V   +  + GC
Sbjct: 70  SCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQA-FCYKVGC 128

Query: 116 K-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-----------NG 163
           + ++ ++++ + LY + G  D A ++F +M   ++ITWN+MISG+AQ             
Sbjct: 129 EANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARS 188

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           RG +AL++F D+     KPD  +F  +LS CS M  +++G +  A+  K
Sbjct: 189 RGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIK 237



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 94/183 (51%), Gaps = 8/183 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+++HA  I  G   +VVV S+LV+MY KCG ++ + + F +M  +  V+ ++++ G
Sbjct: 225 LEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISG 284

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  I++F +M       +  +F  +L AC+  A L    E +   +R     +
Sbjct: 285 YSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACS-YAGLVEEAERYFDMMRNEYHIE 343

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDD 174
            +++    +VD++ + G +D A     +     N   W+S+++G   +G  E A    D 
Sbjct: 344 PLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADR 403

Query: 175 MTE 177
           + E
Sbjct: 404 LLE 406



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 2/160 (1%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +L AC+    + LG++VH   I+        + ++L  LY K G ++   + F   P +N
Sbjct: 1   MLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKN 60

Query: 149 LITWNSMISGFAQNGRG-EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           +ITW +MIS  A++    +  L +F DM EGG  P+  +   V+S C     +  G K  
Sbjct: 61  VITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLG-KQV 119

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
            +   +   +  +   N  + L  R G  +EA  L E  D
Sbjct: 120 QAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMD 159


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 212/340 (62%), Gaps = 5/340 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+ +H+ VI  G    + V++SL+ +Y  CG V  +++VFDKM +K+ V+ ++++ G
Sbjct: 137 VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 196

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + + G  E  + ++ EM     + D F+   +L ACA + AL LGK VH   I+    ++
Sbjct: 197 FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 256

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           +   + L+DLYA+CG V+ A  +F +M  +N ++W S+I G A NG G+EA+ +F  M +
Sbjct: 257 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMES 316

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P  ++F+G+L ACSH G++  G ++F  M +EY+I+P+IEH+ CMVDLL RAG +
Sbjct: 317 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQV 376

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           ++A   I++   + +  +W  LLGACT   ++ +AE    +I++L+P+    YVLL N+Y
Sbjct: 377 KKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMY 436

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            +  RW+D  KIR  M   GVKK+PG S +E  ++++  L
Sbjct: 437 ASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFL 476



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 133/227 (58%), Gaps = 7/227 (3%)

Query: 40  SHRVFDKMLKK-NSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFGIVLRAC 93
           +H+VF K+ K  N    + L++GY + G+  S   ++REM      E D  ++  +++A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131

Query: 94  AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
             +A +RLG+ +H   IR      + ++++L+ LYA CG V  A+++F +MP ++L+ WN
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           S+I+GFA+NG+ EEAL ++ +M   G KPD  + + +LSAC+ +G +  G++    M K 
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK- 250

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             +   +   N ++DL  R G +EEA+TL +    ++  S   +++G
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG 297


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 130/337 (38%), Positives = 202/337 (59%), Gaps = 6/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GKE+HA ++  G  G+V V ++L+D+Y + G V  +  VF  M  KN VS SA++  
Sbjct: 195 LRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIAC 254

Query: 62  YCQTGDFESVIRIFREM--EEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGC 115
           Y +       + +F+ M  E  D     I    VL+ACA LAAL  GK VH   +RR   
Sbjct: 255 YAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLD 314

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             + + + L+ +Y +CG +    ++F  M  R++I+WNS+IS +  +G G++A++IF++M
Sbjct: 315 STLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENM 374

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  P +++FI VL ACSH GL++  +  F SM  +YRI P++EHY CMVD+LGRA  
Sbjct: 375 INRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANR 434

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L+EA  LI+N D +   ++W  LLG+C    N  +AER +  + EL+P    +YVLL ++
Sbjct: 435 LDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHI 494

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           Y     WND  ++R  ++  G++K+P  SWIE   K+
Sbjct: 495 YAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKI 531



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 136/269 (50%), Gaps = 12/269 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G +VH +++  GL  +  + + L++MY   G VD + +VFD+  +K     +A+ + 
Sbjct: 90  LSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRA 149

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACA----GLAALRLGKEVHCQYIRRS 113
                  E ++ ++ +M  I +    F++  VL+AC      +  LR GKE+H   +R  
Sbjct: 150 LAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHG 209

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
               V + + L+D+YA+ G V +A  +F  MP +N+++W++MI+ +A+N    +AL +F 
Sbjct: 210 YEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQ 269

Query: 174 DMTEGG--TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
            M      T P+ ++ + VL AC+ +  ++ G+   A + +   +   +   N ++ + G
Sbjct: 270 IMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRR-GLDSTLPVLNTLITMYG 328

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLG 260
           R G +   + + +    R D   W  L+ 
Sbjct: 329 RCGEISTGQRVFDYMKKR-DVISWNSLIS 356



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 66/137 (48%)

Query: 58  LLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           L+Q  C+ G+ +  +++          +F +++ +C    +L  G +VH + +     +D
Sbjct: 49  LIQSLCRGGNLKQAVQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQD 108

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + + L+++Y   G VD A ++F +   + +  WN++    A   RGE+ L ++  M  
Sbjct: 109 PYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNW 168

Query: 178 GGTKPDHVSFIGVLSAC 194
            G   +  ++  VL AC
Sbjct: 169 IGIPSNRFTYTYVLKAC 185


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 202/363 (55%), Gaps = 36/363 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++HA         + VV+SSL+DMY KCG+  ++ +VFD +  KNSV  +AL+ G
Sbjct: 119 LRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISG 178

Query: 62  YC-------------------------------QTGDFESVIRIFREMEEIDL-----FS 85
           Y                                + G++   + +F EM   D+     F 
Sbjct: 179 YASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFV 238

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              V+   A LAAL LG+++H   +R      +I+ +ALVD+Y+KC  +  A ++F  + 
Sbjct: 239 LATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGIT 298

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           VR++I+W +++ G AQ+GR EE   +++ M   G KP+ V+F+G++ ACSH GL+ +GR+
Sbjct: 299 VRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQ 358

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F SM +EY +KP ++HY C +DLL R+G L EAE LI       D + W  LL AC   
Sbjct: 359 LFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKH 418

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            +  +  RVA  ++EL+P    +Y+LL NVY    +W+   K+R +M    ++K+PG SW
Sbjct: 419 NDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSW 478

Query: 326 IEA 328
           +EA
Sbjct: 479 VEA 481



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 5/179 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + VHA+++  GL       + LV  Y +  L+ ++ R FD   +++    SALL     +
Sbjct: 21  RRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHS 80

Query: 66  GDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            D E V+ + R M   D      F    +  A   L +LRLG+++H  +       D ++
Sbjct: 81  SDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVV 140

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +S+L+D+Y KCG    A ++F  + V+N + W ++ISG+A NG   EAL +F  M   G
Sbjct: 141 KSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHG 199



 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 100 RLGKEVHCQYIRRSGCKDVIIESA-LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
           R  + VH + ++  G  D+    A LV  YA+   +  A + F   P R+L  ++++++ 
Sbjct: 18  RAVRRVHARLLKE-GLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAA 76

Query: 159 FAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRK---HFASMTKEY 214
            + +   E  L +   M ++   +PDH     + SA   +  +  GR+   HFA+    Y
Sbjct: 77  VSHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAA--SPY 134

Query: 215 RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
                ++  + ++D+  + G+ ++A  + ++   + +S +W  L+
Sbjct: 135 SADNVVK--SSLIDMYCKCGVPQDARKVFDSIGVK-NSVVWTALI 176


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 197/330 (59%), Gaps = 5/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G  VH  ++  G+  +VV  +SLVDMY K GL+D + RVF  M+ +N VS SA++ G
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +  +R+FR M+    + D  +    L AC+ +  L+LG+ VH   +RR    +
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDF-N 343

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            I+ +A +D+Y+KCG +  A  +F  +  R+LI WN+MI+    +GRG++AL +F +M E
Sbjct: 344 CILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNE 403

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PDH +F  +LSA SH GL++ G+  F  M   ++I P  +HY C+VDLL R+GL+E
Sbjct: 404 TGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVE 463

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  L+ +       ++W  LL  C   +   + E +A  I+EL+PD      L+ N+Y 
Sbjct: 464 EASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYA 523

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           A  +W+   ++R LMK SG KKMPG S IE
Sbjct: 524 ATKKWDKVRQVRKLMKDSGSKKMPGCSSIE 553



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 158/302 (52%), Gaps = 20/302 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ V  +    G   +V V SSL+ +Y + G + ++ +VF +M +++ V+ S ++ G
Sbjct: 124 LRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAG 183

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     I+++R M E  +    +V+    +AC     +R+G  VH   +R     D
Sbjct: 184 FVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMD 243

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V+  ++LVD+YAK G +D A ++F  M  RN ++W++MISGFAQNG+ +EALR+F +M  
Sbjct: 244 VVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQA 303

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM-----VDLLGR 232
            G +PD  + +  L ACS++G +  GR     + + +        +NC+     +D+  +
Sbjct: 304 SGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRF-------DFNCILGTAAIDMYSK 356

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
            G L  A+ L  N     D  LW  ++  C        A  + +++ E  ++PD H ++ 
Sbjct: 357 CGSLASAQMLF-NMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPD-HATFA 414

Query: 291 LL 292
            L
Sbjct: 415 SL 416



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 62  YCQTGDFESVIRIFREMEEI---DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           + + G   S +R+FR +      D  +F + L ACA L  LR G+ V  +        DV
Sbjct: 84  HSRRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + S+L+ LYA+ G +  A ++F++MP R+ +TW++M++GF   G+  +A++++  M E 
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G K D V  IGV+ AC+    +  G      + + + ++  +     +VD+  + GLL+ 
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           A  +      R+D S W  ++        +  A R+ + +    ++PD
Sbjct: 263 ACRVFGLMVHRNDVS-WSAMISGFAQNGQSDEALRLFRNMQASGIQPD 309


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 211/336 (62%), Gaps = 6/336 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMY--GKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            GK +H  VI  GL   V + ++++ MY       ++++  VF  M  K+ VS +++L G
Sbjct: 320 NGKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTG 379

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + QTG  E+ +++F  M     +ID ++F  VLR+C+ LA L+LG+++H   ++     +
Sbjct: 380 FSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESN 439

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + S+L+ +Y+KCG ++ A + F +    + ITWNS++  +AQ+G+G+ AL +F  M +
Sbjct: 440 DFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQHGQGDVALGLFFQMRD 499

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              K DH++F+  L+ACSH+GL+++GR    SM  +Y I P++EHY C VDL GRAG L+
Sbjct: 500 KKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLD 559

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+ LIE+     D+ +W+ LLGAC    +  +A +VA  ++EL+P+ H +YV+L N+Y 
Sbjct: 560 EAKALIESMPFDPDAMVWKTLLGACRACGDIELAAQVASHLLELEPEEHCTYVILSNMYG 619

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            + RW++   +  LM+   VKK+PG SWIE  ++++
Sbjct: 620 HLKRWDEKACMARLMRERKVKKVPGWSWIEVKNEVH 655



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 117/201 (58%), Gaps = 5/201 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           RL  G++VH+ ++ +G   +V   S+L+DMY KC  V ++  VF  + ++NSVS +AL+ 
Sbjct: 117 RLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIA 176

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+   GD ++   + R MEE    +D  +F  +L         +L  ++HC+ I+     
Sbjct: 177 GFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQF 236

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFL-QMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           D  + +A +  Y++CG ++ A ++F   +  R+L+TWNSM++ F  + R E A ++F DM
Sbjct: 237 DNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDM 296

Query: 176 TEGGTKPDHVSFIGVLSACSH 196
            + G +PD  ++  ++SACSH
Sbjct: 297 QQFGFEPDIYTYTTIISACSH 317



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 131/268 (48%), Gaps = 23/268 (8%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKC--GLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
            H + I LG   ++   ++++  Y +C  G +  +  +FD+M  +++V+ + ++ GY  +
Sbjct: 21  THCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNS 80

Query: 66  GDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G   S   +++ M+      D ++FG +L+  A    L +G++VH   ++    + V   
Sbjct: 81  GSLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAG 140

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SAL+D+YAKC  V  A  +F  +P RN ++WN++I+GF   G  + A  +   M E G +
Sbjct: 141 SALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVR 200

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH--------YNCMVDLLGRA 233
            D  +F  +L+      L+D   K F  +T +   K  I+H         N  +    + 
Sbjct: 201 LDDGTFSPLLT------LLD--EKKFYKLTMQLHCKI-IKHGVQFDNTVCNATITSYSQC 251

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGA 261
           G LE+AE + + A    D   W  +L A
Sbjct: 252 GSLEDAERVFDGAVGSRDLVTWNSMLAA 279



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 112/228 (49%), Gaps = 20/228 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H   +  G   N  V SSL+ MY KCG+++++ + F+K  K +S++ ++++  
Sbjct: 421 LQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFA 480

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  + +F +M +    +D  +F   L AC+ +  +  G+     Y+ +S   D
Sbjct: 481 YAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGR-----YLLKSMASD 535

Query: 118 VIIESAL------VDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALR 170
             I   +      VDL+ + G +D A  +   MP   + + W +++      G  E A +
Sbjct: 536 YGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGACRACGDIELAAQ 595

Query: 171 IFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
           +   + E   +P +H +++ + +   H+   D  +   A + +E ++K
Sbjct: 596 VASHLLE--LEPEEHCTYVILSNMYGHLKRWDE-KACMARLMRERKVK 640


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 206/346 (59%), Gaps = 15/346 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H+  I LG   ++++++S++ +Y KCG + E+ ++F+ M   N V+ +A++ G
Sbjct: 282 LDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAG 341

Query: 62  YCQTGDFES---------------VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVH 106
           + +  D                    +++R   + DLF+F  VL  C+ L AL  G+++H
Sbjct: 342 HAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIH 401

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
            Q I+     DV++ +ALV +Y KCG +D A + FL+MP R +I+W SMI+GFA++G  +
Sbjct: 402 GQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQ 461

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           +AL++F+DM   G KP+ V+F+GVLSACSH GL D    +F  M K+Y IKP ++H+ C+
Sbjct: 462 QALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACL 521

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286
           +D+  R G +EEA  ++   +   + ++W +L+  C +   + +    A+++++LKP   
Sbjct: 522 IDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDV 581

Query: 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            +YV L N++ + GRW D  K+R LMK   V K+   SWI    K+
Sbjct: 582 ETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKV 627



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 132/249 (53%), Gaps = 7/249 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           + + +H  ++  G   ++ V + LV++Y KCG+++ +H+VFD + ++N  + + LL GY 
Sbjct: 82  EARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYV 141

Query: 64  QTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q       +++F +M E   +    + GIVL AC+ L ++  GK+VH   I+     D  
Sbjct: 142 QNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTS 201

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I ++L   Y+K   ++FA + F  +  +++I+W S+IS    NG+   +L  F DM   G
Sbjct: 202 IGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDG 261

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            KP+  +   VLSAC  M  +D G + H  S+   Y     I+  N ++ L  + G L E
Sbjct: 262 MKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIK--NSIMYLYLKCGWLIE 319

Query: 239 AETLIENAD 247
           A+ L E  +
Sbjct: 320 AQKLFEGME 328



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 111/216 (51%), Gaps = 15/216 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VHA +I   +  +  + +SL   Y K   ++ + + F  + +K+ +S ++++   C 
Sbjct: 184 GKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCD 243

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     +  F +M     + + ++   VL AC  +  L LG ++H   I+      ++I
Sbjct: 244 NGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILI 303

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-----------NGRGEEAL 169
           +++++ LY KCG +  A ++F  M   NL+TWN+MI+G A+           +  G  AL
Sbjct: 304 KNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTAL 363

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +F  +   G KPD  +F  VLS CS++  +++G +
Sbjct: 364 AMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQ 399


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 201/335 (60%), Gaps = 4/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+ +H+  I  G    V V++SL+ +Y  CG  + +++VF+ M +++ V+ ++++ G
Sbjct: 134 VREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMING 193

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     + +FREM     E D F+   +L A A L AL LG+ VH   ++    K+
Sbjct: 194 FALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKN 253

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++L+DLYAKCG +  A ++F +M  RN ++W S+I G A NG GEEAL +F +M  
Sbjct: 254 SHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEG 313

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P  ++F+GVL ACSH G++D G ++F  M +E  I P+IEHY CMVDLL RAGL++
Sbjct: 314 QGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVK 373

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A   I+N   + ++ +W  LLGACT   +  + E     ++ L+P     YVLL N+Y 
Sbjct: 374 QAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYA 433

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +  RW+D   IR  M   GVKK PG S +E  +++
Sbjct: 434 SERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRV 468



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAG 95
           ++ VF  +   N  + + +++GY ++ +       +R+M     E D  ++  +L+A + 
Sbjct: 71  AYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISK 130

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
              +R G+ +H   IR      V ++++L+ +YA CG  + A+++F  M  R+L+ WNSM
Sbjct: 131 SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSM 190

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215
           I+GFA NGR  EAL +F +M+  G +PD  + + +LSA + +G ++ GR+    + K   
Sbjct: 191 INGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLK-VG 249

Query: 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +       N ++DL  + G + EA+ +      R+  S   +++G
Sbjct: 250 LSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVG 294


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/330 (36%), Positives = 202/330 (61%), Gaps = 4/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++H+ ++ LG   ++   ++LVDMY K G + ++ + FD + +++    ++L+ G
Sbjct: 338 LEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISG 397

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  D E  + ++R M+   +     +   VL+AC+ LA L LGK+VH   I+     +
Sbjct: 398 YVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLE 457

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V I SAL  +Y+KCG ++  + +F + P +++++WN+MISG + NG+G+EAL +F++M  
Sbjct: 458 VPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLA 517

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD V+F+ ++SACSH G ++RG  +F  M+ +  + PK++HY CMVDLL RAG L+
Sbjct: 518 EGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLK 577

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE+A+  H   LW +LL AC       +     +K+M L      +YV L  +Y 
Sbjct: 578 EAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYT 637

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           A+GR  D  ++   M+ +GV K  G SWIE
Sbjct: 638 ALGRMRDVERVWKHMRANGVSKEVGCSWIE 667



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 145/263 (55%), Gaps = 12/263 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++ HA V+ +   G++ V++SLV MY K GLV++  +VF  M ++N+ + S ++ GY  
Sbjct: 137 GRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYAT 196

Query: 65  TGDFESVIRIF----REMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            G  E  I++F    RE EE     + F  VL + A    + LG+++HC  I+      V
Sbjct: 197 RGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFV 256

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +ALV +Y+KC  ++ A ++F     RN ITW++M++G++QNG   EA+++F  M   
Sbjct: 257 ALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSA 316

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KP   + +GVL+ACS +  ++ G K   S   +   +  +     +VD+  +AG L +
Sbjct: 317 GIKPSEYTIVGVLNACSDICYLEEG-KQLHSFLLKLGFERHLFATTALVDMYAKAGCLAD 375

Query: 239 AETLIENADC--RHDSSLWEVLL 259
           A    +  DC    D +LW  L+
Sbjct: 376 AR---KGFDCLQERDVALWTSLI 395



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 116/210 (55%), Gaps = 14/210 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H   I  GL G V + ++LV MY KC  ++E+ ++FD    +NS++ SA++ GY Q
Sbjct: 240 GRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQ 299

Query: 65  TGDFESVIRIFREMEEIDLFSFGI---------VLRACAGLAALRLGKEVHCQYIRRSGC 115
            G+    +++F  M     FS GI         VL AC+ +  L  GK++H   ++    
Sbjct: 300 NGESLEAVKLFSRM-----FSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFE 354

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           + +   +ALVD+YAK GC+  A + F  +  R++  W S+ISG+ QN   EEAL ++  M
Sbjct: 355 RHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRM 414

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
              G  P+  +   VL ACS +  ++ G++
Sbjct: 415 KTAGIIPNDPTMASVLKACSSLATLELGKQ 444



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 146/268 (54%), Gaps = 13/268 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VH ++I  G    +   + LV+ Y KCG + ++H +F+ ++ K+ VS ++L+ G
Sbjct: 30  LVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITG 89

Query: 62  YCQTGDFES---VIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y Q G   S   V+++FREM   D+    ++   + +A + L +  +G++ H   ++ S 
Sbjct: 90  YSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSS 149

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D+ ++++LV +Y K G V+   ++F  MP RN  TW++M+SG+A  GR EEA+++F+ 
Sbjct: 150 FGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNL 209

Query: 175 M---TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
                E G+  D+V F  VLS+ +    +  GR+    +T +  +   +   N +V +  
Sbjct: 210 FLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQ-IHCITIKNGLLGFVALSNALVTMYS 267

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLL 259
           +   L EA  + +++  R +S  W  ++
Sbjct: 268 KCESLNEACKMFDSSGDR-NSITWSAMV 294


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 206/346 (59%), Gaps = 15/346 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H+  I LG   ++++++S++ +Y KCG + E+ ++F+ M   N V+ +A++ G
Sbjct: 276 LDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAG 335

Query: 62  YCQTGDFES---------------VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVH 106
           + +  D                    +++R   + DLF+F  VL  C+ L AL  G+++H
Sbjct: 336 HAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIH 395

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
            Q I+     DV++ +ALV +Y KCG +D A + FL+MP R +I+W SMI+GFA++G  +
Sbjct: 396 GQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQ 455

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           +AL++F+DM   G KP+ V+F+GVLSACSH GL D    +F  M K+Y IKP ++H+ C+
Sbjct: 456 QALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACL 515

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286
           +D+  R G +EEA  ++   +   + ++W +L+  C +   + +    A+++++LKP   
Sbjct: 516 IDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDV 575

Query: 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
            +YV L N++ + GRW D  K+R LMK   V K+   SWI    K+
Sbjct: 576 ETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKV 621



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 132/249 (53%), Gaps = 7/249 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           + + +H  ++  G   ++ V + LV++Y KCG+++ +H+VFD + ++N  + + LL GY 
Sbjct: 76  EARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYV 135

Query: 64  QTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q       +++F +M E   +    + GIVL AC+ L ++  GK+VH   I+     D  
Sbjct: 136 QNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTS 195

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I ++L   Y+K   ++FA + F  +  +++I+W S+IS    NG+   +L  F DM   G
Sbjct: 196 IGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDG 255

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            KP+  +   VLSAC  M  +D G + H  S+   Y     I+  N ++ L  + G L E
Sbjct: 256 MKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIK--NSIMYLYLKCGWLIE 313

Query: 239 AETLIENAD 247
           A+ L E  +
Sbjct: 314 AQKLFEGME 322



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 111/216 (51%), Gaps = 15/216 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VHA +I   +  +  + +SL   Y K   ++ + + F  + +K+ +S ++++   C 
Sbjct: 178 GKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCD 237

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     +  F +M     + + ++   VL AC  +  L LG ++H   I+      ++I
Sbjct: 238 NGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILI 297

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-----------NGRGEEAL 169
           +++++ LY KCG +  A ++F  M   NL+TWN+MI+G A+           +  G  AL
Sbjct: 298 KNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTAL 357

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +F  +   G KPD  +F  VLS CS++  +++G +
Sbjct: 358 AMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQ 393


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/333 (38%), Positives = 195/333 (58%), Gaps = 3/333 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK VH   I  G+   + V ++L++MY KCG ++E+  +FD + KK+++S + L+ G
Sbjct: 202 LKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGG 261

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y ++        +F EM      +  +   +L A A L++L  G+E+H   +RR   +D 
Sbjct: 262 YSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDN 321

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +ALVD+Y KCG +  A ++F  +  +NLI+W  MI+G+  +GRG +A+ +F+ M   
Sbjct: 322 FVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGS 381

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD  SF  +L ACSH GL D G + F +M  E+RI+PK++HY CMVDLL   G L+E
Sbjct: 382 GIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKE 441

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   IE      DSS+W  LL  C   RN  +AE+VA+ + EL+P+    YVLL N+Y  
Sbjct: 442 AYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAE 501

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
             RW    K++  +   G+++  G SWIE   K
Sbjct: 502 AERWEAVRKLKNKVGGRGLRENTGCSWIEVRGK 534



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 135/245 (55%), Gaps = 8/245 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  VH   +  GL     + ++L+DMY  C     ++++F  M +KN VS +A++  Y +
Sbjct: 104 GGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTR 163

Query: 65  TGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI- 119
            G F+ V  +F+EM  E I  D+F+    L A AG  +L+ GK VH  Y  R+G ++V+ 
Sbjct: 164 AGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVH-GYAIRNGIEEVLP 222

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+++Y KCG ++ A  IF  +  ++ I+WN++I G++++    EA  +F++M    
Sbjct: 223 VANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLL-Q 281

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +P+ V+   +L A + +  ++RGR+  A   +   ++      N +VD+  + G L  A
Sbjct: 282 LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVA-NALVDMYVKCGALLLA 340

Query: 240 ETLIE 244
             L +
Sbjct: 341 RRLFD 345



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 139/289 (48%), Gaps = 15/289 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  VH  ++  G      V ++L+  Y K   ++++  VFD+M +++ +S ++++ G   
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G ++  + +F  M    +E+D  +   V+ AC       +G  VH   +R     +  +
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+Y+ C      ++IF  M  +N+++W +MI+ + + G  ++   +F +M   G 
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRAGLL 236
           +PD  +    L A +    +  G+         Y I+  IE      N ++++  + G +
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKS-----VHGYAIRNGIEEVLPVANALMEMYVKCGYM 237

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKK-IMELKPD 284
           EEA  + ++   + D+  W  L+G  +    A+ A  +  + +++L+P+
Sbjct: 238 EEARFIFDHV-TKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRPN 285


>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
 gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
 gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 131/327 (40%), Positives = 199/327 (60%), Gaps = 5/327 (1%)

Query: 8   VHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           + A  I LG+ G +VV  +S++  + KCGL+D++  +FD+M ++N VS ++++ G+ + G
Sbjct: 178 IEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNG 237

Query: 67  DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
            F+  + +FREM+E D+    F+   +L ACA L A   G+ +H   +R     + I+ +
Sbjct: 238 RFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVT 297

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           AL+D+Y KCGC++    +F   P + L  WNSMI G A NG  E A+ +F ++   G +P
Sbjct: 298 ALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEP 357

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           D VSFIGVL+AC+H G + R  + F  M ++Y I+P I+HY  MV++LG AGLLEEAE L
Sbjct: 358 DSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEAL 417

Query: 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302
           I+N     D+ +W  LL AC    N  +A+R AK + +L PD    YVLL N Y + G +
Sbjct: 418 IKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLF 477

Query: 303 NDAFKIRTLMKYSGVKKMPGKSWIEAN 329
            +A + R LMK   ++K  G S IE +
Sbjct: 478 EEAVEQRLLMKERQMEKEVGCSSIEVD 504



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 139/301 (46%), Gaps = 47/301 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMY-GKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +++ K++HA +I  GL  + V  S ++         ++ ++ VF ++  KN    + +++
Sbjct: 38  MRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIR 97

Query: 61  GYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           G+ ++   E  I IF +M       +    ++  V +A   L   R G+++H   I+   
Sbjct: 98  GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGL 157

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM------------------- 155
             D  I + ++ +Y  CGC+  A +IFL M   +++ WNSM                   
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDE 217

Query: 156 ------------ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
                       ISGF +NGR ++AL +F +M E   KPD  + + +L+AC+++G  ++G
Sbjct: 218 MPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG 277

Query: 204 RKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           R        EY ++ + E        ++D+  + G +EE   + E A  +  S    ++L
Sbjct: 278 R-----WIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMIL 332

Query: 260 G 260
           G
Sbjct: 333 G 333



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 18/180 (10%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +QG+ +H  ++      N +V ++L+DMY KCG ++E   VF+   KK     ++++ G 
Sbjct: 275 EQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGL 334

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAAL-------RLGKEVHCQYIR 111
              G  E  + +F E+E    E D  SF  VL ACA    +       RL KE   +Y+ 
Sbjct: 335 ANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKE---KYMI 391

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALR 170
               K   +   +V++    G ++ A  +   MPV  + + W+S++S   + G  E A R
Sbjct: 392 EPSIKHYTL---MVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKR 448


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 129/330 (39%), Positives = 201/330 (60%), Gaps = 5/330 (1%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           EVHA+V+      +  V ++L+D Y K G V+E+ +VF  +  K+ V+ SA+L GY QTG
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473

Query: 67  DFESVIRIFREMEE----IDLFSFGIVLRACAGL-AALRLGKEVHCQYIRRSGCKDVIIE 121
           + E+ I++F E+ +     + F+F  +L  CA   A++  GK+ H   I+      + + 
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SAL+ +YAK G ++ A ++F +   ++L++WNSMISG+AQ+G+  +AL +F +M +   K
Sbjct: 534 SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 593

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D V+FIGV +AC+H GL++ G K+F  M ++ +I P  EH +CMVDL  RAG LE+A  
Sbjct: 594 MDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 653

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           +IEN      S++W  +L AC   +   +    A+KI+ +KP+   +YVLL N+Y   G 
Sbjct: 654 VIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGD 713

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           W +  K+R LM    VKK PG SWIE  +K
Sbjct: 714 WQERAKVRKLMNERNVKKEPGYSWIEVKNK 743



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 136/264 (51%), Gaps = 13/264 (4%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G +VH  V+  GL   + V +SL+++Y KCG V ++  +FDK   K+ V+ ++++ GY 
Sbjct: 212 RGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYA 271

Query: 64  QTG-DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
             G D E+ + +F  M      +   SF  V++ CA L  LR  +++HC  ++     D 
Sbjct: 272 ANGLDLEA-LGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQ 330

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            I +AL+  Y+KC  +  A ++F ++  V N+++W +MISGF QN   EEA+ +F +M  
Sbjct: 331 NIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKR 390

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+  ++  +L+A   + +I     H   +   Y     +     ++D   + G +E
Sbjct: 391 KGVRPNEFTYSVILTA---LPVISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVE 445

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           EA  +    D + D   W  +L  
Sbjct: 446 EAAKVFSGIDDK-DIVAWSAMLAG 468



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 4/197 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H + I  G   +V V +SLVD Y K     +  +VFD+M ++N V+ + L+ GY +
Sbjct: 112 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               + V+ +F  M+    + + F+F   L   A       G +VH   ++    K + +
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L++LY KCG V  A  +F +  V++++TWNSMISG+A NG   EAL +F  M     
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291

Query: 181 KPDHVSFIGVLSACSHM 197
           +    SF  V+  C+++
Sbjct: 292 RLSESSFASVIKLCANL 308



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 132/248 (53%), Gaps = 9/248 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQ 60
           L+  +++H  V+  G   +  + ++L+  Y KC  + ++ R+F ++    N VS +A++ 
Sbjct: 311 LRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMIS 370

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+ Q    E  + +F EM+   +    F++ ++L A   ++      EVH Q ++ +  +
Sbjct: 371 GFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYER 426

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + +AL+D Y K G V+ A ++F  +  ++++ W++M++G+AQ G  E A+++F ++T
Sbjct: 427 SSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELT 486

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +GG KP+  +F  +L+ C+         K F     + R+   +   + ++ +  + G +
Sbjct: 487 KGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNI 546

Query: 237 EEAETLIE 244
           E AE + +
Sbjct: 547 ESAEEVFK 554



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 5/214 (2%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAG 95
           +H +FDK   ++  S  +LL G+ + G  +   R+F  +     E+D   F  VL+  A 
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
           L     G+++HCQ I+     DV + ++LVD Y K        ++F +M  RN++TW ++
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215
           ISG+A+N   +E L +F  M   GT+P+  +F   L   +  G+  RG +    + K   
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN-G 224

Query: 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
           +   I   N +++L  + G + +A  L +  + +
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 9/151 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + QGK+ H   I   L  ++ V S+L+ MY K G ++ +  VF +  +K+ VS ++++ G
Sbjct: 511 MGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISG 570

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F+EM+    ++D  +F  V  AC     +  G++     +R   CK 
Sbjct: 571 YAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVR--DCKI 628

Query: 118 VIIE---SALVDLYAKCGCVDFAHQIFLQMP 145
              +   S +VDLY++ G ++ A ++   MP
Sbjct: 629 APTKEHNSCMVDLYSRAGQLEKAMKVIENMP 659


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 188/330 (56%), Gaps = 5/330 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++ +  V   G   +V V +S+VD YGKC  V ++  VFD M  +N+VS  +++  
Sbjct: 238 LSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVA 297

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E    ++    R  EE   F    VL  CAGL  L LG+ +H   +R     +
Sbjct: 298 YAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSN 357

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + SALVD+Y KCG ++ A Q+F +MP RNL+TWN+MI G+A  G    AL +FD M  
Sbjct: 358 IFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIM 417

Query: 178 GG-TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           G  T P++++ + VL+ACS  GL   G + F +M   + I+P+IEHY C+VDLL RAG+ 
Sbjct: 418 GQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGME 477

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E A  +I+    R   S+W  LLG C       +    A+K+ EL P    ++VLL N+ 
Sbjct: 478 ERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNML 537

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
            + GRW +A  +R  MK  G+KK PG+SWI
Sbjct: 538 ASAGRWAEATDVRKEMKNVGIKKDPGRSWI 567



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 144/302 (47%), Gaps = 8/302 (2%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G ++HA  +  G L  +  V  + +DMY K G +  + R+FD+M  +N V+ +A++    
Sbjct: 139 GTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAV 198

Query: 64  QTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             G     +  +  +       ++ S      ACAG+  L LG++ +    +    KDV 
Sbjct: 199 LDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVS 258

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +++VD Y KC CV  A  +F  M VRN ++W SM+  +AQNG  EEA  ++      G
Sbjct: 259 VSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAG 318

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +P       VL+ C+ +  +D GR   A   +   I   I   + +VD+ G+ G +E+A
Sbjct: 319 EEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSC-IDSNIFVASALVDMYGKCGGIEDA 377

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
           E +      R+  + W  ++G      +AH A  V  K M +  +   +Y+ L NV  A 
Sbjct: 378 EQVFFEMPQRNLVT-WNAMIGGYAHIGDAHNALSVFDK-MIMGQETAPNYITLVNVLTAC 435

Query: 300 GR 301
            R
Sbjct: 436 SR 437



 Score = 40.8 bits (94), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 2/153 (1%)

Query: 100 RLGKEVHCQYIRR-SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
           RLG+  H + +R  S      + + LV+LY+K      A       P   ++++ + ISG
Sbjct: 34  RLGRAAHARALRLLSPALPPFLCAHLVNLYSKLDLPGAAAASLAADPSPTVVSYTAFISG 93

Query: 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP 218
            AQ+ R  +AL  F  M   G +P+  +F     A +             ++   +   P
Sbjct: 94  AAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALALRFGYLP 153

Query: 219 KIEHYNC-MVDLLGRAGLLEEAETLIENADCRH 250
                +C  +D+  + G L  A  L +    R+
Sbjct: 154 DDAFVSCAALDMYFKTGCLALARRLFDEMPNRN 186


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 125/319 (39%), Positives = 191/319 (59%), Gaps = 5/319 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV   ++++D YGK G  + +  +F++M  ++ +S + ++  Y +   ++ VI +F ++ 
Sbjct: 172 NVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVI 231

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           +     D  +   V+ ACA L AL LGKEVH   + +    DV I S+L+D+YAKCG +D
Sbjct: 232 DKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSID 291

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A  +F ++  +NL  WN +I G A +G  EEALR+F +M     +P+ V+FI +L+AC+
Sbjct: 292 MALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACT 351

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H G I+ GR+ F SM ++Y I P++EHY CMVDLL +AGLLE+A  +I N     +S +W
Sbjct: 352 HAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIW 411

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LL  C   +N  +A    + +M L+P     Y LL N+Y    RWN+  KIRT MK  
Sbjct: 412 GALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDL 471

Query: 316 GV-KKMPGKSWIEANSKLN 333
           GV K+ PG SW+E N  ++
Sbjct: 472 GVEKRCPGSSWVEINKTVH 490



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 68/292 (23%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VH  V   G   +V V+++L++ Y   G V  S RVFD M +++  + + ++  + +
Sbjct: 95  GEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVR 154

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
            GD  S  R+F EM E                                   K+V   +A+
Sbjct: 155 DGDMASAGRLFDEMPE-----------------------------------KNVATWNAM 179

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D Y K G  + A  +F QMP R++I+W +M++ +++N R +E + +F D+ + G  PD 
Sbjct: 180 IDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDE 239

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKE-----------------------------YR 215
           V+   V+SAC+H+G +  G++    +  +                             Y+
Sbjct: 240 VTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYK 299

Query: 216 IKPK-IEHYNCMVDLLGRAGLLEEAETL---IENADCRHDSSLWEVLLGACT 263
           ++ K +  +NC++D L   G +EEA  +   +E    R ++  +  +L ACT
Sbjct: 300 LQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACT 351



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKEVH  ++  G   +V + SSL+DMY KCG +D +  VF K+  KN    + ++ G
Sbjct: 255 LALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDG 314

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  +R+F EME      +  +F  +L AC     +  G+      ++   C  
Sbjct: 315 LATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDY-CIA 373

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
             +E    +VDL +K G ++ A ++   M V  N   W ++++G
Sbjct: 374 PQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNG 417



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 50/94 (53%)

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           +SF  +++AC  L     G+ VH    +      V +++ L++ Y+  G V  + ++F  
Sbjct: 77  YSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDD 136

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           MP R++  W +MIS   ++G    A R+FD+M E
Sbjct: 137 MPERDVFAWTTMISAHVRDGDMASAGRLFDEMPE 170


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 127/336 (37%), Positives = 207/336 (61%), Gaps = 9/336 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQ 60
           L+ GK+VHA V+  G+  + VV+++L+  Y K G +     +F  M  +++++S ++++ 
Sbjct: 599 LELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMIS 658

Query: 61  GYCQTGDFES----VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY   G+ +     V  +    + +D  +F I+L ACA +AAL  G E+H   IR     
Sbjct: 659 GYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLES 718

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV++ESALVD+Y+KCG VD+A ++F  M  RN  +WNSMISG+A++G G +A+ IF++M 
Sbjct: 719 DVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEML 778

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                PDHV+F+ VLSACSH GL++RG ++F  M  ++ I P+IEHY+C++DLLGRAG +
Sbjct: 779 RSRESPDHVTFVSVLSACSHAGLVERGLEYF-EMMPDHGILPQIEHYSCVIDLLGRAGKI 837

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFR---NAHVAERVAKKIMELKPDCHLSYVLLD 293
           ++ +  I+      ++ +W  +L AC   +   N  +    ++ ++E++P   ++YVL  
Sbjct: 838 DKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLAS 897

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           N + A G W D  K RT M+ +  KK  G+SW+  N
Sbjct: 898 NFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLN 933



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 138/264 (52%), Gaps = 7/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L+ G+ VH  ++  GL    + V + LV+MY KCG ++ + ++F  M   + +S + ++ 
Sbjct: 395 LRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIIS 454

Query: 61  GYCQTGDFESVIRIFREMEE--IDLFSFGIV--LRACAGLAALRLGKEVHCQYIRRSGCK 116
              Q G+ E  +  +  M +  I   +F ++  L +CAGL  L  G++VHC  ++     
Sbjct: 455 ALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDL 514

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG-EEALRIFDDM 175
           D  + + LV +Y +CG +    ++F  M   + ++WN+M+   A +     E +++F++M
Sbjct: 515 DTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNM 574

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
             GG  P+ V+FI +L+A S + +++ G++  A++ K   ++  +   N ++    ++G 
Sbjct: 575 MRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVD-NALISCYAKSGD 633

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           +   E L  N   R D+  W  ++
Sbjct: 634 MGSCEHLFTNMSDRRDAISWNSMI 657



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 136/263 (51%), Gaps = 12/263 (4%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           +V   V+  G   ++ V S+LV  + + GL DE+  +F  + +KN+V+ + L+ G  +  
Sbjct: 296 QVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQD 355

Query: 67  DFESVIRIF---REMEEIDLFSFGIVLRACAGLA----ALRLGKEVHCQYIRRSGCKD-- 117
             E  ++IF   R   +++  ++ ++L A A  +     LR+G+ VH  ++ R+G  D  
Sbjct: 356 FSEEAVKIFVGTRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVH-GHMLRTGLTDLK 414

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + + LV++YAKCG ++ A +IF  M   + I+WN++IS   QNG  EEA+  +  M +
Sbjct: 415 IAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQ 474

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P + + I  LS+C+ + L+  G++      K + +       N +V + G  G + 
Sbjct: 475 SCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVK-WGLDLDTSVSNVLVKMYGECGAMS 533

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +   +  N+   HD   W  ++G
Sbjct: 534 DYWKVF-NSMAEHDEVSWNTMMG 555



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 11/187 (5%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + +H ++I  GL  ++ + + LV+ Y K   +  + +VFD+M ++N+VS + L+ GY   
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 66  GDFESVIRIFREM-EEIDL------FSFGIVLRACAGLAALRLG--KEVHCQYIRRSGCK 116
           G  E   R+FR M  E+        F+FG +LRAC      RLG   +VH    +     
Sbjct: 141 GIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYAS 200

Query: 117 DVIIESALVDLYAKC--GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
           +  + +AL+ +Y  C  G    A ++F   P+R+LITWN+++S +A+ G       +F D
Sbjct: 201 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKD 260

Query: 175 MTEGGTK 181
           M  G ++
Sbjct: 261 MQRGDSR 267



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 126/276 (45%), Gaps = 17/276 (6%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--GLVDESHRVFDKMLKKNSVSSSAL 58
           RL    +VH  V       N  V ++L+ MYG C  G    + RVFD    ++ ++ +AL
Sbjct: 182 RLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNAL 241

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL--------FSFGIVLRACAGLAALRLGKEVHCQYI 110
           +  Y + GD  S   +F++M+  D          +FG ++ A +  +      +    ++
Sbjct: 242 MSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWV 301

Query: 111 RRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
            +SGC  D+ + SALV  +A+ G  D A  IFL +  +N +T N +I G  +    EEA+
Sbjct: 302 LKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAV 361

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR----GRKHFASMTKEYRIKPKIEHYNC 225
           +IF   T      +  +++ +LSA +   + +     GR     M +      KI   N 
Sbjct: 362 KIFVG-TRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNG 420

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +V++  + G +E A  + +  +   D   W  ++ A
Sbjct: 421 LVNMYAKCGAIESASKIFQLMEAT-DRISWNTIISA 455



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           + +H + I+R    D+ + + LV+ YAK   +  A Q+F +MP RN ++W  ++SG+  +
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 163 GRGEEALRIFDDM---TEGGTKPDHVSFIGVLSACSHMG 198
           G  EEA R+F  M    + G +P   +F  +L AC   G
Sbjct: 141 GIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGG 179


>gi|115468046|ref|NP_001057622.1| Os06g0472300 [Oryza sativa Japonica Group]
 gi|113595662|dbj|BAF19536.1| Os06g0472300, partial [Oryza sativa Japonica Group]
          Length = 397

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 123/277 (44%), Positives = 179/277 (64%), Gaps = 6/277 (2%)

Query: 61  GYCQTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+ Q+GD    I +F  M+E    S       VLRAC GL  L +G++VH   ++    K
Sbjct: 1   GFAQSGDGVGAIELFMRMKEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVLKYD--K 58

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D+I+ +AL+D+Y KCG +  A  +F +MP R++I+W++MISG AQNGR  EAL++FD M 
Sbjct: 59  DLILHNALLDMYCKCGSLQDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMK 118

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P+H++ +GVL ACSH GL++ G  +F+SM K + I+P+ EH NCMVDLLGRAG L
Sbjct: 119 SEGPRPNHITMVGVLFACSHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKL 178

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           ++A   I   + + DS +W  LLGAC   +NA +A   AK+I+ L+PD   + +LL N Y
Sbjct: 179 DDAVKFIHEMNFQPDSVIWRTLLGACRMHKNADLAAYAAKEILRLEPDDQGARILLSNTY 238

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             + +W DA K   +M+  GVKK PG+SWIE   +++
Sbjct: 239 ADLRQWADAEKSWKMMRDRGVKKDPGRSWIELGKQVH 275



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VHA V+      ++++ ++L+DMY KCG + ++  +F +M +++ +S S ++ G
Sbjct: 43  LEVGRQVHAHVLKYD--KDLILHNALLDMYCKCGSLQDADALFGRMPQRDVISWSTMISG 100

Query: 62  YCQTGDFESVIRIFREME 79
             Q G     +++F  M+
Sbjct: 101 LAQNGRSIEALKVFDMMK 118


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 116/245 (47%), Positives = 167/245 (68%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +LRACA +AAL  GK+VH   I+     DV + + LVD+Y KCG ++ A ++F ++   +
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           + +WN+MISG AQ+G G+EA+ +F+ M + G KP+ ++F+ VLS CSH GL+D GR +F 
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
           SMT+++ I PK EHY+CMVDL GRAG L+EA   I       ++S+W  LLGAC    N 
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNI 183

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            +AER  ++++EL P+   +YVLL N+Y A GRW+DA K+R +MK   VKK PG SWIE 
Sbjct: 184 ELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEV 243

Query: 329 NSKLN 333
            +K++
Sbjct: 244 QNKVH 248



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 6/182 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QGK+VHA +I +G   +V V + LVDMYGKCG ++++  VF K+L+ +  S +A++ G
Sbjct: 14  LEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISG 73

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  +  + +F +M +  +     +F +VL  C+    +  G+       R  G   
Sbjct: 74  LAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISP 133

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
                S +VDL+ + GC+D A     QMPV  N   W S++     +G  E A R  + +
Sbjct: 134 KAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQL 193

Query: 176 TE 177
            E
Sbjct: 194 IE 195


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 202/338 (59%), Gaps = 12/338 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH  V+ +G    V V ++L+DMYGKC  + ++  +F+ + +K+  S ++++  
Sbjct: 227 LDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISV 286

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q GD +  +R+F +M       DL +   VL AC+ LAAL  G+E+H   I     KD
Sbjct: 287 HEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKD 346

Query: 118 --------VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
                   +++ +A++D+YAKCG ++ A +IF  M  +++ +WN MI G+  +G   EAL
Sbjct: 347 DENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEAL 406

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229
            +F  M E   KP+ V+ +GVLSAC+H G +  GR   A M   + + P IEHY C++D+
Sbjct: 407 GMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDM 466

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY 289
           LGRAG LE+A  +++    + +  +W  LLGAC    NA +AE  A+++++L+P+   SY
Sbjct: 467 LGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSY 526

Query: 290 VLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           VL+ NVY  +GR+ +  ++R  MK   VKK PG SWIE
Sbjct: 527 VLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIE 564



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 132/250 (52%), Gaps = 11/250 (4%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVF-DKMLKKNSVSSSALL 59
            L +GK++H+ +IT G   +    +SL++MY KCG + E+  VF D   ++N  + +A++
Sbjct: 26  NLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAII 85

Query: 60  QGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G+   G      + +++M       D ++F  V+R C  +  +   K++H   ++    
Sbjct: 86  SGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV---KKIHGCLLKMGLE 142

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV + SALV+ Y K G ++ A ++F ++ +R+++ WN+MI+G+A+ G  +EAL +F  M
Sbjct: 143 LDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRM 202

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G  P   +  G+LS  +  G +D G+  H   M   Y     +   N ++D+ G+  
Sbjct: 203 HVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVS--NALIDMYGKCK 260

Query: 235 LLEEAETLIE 244
            + +A  + E
Sbjct: 261 HIGDALIIFE 270



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 131/265 (49%), Gaps = 12/265 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++H  ++ +GL  +V V S+LV+ Y K G ++++ +VF ++  ++ V  +A++ GY + 
Sbjct: 130 KKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKI 189

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  +  + +FR M         F+   +L   A    L  GK VH   ++      V + 
Sbjct: 190 GCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVS 249

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +AL+D+Y KC  +  A  IF  +  +++ +WNS+IS   Q G  +  LR+FD M   G  
Sbjct: 250 NALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGIL 309

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMT-------KEYRIKPKIEHYNCMVDLLGRAG 234
           PD V+   VL ACSH+  +  GR+    M         E      +   N ++D+  + G
Sbjct: 310 PDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCG 369

Query: 235 LLEEAETLIENADCRHDSSLWEVLL 259
            +  A  + ++   + D + W +++
Sbjct: 370 SMNNALKIFDSMS-KKDVASWNIMI 393


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 202/369 (54%), Gaps = 39/369 (10%)

Query: 4   QGKEVHAKVITL----GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
            GK+VHA ++       L  ++ V ++L  +Y KCG VDE+ +VF++M  K+ VS +A+L
Sbjct: 309 HGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAIL 368

Query: 60  QGYCQTGDFESVIRIFREMEEIDLFSFGIVLR---------------------------- 91
            GY   G  +     F EM E +L ++ +++                             
Sbjct: 369 SGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDY 428

Query: 92  -------ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
                  ACA LAAL  G+++H Q +R      +   +AL+ +YAKCG V+ AH +FL M
Sbjct: 429 AFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTM 488

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P  + ++WN+MI+   Q+G G +AL +F+ M +    PD ++F+ VLS CSH GL++ G 
Sbjct: 489 PYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGH 548

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           ++F SM+  Y I P  +HY  M+DLL RAG   EA+ +IE         +WE LL  C  
Sbjct: 549 RYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRI 608

Query: 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324
             N  +  + A+++ EL P    +YVLL N+Y  VGRW+D  K+R LM+  GVKK PG S
Sbjct: 609 HGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCS 668

Query: 325 WIEANSKLN 333
           WIE  +K++
Sbjct: 669 WIEVENKVH 677



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 133/277 (48%), Gaps = 43/277 (15%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----E 80
           ++++  Y + G +D + +  D M +K  V+ +A++ GY   G F   + +FR+M     +
Sbjct: 229 TTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQ 288

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI-----IESALVDLYAKCGCVD 135
            D F++  VL ACA       GK+VH  YI R+  +  +     + +AL  LY KCG VD
Sbjct: 289 WDEFTYTSVLSACANAGFFLHGKQVHA-YILRTEPRPSLDFSLSVNNALATLYWKCGKVD 347

Query: 136 FAHQIFLQMPVRNLITWNS-------------------------------MISGFAQNGR 164
            A Q+F QMPV++L++WN+                               MISG AQNG 
Sbjct: 348 EARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGF 407

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
           GEE+L++F+ M   G +P   +F G + AC+ +  +  GR+  A + +       +   N
Sbjct: 408 GEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVR-LGFDSSLSAGN 466

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            ++ +  + G++E A  L        DS  W  ++ A
Sbjct: 467 ALITMYAKCGVVEAAHCLFLTMPYL-DSVSWNAMIAA 502



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/398 (19%), Positives = 159/398 (39%), Gaps = 89/398 (22%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--------------- 49
            + VHA +I  G      + + L+D+Y K   +  +H +FD++ +               
Sbjct: 34  ARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSS 93

Query: 50  ------------------KNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFG 87
                             +++V  +A++ GY    D    I +FR++       D F+F 
Sbjct: 94  AGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFT 153

Query: 88  IVLRACAGLAA-LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC---------VDFA 137
            VL A A +    +  +++HC  ++        + +AL+ ++ KC           +  A
Sbjct: 154 SVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAA 213

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG------------------- 178
            ++F +M  R+ ++W +MI+G+ +NG  + A +  D MTE                    
Sbjct: 214 RKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFL 273

Query: 179 ------------GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--- 223
                       G + D  ++  VLSAC++ G    G++  A + +    +P ++     
Sbjct: 274 EALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRT-EPRPSLDFSLSV 332

Query: 224 -NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
            N +  L  + G ++EA  +      + D   W  +L   + + NA   +  AK   E  
Sbjct: 333 NNALATLYWKCGKVDEARQVFNQMPVK-DLVSWNAIL---SGYVNAGRIDE-AKSFFEEM 387

Query: 283 PDCH-LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
           P+ + L++ ++ +     G   ++ K+   MK  G + 
Sbjct: 388 PERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEP 425



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 20/191 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++HA+++ LG   ++   ++L+ MY KCG+V+ +H +F  M   +SVS +A++  
Sbjct: 443 LMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAA 502

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRAC--AGLAALRLGKEVHCQYIRRSG- 114
             Q G     + +F  M  E+I  D  +F  VL  C  AGL      +E H  +   SG 
Sbjct: 503 LGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLV-----EEGHRYFKSMSGL 557

Query: 115 ---CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRG----E 166
              C      + ++DL  + G    A  +   MPV      W ++++G   +G      +
Sbjct: 558 YGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQ 617

Query: 167 EALRIFDDMTE 177
            A R+F+ M +
Sbjct: 618 AAERLFELMPQ 628


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 212/340 (62%), Gaps = 5/340 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+ +H+ VI  G    + V++SL+ +Y  CG V  +++VFDKM +K+ V+ ++++ G
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 63

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + + G  E  + ++ EM     + D F+   +L ACA + AL LGK VH   I+    ++
Sbjct: 64  FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 123

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           +   + L+DLYA+CG V+ A  +F +M  +N ++W S+I G A NG G+EA+ +F  M +
Sbjct: 124 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMES 183

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P  ++F+G+L ACSH G++  G ++F  M +EY+I+P+IEH+ CMVDLL RAG +
Sbjct: 184 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQV 243

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           ++A   I++   + +  +W  LLGACT   ++ +AE    +I++L+P+    YVLL N+Y
Sbjct: 244 KKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMY 303

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            +  RW+D  KIR  M   GVKK+PG S +E  ++++  L
Sbjct: 304 ASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFL 343



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 101/165 (61%), Gaps = 1/165 (0%)

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
           +A +RLG+ +H   IR      + ++++L+ LYA CG V  A+++F +MP ++L+ WNS+
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215
           I+GFA+NG+ EEAL ++ +M   G KPD  + + +LSAC+ +G +  G++    M K   
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK-VG 119

Query: 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +   +   N ++DL  R G +EEA+TL +    ++  S   +++G
Sbjct: 120 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG 164


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 205/334 (61%), Gaps = 7/334 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSALLQGYC 63
            K++H +VI  G   ++ ++++L+  Y KC  +D++ ++F  M   +N VS +A++ GY 
Sbjct: 313 AKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYV 372

Query: 64  QTGDFESVIRIFREME-----EIDLFSFGIVLRACAG-LAALRLGKEVHCQYIRRSGCKD 117
           Q G  +  + +F +M      E + F+F  VL ACA   A++  GK+ H   I+      
Sbjct: 373 QNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNA 432

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + SALV +YAK G ++ A+++F +   R+L++WNSMISG+AQ+G G+++L+IF++M  
Sbjct: 433 LCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRS 492

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              + D ++FIGV+SAC+H GL++ G+++F  M K+Y I P +EHY+CMVDL  RAG+LE
Sbjct: 493 KNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLE 552

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LI        +++W  LL AC    N  + E  A+K++ L+P    +YVLL N+Y 
Sbjct: 553 KAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYA 612

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
             G W +  K+R LM    VKK  G SWIE  +K
Sbjct: 613 TAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNK 646



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 138/249 (55%), Gaps = 6/249 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G +VH  VI  GL   + V +S+V+MY K  +V ++  VFD M  +N+VS ++++ G
Sbjct: 209 VEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAG 268

Query: 62  YCQTG-DFESVIRIFR-EMEEIDLFS--FGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G D E+    +R  +E + L    F  V++ CA +  +   K++HCQ I+     D
Sbjct: 269 FVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFD 328

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDM- 175
           + I++AL+  Y+KC  +D A ++F  M  V+N+++W ++ISG+ QNGR + A+ +F  M 
Sbjct: 329 LNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMR 388

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E G +P+  +F  VL+AC+         K F S + +      +   + +V +  + G 
Sbjct: 389 REEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGN 448

Query: 236 LEEAETLIE 244
           +E A  + +
Sbjct: 449 IESANEVFK 457



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 4/197 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH + I  G   +V V +SLVDMY K   V++  RVFD+M  KN VS ++LL GY Q
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  +++F +M+    + + F+F  VL   A   A+  G +VH   I+      + +
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +++V++Y+K   V  A  +F  M  RN ++WNSMI+GF  NG   EA  +F  M   G 
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 181 KPDHVSFIGVLSACSHM 197
           K     F  V+  C+++
Sbjct: 291 KLTQTIFATVIKLCANI 307



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 122/229 (53%), Gaps = 6/229 (2%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAG 95
           S ++FD+  ++    ++ LL  + +    +  + +F    R     D  S   VL+ C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
           L    +GK+VHCQ I+    +DV + ++LVD+Y K   V+   ++F +M V+N+++W S+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215
           ++G+ QNG  E+AL++F  M   G KP+  +F  VL   +  G +++G +   +M  +  
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           +   I   N MV++  ++ ++ +A+ + ++ + R+  S W  ++    T
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVS-WNSMIAGFVT 271



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QGK+ H+  I  G    + V S+LV MY K G ++ ++ VF + + ++ VS ++++ G
Sbjct: 414 VEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISG 473

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  ++IF EM     E+D  +F  V+ AC     +  G+      ++      
Sbjct: 474 YAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVP 533

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISG 158
            +   S +VDLY++ G ++ A  +  +MP     T W ++++ 
Sbjct: 534 TMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAA 576


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 125/327 (38%), Positives = 201/327 (61%), Gaps = 4/327 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA++    L  +  + ++LV++Y   G +++  + F    K + VS ++L+ G+ Q
Sbjct: 269 GKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQ 328

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G FE  + +F E+     + D F+  I+L ACA LAA++ G+++H   I+       II
Sbjct: 329 NGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTII 388

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           +++ + +YAKCG +D A+  F +    ++++W+ MIS  AQ+G  +EA+ +F+ M   G 
Sbjct: 389 QNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGI 448

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+H++F+GVL ACSH GL++ G ++F  M K++ I P ++H  C+VDLLGRAG L EAE
Sbjct: 449 APNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAE 508

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
           + I ++    D  +W  LL AC   +     +RVA++++EL+P+   SYVLL N+Y   G
Sbjct: 509 SFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAG 568

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIE 327
               A +IR LMK  GVKK PG SWIE
Sbjct: 569 IQMPATEIRNLMKDRGVKKEPGLSWIE 595



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 140/249 (56%), Gaps = 12/249 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +HA +   GL G V++ +SL+DMY KCG +D +  VF+   + +SVS ++L+ G
Sbjct: 57  LRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAG 116

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAG--LAALRLGKEVHCQYIRRSGC 115
           Y + G  + ++R+  +M      ++ ++ G  L+AC     +++  GK +H   ++    
Sbjct: 117 YVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLD 176

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-----NGRGEEALR 170
            DV++ +AL+D YAK G ++ A +IF  MP  N++ +N+MI+GF Q     +    EA+ 
Sbjct: 177 LDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMY 236

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F +M   G KP   +F  +L ACS +   + G++  A + K Y ++      N +V+L 
Sbjct: 237 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK-YNLQSDEFIGNALVELY 295

Query: 231 GRAGLLEEA 239
             +G +E+ 
Sbjct: 296 SLSGSIEDG 304



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 139/270 (51%), Gaps = 19/270 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H   + LGL  +VVV ++L+D Y K G ++++ ++F  M   N V  +A++ G+ Q
Sbjct: 163 GKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQ 222

Query: 65  ----TGDFES-VIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
                 +F +  + +F EM+   +    F+F  +L+AC+ + A   GK++H Q  + +  
Sbjct: 223 METMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQ 282

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D  I +ALV+LY+  G ++   + F   P  ++++W S+I G  QNG+ E  L +F ++
Sbjct: 283 SDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHEL 342

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLG 231
              G KPD  +   +LSAC+++  +  G +  A     Y IK  I ++    N  + +  
Sbjct: 343 LFSGRKPDEFTISIMLSACANLAAVKSGEQIHA-----YAIKTGIGNFTIIQNSQICMYA 397

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           + G ++ A    +      D   W V++ +
Sbjct: 398 KCGDIDSANMTFKETK-NPDIVSWSVMISS 426



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 4/152 (2%)

Query: 47  MLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLG 102
           M K+N VS ++L+ GY Q G +  V+ +F+E    DL    F+F   L  C     LRLG
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           + +H           V++ ++L+D+Y KCG +D+A  +F      + ++WNS+I+G+ + 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           G  +E LR+   M   G   +  +    L AC
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKAC 152



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP RN+++WNS+ISG+ Q G   E + +F +      + D  +F   LS C     +  G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           R   A +T      P +   N ++D+  + G ++ A  + E+AD   DS  W  L+  
Sbjct: 61  RLIHALITVSGLGGP-VLLTNSLIDMYCKCGRIDWARLVFESAD-ELDSVSWNSLIAG 116



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 22/171 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G+++HA  I  G+    ++++S + MY KCG +D ++  F +    + VS S ++  
Sbjct: 367 VKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISS 426

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACA-------GLAALRLGKEVH--CQ 108
             Q G  +  + +F  M+   +     +F  VL AC+       GL    + K+ H    
Sbjct: 427 NAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITP 486

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            ++ S C        +VDL  + G +  A    +      + + W S++S 
Sbjct: 487 NVKHSAC--------IVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSA 529


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/333 (41%), Positives = 196/333 (58%), Gaps = 7/333 (2%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALL 59
           L  G+++H +V+  G L  + +V  SL+ +Y       +S  +F ++   K  V  +AL+
Sbjct: 627 LNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALI 686

Query: 60  QGYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY Q    E  ++ ++ M   ++     +F  VLRACAG+++L+ G+E+H         
Sbjct: 687 SGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFN 746

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN-LITWNSMISGFAQNGRGEEALRIFDD 174
            D +  S+L+D+YAKCG V  + Q+F +MP RN +I+WNSMI G A+NG  EEAL IF  
Sbjct: 747 MDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQ 806

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M +    PD V+F+GVLSACSH G +  GRK F  M   Y+++P+++H  CMVD+LGR G
Sbjct: 807 MEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWG 866

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L EAE  I    C+ D  LW  LLGAC    +    +R A K+MELKP    SYVLL +
Sbjct: 867 FLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSS 926

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           +Y     W+ A  +R  MK  GVKK+PG SWIE
Sbjct: 927 IYAESENWSGAVSLRREMKLKGVKKLPGYSWIE 959



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 116/208 (55%), Gaps = 4/208 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VHA+    GL  NV V S+LV+MY KC  +D + +VF+ + ++N V  +A+L G
Sbjct: 325 LNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGG 384

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  + V+  F    R   + D F+F  +  ACA L  L  G ++H   I+     +
Sbjct: 385 FAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASN 444

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALVD+YAK G +  A + F  M + + ++WN++I G+ Q    +EA  +F  M  
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVS 504

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G  PD VS   ++SAC+++  + RG++
Sbjct: 505 NGVLPDEVSLASIVSACANVQELKRGQQ 532



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 125/238 (52%), Gaps = 6/238 (2%)

Query: 26  SLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL-- 83
           ++V+ Y   G + ++ ++F ++   N V+ + ++ G+ + G  E  I  F E+++  L  
Sbjct: 248 TVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKA 307

Query: 84  --FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
              S G VL A A L+ L  G  VH Q  +     +V + SALV++YAKC  +D A Q+F
Sbjct: 308 TRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVF 367

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
             +  RN++ WN+M+ GFAQNG  +E +  F  M   G +PD  +F  + SAC+ +  ++
Sbjct: 368 NSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLN 427

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            G +    M K  +    +   N +VD+  ++G L+EA    E     HD+  W  ++
Sbjct: 428 FGGQLHTVMIKN-KFASNLFVANALVDMYAKSGALKEARKQFELMKI-HDNVSWNAII 483



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 128/242 (52%), Gaps = 9/242 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K +H+K + +G+    ++ + +VD+Y KCG VD + + F ++ KK+  + +++L  
Sbjct: 57  LSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSM 116

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G F +V++ F  M   ++    F+F +VL AC+GL  +  G++VHC   +      
Sbjct: 117 YLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFR 176

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
              +  L+D+YAKC  +  A  +F      + ++W ++I+G+ ++G   EA+++FD M  
Sbjct: 177 SFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQR 236

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD ++ + V++A   +G +   RK F  +       P +  +N M+    + G  E
Sbjct: 237 VGHAPDQITLVTVVNAYVALGRLADARKLFTQIP-----NPNVVAWNVMISGHAKRGFAE 291

Query: 238 EA 239
           EA
Sbjct: 292 EA 293



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 112/208 (53%), Gaps = 5/208 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H  +I      N+ V ++LVDMY K G + E+ + F+ M   ++VS +A++ G
Sbjct: 426 LNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVG 485

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    +    +FR M       D  S   ++ ACA +  L+ G++ HC  ++      
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTS 545

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               S+L+D+Y KCG V  A  +F  MP RN+++ N++I+G+   G  EEA+ +F ++  
Sbjct: 546 TCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQM 604

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G KP  V+F G+L  C    +++ GR+
Sbjct: 605 VGLKPTEVTFAGLLDGCDGAFMLNLGRQ 632



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 7/225 (3%)

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
           L AL   K +H + ++       ++ + +VDLY KCG VDFA + F ++  +++  WNS+
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEY 214
           +S +  +G     ++ F  M     +P+  +F  VLSACS +  ++ GR+ H       +
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGF 173

Query: 215 RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
             +   +    ++D+  +   L +A  + + A    D+  W  L+           A +V
Sbjct: 174 GFRSFCQ--GGLIDMYAKCRYLRDARLVFDGA-LNLDTVSWTALIAGYVRDGFPMEAVKV 230

Query: 275 AKKIMEL--KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
             ++  +   PD  ++ V + N Y A+GR  DA K+ T +    V
Sbjct: 231 FDRMQRVGHAPD-QITLVTVVNAYVALGRLADARKLFTQIPNPNV 274


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 202/346 (58%), Gaps = 20/346 (5%)

Query: 2   LKQGKEVHAK-----VITL-----GLCGNVVVESSLVDMYGKCGLVDESHRVFD--KMLK 49
             QG E+HA      ++TL     G   +++V ++L+DMY KC     +  +FD   + +
Sbjct: 424 FSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEE 483

Query: 50  KNSVSSSALLQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGK 103
           +N V+ + ++ G+ Q GD    +++F EM         + ++   +L ACA LAA+R+GK
Sbjct: 484 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGK 543

Query: 104 EVHCQYIR--RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
           ++H   +R  R       + + L+D+Y+KCG VD A  +F  M  ++ I+W SM++G+  
Sbjct: 544 QIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGM 603

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
           +GRG EAL IFD M + G  PD ++F+ VL ACSH G++D+G  +F SM+ +Y + P+ E
Sbjct: 604 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 663

Query: 222 HYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281
           HY C +DLL R+G L++A   +++      + +W  LL AC    N  +AE    K++E+
Sbjct: 664 HYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEM 723

Query: 282 KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             +   SY L+ N+Y   GRW D  +IR LMK SG+KK PG SW++
Sbjct: 724 NAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 769



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 58/300 (19%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + Q KEVH   I  G   +V V ++L+D Y KCGL++ + +VF+ M  K+ VS +A++ G
Sbjct: 288 VPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 347

Query: 62  YCQTGDFESVIRIFREM--------------------------EEIDLFSFGI------- 88
           Y Q+G+FE+   +F+ M                          E ++LF   I       
Sbjct: 348 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 407

Query: 89  ------VLRACAGLAALRLGKEVHCQYIRRSGC------------KDVIIESALVDLYAK 130
                 VL ACA L A   G E+H   ++   C            +D+++ +AL+D+Y+K
Sbjct: 408 CVTIISVLSACASLGAFSQGTEIHAYSLKN--CLLTLDNDFGGEDEDLMVYNALIDMYSK 465

Query: 131 CGCVDFAHQIFLQMPV--RNLITWNSMISGFAQNGRGEEALRIFDDMTEG--GTKPDHVS 186
           C     A  IF  +P+  RN++TW  MI G AQ G   +AL++F +M     G  P+  +
Sbjct: 466 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 525

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-NCMVDLLGRAGLLEEAETLIEN 245
              +L AC+H+  I  G++  A + + +R +       NC++D+  + G ++ A  + ++
Sbjct: 526 ISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDS 585



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 154/328 (46%), Gaps = 58/328 (17%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQG 61
           G   H  +   G   NV + ++LV MY +CG ++E+  +FD++ ++   + +S ++++  
Sbjct: 181 GSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSA 240

Query: 62  YCQTGDFESVIRIFREM----------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           + ++ +  + + +F +M          E  D+ S   +L AC  L A+   KEVH   IR
Sbjct: 241 HVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIR 300

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE----- 166
                DV + +AL+D YAKCG ++ A ++F  M  +++++WN+M++G++Q+G  E     
Sbjct: 301 NGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFEL 360

Query: 167 ------------------------------EALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
                                         EAL +F  M   G+ P+ V+ I VLSAC+ 
Sbjct: 361 FKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACAS 420

Query: 197 MGLIDRGRKHFASMTKEYRIK---------PKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
           +G   +G +  A   K   +            +  YN ++D+  +    + A ++ ++  
Sbjct: 421 LGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIP 480

Query: 248 CRHDSSL-WEVLLGACTTFRNAHVAERV 274
               + + W V++G    + +++ A ++
Sbjct: 481 LEERNVVTWTVMIGGHAQYGDSNDALKL 508



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 7/185 (3%)

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + +V  Y  CG  D+A  +  ++     + WN +I    + GR + A+ +   M   GT+
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PDH +   VL AC  +     G   F  +      +  +   N +V +  R G LEEA  
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSA-FHGLICCNGFESNVFICNALVAMYSRCGSLEEASM 218

Query: 242 LIENADCR--HDSSLWEVLLGACTTFRNAHVAERVAKK---IMELKPDCHLSYVL-LDNV 295
           + +    R   D   W  ++ A     NA  A  +  K   I+  KP    S ++ + N+
Sbjct: 219 IFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNI 278

Query: 296 YRAVG 300
             A G
Sbjct: 279 LPACG 283


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 200/368 (54%), Gaps = 39/368 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H  V+  G   +  V ++L+DMYGKCG  DE  RVFD+    +  S +AL+ G  +
Sbjct: 175 GEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSR 234

Query: 65  TGDFESVIRIFRE--------------------------MEEIDLF----SFGI------ 88
                  +R+FRE                          +E +DLF    S GI      
Sbjct: 235 NAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVT 294

Query: 89  ---VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              VL A A +AAL  G+  HC  +R+    D+ + SALVD+YAKCG V  A  IF  MP
Sbjct: 295 IPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMP 354

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN+++WN+MI G+A +G  E A+R+F  M     KPD V+F  VL ACS  G  + GR 
Sbjct: 355 YRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRS 414

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +F  M  ++ I P++EHY CMV LLGRAG L++A  +I       D  +W  LLG+C   
Sbjct: 415 YFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVH 474

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  +AE  A+ + +L+P+   +YVLL N+Y +   W+   ++R +MK  G+KK  G SW
Sbjct: 475 GNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSW 534

Query: 326 IEANSKLN 333
           IE  +K++
Sbjct: 535 IEIKNKVH 542



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+  H   +  G   ++ V S+LVDMY KCG V ++  +F+ M  +N VS +A++ G
Sbjct: 308 LMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGG 367

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G+ E+ +R+FR M    E+ DL +F  VL AC+       G+    +   + G   
Sbjct: 368 YAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISP 427

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            +   A +V L  + G +D A+ I  QMP   +   W S++
Sbjct: 428 RMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLL 468



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 139/347 (40%), Gaps = 82/347 (23%)

Query: 16  GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFE------ 69
           G+  +  V SSL+  Y + G   ++  V D M  +  V  SAL+  +   GD E      
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 70  ---------------------------------SVIRIFREMEEIDLFSFGIVLRACAGL 96
                                            +++R+  E    D       L A   +
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 97  AALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQ---MPVR----- 147
             + +G+++H  Y+ ++GC+ D  + +AL+D+Y KCG  D   ++F +   M V      
Sbjct: 170 GDVAVGEQLH-GYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNAL 228

Query: 148 ---------------------------NLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
                                      N+++W S+++   QNGR  EA+ +F +M   G 
Sbjct: 229 VAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGI 288

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           +P+ V+   VL A +++  +  GR  H  S+ K +     I   + +VD+  + G + +A
Sbjct: 289 EPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFH--HDIYVGSALVDMYAKCGRVRDA 346

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
             + E    R+  S W  ++G       A  A R+ + +   + KPD
Sbjct: 347 RMIFEAMPYRNVVS-WNAMIGGYAMHGEAENAVRLFRSMQSSKEKPD 392


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 205/366 (56%), Gaps = 35/366 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH  +IT G   +    + L++MY KCG +  S  VF  M  K+SVS ++++  
Sbjct: 238 LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINV 297

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV-------------------------------- 89
           Y Q G     +++F  M+  D+ ++  +                                
Sbjct: 298 YIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATM 357

Query: 90  ---LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
              L  C+ LAA R GKE+H    +     DV + + L+++Y+KCG +  + Q+F  M  
Sbjct: 358 LSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKT 417

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           ++++TW ++IS     G G++A+R F +M   G  PDHV+F+ ++ ACSH GL++ G  +
Sbjct: 418 KDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNY 477

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F  M K+Y+I+P+IEHY C+VDLL R+ LL++AE  I +   + DSS+W  LL AC    
Sbjct: 478 FHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSG 537

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           +  +AERV+++I+EL PD    YVL+ N+Y A+G+W+    IR  +K  G+KK PG SW+
Sbjct: 538 DTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWM 597

Query: 327 EANSKL 332
           E  +K+
Sbjct: 598 EIQNKV 603



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 134/268 (50%), Gaps = 15/268 (5%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVS-SSALLQGY 62
           Q  ++H+ +ITLGL  +V+  + L+  Y        S  VF      N+V   +++++  
Sbjct: 31  QLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRAL 90

Query: 63  CQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G F   + ++ E + I    D ++F  V+ ACAGL    + K +H + +      D+
Sbjct: 91  THNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDL 150

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE- 177
            I +AL+D+Y +   +D A ++F +MP+R++++WNS+ISG+  NG   EAL I+    + 
Sbjct: 151 YIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKL 210

Query: 178 -----GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLG 231
                   KPD ++   +L AC H+G ++ G+  H   +T  Y         N ++++  
Sbjct: 211 FMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS--NILINMYA 268

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLL 259
           + G L  ++ +     C+ DS  W  ++
Sbjct: 269 KCGNLLASQEVFSGMKCK-DSVSWNSMI 295



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 162/334 (48%), Gaps = 50/334 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            +  K +H +V+ +G   ++ + ++L+DMY +   +D++ +VF++M  ++ VS ++L+ G
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 190

Query: 62  YCQTGDFESVIRIFRE-----MEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           Y   G +   + I+ +     ME +     DL +   +L+AC  L  L  GK VH  Y+ 
Sbjct: 191 YNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVH-DYMI 249

Query: 112 RSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
            SG + D    + L+++YAKCG +  + ++F  M  ++ ++WNSMI+ + QNG+  ++L+
Sbjct: 250 TSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLK 309

Query: 171 IFDDM--------------------------------TEGGTKPDHVSFIGVLSACSHMG 198
           +F++M                                TEG T PD  + + +L  CS + 
Sbjct: 310 VFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT-PDMATMLSILPVCSLLA 368

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
              +G++    + K   ++  +   N ++++  + G L  +  + +    + D   W  L
Sbjct: 369 AKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTAL 426

Query: 259 LGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290
           + AC  +     A R   ++    + PD H+++V
Sbjct: 427 ISACGMYGEGKKAVRAFGEMEAAGIVPD-HVAFV 459


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 124/327 (37%), Positives = 199/327 (60%), Gaps = 4/327 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H  V+ +G   ++ V ++L+D+Y KC  +D + ++F ++  KN VS + ++ GY  
Sbjct: 367 GEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYEN 426

Query: 65  TGDFESVIRIFRE----MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G+      +FRE       +   +F   L ACA LA++ LG +VH   I+ +  K V +
Sbjct: 427 LGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAV 486

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L+D+YAKCG + FA  +F +M   ++ +WN++ISG++ +G G +ALRI D M +   
Sbjct: 487 SNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDC 546

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ ++F+GVLS CS+ GLID+G++ F SM +++ I+P +EHY CMV LLGR+G L++A 
Sbjct: 547 KPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAM 606

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LIE         +W  +L A     N   A R A++I+++ P    +YVL+ N+Y    
Sbjct: 607 KLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAK 666

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           +W +   IR  MK  GVKK PG SWIE
Sbjct: 667 QWANVASIRKSMKEMGVKKEPGLSWIE 693



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 138/284 (48%), Gaps = 10/284 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            K VH +++      +  V   L+ +Y + G + ++ +VF++M K + V  S ++  +CQ
Sbjct: 266 AKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQ 325

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     + +F  M E     + F+   +L  CA      LG+++H   ++     D+ +
Sbjct: 326 NGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYV 385

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+YAKC  +D A ++F ++  +N ++WN++I G+   G G +A  +F +      
Sbjct: 386 SNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQV 445

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
               V+F   L AC+ +  +D G +      K    K K+   N ++D+  + G ++ A+
Sbjct: 446 SVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAK-KVAVSNSLIDMYAKCGDIKFAQ 504

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
           ++    +   D + W  L+   +T    H   R A +I+++  D
Sbjct: 505 SVFNEMETI-DVASWNALISGYST----HGLGRQALRILDIMKD 543



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +H+ ++ LG   N  V ++L++ Y  CG VD +  VF+ +L K+ V  + ++  Y + G 
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGY 227

Query: 68  FESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
           FE  +++   M         ++F   L+A  GL A    K VH Q ++     D  +   
Sbjct: 228 FEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG 287

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L+ LY + G +  A ++F +MP  +++ W+ MI+ F QNG   EA+ +F  M E    P+
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPN 347

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
             +   +L+ C+ +G      +    +  +      I   N ++D+  +   ++ A  L 
Sbjct: 348 EFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLF 406

Query: 244 ENADCRHDSSLWEVLLG 260
                +++ S   V++G
Sbjct: 407 AELSSKNEVSWNTVIVG 423



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 1/218 (0%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
             K +H  ++  G C ++   + L++ Y K G   ++  +FD+M ++N+VS   L QGY 
Sbjct: 67  SAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA 126

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
                    R+ RE  E++   F   L+    L    +   +H   ++     +  + +A
Sbjct: 127 CQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAA 186

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L++ Y+ CG VD A  +F  +  ++++ W  ++S + +NG  E++L++   M   G  P+
Sbjct: 187 LINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPN 246

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKI 220
           + +F   L A   +G  D  +     + K  Y + P++
Sbjct: 247 NYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRV 284


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 205/364 (56%), Gaps = 35/364 (9%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++ H++++  G   +V VE+SLV MY  CGL+  + R+F +M  ++ VS ++++ GYC+
Sbjct: 138 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCK 197

Query: 65  TGDFESVIRIFREMEEIDLFSFGI-----------------------------------V 89
            G  E    +F EM   +LF++ I                                   V
Sbjct: 198 CGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSV 257

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           + +CA L AL  G+  H   ++     ++I+ +ALVD+Y +CG ++ A ++F ++P ++ 
Sbjct: 258 ISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDS 317

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ++W+S+I G A +G   +A+  F  M   G  P  ++   VLSACSH GL+D+G + + +
Sbjct: 318 LSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYEN 377

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           M ++Y I+P++EHY C+VD+LGRAG L EAE  I     + ++ +   LLGAC  ++N  
Sbjct: 378 MKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTE 437

Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           VAERV   ++E+KP+    YVLL N+Y   G+W     +R +MK   VKK PG S IE +
Sbjct: 438 VAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEID 497

Query: 330 SKLN 333
            K+N
Sbjct: 498 GKIN 501



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 139/320 (43%), Gaps = 46/320 (14%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDM---------YGKCGLVDESHRVFDKMLKKNSVSSS 56
           K +H  ++   L  +V V S L+ +         +    L+  ++ +F ++   N    +
Sbjct: 29  KIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVFN 88

Query: 57  ALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
            L++ +    +       + +M +     D  +F  +++A   +  + +G++ H Q +R 
Sbjct: 89  VLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRF 148

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               DV +E++LV +YA CG +  A +IF QMP R++++W SM++G+ + G  E+A  +F
Sbjct: 149 GFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMF 208

Query: 173 DDMTE-------------------------------GGTKPDHVSFIGVLSACSHMGLID 201
           D+M                                  G   +    + V+S+C+H+G ++
Sbjct: 209 DEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALE 268

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            G +    + K +     I     +VD+  R G +E+A  + E    + DS  W  ++  
Sbjct: 269 FGERAHEYVVKSHMTVNLILG-TALVDMYWRCGEIEKAIRVFEELPDK-DSLSWSSIIKG 326

Query: 262 CTTFRNAHVAERVAKKIMEL 281
                +AH A     +++ L
Sbjct: 327 LAVHGHAHKAIHYFSQMVRL 346



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 97/197 (49%), Gaps = 8/197 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+  H  V+   +  N+++ ++LVDMY +CG ++++ RVF+++  K+S+S S++++G
Sbjct: 267 LEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKG 326

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     I  F +M  +       +   VL AC+    +  G E++    R  G + 
Sbjct: 327 LAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEP 386

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
            +     +VD+  + G +  A    L+MPV+ N     +++         E A R+ + +
Sbjct: 387 RLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNML 446

Query: 176 TEGGTKPDHVSFIGVLS 192
            E   KP+H  +  +LS
Sbjct: 447 IE--VKPEHSGYYVLLS 461


>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 479

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 202/336 (60%), Gaps = 15/336 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H  +   G   +  V +SL+ MYG    ++ +H++F++M + N VS ++++  +  
Sbjct: 129 GKQLHCSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSIIDCHVY 188

Query: 65  TGDFESVIRIFREMEE---------IDLFSFGIVLRACAGLAALRLGKEVHCQYIR---R 112
            G +   I +F +M +          D  +  + L AC  + +L  G++VH  ++R    
Sbjct: 189 CGKYNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVH-SFVRDGVN 247

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           S  + + + +ALVD+YAKCG V+ A++ F  M  +N+++WN MI GFA +G GEEAL +F
Sbjct: 248 SFGESISVFNALVDMYAKCGAVEEAYETFSNMKRKNVVSWNVMILGFASHGNGEEALALF 307

Query: 173 DDMT-EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
             M  E   +PD ++F+ VL ACSH GL+D GR++F  M ++Y IKP I+HY CMVDLLG
Sbjct: 308 TRMLHENVERPDEITFLCVLCACSHGGLVDEGRRYFEIMNRDYNIKPTIKHYGCMVDLLG 367

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVL 291
           RAGL  EA  LI++     ++ +W  LL AC  + N  + E+V K +MEL+PD    YVL
Sbjct: 368 RAGLFVEAYELIKSMPVECNAIIWRTLLAACRNYGNVELGEKVRKHLMELEPDHSSDYVL 427

Query: 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKM-PGKSWI 326
           L N+Y + G+WN+  K R  M+   V+K  PG S+I
Sbjct: 428 LANMYASTGQWNEMSKERRSMQERRVRKPEPGNSFI 463



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 129/268 (48%), Gaps = 11/268 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K++HA++   G   N+++   ++        ++ +  VFDK+ K +S   + +++G
Sbjct: 25  LNHLKQIHARIFLTGFNHNLILSGKIIMFCAVSQNMNYALNVFDKIPKPDSFLWNTMIRG 84

Query: 62  YCQ-TGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   T    + I  F+ M+     D F+F  +L+  A L  + LGK++HC   +      
Sbjct: 85  FGNSTTHSHNAIHFFKRMQLAHRPDNFTFSFILKIIARLRFVNLGKQLHCSLFKFGFENH 144

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++L+ +Y     ++ AHQ+F +M   NL++WNS+I      G+  EA+ +F  M +
Sbjct: 145 TYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSIIDCHVYCGKYNEAIDLFTKMVQ 204

Query: 178 GG-----TKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLG 231
                   +PDH + +  LSAC  +G +D GRK H             I  +N +VD+  
Sbjct: 205 QQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHSFVRDGVNSFGESISVFNALVDMYA 264

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLL 259
           + G +EEA     N   R +   W V++
Sbjct: 265 KCGAVEEAYETFSNMK-RKNVVSWNVMI 291


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 212/338 (62%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGL--CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           +K+G ++HA +IT G     N  V  +L+D+Y KCG +  + RVF  + +K+ +S +AL+
Sbjct: 190 IKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALI 249

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY Q G+    + +FR++ E    +D F    ++   A  A ++ GK++H   I+    
Sbjct: 250 LGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSG 309

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D+ + ++++D+Y KCG ++ A ++F +MP RN+I+W  MI+G+ ++G G+EA+R+FD+M
Sbjct: 310 VDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEM 369

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
               T+PD V+++ VL  CSH GL+++G+++F+ +   + IK ++EHY CMVDLLGRAG 
Sbjct: 370 QLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGR 429

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L+EA+ L+++     +  +W+ LL AC    +  + + V   ++ L  +  ++YV++ N+
Sbjct: 430 LKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNI 489

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           Y   G W +  +IR L+K   +KK  G+SW+E + +++
Sbjct: 490 YADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVH 527



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 139/251 (55%), Gaps = 5/251 (1%)

Query: 15  LGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRI 74
           +G   ++++ + L+ MYGKCG +  +  VFD+MLK+N VS +AL+ G+ Q G+    + +
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 75  FREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
           F +M     + + F+F   L+AC  L  L +G+++H   ++       ++ ++++D+Y+K
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
           CG ++ A  +F  MPVRNLI+WN+MI+G+   G  E+AL +F  M E G   D  +F   
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 191 LSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
           L ACS +G I  G + H   +T  +           ++DL  + G L  A  +  + + +
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240

Query: 250 HDSSLWEVLLG 260
           H  S   ++LG
Sbjct: 241 HVISWTALILG 251



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 139/264 (52%), Gaps = 8/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H   +  G     VV +S++DMY KCG ++E+  +F+ M  +N +S +A++ G
Sbjct: 89  LDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAG 148

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  E  + +F++M+E+    D F+F   L+AC+ L A++ G ++H   I       
Sbjct: 149 YTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYS 208

Query: 118 V--IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           V   +  AL+DLY KCG +  A ++F  +  +++I+W ++I G+AQ G   E++ +F  +
Sbjct: 209 VNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQL 268

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E   + D      ++   +   L+ +G++  A   K       I   N ++D+  + G+
Sbjct: 269 RESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIK-VPSGVDISVCNSILDMYLKCGM 327

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           + EAE L      R+  S W V++
Sbjct: 328 INEAERLFSEMPARNVIS-WTVMI 350


>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
 gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
           DEFECTIVE 247; Flags: Precursor
 gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
           thaliana gb|AC007109.6, and contains two DUF17 PF|01535
           domains [Arabidopsis thaliana]
 gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
          Length = 500

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/313 (40%), Positives = 191/313 (61%), Gaps = 5/313 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  ++++D Y + G VD + ++FDKM +++ +S +A++ G+ + G  E  +  FREM+
Sbjct: 139 NSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQ 198

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               + D  +    L AC  L AL  G  VH   + +    +V + ++L+DLY +CGCV+
Sbjct: 199 ISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVE 258

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           FA Q+F  M  R +++WNS+I GFA NG   E+L  F  M E G KPD V+F G L+ACS
Sbjct: 259 FARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACS 318

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H+GL++ G ++F  M  +YRI P+IEHY C+VDL  RAG LE+A  L+++   + +  + 
Sbjct: 319 HVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVI 378

Query: 256 EVLLGACTTFRNAHV-AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
             LL AC+   N  V AER+ K + +L    H +YV+L N+Y A G+W  A K+R  MK 
Sbjct: 379 GSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKG 438

Query: 315 SGVKKMPGKSWIE 327
            G+KK PG S IE
Sbjct: 439 LGLKKQPGFSSIE 451



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 6/173 (3%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K+ +  + ++D Y + G VD A ++F +MP R+LI+W +MI+GF + G  EEAL  F +M
Sbjct: 138 KNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREM 197

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G KPD+V+ I  L+AC+++G +  G   H   ++++++   ++   N ++DL  R G
Sbjct: 198 QISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVS--NSLIDLYCRCG 255

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDC 285
            +E A  +  N + R   S   V++G      NAH +    +K+ E   KPD 
Sbjct: 256 CVEFARQVFYNMEKRTVVSWNSVIVGFAAN-GNAHESLVYFRKMQEKGFKPDA 307



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 22/176 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VH  V++     NV V +SL+D+Y +CG V+ + +VF  M K+  VS ++++ G
Sbjct: 222 LSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVG 281

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACA--GLA--ALRLGKEVHCQY---- 109
           +   G+    +  FR+M+E     D  +F   L AC+  GL    LR  + + C Y    
Sbjct: 282 FAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISP 341

Query: 110 -IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNG 163
            I   GC        LVDLY++ G ++ A ++   MP++ N +   S+++  + +G
Sbjct: 342 RIEHYGC--------LVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHG 389



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 14/182 (7%)

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           Q      ++W S I+   +NGR  EA + F DMT  G +P+H++FI +LS C   G    
Sbjct: 30  QSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGC---GDFTS 86

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMV-----DLLGRAGLLEEAETLIENADCRHDSSLWEV 257
           G +    +   Y  K  ++  + MV      +  + G  ++A  + +  + + +S  W  
Sbjct: 87  GSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDK-NSVTWNT 145

Query: 258 LLGACTTFRNAHVAERVAKKIMELKPDCHL-SYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
           ++      R+  V    A K+ +  P+  L S+  + N +   G   +A      M+ SG
Sbjct: 146 MIDG--YMRSGQVDN--AAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISG 201

Query: 317 VK 318
           VK
Sbjct: 202 VK 203


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 204/370 (55%), Gaps = 38/370 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK--NSVSSSALL 59
           ++ GK+VHA ++   +  N  V ++L+  Y K G V+ + R+ D+ ++   N +S +ALL
Sbjct: 313 VRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372

Query: 60  QGYCQTGDFESVIRIF----------------------REMEEIDLF------------- 84
           +GY + GD ES   +F                      R  E IDLF             
Sbjct: 373 EGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSY 432

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +   VL  CA LA L  GK++HC+ IR    +   + +A++ +YA+ G   +A ++F Q+
Sbjct: 433 TLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQV 492

Query: 145 PVRN-LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
             R   ITW SMI   AQ+G+GEEA+ +F++M   G +PD ++++GVLSACSH G ++ G
Sbjct: 493 CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEG 552

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           ++++  +  E++I P++ HY CMVDLL RAGL  EA+  I       D+  W  LL AC 
Sbjct: 553 KRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACR 612

Query: 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGK 323
             +NA +AE  A+K++ + P+   +Y  + NVY A GRW+DA +I    K   V+K  G 
Sbjct: 613 VHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGF 672

Query: 324 SWIEANSKLN 333
           SW    SK++
Sbjct: 673 SWTHIRSKIH 682



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 141/326 (43%), Gaps = 70/326 (21%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDK------------------ 46
           G++VH+ V+ LGL   V V +S+++MYGKCG  + +  VF++                  
Sbjct: 183 GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTH 242

Query: 47  -------------MLKKNSVSSSALLQGYCQTGDFESVIRIFREM-----EEIDLFSFGI 88
                        M  ++ VS +A++ GY Q G     +++F  M        D F+   
Sbjct: 243 LGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 302

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ----- 143
           VL ACA L  +R+GK+VH   +R     +  + +AL+  YAK G V+ A +I  Q     
Sbjct: 303 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 362

Query: 144 ----------------------------MPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
                                       M  R+++ W +MI G+ QNGR +EA+ +F  M
Sbjct: 363 LNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 422

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G +P+  +   VLS C+ +  +D G++      +   ++      N ++ +  R+G 
Sbjct: 423 ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL-LERSSSVSNAIITMYARSGS 481

Query: 236 LEEAETLIENADCRHDSSLWEVLLGA 261
              A  + +    R ++  W  ++ A
Sbjct: 482 FPWARRMFDQVCWRKETITWTSMIVA 507



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 128/264 (48%), Gaps = 39/264 (14%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV   +SL+ M+ K G + ++  VF +M ++++VS + ++ G  + G F   I+   +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 80  EIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                   F+   VL +CA   A  +G++VH   ++      V + ++++++Y KCG  +
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 136 FAHQIFLQMPVRN-------------------------------LITWNSMISGFAQNGR 164
            A  +F +MPVR+                               +++WN+MI+G+ QNG 
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGL 276

Query: 165 GEEALRIFDDMT-EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEH 222
             +AL++F  M  E    PD  +   VLSAC+++G +  G++ H   +  E     ++  
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT- 335

Query: 223 YNCMVDLLGRAGLLEEAETLIENA 246
            N ++    ++G +E A  +++ +
Sbjct: 336 -NALISTYAKSGSVENARRIMDQS 358



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 2/157 (1%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           ++V   ++L+ ++AK G +  A  +F +MP R+ ++W  M+ G  + GR  EA++   DM
Sbjct: 96  RNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM 155

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           T  G  P   +   VLS+C+       GRK   S   +  +   +   N ++++ G+ G 
Sbjct: 156 TADGFTPTQFTLTNVLSSCAVTQAGAVGRK-VHSFVVKLGLGSCVPVANSVLNMYGKCGD 214

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
            E A T+ E    R  SS W  ++   T      +AE
Sbjct: 215 AETASTVFERMPVRSVSS-WNAMVSLNTHLGRMDLAE 250


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 200/336 (59%), Gaps = 12/336 (3%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +EVH  +I  G   +VV+ ++L+  Y   GL++ +H+VF++M  ++ VS ++++  YCQT
Sbjct: 146 REVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQT 205

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  E  ++++ +M       D F+   +L +CA + AL +G ++H     R   +++ + 
Sbjct: 206 GLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVG 265

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +AL+D+YAKCG +  A  IF  MP R++ TWNSMI G+  +GRG+EA+  F  M   G +
Sbjct: 266 NALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVR 325

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+ ++F+G+L  CSH GL+  G ++F  M+ E+ +KP I+HY CMVDL GRAG L+EA  
Sbjct: 326 PNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALE 385

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP----DCHLSYVLLDNVYR 297
           +I ++  +HD  LW  LLG+C   RN  + E   + +++L      DC    VLL  +Y 
Sbjct: 386 VIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDC----VLLSGIYA 441

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
                    ++R L++  G+K  PG SWIE   +++
Sbjct: 442 EAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVH 477



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H       L  N+ V ++L+DMY KCG +  +  +F+ M K++  + ++++ G
Sbjct: 243 LHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVG 302

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKE----VHCQYIRRS 113
           Y   G  +  I  F  M       +  +F  +L  C+    ++ G +    +  ++  + 
Sbjct: 303 YGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKP 362

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           G K       +VDL+ + G +  A ++    P + + + W +++
Sbjct: 363 GIKHY---GCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLL 403


>gi|6729044|gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
          Length = 770

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 206/335 (61%), Gaps = 4/335 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+ +G+++HA +   G+   + +ES+L+DMY KCG ++++  +F+   + + VS + +L 
Sbjct: 271 RIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILV 330

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLA----ALRLGKEVHCQYIRRSGCK 116
           G  Q G  E  I+ F  M +  +     V+ A  G++    +L LGK++H   I+R    
Sbjct: 331 GLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSG 390

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + + L+++Y+KCG +  +  +F +MP RN ++WNSMI+ FA++G G  AL+++++MT
Sbjct: 391 NTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMT 450

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               KP  V+F+ +L ACSH+GLID+GR+    M + + I+P+ EHY C++D+LGRAGLL
Sbjct: 451 TLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLL 510

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA++ I++   + D  +W+ LLGAC+   +  V E  A+++ +  PD   +++L+ N+Y
Sbjct: 511 KEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIY 570

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
            + G+W +  K    MK  GV K  G S IE   K
Sbjct: 571 SSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHK 605



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 127/243 (52%), Gaps = 4/243 (1%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-- 78
           +VV +SL+ +Y KCG + ++ ++FD+M  ++ +S + +  G+ +  + ES   + + M  
Sbjct: 90  LVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 79  -EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
               D  +  IVL  C       + K +H   I     K++ + + L+  Y KCGC    
Sbjct: 150 SGGFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSG 209

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
             +F  M  RN+IT  ++ISG  +N   E+ LR+F  M  G   P+ V+++  L+ACS  
Sbjct: 210 RGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGS 269

Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
             I  G++  A + K Y I+ ++   + ++D+  + G +E+A T+ E+     + S+  +
Sbjct: 270 QRIVEGQQIHALLWK-YGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVI 328

Query: 258 LLG 260
           L+G
Sbjct: 329 LVG 331



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 136/287 (47%), Gaps = 14/287 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K +HA  I  G    + V + L+  Y KCG       VFD M  +N ++ +A++ G  + 
Sbjct: 175 KMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIEN 234

Query: 66  GDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
              E  +R+F    R +   +  ++   L AC+G   +  G+++H    +     ++ IE
Sbjct: 235 ELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIE 294

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SAL+D+Y+KCG ++ A  IF      + ++   ++ G AQNG  EEA++ F  M + G +
Sbjct: 295 SALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVE 354

Query: 182 PDHVSFIGVLSACSHMGLIDRGR---KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            D      V+SA   +  ID      K   S+  + +        N ++++  + G L +
Sbjct: 355 ID----ANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTD 410

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKP 283
           ++T+      R+  S W  ++ A     +   A ++ +++  +E+KP
Sbjct: 411 SQTVFRRMPKRNYVS-WNSMIAAFARHGHGLAALKLYEEMTTLEVKP 456


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 130/341 (38%), Positives = 199/341 (58%), Gaps = 10/341 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VHA+++  GL  +  V++SL+ MY   GLVD +  +F  M ++N +S S ++ G
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMING 139

Query: 62  YCQTGDFESVIRIFREMEEIDL-------FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y + G ++  + +FREM+ + +       F+   VL AC  L AL  GK  H  YI + G
Sbjct: 140 YVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHA-YIDKCG 198

Query: 115 CK-DVIIESALVDLYAKCGCVDFAHQIFLQM-PVRNLITWNSMISGFAQNGRGEEALRIF 172
              DV++ +AL+D+YAKCG V+ A  +F  + P ++++ W++MISG A +G  EE + +F
Sbjct: 199 MPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLF 258

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
             M   G +P+ V+F+ V  AC H GL+  G+ +   MT++Y I P I+HY CMVDL GR
Sbjct: 259 SKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGR 318

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
           AG ++EA  ++++     D  +W  LL       +    E   KK++EL+P    +YVLL
Sbjct: 319 AGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLL 378

Query: 293 DNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            NVY   GRW D   +R LM+  G+KK+PG S IE    L+
Sbjct: 379 SNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLH 419



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 11/228 (4%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQ-TGDFESVIRIFREME----EIDLFSFGIVLRACA 94
           SH   +  L    +   A +Q   Q TG   S I IF  M     + D  +F  +L++ A
Sbjct: 18  SHPTLESFLWNTLIR--AHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFA 75

Query: 95  GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS 154
             + L LG+ VH Q +R     D  ++++L+ +Y+  G VD A  +F  MP RN+I+W+ 
Sbjct: 76  SPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSC 135

Query: 155 MISGFAQNGRGEEALRIFDDMTEGG---TKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
           MI+G+ + G+ +EAL +F +M   G    +P+  +  GVL+AC  +G ++ G+   A + 
Sbjct: 136 MINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYID 195

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           K   +   +     ++D+  + G +E+A  +  N     D   W  ++
Sbjct: 196 K-CGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMI 242


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 125/327 (38%), Positives = 201/327 (61%), Gaps = 4/327 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA++    L  +  + ++LV++Y   G +++  + F    K + VS ++L+ G+ Q
Sbjct: 348 GKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQ 407

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G FE  + +F E+     + D F+  I+L ACA LAA++ G+++H   I+       II
Sbjct: 408 NGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTII 467

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           +++ + +YAKCG +D A+  F +    ++++W+ MIS  AQ+G  +EA+ +F+ M   G 
Sbjct: 468 QNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGI 527

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+H++F+GVL ACSH GL++ G ++F  M K++ I P ++H  C+VDLLGRAG L EAE
Sbjct: 528 APNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAE 587

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
           + I ++    D  +W  LL AC   +     +RVA++++EL+P+   SYVLL N+Y   G
Sbjct: 588 SFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAG 647

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIE 327
               A +IR LMK  GVKK PG SWIE
Sbjct: 648 IQMPATEIRNLMKDRGVKKEPGLSWIE 674



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 140/249 (56%), Gaps = 12/249 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +HA +   GL G V++ +SL+DMY KCG +D +  VF+   + +SVS ++L+ G
Sbjct: 136 LRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAG 195

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAG--LAALRLGKEVHCQYIRRSGC 115
           Y + G  + ++R+  +M      ++ ++ G  L+AC     +++  GK +H   ++    
Sbjct: 196 YVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLD 255

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ-----NGRGEEALR 170
            DV++ +AL+D YAK G ++ A +IF  MP  N++ +N+MI+GF Q     +    EA+ 
Sbjct: 256 LDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMY 315

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           +F +M   G KP   +F  +L ACS +   + G++  A + K Y ++      N +V+L 
Sbjct: 316 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK-YNLQSDEFIGNALVELY 374

Query: 231 GRAGLLEEA 239
             +G +E+ 
Sbjct: 375 SLSGSIEDG 383



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 139/270 (51%), Gaps = 19/270 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK +H   + LGL  +VVV ++L+D Y K G ++++ ++F  M   N V  +A++ G+ Q
Sbjct: 242 GKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQ 301

Query: 65  ----TGDFES-VIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
                 +F +  + +F EM+   +    F+F  +L+AC+ + A   GK++H Q  + +  
Sbjct: 302 METMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQ 361

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D  I +ALV+LY+  G ++   + F   P  ++++W S+I G  QNG+ E  L +F ++
Sbjct: 362 SDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHEL 421

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLG 231
              G KPD  +   +LSAC+++  +  G +  A     Y IK  I ++    N  + +  
Sbjct: 422 LFSGRKPDEFTISIMLSACANLAAVKSGEQIHA-----YAIKTGIGNFTIIQNSQICMYA 476

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           + G ++ A    +      D   W V++ +
Sbjct: 477 KCGDIDSANMTFKETK-NPDIVSWSVMISS 505



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 4/197 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK  H  +I       + + ++L+ MY KCG  D + ++FD+M K+N VS ++L+ G
Sbjct: 35  LIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISG 94

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G +  V+ +F+E    DL    F+F   L  C     LRLG+ +H           
Sbjct: 95  YTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGP 154

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V++ ++L+D+Y KCG +D+A  +F      + ++WNS+I+G+ + G  +E LR+   M  
Sbjct: 155 VLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLR 214

Query: 178 GGTKPDHVSFIGVLSAC 194
            G   +  +    L AC
Sbjct: 215 HGLNLNSYALGSALKAC 231



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
           +D  ++  +++      +L  GK  H   I+      + + + L+ +Y KCG  D A ++
Sbjct: 17  LDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKL 76

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F +MP RN+++WNS+ISG+ Q G   E + +F +      + D  +F   LS C     +
Sbjct: 77  FDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDL 136

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             GR   A +T      P +   N ++D+  + G ++ A  + E+AD   DS  W  L+ 
Sbjct: 137 RLGRLIHALITVSGLGGP-VLLTNSLIDMYCKCGRIDWARLVFESAD-ELDSVSWNSLIA 194

Query: 261 A 261
            
Sbjct: 195 G 195



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 22/171 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G+++HA  I  G+    ++++S + MY KCG +D ++  F +    + VS S ++  
Sbjct: 446 VKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISS 505

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACA-------GLAALRLGKEVH--CQ 108
             Q G  +  + +F  M+      +  +F  VL AC+       GL    + K+ H    
Sbjct: 506 NAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITP 565

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            ++ S C        +VDL  + G +  A    +      + + W S++S 
Sbjct: 566 NVKHSAC--------IVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSA 608


>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 130/328 (39%), Positives = 203/328 (61%), Gaps = 4/328 (1%)

Query: 11  KVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFES 70
           KV   G+  ++V  ++++    KCGLVDES R+FDKM  +N+VS ++++ GY + G F  
Sbjct: 178 KVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFD 237

Query: 71  VIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVD 126
            + +F++M+    E   F+   +L ACA L A+R G+ +H   +++    + I+ +A++D
Sbjct: 238 ALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIID 297

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           +Y+KCG +D A Q+F   P R L  WNSMI G A NG+  EAL++F  +     +PD VS
Sbjct: 298 MYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVS 357

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
           FI VL+AC H G++D+ + +F  M  +Y+IKP I+H++CMVD+LGRAGLLEEAE LI + 
Sbjct: 358 FIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGRAGLLEEAEELIRSM 417

Query: 247 DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306
               D+ +W  LL +C  + N  +A+R A  ++EL P    S+VL+ N Y A   + +A 
Sbjct: 418 HVDPDAIIWGSLLWSCCKYGNIKMAKRAANHLIELNPSESSSFVLVANAYAAANNFEEAL 477

Query: 307 KIRTLMKYSGVKKMPGKSWIEANSKLNH 334
           K R  +K + + K PG S IE   +++ 
Sbjct: 478 KERLTLKENHIGKEPGCSCIEVGGEVHE 505



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 135/297 (45%), Gaps = 40/297 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM-YGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +K  K++H+++I  GL  +    S ++       G ++ ++ VF ++   N  + + +++
Sbjct: 35  MKDLKKIHSQLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQIQNPNIFAWNTIIR 94

Query: 61  GYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           G+ ++   ++ I ++ +M      +    ++  V +A A L     G ++H + I+    
Sbjct: 95  GFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLE 154

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN---------------------- 153
            D  I + ++ +Y  CG    A ++F +    +++ WN                      
Sbjct: 155 NDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKM 214

Query: 154 ---------SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
                    SMISG+ +NGR  +AL +F  M     +P   + + +L+AC+ +G I +G 
Sbjct: 215 SLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGE 274

Query: 205 -KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             H   + K++ + P +     ++D+  + G +++A  + ++A  R  S    ++LG
Sbjct: 275 WIHDYMVKKKFELNPIV--VTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILG 329



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 87/185 (47%), Gaps = 12/185 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QG+ +H  ++      N +V ++++DMY KCG +D++ +VF    ++     ++++ G
Sbjct: 270 IRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILG 329

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHC----QYIRRS 113
               G     +++F  ++  DL     SF  VL AC     +   K+       +Y  + 
Sbjct: 330 LAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKP 389

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIF 172
           G K     S +VD+  + G ++ A ++   M V  + I W S++    + G  + A R  
Sbjct: 390 GIKHF---SCMVDVLGRAGLLEEAEELIRSMHVDPDAIIWGSLLWSCCKYGNIKMAKRAA 446

Query: 173 DDMTE 177
           + + E
Sbjct: 447 NHLIE 451


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 202/346 (58%), Gaps = 20/346 (5%)

Query: 2   LKQGKEVHAK-----VITL-----GLCGNVVVESSLVDMYGKCGLVDESHRVFD--KMLK 49
             QG E+HA      ++TL     G   +++V ++L+DMY KC     +  +FD   + +
Sbjct: 417 FSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEE 476

Query: 50  KNSVSSSALLQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGK 103
           +N V+ + ++ G+ Q GD    +++F EM         + ++   +L ACA LAA+R+GK
Sbjct: 477 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGK 536

Query: 104 EVHCQYIR--RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
           ++H   +R  R       + + L+D+Y+KCG VD A  +F  M  ++ I+W SM++G+  
Sbjct: 537 QIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGM 596

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
           +GRG EAL IFD M + G  PD ++F+ VL ACSH G++D+G  +F SM+ +Y + P+ E
Sbjct: 597 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 656

Query: 222 HYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281
           HY C +DLL R+G L++A   +++      + +W  LL AC    N  +AE    K++E+
Sbjct: 657 HYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEM 716

Query: 282 KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             +   SY L+ N+Y   GRW D  +IR LMK SG+KK PG SW++
Sbjct: 717 NAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 762



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 58/300 (19%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + Q KEVH   I  G   +V V ++L+D Y KCGL++ + +VF+ M  K+ VS +A++ G
Sbjct: 281 VPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 340

Query: 62  YCQTGDFESVIRIFREM--------------------------EEIDLFSFGI------- 88
           Y Q+G+FE+   +F+ M                          E ++LF   I       
Sbjct: 341 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 400

Query: 89  ------VLRACAGLAALRLGKEVHCQYIRRSGC------------KDVIIESALVDLYAK 130
                 VL ACA L A   G E+H   ++   C            +D+++ +AL+D+Y+K
Sbjct: 401 CVTIISVLSACASLGAFSQGTEIHAYSLKN--CLLTLDNDFGGEDEDLMVYNALIDMYSK 458

Query: 131 CGCVDFAHQIFLQMPV--RNLITWNSMISGFAQNGRGEEALRIFDDMTEG--GTKPDHVS 186
           C     A  IF  +P+  RN++TW  MI G AQ G   +AL++F +M     G  P+  +
Sbjct: 459 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 518

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-NCMVDLLGRAGLLEEAETLIEN 245
              +L AC+H+  I  G++  A + + +R +       NC++D+  + G ++ A  + ++
Sbjct: 519 ISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDS 578



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 154/328 (46%), Gaps = 58/328 (17%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQG 61
           G   H  +   G   NV + ++LV MY +CG ++E+  +FD++ ++   + +S ++++  
Sbjct: 174 GSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSA 233

Query: 62  YCQTGDFESVIRIFREM----------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           + ++ +  + + +F +M          E  D+ S   +L AC  L A+   KEVH   IR
Sbjct: 234 HVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIR 293

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE----- 166
                DV + +AL+D YAKCG ++ A ++F  M  +++++WN+M++G++Q+G  E     
Sbjct: 294 NGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFEL 353

Query: 167 ------------------------------EALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
                                         EAL +F  M   G+ P+ V+ I VLSAC+ 
Sbjct: 354 FKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACAS 413

Query: 197 MGLIDRGRKHFASMTKEYRIK---------PKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
           +G   +G +  A   K   +            +  YN ++D+  +    + A ++ ++  
Sbjct: 414 LGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIP 473

Query: 248 CRHDSSL-WEVLLGACTTFRNAHVAERV 274
               + + W V++G    + +++ A ++
Sbjct: 474 LEERNVVTWTVMIGGHAQYGDSNDALKL 501



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 7/185 (3%)

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + +V  Y  CG  D+A  +  ++     + WN +I    + GR + A+ +   M   GT+
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PDH +   VL AC  +     G   F  +      +  +   N +V +  R G LEEA  
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSA-FHGLICCNGFESNVFICNALVAMYSRCGSLEEASM 211

Query: 242 LIENADCR--HDSSLWEVLLGACTTFRNAHVAERVAKK---IMELKPDCHLSYVL-LDNV 295
           + +    R   D   W  ++ A     NA  A  +  K   I+  KP    S ++ + N+
Sbjct: 212 IFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNI 271

Query: 296 YRAVG 300
             A G
Sbjct: 272 LPACG 276


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 133/338 (39%), Positives = 198/338 (58%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H  V+  G   +V V + L+D YGKC  V  S  +F  + K N VS  +++  
Sbjct: 225 LRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVS 284

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  + E    +F    +E  E   F    VL ACAGL+ L +GK VH   ++     +
Sbjct: 285 YVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGN 344

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + SALVD+Y KCG ++ A + F +MP RNL+TWN+MI G+A  G+ + A+ +FD+MT 
Sbjct: 345 IFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTC 404

Query: 178 GGTK--PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           G  +  P++V+F+ VLSACS  G ++ G + F SM   Y I+P  EHY C+VDLLGRAG+
Sbjct: 405 GSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGM 464

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           +E+A   I+    R   S+W  LLGA   F  + + +  A  + EL P    ++VLL N+
Sbjct: 465 VEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNM 524

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + A GRW +A  +R  MK  G+KK  G SWI A + ++
Sbjct: 525 FAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVH 562



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 137/261 (52%), Gaps = 8/261 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VHA  +  G   +V V  S  DMY K GL +E+ ++FD+M ++N  + +A L     
Sbjct: 127 GKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVL 186

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVI 119
            G ++  +  F E      E +L +F   L ACAG + LRLG+++H  ++ +SG + DV 
Sbjct: 187 EGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLH-GFVLQSGFEADVS 245

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + + L+D Y KC  V  +  IF  +   N ++W SMI  + QN   E+A  +F    + G
Sbjct: 246 VANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEG 305

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +P       VLSAC+ + +++ G K   ++  +  +   I   + +VD+ G+ G +E+A
Sbjct: 306 IEPTDFMVSSVLSACAGLSVLEVG-KSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDA 364

Query: 240 ETLIENADCRHDSSLWEVLLG 260
           E   +    R+  + W  ++G
Sbjct: 365 ERAFDEMPERNLVT-WNAMIG 384



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 6/233 (2%)

Query: 5   GKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+  HA++I TL       + + LV+MY K    + +  +      ++ V+ +AL+ G  
Sbjct: 25  GRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSV 84

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G F S +  F  M     + + F+F    +A   L +  +GK+VH   ++     DV 
Sbjct: 85  QNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVF 144

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +  +  D+Y+K G  + A ++F +MP RN+ TWN+ +S     GR ++AL  F +    G
Sbjct: 145 VGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEG 204

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            +P+ ++F   L+AC+    +  GR+       +   +  +   N ++D  G+
Sbjct: 205 WEPNLITFCAFLNACAGASYLRLGRQ-LHGFVLQSGFEADVSVANGLIDFYGK 256


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 204/370 (55%), Gaps = 38/370 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK--NSVSSSALL 59
           ++ GK+VHA ++   +  N  V ++L+  Y K G V+ + R+ D+ ++   N +S +ALL
Sbjct: 313 VRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372

Query: 60  QGYCQTGDFESVIRIF----------------------REMEEIDLF------------- 84
           +GY + GD ES   +F                      R  E IDLF             
Sbjct: 373 EGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSY 432

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +   VL  CA LA L  GK++HC+ IR    +   + +A++ +YA+ G   +A ++F Q+
Sbjct: 433 TLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQV 492

Query: 145 PVRN-LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
             R   ITW SMI   AQ+G+GEEA+ +F++M   G +PD ++++GVLSACSH G ++ G
Sbjct: 493 CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEG 552

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           ++++  +  E++I P++ HY CMVDLL RAGL  EA+  I       D+  W  LL AC 
Sbjct: 553 KRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACR 612

Query: 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGK 323
             +NA +AE  A+K++ + P+   +Y  + NVY A GRW+DA +I    K   V+K  G 
Sbjct: 613 VHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGF 672

Query: 324 SWIEANSKLN 333
           SW    SK++
Sbjct: 673 SWTHIRSKIH 682



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 141/326 (43%), Gaps = 70/326 (21%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKC------------------------------ 34
           G++VH+ V+ LGL   V V +S+++MYGKC                              
Sbjct: 183 GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTH 242

Query: 35  -GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-----EEIDLFSFGI 88
            G +D +  +F+ M  ++ VS +A++ GY Q G     +++F  M        D F+   
Sbjct: 243 LGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 302

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ----- 143
           VL ACA L  +R+GK+VH   +R     +  + +AL+  YAK G V+ A +I  Q     
Sbjct: 303 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 362

Query: 144 ----------------------------MPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
                                       M  R+++ W +MI G+ QNGR +EA+ +F  M
Sbjct: 363 LNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 422

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G +P+  +   VLS C+ +  +D G++      +   ++      N ++ +  R+G 
Sbjct: 423 ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL-LEQSSSVSNAIITMYARSGS 481

Query: 236 LEEAETLIENADCRHDSSLWEVLLGA 261
              A  + +    R ++  W  ++ A
Sbjct: 482 FPWARRMFDQVCWRKETITWTSMIVA 507



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 128/264 (48%), Gaps = 39/264 (14%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV   +SL+ M+ K G + ++  VF +M ++++VS + ++ G  + G F   I+   +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 80  EIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                   F+   VL +CA   A  +G++VH   ++      V + ++++++Y KCG  +
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 136 FAHQIFLQMPVRN-------------------------------LITWNSMISGFAQNGR 164
            A  +F +MPVR+                               +++WN+MI+G+ QNG 
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGL 276

Query: 165 GEEALRIFDDMT-EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEH 222
             +AL++F  M  E    PD  +   VLSAC+++G +  G++ H   +  E     ++  
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT- 335

Query: 223 YNCMVDLLGRAGLLEEAETLIENA 246
            N ++    ++G +E A  +++ +
Sbjct: 336 -NALISTYAKSGSVENARRIMDQS 358



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           ++V   ++L+ ++AK G +  A  +F +MP R+ ++W  M+ G  + GR  EA++   DM
Sbjct: 96  RNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM 155

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           T  G  P   +   VLS+C+       GRK   S   +  +   +   N ++++ G+ G 
Sbjct: 156 TADGFTPTQFTLTNVLSSCAVTQAGAVGRK-VHSFVVKLGLGSCVPVANSVLNMYGKCGD 214

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAER-VAKKIMELKPD 284
            E A T+ E    R  SS W  ++       N H+    +A+ + E  PD
Sbjct: 215 SETATTVFERMPVRSVSS-WNAMVSL-----NTHLGRMDLAESLFESMPD 258


>gi|42563517|ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g05340
 gi|332640702|gb|AEE74223.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 658

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 206/335 (61%), Gaps = 4/335 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+ +G+++HA +   G+   + +ES+L+DMY KCG ++++  +F+   + + VS + +L 
Sbjct: 271 RIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILV 330

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLA----ALRLGKEVHCQYIRRSGCK 116
           G  Q G  E  I+ F  M +  +     V+ A  G++    +L LGK++H   I+R    
Sbjct: 331 GLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSG 390

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  + + L+++Y+KCG +  +  +F +MP RN ++WNSMI+ FA++G G  AL+++++MT
Sbjct: 391 NTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMT 450

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               KP  V+F+ +L ACSH+GLID+GR+    M + + I+P+ EHY C++D+LGRAGLL
Sbjct: 451 TLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLL 510

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA++ I++   + D  +W+ LLGAC+   +  V E  A+++ +  PD   +++L+ N+Y
Sbjct: 511 KEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIY 570

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
            + G+W +  K    MK  GV K  G S IE   K
Sbjct: 571 SSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHK 605



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 127/243 (52%), Gaps = 4/243 (1%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-- 78
           +VV +SL+ +Y KCG + ++ ++FD+M  ++ +S + +  G+ +  + ES   + + M  
Sbjct: 90  LVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 79  -EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
               D  +  IVL  C       + K +H   I     K++ + + L+  Y KCGC    
Sbjct: 150 SGGFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSG 209

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
             +F  M  RN+IT  ++ISG  +N   E+ LR+F  M  G   P+ V+++  L+ACS  
Sbjct: 210 RGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGS 269

Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
             I  G++  A + K Y I+ ++   + ++D+  + G +E+A T+ E+     + S+  +
Sbjct: 270 QRIVEGQQIHALLWK-YGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVI 328

Query: 258 LLG 260
           L+G
Sbjct: 329 LVG 331



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 136/287 (47%), Gaps = 14/287 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K +HA  I  G    + V + L+  Y KCG       VFD M  +N ++ +A++ G  + 
Sbjct: 175 KMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIEN 234

Query: 66  GDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
              E  +R+F    R +   +  ++   L AC+G   +  G+++H    +     ++ IE
Sbjct: 235 ELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIE 294

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SAL+D+Y+KCG ++ A  IF      + ++   ++ G AQNG  EEA++ F  M + G +
Sbjct: 295 SALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVE 354

Query: 182 PDHVSFIGVLSACSHMGLIDRGR---KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            D      V+SA   +  ID      K   S+  + +        N ++++  + G L +
Sbjct: 355 ID----ANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTD 410

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKP 283
           ++T+      R+  S W  ++ A     +   A ++ +++  +E+KP
Sbjct: 411 SQTVFRRMPKRNYVS-WNSMIAAFARHGHGLAALKLYEEMTTLEVKP 456


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 197/361 (54%), Gaps = 36/361 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  +HA+ + +G   NV V SSL+DMY KC    ++  +FD + +KN V  ++L  G
Sbjct: 397 LRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASG 456

Query: 62  YCQTGDFESVIRIFREMEEIDLFS-----------------------------------F 86
           Y   G     + +F++M   +L S                                   F
Sbjct: 457 YSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITF 516

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA L +L  GK  H + I+    + + I +AL D+YAK G +  + ++F QMP 
Sbjct: 517 SSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPE 576

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN +TW +MI G A+NG  EE++ + +DM   G  P+  +F+ +L ACSH GL+++   +
Sbjct: 577 RNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHY 636

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F  M + + I PK +HY CMVD+L RAG L EAE L+     + +++ W  LL AC T++
Sbjct: 637 FEKM-QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYK 695

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  + ER AK++ EL  D    YVLL N+Y + GRW DA +IR LMK + +KK  G SW+
Sbjct: 696 NEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWV 755

Query: 327 E 327
           +
Sbjct: 756 Q 756



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 131/275 (47%), Gaps = 37/275 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++L+D+Y + G +D + RV D M ++N VS   L+  + Q G+    ++++ +M 
Sbjct: 314 DVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQML 373

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 ++  F  VL ACA L  LR G  +H + ++     +V + S+L+D+Y KC    
Sbjct: 374 ADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCR 433

Query: 136 FAHQIFLQMPVRNLITWNSM-------------------------------ISGFAQNGR 164
            A  IF  +P +N++ WNS+                               ISG+AQN +
Sbjct: 434 DAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQ 493

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
             +ALR F+ M   G  P  ++F  VL AC+++  +  G+   A   K   ++  I    
Sbjct: 494 FVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIK-LGMEESIFIGT 552

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            + D+  ++G L+ ++ +      R+D + W  ++
Sbjct: 553 ALSDMYAKSGDLQSSKRMFYQMPERNDVT-WTAMI 586



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 36/214 (16%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NVV  +++VD   K G V E+  ++++    +    +A + G+ +     + + +FR+M 
Sbjct: 181 NVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMV 240

Query: 80  EIDLFSFGI----VLRACAG-----LAALRLGKEVHCQYIRRS----------------- 113
              +   GI    +++AC G     LA   +G  +   +   S                 
Sbjct: 241 SCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMGDA 300

Query: 114 ----------GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
                       KDV+  +AL+D+Y++ G +D A ++   MP RN ++W ++I+   Q G
Sbjct: 301 AAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRG 360

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
              EA++++  M   G +P+   F  VLSAC+ +
Sbjct: 361 NAAEAVKLYSQMLADGCRPNISCFSSVLSACATL 394



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 96/262 (36%), Gaps = 39/262 (14%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSA--- 57
           RL     +HA  +  G+  +  V S L+  Y       E  R F   +   + S      
Sbjct: 97  RLPLALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDF 156

Query: 58  LLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           ++  + + GD  S   +F  M E                                   ++
Sbjct: 157 MVHEHVKAGDIASARGLFDGMPE-----------------------------------RN 181

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V+  + +VD   K G V  A +++ Q P  ++  + + ISGF +N     AL +F  M  
Sbjct: 182 VVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMVS 241

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+ ++F+ ++ AC   G          S  K    +  IE  N ++ L  R G   
Sbjct: 242 CGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMGDAA 301

Query: 238 EAETLIENADCRHDSSLWEVLL 259
            A  + +  D + D   W  LL
Sbjct: 302 AARKVFDEMDVK-DVVSWTALL 322


>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
          Length = 416

 Score =  247 bits (631), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 130/329 (39%), Positives = 205/329 (62%), Gaps = 8/329 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H  V+  GL  +V V ++LV MYG    ++ +  +F++M K   V+ + ++     
Sbjct: 70  GKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVY 129

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI- 119
            G ++  I +F  M +  L     +F + L ACA L  L +G+ VH   I  +G  +V+ 
Sbjct: 130 CGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVH-SCIDHTGLGNVVS 188

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+D+YAKCG V+ A++IF +M  RN+++WN+MI G A +G G+EAL +F  M E  
Sbjct: 189 VSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEK 248

Query: 180 -TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
              P+ V+F+GVL ACSH G+++ GR++F  M ++Y I+P I+HY  MVD+LGRAGL+EE
Sbjct: 249 LATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEE 308

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A  LI++     +S +W  LL AC    N  +AE+V ++++EL+PD    YVLL N+Y +
Sbjct: 309 AYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQQLLELEPDHSSDYVLLANMYAS 368

Query: 299 VGRWNDAFKIRTLMKYSGVKK-MPGKSWI 326
            G+WN   ++R  M   GV+K  PG S+I
Sbjct: 369 AGQWNKVVRVRKSMHIRGVQKPKPGNSYI 397



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 115/228 (50%), Gaps = 5/228 (2%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRA 92
           +D + RVF K+   +    + +++G  +T   E     ++ M    E +D F++  +++ 
Sbjct: 1   MDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKV 60

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
           C  L +  LGK++HC  ++    + V + + LV +Y     ++ A  +F +MP   L+ W
Sbjct: 61  CGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAW 120

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           N++I      GR +EA+ +F  M + G KPD  +F+  LSAC+ +G +D GR+   S   
Sbjct: 121 NTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRR-VHSCID 179

Query: 213 EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              +   +   N ++D+  + G++E A  +      R+  S   ++LG
Sbjct: 180 HTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILG 227


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 123/312 (39%), Positives = 189/312 (60%), Gaps = 4/312 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV   + +V    KCG+++E+  +F++M +KN +S SA++ GY + G ++  + +F  M+
Sbjct: 226 NVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQ 285

Query: 80  EIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
             ++    F    VL ACA L AL  G+ +H      S   D ++ +ALVD+YAKCG +D
Sbjct: 286 REEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLD 345

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A  +F +M  + + TWN+MI G   +GR E+A+ +F  M +   +P+ ++ +GVLSAC+
Sbjct: 346 MAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACA 405

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H G++D G + F SM + Y I+P +EHY C+VDLLGRAGLL EAE ++ +      +++W
Sbjct: 406 HSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVW 465

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGAC    +  + ERV K ++EL+P     Y LL N+Y   GRW+D   +R LMK  
Sbjct: 466 GALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKER 525

Query: 316 GVKKMPGKSWIE 327
           GVK   G S I+
Sbjct: 526 GVKTSTGISMID 537



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 35/200 (17%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VHA VI  GL G+V + S+ + MYG  G V+ + R+  +    + +  +A++ GY +
Sbjct: 149 GVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLK 208

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
            G+ E+   +F  ME+ ++ S+ +                                   +
Sbjct: 209 CGEVEAAKELFWSMEDKNVGSWNV-----------------------------------M 233

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           V   AKCG ++ A ++F +M  +N I+W++MI G+ + G  +EAL +F+ M     +P  
Sbjct: 234 VSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRK 293

Query: 185 VSFIGVLSACSHMGLIDRGR 204
                VL+AC+++G +D+GR
Sbjct: 294 FVLSSVLAACANLGALDQGR 313



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 12/179 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+ +HA V       + V+ ++LVDMY KCG +D +  VF+KM KK   + +A++ G
Sbjct: 309 LDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICG 368

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACA--GLA--ALRLGKEVHCQYIRRS 113
               G  E  I +F +M++      GI    VL ACA  G+    LR+   +   Y    
Sbjct: 369 LGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEP 428

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRI 171
           G +       +VDL  + G +  A ++   MP+  +   W +++    ++G  E   R+
Sbjct: 429 GMEHY---GCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERV 484



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 119/269 (44%), Gaps = 18/269 (6%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGL--VDESHRVFDKMLKKNSVSSSALLQGYC 63
           K+VHA  +  G   +  V  +LV  Y       ++ + +VF+ +   N    + +++G  
Sbjct: 47  KQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCL 106

Query: 64  QTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q  +    I  + +M       + F++  + +AC    A   G +VH   I++    DV 
Sbjct: 107 QNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVH 166

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I SA + +Y   G V+ A ++  +    ++I +N+MI G+ + G  E A  +F  M +  
Sbjct: 167 IRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKN 226

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
               +V    ++S  +  G+I+  R+ F  M ++  I      ++ M+D   + G  +EA
Sbjct: 227 VGSWNV----MVSGMAKCGMIEEARELFNEMKEKNEIS-----WSAMIDGYIKGGYYKEA 277

Query: 240 ---ETLIENADCRHDSSLWEVLLGACTTF 265
                +++  + R    +   +L AC   
Sbjct: 278 LEVFNVMQREEIRPRKFVLSSVLAACANL 306


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 204/370 (55%), Gaps = 38/370 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK--NSVSSSALL 59
           ++ GK+VHA ++   +  N  V ++L+  Y K G V+ + R+ D+ ++   N +S +ALL
Sbjct: 207 VRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 266

Query: 60  QGYCQTGDFESVIRIF----------------------REMEEIDLF------------- 84
           +GY + GD ES   +F                      R  E IDLF             
Sbjct: 267 EGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSY 326

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +   VL  CA LA L  GK++HC+ IR    +   + +A++ +YA+ G   +A ++F Q+
Sbjct: 327 TLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQV 386

Query: 145 PVRN-LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
             R   ITW SMI   AQ+G+GEEA+ +F++M   G +PD ++++GVLSACSH G ++ G
Sbjct: 387 CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEG 446

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           ++++  +  E++I P++ HY CMVDLL RAGL  EA+  I       D+  W  LL AC 
Sbjct: 447 KRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACR 506

Query: 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGK 323
             +NA +AE  A+K++ + P+   +Y  + NVY A GRW+DA +I    K   V+K  G 
Sbjct: 507 VHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGF 566

Query: 324 SWIEANSKLN 333
           SW    SK++
Sbjct: 567 SWTHIRSKIH 576



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 141/326 (43%), Gaps = 70/326 (21%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKC------------------------------ 34
           G++VH+ V+ LGL   V V +S+++MYGKC                              
Sbjct: 77  GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTH 136

Query: 35  -GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-----EEIDLFSFGI 88
            G +D +  +F+ M  ++ VS +A++ GY Q G     +++F  M        D F+   
Sbjct: 137 LGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 196

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ----- 143
           VL ACA L  +R+GK+VH   +R     +  + +AL+  YAK G V+ A +I  Q     
Sbjct: 197 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 256

Query: 144 ----------------------------MPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
                                       M  R+++ W +MI G+ QNGR +EA+ +F  M
Sbjct: 257 LNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 316

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G +P+  +   VLS C+ +  +D G++      +   ++      N ++ +  R+G 
Sbjct: 317 ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL-LEQSSSVSNAIITMYARSGS 375

Query: 236 LEEAETLIENADCRHDSSLWEVLLGA 261
              A  + +    R ++  W  ++ A
Sbjct: 376 FPWARRMFDQVCWRKETITWTSMIVA 401



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 122/254 (48%), Gaps = 39/254 (15%)

Query: 30  MYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FS 85
           M+ K G + ++  VF +M ++++VS + ++ G  + G F   I+   +M         F+
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              VL +CA   A  +G++VH   ++      V + ++++++Y KCG  + A  +F +MP
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 146 VRN-------------------------------LITWNSMISGFAQNGRGEEALRIFDD 174
           VR+                               +++WN+MI+G+ QNG   +AL++F  
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 175 MT-EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGR 232
           M  E    PD  +   VLSAC+++G +  G++ H   +  E     ++   N ++    +
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT--NALISTYAK 238

Query: 233 AGLLEEAETLIENA 246
           +G +E A  +++ +
Sbjct: 239 SGSVENARRIMDQS 252


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 205/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+ VH  ++ +GL  NV V ++L+ MY KC   D + +VFD++  K  VS +A++ G
Sbjct: 444 LDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILG 503

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  +R+F  M+    + D F+   ++ A A ++     + +H   IR    +D
Sbjct: 504 CTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQD 563

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+D+YAKCG V  A  +F     R++ITWN+MI G+  +G G+ A+ +F++M  
Sbjct: 564 VYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKS 623

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+  +F+ VLSACSH GL+D G+++F+SM ++Y ++P +EHY  MVDLLGRAG L 
Sbjct: 624 SGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLH 683

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA + I+        S++  +LGAC   +N  +AE  A++I EL+P+  + +VLL N+Y 
Sbjct: 684 EAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYA 743

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
               W D  ++RT M+  G++K PG S ++  ++++
Sbjct: 744 NASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIH 779



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 163/321 (50%), Gaps = 13/321 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ VHA++   GL    +  ++L +MY KC    ++ RVFD+M  ++ V+ +AL+ G
Sbjct: 241 LATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAG 300

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y + G  E+ + +   M+E      D  +   VL ACA   AL   +EVH   +R    +
Sbjct: 301 YARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDE 360

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V + +A++D+Y KCG VD A ++F  M  RN ++WN+MI G+A+NG   EAL +F  M 
Sbjct: 361 QVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMV 420

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G     VS +  L AC  +G +D GR+    + +   ++  +   N ++ +  +    
Sbjct: 421 GEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVR-IGLESNVNVMNALITMYCKCKRT 479

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCHLSYVLLDN 294
           + A  + +    +   S W  ++  CT   ++  A R+  ++    +KPD   S+ L+ +
Sbjct: 480 DLAAQVFDELGYKTRVS-WNAMILGCTQNGSSEDAVRLFSRMQLENVKPD---SFTLV-S 534

Query: 295 VYRAVGRWNDAFKIRTLMKYS 315
           +  A+   +D  + R +  YS
Sbjct: 535 IIPALADISDPLQARWIHGYS 555



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 6/145 (4%)

Query: 57  ALLQGYCQTGDFESVIRIFREMEEID-----LFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           A L+      D    +  F  M         L +F  +L+ CA  A L  G+ VH Q   
Sbjct: 194 ARLRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAA 253

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
           R    + +  +AL ++YAKC     A ++F +MP R+ + WN++++G+A+NG  E A+ +
Sbjct: 254 RGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGM 313

Query: 172 FDDMT-EGGTKPDHVSFIGVLSACS 195
              M  E G +PD V+ + VL AC+
Sbjct: 314 VVRMQEEDGERPDAVTLVSVLPACA 338


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 126/341 (36%), Positives = 202/341 (59%), Gaps = 8/341 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G+  H +V+  G   ++ V ++L+  Y  CG    +  VFD+   ++ V+ + ++  
Sbjct: 127 VKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINA 186

Query: 62  YCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           +   G  E    +  EM ++D       +   ++ ACA L  L  GK +H         +
Sbjct: 187 HLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFE 246

Query: 117 ---DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D+++E+ALVD+YAKCG +D A Q+F +M VRN+ TWN++I G A +G GE+A+ +FD
Sbjct: 247 INCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFD 306

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M      PD V+FI +L ACSH GL+D G   F +M  +++I+P++EHY C+VDLL RA
Sbjct: 307 QMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRA 366

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
             +++A   IEN   + +S LW  LLGAC +  +  +AE++ ++++EL+PD    YV+L 
Sbjct: 367 RKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLS 426

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNH 334
           N+Y  V +W+ A K+R  MK  G++K PG SWIE N  ++ 
Sbjct: 427 NLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQ 467



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 137/270 (50%), Gaps = 12/270 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYG--KCGLVDESHRVFDKMLKKNSVSSSALL 59
           + + K+ HA ++   L  N +  S L+        G ++ + ++F +M   +    + ++
Sbjct: 24  ISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMI 83

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           +GY ++ +    + ++  M E    +D +++  VL ACA L A++LG+  HC+ ++    
Sbjct: 84  RGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFG 143

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D+ + +AL+  Y  CG    A  +F +  VR+++TWN MI+     G  E+A  + D+M
Sbjct: 144 SDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEM 203

Query: 176 TE-GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE---YRIKPKIEHYNCMVDLLG 231
           T+    +PD V+ + ++ AC+ +G ++RG K   S +KE   + I   +     +VD+  
Sbjct: 204 TKLDNLRPDEVTMVSLVPACAQLGNLERG-KFLHSYSKELDKFEINCDLVLETALVDMYA 262

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           + G ++ A  +      R+  + W  L+G 
Sbjct: 263 KCGSIDLALQVFRRMRVRNVFT-WNALIGG 291


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 122/317 (38%), Positives = 195/317 (61%), Gaps = 5/317 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV+ ++LV+MY K G ++ +H VFD++ +K+++S + L+ GY Q G     I  +  ME
Sbjct: 358 DVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMME 417

Query: 80  E-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
           E      +  ++  ++ A + + AL+ G ++H + I+ S   DV + + L+DLY KCG +
Sbjct: 418 ECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRL 477

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           + A  +F ++P    + WN++I+    +GRGEEAL++F DM     K DH++F+ +LSAC
Sbjct: 478 EDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSAC 537

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           SH GL+D G+K F  M KEY IKP ++HY CMVDLLGRAG LE+A  L+ N   + D+S+
Sbjct: 538 SHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASI 597

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LL AC  + NA +    + +++E+  +    YVLL N+Y    +W    K+R+L + 
Sbjct: 598 WGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARD 657

Query: 315 SGVKKMPGKSWIEANSK 331
            G++K PG S +   SK
Sbjct: 658 RGLRKTPGWSSVVVGSK 674



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 154/301 (51%), Gaps = 16/301 (5%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++HA ++  G   N+V+ + L+++Y   G +  S   FD + KKN  S ++++  Y + 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 66  GDFESVIRIFREMEEI--------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           G +   +    ++  +        D ++F  +L+AC  L     GK+VHC   +     D
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDD 155

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + ++LV LY++ G +D AH++F+ MPV+++ +WN+MISGF QNG    AL + + M  
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG 215

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K D ++   +L  C+    +  G      + K + +   +   N ++++  + G L+
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK-HGLDSDVFVSNALINMYSKFGRLQ 274

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK--KIMELKPDCHLSYVLLDNV 295
           +A+ + +  + R D   W  ++ A     +   A R  K  ++  ++PD  L+ V L ++
Sbjct: 275 DAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDL-LTVVSLTSI 332

Query: 296 Y 296
           +
Sbjct: 333 F 333



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 154/315 (48%), Gaps = 11/315 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+VH  V  +G   +V V +SLV +Y + G++D +H+VF  M  K+  S +A++ G
Sbjct: 137 LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISG 196

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +CQ G+    + +   M+    ++D  +   +L  CA    +  G  +H   ++     D
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+++Y+K G +  A  +F QM VR+L++WNS+I+ + QN     ALR F  M  
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           GG +PD ++ + + S  S +      R     + +   +   +   N +V++  + G + 
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV-AKKIMELKPDC---HLSYVLLD 293
            A T+ +    R D+  W  L+   T  +N   +E + A  +ME   D      ++V + 
Sbjct: 377 CAHTVFDQLP-RKDTISWNTLVTGYT--QNGLASEAIDAYNMMEECRDTIPNQGTWVSII 433

Query: 294 NVYRAVGRWNDAFKI 308
             Y  VG      KI
Sbjct: 434 PAYSHVGALQQGMKI 448



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 93/182 (51%), Gaps = 6/182 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG ++HAK+I   L  +V V + L+D+YGKCG ++++  +F ++ +  SV  +A++  
Sbjct: 442 LQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIAS 501

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  +++F++M     + D  +F  +L AC+    +  G++      +  G K 
Sbjct: 502 LGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKP 561

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
            +     +VDL  + G ++ A+++   MP++ +   W +++S     G  E      D +
Sbjct: 562 SLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRL 621

Query: 176 TE 177
            E
Sbjct: 622 LE 623


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 200/336 (59%), Gaps = 12/336 (3%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +EVH  +I  G   +VV+ ++L+  Y   GL++ +H+VF++M  ++ VS ++++  YCQT
Sbjct: 128 REVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQT 187

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  E  ++++ +M       D F+   +L +CA + AL +G ++H     R   +++ + 
Sbjct: 188 GLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVG 247

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +AL+D+YAKCG +  A  IF  MP R++ TWNSMI G+  +GRG+EA+  F  M   G +
Sbjct: 248 NALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVR 307

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+ ++F+G+L  CSH GL+  G ++F  M+ E+ +KP I+HY CMVDL GRAG L+EA  
Sbjct: 308 PNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALE 367

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP----DCHLSYVLLDNVYR 297
           +I ++  +HD  LW  LLG+C   RN  + E   + +++L      DC    VLL  +Y 
Sbjct: 368 VIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDC----VLLSGIYA 423

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
                    ++R L++  G+K  PG SWIE   +++
Sbjct: 424 EAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVH 459



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H       L  N+ V ++L+DMY KCG +  +  +F+ M K++  + ++++ G
Sbjct: 225 LHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVG 284

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKE----VHCQYIRRS 113
           Y   G  +  I  F  M       +  +F  +L  C+    ++ G +    +  ++  + 
Sbjct: 285 YGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKP 344

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           G K       +VDL+ + G +  A ++    P + + + W +++
Sbjct: 345 GIKHY---GCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLL 385


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 122/317 (38%), Positives = 195/317 (61%), Gaps = 5/317 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV+ ++LV+MY K G ++ +H VFD++ +K+++S + L+ GY Q G     I  +  ME
Sbjct: 358 DVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMME 417

Query: 80  E-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
           E      +  ++  ++ A + + AL+ G ++H + I+ S   DV + + L+DLY KCG +
Sbjct: 418 ECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRL 477

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           + A  +F ++P    + WN++I+    +GRGEEAL++F DM     K DH++F+ +LSAC
Sbjct: 478 EDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSAC 537

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           SH GL+D G+K F  M KEY IKP ++HY CMVDLLGRAG LE+A  L+ N   + D+S+
Sbjct: 538 SHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASI 597

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LL AC  + NA +    + +++E+  +    YVLL N+Y    +W    K+R+L + 
Sbjct: 598 WGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARD 657

Query: 315 SGVKKMPGKSWIEANSK 331
            G++K PG S +   SK
Sbjct: 658 RGLRKTPGWSSVVVGSK 674



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 154/315 (48%), Gaps = 11/315 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+VH  V  +G   +V V +SLV +Y + G++D +H+VF  M  K+  S +A++ G
Sbjct: 137 LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISG 196

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +CQ G+    + +   M+    ++D  +   +L  CA    +  G  +H   ++     D
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+++Y+K G +  A  +F QM VR+L++WNS+I+ + QN     ALR F  M  
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           GG +PD ++ + + S  S +      R     + +   +   +   N +V++  + G + 
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV-AKKIMELKPDC---HLSYVLLD 293
            A T+ +    R D+  W  L+   T  +N   +E + A  +ME   D      ++V + 
Sbjct: 377 CAHTVFDQLP-RKDTISWNTLVTGYT--QNGLASEAIDAYNMMEECRDTIPNQGTWVSII 433

Query: 294 NVYRAVGRWNDAFKI 308
             Y  VG      KI
Sbjct: 434 PAYSHVGALQQGMKI 448



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 154/301 (51%), Gaps = 16/301 (5%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K++HA ++  G   N+V+ + L+++Y   G +  S   FD + KKN  S ++++  Y + 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 66  GDFESVIRIFREMEEI--------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           G +   +    ++  +        D ++F  +L+AC  L     GK+VHC   +     D
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDD 155

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + ++LV LY++ G +D AH++F+ MPV+++ +WN+MISGF QNG    AL + + M  
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG 215

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K D ++   +L  C+    +  G      + K + +   +   N ++++  + G L+
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK-HGLDSDVFVSNALINMYSKFGRLQ 274

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK--KIMELKPDCHLSYVLLDNV 295
           +A+ + +  + R D   W  ++ A     +   A R  K  ++  ++PD  L+ V L ++
Sbjct: 275 DAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDL-LTVVSLTSI 332

Query: 296 Y 296
           +
Sbjct: 333 F 333



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 93/182 (51%), Gaps = 6/182 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG ++HAK+I   L  +V V + L+D+YGKCG ++++  +F ++ +  SV  +A++  
Sbjct: 442 LQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIAS 501

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  +++F++M     + D  +F  +L AC+    +  G++      +  G K 
Sbjct: 502 LGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKP 561

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
            +     +VDL  + G ++ A+++   MP++ +   W +++S     G  E      D +
Sbjct: 562 SLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRL 621

Query: 176 TE 177
            E
Sbjct: 622 LE 623


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 208/336 (61%), Gaps = 8/336 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K GK++HA  I   L  ++ V ++L+D+Y KCG ++ +  +FD+  +K+ VS + L+ G
Sbjct: 438 VKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRS-EKDGVSYNTLIVG 496

Query: 62  YCQTGD-FESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q+   FES + +F++M     E D  SF   L AC+ L+A + GKE+H   ++R    
Sbjct: 497 YSQSQCCFES-LHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDS 555

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + ++L+D+Y K G +D A +IF ++  +++ +WN+MI G+  +G+ + A  +FD M 
Sbjct: 556 HPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMK 615

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G + DHVS+I VLS CSH GL+DRG+K+F+ M  +  IKP+  HY CMVDLLGRAG L
Sbjct: 616 DDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQ-NIKPQQMHYACMVDLLGRAGQL 674

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            E+  +I N   R +S +W  LLG+C    +  +A   A+ + ELKP+    Y LL N+Y
Sbjct: 675 SESAEIIRNMPFRANSDVWGALLGSCRIHGDIELARLAAEHLFELKPENSGYYTLLRNMY 734

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
              G WN+A  ++ LMK   V+K P  SW+++ +KL
Sbjct: 735 SESGMWNEANGVKKLMKSRKVQKNPAYSWVQSGNKL 770



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 134/245 (54%), Gaps = 7/245 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH  V+  GL   V + ++LVDMYGK G ++ S  VF+ M +KN VS ++ +  +   G 
Sbjct: 242 VHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGF 301

Query: 68  FESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            E V+ +FR M E D+     +   +L A   L    LGKE+H   IRR+   D+ I + 
Sbjct: 302 HEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANT 361

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L+D+YAK GC + A  IF  + VRN+++WN+MI+   QNG   EA R+  +M + G  P+
Sbjct: 362 LMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPN 421

Query: 184 HVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
             + + +L ACS +  +  G++ H  S+ +   +   +   N ++D+  + G L  A  +
Sbjct: 422 SFTLVNLLPACSRVASVKMGKQIHAWSIRRS--LMSDLFVSNALIDVYAKCGQLNLARYI 479

Query: 243 IENAD 247
            + ++
Sbjct: 480 FDRSE 484



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 147/260 (56%), Gaps = 9/260 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GKE+H   I   +  ++ + ++L+DMY K G  +++  +F+ +  +N VS +A++    Q
Sbjct: 340 GKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQ 399

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G      R+  EM++     + F+   +L AC+ +A++++GK++H   IRRS   D+ +
Sbjct: 400 NGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFV 459

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+YAKCG ++ A  IF     ++ +++N++I G++Q+    E+L +F  M   G 
Sbjct: 460 SNALIDVYAKCGQLNLARYIF-DRSEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGI 518

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           + D VSF+G LSACS++    +G++ H   + +     P +   N ++D+  + G+L+ A
Sbjct: 519 EHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLA--NSLLDVYTKGGMLDTA 576

Query: 240 ETLIENADCRHDSSLWEVLL 259
             +  N   + D + W  ++
Sbjct: 577 SKIF-NRITQKDVASWNTMI 595



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 141/300 (47%), Gaps = 18/300 (6%)

Query: 4   QGKEVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +G E+HA  +  GL   +V   ++LV  Y  CG   ++ RVFD+M  ++ VS ++L+   
Sbjct: 136 KGAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSAL 195

Query: 63  CQTGDFE----SVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G  E    +V+ + R    +++ S   +L AC        G  VH   ++      V
Sbjct: 196 LTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVV 255

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +ALVD+Y K G ++ +  +F  M  +N ++WNS I  FA  G  E+ L +F  M+E 
Sbjct: 256 NLGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEH 315

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAG 234
              P  V+   +L A     L+D G  H       Y I+  +E      N ++D+  + G
Sbjct: 316 DVTPGSVTLSSLLPA-----LVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFG 370

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI-MELKPDCHLSYVLLD 293
             E+A  + EN + R+  S W  ++   T  +N   AE     I M+   +C  S+ L++
Sbjct: 371 CSEKASAIFENIEVRNVVS-WNAMIANLT--QNGAEAEAFRLVIEMQKNGECPNSFTLVN 427



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  AL+  YA    +  AH I    P  +R+   WNS+    A      EALR+++ M  
Sbjct: 49  LAGALLLSYAALPDIPSAHLILRHHPFRLRSAFLWNSLSRALASAALPCEALRVYNRMVR 108

Query: 178 GGTKPDHVSF 187
            G +PD  +F
Sbjct: 109 SGVRPDDRTF 118


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 126/333 (37%), Positives = 202/333 (60%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA     G   NV V SSLVDMY +CG + E+  VFDK+  KN VS +AL+ GY +
Sbjct: 194 GRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYAR 253

Query: 65  TGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G+ E  + +F    RE      F++  +L +C+ +  L  GK +H   ++ S      +
Sbjct: 254 KGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYV 313

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L+ +YAK G +  A ++F ++   ++++ NSM+ G+AQ+G G+EA + FD+M   G 
Sbjct: 314 GNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGI 373

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +P+ ++F+ VL+ACSH  L+D G KH+  + ++Y I+PK+ HY  +VDLLGRAGLL++A+
Sbjct: 374 EPNDITFLSVLTACSHARLLDEG-KHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAK 432

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
           + IE        ++W  LLGA    +N  +    A+++ EL P    ++ LL N+Y + G
Sbjct: 433 SFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAG 492

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           RW D  K+R +MK SGVKK P  SW+E  + ++
Sbjct: 493 RWEDVAKVRKIMKDSGVKKEPACSWVEVENSVH 525



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 150/252 (59%), Gaps = 13/252 (5%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +LK+GK VH  V+      ++V+++SL+ MY +CG ++ + R+FD+M  ++ VS ++++ 
Sbjct: 89  KLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMIT 148

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVH-CQYIRRSGC 115
           GY Q       + +F  M     E + F+   +++ C  +A+   G+++H C +  + GC
Sbjct: 149 GYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCW--KYGC 206

Query: 116 -KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             +V + S+LVD+YA+CG +  A  +F ++  +N ++WN++I+G+A+ G GEEAL +F  
Sbjct: 207 HSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVR 266

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGR 232
           M   G +P   ++  +LS+CS MG +++G+   A + K  +   K+  Y  N ++ +  +
Sbjct: 267 MQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQ---KLVGYVGNTLLHMYAK 323

Query: 233 AGLLEEAETLIE 244
           +G + +AE + +
Sbjct: 324 SGSIRDAEKVFD 335



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 2/182 (1%)

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E D   +  +L+ C  L  L+ GK VH   +  +   D++I+++L+ +YA+CG ++ A +
Sbjct: 71  EPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARR 130

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F +MP R++++W SMI+G+AQN R  +AL +F  M   G +P+  +   ++  C +M  
Sbjct: 131 LFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMAS 190

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            + GR+  A   K Y     +   + +VD+  R G L EA  + +   C+++ S W  L+
Sbjct: 191 YNCGRQIHACCWK-YGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS-WNALI 248

Query: 260 GA 261
             
Sbjct: 249 AG 250


>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 195/330 (59%), Gaps = 5/330 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +H         G+V V S+++DMY KCG + ++ RVFD+M ++N VS SAL+ GY   G 
Sbjct: 148 LHGLASKTPFAGDVFVGSAVLDMYAKCGNLSDARRVFDEMPERNVVSWSALIGGYADAGM 207

Query: 68  FESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
             S + IFR    E  +++ F+   ++R CA      LG +VH + I+ +      + S+
Sbjct: 208 HPSALCIFRSALEEAVQVNDFTVSCIVRVCAAATLFELGAQVHARSIKTALDASPFVGSS 267

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           LV LY+KCG VD A+++F   P RNL  WN+++   AQ+G    A   F  M   G +P+
Sbjct: 268 LVSLYSKCGLVDCAYRVFSAAPERNLGIWNAVLIASAQHGHTSTAFERFTKMQHAGFRPN 327

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
            ++F+ +L+ACSH GL+D G+++F S+ KEYRI+P++EHY  MVDLLGR G + EA  LI
Sbjct: 328 FITFLCLLTACSHAGLVDEGKRYF-SLMKEYRIEPEVEHYAAMVDLLGRVGRITEALDLI 386

Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
           E+       S+W  LL AC  F++A  A   AK++ E       +++LL + Y A GR  
Sbjct: 387 ESMPMEPPDSVWGALLMACRMFKDADTAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHV 446

Query: 304 DAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           DA   R  M+ +G++K  G SW+EA  +++
Sbjct: 447 DAALARKAMRDAGIRKETGLSWLEAAGEVH 476



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 15/200 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VHA+ I   L  +  V SSLV +Y KCGLVD ++RVF    ++N    +A+L    Q
Sbjct: 246 GAQVHARSIKTALDASPFVGSSLVSLYSKCGLVDCAYRVFSAAPERNLGIWNAVLIASAQ 305

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G   +    F +M+      +  +F  +L AC+    +  GK             +V  
Sbjct: 306 HGHTSTAFERFTKMQHAGFRPNFITFLCLLTACSHAGLVDEGKRYFSLMKEYRIEPEVEH 365

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISGFAQNGRGEEALRIFDDMTEGG 179
            +A+VDL  + G +  A  +   MP+    + W +++           A R+F D     
Sbjct: 366 YAAMVDLLGRVGRITEALDLIESMPMEPPDSVWGALLM----------ACRMFKDADTAA 415

Query: 180 TKPDHVSFIGVLSACSHMGL 199
                +   G  S+ +HM L
Sbjct: 416 IAAKRLFETGSRSSGAHMLL 435



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV-----DLYAKCGCVDFAHQIFLQ 143
           +L A +   AL  G+++H   ++      V    AL+       YA+C   + + + FL 
Sbjct: 21  LLVALSAARALPKGQQLHGHLLKGGHLPAVASSHALLAHHLLTFYARCSLPELSLRAFLD 80

Query: 144 MPVR-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +P   +   W+S+IS FAQNG    A   F  M   G  
Sbjct: 81  LPASPSPAAWSSLISSFAQNGLPAAAFDAFRRMLAAGVP 119


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 130/337 (38%), Positives = 205/337 (60%), Gaps = 7/337 (2%)

Query: 3   KQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           K  + VH  ++  G L  +VV+ +++VDMY K GL+D +H+VF+ +L K+ +S + L+ G
Sbjct: 434 KNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITG 493

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q G     I +++ MEE      +  ++  +L A A + AL+ G  +H + I+ +   
Sbjct: 494 YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHL 553

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV + + L+D+Y KCG +  A  +F Q+P  + +TWN++IS    +G  E+ L++F +M 
Sbjct: 554 DVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEML 613

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G KPDHV+F+ +LSACSH G ++ G+  F  M +EY IKP ++HY CMVDLLGRAG L
Sbjct: 614 DEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYL 672

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E A   I++   + D+S+W  LLGAC    N  + +  + ++ E+       YVLL N+Y
Sbjct: 673 EMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIY 732

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             VG+W    K+R+L +  G+KK PG S IE N K++
Sbjct: 733 ANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVD 769



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 124/244 (50%), Gaps = 17/244 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            K +HA ++  G   ++ + + LV++Y   G V  S   FD++ +K+  + ++++  Y  
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVH 194

Query: 65  TGDFESVIRIFREM---EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            G F   I  F ++    EI  D ++F  VL+AC  L     G+ +HC   +     +V 
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVF 251

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+ +Y++ G    A  +F  MP R++ +WN+MISG  QNG   +AL + D+M   G
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGL 235
            K + V+ + +L  C  +G I       A +   Y IK  +E      N ++++  + G 
Sbjct: 312 IKMNFVTVVSILPVCPQLGDIST-----AMLIHLYVIKHGLEFDLFVSNALINMYAKFGN 366

Query: 236 LEEA 239
           LE+A
Sbjct: 367 LEDA 370



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 116/247 (46%), Gaps = 4/247 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H     LG   NV V +SL+ MY + G    +  +FD M  ++  S +A++ G
Sbjct: 231 LVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISG 290

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G+    + +  EM     +++  +   +L  C  L  +     +H   I+     D
Sbjct: 291 LIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFD 350

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+++YAK G ++ A + F QM + ++++WNS+I+ + QN     A   F  M  
Sbjct: 351 LFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQL 410

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD ++ + + S  +        R     + +   +   +   N +VD+  + GLL+
Sbjct: 411 NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLD 470

Query: 238 EAETLIE 244
            A  + E
Sbjct: 471 SAHKVFE 477



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 81/151 (53%), Gaps = 6/151 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG  +H +VI   L  +V V + L+D+YGKCG + ++  +F ++ +++SV+ +A++  
Sbjct: 536 LQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISC 595

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G  E  +++F EM +     D  +F  +L AC+    +  GK    + ++  G K 
Sbjct: 596 HGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKP 654

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR 147
            +     +VDL  + G ++ A+     MP++
Sbjct: 655 SLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQ 685


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 135/334 (40%), Positives = 208/334 (62%), Gaps = 10/334 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++HA+++  G   +  V+SSLV+ Y KC  +  + +VFD++ ++N V  SA++ G
Sbjct: 108 LEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSG 167

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G     + +FREM+    E D  S   VL ACA + AL +GK VH    +R    D
Sbjct: 168 YARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVD 227

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+++YAKCGC++ A +IF +M V++   W+SMI G A +G  E+AL +F  M E
Sbjct: 228 LELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEE 287

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KP+HV+FIG+LSAC+H GL+  G+++++SM  E  I+P +EHY CMVDLL R GL++
Sbjct: 288 AQAKPNHVTFIGILSACAHGGLVSDGKRYWSSML-ELGIEPSMEHYGCMVDLLCRGGLID 346

Query: 238 EAE--TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           EA    LI       D  +W  LL A T  R    AE VA K++EL+P    +Y++L N+
Sbjct: 347 EAYDFALIIPTP---DPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANL 403

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           Y +V +      +R +MK +G+K +PG + IE +
Sbjct: 404 YASVSQLEKVSHVRKMMKENGIKALPGCTSIEVD 437



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 142/265 (53%), Gaps = 13/265 (4%)

Query: 35  GLVDESHRVFDKMLKKNSVSSSALLQG--YCQTGDFESVIRIFREM-----EEIDLFSFG 87
           G  D + ++F ++      + +++++G  Y +    E  I +F++M        + F+  
Sbjct: 38  GNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEP-IHLFKDMVGKGYPNPNTFTMA 96

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
            VL+AC+ + AL  GK++H Q +R        ++S+LV+ Y+KC  +  A ++F ++  R
Sbjct: 97  FVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITER 156

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           NL+ W++M+SG+A+ G   EAL +F +M   G +PD VS +GVLSAC+ +G +D G K  
Sbjct: 157 NLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIG-KWV 215

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
            +  K+  I   +E    ++++  + G +E+A  + +    + DS  W  ++        
Sbjct: 216 HAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVK-DSKAWSSMIVGLAIHGL 274

Query: 268 AHVAERVAKKIME--LKPDCHLSYV 290
           A  A  V  ++ E   KP+ H++++
Sbjct: 275 AEDALNVFSRMEEAQAKPN-HVTFI 298


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 125/331 (37%), Positives = 203/331 (61%), Gaps = 7/331 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +  GK++HA VI  G   N+ V +S++D+Y +CG + E+   F +M  K+ ++ + L+  
Sbjct: 229 VTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISE 288

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             ++   E+++ +F+  E      + ++F  ++ ACA +AAL  G+++H +  RR   K+
Sbjct: 289 LERSDSSEALL-MFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKN 347

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           V + +AL+D+YAKCG +  + ++F ++   RNL++W SM+ G+  +G G EA+ +FD M 
Sbjct: 348 VELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMV 407

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD + F+ VLSAC H GL+++G K+F  M  EY I P  + YNC+VDLLGRAG +
Sbjct: 408 SSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKI 467

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFR-NAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            EA  L+E    + D S W  +LGAC   + N  ++   A+K+MELKP    +YV+L  +
Sbjct: 468 GEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLSYI 527

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           Y A G+W D  ++R +M+  G KK  G SWI
Sbjct: 528 YAAEGKWVDFARVRKMMRMMGNKKEAGMSWI 558



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 152/290 (52%), Gaps = 9/290 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESH-RVFDKMLKKNSVSSSALLQ 60
           L  G  VH  V+ LG+ G++ V++++++MY  C +  E+   +F  +  KN V+ + L+ 
Sbjct: 127 LAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLIT 186

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+   GD    ++++++M     E+  +   I +RA A + ++  GK++H   I+R    
Sbjct: 187 GFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQS 246

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ + ++++DLY +CG +  A   F +M  ++LITWN++IS   +     EAL +F    
Sbjct: 247 NLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISEL-ERSDSSEALLMFQRFE 305

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+  +F  +++AC+++  ++ G++    + +       +E  N ++D+  + G +
Sbjct: 306 SQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRR-GFNKNVELANALIDMYAKCGNI 364

Query: 237 EEAETLI-ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPD 284
            +++ +  E  D R+  S   +++G  +    A   E   K +   ++PD
Sbjct: 365 PDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPD 414



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 117/243 (48%), Gaps = 7/243 (2%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM--- 78
           ++ ++L+  Y + GLV+E+  +FD+M  ++ V+ +A++ GY  +         F EM   
Sbjct: 46  ILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQ 105

Query: 79  -EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG-CVDF 136
               + F+   VL++C  +  L  G  VH   ++      + +++A++++YA C   ++ 
Sbjct: 106 GTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEA 165

Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
           A  IF  + V+N +TW ++I+GF   G G   L+++  M     +         + A + 
Sbjct: 166 ACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASAS 225

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
           +  +  G++  AS+ K    +  +   N ++DL  R G L EA+      + + D   W 
Sbjct: 226 IDSVTTGKQIHASVIKR-GFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDK-DLITWN 283

Query: 257 VLL 259
            L+
Sbjct: 284 TLI 286



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 87/185 (47%), Gaps = 7/185 (3%)

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
           + +Y      K  I+ + L+  Y + G V+ A  +F +MP R+++ W +MI+G+A +   
Sbjct: 33  NTEYPPYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYN 92

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225
             A   F +M + GT P+  +   VL +C +M ++  G      + K   ++  +   N 
Sbjct: 93  ARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVK-LGMEGSLYVDNA 151

Query: 226 MVDLLGRAGLLEEAETLI-ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM----E 280
           M+++     +  EA  LI  +   ++D + W  L+   T   +     ++ K+++    E
Sbjct: 152 MMNMYATCSVTMEAACLIFRDIKVKNDVT-WTTLITGFTHLGDGIGGLKMYKQMLLENAE 210

Query: 281 LKPDC 285
           + P C
Sbjct: 211 VTPYC 215


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 203/368 (55%), Gaps = 38/368 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA  +      + VV+SSL+DMY KCG+ +++ +VFD +  KN V  +AL+ GY  
Sbjct: 30  GRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYAS 89

Query: 65  TGDFESVIRIFREMEEIDLFSF------------------------------------GI 88
            G     I +FR M E  LF++                                      
Sbjct: 90  NGCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVEMRRDGVRIDDAFVLAT 149

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           V+   A LAAL LG+++H   I       +I+ +ALVD+Y+KC  +  A ++F  + VR+
Sbjct: 150 VVGGAAELAALVLGRQLHGFAITLGFLSSMIVGNALVDMYSKCSDIHSAREVFGGIIVRD 209

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +++W +++ G AQ+GR EE L ++D M   G KP+ V+F+G++ ACSH GL+ +GR+ F 
Sbjct: 210 VVSWTTILVGEAQHGRVEEVLALYDRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFD 269

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
           SM +EY IKP ++HY C +DLL R+G L EAE LI       D + W  LL AC    + 
Sbjct: 270 SMKREYGIKPGLQHYTCYLDLLSRSGYLSEAEELITTMPYEPDEASWGALLSACKKHNDT 329

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            +  RVA  ++EL+P    +Y+LL NVY    +W+   K+R +M    ++K PG SWIEA
Sbjct: 330 QMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKEPGYSWIEA 389

Query: 329 --NSKLNH 334
              S++ H
Sbjct: 390 GRESRMFH 397


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 212/340 (62%), Gaps = 5/340 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+ +H+ VI  G    + V++SL+ +Y  CG V  +++VFDKM +K+ V+ ++++ G
Sbjct: 137 VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 196

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + + G  E  + ++ EM     + D F+   +L ACA + AL LGK VH   I+    ++
Sbjct: 197 FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 256

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           +   + L+DLYA+CG V+ A  +F +M  +N ++W S+I G A NG G+EA+ +F  M +
Sbjct: 257 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMES 316

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P  ++F+G+L ACSH G++  G ++F  M +EY+I+P+IEH+ CMVDLL RAG +
Sbjct: 317 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQV 376

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           ++A   I++   + +  +W  LLGACT   ++ +AE    +I++L+P+    YVLL N+Y
Sbjct: 377 KKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMY 436

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            +  RW+D  KIR  M   GVKK+PG S +E  ++++  L
Sbjct: 437 ASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFL 476



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 133/227 (58%), Gaps = 7/227 (3%)

Query: 40  SHRVFDKMLKK-NSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFGIVLRAC 93
           +H+VF K+ K  N    + L++GY + G+  S   ++REM      E D  ++  +++A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131

Query: 94  AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
             +A +RLG+ +H   IR      + ++++L+ LYA CG V  A+++F +MP ++L+ WN
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           S+I+GFA+NG+ EEAL ++ +M   G KPD  + + +LSAC+ +G +  G++    M K 
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK- 250

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             +   +   N ++DL  R G +EEA+TL +    ++  S   +++G
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG 297


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 200/335 (59%), Gaps = 5/335 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G+E+H  +I  G      +  +++DMY KCG ++ ++ +F+++ K++ VS ++++  
Sbjct: 457 LKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITR 516

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q+ +  + I IFR+M       D  S    L ACA L +   GK +H   I+ S   D
Sbjct: 517 CAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASD 576

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V  ES L+D+YAKCG +  A  +F  M  +N+++WNS+I+    +G+ +++L +F +M E
Sbjct: 577 VYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVE 636

Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD ++F+ ++S+C H+G +D G + F SMT++Y I+P+ EHY C+VDL GRAG L
Sbjct: 637 KSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRL 696

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EA   +++     D+ +W  LLGAC   +N  +AE  + K+M+L P     YVL+ N +
Sbjct: 697 TEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAH 756

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
                W    K+R+LMK   V+K+PG SWIE N +
Sbjct: 757 ANAREWESVTKVRSLMKEREVQKIPGYSWIEINKR 791



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H  V+  G+     +++SL+ MY KCG  D++ ++F  M + ++V+ + ++ GY Q
Sbjct: 258 GVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQ 317

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +G  E  +  F EM       D  +F  +L + +    L   K++HC  +R S   D+ +
Sbjct: 318 SGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFL 377

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SAL+D Y KC  V  A  IF Q    +++ + +MISG+  NG   ++L +F  + +   
Sbjct: 378 TSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKI 437

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNC-MVDLLGRAGLLEE 238
            P+ ++ + +L     +  +  GR+ H   + K +  +  I    C ++D+  + G +  
Sbjct: 438 SPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNI---GCAVIDMYAKCGRMNL 494

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           A  + E    + D   W  ++  C    N   A  + +++
Sbjct: 495 AYEIFERLS-KRDIVSWNSMITRCAQSDNPSAAIDIFRQM 533



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 107/188 (56%), Gaps = 4/188 (2%)

Query: 12  VITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESV 71
           V +LG+  N  V SSL+  Y + G +D   ++FD++L+K+ V  + +L GY + G  +SV
Sbjct: 164 VSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSV 223

Query: 72  IRIFR--EMEEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127
           I+ F    M++I  +  +F  VL  CA    + LG ++H   +      +  I+++L+ +
Sbjct: 224 IKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSM 283

Query: 128 YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187
           Y+KCG  D A ++F  M   + +TWN MISG+ Q+G  EE+L  F +M   G  PD ++F
Sbjct: 284 YSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITF 343

Query: 188 IGVLSACS 195
             +L + S
Sbjct: 344 SSLLPSVS 351



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 136/268 (50%), Gaps = 12/268 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  K++H  ++   +  ++ + S+L+D Y KC  V  +  +F +    + V  +A++ G
Sbjct: 356 LEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISG 415

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y   G +   + +FR +        EI L S   +L     L AL+LG+E+H   I++  
Sbjct: 416 YLHNGLYIDSLEMFRWLVKVKISPNEITLVS---ILPVIGILLALKLGRELHGFIIKKGF 472

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
                I  A++D+YAKCG ++ A++IF ++  R++++WNSMI+  AQ+     A+ IF  
Sbjct: 473 DNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQ 532

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G   D VS    LSAC+++     G+     M K + +   +   + ++D+  + G
Sbjct: 533 MGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIK-HSLASDVYSESTLIDMYAKCG 591

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGAC 262
            L+ A  + +    ++  S W  ++ AC
Sbjct: 592 NLKAAMNVFKTMKEKNIVS-WNSIIAAC 618



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 157/342 (45%), Gaps = 45/342 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSS-SALL 59
           L+QGK+VHA +I   + G+   +  ++ MY  CG   +  ++F ++ L+++S+   ++++
Sbjct: 51  LRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSII 110

Query: 60  QGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG- 114
             + + G     +  + +M       D+ +F  +++AC  L   + G +     +   G 
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFK-GIDFLSDTVSSLGM 169

Query: 115 -CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
            C +  + S+L+  Y + G +D   ++F ++  ++ + WN M++G+A+ G  +  ++ F 
Sbjct: 170 DCNE-FVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFS 228

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK---------------------------- 205
            M      P+ V+F  VLS C+   LID G +                            
Sbjct: 229 VMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCG 288

Query: 206 HFASMTKEYRIKPKIE--HYNCMVDLLGRAGLLEEAETLIE---NADCRHDSSLWEVLLG 260
            F   +K +R+  + +   +NCM+    ++GL+EE+ T      ++    D+  +  LL 
Sbjct: 289 RFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLP 348

Query: 261 ACTTFRNAHVAERVAKKIM--ELKPDCHLSYVLLDNVYRAVG 300
           + + F N    +++   IM   +  D  L+  L+D  ++  G
Sbjct: 349 SVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRG 390



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           R +EE       ++L+AC+    LR GK+VH   I  S   D   +  ++ +YA CG   
Sbjct: 28  RFLEETIPRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFS 87

Query: 136 FAHQIFLQMPVR--NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
              ++F ++ +R  ++  WNS+IS F +NG   +AL  +  M   G  PD  +F  ++ A
Sbjct: 88  DCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKA 147

Query: 194 C 194
           C
Sbjct: 148 C 148


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 197/348 (56%), Gaps = 22/348 (6%)

Query: 2   LKQGKEVHAKVITLGLCG------------NVVVESSLVDMYGKCGLVDESHRVFDKMLK 49
           L QG E+HA  +   L              +++V ++L+DMY KC     +  +FD + +
Sbjct: 411 LSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPR 470

Query: 50  K--NSVSSSALLQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRL 101
           +  N V+ + ++ GY Q GD    ++IF EM         + ++   +L ACA LAALR+
Sbjct: 471 RERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRM 530

Query: 102 GKEVHCQYIRRSGCKDVI--IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF 159
           GK++H    R    +  +  + + L+D+Y+KCG VD A  +F  MP RN ++W SM+SG+
Sbjct: 531 GKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGY 590

Query: 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219
             +GRG+EAL IFD M + G  PD +SF+ +L ACSH G++D+G  +F  M ++Y +   
Sbjct: 591 GMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVAS 650

Query: 220 IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM 279
            EHY C++DLL R G L++A   I+       + +W  LL AC    N  +AE    K++
Sbjct: 651 AEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLV 710

Query: 280 ELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            +K +   SY L+ N+Y    RW D  +IR LMK SG+KK PG SW++
Sbjct: 711 NMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQ 758



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 152/315 (48%), Gaps = 56/315 (17%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L Q KE+H+  I  G   +  V ++L+D Y KCG ++++ +VF+ M  K+ VS +A++ G
Sbjct: 275 LPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTG 334

Query: 62  YCQTGDFESVIRIFREM--------------------------EEIDLFSFGI------- 88
           Y Q+G+F +   +F  M                          E +D F   I       
Sbjct: 335 YTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPN 394

Query: 89  ------VLRACAGLAALRLGKEVHCQYIRR------------SGCKDVIIESALVDLYAK 130
                 +L ACA L AL  G E+H   +++               +D+++ +AL+D+Y+K
Sbjct: 395 SVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSK 454

Query: 131 CGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG--GTKPDHVS 186
           C     A  IF  +P   RN++TW  MI G+AQ G   +AL+IF +M        P+  +
Sbjct: 455 CRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYT 514

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-NCMVDLLGRAGLLEEAETLIEN 245
              +L AC+H+  +  G++  A +T+ +  +P +    NC++D+  + G ++ A  + ++
Sbjct: 515 ISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 246 ADCRHDSSLWEVLLG 260
              R++ S   ++ G
Sbjct: 575 MPKRNEVSWTSMMSG 589



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 168/352 (47%), Gaps = 66/352 (18%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQG 61
           G+ +H  +   G   NV V ++LV MY +CG ++++  VFD++ +K   + +S ++++  
Sbjct: 168 GRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAA 227

Query: 62  YCQTGDFESVIRIFREM----------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           + +  +  + + +F EM          E  D+ S   +L ACA L AL   KE+H   IR
Sbjct: 228 HVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIR 287

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG-------- 163
                D  + +AL+D YAKCG ++ A ++F  M  +++++WN+M++G+ Q+G        
Sbjct: 288 NGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFEL 347

Query: 164 -------------------------RG--EEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
                                    RG  +EAL  F  M   G++P+ V+ I +LSAC+ 
Sbjct: 348 FENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACAS 407

Query: 197 MGLIDRGRK-HFASMTK----------EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
           +G + +G + H  S+ K                 +  YN ++D+  +    + A ++ ++
Sbjct: 408 LGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDS 467

Query: 246 ADCRHDSSL-WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
              R  + + W V++G    + +++ A ++  +++  KP     Y +  N Y
Sbjct: 468 IPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMIS-KP-----YAVAPNAY 513



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + +V  Y  CG    A  +  ++     + WN ++    + G  + A+ +   M   GTK
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PDH +    L AC  +     GR     +      +  +   N +V +  R G LE+A  
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRA-LHGLICCNGFESNVFVCNALVAMYSRCGSLEDASL 205

Query: 242 LIE 244
           + +
Sbjct: 206 VFD 208


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 212/369 (57%), Gaps = 44/369 (11%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMY-----------------------------GKC 34
           +G++VH  V   G   N+ V +SLVD+Y                             G C
Sbjct: 145 EGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYC 204

Query: 35  --GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME--------EIDLF 84
             G+VD++  VFD M++KN VS S ++ GY +   +   I +FR+M+        ++ L 
Sbjct: 205 FSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLV 264

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQ 143
           S   VL ACA L AL LGK +H ++IRR+  +  + + +AL D+YAKCGCV  A  +F +
Sbjct: 265 S---VLSACAHLGALDLGKWIH-RFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHE 320

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           M  R++I+W+ +I G A  G   EA   F +M E G +P+ +SF+G+L+AC+H GL+D+G
Sbjct: 321 MHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKG 380

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
            ++F  M + Y I PKIEHY C+VDLL RAG L++AE+LI +   + +  +W  LLG C 
Sbjct: 381 LEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCR 440

Query: 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGK 323
            +++A   ERV  +I+EL  +   S V L NVY ++GR +DA   R  M+ +   K PG 
Sbjct: 441 IYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGC 500

Query: 324 SWIEANSKL 332
           SWIE N+ +
Sbjct: 501 SWIEINNSV 509



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 158/327 (48%), Gaps = 47/327 (14%)

Query: 2   LKQGKEVHAKVITLGLCG--NVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSAL 58
           ++Q  E+ A++I   +      ++    + +    G +  S  +F+  L   N  + +AL
Sbjct: 37  MRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNAL 96

Query: 59  LQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           L+ + Q   + + I  F            D ++F  VL+ACAGLA +  G++VHC ++ +
Sbjct: 97  LKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHC-FVTK 155

Query: 113 SGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVR------------------------ 147
            GC+ ++ + ++LVDLY K GC   A ++F +M VR                        
Sbjct: 156 YGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMV 215

Query: 148 -------NLITWNSMISGFAQNGRGEEALRIFDDMT-EGGTKPDHVSFIGVLSACSHMGL 199
                  NL++W++MISG+A+N +  +A+ +F  M  EGG  P+ V+ + VLSAC+H+G 
Sbjct: 216 FDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGA 275

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +D G K      +  +I+  +   N + D+  + G + EA+ +      R D   W +++
Sbjct: 276 LDLG-KWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHER-DVISWSIII 333

Query: 260 GACTTFRNAHVAERVAKKIME--LKPD 284
                +  A+ A     +++E  L+P+
Sbjct: 334 MGLAMYGYANEAFNFFAEMIEDGLEPN 360


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 129/331 (38%), Positives = 195/331 (58%), Gaps = 5/331 (1%)

Query: 8    VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
            VH  V+  G  G++ V ++L+D Y KCG    S +VFD M +K+ +S ++++  Y Q+G 
Sbjct: 1273 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 1332

Query: 68   FESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
                + +F  M        +  +   VL ACA   ALR GK +H Q I+     +V + +
Sbjct: 1333 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 1392

Query: 123  ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            +++D+Y KCG V+ A + F +M  +N+ +W +M++G+  +GR +EAL IF  M   G KP
Sbjct: 1393 SIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 1452

Query: 183  DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
            ++++F+ VL+ACSH GL++ G   F +M  +Y I+P IEHY CMVDL GRAG L EA  L
Sbjct: 1453 NYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNL 1512

Query: 243  IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302
            I+    + D  +W  LLGAC   +N  + E  A+K+ EL PD    YVLL N+Y   GRW
Sbjct: 1513 IKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRW 1572

Query: 303  NDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             D  ++R LMK   + K PG S +E   +++
Sbjct: 1573 ADVERMRMLMKNRQLVKPPGFSLVELKGRVH 1603



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 144/270 (53%), Gaps = 35/270 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGL---------------------------- 36
           GK VH  +I  G  G+V V+++L+D Y KCG                             
Sbjct: 144 GKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLIS 203

Query: 37  ---VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF----SFGIV 89
              + E+ R+FD++  KN VS +A++ GY +    E  + +F+ M+  ++F    +   +
Sbjct: 204 CGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSL 263

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           ++AC  +  L LG+ +H   I+      V + +AL+D+Y+KCG +  A ++F  MP ++L
Sbjct: 264 IKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSL 323

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
            TWNSMI+    +G G+EAL +F +M     KPD ++FIGVL AC H+  +  G  +F  
Sbjct: 324 PTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTR 383

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           MT+ Y I P  EHY CM +L  R+  L+EA
Sbjct: 384 MTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 22/256 (8%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L  G+  H +    G   ++ V S+L+DMY KCG + ++  +FD++  +N VS ++++ G
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217

Query: 62   YCQTGDFESVIRIFREMEE------------IDLFSFGIVLRACAGLAALRLGKEVHCQY 109
            Y Q    ++ + +F++  E            +D      VL AC+ ++   + + VH   
Sbjct: 1218 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 1277

Query: 110  IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
            +++     + + + L+D YAKCG    + ++F  M  ++ I+WNSMI+ +AQ+G   EAL
Sbjct: 1278 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEAL 1337

Query: 170  RIFDDMTEG-GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC--- 225
             +F  M    G + + V+   VL AC+H G +  G+        +  IK  +E+  C   
Sbjct: 1338 EVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGK-----CIHDQVIKMDLEYNVCVGT 1392

Query: 226  -MVDLLGRAGLLEEAE 240
             ++D+  + G +E A+
Sbjct: 1393 SIIDMYCKCGRVEMAK 1408



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 135/297 (45%), Gaps = 45/297 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K  +++HAK+I  GL  + ++   L+ +Y   G +  +  +F ++    + + + +++ 
Sbjct: 40  FKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA 99

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  + +++ M       D F+F  V++AC    ++ LGK VH   I+     D
Sbjct: 100 NTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGD 159

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS----------------------- 154
           V +++ L+D Y KCG   FA ++F +M VRN+++W +                       
Sbjct: 160 VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219

Query: 155 --------MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
                   MI+G+ +N + EEAL +F  M      P+  + + ++ AC+ MG++  GR  
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG- 278

Query: 207 FASMTKEYRIKPKIE----HYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
                 +Y IK  IE        ++D+  + G +++A  + E    R     W  ++
Sbjct: 279 ----IHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMI 330



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 13/167 (7%)

Query: 44   FDKMLKKNSVSS-SALLQGYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAA 98
            F K + K++V S ++++    + GD    +R F  + ++ L     SF   +++C+ L  
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 99   LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
            L  G+  H Q        D+ + SAL+D+Y+KCG +  A  +F ++P+RN+++W SMI+G
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217

Query: 159  FAQNGRGEEALRIFDDMTE-------GGTKP-DHVSFIGVLSACSHM 197
            + QN + + AL +F D  E       G   P D V  + VLSACS +
Sbjct: 1218 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRV 1264



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 24/170 (14%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L+ GK +H +VI + L  NV V +S++DMY KCG V+ + + FD+M +KN  S +A++ G
Sbjct: 1369 LRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAG 1428

Query: 62   YCQTGDFESVIRIFREM----EEIDLFSFGIVLRAC--AGLA--------ALRLGKEVHC 107
            Y   G  +  + IF +M     + +  +F  VL AC  AGL         A++   ++  
Sbjct: 1429 YGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIE- 1487

Query: 108  QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
              I   GC        +VDL+ + GC++ A+ +  +M ++ + + W S++
Sbjct: 1488 PGIEHYGC--------MVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLL 1529



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 5/191 (2%)

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
            +L+ C     LR   ++H + IR     D ++   L+ LY+  G + +A  +F Q+   
Sbjct: 32  FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
              TWN +I     NG  E+AL ++ +M   G   D  +F  V+ AC++   ID G+   
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
            S+ K Y     +   N ++D   + G    A  + E    R+  S W  ++    +  +
Sbjct: 149 GSLIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVS-WTTVISGLISCGD 206

Query: 268 AHVAERVAKKI 278
              A R+  +I
Sbjct: 207 LQEARRIFDEI 217



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 8/115 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H   I   +   V + ++L+DMY KCG + ++  VF+ M +K+  + ++++  
Sbjct: 273 LTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITS 332

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
               G  +  + +F EME +    D  +F  VL AC  +  ++ G    C Y  R
Sbjct: 333 LGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG----CAYFTR 383



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 148  NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KH 206
            N+ +WNS+I+  A+ G   EALR F  + + G  P   SF   + +CS +  +  GR  H
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 1165

Query: 207  FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              +    +  +  +   + ++D+  + G L++A  L +    R+  S   ++ G
Sbjct: 1166 QQAFV--FGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 131/318 (41%), Positives = 197/318 (61%), Gaps = 4/318 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  +G+ G V ++ +VFD+M +K+  + SA+++ Y + G     + +FR M+
Sbjct: 345 SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQ 404

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 +  S   VL  CAGLA L  G+E+H Q +R     DV + S L+ +Y KCG + 
Sbjct: 405 REGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLA 464

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A Q+F +  V++++ WNS+I+G+AQ+G G EALR+F DM   G  PD V+F+GVLSACS
Sbjct: 465 KAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACS 524

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           + G + +G + F SM  +Y+++ KIEHY CMVDLLGRAG L EA  LIE      D+ +W
Sbjct: 525 YTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIW 584

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGAC T     +AE  AKK++ L+P     ++LL N+Y + GRW+D  ++R  M+  
Sbjct: 585 GALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDR 644

Query: 316 GVKKMPGKSWIEANSKLN 333
            V K PG SWI    K++
Sbjct: 645 RVSKYPGCSWIVVEKKVH 662



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 125/241 (51%), Gaps = 16/241 (6%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N +  + LV  Y   G+++E+  VFD+M ++N VS +A+++GY + G       +F +M 
Sbjct: 159 NTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMP 218

Query: 80  EIDLFSFGIVLRACAGLAALRLGK-EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
           E ++ S+ ++L    GL  L+ G+ +  C+       KDV+  + ++  Y + G +  A 
Sbjct: 219 EKNVVSWTVML---GGL--LQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEAR 273

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +F +MP RN+++W +MI+G+ QN + + A ++F+ M E     + VS+  +L   ++ G
Sbjct: 274 MLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPE----KNEVSWTAMLKGYTNCG 329

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
            +D   + F +M     IK  +   N M+   G+ G + +A  + +      D   W  +
Sbjct: 330 RLDEASELFNAMP----IKSVVA-CNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWSAM 383

Query: 259 L 259
           +
Sbjct: 384 I 384



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 9/202 (4%)

Query: 12  VITLGLCGNVVV-ESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFES 70
           V+    C N ++  +SL+  Y + G ++++  VFD+M  KN +S ++++ GY Q    + 
Sbjct: 88  VLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQE 147

Query: 71  VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
              +F +M E +  S+  ++        +   +EV      R   ++V+  +A+V  Y K
Sbjct: 148 AQNMFDKMSERNTISWNGLVSGYINNGMINEAREV----FDRMPERNVVSWTAMVRGYVK 203

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
            G +  A  +F QMP +N+++W  M+ G  Q GR +EA R+FD M E     D V+   +
Sbjct: 204 EGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPE----KDVVTRTNM 259

Query: 191 LSACSHMGLIDRGRKHFASMTK 212
           +     +G +   R  F  M +
Sbjct: 260 IGGYCQVGRLVEARMLFDEMPR 281



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 4/193 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y + G + E+  +FD+M ++N VS + ++ GY Q    +   ++F  M 
Sbjct: 252 DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP 311

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E +  S+  +L+       L    E+          K V+  +A++  + + G V  A Q
Sbjct: 312 EKNEVSWTAMLKGYTNCGRLDEASEL----FNAMPIKSVVACNAMILCFGQNGEVPKARQ 367

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F QM  ++  TW++MI  + + G   +AL +F  M   G +P+  S I VLS C+ +  
Sbjct: 368 VFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLAN 427

Query: 200 IDRGRKHFASMTK 212
           +D GR+  A + +
Sbjct: 428 LDHGREIHAQLVR 440



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 85/153 (55%), Gaps = 11/153 (7%)

Query: 110 IRRSGCKDVII-ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
           + R  C + II  ++L+  Y++ G ++ A  +F +M  +N+I+WNS+++G+ QN R +EA
Sbjct: 89  LNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEA 148

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
             +FD M+E  T    +S+ G++S   + G+I+  R+ F  M +       +  +  MV 
Sbjct: 149 QNMFDKMSERNT----ISWNGLVSGYINNGMINEAREVFDRMPER-----NVVSWTAMVR 199

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
              + G++ EAETL      ++  S W V+LG 
Sbjct: 200 GYVKEGMISEAETLFWQMPEKNVVS-WTVMLGG 231



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+HA+++      +V V S L+ MY KCG + ++ +VFD+   K+ V  ++++ G
Sbjct: 428 LDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITG 487

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +R+F +M       D  +F  VL AC+    ++ G E+      +   + 
Sbjct: 488 YAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQ 547

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            I   A +VDL  + G ++ A  +  +MP+  + I W +++
Sbjct: 548 KIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALL 588


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 131/318 (41%), Positives = 197/318 (61%), Gaps = 4/318 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  +G+ G V ++ +VFD+M +K+  + SA+++ Y + G     + +FR M+
Sbjct: 345 SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQ 404

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 +  S   VL  CAGLA L  G+E+H Q +R     DV + S L+ +Y KCG + 
Sbjct: 405 REGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLA 464

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A Q+F +  V++++ WNS+I+G+AQ+G G EALR+F DM   G  PD V+F+GVLSACS
Sbjct: 465 KAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACS 524

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           + G + +G + F SM  +Y+++ KIEHY CMVDLLGRAG L EA  LIE      D+ +W
Sbjct: 525 YTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIW 584

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGAC T     +AE  AKK++ L+P     ++LL N+Y + GRW+D  ++R  M+  
Sbjct: 585 GALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDR 644

Query: 316 GVKKMPGKSWIEANSKLN 333
            V K PG SWI    K++
Sbjct: 645 RVSKYPGCSWIVVEKKVH 662



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 125/241 (51%), Gaps = 16/241 (6%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N +  + LV  Y   G+++E+  VFD+M ++N VS +A+++GY + G       +F +M 
Sbjct: 159 NTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMP 218

Query: 80  EIDLFSFGIVLRACAGLAALRLGK-EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
           E ++ S+ ++L    GL  L+ G+ +  C+       KDV+  + ++  Y + G +  A 
Sbjct: 219 EKNVVSWTVML---GGL--LQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEAR 273

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +F +MP RN+++W +MI+G+ QN + + A ++F+ M E     + VS+  +L   ++ G
Sbjct: 274 MLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPE----KNEVSWTAMLKGYTNCG 329

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
            +D   + F +M     IK  +   N M+   G+ G + +A  + +      D   W  +
Sbjct: 330 RLDEASELFNAMP----IKSVVA-CNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWSAM 383

Query: 259 L 259
           +
Sbjct: 384 I 384



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 9/202 (4%)

Query: 12  VITLGLCGNVVV-ESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFES 70
           V+    C N ++  +SL+  Y + G ++++  VFD+M  KN +S ++++ GY Q    + 
Sbjct: 88  VLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQE 147

Query: 71  VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
              +F +M E +  S+  ++        +   +EV      R   ++V+  +A+V  Y K
Sbjct: 148 AQNMFDKMSERNTISWNGLVSGYINNGMINEAREV----FDRMPERNVVSWTAMVRGYVK 203

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
            G +  A  +F QMP +N+++W  M+ G  Q GR +EA R+FD M E     D V+   +
Sbjct: 204 EGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPE----KDVVTRTNM 259

Query: 191 LSACSHMGLIDRGRKHFASMTK 212
           +     +G +   R  F  M +
Sbjct: 260 IGGYCQVGRLVEARMLFDEMPR 281



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 4/193 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y + G + E+  +FD+M ++N VS + ++ GY Q    +   ++F  M 
Sbjct: 252 DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP 311

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E +  S+  +L+       L    E+          K V+  +A++  + + G V  A Q
Sbjct: 312 EKNEVSWTAMLKGYTNCGRLDEASEL----FNAMPIKSVVACNAMILCFGQNGEVPKARQ 367

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F QM  ++  TW++MI  + + G   +AL +F  M   G +P+  S I VLS C+ +  
Sbjct: 368 VFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLAN 427

Query: 200 IDRGRKHFASMTK 212
           +D GR+  A + +
Sbjct: 428 LDHGREIHAQLVR 440



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 85/153 (55%), Gaps = 11/153 (7%)

Query: 110 IRRSGCKDVII-ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
           + R  C + II  ++L+  Y++ G ++ A  +F +M  +N+I+WNS+++G+ QN R +EA
Sbjct: 89  LNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEA 148

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
             +FD M+E  T    +S+ G++S   + G+I+  R+ F  M +       +  +  MV 
Sbjct: 149 QNMFDKMSERNT----ISWNGLVSGYINNGMINEAREVFDRMPER-----NVVSWTAMVR 199

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
              + G++ EAETL      ++  S W V+LG 
Sbjct: 200 GYVKEGMISEAETLFWQMPEKNVVS-WTVMLGG 231



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E+HA+++      +V V S L+ MY KCG + ++ +VFD+   K+ V  ++++ G
Sbjct: 428 LDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITG 487

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +R+F +M       D  +F  VL AC+    ++ G E+      +   + 
Sbjct: 488 YAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQ 547

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            I   A +VDL  + G ++ A  +  +MP+  + I W +++
Sbjct: 548 KIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALL 588


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 200/336 (59%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++HA +       NV V S+LVDMY KC  +  +  VF +M  +N +S +A++ G
Sbjct: 294 LEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVG 353

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    E  +R F EM+    + D F+ G V+ +CA LA+L  G + HC  +     + 
Sbjct: 354 YGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRY 413

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV LY KCG ++ AH++F +M   + ++W ++++G+AQ G+ +E + +F+ M  
Sbjct: 414 ITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLA 473

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+FIGVLSACS  GL+++G  +F SM K++ I P  +HY CM+DL  R+G  +
Sbjct: 474 NGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFK 533

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE  I+      D+  W  LL +C    N  + +  A+ ++E  P    SYVLL +++ 
Sbjct: 534 EAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHA 593

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G+W +   +R  M+   VKK PG SWI+  +K++
Sbjct: 594 AKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVH 629



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 157/318 (49%), Gaps = 41/318 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM----------------- 47
           G  VH +V+ LG      V S LVDMY K GL+ ++ RVF +M                 
Sbjct: 165 GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLR 224

Query: 48  --------------LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIV 89
                         + ++S++ + ++ G  Q G     + +FR M      ID ++FG +
Sbjct: 225 CKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSI 284

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           L AC  LAAL  GK++H  YI R+  +D V + SALVD+Y+KC  +  A  +F +M  RN
Sbjct: 285 LTACGALAALEEGKQIHA-YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +I+W +MI G+ QN   EEA+R F +M   G KPD  +   V+S+C+++  ++ G + F 
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FH 402

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            +     +   I   N +V L G+ G +E+A  L +     HD   W  L+     F  A
Sbjct: 403 CLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVTGYAQFGKA 461

Query: 269 HVAERVAKKIME--LKPD 284
                + +K++   LKPD
Sbjct: 462 KETIDLFEKMLANGLKPD 479



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 125/277 (45%), Gaps = 37/277 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           N+   ++L+       LV +  R+F  M ++++VS +AL+ G+  TG     ++++R + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 79  EEIDLFSFGIVLRA----CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
            E  +    I L A     + L+   LG  VHCQ +R        + S LVD+YAK G +
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 135 DFAHQIFLQMPV-------------------------------RNLITWNSMISGFAQNG 163
             A ++F +M                                 R+ ITW +M++G  QNG
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
              EAL +F  M   G   D  +F  +L+AC  +  ++ G++  A +T+ +  +  +   
Sbjct: 258 LQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTW-YEDNVFVG 316

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           + +VD+  +   +  AE +     CR+  S   +++G
Sbjct: 317 SALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVG 353



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 5/125 (4%)

Query: 95  GLAALRLGKEVHCQYIRRS-GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
           G   +R+   VHC  ++         + + L+  YAK G +  A ++F +MP  NL T N
Sbjct: 24  GRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRN 83

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           +++S  A +    +  R+F  M E     D VS+  +++  S  G   R  + + ++ +E
Sbjct: 84  ALLSALAHSRLVPDMERLFASMPE----RDAVSYNALITGFSSTGSPARSVQLYRALLRE 139

Query: 214 YRIKP 218
             ++P
Sbjct: 140 ESVRP 144


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 200/336 (59%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++HA +       NV V S+LVDMY KC  +  +  VF +M  +N +S +A++ G
Sbjct: 294 LEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVG 353

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    E  +R F EM+    + D F+ G V+ +CA LA+L  G + HC  +     + 
Sbjct: 354 YGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRY 413

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV LY KCG ++ AH++F +M   + ++W ++++G+AQ G+ +E + +F+ M  
Sbjct: 414 ITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLA 473

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD V+FIGVLSACS  GL+++G  +F SM K++ I P  +HY CM+DL  R+G  +
Sbjct: 474 NGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFK 533

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE  I+      D+  W  LL +C    N  + +  A+ ++E  P    SYVLL +++ 
Sbjct: 534 EAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHA 593

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G+W +   +R  M+   VKK PG SWI+  +K++
Sbjct: 594 AKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVH 629



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 157/318 (49%), Gaps = 41/318 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM----------------- 47
           G  VH +V+ LG      V S LVDMY K GL+ ++ RVF +M                 
Sbjct: 165 GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLR 224

Query: 48  --------------LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIV 89
                         + ++S++ + ++ G  Q G     + +FR M      ID ++FG +
Sbjct: 225 CKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSI 284

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           L AC  LAAL  GK++H  YI R+  +D V + SALVD+Y+KC  +  A  +F +M  RN
Sbjct: 285 LTACGALAALEEGKQIHA-YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +I+W +MI G+ QN   EEA+R F +M   G KPD  +   V+S+C+++  ++ G + F 
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FH 402

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            +     +   I   N +V L G+ G +E+A  L +     HD   W  L+     F  A
Sbjct: 403 CLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVTGYAQFGKA 461

Query: 269 HVAERVAKKIME--LKPD 284
                + +K++   LKPD
Sbjct: 462 KETIDLFEKMLANGLKPD 479



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 125/277 (45%), Gaps = 37/277 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           N+   ++L+       LV +  R+F  M ++++VS +AL+ G+  TG     ++++R + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 79  EEIDLFSFGIVLRA----CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
            E  +    I L A     + L+   LG  VHCQ +R        + S LVD+YAK G +
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 135 DFAHQIFLQMPV-------------------------------RNLITWNSMISGFAQNG 163
             A ++F +M                                 R+ ITW +M++G  QNG
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
              EAL +F  M   G   D  +F  +L+AC  +  ++ G++  A +T+ +  +  +   
Sbjct: 258 LQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTW-YEDNVFVG 316

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           + +VD+  +   +  AE +     CR+  S   +++G
Sbjct: 317 SALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVG 353



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 5/125 (4%)

Query: 95  GLAALRLGKEVHCQYIRRS-GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
           G   +R+   VHC  ++         + + L+  YAK G +  A ++F +MP  NL T N
Sbjct: 24  GRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRN 83

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           +++S  A +    +  R+F  M E     D VS+  +++  S  G   R  + + ++ +E
Sbjct: 84  ALLSALAHSRLVPDMERLFASMPE----RDAVSYNALITGFSSTGSPARSVQLYRALLRE 139

Query: 214 YRIKP 218
             ++P
Sbjct: 140 ESVRP 144


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 134/316 (42%), Positives = 189/316 (59%), Gaps = 7/316 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           NV   + ++  Y   GLV E+  VFD M  K+ VS +A++  Y   G +  V+ +F  M 
Sbjct: 206 NVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMML 265

Query: 79  ----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGC 133
               E  D F+   VL ACA L +L  G+ VH  YI + G + +  + +ALVD+Y+KCG 
Sbjct: 266 DDSAERPDGFTLVNVLSACASLGSLSQGEWVHV-YIDKHGIEIEGFVATALVDMYSKCGK 324

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           +D A ++F     R++ TWNS+I+G + +G G++AL IF +M   G KP+ ++FIGVLSA
Sbjct: 325 IDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSA 384

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+H+GL+D+ RK F  M   Y I+P IEHY CMVDLLGR G  EEAE L+        S 
Sbjct: 385 CNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASI 444

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           L E LLGAC  F     AER+A +++E  P     YV + N+Y + GRW++A ++R  M+
Sbjct: 445 LLESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKMR 504

Query: 314 YSGVKKMPGKSWIEAN 329
              VKK PG S IE +
Sbjct: 505 AERVKKNPGCSMIEVD 520



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 53/372 (14%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYG---KCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           ++ HA ++  GL  +    S LV       +   V  +H + +++   N  + +++++ Y
Sbjct: 26  QQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGFTHNSVIRAY 85

Query: 63  CQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
             +   E  + +FREM       D +SF  VL+ACA       G+++H  +++     DV
Sbjct: 86  ANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDV 145

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            +E+ L+++Y + G  + A ++  +MPVR+ ++WNS++S +   G  EEA  +FD+M E 
Sbjct: 146 FVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEER 205

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG---- 234
             +    S+  ++S  +  GL+   R+ F SM  +      +  +N MV      G    
Sbjct: 206 NVE----SWNFMISGYAAAGLVKEAREVFDSMPVK-----DVVSWNAMVTAYAHVGCYNE 256

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE---------------RVAKKIM 279
           +LE    +++++  R D      +L AC +  +    E                VA  ++
Sbjct: 257 VLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALV 316

Query: 280 ELKPDC----HLSYVLLDNVYRAVGRWN-------------DAFKIRTLMKYSGVKKMPG 322
           ++   C        V  D   R V  WN             DA +I + M Y G K   G
Sbjct: 317 DMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKP-NG 375

Query: 323 KSWIEANSKLNH 334
            ++I   S  NH
Sbjct: 376 ITFIGVLSACNH 387



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 6/186 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+ VH  +   G+     V ++LVDMY KCG +D++  VF    K++  + ++++ G
Sbjct: 290 LSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITG 349

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  +  + IF EM        GI    VL AC  +  L   +++        G + 
Sbjct: 350 LSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEP 409

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVRNL-ITWNSMISGFAQNGRGEEALRIFDDM 175
            I     +VDL  + G  + A ++  ++P     I   S++    + G+ E+A RI + +
Sbjct: 410 TIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLESLLGACKRFGKLEQAERIANRL 469

Query: 176 TEGGTK 181
            E   +
Sbjct: 470 LESNPR 475


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 126/336 (37%), Positives = 190/336 (56%), Gaps = 32/336 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++    VH+ ++  G     +V ++LVDMY K G  D +  VF+KM  K+ +S ++L+ G
Sbjct: 357 MRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTG 416

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G +E  +R+F EM       D      VL ACA L  L  GK+VH  +++      
Sbjct: 417 CVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSS 476

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + ++++LV +YAKCGC++ A+++F  M ++++ITW ++I G+AQNGRG +          
Sbjct: 477 LSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRD---------- 526

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
                             H GL++ GR +F SM + Y IKP  EHY CM+DLLGR+G L 
Sbjct: 527 ------------------HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLM 568

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+ L+     + D+++W+ LL AC    N  + ER A  + EL+P   + YVLL N+Y 
Sbjct: 569 EAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYS 628

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G+W +A K R LMK  GV K PG SWIE +SK++
Sbjct: 629 AAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVH 664



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 140/259 (54%), Gaps = 6/259 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH  ++  G   NV V S+LVDMY KCG +  + R+ + M   + VS ++++ G  +
Sbjct: 259 GAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVR 318

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + +FR M     +ID F++  VL   + +  +R    VH   ++       ++
Sbjct: 319 QGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLV 378

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +ALVD+YAK G  D+A  +F +M  +++I+W S+++G   NG  EEALR+F +M   G 
Sbjct: 379 NNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGI 438

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            PD +    VLSAC+ + +++ G++  A+  K   +   +   N +V +  + G +E+A 
Sbjct: 439 HPDQIVIAAVLSACAELTVLEFGKQVHANFLKS-GLGSSLSVDNSLVSMYAKCGCIEDAN 497

Query: 241 TLIENADCRHDSSLWEVLL 259
            + ++ + + D   W  L+
Sbjct: 498 KVFDSMEIQ-DVITWTALI 515



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 144/294 (48%), Gaps = 17/294 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQ 60
           L++GK++HA  I      N  V + LVDMY KC  + E+  +F+    K+N V  +A++ 
Sbjct: 154 LEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVT 213

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q GD    I  FR+M     E + F+F  +L AC  ++A   G +VH   +R     
Sbjct: 214 GYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGA 273

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V + SALVD+Y+KCG +  A ++   M V + ++WNSMI G  + G GEEAL +F  M 
Sbjct: 274 NVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMH 333

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGR 232
               K D  ++  VL+ C    +  R      S+     +K   E Y    N +VD+  +
Sbjct: 334 LRHMKIDEFTYPSVLN-CFSFVMDMRNAMSVHSLI----VKTGFEAYKLVNNALVDMYAK 388

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV--AKKIMELKPD 284
            G  + A  + E    + D   W  L+  C    +   A R+    +IM + PD
Sbjct: 389 RGYFDYAFDVFEKMTDK-DVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPD 441



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 148/307 (48%), Gaps = 22/307 (7%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EE 80
           ++++  Y   G ++E+ ++F +   ++ ++ S+L+ GYC+ G     + +F EM    E 
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
            + F++G VLR C+    L  GK++H   I+     +  + + LVD+YAKC C+  A  +
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 141 FLQMP-VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           F   P  RN + W +M++G++QNG G +A+  F DM   G + +  +F  +L+AC  +  
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
              G +    + +       +   + +VD+  + G L  A  ++E  +   D   W  ++
Sbjct: 256 CGFGAQVHGCIVRS-GFGANVFVGSALVDMYSKCGDLSNARRMLETMEV-DDPVSWNSMI 313

Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD--------NVYRAVGRWNDAFKIRTL 311
             C       V + + ++ + L    HL ++ +D        N +  V    +A  + +L
Sbjct: 314 VGC-------VRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSL 366

Query: 312 MKYSGVK 318
           +  +G +
Sbjct: 367 IVKTGFE 373



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 32/174 (18%)

Query: 129 AKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE---------------------- 166
           +KCG VD A ++F  MP R+  +WN+MI  +A +GR                        
Sbjct: 52  SKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLIS 111

Query: 167 ---------EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
                    EAL +F +M   G +P+  ++  VL  CS   L+++G++  A   K  +  
Sbjct: 112 GYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKT-QFD 170

Query: 218 PKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
                   +VD+  +   + EAE L E A  + +  LW  ++   +   + H A
Sbjct: 171 SNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKA 224


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 207/335 (61%), Gaps = 6/335 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+ +I L    +V V SSL+DMY K G + E+  VF+ + +++ VS +A++ GY Q
Sbjct: 384 GRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQ 443

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + +FR ++    + +  ++  VL A +GLAAL LGK+VH   +R      V++
Sbjct: 444 LGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVL 503

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGG 179
           +++L+D+Y+KCG + ++ +IF  M  R +I+WN+M+ G++++G G E L++F  M  E  
Sbjct: 504 QNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETK 563

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEE 238
            KPD V+ + VLS CSH GL D+G   F  M+  +  ++PK+EHY C+VDLLGR+G +EE
Sbjct: 564 VKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEE 623

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   I+       +++W  LLGAC    N  + E   ++++E++P    +YV+L N+Y +
Sbjct: 624 AFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYAS 683

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            GRW D   +R LM    V K PG+S IE +  L+
Sbjct: 684 AGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLH 718



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 132/260 (50%), Gaps = 26/260 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            ++G+ VHA +I      +V + + L+ +Y KC  + ++H VFD+M ++N VS +A++  
Sbjct: 259 FREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISA 318

Query: 62  YCQTGDFESVIRIFREMEEIDL-------------------------FSFGIVLRACAGL 96
           Y Q G     + +F    +I L                         F+F  VL +C   
Sbjct: 319 YSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSS 378

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
               LG+++H   I+ +    V + S+L+D+YAK G +  A  +F  +P R++++  ++I
Sbjct: 379 LGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAII 438

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216
           SG+AQ G  EEAL +F  +   G K ++V++ GVL+A S +  +D G++    + +   I
Sbjct: 439 SGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRS-EI 497

Query: 217 KPKIEHYNCMVDLLGRAGLL 236
              +   N ++D+  + G L
Sbjct: 498 PSFVVLQNSLIDMYSKCGNL 517



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 24/182 (13%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           ++  +L  C    A R G+ VH   I+      V + + L+ LY KC  +  AH +F +M
Sbjct: 245 NYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEM 304

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIF--------------DDMTEGG-------TKPD 183
           P RN+++W +MIS ++Q G   +AL +F              D +           T+P+
Sbjct: 305 PERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPN 364

Query: 184 HVSFIGVLSAC-SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
             +F  VL++C S +G I  GR+   S+  +   +  +   + ++D+  + G + EA T+
Sbjct: 365 EFTFATVLTSCTSSLGFI-LGRQ-IHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTV 422

Query: 243 IE 244
            E
Sbjct: 423 FE 424



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 26/172 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+VH  V+   +   VV+++SL+DMY KCG +  S R+FD M ++  +S +A+L G
Sbjct: 482 LDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVG 541

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACA-------GLAA---LRLGK-EV 105
           Y + G+   V+++F  M E      D  +   VL  C+       GL     +  GK EV
Sbjct: 542 YSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEV 601

Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
             + +   GC        +VDL  + G V+ A +   +MP       W S++
Sbjct: 602 EPK-MEHYGC--------VVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLL 644


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 126/338 (37%), Positives = 199/338 (58%), Gaps = 8/338 (2%)

Query: 2   LKQG---KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD-KMLKKNSVSSSA 57
           LK G   + +H+ V+  G    V V ++L DMY K   +D + RV        N VS+++
Sbjct: 234 LKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATS 293

Query: 58  LLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           L+ GY +T   E  + +F E+     E + F+F  +++ CA  A L  G ++H + I+ S
Sbjct: 294 LIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTS 353

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D  + S L+D+Y KCG +  + Q+F ++     I WN+ I+  AQ+G G EA+R FD
Sbjct: 354 LISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFD 413

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            MT  G +P+H++F+ +L+ACSH GL+D G K+F SM   + I+PK EHY+C++D+ GRA
Sbjct: 414 RMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRA 473

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           G L+EAE  I     + ++  W  LLGAC    N  + E  A  +M+L+PD    +V L 
Sbjct: 474 GRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLS 533

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
            +Y ++G+W D   +R LM+ + +KK+PG SW+++N K
Sbjct: 534 GIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKK 571



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 120/251 (47%), Gaps = 11/251 (4%)

Query: 2   LKQGKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L+ G+ +HA+++  G    +  + + L+ MY  C  V  + R+FD M + N VS + L+ 
Sbjct: 33  LRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVS 92

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G  Q       +  F  M    L    F+     RA A LAA   G ++HC  +R     
Sbjct: 93  GLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDA 152

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM- 175
           ++ + S L D+Y+K G +  A ++F QMP ++ + W +MI G+A+NG  E A+  F DM 
Sbjct: 153 ELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMR 212

Query: 176 TEGGTKPDHVSFIGVLSACSHM--GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            EG    D      VLSA   +  G + R      S   +   + ++   N + D+  +A
Sbjct: 213 REGLVGADQHVLCSVLSASGGLKDGWLARA---IHSCVMKSGFEQEVAVRNALTDMYAKA 269

Query: 234 GLLEEAETLIE 244
             ++ A  +++
Sbjct: 270 ADMDNAARVVK 280


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 204/368 (55%), Gaps = 36/368 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  +H  V  +G   +V V SSL+DMY KCG   +   +FD +L+KN VS +A++ G
Sbjct: 332 LQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGG 391

Query: 62  YCQTG-------------------------------DFESVIRIFREM----EEIDLFSF 86
           Y   G                                F+ +  +F EM    E  +  +F
Sbjct: 392 YSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTF 451

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             +L ACA  A+L  GK +H + ++     D  + +AL D+YAK G ++ + ++F +MP 
Sbjct: 452 SSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPK 511

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT-KPDHVSFIGVLSACSHMGLIDRGRK 205
           +N ++W +MI G A++G  EE+L +F++M +  +  P+ V F+ VL ACSH GL+D+G  
Sbjct: 512 KNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLW 571

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +F SM   Y +KPK  H+ C+VD+L RAG L EAE  I +   + +++ W  LL  C T+
Sbjct: 572 YFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTY 631

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           +N  +AERVA K+ E+       YVLL N+Y + GRW D  K+R LMK  G+KK  G SW
Sbjct: 632 KNEELAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSW 691

Query: 326 IEANSKLN 333
           +E   +++
Sbjct: 692 VEIRDRVH 699



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 139/323 (43%), Gaps = 72/323 (22%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-------------- 50
           G  V   ++  G   ++ V +SL+ +  + G +  +  VFD+M +K              
Sbjct: 203 GMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVE 262

Query: 51  -----------------NSVSSSALLQGYCQTGDFESVIRIF-REMEE---IDLFSFGIV 89
                            N VS SA++  YCQ+G  E  +R+F R ++E    ++  F  +
Sbjct: 263 MDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSI 322

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L A A + AL+ G  +H    +    KDV + S+L+D+Y KCG       +F  +  +N+
Sbjct: 323 LSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNM 382

Query: 150 ITWNSMISGFAQNGRGEEA-------------------------------LRIFDDMTEG 178
           ++WN+M+ G++ NG  EEA                                 +F++M   
Sbjct: 383 VSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILL 442

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLL 236
           G  P+  +F  +L AC+    +D+G+     + K   +  + + Y    + D+  ++G +
Sbjct: 443 GEIPNKSTFSSLLCACASTASLDKGKNLHGKIVK---LGIQCDTYVGTALTDMYAKSGDI 499

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           E ++ +      +++ S W  ++
Sbjct: 500 ESSKKVFNRMPKKNEVS-WTAMI 521



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 140/299 (46%), Gaps = 41/299 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N +  ++L+  + K G V ES   F++   +N VS +A + GY Q G     +++F ++ 
Sbjct: 117 NEISWTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLL 176

Query: 80  EIDL----FSFGIVLRACAGLAALRLGK-----------------------------EVH 106
           E ++     +F  V+RACA L    LG                              E+H
Sbjct: 177 ESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIH 236

Query: 107 C--QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
              +   R   KDV+  +A++DLY +   +  A +IF +MP RN ++W++MI+ + Q+G 
Sbjct: 237 LAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGY 296

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
            EE+LR+F  M + G KP+   F  +LSA + +  +  G      +TK    +  +   +
Sbjct: 297 PEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTK-IGFEKDVFVSS 355

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283
            ++D+  + G  ++   L +    ++  S W  ++G  +   N H+ E  AK +  + P
Sbjct: 356 SLIDMYCKCGETKDGRFLFDTILEKNMVS-WNAMVGGYSL--NGHMEE--AKYLFNIMP 409



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 31/113 (27%)

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF----------------- 159
           D+++ + ++    + G +D A ++F +MP  N I+W ++ISGF                 
Sbjct: 86  DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNP 145

Query: 160 --------------AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
                          QNG   EA+++F  + E   KP+ V+F  V+ AC+++G
Sbjct: 146 FQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLG 198


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 126/337 (37%), Positives = 203/337 (60%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC-GLVDESHRVFDKMLKKNSVSSSALLQ 60
           L  GK VH  ++  G   ++ V++++V MY  C G ++ + ++FD+M K + V+ +A++ 
Sbjct: 125 LNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIG 184

Query: 61  GYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY + G     + +FR+M+      D  +   VL AC  L AL LGK +     +    K
Sbjct: 185 GYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLK 244

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V + +ALVD++AKCG VD A  +F  M  R +++W S+I G A +GRG EA+ +F++M 
Sbjct: 245 TVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMK 304

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P+ ++FIG+LSACSH GL++RGR++F+ MT+++ I PKIEHY CMVDLL RAGL+
Sbjct: 305 ASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLV 364

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EA   +E      +  +W  L+ AC       + E ++K+++  +P    +YVLL N+Y
Sbjct: 365 TEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIY 424

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             +  W    KIR  M   G++K+PG + IE +++++
Sbjct: 425 GKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIH 461



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 133/274 (48%), Gaps = 22/274 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD---------ESHRVFDKMLKKNS 52
           L +  ++H  +I LG   N +V +           +          E  RV+D  L    
Sbjct: 20  LPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYDAFL---- 75

Query: 53  VSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHC 107
              S +++ Y ++   +     +  +        + ++F  VL+ACAGL  L LGK VH 
Sbjct: 76  --FSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHG 133

Query: 108 QYIRRSGCKDVIIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
             ++     D+ +++ +V +Y  C G ++FA ++F +MP  + +TW +MI G+A+ G+  
Sbjct: 134 SLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSA 193

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
            A+ +F  M   G  PD V+ + VLSAC+ +G ++ G K   S  ++ R+   +E  N +
Sbjct: 194 GAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELG-KWIESYIEKERVLKTVELSNAL 252

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           VD+  + G +++A  L  N   R   S   V++G
Sbjct: 253 VDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVG 286


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/329 (37%), Positives = 204/329 (62%), Gaps = 9/329 (2%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVD--ESHRVFDKMLKKNSVSSSALLQGYCQ 64
            +HA V+  GL G+  V ++++D Y K G  D   + +VFD M +K+ VS ++++  Y Q
Sbjct: 214 SLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQ 272

Query: 65  TGDFESVIRIFREMEEI------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            G     + ++R+M  +      +  +   +L ACA    ++ GK +H Q +R    ++V
Sbjct: 273 NGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENV 332

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +++VD+Y+KCG V+ A + F ++  +N+++W++MI+G+  +G G+EAL IF++M   
Sbjct: 333 YVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRS 392

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  P++++FI VL+ACSH GL+D+GR  + +M K + I+P +EHY CMVDLLGRAG L+E
Sbjct: 393 GQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDE 452

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A  LI+    + D+++W  LL AC   +N  +AE  AK++ EL       YVLL N+Y  
Sbjct: 453 AYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAE 512

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            G W D  ++R L+K  G++K PG S +E
Sbjct: 513 AGMWKDVERMRVLVKTRGIEKPPGYSSVE 541



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK +H +V+ +GL  NV V +S+VDMY KCG V+ + + F K+ +KN +S SA++ G
Sbjct: 313 IQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITG 372

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  + IF EM    +  +  +F  VL AC+    L  G+  +    +R G + 
Sbjct: 373 YGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEP 432

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            +     +VDL  + GC+D A+ +  +M V+ +   W +++S 
Sbjct: 433 GVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSA 475



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 12/211 (5%)

Query: 5   GKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+++H   I  GL   +    S+L+ MY  C    ++ + FD++   N V  +A+  GY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 64  QTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +       + +FR++        +D  +  +   A A +    +   +H   ++     D
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 118 VIIESALVDLYAKCGCVDF--AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             + + ++D YAK G  D   A ++F  M  +++++WNSMI+ +AQNG   +AL ++  M
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGLYRKM 286

Query: 176 --TEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
               G  K + V+   +L AC+H G I  G+
Sbjct: 287 LNVSGSIKCNAVTLSAILLACAHAGTIQTGK 317


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 205/335 (61%), Gaps = 6/335 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H+ +I L    +V V SSL+DMY K G + E+  +F  + +++ VS +A++ GY Q
Sbjct: 178 GRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQ 237

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + +FR ++    + +  ++  VL A +GLAAL  GK+VH   +R      V++
Sbjct: 238 LGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVL 297

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT-EGG 179
           +++L+D+Y+KCG + +A +IF  +  R +I+WN+M+ G++++G G E L +F+ M  E  
Sbjct: 298 QNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENK 357

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEE 238
            KPD V+ + VLS CSH GL D+G   F  MT  +  ++P  +HY C+VD+LGRAG +E 
Sbjct: 358 VKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEA 417

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   ++       +++W  LLGAC+   N  + E V  ++++++P+   +YV+L N+Y +
Sbjct: 418 AFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYAS 477

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            GRW D   +R LM    V K PG+SWIE +  L+
Sbjct: 478 AGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLH 512



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 143/268 (53%), Gaps = 18/268 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+ VHA +I       V + + L+  Y KC  + ++  VFD M ++N VS +A++  
Sbjct: 74  IREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISA 133

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F +M     E + F+F  VL +C G +   LG+++H   I+ +    
Sbjct: 134 YSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAH 193

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S+L+D+YAK G +  A  IF  +P R++++  ++ISG+AQ G  EEAL +F  +  
Sbjct: 194 VYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQR 253

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRA 233
            G + ++V++  VL+A S +  +D G++        + ++ ++  Y    N ++D+  + 
Sbjct: 254 EGMQSNYVTYTSVLTALSGLAALDHGKQ-----VHNHLLRSEVPSYVVLQNSLIDMYSKC 308

Query: 234 GLLEEAETLIENADCRHDSSL--WEVLL 259
           G L  A  +    D  H+ ++  W  +L
Sbjct: 309 GNLTYARRIF---DTLHERTVISWNAML 333



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 1/159 (0%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  VL  C    A+R G+ VH   I+      V + + L+  Y KC  +  A  +F  MP
Sbjct: 61  YNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMP 120

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN+++W +MIS ++Q G   +AL +F  M   GT+P+  +F  VL++C        GR+
Sbjct: 121 ERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQ 180

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
             + + K    +  +   + ++D+  + G + EA  + +
Sbjct: 181 IHSHIIK-LNYEAHVYVGSSLLDMYAKDGKIHEARGIFQ 218


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 204/330 (61%), Gaps = 5/330 (1%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+HA+VI      +  V ++L+D + K G + ++ +VF+ +  K+ ++ SA+L GY Q G
Sbjct: 423 EIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAG 482

Query: 67  DFESVIRIF----REMEEIDLFSFGIVLRAC-AGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           + E   +IF    RE  + + F+F  ++ AC A  A++  GK+ H   I+      + + 
Sbjct: 483 ETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVS 542

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           S+LV LYAK G ++ AH+IF +   R+L++WNSMISG+AQ+G+ ++AL +F++M +   +
Sbjct: 543 SSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLE 602

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D ++FIGV+SAC+H GL+ +G+ +F  M  ++ I P +EHY+CM+DL  RAG+L +A  
Sbjct: 603 VDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMD 662

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           +I        +++W ++L A    RN  + +  A+KI+ L+P    +YVLL N+Y A G 
Sbjct: 663 IINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGN 722

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           W++   +R LM    VKK PG SWIE  +K
Sbjct: 723 WHEKVNVRKLMDKRRVKKEPGYSWIEVKNK 752



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 109/197 (55%), Gaps = 4/197 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH + +  GL  ++ V +SLVDMY K G V +  RVFD+M  ++ VS ++LL GY  
Sbjct: 121 GEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSW 180

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               + V  +F  M+      D ++   V+ A A   A+ +G ++H   ++     + ++
Sbjct: 181 NRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLV 240

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L+ + +K G +  A  +F  M  ++ ++WNSMI+G   NG+  EA   F++M   G 
Sbjct: 241 CNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGA 300

Query: 181 KPDHVSFIGVLSACSHM 197
           KP H +F  V+ +C+ +
Sbjct: 301 KPTHATFASVIKSCASL 317



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 107/193 (55%), Gaps = 5/193 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++HA V+ LG     +V +SL+ M  K G++ ++  VFD M  K+SVS ++++ G+  
Sbjct: 222 GMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVI 281

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G        F  M+    +    +F  V+++CA L  L L + +HC+ ++     +  +
Sbjct: 282 NGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNV 341

Query: 121 ESALVDLYAKCGCVDFAHQIF-LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
            +AL+    KC  +D A  +F L   V+++++W +MISG+ QNG  ++A+ +F  M   G
Sbjct: 342 LTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREG 401

Query: 180 TKPDHVSFIGVLS 192
            KP+H ++  +L+
Sbjct: 402 VKPNHFTYSTILT 414



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 133/273 (48%), Gaps = 24/273 (8%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHR----VFDKMLKKNSVSSSALLQGYCQTGDFESVIRI 74
            N +++S +V +  +  L D   R    +FD+   ++    + LL  Y +    +  + +
Sbjct: 30  ANPLLQSHVVALNARTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHL 89

Query: 75  F----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
           F    R     D ++   VL  CAG     +G++VHCQ ++      + + ++LVD+Y K
Sbjct: 90  FVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTK 149

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
            G V    ++F +M  R++++WNS+++G++ N   ++   +F  M   G +PD+ +   V
Sbjct: 150 TGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTV 209

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADC 248
           ++A ++ G +  G +  A + K   +  + E    N ++ +L ++G+L +A  + +N + 
Sbjct: 210 IAALANQGAVAIGMQIHALVVK---LGFETERLVCNSLISMLSKSGMLRDARVVFDNMEN 266

Query: 249 RHDSSLWEVLLG----------ACTTFRNAHVA 271
           + DS  W  ++           A  TF N  +A
Sbjct: 267 K-DSVSWNSMIAGHVINGQDLEAFETFNNMQLA 298



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 5/149 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QGK+ HA  I L L   + V SSLV +Y K G ++ +H +F +  +++ VS ++++ G
Sbjct: 520 VEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISG 579

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  + +F EM+    E+D  +F  V+ ACA    +  G+      I       
Sbjct: 580 YAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINP 639

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMP 145
            +   S ++DLY++ G +  A  I   MP
Sbjct: 640 TMEHYSCMIDLYSRAGMLGKAMDIINGMP 668


>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 753

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 195/336 (58%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H+  I LGL   V V + LVD Y KC   + + + F+ + + N  S SAL+ G
Sbjct: 297 LYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAG 356

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           YCQ+G F+  + +F+ +      ++ F +  + +AC+ ++ L  G ++H   I++     
Sbjct: 357 YCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHADAIKKGLVAY 416

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  ESA++ +Y+KCG VD+AHQ FL +   + + W ++I   A +G+  EALR+F +M  
Sbjct: 417 LSGESAMITMYSKCGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQG 476

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+ V+FIG+L+ACSH GL+  G++   SMT +Y + P I+HYNCM+D+  RAGLL 
Sbjct: 477 SGVRPNVVTFIGLLNACSHSGLVKEGKQFLDSMTDKYGVNPTIDHYNCMIDIYSRAGLLL 536

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  +I +     D   W+ LLG C + RN  +    A  I  L P    +YV++ N+Y 
Sbjct: 537 EALEVIRSMPFEPDVMSWKSLLGGCWSRRNLEIGMIAADNIFRLDPLDSATYVIMFNLYA 596

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W++A + R +M    ++K    SWI    K++
Sbjct: 597 LAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVH 632



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 142/281 (50%), Gaps = 6/281 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H+++I +    ++ +E+ + +MY KCG +D +    +KM +K++V+ + L+ G
Sbjct: 196 LDLGKQIHSQLIRIEFAADISIETLISNMYVKCGWLDGAEVATNKMTRKSAVACTGLMVG 255

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q       + +F +M     E+D F F I+L+ACA L  L  GK++H   I+     +
Sbjct: 256 YTQAARNRDALLLFSKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESE 315

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + LVD Y KC   + A Q F  +   N  +W+++I+G+ Q+G+ + AL +F  +  
Sbjct: 316 VSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGKFDRALEVFKTIRS 375

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G   +   +  +  ACS +  +  G +  A   K+  +   +   + M+ +  + G ++
Sbjct: 376 KGVLLNSFIYNNIFQACSAVSDLICGAQIHADAIKKGLV-AYLSGESAMITMYSKCGKVD 434

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
            A       D + D+  W  ++ A      A  A R+ K++
Sbjct: 435 YAHQAFLAID-KPDTVAWTAIICAHAYHGKASEALRLFKEM 474



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 124/267 (46%), Gaps = 6/267 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK  H ++  +    N  +++ ++ MY  C     + R FDK++ ++  S + ++  
Sbjct: 96  LSDGKLFHNRLQRMA-NSNKFIDNCILQMYCDCKSFTAAERFFDKIVDRDLSSWATIISA 154

Query: 62  YCQTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  +  + +F  M ++ +      F  ++ + A  + L LGK++H Q IR     D
Sbjct: 155 YTEEGRIDEAVGLFLRMLDLGIIPNFSIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAAD 214

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + IE+ + ++Y KCG +D A     +M  ++ +    ++ G+ Q  R  +AL +F  M  
Sbjct: 215 ISIETLISNMYVKCGWLDGAEVATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMIS 274

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G + D   F  +L AC+ +G +  G K   S   +  ++ ++     +VD   +    E
Sbjct: 275 EGVELDGFVFSIILKACAALGDLYTG-KQIHSYCIKLGLESEVSVGTPLVDFYVKCARFE 333

Query: 238 EAETLIENADCRHDSSLWEVLLGACTT 264
            A    E+    +D S   ++ G C +
Sbjct: 334 AARQAFESIHEPNDFSWSALIAGYCQS 360


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 129/331 (38%), Positives = 195/331 (58%), Gaps = 5/331 (1%)

Query: 8    VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
            VH  V+  G  G++ V ++L+D Y KCG    S +VFD M +K+ +S ++++  Y Q+G 
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 2205

Query: 68   FESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
                + +F  M        +  +   VL ACA   ALR GK +H Q I+     +V + +
Sbjct: 2206 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 2265

Query: 123  ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            +++D+Y KCG V+ A + F +M  +N+ +W +M++G+  +GR +EAL IF  M   G KP
Sbjct: 2266 SIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 2325

Query: 183  DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
            ++++F+ VL+ACSH GL++ G   F +M  +Y I+P IEHY CMVDL GRAG L EA  L
Sbjct: 2326 NYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNL 2385

Query: 243  IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302
            I+    + D  +W  LLGAC   +N  + E  A+K+ EL PD    YVLL N+Y   GRW
Sbjct: 2386 IKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRW 2445

Query: 303  NDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             D  ++R LMK   + K PG S +E   +++
Sbjct: 2446 ADVERMRMLMKNRQLVKPPGFSLVELKGRVH 2476



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 144/270 (53%), Gaps = 35/270 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGL---------------------------- 36
           GK VH  +I  G  G+V V+++L+D Y KCG                             
Sbjct: 144 GKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLIS 203

Query: 37  ---VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF----SFGIV 89
              + E+ R+FD++  KN VS +A++ GY +    E  + +F+ M+  ++F    +   +
Sbjct: 204 CGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSL 263

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           ++AC  +  L LG+ +H   I+      V + +AL+D+Y+KCG +  A ++F  MP ++L
Sbjct: 264 IKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSL 323

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
            TWNSMI+    +G G+EAL +F +M     KPD ++FIGVL AC H+  +  G  +F  
Sbjct: 324 PTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTR 383

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           MT+ Y I P  EHY CM +L  R+  L+EA
Sbjct: 384 MTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 136/299 (45%), Gaps = 45/299 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K  +++HAK+I  GL  + ++   L+ +Y   G +  +  +F ++    + + + +++ 
Sbjct: 40  FKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA 99

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  + +++ M       D F+F  V++AC    ++ LGK VH   I+     D
Sbjct: 100 NTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGD 159

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS----------------------- 154
           V +++ L+D Y KCG   FA ++F +M VRN+++W +                       
Sbjct: 160 VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219

Query: 155 --------MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
                   MI+G+ +N + EEAL +F  M      P+  + + ++ AC+ MG++  GR  
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG- 278

Query: 207 FASMTKEYRIKPKIE----HYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
                 +Y IK  IE        ++D+  + G +++A  + E    R     W  ++ +
Sbjct: 279 ----IHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITS 332



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 114/216 (52%), Gaps = 13/216 (6%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L  G+  H +    G   ++ V S+L+DMY KCG + ++  +FD++  +N VS ++++ G
Sbjct: 2031 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 2090

Query: 62   YCQTGDFESVIRIFREMEE------------IDLFSFGIVLRACAGLAALRLGKEVHCQY 109
            Y Q    ++ + +F++  E            +D      VL AC+ ++   + + VH   
Sbjct: 2091 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 2150

Query: 110  IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
            +++     + + + L+D YAKCG    + ++F  M  ++ I+WNSMI+ +AQ+G   EAL
Sbjct: 2151 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEAL 2210

Query: 170  RIFDDMTEG-GTKPDHVSFIGVLSACSHMGLIDRGR 204
             +F  M    G + + V+   VL AC+H G +  G+
Sbjct: 2211 EVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGK 2246



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 110/213 (51%), Gaps = 18/213 (8%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYG-KCGLVDESHRV--FDKMLKKNSVSS-SA 57
            L +   ++  V+    C + +  +S+  ++G   G  D S+    F K + K++V S ++
Sbjct: 1928 LSESPSIYVCVVNFYECFDGITYNSI--LFGVPSGREDHSNLATWFYKYVDKSNVHSWNS 1985

Query: 58   LLQGYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRS 113
            ++    + GD    +R F  + ++ L     SF   +++C+ L  L  G+  H Q     
Sbjct: 1986 VIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFG 2045

Query: 114  GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
               D+ + SAL+D+Y+KCG +  A  +F ++P+RN+++W SMI+G+ QN + + AL +F 
Sbjct: 2046 FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFK 2105

Query: 174  DMTE-------GGTKP-DHVSFIGVLSACSHMG 198
            D  E       G   P D V  + VLSACS + 
Sbjct: 2106 DFLEEETEVEDGNNVPLDSVVMVSVLSACSRVS 2138



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 22/169 (13%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L+ GK +H +VI + L  NV V +S++DMY KCG V+ + + FD+M +KN  S +A++ G
Sbjct: 2242 LRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAG 2301

Query: 62   YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLG----KEVHCQY---- 109
            Y   G  +  + IF +M     + +  +F  VL AC+    +  G      +  +Y    
Sbjct: 2302 YGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEP 2361

Query: 110  -IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
             I   GC        +VDL+ + GC++ A+ +  +M ++ + + W S++
Sbjct: 2362 GIEHYGC--------MVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLL 2402



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 5/191 (2%)

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
            +L+ C     LR   ++H + IR     D ++   L+ LY+  G + +A  +F Q+   
Sbjct: 32  FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
              TWN +I     NG  E+AL ++ +M   G   D  +F  V+ AC++   ID G+   
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
            S+ K Y     +   N ++D   + G    A  + E    R+  S W  ++    +  +
Sbjct: 149 GSLIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVS-WTTVISGLISCGD 206

Query: 268 AHVAERVAKKI 278
              A R+  +I
Sbjct: 207 LQEARRIFDEI 217



 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 8/115 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H   I   +   V + ++L+DMY KCG + ++  VF+ M +K+  + ++++  
Sbjct: 273 LTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITS 332

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
               G  +  + +F EME +    D  +F  VL AC  +  ++ G    C Y  R
Sbjct: 333 LGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG----CAYFTR 383



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 148  NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-KH 206
            N+ +WNS+I+  A+ G   EALR F  + + G  P   SF   + +CS +  +  GR  H
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 2038

Query: 207  FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              +    +  +  +   + ++D+  + G L++A  L +    R+  S   ++ G
Sbjct: 2039 QQAFV--FGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 2090


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 200/336 (59%), Gaps = 12/336 (3%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +EVH  +I  G   +VV+ ++L+  Y   GL++ +H+VF++M  ++ VS ++++  YCQT
Sbjct: 521 REVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQT 580

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  E  ++++ +M       D F+   +L +CA + AL +G ++H     R   +++ + 
Sbjct: 581 GLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVG 640

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +AL+D+YAKCG +  A  IF  MP R++ TWNSMI G+  +GRG+EA+  F  M   G +
Sbjct: 641 NALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVR 700

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+ ++F+G+L  CSH GL+  G ++F  M+ E+ +KP I+HY CMVDL GRAG L+EA  
Sbjct: 701 PNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALE 760

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP----DCHLSYVLLDNVYR 297
           +I ++  +HD  LW  LLG+C   RN  + E   + +++L      DC    VLL  +Y 
Sbjct: 761 VIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDC----VLLSGIYA 816

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
                    ++R L++  G+K  PG SWIE   +++
Sbjct: 817 EAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVH 852



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H       L  N+ V ++L+DMY KCG +  +  +F+ M K++  + ++++ G
Sbjct: 618 LHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVG 677

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKE----VHCQYIRRS 113
           Y   G  +  I  F  M       +  +F  +L  C+    ++ G +    +  ++  + 
Sbjct: 678 YGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKP 737

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           G K       +VDL+ + G +  A ++    P + + + W +++
Sbjct: 738 GIKHY---GCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLL 778


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 202/367 (55%), Gaps = 36/367 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VH+  +  G   N  V ++L+ +YGK   +    ++FD+M  K++VS ++ +  
Sbjct: 434 LETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSA 493

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACA--------------------------- 94
             Q   F+    +F  M   D+ S+  ++ ACA                           
Sbjct: 494 LVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPIL 553

Query: 95  --------GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
                    L A +LG+++H   I+      +++ +ALV +Y KC   D + ++F  M  
Sbjct: 554 TILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD-SLKVFDSMEE 612

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R++ TWN++I+G+AQ+G G EA+R++  M   G  P+ V+F+G+L ACSH GL+D G + 
Sbjct: 613 RDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQF 672

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SM+ +Y + P +EHY CMVDLLGRAG ++ AE  I +     DS +W  LLGAC   +
Sbjct: 673 FKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHK 732

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  +  R A+K+  ++P    +YV+L N+Y + G W++  K+R LMK  GV K PG SW+
Sbjct: 733 NVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWM 792

Query: 327 EANSKLN 333
           +  +K++
Sbjct: 793 QIKNKMH 799



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 16/223 (7%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFE----SVIRIF 75
           NVV  ++++  Y +  +VDE+  +F++M  +N++S + ++ GY + G  E    S+  + 
Sbjct: 351 NVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALH 410

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
           R+     L S      AC+ + AL  GK+VH   + ++GC+ +  + +AL+ LY K   +
Sbjct: 411 RKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAV-KAGCQFNSYVCNALITLYGKYRSI 469

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
               QIF +M V++ +++NS +S   QN   +EA  +F++M      PD VS+  ++SAC
Sbjct: 470 GSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNM----PSPDVVSWTTIISAC 525

Query: 195 SHMGLIDRGRKHFASMTKEYRIK-PKIEHYNCMVDLLGRAGLL 236
           +     +   + F SM  E  +  P I     +  LLG +G L
Sbjct: 526 AQADQGNEAVEIFRSMLHERELPNPPI-----LTILLGLSGNL 563



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 130/302 (43%), Gaps = 13/302 (4%)

Query: 24  ESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL 83
           +S+ +   G+ G + E+  VFD M  ++ ++ ++++  YC  G  ++   +   +   +L
Sbjct: 36  QSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNL 95

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
            +  I+L   A    +R  + V        G ++ +  +A+V  Y + G +  A ++F  
Sbjct: 96  RTGTILLSGYARAGRVRDARRV----FDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDA 151

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP R++ +WN+M++G+  +   EEA  +F+ M E       V   G +    H    D  
Sbjct: 152 MPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMF 211

Query: 204 RKHF-ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           R      MT E   +P +      V  LG+ G+LE    L+       D  +   +L   
Sbjct: 212 RTMLCEGMTPE---QPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGY 268

Query: 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
           T  ++ ++ +   K    +      ++  +       GR +DAF +    +   +K +P 
Sbjct: 269 T--KDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAV---YQRDPLKSVPS 323

Query: 323 KS 324
           ++
Sbjct: 324 RT 325



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 131/320 (40%), Gaps = 38/320 (11%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGK-CGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           + +H  V   G   +VVV +++++ Y K   ++D + + F+ M  +N  + S ++    Q
Sbjct: 243 ESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQ 302

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
            G  +    +++      + S   +L   A    +   K +  Q        +V+  +A+
Sbjct: 303 AGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHE----PNVVSWNAM 358

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +  Y +   VD A  +F +MP RN I+W  MI+G+A+NGR E+AL     +   G  P  
Sbjct: 359 ITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSL 418

Query: 185 VSFIGVLSACSHMGLIDRGRK------------------HFASMTKEYRIKPKIEH---- 222
            S      ACS++  ++ G++                     ++  +YR    +      
Sbjct: 419 SSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDR 478

Query: 223 --------YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
                   YN  +  L +  L +EA  +  N     D   W  ++ AC      + A  +
Sbjct: 479 MTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPS-PDVVSWTTIISACAQADQGNEAVEI 537

Query: 275 AKKIMELK--PDCHLSYVLL 292
            + ++  +  P+  +  +LL
Sbjct: 538 FRSMLHERELPNPPILTILL 557



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 41/183 (22%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
           GN+   + L+  Y + G V ++ RVFD M  +N+V+ +A++  Y Q GD     ++F  M
Sbjct: 93  GNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAM 152

Query: 79  EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
              D+ S+  +L                                     Y     ++ A 
Sbjct: 153 PSRDVSSWNTMLTG-----------------------------------YCHSQLMEEAR 177

Query: 139 QIFLQMPVRNLITWNSMISGFA---QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            +F +MP RN ++W  MISG+    Q+GR   A  +F  M   G  P+  + + VLSA  
Sbjct: 178 NLFERMPERNGVSWTVMISGYVLIEQHGR---AWDMFRTMLCEGMTPEQPNLVSVLSAVR 234

Query: 196 HMG 198
           H+G
Sbjct: 235 HLG 237



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 124/286 (43%), Gaps = 49/286 (17%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  +++V  Y + G +  + ++FD M  ++  S + +L GYC +   E    +F  M 
Sbjct: 125 NTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMP 184

Query: 80  EIDLFSFGIVLRA------------------CAG-----------LAALR-LGKE----- 104
           E +  S+ +++                    C G           L+A+R LGK      
Sbjct: 185 ERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILES 244

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAK-CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           +H    +    +DV++ +A+++ Y K    +D A + F  M  RN  TW+++I+  +Q G
Sbjct: 245 IHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAG 304

Query: 164 RGEEALRIF--DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
           R ++A  ++  D +    + P   S   +L+  +  G ID  +  F  +      +P + 
Sbjct: 305 RIDDAFAVYQRDPLK---SVPSRTS---MLTGLARYGRIDDAKILFDQIH-----EPNVV 353

Query: 222 HYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
            +N M+    +  +++EAE L      R+  S   ++ G     R+
Sbjct: 354 SWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRS 399


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/337 (38%), Positives = 194/337 (57%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H  +I  G   NV V + L+D YGKCG V+ S  VFD+M ++NSVS S+L+  
Sbjct: 225 LGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAA 284

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  + E    +F    + D+    F    VL ACAGL+ +  G+ V    ++    ++
Sbjct: 285 YVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQN 344

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + SALVD+Y KCG +D A Q F  MP RNL++WN+++ G+A  G   +A+ + ++MT 
Sbjct: 345 IFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTS 404

Query: 178 G-GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P +VS I  LSACS  G +  G K F SM + Y ++P  EHY C+VDLLGRAG++
Sbjct: 405 AAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMV 464

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E A   I+        S+W  LLGAC       + +  A+K+ EL P    ++V+L N++
Sbjct: 465 ECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMF 524

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A GRW +   +R  MK  G+KK  G SWI  +S+++
Sbjct: 525 AATGRWEEVTVVRNEMKEVGIKKGAGFSWITVDSRIH 561



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 6/260 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA  +  GL  +V V  S+ DMY K G ++++++VFD+M  +N  + +A +     
Sbjct: 127 GKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVL 186

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  +  F E+  +    D  +F   L AC+    L  G ++H   IR    ++V +
Sbjct: 187 HGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSV 246

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L+D Y KCG V+ +  +F +M  RN ++W+S+I+ + QN   E+A  +F    +   
Sbjct: 247 SNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDI 306

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +P       VL AC+ +  I+ GR   A   K   ++  I   + +VD+ G+ G ++ AE
Sbjct: 307 EPTDFMVSSVLCACAGLSEIEFGRSVQALAVKAC-VEQNIFVASALVDMYGKCGSIDNAE 365

Query: 241 TLIENADCRHDSSLWEVLLG 260
               NA    +   W  LLG
Sbjct: 366 QAF-NAMPERNLVSWNALLG 384



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 136/263 (51%), Gaps = 9/263 (3%)

Query: 5   GKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+  HA+++ TL       + + LV+MY K   ++ +  + +    ++ V+ +AL+ G  
Sbjct: 25  GRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSV 84

Query: 64  QTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G F S +  F +M       + F+F  VL+A  GL     GK++H   ++     DV 
Sbjct: 85  QNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVF 144

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +  ++ D+Y+K G ++ A+++F +MP RNL TWN+ IS    +GR E+++  F ++   G
Sbjct: 145 VGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVG 204

Query: 180 TKPDHVSFIGVLSACS-HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            KPD ++F   L+ACS  +GL    + H   +   Y     +   N ++D  G+ G +E 
Sbjct: 205 GKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVS--NGLIDFYGKCGEVEC 262

Query: 239 AETLIENADCRHDSSLWEVLLGA 261
           +E + +    R+  S W  L+ A
Sbjct: 263 SEMVFDRMGERNSVS-WSSLIAA 284


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 197/366 (53%), Gaps = 39/366 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK VH  ++ +GL  ++ V +SL+ +YGKCG ++++ +VFD M  ++  S +ALL GY +
Sbjct: 153 GKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTK 212

Query: 65  TGDFESVIRIFREMEEIDLFSFGI------------------------------------ 88
           +G  ++ + IF  M   ++ S+                                      
Sbjct: 213 SGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIM 272

Query: 89  -VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF--LQMP 145
            VL ACA L+ L  G+++H    R     +  +  AL  +YAKCG +  A   F  L   
Sbjct: 273 SVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRN 332

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +NLI WN+MI+ +A  G G +A+  F +M + G +PD ++F G+LS CSH GL+D G K
Sbjct: 333 EKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLK 392

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +F  M+  Y I P++EHY C+ DLLGRAG L EA  L+         S+W  LL AC   
Sbjct: 393 YFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKH 452

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           RN  +AE  A+K+  L+P+   +YVLL N+Y   GRW +  K+R ++K  G KK PG SW
Sbjct: 453 RNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSW 512

Query: 326 IEANSK 331
           IE N K
Sbjct: 513 IEINGK 518



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 20/214 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD--------KMLKKNSV 53
           LK G +VHA ++  GL    +V S +V  Y   G +D S  VF+          + K+SV
Sbjct: 86  LKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGDYFTFPFVLKSSV 145

Query: 54  SSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
              ++  G C  G    ++RI  + +     S  I+   C  +     GK      IR  
Sbjct: 146 ELLSVWMGKCVHG---LILRIGLQFDLYVATSLIILYGKCGEIN--DAGKVFDNMTIR-- 198

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              DV   +AL+  Y K GC+D A  IF +MP RN+++W +MISG++Q+G  ++AL +FD
Sbjct: 199 ---DVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFD 255

Query: 174 DMT--EGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +M   + G +P+ V+ + VL AC+ +  ++RGR+
Sbjct: 256 EMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQ 289



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 80/166 (48%), Gaps = 10/166 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALL 59
           L++G+++H     +GL  N  V  +L  MY KCG + ++   FDK+ +  KN ++ + ++
Sbjct: 284 LERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMI 343

Query: 60  QGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
             Y   G     +  FREM +     D  +F  +L  C+    + +G + +  ++  +  
Sbjct: 344 TAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLK-YFNHMSTTYS 402

Query: 116 KDVIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            +  +E  + + DL  + G +  A ++  +MP+      W S+++ 
Sbjct: 403 INPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAA 448



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 95/253 (37%), Gaps = 47/253 (18%)

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           +   +++++         + S+  V +   GL  L+LG +VH   + R      ++ S +
Sbjct: 52  SATLQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKM 111

Query: 125 VDLYAKCGCVD------------FAHQIFLQMPVRNLITW-------------------- 152
           V  YA  G +D            F     L+  V  L  W                    
Sbjct: 112 VAFYASSGDIDSSVSVFNGIGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYV 171

Query: 153 -NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
             S+I  + + G   +A ++FD+M    T  D  S+  +L+  +  G ID     F  M 
Sbjct: 172 ATSLIILYGKCGEINDAGKVFDNM----TIRDVSSWNALLAGYTKSGCIDAALAIFERM- 226

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL---WEVLLGACTTFRNA 268
             +R    I  +  M+    ++GL ++A +L +    + DS +   W  ++         
Sbjct: 227 -PWR---NIVSWTTMISGYSQSGLAQQALSLFDEM-VKEDSGVRPNWVTIMSVLPACAQL 281

Query: 269 HVAERVAKKIMEL 281
              ER  ++I EL
Sbjct: 282 STLER-GRQIHEL 293


>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/334 (41%), Positives = 195/334 (58%), Gaps = 7/334 (2%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALL 59
           L  G+++H +V+  G L  + +V  SL+ +Y       +S  +F ++   K  V  +AL+
Sbjct: 627 LNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALI 686

Query: 60  QGYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            GY Q    E  ++ ++ M   ++     +F  VLRACAG+++L+ G+E+H         
Sbjct: 687 SGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFN 746

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN-LITWNSMISGFAQNGRGEEALRIFDD 174
            D +  S+L+D+YAKCG V  + Q+F +MP RN +I+WNSMI G A+NG  EEAL IF  
Sbjct: 747 MDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQ 806

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M +    PD V+F+GVLSACSH G +  GRK F  M   Y++ P+++H  CMVD+LGR G
Sbjct: 807 MEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVNNYKLLPRVDHLGCMVDILGRWG 866

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L EAE  I    C+ D  LW  LLGAC    +    +R A K+MELKP    SYVLL +
Sbjct: 867 FLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSS 926

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
           +Y     W+ A  +R  MK  GVKK+PG SWIE 
Sbjct: 927 IYAESENWSGAVSLRREMKLKGVKKLPGYSWIEP 960



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 116/208 (55%), Gaps = 4/208 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VHA+    GL  NV V S+LV+MY KC  +D + +VF+ + ++N V  +A+L G
Sbjct: 325 LNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGG 384

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  + V+  F    R   + D F+F  +  ACA L  L  G ++H   I+     +
Sbjct: 385 FAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASN 444

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALVD+YAK G +  A + F  M + + ++WN++I G+ Q    +EA  +F  M  
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVS 504

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G  PD VS   ++SAC+++  + RG++
Sbjct: 505 NGVLPDEVSLASIVSACANVQELKRGQQ 532



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 125/238 (52%), Gaps = 6/238 (2%)

Query: 26  SLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL-- 83
           ++V+ Y   G + ++ ++F ++   N V+ + ++ G+ + G  E  I  F E+++  L  
Sbjct: 248 TVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKA 307

Query: 84  --FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
              S G VL A A L+ L  G  VH Q  +     +V + SALV++YAKC  +D A Q+F
Sbjct: 308 TRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVF 367

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
             +  RN++ WN+M+ GFAQNG  +E +  F  M   G +PD  +F  + SAC+ +  ++
Sbjct: 368 NSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLN 427

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            G +    M K  +    +   N +VD+  ++G L+EA    E     HD+  W  ++
Sbjct: 428 FGGQLHTVMIKN-KFASNLFVANALVDMYAKSGALKEARKQFELMKI-HDNVSWNAII 483



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 128/242 (52%), Gaps = 9/242 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K +H+K + +G+    ++ + +VD+Y KCG VD + + F ++ KK+  + +++L  
Sbjct: 57  LSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSM 116

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G F +V++ F  M   ++    F+F +VL AC+GL  +  G++VHC   +      
Sbjct: 117 YLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFR 176

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
              +  L+D+YAKC  +  A  +F      + ++W ++I+G+ ++G   EA+++FD M  
Sbjct: 177 SFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQR 236

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD ++ + V++A   +G +   RK F  +       P +  +N M+    + G  E
Sbjct: 237 VGHAPDQITLVTVVNAYVALGRLADARKLFTQIP-----NPNVVAWNVMISGHAKRGFAE 291

Query: 238 EA 239
           EA
Sbjct: 292 EA 293



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 112/208 (53%), Gaps = 5/208 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H  +I      N+ V ++LVDMY K G + E+ + F+ M   ++VS +A++ G
Sbjct: 426 LNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVG 485

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    +    +FR M       D  S   ++ ACA +  L+ G++ HC  ++      
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTS 545

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               S+L+D+Y KCG V  A  +F  MP RN+++ N++I+G+   G  EEA+ +F ++  
Sbjct: 546 TCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQM 604

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G KP  V+F G+L  C    +++ GR+
Sbjct: 605 VGLKPTEVTFAGLLDGCDGAFMLNLGRQ 632



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 7/225 (3%)

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
           L AL   K +H + ++       ++ + +VDLY KCG VDFA + F ++  +++  WNS+
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEY 214
           +S +  +G     ++ F  M     +P+  +F  VLSACS +  ++ GR+ H       +
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGF 173

Query: 215 RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
             +   +    ++D+  +   L +A  + + A    D+  W  L+           A +V
Sbjct: 174 GFRSFCQ--GGLIDMYAKCRYLRDARLVFDGA-LNLDTVSWTALIAGYVRDGFPMEAVKV 230

Query: 275 AKKIMEL--KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
             ++  +   PD  ++ V + N Y A+GR  DA K+ T +    V
Sbjct: 231 FDRMQRVGHAPD-QITLVTVVNAYVALGRLADARKLFTQIPNPNV 274


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 201/336 (59%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++V    + LG      V +SL+ MY + G +D++ + FD + +KN +S + ++  
Sbjct: 392 LRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDA 451

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +  + E  + +F E+E+  +    F+F  +L   A +  +  G+++H + I+     +
Sbjct: 452 YAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLN 511

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ +Y++CG ++ A Q+F  M  RN+I+W S+I+GFA++G   +AL +F  M E
Sbjct: 512 QSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLE 571

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+ V++I VLSACSH+GL++ G KHF SM  E+ + P++EHY CMVD+LGR+G L 
Sbjct: 572 EGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLS 631

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I +   + D+ +W   LGAC    N  + +  AK I+E +P    +Y+LL N+Y 
Sbjct: 632 EAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYA 691

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +  +W++   IR  MK   + K  G SW+E  +K++
Sbjct: 692 STSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVH 727



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 167/313 (53%), Gaps = 13/313 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSALLQG 61
           G+++H++ I  GL  +  V   L++MY KC   G +  + ++FD++L  N  S +A++ G
Sbjct: 290 GQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITG 349

Query: 62  YCQTGDF-ESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q G + E  + +FR M    +    F+F   L+ACA LAALR+G++V    ++     
Sbjct: 350 YVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSS 409

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + ++L+ +YA+ G +D A + F  +  +NLI++N++I  +A+N   EEAL +F+++ 
Sbjct: 410 VNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE 469

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G      +F  +LS  + +G I +G +  A + K   +K      N ++ +  R G +
Sbjct: 470 DQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNALISMYSRCGNI 528

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDN 294
           E A  + E+ + R+  S W  ++        A  A  +  K++E  ++P+  ++Y+ + +
Sbjct: 529 ESAFQVFEDMEDRNVIS-WTSIITGFAKHGFATQALELFHKMLEEGVRPNL-VTYIAVLS 586

Query: 295 VYRAVGRWNDAFK 307
               VG  N+ +K
Sbjct: 587 ACSHVGLVNEGWK 599



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 128/250 (51%), Gaps = 21/250 (8%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMY--GKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           G  +   V+  G L  +V V   L+DM+  G+  LV  + +VF+KM ++N+V+ + ++  
Sbjct: 187 GDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVS-AFKVFEKMPERNAVTWTLMITR 245

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G     I +F EM     E D F+   V+ ACA +  L LG+++H Q IR     D
Sbjct: 246 LMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLD 305

Query: 118 VIIESALVDLYAKC---GCVDFAHQIFLQMPVRNLITWNSMISGFAQN-GRGEEALRIFD 173
             +   L+++YAKC   G +  A +IF Q+   N+ +W +MI+G+ Q  G  EEAL +F 
Sbjct: 306 RCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFR 365

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC----MVDL 229
            M      P+H +F   L AC+++  +  G + F      + +K      NC    ++ +
Sbjct: 366 GMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT-----HAVKLGFSSVNCVANSLISM 420

Query: 230 LGRAGLLEEA 239
             R+G +++A
Sbjct: 421 YARSGRIDDA 430



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 9/209 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQGYC 63
           G  VH K+    L  + V  +SL+ +Y KCG  +++  +F  M   ++ +S SA++  + 
Sbjct: 85  GTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFA 144

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC--KD 117
                   +  F +M E     + + F    RAC+    + +G  +   ++ ++G    D
Sbjct: 145 NNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIF-GFVVKTGYLQSD 203

Query: 118 VIIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           V +   L+D++ K  G +  A ++F +MP RN +TW  MI+   Q G   EA+ +F +M 
Sbjct: 204 VCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMI 263

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             G +PD  +  GV+SAC++M L+  G++
Sbjct: 264 LSGYEPDRFTLSGVISACANMELLLLGQQ 292



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           DL ++ + L+ C    +  +G  VH +  +     D +  ++L+ LY+KCG  + A  IF
Sbjct: 65  DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124

Query: 142 LQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
             M   R+LI+W++M+S FA N  G  AL  F DM E G  P+   F     ACS    +
Sbjct: 125 QLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFV 184

Query: 201 DRGRKHFASMTK 212
             G   F  + K
Sbjct: 185 SVGDSIFGFVVK 196


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 199/337 (59%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L  GK+VHA+ I  GL  N V + +++ + Y KCG +++  +VF++M  ++ +S ++L+ 
Sbjct: 391 LSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVT 450

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y Q  +++  I IF  M       + F+F  VL +CA L  L  G++VH    +     
Sbjct: 451 AYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDM 510

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  IESALVD+YAKCGC+  A ++F ++   + ++W ++I+G AQ+G  ++AL++F  M 
Sbjct: 511 DKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMV 570

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +P+ V+F+ VL ACSH GL++ G ++F  M K Y + P++EHY C+VDLL R G L
Sbjct: 571 QLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHL 630

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            +A   I       +  +W+ LLGAC    N  + E  A+KI+  K +   +YVLL N Y
Sbjct: 631 NDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTY 690

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              G + D   +R LMK  GVKK PG SWI  N  L+
Sbjct: 691 IESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLH 727



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 149/307 (48%), Gaps = 12/307 (3%)

Query: 2   LKQGKEVHAKVITLGLCG--NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           LKQ K VH  ++        ++V+ + +   Y KC  +D + R+FD+M ++N+ S + L+
Sbjct: 84  LKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLI 143

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G  + G F      F EM+      D F++  +L+ C GL ++ LG  VH Q + R   
Sbjct: 144 AGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFT 203

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
               + +AL+++YAK   ++ ++++F  M   N+++WN+MI+GF  N    +A  +F  M
Sbjct: 204 SHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRM 263

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  PD  +FIGV  A   +  +++  K  +    E  +         ++D+  + G 
Sbjct: 264 MGEGVTPDAQTFIGVAKAIGMLRDVNKA-KEVSGYALELGVDSNTLVGTALIDMNSKCGS 322

Query: 236 LEEAETLIEN--ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           L+EA ++  +    CR ++    ++ G   +  N    E  AK     + D +L +    
Sbjct: 323 LQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMC---QNDIYLDHYTYC 379

Query: 294 NVYRAVG 300
           +V+ A+ 
Sbjct: 380 SVFNAIA 386


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 202/367 (55%), Gaps = 36/367 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--------------------------- 34
           L+ G +VH+  + +G   N    ++L+ MYGKC                           
Sbjct: 435 LETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAA 494

Query: 35  ----GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSF 86
                L+DE+   FD ML ++ VS + ++  Y         +  F+ M    E  +    
Sbjct: 495 LVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPIL 554

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            I+L  C  L A ++G+++H   I+     ++I+ +AL+ +Y KCGC D + +IF  M  
Sbjct: 555 TILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEE 613

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R++ TWN++I+G+AQ+G G EA++++  M   G  P+ V+F+G+L+ACSH GL+D G K 
Sbjct: 614 RDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKF 673

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SM+++Y + P  EHY CMVDLLGR G ++ AE  I +     D+ +W  LLGAC   +
Sbjct: 674 FKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHK 733

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           NA + +R A+K+  ++P    +YV+L N+Y ++G W +  ++R +MK  GV K PG SW 
Sbjct: 734 NAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWT 793

Query: 327 EANSKLN 333
           +   K++
Sbjct: 794 QIKDKMH 800



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 109/202 (53%), Gaps = 10/202 (4%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80
           VV  ++L+  Y + G+V+E+  +FDKM  +N++S + ++ GY Q G  E  + + +E+  
Sbjct: 353 VVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHR 412

Query: 81  ----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVD 135
                 L S   +  AC+ + AL  G +VH   ++  GC+ +    +AL+ +Y KC  ++
Sbjct: 413 SGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK-VGCQFNSFACNALITMYGKCRNME 471

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           +A Q+F +M  +++++WNS ++   QN   +EA   FD+M       D VS+  ++SA +
Sbjct: 472 YARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYA 527

Query: 196 HMGLIDRGRKHFASMTKEYRIK 217
           H    +     F +M  E+ + 
Sbjct: 528 HAEQSNEAMGAFKTMFCEHELP 549



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 124/278 (44%), Gaps = 38/278 (13%)

Query: 16  GLCGNVVVESSLVDMYGK-CGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRI 74
           G   +VV+ ++++++Y +   ++D + + F+ M+++N  + S ++      G  ++ I +
Sbjct: 254 GFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAV 313

Query: 75  FREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE-SALVDLYAKCGC 133
           +   E   + S         GLA  + G+    + +     + +++  +AL+  Y + G 
Sbjct: 314 Y---ERDPVKSIACRTALITGLA--QCGRIDDARILFEQIPEPIVVSWNALITGYMQNGM 368

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           V+ A ++F +MP RN I+W  MI+G+AQNGR EEAL +  ++   G  P   S   +  A
Sbjct: 369 VNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFA 428

Query: 194 CSHMGLIDRGRK------------------------------HFASMTKEYRIKPKIEHY 223
           CS++  ++ G +                               +A       +   I  +
Sbjct: 429 CSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSW 488

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           N  +  L +  LL+EA    +N   R D S W  ++ A
Sbjct: 489 NSFLAALVQNDLLDEARNTFDNMLSRDDVS-WTTIISA 525



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 35/183 (19%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
           GN+   + L+  YG+ G V E+ RVFD ML++N+V+ +A++  Y Q GD     R+F  M
Sbjct: 94  GNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAM 153

Query: 79  EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
              D+ S+  +L               +C  ++            +VD          A 
Sbjct: 154 PSRDVSSWNSMLTG-------------YCHSLQ------------MVD----------AR 178

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +F +MP RNL++W  MISG+ +     +A  IF  M   G  PD  +F   LSA   +G
Sbjct: 179 NLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLG 238

Query: 199 LID 201
            +D
Sbjct: 239 NLD 241



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 76/146 (52%), Gaps = 4/146 (2%)

Query: 32  GKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLR 91
           G+ G V E+  VFD M +++ ++ ++++  YC  G  ++   ++  +   ++ +  I+L 
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLS 104

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
               L  +   + V    + R    + +  +A++  Y + G +  A ++F  MP R++ +
Sbjct: 105 GYGRLGRVLEARRVFDGMLER----NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSS 160

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTE 177
           WNSM++G+  + +  +A  +F+ M E
Sbjct: 161 WNSMLTGYCHSLQMVDARNLFEKMPE 186



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 23/213 (10%)

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           SGC      SA +    + G V  A ++F  MP R++I WNSMIS +  NG  + A  ++
Sbjct: 35  SGC------SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY 88

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
           D ++ G  +   +    +LS    +G +   R+ F  M +   +      +N M+    +
Sbjct: 89  DAISGGNMRTGAI----LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQ 139

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL-SYVL 291
            G +  A  L +    R  SS   +L G C + +        A+ + E  P+ +L S+ +
Sbjct: 140 NGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVD-----ARNLFEKMPERNLVSWTV 194

Query: 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324
           + + Y  +     A+ I   M   G+  +P +S
Sbjct: 195 MISGYGRIENHGKAWDIFCKMHREGL--LPDQS 225


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 204/333 (61%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA  +   L  +V V S+L+DMY +C  +D + RVFD +  KN VS +AL+ G+ +
Sbjct: 182 GEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFAR 241

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD E+ +  F EM+        F++  V  A A + AL  G+ VH   I+        +
Sbjct: 242 KGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFV 301

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + ++ +YAK G +  A ++F ++  R+L+TWN+M++ FAQ G G+EA+  F+++ + G 
Sbjct: 302 ANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGI 361

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           + + ++F+ VL+ACSH GL+  G+++F  M K+Y ++P+I+HY   VDLLGRAGLL+EA 
Sbjct: 362 QLNQITFLSVLTACSHGGLVKEGKQYF-DMMKDYNVEPEIDHYVSFVDLLGRAGLLKEAL 420

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             +        +++W  LLGAC   +NA + +  A  + EL P+     VLL N+Y + G
Sbjct: 421 IFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTG 480

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W+DA ++R +MK +GVKK P  SW+E  + ++
Sbjct: 481 QWDDAARVRKMMKATGVKKEPACSWVEIENSVH 513



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 139/270 (51%), Gaps = 10/270 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   + +H+ +    L G+  + +SL+ MY KCG V ++  VFD +  ++ VS + L+ G
Sbjct: 78  LAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITG 137

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q       + +  +M         F+F   L+A        +G+++H   ++ +  +D
Sbjct: 138 YAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDED 197

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YA+C  +D A ++F  +  +N ++WN++I+GFA+ G GE  L  F +M  
Sbjct: 198 VYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQR 257

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGL 235
            G    H ++  V SA + +G +++GR   A M K  +   K+  +  N ++ +  ++G 
Sbjct: 258 NGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQ---KLTAFVANTILGMYAKSGS 314

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTF 265
           + +A  + +  D R D   W  +L A   +
Sbjct: 315 MVDARKVFDRVDQR-DLVTWNTMLTAFAQY 343



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 110/264 (41%), Gaps = 31/264 (11%)

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           TG+     R++             ++ ACA    L   + +H    R     D  + ++L
Sbjct: 55  TGELAPTPRVYHS-----------IITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSL 103

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           + +Y KCG V  A  +F  +P R++++W  +I+G+AQN    EAL +  DM     +P  
Sbjct: 104 IHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSG 163

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
            +F   L A    G    G +  A   K Y +   +   + ++D+  R   ++ A  + +
Sbjct: 164 FTFTSFLKAAGACGGRGIGEQMHALAVK-YNLDEDVYVGSALLDMYARCQQMDMAIRVFD 222

Query: 245 NADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD----CHLSYVLLDNVYRAV- 299
             D +++ S W  L+     F      E    K  E++ +     H +Y    +V+ A+ 
Sbjct: 223 WLDSKNEVS-WNALIAG---FARKGDGETTLMKFAEMQRNGFGATHFTY---SSVFSALA 275

Query: 300 -------GRWNDAFKIRTLMKYSG 316
                  GRW  A  I++  K + 
Sbjct: 276 RIGALEQGRWVHAHMIKSGQKLTA 299



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 27/195 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+ VHA +I  G      V ++++ MY K G + ++ +VFD++ +++ V+ + +L  
Sbjct: 280 LEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTA 339

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  +  +  F E+     +++  +F  VL AC+    ++ GK    QY      KD
Sbjct: 340 FAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGK----QYF--DMMKD 393

Query: 118 VIIES------ALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALR 170
             +E       + VDL  + G +  A     +MP+      W +++           A R
Sbjct: 394 YNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLG----------ACR 443

Query: 171 IFDDMTEGGTKPDHV 185
           +  +   G    DHV
Sbjct: 444 MHKNAKIGQYAADHV 458


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 202/367 (55%), Gaps = 36/367 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--------------------------- 34
           L+ G +VH+  + +G   N    ++L+ MYGKC                           
Sbjct: 435 LETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAA 494

Query: 35  ----GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSF 86
                L+DE+   FD ML ++ VS + ++  Y         +  F+ M    E  +    
Sbjct: 495 LVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPIL 554

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            I+L  C  L A ++G+++H   I+     ++I+ +AL+ +Y KCGC D + +IF  M  
Sbjct: 555 TILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEE 613

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R++ TWN++I+G+AQ+G G EA++++  M   G  P+ V+F+G+L+ACSH GL+D G K 
Sbjct: 614 RDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKF 673

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SM+++Y + P  EHY CMVDLLGR G ++ AE  I +     D+ +W  LLGAC   +
Sbjct: 674 FKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHK 733

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           NA + +R A+K+  ++P    +YV+L N+Y ++G W +  ++R +MK  GV K PG SW 
Sbjct: 734 NAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWT 793

Query: 327 EANSKLN 333
           +   K++
Sbjct: 794 QIKDKMH 800



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 109/202 (53%), Gaps = 10/202 (4%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80
           VV  ++L+  Y + G+V+E+  +FDKM  +N++S + ++ GY Q G  E  + + +E+  
Sbjct: 353 VVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHR 412

Query: 81  ----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVD 135
                 L S   +  AC+ + AL  G +VH   ++  GC+ +    +AL+ +Y KC  ++
Sbjct: 413 SGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK-VGCQFNSFACNALITMYGKCRNME 471

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           +A Q+F +M  +++++WNS ++   QN   +EA   FD+M       D VS+  ++SA +
Sbjct: 472 YARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYA 527

Query: 196 HMGLIDRGRKHFASMTKEYRIK 217
           H    +     F +M  E+ + 
Sbjct: 528 HAEQSNEAMGAFKTMFCEHELP 549



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 124/278 (44%), Gaps = 38/278 (13%)

Query: 16  GLCGNVVVESSLVDMYGK-CGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRI 74
           G   +VV+ ++++++Y +   ++D + + F+ M+++N  + S ++      G  ++ I +
Sbjct: 254 GFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAV 313

Query: 75  FREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE-SALVDLYAKCGC 133
           +   E   + S         GLA  + G+    + +     + +++  +AL+  Y + G 
Sbjct: 314 Y---ERDPVKSIACRTALITGLA--QCGRIDDARILFEQIPEPIVVSWNALITGYMQNGM 368

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           V+ A ++F +MP RN I+W  MI+G+AQNGR EEAL +  ++   G  P   S   +  A
Sbjct: 369 VNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFA 428

Query: 194 CSHMGLIDRGRK------------------------------HFASMTKEYRIKPKIEHY 223
           CS++  ++ G +                               +A       +   I  +
Sbjct: 429 CSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSW 488

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           N  +  L +  LL+EA    +N   R D S W  ++ A
Sbjct: 489 NSFLAALVQNDLLDEARNTFDNMLSRDDVS-WTTIISA 525



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 35/183 (19%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
           GN+   + L+  YG+ G V E+ RVFD ML++N+V+ +A++  Y Q GD     R+F  M
Sbjct: 94  GNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAM 153

Query: 79  EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
              D+ S+  +L               +C  ++            +VD          A 
Sbjct: 154 PSRDVSSWNSMLTG-------------YCHSLQ------------MVD----------AR 178

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +F +MP RNL++W  MISG+ +     +A  IF  M   G  PD  +F   LSA   +G
Sbjct: 179 NLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLG 238

Query: 199 LID 201
            +D
Sbjct: 239 NLD 241



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 76/146 (52%), Gaps = 4/146 (2%)

Query: 32  GKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLR 91
           G+ G V E+  VFD M +++ ++ ++++  YC  G  ++   ++  +   ++ +  I+L 
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLS 104

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
               L  +   + V    + R    + +  +A++  Y + G +  A ++F  MP R++ +
Sbjct: 105 GYGRLGRVLEARRVFDGMLER----NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSS 160

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTE 177
           WNSM++G+  + +  +A  +F+ M E
Sbjct: 161 WNSMLTGYCHSLQMVDARNLFEKMPE 186



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 23/213 (10%)

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           SGC      SA +    + G V  A ++F  MP R++I WNSMIS +  NG  + A  ++
Sbjct: 35  SGC------SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY 88

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
           D ++ G  +   +    +LS    +G +   R+ F  M +   +      +N M+    +
Sbjct: 89  DAISGGNMRTGAI----LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQ 139

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL-SYVL 291
            G +  A  L +    R  SS   +L G C + +        A+ + E  P+ +L S+ +
Sbjct: 140 NGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVD-----ARNLFEKMPERNLVSWTV 194

Query: 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324
           + + Y  +     A+ I   M   G+  +P +S
Sbjct: 195 MISGYGRIENHGKAWDIFCKMHREGL--LPDQS 225


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/336 (34%), Positives = 202/336 (60%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++V    + LG      V +SL+ MY + G +D++ + FD + +KN +S + ++  
Sbjct: 392 LRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDA 451

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +  + E  + +F E+E+  +    F+F  +L   A +  +  G+++H + I+     +
Sbjct: 452 YAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLN 511

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +AL+ +Y++CG ++ A Q+F  M  RN+I+W S+I+GFA++G   +AL +F  M E
Sbjct: 512 QSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLE 571

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+ V++I VLSACSH+GL++ G KHF SM  E+ + P++EHY C+VD+LGR+G L 
Sbjct: 572 EGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLS 631

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   I +   + D+ +W   LGAC    N  + +  AK I+E +P    +Y+LL N+Y 
Sbjct: 632 EAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYA 691

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           ++ +W++   IR  MK   + K  G SW+E  +K++
Sbjct: 692 SISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVH 727



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 167/313 (53%), Gaps = 13/313 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSALLQG 61
           G+++H++ I  GL  +  V   L++MY KC   G +  + ++FD++L  N  S +A++ G
Sbjct: 290 GQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITG 349

Query: 62  YCQTGDF-ESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q G + E  + +FR M    +    F+F   L+ACA LAALR+G++V    ++     
Sbjct: 350 YVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSS 409

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + ++L+ +YA+ G +D A + F  +  +NLI++N++I  +A+N   EEAL +F+++ 
Sbjct: 410 VNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE 469

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G      +F  +LS  + +G I +G +  A + K   +K      N ++ +  R G +
Sbjct: 470 DQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNALISMYSRCGNI 528

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDN 294
           E A  + E+ + R+  S W  ++        A  A  +  K++E  ++P+  ++Y+ + +
Sbjct: 529 ESAFQVFEDMEDRNVIS-WTSIITGFAKHGFATQALELFHKMLEEGVRPN-EVTYIAVLS 586

Query: 295 VYRAVGRWNDAFK 307
               VG  N+ +K
Sbjct: 587 ACSHVGLVNEGWK 599



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 128/250 (51%), Gaps = 21/250 (8%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMY--GKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           G  +   VI  G L  +V V   L+DM+  G+  LV  + +VF+KM ++N+V+ + ++  
Sbjct: 187 GDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVS-AFKVFEKMPERNAVTWTLMITR 245

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G     I +F +M     E D F+   V+ ACA +  L LG+++H Q IR     D
Sbjct: 246 LMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLD 305

Query: 118 VIIESALVDLYAKC---GCVDFAHQIFLQMPVRNLITWNSMISGFAQN-GRGEEALRIFD 173
             +   L+++YAKC   G +  A +IF Q+   N+ +W +MI+G+ Q  G  EEAL +F 
Sbjct: 306 RCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFR 365

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC----MVDL 229
            M      P+H +F   L AC+++  +  G + F      + +K      NC    ++ +
Sbjct: 366 GMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT-----HAVKLGFSSVNCVANSLISM 420

Query: 230 LGRAGLLEEA 239
             R+G +++A
Sbjct: 421 YARSGRIDDA 430



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 7/208 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQGYC 63
           G  VH K+    L  + V  +SL+ +Y KCG  +++  +F  M   ++ +S SA++  + 
Sbjct: 85  GTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFA 144

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DV 118
                   +  F +M E     + + F    RAC+    + +G  +    I+    + DV
Sbjct: 145 NNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDV 204

Query: 119 IIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            +   L+D++ K  G +  A ++F +MP RN +TW  MI+   Q G   EA+ +F DM  
Sbjct: 205 CVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIF 264

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G +PD  +  GV+SAC++M L+  G++
Sbjct: 265 SGYEPDRFTLSGVISACANMELLLLGQQ 292



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           DL ++ + L+ C    +  +G  VH +  +     D +  ++L+ LY+KCG  + A  IF
Sbjct: 65  DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124

Query: 142 LQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
             M   R+LI+W++M+S FA N  G  AL  F DM E G  P+   F     ACS    +
Sbjct: 125 RLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFV 184

Query: 201 DRGRKHFASMTK 212
             G   F  + K
Sbjct: 185 SVGDSIFGFVIK 196


>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
          Length = 516

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 130/329 (39%), Positives = 204/329 (62%), Gaps = 8/329 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H  V+  GL  +V V ++LV MYG    ++ +  +F++M K   V+ + ++     
Sbjct: 170 GKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVY 229

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI- 119
            G ++  I +F  M +  L     +F + L ACA L  L +G+ VH   I  +G  +V+ 
Sbjct: 230 CGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVH-SCIDHTGLGNVVS 288

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+D+YAKCG V+ A++IF +M  RN+++WN+MI G A +G G+EAL +F  M E  
Sbjct: 289 VSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEK 348

Query: 180 -TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
              P+ V+F+GVL ACSH G+++ GR++F  M ++Y I+P I+HY  MVD+LGRAGL+EE
Sbjct: 349 LATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEE 408

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A  LI++     +S +W  LL AC    N  +AE+V + ++EL+PD    YVLL N+Y +
Sbjct: 409 AYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQXLLELEPDHSSDYVLLANMYAS 468

Query: 299 VGRWNDAFKIRTLMKYSGVKK-MPGKSWI 326
            G+WN   ++R  M   GV+K  PG S+I
Sbjct: 469 AGQWNKVXRVRKSMHIRGVQKPKPGNSYI 497



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 134/265 (50%), Gaps = 7/265 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM--YGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           +K  +++HA VI  GL  N+ V   ++      +CG +D + RVF K+   +    + ++
Sbjct: 64  MKHLEQLHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALRVFGKIENPDGFLWNTMI 123

Query: 60  QGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           +G  +T   E     ++ M    E +D F++  +++ C  L +  LGK++HC  ++    
Sbjct: 124 RGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLE 183

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           + V + + LV +Y     ++ A  +F +MP   L+ WN++I      GR +EA+ +F  M
Sbjct: 184 EHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRM 243

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G KPD  +F+  LSAC+ +G +D GR+   S      +   +   N ++D+  + G+
Sbjct: 244 LQSGLKPDDATFVVTLSACAALGELDIGRR-VHSCIDHTGLGNVVSVSNSLIDMYAKCGV 302

Query: 236 LEEAETLIENADCRHDSSLWEVLLG 260
           +E A  +      R+  S   ++LG
Sbjct: 303 VEAAYEIFNKMKGRNIVSWNTMILG 327


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 130/333 (39%), Positives = 206/333 (61%), Gaps = 9/333 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQ 60
           L+ GK+VHA V+  G   +  V+++L+  Y K G +D   ++F  M  ++++VS ++++ 
Sbjct: 594 LELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMIS 653

Query: 61  GYCQTGDFESVIR----IFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY   G  +  +     +    + +D  +F IVL ACA +AAL  G E+H   IR     
Sbjct: 654 GYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLES 713

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV++ESAL+D+Y+KCG +D+A ++F  M  +N  +WNSMISG+A++G GE+AL IF++M 
Sbjct: 714 DVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQ 773

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  PDHV+F+ VLSACSH GL+DRG  +F  M +++ I P IEHY+C++DLLGRAG L
Sbjct: 774 RNGACPDHVTFVSVLSACSHAGLVDRGLDYF-EMMEDHGILPHIEHYSCVIDLLGRAGKL 832

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNA---HVAERVAKKIMELKPDCHLSYVLLD 293
            + +  I     + ++ +W  +L AC   ++     + +  ++ ++EL+P   ++YVL  
Sbjct: 833 LKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLAS 892

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N Y A GRW D  K R  M  + +KK  G+SW+
Sbjct: 893 NFYAATGRWEDTAKARAAMGGAAMKKEAGQSWV 925



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 140/280 (50%), Gaps = 15/280 (5%)

Query: 2   LKQGKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L +G+EVH  ++  GL    + + + LV+MY KCG +D++ RVF  +  ++ VS + ++ 
Sbjct: 390 LMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIIS 449

Query: 61  GYCQTGDFESVIRIFREMEE--IDLFSFGIV--LRACAGLAALRLGKEVHCQYIRRSGCK 116
              Q G  E  +  +  M +  I   +F  +  L +CA L  L  G++VHC  ++     
Sbjct: 450 VLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDL 509

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS----MISGFAQNGRGEEALRIF 172
           D  + +ALV +Y  CG    + +IF  M   ++++WNS    M+S  A      E++ +F
Sbjct: 510 DTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTA---ESVEVF 566

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            +M   G  P+ V+F+ +LSA S + +++ G++  A + K   I+      N ++    +
Sbjct: 567 SNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVD-NALMSCYAK 625

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
           +G ++  E L  +   R D+  W  ++       N H+ E
Sbjct: 626 SGDMDSCEQLFSSMSGRRDAVSWNSMISG--YIYNGHLQE 663



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 144/277 (51%), Gaps = 13/277 (4%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           +V A+V+  G   ++ V S+LV  + + G++DE+  +F  + ++N+V+ + L+ G  +  
Sbjct: 291 QVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQH 350

Query: 67  DFESVIRIF---REMEEIDLFSFGIVLRACAGLA----ALRLGKEVHCQYIRRSGCKD-- 117
             E  + IF   R+   ++  +F ++L A A  +     L  G+EVH  +I R+G  D  
Sbjct: 351 CSEEAVGIFMGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVH-GHILRTGLIDLK 409

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + + LV++YAKCG +D A ++F  +  R+ ++WN++IS   QNG  E A+  +  M +
Sbjct: 410 IALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQ 469

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G   P + + I  LS+C+ + L+  G++      K + +       N +V + G  G   
Sbjct: 470 GCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVK-WGLDLDTSVSNALVKMYGDCGARS 528

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
           E+  +  N+   HD   W  ++G   +  +A  AE V
Sbjct: 529 ESWEIF-NSMAEHDIVSWNSIMGVMVS-SHAPTAESV 563



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 134/268 (50%), Gaps = 16/268 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH   +  GL  +  V ++LV MYG CG   ES  +F+ M + + VS ++++  
Sbjct: 492 LTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGV 551

Query: 62  YCQT-GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
              +       + +F  M    L     +F  +L A + L+ L LGK+VH   ++    +
Sbjct: 552 MVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIE 611

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           D  +++AL+  YAK G +D   Q+F  M   R+ ++WNSMISG+  NG  +E +     M
Sbjct: 612 DNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLM 671

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLG 231
                  D  +F  VL+AC+ +  ++RG +  A     + I+ ++E      + ++D+  
Sbjct: 672 MHSNQMLDCCTFSIVLNACASVAALERGMEMHA-----FGIRSQLESDVVVESALLDMYS 726

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLL 259
           + G ++ A  +  +   +++ S W  ++
Sbjct: 727 KCGRIDYASKVFNSMSQKNEFS-WNSMI 753



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 137/274 (50%), Gaps = 23/274 (8%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + +H +++  GL  ++ + + LV++Y K   +  + +VFD ML++N+VS + L+ GY  +
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 66  GDFESVIRIFR-------EMEEIDLFSFGIVLRAC--AGLAALRLGKEVHCQYIRRSGCK 116
           G  +   R+F+       E      F+FG VLRAC  AG   L    +VH    +     
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYAS 195

Query: 117 DVIIESALVDLYAKC--GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
           +  + +AL+ +Y  C  G    A Q+F   PVR+LITWN+++S +A+ G       +F  
Sbjct: 196 NTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMA 255

Query: 175 MTEGGT----KPDHVSFIGVLSACS----HMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           M    +    +P+  +F  +++A S      G++D   + FA + K       +   + +
Sbjct: 256 MLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLD---QVFARVLKSGS-SSDLYVGSAL 311

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           V    R G+L+EA+ +  N   R+  +L  +++G
Sbjct: 312 VSAFARHGMLDEAKDIFINLKERNAVTLNGLIVG 345



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 8/113 (7%)

Query: 94  AGLAALRLGKE-----VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           AGL   R G+E     +H + ++R    D+ + + LV+LYAK   +  A Q+F  M  RN
Sbjct: 62  AGLLLPRRGEEAAPERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERN 121

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGG---TKPDHVSFIGVLSACSHMG 198
            ++W  ++SG+  +G  +EA R+F  M   G   ++P   +F  VL AC   G
Sbjct: 122 AVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAG 174


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/337 (38%), Positives = 194/337 (57%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G ++H  +I  G   NV V + L+D YGKCG V+ S  VFD+M ++NSVS S+L+  
Sbjct: 225 LGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAA 284

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  + E    +F    + D+    F    VL ACAGL+ +  G+ V    ++    ++
Sbjct: 285 YVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQN 344

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + SALVD+Y KCG +D A Q F  MP RNL++WN+++ G+A  G   +A+ + ++MT 
Sbjct: 345 IFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTS 404

Query: 178 G-GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  P +VS I  LSACS  G +  G K F SM + Y ++P  EHY C+VDLLGRAG++
Sbjct: 405 AAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMV 464

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E A   I+        S+W  LLGAC       + +  A+K+ EL P    ++V+L N++
Sbjct: 465 ECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMF 524

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A GRW +   +R  MK  G+KK  G SWI  +S+++
Sbjct: 525 AATGRWEEVTVVRNEMKEVGIKKGAGFSWITVDSRIH 561



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 6/260 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA  +  GL  +V V  S+ DMY K G ++++++VFD+M  +N  + +A +     
Sbjct: 127 GKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVL 186

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  +  F E+  +    D  +F   L AC+    L  G ++H   IR    ++V +
Sbjct: 187 HGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSV 246

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L+D Y KCG V+ +  +F +M  RN ++W+S+I+ + QN   E+A  +F    +   
Sbjct: 247 SNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDI 306

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +P       VL AC+ +  I+ GR   A   K   ++  I   + +VD+ G+ G ++ AE
Sbjct: 307 EPTDFMVSSVLCACAGLSEIEFGRSVQALAVKAC-VEQNIFVASALVDMYGKCGSIDNAE 365

Query: 241 TLIENADCRHDSSLWEVLLG 260
               NA    +   W  LLG
Sbjct: 366 QAF-NAMPERNLVSWNALLG 384



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 136/263 (51%), Gaps = 9/263 (3%)

Query: 5   GKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+  HA+++ TL       + + LV+MY K   ++ +  + +    ++ V+ +AL+ G  
Sbjct: 25  GRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSV 84

Query: 64  QTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q G F S +  F +M       + F+F  VL+A  GL     GK++H   ++     DV 
Sbjct: 85  QNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVF 144

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           +  ++ D+Y+K G ++ A+++F +MP RNL TWN+ IS    +GR E+++  F ++   G
Sbjct: 145 VGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVG 204

Query: 180 TKPDHVSFIGVLSACS-HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            KPD ++F   L+ACS  +GL    + H   +   Y     +   N ++D  G+ G +E 
Sbjct: 205 GKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVS--NGLIDFYGKCGEVEC 262

Query: 239 AETLIENADCRHDSSLWEVLLGA 261
           +E + +    R+  S W  L+ A
Sbjct: 263 SEMVFDRMGERNSVS-WSSLIAA 284


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 130/331 (39%), Positives = 203/331 (61%), Gaps = 8/331 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK++HA  I  GL  ++ + ++L+DMY KCG +  +  +F++  +K+ VS + L+ G
Sbjct: 259 LKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERS-EKDDVSYNTLILG 317

Query: 62  YCQTGD-FESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q+   FES++ +F++M  +    D  SF   L AC  L+  + GKE+HC  +RR    
Sbjct: 318 YSQSPWCFESLL-LFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSG 376

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + ++L+DLY K G +  A +IF ++  +++ +WN+MI G+  +G+ + A  +F+ M 
Sbjct: 377 HPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMK 436

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G   DHVS+I VL+ACSH GL+D+G+K+F+ M  +  I+P+  HY CMVDLLGRAG L
Sbjct: 437 GDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMHYACMVDLLGRAGQL 495

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            +   +I +     +S +W  LLGAC    N  +A+  A+ + ELKP+    Y L+ N+Y
Sbjct: 496 SKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMY 555

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
              GRWN+A KIR LMK   V+K P  SW++
Sbjct: 556 AETGRWNEANKIRKLMKSRKVQKNPAYSWVQ 586



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 150/263 (57%), Gaps = 8/263 (3%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G  +HA  + +GL   V + ++LVDMYGK G V+ S +VFD ML++N VS ++ +  +
Sbjct: 58  KFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCF 117

Query: 63  CQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G +  V+R+FR+M E ++    I    +L A   L +  LG+EVH   I+R+   D+
Sbjct: 118 LNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDI 177

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + ++LVD+YAK G ++ A  IF QM  RN+++WN+MI+   QNG   EA R+  DM + 
Sbjct: 178 FVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKS 237

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  P+ ++ + VL AC+ M  +  G++ H  S+ +       I   N ++D+  + G L 
Sbjct: 238 GECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFIS--NALIDMYSKCGQLS 295

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
            A  + E ++ + D S   ++LG
Sbjct: 296 LARNIFERSE-KDDVSYNTLILG 317



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 106/219 (48%), Gaps = 8/219 (3%)

Query: 47  MLKKNSVSSSALLQGYCQTGDF----ESVIRIFREMEEIDLFSFGIVLRACAGLAALRLG 102
           M +++ VS ++L+  +   G F     +++ + R    +++ S   V+ AC      + G
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFG 60

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
             +H   ++      V + +ALVD+Y K G V+ + Q+F  M  +N ++WNS I  F   
Sbjct: 61  LSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNA 120

Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIE 221
           G   + LR+F  M+E    P  ++   +L A   +G  D GR+ H  S+ +   +   + 
Sbjct: 121 GFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVA 180

Query: 222 HYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             N +VD+  + G LE+A T+ E    R+  S W  ++ 
Sbjct: 181 --NSLVDMYAKFGSLEKASTIFEQMKDRNVVS-WNAMIA 216


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 126/336 (37%), Positives = 200/336 (59%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K++H  +   GL  ++   S+L+D+Y  C  + +S  VFD+M  K+ V  +++  G
Sbjct: 470 LGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAG 529

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  + E  + +F E+    E  D F+F  ++ A   LA+++LG+E HCQ ++R    +
Sbjct: 530 YVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECN 589

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I +AL+D+YAKCG  + AH+ F     R+++ WNS+IS +A +G G++AL++ + M  
Sbjct: 590 PYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMS 649

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P++++F+GVLSACSH GL++ G K F  M + + I+P+ EHY CMV LLGRAG L 
Sbjct: 650 EGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLN 708

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LIE    +  + +W  LL  C    N  +AE  A+  +   P    S+ +L N+Y 
Sbjct: 709 KARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYA 768

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G W +A K+R  MK  GV K PG+SWI  N +++
Sbjct: 769 SKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVH 804



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 164/324 (50%), Gaps = 14/324 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VHA  I   L  +  V +SL+DMY KC  + ++ +VFD     + V  +A+++GY +
Sbjct: 369 GTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSR 428

Query: 65  TG---DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
            G   +    + IFR+M        L +F  +LRA A L +L L K++H    +     D
Sbjct: 429 LGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLD 488

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +   SAL+D+Y+ C C+  +  +F +M V++L+ WNSM +G+ Q    EEAL +F ++  
Sbjct: 489 IFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQL 548

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
              +PD  +F  +++A  ++  +  G++ H   + +     P I   N ++D+  + G  
Sbjct: 549 SRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYIT--NALLDMYAKCGSP 606

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDN 294
           E+A    ++A  R D   W  ++ +         A ++ +K+M   ++P+ ++++V + +
Sbjct: 607 EDAHKAFDSAASR-DVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPN-YITFVGVLS 664

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVK 318
                G   D  K   LM   G++
Sbjct: 665 ACSHAGLVEDGLKQFELMLRFGIE 688



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 133/260 (51%), Gaps = 21/260 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++HA ++  GL  +  + + L+D Y KCG V  +H++F+ M  KN +S + LL G
Sbjct: 265 LEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSG 324

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    +  + +F  M +     D+++   +L +CA L AL  G +VH   I+ +   D
Sbjct: 325 YKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGND 384

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG---EEALRIFDD 174
             + ++L+D+YAKC C+  A ++F      +++ +N+MI G+++ G      EAL IF D
Sbjct: 385 SYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRD 444

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M     +P  ++F+ +L A + +  +   ++    M K          Y   +D+   + 
Sbjct: 445 MRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFK----------YGLNLDIFAGSA 494

Query: 235 LLEEAETLIENADCRHDSSL 254
           L++    +  N  C  DS L
Sbjct: 495 LID----VYSNCYCLKDSRL 510



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 130/246 (52%), Gaps = 13/246 (5%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++ + ++  G   +V V + L+D Y K G +D +  VFD + +K++V+ + ++ G  + G
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228

Query: 67  DFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
                +++F ++ E     D +    VL AC+ L  L  GK++H   +R     D  + +
Sbjct: 229 RSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMN 288

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            L+D Y KCG V  AH++F  MP +N+I+W +++SG+ QN   +EA+ +F  M++ G KP
Sbjct: 289 VLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKP 348

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEE 238
           D  +   +L++C+ +  +      F +    Y IK  + +     N ++D+  +   L +
Sbjct: 349 DMYACSSILTSCASLHALG-----FGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTD 403

Query: 239 AETLIE 244
           A  + +
Sbjct: 404 ARKVFD 409



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 131/262 (50%), Gaps = 15/262 (5%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH ++I  GL  +  + + L+++Y + G +  + +VF+KM ++N VS S ++      G 
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query: 68  FESVIRIFREM--------EEIDLFSFGIVLRACAGLAALRLGKEVHCQ-YIRRSGC-KD 117
           +E  + +F E          E  L SF   ++AC+GL           Q ++ +SG  +D
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSF---IQACSGLDGRGRWMVFQLQSFLVKSGFDRD 182

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + L+D Y K G +D+A  +F  +P ++ +TW +MISG  + GR   +L++F  + E
Sbjct: 183 VYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLME 242

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               PD      VLSACS +  ++ G++  A + + Y ++      N ++D   + G + 
Sbjct: 243 DNVVPDGYILSTVLSACSILPFLEGGKQIHAHILR-YGLEMDASLMNVLIDSYVKCGRVI 301

Query: 238 EAETLIENADCRHDSSLWEVLL 259
            A  L      ++  S W  LL
Sbjct: 302 AAHKLFNGMPNKNIIS-WTTLL 322



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 18/235 (7%)

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
             DF S I I    E    F+  + LRA   L  L     VH Q I      D  + + L
Sbjct: 32  NADFPSTIGIRGRRE----FARLLQLRASDDL--LHYQNVVHGQIIVWGLELDTYLSNIL 85

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG-GTKPD 183
           ++LY++ G + +A ++F +MP RNL++W++M+S    +G  EE+L +F +        P+
Sbjct: 86  INLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPN 145

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEA 239
                  + ACS  GL  RGR     + + + +K   +        ++D   + G ++ A
Sbjct: 146 EYILSSFIQACS--GLDGRGRWMVFQL-QSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYA 202

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCH-LSYVL 291
             L+ +A     +  W  ++  C     ++V+ ++  ++ME  + PD + LS VL
Sbjct: 203 R-LVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVL 256


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/307 (39%), Positives = 187/307 (60%), Gaps = 4/307 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF---- 75
           + V  ++++  Y + G + ++  +F +M +KN+VS ++++ G+ Q G F      F    
Sbjct: 390 DTVSWNTMIAGYAQGGQMRKAIGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMR 449

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           R     D  ++   LRACA LAAL +G+++H   +R     D+   +AL+  YAKCG + 
Sbjct: 450 RGTNRADWSTYASCLRACANLAALHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRML 509

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A QIF +M  +++++WN+++ G+A NG+G EA+ +F +M   G +PD V+F+G+LSACS
Sbjct: 510 EAKQIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGILSACS 569

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
             GLID G   F SMT+EY +KP  EHY CM DLLGRAG L EA  L++    + ++ +W
Sbjct: 570 RAGLIDEGLGFFNSMTEEYSLKPVAEHYACMADLLGRAGKLNEAFELVQGMQIQPNAGVW 629

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGAC  ++N  +A   A+K+ EL+P    +YVLL N+    G+W++A K R  +K  
Sbjct: 630 GALLGACQMYKNHELARLAAEKLSELEPCRASNYVLLSNISAEAGKWDEAEKARASIKEK 689

Query: 316 GVKKMPG 322
           G  K PG
Sbjct: 690 GANKPPG 696



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 12/231 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  +S++    + G +DE+  +FD M  +N+VS +A++      G       +F  M 
Sbjct: 48  NTVTYNSMLSALARHGRIDEARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRMP 107

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
             D FS+ +++   A    L L ++V     R  G K     +A++  YAK G  D A +
Sbjct: 108 SRDDFSWTVMVSCYARAGELELARDV---LDRMPGDKCTACYNAMISGYAKNGRFDDAVK 164

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +  +MP  +L +WNS ++G  Q+G+   A++ FD+M E     D VS+  +L      G 
Sbjct: 165 LLREMPAPDLFSWNSALAGLTQSGQMVRAVQFFDEMVE----KDMVSWNLMLEGFVRAGD 220

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
           +D     F  +       P +  +  +++   RAG + +A  L +    R+
Sbjct: 221 LDAAASFFGRIE-----SPNVVSWVTLLNGYCRAGRISDARDLFDRMPERN 266



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 5/225 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N +  ++++    + G + E+  + DKM      + +AL+ GY Q        +IF  ME
Sbjct: 297 NSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMVNDARQIFDGME 356

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
             D   +  ++        L    E      +R   KD +  + ++  YA+ G +  A  
Sbjct: 357 VHDTVCWNTMISGYVQRGML----EEAMLLFQRMPNKDTVSWNTMIAGYAQGGQMRKAIG 412

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           IF +M  +N ++WNS+ISGF QNG   +A   F  M  G  + D  ++   L AC+++  
Sbjct: 413 IFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTNRADWSTYASCLRACANLAA 472

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           +  GR+  + + +   I       N ++    + G + EA+ + +
Sbjct: 473 LHVGRQLHSLLVRSGHINDLFAR-NALISTYAKCGRMLEAKQIFD 516



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 138/298 (46%), Gaps = 30/298 (10%)

Query: 32  GKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLR 91
            + G +  + R+FD M ++N+V+ +++L    + G  +    +F  M   +  S+  ++ 
Sbjct: 29  ARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSRNAVSWNAMIA 88

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT 151
           A +    +   + +      R   +D    + +V  YA+ G ++ A  +  +MP      
Sbjct: 89  ALSDHGRVADARGL----FDRMPSRDDFSWTVMVSCYARAGELELARDVLDRMPGDKCTA 144

Query: 152 -WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
            +N+MISG+A+NGR ++A+++  +M      PD  S+   L+  +  G + R  + F  M
Sbjct: 145 CYNAMISGYAKNGRFDDAVKLLREM----PAPDLFSWNSALAGLTQSGQMVRAVQFFDEM 200

Query: 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHV 270
                ++  +  +N M++   RAG L+ A +     +  +  S   +L G C   R   +
Sbjct: 201 -----VEKDMVSWNLMLEGFVRAGDLDAAASFFGRIESPNVVSWVTLLNGYC---RAGRI 252

Query: 271 AERVAKKIMELKPDCHLSY--VLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           ++  A+ + +  P+ ++    V+LD   R + R  +A K+          +MPGK+ I
Sbjct: 253 SD--ARDLFDRMPERNVVACNVMLDGYVR-LSRLEEACKL--------FDEMPGKNSI 299



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 11/225 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H+ ++  G   ++   ++L+  Y KCG + E+ ++FD+M+ K+ VS +AL+ G
Sbjct: 473 LHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRMLEAKQIFDEMVGKDIVSWNALVDG 532

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     I +FREME      D  +F  +L AC+    +  G             K 
Sbjct: 533 YASNGQGTEAISVFREMEANGVRPDEVTFVGILSACSRAGLIDEGLGFFNSMTEEYSLKP 592

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRI-FDD 174
           V    A + DL  + G ++ A ++   M ++ N   W +++ G  Q  +  E  R+  + 
Sbjct: 593 VAEHYACMADLLGRAGKLNEAFELVQGMQIQPNAGVWGALL-GACQMYKNHELARLAAEK 651

Query: 175 MTEGGTKPDHVSFIGVLSACS-HMGLIDRGRKHFASMTKEYRIKP 218
           ++E   +P   S   +LS  S   G  D   K  AS+ ++   KP
Sbjct: 652 LSE--LEPCRASNYVLLSNISAEAGKWDEAEKARASIKEKGANKP 694


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 202/336 (60%), Gaps = 7/336 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKC-GLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G + H  +I  G  GN  V S L+D+Y KC G + E  +VF+++   + V  + ++ G+ 
Sbjct: 262 GMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFS 321

Query: 64  QTGDF-ESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS-GCKD 117
           Q  D  E  I  FREM+      D  SF  V  AC+ L++  +GK+VH   I+       
Sbjct: 322 QYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNR 381

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +ALV +Y+KCG V  A ++F  MP  N+++ NSMI+G+AQ+G   E+LR+F+ M +
Sbjct: 382 VSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQ 441

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+ ++FI VLSAC H G ++ G+K+F  M + +RI+P+ EHY+CM+DLLGRAG L+
Sbjct: 442 KDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLK 501

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE +IE       S  W  LLGAC    N  +A + A + ++L+P     YV+L N+Y 
Sbjct: 502 EAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYA 561

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +  RW +A  ++ LM+  GVKK PG SWIE + K++
Sbjct: 562 SAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVH 597



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 131/264 (49%), Gaps = 9/264 (3%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGY 62
           +++H  V+  G      V ++++  Y + G ++E+ RVF +M +   ++ VS +A++   
Sbjct: 159 RQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVAC 218

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q  +    + +FREM     ++D+F+   VL A   +  L  G + H   I+     + 
Sbjct: 219 GQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNS 278

Query: 119 IIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQ-NGRGEEALRIFDDMT 176
            + S L+DLY+KC G +    ++F ++   +L+ WN+MISGF+Q     E+ +  F +M 
Sbjct: 279 HVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQ 338

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  PD  SF+ V SACS++     G++  A   K      ++   N +V +  + G +
Sbjct: 339 HNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNV 398

Query: 237 EEAETLIENADCRHDSSLWEVLLG 260
            +A  + +     +  SL  ++ G
Sbjct: 399 HDARRVFDTMPEHNMVSLNSMIAG 422



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 95/181 (52%), Gaps = 9/181 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV   ++L++ Y K  L+  + +VFD++ + + VS + L+  Y   G+    +R+F E+ 
Sbjct: 74  NVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVR 133

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           E    +D F+   V+ AC     + L +++HC  +         + +A++  Y++ G ++
Sbjct: 134 ELRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLN 191

Query: 136 FAHQIFLQMPV---RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
            A ++F +M     R+ ++WN+MI    Q+  G EA+ +F +M   G K D  +   VL+
Sbjct: 192 EARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLT 251

Query: 193 A 193
           A
Sbjct: 252 A 252



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 7/154 (4%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +V   + L++ YAK   +  A Q+F ++P  +++++N++I+ +A  G    ALR+F ++
Sbjct: 73  PNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEV 132

Query: 176 TEGGTKPDHVSFIGVLSACS-HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
            E     D  +  GV+ AC   +GL+   + H   +   Y     +   N ++    R G
Sbjct: 133 RELRFGLDGFTLSGVIIACGDDVGLVR--QLHCFVVVCGYDCYASVN--NAVLACYSRKG 188

Query: 235 LLEEAETLIEN--ADCRHDSSLWEVLLGACTTFR 266
            L EA  +          D   W  ++ AC   R
Sbjct: 189 FLNEARRVFREMGEGGGRDEVSWNAMIVACGQHR 222


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/332 (38%), Positives = 196/332 (59%), Gaps = 4/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +   +   GL  NV V +SLVDMY KCG ++E+  VFD M++K+ V  SA++QG
Sbjct: 221 LESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQG 280

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     I +F EM ++    D ++    L +CA L AL LG              +
Sbjct: 281 YASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSN 340

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            ++ ++L+D YAKCG ++ A  ++  M  ++ + +N++ISG A  G+   A  +F  M +
Sbjct: 341 PVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGK 400

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P+  +F+G+L  C+H GL+D GR +F SM+ ++ + P IEHY CMVDLL RAG L+
Sbjct: 401 FGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLD 460

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI+    + +  +W  LLG C   R   +AE V K+++EL+P     YVLL N+Y 
Sbjct: 461 EAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYS 520

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           A  RW++A KIR+ +   G++K+PG SW+E +
Sbjct: 521 ASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVD 552



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 134/241 (55%), Gaps = 9/241 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H+ V   G   +V V++++V  Y KCG + ++ +VFD M+ KN VS + ++ G  +
Sbjct: 123 GVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIE 182

Query: 65  TGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSG-CKDVI 119
            G F   + +FR + E  L   G     VLRACA L  L  G+ +  + +R  G  ++V 
Sbjct: 183 FGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWID-RCMRECGLSRNVF 241

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++LVD+Y KCG ++ A  +F  M  ++++ W++MI G+A NG   EA+ +F +M +  
Sbjct: 242 VATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVN 301

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMT-KEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            +PD  + +G LS+C+ +G ++ G      M  +E+   P +     ++D   + G +EE
Sbjct: 302 VRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLG--TSLIDFYAKCGSMEE 359

Query: 239 A 239
           A
Sbjct: 360 A 360



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 9/251 (3%)

Query: 43  VFDKM-LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLA 97
           VF K     N+   + +++G      F + + ++  M +     D F+F  VL+ACA L 
Sbjct: 59  VFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLN 118

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
              LG  +H    +     DV +++ +V  Y+KCG +  A ++F  M V+N+++W  MI 
Sbjct: 119 LFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMIC 178

Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
           G  + G+  EA+ +F  + E G +PD    + VL AC+ +G ++ GR     M +E  + 
Sbjct: 179 GCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCM-RECGLS 237

Query: 218 PKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG--ACTTFRNAHVAERVA 275
             +     +VD+  + G +EEA  + +      D   W  ++   A        +     
Sbjct: 238 RNVFVATSLVDMYTKCGSMEEARFVFDGM-VEKDIVCWSAMIQGYASNGLPREAIELFFE 296

Query: 276 KKIMELKPDCH 286
            + + ++PDC+
Sbjct: 297 MRKVNVRPDCY 307


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/335 (39%), Positives = 198/335 (59%), Gaps = 6/335 (1%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           LK G  VH   +    L  +V++++SLVDMY K G ++ + RVF++M +KN+VS  AL+ 
Sbjct: 223 LKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALIS 282

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCK 116
           G+ Q G  E  + +  EM+ ++      VL     AC+ +  L+LGK +H   +RR G  
Sbjct: 283 GFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGF- 341

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++++ +AL+D+YAKCG +  AH IF ++  R++I WN+MI+ +  +G G+E L +F  M 
Sbjct: 342 ELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMK 401

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E    PDH +F  +LSA SH G +D G+  F +M  E +I P  +HY CMVDL  RAG +
Sbjct: 402 EANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGRV 461

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA  LIE+ +     ++W  LL  C  +RN    E  AKKI++L PD    Y L+ N +
Sbjct: 462 EEAYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVAAKKILDLNPDDLGIYALVSNFF 521

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
                W+    +R +MK +G+KK+PG S +E N K
Sbjct: 522 SLARMWDRVSILRKIMKETGMKKVPGYSAVEVNGK 556



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 149/265 (56%), Gaps = 8/265 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +  + +  G   +V V SS++++Y KCG +DE+  VFDKM+K++ V  + ++ G
Sbjct: 122 LEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITG 181

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGC-K 116
             Q G+    + +FR M +  +   G+++    +ACA L  L+LG  VH   +RR     
Sbjct: 182 LVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMD 241

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DVI++++LVD+YAK G ++ A ++F QMP +N ++W ++ISGFAQNG  E AL +  +M 
Sbjct: 242 DVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQ 301

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               KPD    +  L ACS +G +  G+     + +  R+  ++     ++D+  + G L
Sbjct: 302 SLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVR--RLGFELVLGTALIDMYAKCGSL 359

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
             A  + +  D R D  LW  ++ +
Sbjct: 360 SCAHAIFDRVDSR-DVILWNTMIAS 383



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 139/286 (48%), Gaps = 8/286 (2%)

Query: 7   EVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++HA +IT GL   N      ++  Y + G +  +  +FDK+ ++   + +A++  Y + 
Sbjct: 25  QIHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRR 84

Query: 66  GDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
                V+ ++ +M     + D  +F + ++A + L  L  G+ +  + +      DV + 
Sbjct: 85  YHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVG 144

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           S++++LY KCG +D A  +F +M  R+++ W +MI+G  QNG   EA+ +F  M + G +
Sbjct: 145 SSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIE 204

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D V  +G++ AC+++G +  G        +   +   +     +VD+  + G LE A  
Sbjct: 205 GDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASR 264

Query: 242 LIENADCRHDSSLWEVLLG--ACTTFRNAHVAERVAKKIMELKPDC 285
           + E    R ++  W  L+   A   F    +   V  + +E KPD 
Sbjct: 265 VFEQMP-RKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDT 309


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/329 (37%), Positives = 198/329 (60%), Gaps = 7/329 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD---KMLKKNSVSSSALLQG 61
           G+++H +V+   L G+  V SSL+DMY KCGL++ +  VFD    + +  + + S ++ G
Sbjct: 263 GRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAG 322

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + +FR M       D F+   V  ACA +  +  G++VH    +     D
Sbjct: 323 YVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLD 382

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SA+VD+YAKCG ++ A  IF +   +N+  W SM+  +A +G+G  A+ +F+ MT 
Sbjct: 383 APLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTA 442

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+ ++ +GVLSACSH+GL+  G  +F  M +EY I P IEHYNC+VDL GR+GLL+
Sbjct: 443 EKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLD 502

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A+  IE  +  H++ +W+ LL AC   ++   A+  ++K+++L+     SYV+L N+Y 
Sbjct: 503 KAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYA 562

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
              +W+D F++R  M+   V+K PG+SWI
Sbjct: 563 TNNKWHDTFELRVSMQERKVRKQPGRSWI 591



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 161/318 (50%), Gaps = 46/318 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK VH  ++  G+  +VV+ ++++DMY KCG  + + RVF  M ++++VS +  +  
Sbjct: 128 VESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGA 187

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL-------RACAGLAALR-------------- 100
             Q+GD    +++F E    D  S+  ++        A   L+ LR              
Sbjct: 188 CIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTY 247

Query: 101 --------------LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP- 145
                         LG+++H + +  +   D  + S+L+D+Y KCG ++ A  +F     
Sbjct: 248 STAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSP 307

Query: 146 -VRNL-ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
             R++   W++M++G+ QNGR EEAL +F  M   G   D  +   V +AC+++G++++G
Sbjct: 308 LTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQG 367

Query: 204 RKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           R+    + K  Y++   +   + +VD+  + G LE+A ++ + A C  + ++W  +L  C
Sbjct: 368 RQVHGCVEKLWYKLDAPLA--SAIVDMYAKCGNLEDARSIFDRA-CTKNIAVWTSML--C 422

Query: 263 TTFRNAHVAERVAKKIME 280
           +    +H   R+A ++ E
Sbjct: 423 SY--ASHGQGRIAIELFE 438



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 47/244 (19%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLA 97
           VFD+   + +   +  + G  + G +   +R F EM        + F    V+R CAG+ 
Sbjct: 67  VFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMG 126

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM------------- 144
            +  GK VH   +R     DV++ +A++D+YAKCG  + A ++F  M             
Sbjct: 127 DVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIG 186

Query: 145 ------------------PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
                             P+R+  +WN++ISG  ++G   +AL     M + G   +H +
Sbjct: 187 ACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYT 246

Query: 187 FIGVLSACSHMGLIDRGRK-----HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           +         + L D GR+       A++  +  ++      + ++D+  + GLLE A +
Sbjct: 247 YSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVR------SSLMDMYCKCGLLEAAAS 300

Query: 242 LIEN 245
           + ++
Sbjct: 301 VFDH 304



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 12/166 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QG++VH  V  L    +  + S++VDMY KCG ++++  +FD+   KN    +++L  
Sbjct: 364 VEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCS 423

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y   G     I +F  M        EI L     VL AC+ +  +  G+    Q     G
Sbjct: 424 YASHGQGRIAIELFERMTAEKMTPNEITLVG---VLSACSHVGLVSEGELYFKQMQEEYG 480

Query: 115 CKDVIIE-SALVDLYAKCGCVDFAHQIFLQMPVRN-LITWNSMISG 158
               I   + +VDLY + G +D A     +  + +  I W +++S 
Sbjct: 481 IVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSA 526



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 3/127 (2%)

Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACS 195
           A  +F + P R    W   ISG A+ GR  + +R F +M  EG   P+      V+  C+
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
            MG ++ G++    M +   +   +   N ++D+  + G  E A  +   A    D+  W
Sbjct: 124 GMGDVESGKRVHGWMLRN-GVHLDVVLCNAVLDMYAKCGQFERARRVF-GAMAERDAVSW 181

Query: 256 EVLLGAC 262
            + +GAC
Sbjct: 182 NIAIGAC 188


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/314 (39%), Positives = 194/314 (61%), Gaps = 6/314 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+V  ++++  Y K   +  + ++FD++ KK+ +S S+++ GY Q   F   + IFR+M+
Sbjct: 253 NIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQ 312

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
               + D      V+ +CA L AL LGK VH +Y+RR+  K D I+E++L+D+Y KCG  
Sbjct: 313 RAKVKPDAIVIASVVSSCAHLGALDLGKWVH-EYVRRNNIKADTIMENSLIDMYMKCGSA 371

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
             A Q+F +M  ++ ++WNS+I G A NG  +E+L +F  M   G +P+ V+F+GVL AC
Sbjct: 372 KEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIAC 431

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           ++  L++ G  HF SM + Y ++P+++HY C+VDLLGRAG LE+A   I       D  +
Sbjct: 432 ANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVV 491

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W +LLG+C T  +  +AE V KK+ EL+P    +Y LL N Y +  RW++A  +R  M  
Sbjct: 492 WRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMAD 551

Query: 315 SGVKKMPGKSWIEA 328
           + V+K PG S +EA
Sbjct: 552 TDVRKSPGCSAVEA 565



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 36/294 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++H  +  LGL  ++ V +SL+ +Y  CG +  +  VFD+M+ K+ VS ++L+ G
Sbjct: 103 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICG 162

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGK------EVHC---- 107
           Y Q   F+ ++ +F+ M+    + D  +   V+ AC  L    +        E +C    
Sbjct: 163 YSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVD 222

Query: 108 --------QYIRRSG-------------CKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
                    Y  R G              ++++  +A++  YAK   +  A +IF Q+P 
Sbjct: 223 VYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPK 282

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           ++LI+W+SMISG++Q     +AL IF  M     KPD +    V+S+C+H+G +D G K 
Sbjct: 283 KDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG-KW 341

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
                +   IK      N ++D+  + G  +EA  + +    +   S   +++G
Sbjct: 342 VHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIG 395



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 161/319 (50%), Gaps = 12/319 (3%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYG--KCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           K +HA  I  GL       S ++  Y   +  LV  +H+VFD++    +   + L++G  
Sbjct: 5   KRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLV-FAHKVFDQIEAPTTFLWNILIRGLA 63

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q+      I  +++ +      D  +F  +L+ACA + AL  G+++H    +     D+ 
Sbjct: 64  QSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIF 123

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+ LYA CG + +A  +F +M V+++++WNS+I G++Q  R ++ L +F  M   G
Sbjct: 124 VSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEG 183

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            K D V+ I V+SAC+ +G       +     ++Y I+  +   N +VD  GR G L+ A
Sbjct: 184 VKADKVTMIKVVSACTRLGDYSMA-DYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSA 242

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
           E +  N   R+  ++   ++ A    ++   A ++  +I   K D  +S+  + + Y   
Sbjct: 243 EKVFFNMKVRNIVTM-NAMIAAYAKGQDIVSARKIFDQIP--KKDL-ISWSSMISGYSQA 298

Query: 300 GRWNDAFKIRTLMKYSGVK 318
             ++DA +I   M+ + VK
Sbjct: 299 NHFSDALEIFRQMQRAKVK 317



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH  V    +  + ++E+SL+DMY KCG   E+ +VF +M +K+++S ++++ G
Sbjct: 336 LDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIG 395

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  +  + +F+ M        G+    VL ACA    +  G + H + ++R    +
Sbjct: 396 LANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLD-HFESMKRLYSLE 454

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNG 163
             ++    +VDL  + G ++ A +   +MP+  + + W  ++     +G
Sbjct: 455 PQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHG 503


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 130/331 (39%), Positives = 203/331 (61%), Gaps = 8/331 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK++HA  I  GL  ++ + ++L+DMY KCG +  +  +F++  +K+ VS + L+ G
Sbjct: 438 LKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERS-EKDDVSYNTLILG 496

Query: 62  YCQTGD-FESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q+   FES++ +F++M  +    D  SF   L AC  L+  + GKE+HC  +RR    
Sbjct: 497 YSQSPWCFESLL-LFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSG 555

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + ++L+DLY K G +  A +IF ++  +++ +WN+MI G+  +G+ + A  +F+ M 
Sbjct: 556 HPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMK 615

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G   DHVS+I VL+ACSH GL+D+G+K+F+ M  +  I+P+  HY CMVDLLGRAG L
Sbjct: 616 GDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMHYACMVDLLGRAGQL 674

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            +   +I +     +S +W  LLGAC    N  +A+  A+ + ELKP+    Y L+ N+Y
Sbjct: 675 SKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMY 734

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
              GRWN+A KIR LMK   V+K P  SW++
Sbjct: 735 AETGRWNEANKIRKLMKSRKVQKNPAYSWVQ 765



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 150/263 (57%), Gaps = 8/263 (3%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G  +HA  + +GL   V + ++LVDMYGK G V+ S +VFD ML++N VS ++ +  +
Sbjct: 237 KFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCF 296

Query: 63  CQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G +  V+R+FR+M E ++    I    +L A   L +  LG+EVH   I+R+   D+
Sbjct: 297 LNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDI 356

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + ++LVD+YAK G ++ A  IF QM  RN+++WN+MI+   QNG   EA R+  DM + 
Sbjct: 357 FVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKS 416

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  P+ ++ + VL AC+ M  +  G++ H  S+ +       I   N ++D+  + G L 
Sbjct: 417 GECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFIS--NALIDMYSKCGQLS 474

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
            A  + E ++ + D S   ++LG
Sbjct: 475 LARNIFERSE-KDDVSYNTLILG 496



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 130/262 (49%), Gaps = 8/262 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G E+HA  +  G   +V   ++LV  Y  CG   ++ RVFD+M +++ VS ++L+  + 
Sbjct: 137 KGLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFL 196

Query: 64  QTGDFE----SVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             G F     +++ + R    +++ S   V+ AC      + G  +H   ++      V 
Sbjct: 197 VNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVN 256

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +ALVD+Y K G V+ + Q+F  M  +N ++WNS I  F   G   + LR+F  M+E  
Sbjct: 257 LANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHN 316

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             P  ++   +L A   +G  D GR+ H  S+ +   +   +   N +VD+  + G LE+
Sbjct: 317 VMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVA--NSLVDMYAKFGSLEK 374

Query: 239 AETLIENADCRHDSSLWEVLLG 260
           A T+ E    R+  S W  ++ 
Sbjct: 375 ASTIFEQMKDRNVVS-WNAMIA 395


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 201/363 (55%), Gaps = 35/363 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+E H  +   GL   V + ++L+DMY KCG ++ + ++FD M  K  VS + ++ G
Sbjct: 224 LDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVG 283

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV-------------------------------- 89
           Y Q+G  +   ++F EM + D+  +  +                                
Sbjct: 284 YAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTM 343

Query: 90  ---LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
              L AC+ L AL +G  +H    +     +V + +AL+D+YAKCG +  A Q+F ++P 
Sbjct: 344 VSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPG 403

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN +TW ++ISG A +G    A+  F +M +    PD V+F+G+LSAC H GL++ GRK+
Sbjct: 404 RNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKY 463

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F+ M+ ++ + PK++HY+CMVDLLGRAGLLEEAE LI++     D+ +W  L  AC    
Sbjct: 464 FSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHG 523

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  + ER A K++++ P     YVLL N+Y     W +A K R LM+  GV+K PG S I
Sbjct: 524 NVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSI 583

Query: 327 EAN 329
           E N
Sbjct: 584 EVN 586



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 152/308 (49%), Gaps = 43/308 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G E+   V+ LG   ++ V ++++ +   CG +D + ++FDK   ++ VS ++++ G
Sbjct: 123 IRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMING 182

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + G     +  +REM+    + D  +   V+ +CA L  L LG+E HC YI  +G K 
Sbjct: 183 YVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHC-YIEENGLKL 241

Query: 117 DVIIESALVDLYAKC-------------------------------GCVDFAHQIFLQMP 145
            V + +AL+D+Y KC                               G +D A ++F +MP
Sbjct: 242 TVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMP 301

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG-- 203
            ++++ WN+MI G+    RG+EAL +F++M      PD V+ +  LSACS +G +D G  
Sbjct: 302 DKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIW 361

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
             H+    +++ +   +     ++D+  + G + +A  + +    R +S  W  ++    
Sbjct: 362 IHHY---IEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLA 417

Query: 264 TFRNAHVA 271
              NAH A
Sbjct: 418 LHGNAHGA 425



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 133/254 (52%), Gaps = 14/254 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-----VDESHRVFDKMLKKNSVSSS 56
           + Q K++ ++++  GL  +    S L+     C +     +D    +       N+ S +
Sbjct: 19  ISQLKQIQSQMVLTGLIEDGFASSRLIAF---CAISEWRDLDYCTNILFNTRNPNTFSWN 75

Query: 57  ALLQGYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
             ++G+  + +    + +++ +      + D +++ ++ +ACA L+ +R+G E+    + 
Sbjct: 76  VAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLH 135

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                D+ + +A++ L   CG +D A ++F +  VR+L++WNSMI+G+ + G   EAL  
Sbjct: 136 LGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNF 195

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           + +M   G KPD V+ IGV+S+C+ +  +D GR+    + +E  +K  +   N ++D+  
Sbjct: 196 YREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYI-EENGLKLTVPLANALMDMYM 254

Query: 232 RAGLLEEAETLIEN 245
           + G LE A  L ++
Sbjct: 255 KCGNLESARKLFDS 268


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 197/366 (53%), Gaps = 39/366 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK VH  ++ +GL  ++ V +SL+ +YGKCG ++++ +VFD M  ++  S +ALL GY +
Sbjct: 190 GKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTK 249

Query: 65  TGDFESVIRIFREMEEIDLFSFGI------------------------------------ 88
           +G  ++ + IF  M   ++ S+                                      
Sbjct: 250 SGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIM 309

Query: 89  -VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF--LQMP 145
            VL ACA L+ L  G+++H    R     +  +  AL  +YAKCG +  A   F  L   
Sbjct: 310 SVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRN 369

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +NLI WN+MI+ +A  G G +A+  F +M + G +PD ++F G+LS CSH GL+D G K
Sbjct: 370 EKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLK 429

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +F  M+  Y I P++EHY C+ DLLGRAG L EA  L+         S+W  LL AC   
Sbjct: 430 YFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKH 489

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           RN  +AE  A+K+  L+P+   +YVLL N+Y   GRW +  K+R ++K  G KK PG SW
Sbjct: 490 RNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSW 549

Query: 326 IEANSK 331
           IE N K
Sbjct: 550 IEINGK 555



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 37/241 (15%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G +VHA ++  GL    +V S +V  Y   G +D S  VF+ + + +S+  +++++ 
Sbjct: 86  LKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRA 145

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  E  +  +  M       D F+F  VL++   L ++ +GK VH   +R     D
Sbjct: 146 YARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFD 205

Query: 118 VIIESALVDLYAKC-------------------------------GCVDFAHQIFLQMPV 146
           + + ++L+ LY KC                               GC+D A  IF +MP 
Sbjct: 206 LYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPW 265

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMT--EGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           RN+++W +MISG++Q+G  ++AL +FD+M   + G +P+ V+ + VL AC+ +  ++RGR
Sbjct: 266 RNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGR 325

Query: 205 K 205
           +
Sbjct: 326 Q 326



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 88/201 (43%), Gaps = 6/201 (2%)

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           +   +++++         + S+  V +   GL  L+LG +VH   + R      ++ S +
Sbjct: 52  SATLQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKM 111

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           V  YA  G +D +  +F  +   + + +NSMI  +A+ G  E  +  +  M   G   D+
Sbjct: 112 VAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDY 171

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAETL 242
            +F  VL +   +  +  G+     +    RI  + + Y    ++ L G+ G + +A  +
Sbjct: 172 FTFPFVLKSSVELLSVWMGKCVHGLI---LRIGLQFDLYVATSLIILYGKCGEINDAGKV 228

Query: 243 IENADCRHDSSLWEVLLGACT 263
            +N   R D S W  LL   T
Sbjct: 229 FDNMTIR-DVSSWNALLAGYT 248



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 80/166 (48%), Gaps = 10/166 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALL 59
           L++G+++H     +GL  N  V  +L  MY KCG + ++   FDK+ +  KN ++ + ++
Sbjct: 321 LERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMI 380

Query: 60  QGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
             Y   G     +  FREM +     D  +F  +L  C+    + +G + +  ++  +  
Sbjct: 381 TAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLK-YFNHMSTTYS 439

Query: 116 KDVIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            +  +E  + + DL  + G +  A ++  +MP+      W S+++ 
Sbjct: 440 INPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAA 485


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/335 (37%), Positives = 196/335 (58%), Gaps = 3/335 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VH  +    +  ++ V ++L+DMY KCG + ++H VF +M  K+ VS + ++ G
Sbjct: 368 LENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGG 427

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y +       + +F EM+   + +  +   +L ACA LAAL  G+E+H   +R     D 
Sbjct: 428 YSKNSLPNEALNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDR 487

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +ALVD+Y KCG +  A  +F  +P ++L++W  MI+G+  +G G EA+  F++M   
Sbjct: 488 HVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNS 547

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD VSFI +L ACSH GL+D G   F  M     I+PK EHY C+VDLL RAG L +
Sbjct: 548 GIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSK 607

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   I+      D+++W  LL  C  + +  +AE+VA+ + EL+P+    YVLL N+Y  
Sbjct: 608 AYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAE 667

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             +W +  K+R  +   G++K PG SWIE   K++
Sbjct: 668 AEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVH 702



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 149/263 (56%), Gaps = 11/263 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H   I       + + + L+DMY K G ++ + +VF+ M +++ VS ++++ GY +
Sbjct: 270 GRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAR 329

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVI 119
            G  +  +R+F EME+     D+F+   +L ACA    L  GK+VH  YI+ +  + D+ 
Sbjct: 330 EGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVH-NYIKENKMQSDLF 388

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+D+YAKCG +  AH +F +M V+++++WN+MI G+++N    EAL +F +M +  
Sbjct: 389 VSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYN 447

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           +KP+ ++   +L AC+ +  ++RG++ H   +   + +   +   N +VD+  + G L  
Sbjct: 448 SKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVA--NALVDMYLKCGALGL 505

Query: 239 AETLIENADCRHDSSLWEVLLGA 261
           A  L +      D   W V++  
Sbjct: 506 ARLLFDMIP-EKDLVSWTVMIAG 527



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 147/313 (46%), Gaps = 55/313 (17%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+ +H+ + +  +  + V+ S LV MY  CG + E  R+FDK+  +     + L+ G
Sbjct: 117 IQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNG 176

Query: 62  YCQTGDFESVIRIFREMEEI---------------------------------------- 81
           Y + G+F   + +F+ M E+                                        
Sbjct: 177 YAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGL 236

Query: 82  DLFS----FGI---------VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLY 128
           DLF      GI         V+  C+    L LG+ +H   I+ S  K++ + + L+D+Y
Sbjct: 237 DLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMY 296

Query: 129 AKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI 188
           +K G ++ A Q+F  M  R++++W SMI+G+A+ G  + ++R+F +M + G  PD  +  
Sbjct: 297 SKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTIT 356

Query: 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADC 248
            +L AC+  GL++ G K   +  KE +++  +   N ++D+  + G + +A ++      
Sbjct: 357 TILHACACTGLLENG-KDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQV 415

Query: 249 RHDSSLWEVLLGA 261
           + D   W  ++G 
Sbjct: 416 K-DIVSWNTMIGG 427



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 16/165 (9%)

Query: 62  YCQTGDFESVIRIFREMEEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           +C+ G+    + +  +  + DL   ++  VL+ CA L +++ G+ +H          D +
Sbjct: 78  FCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGV 137

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + S LV +Y  CG +    +IF ++    +  WN +++G+A+ G   E+L +F  M E G
Sbjct: 138 LGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELG 197

Query: 180 TK--------------PDHVSFIGVLSACSHMGLIDRGRKHFASM 210
            +               D +S+  ++S     GL ++G   F  M
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQM 242


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/320 (39%), Positives = 188/320 (58%), Gaps = 5/320 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N    ++++D Y +   V+ +  +F +M  ++ +S + ++  Y Q   F   + +F EM+
Sbjct: 106 NTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQ 165

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               + D  +   ++ ACA L AL LGKE+H   +      DV I SAL+D+YAKCG +D
Sbjct: 166 TNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLD 225

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            +  +F ++  +NL  WNS+I G A +G  EEAL +F  M     KP+ V+FI VL AC+
Sbjct: 226 KSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACT 285

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H GL++ GRK F SM++++ I P+IEHY CMVDLLG+AGLLE+A  L+ +     +S +W
Sbjct: 286 HAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIW 345

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLG C   RN  +A+    +   L+P+    Y LL N+Y  V RW++   IR  MK  
Sbjct: 346 GALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKEL 405

Query: 316 GVKKM-PGKSWIEANSKLNH 334
           GV+K  PG SWIE + K++ 
Sbjct: 406 GVEKTSPGSSWIEMDRKIHQ 425



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 123/236 (52%), Gaps = 38/236 (16%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VH  +   G   +V V+++LVD YG  G + E+ RVFD+M +++  + + ++  + +
Sbjct: 29  GEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHAR 88

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           TGD  S  ++F EM                               +R +   +     A+
Sbjct: 89  TGDMSSARQLFDEMP------------------------------VRNTASWN-----AM 113

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +D Y++   V+ A  +F QMP R++I+W +MI+ ++QN +  EAL +F++M   G  PD 
Sbjct: 114 IDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDE 173

Query: 185 VSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           V+   ++SAC+H+G +D G++ H  +M   + +   I   + ++D+  + G L+++
Sbjct: 174 VTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIG--SALIDMYAKCGSLDKS 227



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+H   + +G   +V + S+L+DMY KCG +D+S  VF K+ KKN    +++++G
Sbjct: 189 LDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEG 248

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  E  + +F  M+   +   G+    VL AC     +  G++      R      
Sbjct: 249 LAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPP 308

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            I     +VDL  K G ++ A ++   M +  N + W +++ G
Sbjct: 309 EIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGG 351


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/336 (37%), Positives = 200/336 (59%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L + KE+H   I  GL  + V++++++D+YG+CG++D + R+F+ +  K+ VS ++++  
Sbjct: 378 LGKIKEIHGYTIRGGL-SDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISC 436

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     + +F  M+E     D  +   +L A   L+ L+ GKE+H   IR+    +
Sbjct: 437 YVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILE 496

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I + LVD+YA+CG V+ A++IF     RNLI W +MIS +  +G GE A+ +F  M +
Sbjct: 497 GSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKD 556

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               PDH++F+ +L ACSH GL++ G+     M  EY+++P  EHY C+VDLLGR   LE
Sbjct: 557 EKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLE 616

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  ++++        +W  LLGAC    N  + E  A+K++EL  D   +YVL+ NV+ 
Sbjct: 617 EAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFA 676

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A GRW D  ++R  MK SG+ K PG SWIE  +K++
Sbjct: 677 ANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIH 712



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 128/235 (54%), Gaps = 7/235 (2%)

Query: 30  MYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI----DLFS 85
           MYGKCG V ++  +FDKM +++  + +A++ GY   G+    + ++REM  +    D ++
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           F ++L+AC  +  L  G E+H   I+      V + ++LV LYAKC  ++ A ++F +M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 146 VRN-LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           VRN +++WNS+IS ++ NG   EAL +F +M + G   +  +F   L AC     I  G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +  A++ K  R+   +   N +V +  R G + EA  +  N + + D   W  +L
Sbjct: 181 QIHAAILKSGRV-LDVYVANALVAMYVRFGKMPEAAVIFGNLEGK-DIVTWNSML 233



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 5/213 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SALLQGYC 63
           G E+H   I  G    V V +SLV +Y KC  ++ + ++FD+M  +N V S ++++  Y 
Sbjct: 77  GAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYS 136

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             G     + +F EM +     + ++F   L+AC   + ++LG ++H   ++     DV 
Sbjct: 137 GNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVY 196

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +ALV +Y + G +  A  IF  +  ++++TWNSM++GF QNG   EAL  F D+    
Sbjct: 197 VANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNAD 256

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            KPD VS I ++ A   +G +  G++  A   K
Sbjct: 257 LKPDQVSIISIIVASGRLGYLLNGKEIHAYAIK 289



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 150/304 (49%), Gaps = 13/304 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G ++HA ++  G   +V V ++LV MY + G + E+  +F  +  K+ V+ +++L G
Sbjct: 176 IKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTG 235

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G +   +  F +++  DL     S   ++ A   L  L  GKE+H   I+     +
Sbjct: 236 FIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSN 295

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +++ + L+D+YAKC C+ +  + F  M  ++LI+W +  +G+AQN    +AL +   +  
Sbjct: 296 ILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQM 355

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G   D      +L AC  +  + + ++      +     P ++  N ++D+ G  G+++
Sbjct: 356 EGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQ--NTIIDVYGECGIID 413

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNV 295
            A  + E+ +C+ D   W  ++        A+ A  V   + E  L+PD    YV L ++
Sbjct: 414 YAVRIFESIECK-DVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPD----YVTLVSI 468

Query: 296 YRAV 299
             AV
Sbjct: 469 LSAV 472



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           +Y KCG V  A  IF +M  R++ TWN+M+ G+  NG    AL ++ +M   G   D  +
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
           F  +L AC  +  +  G +    +  +Y     +   N +V L  +   +  A  L +  
Sbjct: 61  FPVLLKACGIVEDLFCGAE-IHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 247 DCRHDSSLWEVLLGA 261
             R+D   W  ++ A
Sbjct: 120 YVRNDVVSWNSIISA 134


>gi|15228119|ref|NP_181269.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216847|sp|Q9ZUT4.1|PP192_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37320
 gi|4056486|gb|AAC98052.1| hypothetical protein [Arabidopsis thaliana]
 gi|37202040|gb|AAQ89635.1| At2g37320 [Arabidopsis thaliana]
 gi|51969760|dbj|BAD43572.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254289|gb|AEC09383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 126/334 (37%), Positives = 206/334 (61%), Gaps = 6/334 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            + G   H   +  G   +V + SSLV +Y   G V+ +++VF++M ++N VS +A++ G
Sbjct: 136 FRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISG 195

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q    +  ++++ +M     + + ++F  +L AC G  AL  G+ VHCQ +       
Sbjct: 196 FAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSY 255

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD-DMT 176
           + I ++L+ +Y KCG +  A +IF Q   +++++WNSMI+G+AQ+G   +A+ +F+  M 
Sbjct: 256 LHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMP 315

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + GTKPD ++++GVLS+C H GL+  GRK F  M  E+ +KP++ HY+C+VDLLGR GLL
Sbjct: 316 KSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMA-EHGLKPELNHYSCLVDLLGRFGLL 374

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA  LIEN   + +S +W  LL +C    +     R A++ + L+PDC  ++V L N+Y
Sbjct: 375 QEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRAAEERLMLEPDCAATHVQLANLY 434

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
            +VG W +A  +R LMK  G+K  PG SWIE N+
Sbjct: 435 ASVGYWKEAATVRKLMKDKGLKTNPGCSWIEINN 468



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 130/281 (46%), Gaps = 17/281 (6%)

Query: 44  FDKMLKKNSVSS---SALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALR 100
           FD    KN VSS     +L+        +S   + R+    D +     +R+C      R
Sbjct: 86  FDLSRTKNGVSSVLEEVMLE--------DSSSSVKRDGWSFDAYGLSSAVRSCGLNRDFR 137

Query: 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFA 160
            G   HC  ++     DV + S+LV LY   G V+ A+++F +MP RN+++W +MISGFA
Sbjct: 138 TGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFA 197

Query: 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI 220
           Q  R +  L+++  M +  + P+  +F  +LSAC+  G + +GR      T    +K  +
Sbjct: 198 QEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGRS-VHCQTLHMGLKSYL 256

Query: 221 EHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
              N ++ +  + G L++A  + +    + D   W  ++        A  A  + + +M 
Sbjct: 257 HISNSLISMYCKCGDLKDAFRIFDQFSNK-DVVSWNSMIAGYAQHGLAMQAIELFELMMP 315

Query: 281 ---LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
               KPD  ++Y+ + +  R  G   +  K   LM   G+K
Sbjct: 316 KSGTKPDA-ITYLGVLSSCRHAGLVKEGRKFFNLMAEHGLK 355


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 197/341 (57%), Gaps = 8/341 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+ +H+  I LG   ++   ++ + MY K      +  +FD M  +  VS + ++ G
Sbjct: 272 LTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISG 331

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + GD +  + +F  M    E+ DL +   ++  C    +L  GK +  +     GCK 
Sbjct: 332 YAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDAR-ADIYGCKR 390

Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +V+I +AL+D+Y+KCG +  A  IF   P + ++TW +MI+G+A NG   EAL++F  M
Sbjct: 391 DNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKM 450

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            +   KP+H++F+ VL AC+H G +++G ++F  M + Y I P ++HY+CMVDLLGR G 
Sbjct: 451 IDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGK 510

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           LEEA  LI N   + D+ +W  LL AC   RN  +AE+ A+ +  L+P     YV + N+
Sbjct: 511 LEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANI 570

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
           Y A G W+   +IR++MK   +KK PG+S I+ N K NH  
Sbjct: 571 YAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGK-NHSF 610



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 16/222 (7%)

Query: 74  IFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129
           +FREM+    E + F+F  V +ACA LA +   + VH   I+     DV + +A VD++ 
Sbjct: 39  LFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFV 98

Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
           KC  VD+A ++F +MP R+  TWN+M+SGF Q+G  ++A  +F +M      PD V+ + 
Sbjct: 99  KCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMT 158

Query: 190 VLSACSHMGLIDRGRKHFASMTK---EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
           ++ + S     ++  K   +M        +  ++   N  +   G+ G L+ A+ + E  
Sbjct: 159 LIQSAS----FEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAI 214

Query: 247 DCRHDSSL--WEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
           D R D ++  W  +  A + F  A  A  +   ++  E KPD
Sbjct: 215 D-RGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPD 255



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 109/203 (53%), Gaps = 6/203 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VHA +I      +V V ++ VDM+ KC  VD + +VF++M ++++ + +A+L G+CQ+G 
Sbjct: 74  VHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGH 133

Query: 68  FESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            +    +FREM   EI  D  +   ++++ +   +L+L + +H   IR      V + + 
Sbjct: 134 TDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANT 193

Query: 124 LVDLYAKCGCVDFAHQIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
            +  Y KCG +D A  +F  +    R +++WNSM   ++  G   +A  ++  M     K
Sbjct: 194 WISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFK 253

Query: 182 PDHVSFIGVLSACSHMGLIDRGR 204
           PD  +FI + ++C +   + +GR
Sbjct: 254 PDLSTFINLAASCQNPETLTQGR 276



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 121/251 (48%), Gaps = 6/251 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALL 59
           LK  + +HA  I LG+   V V ++ +  YGKCG +D +  VF+ + +  +  VS +++ 
Sbjct: 169 LKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMF 228

Query: 60  QGYCQTGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           + Y   G+    F     + RE  + DL +F  +  +C     L  G+ +H   I     
Sbjct: 229 KAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTD 288

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +D+   +  + +Y+K      A  +F  M  R  ++W  MISG+A+ G  +EAL +F  M
Sbjct: 289 QDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAM 348

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G KPD V+ + ++S C   G ++ G+   A        +  +   N ++D+  + G 
Sbjct: 349 IKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGS 408

Query: 236 LEEAETLIENA 246
           + EA  + +N 
Sbjct: 409 IHEARDIFDNT 419


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 211/368 (57%), Gaps = 37/368 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H + I LGL  ++ V + LVD+Y + G V  + ++FDKM +++ VS + +L  
Sbjct: 157 LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTC 216

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI--------------------------------- 88
           Y + G+ +    +F  M+E D+  + +                                 
Sbjct: 217 YSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTV 276

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             VL AC  L AL  G+ +H  YI   G + +V + +AL+D+Y+KCG ++ A  +F ++ 
Sbjct: 277 LAVLSACGQLGALESGRWIH-SYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIR 335

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            ++++ WNSMI G+A +G  + AL++F++MTE G KP  ++FIG+LSAC H GL++ GR 
Sbjct: 336 DKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRS 395

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F  M  +Y I+PKIEHY CMV+LLGRAG LEEA  L++N     D  LW  LLG C   
Sbjct: 396 FFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLH 455

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  + E +AK +++ K     +YVLL N+Y A G W    K+RTLMK  G++K  G S 
Sbjct: 456 VNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSS 515

Query: 326 IEANSKLN 333
           IE ++K++
Sbjct: 516 IEVDNKVH 523



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 40/273 (14%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++HA ++  GL  N ++   L   Y   G +D S  VF+   + N  S SA++  + Q+ 
Sbjct: 65  QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124

Query: 67  DFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
            F+     + +M     E + F+F  VL++C+    L  GK +HCQ I+     D+ + +
Sbjct: 125 LFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDLYVRT 180

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLIT------------------------------- 151
            LVD+YA+ G V  A Q+F +MP R+L++                               
Sbjct: 181 GLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVC 240

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
           WN MI G+AQ+G   E+L++F  M      P+ V+ + VLSAC  +G ++ GR    S  
Sbjct: 241 WNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGR-WIHSYI 299

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           +   I+  +     ++D+  + G LE+A  + +
Sbjct: 300 ENKGIQINVHVGTALIDMYSKCGSLEDARLVFD 332


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 131/334 (39%), Positives = 199/334 (59%), Gaps = 4/334 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+VH  ++  GL G V V++SLVDMY KCGL +++ ++F     ++ V+ + ++ G
Sbjct: 315 LDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMG 374

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             +  +FE     F    RE  E D  S+  +  A A +AAL  G  +H   ++    K+
Sbjct: 375 CFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKN 434

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I S+LV +Y KCG +  A+Q+F +    N++ W +MI+ F Q+G   EA+++F++M  
Sbjct: 435 SRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLN 494

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P++++F+ VLSACSH G ID G K+F SM   + IKP +EHY CMVDLLGR G LE
Sbjct: 495 EGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLE 554

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA   IE+     DS +W  LLGAC    N  +   VA+++ +L+PD   +Y+LL N+Y 
Sbjct: 555 EACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYI 614

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
             G   +A ++R LM  +GV+K  G SWI+  ++
Sbjct: 615 RHGMLEEADEVRRLMGINGVRKESGCSWIDVKNR 648



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 137/272 (50%), Gaps = 10/272 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KKNSVSSSALL 59
           LK   ++H++++T     ++   ++L+ +Y KCG +  +  +F+       N V+ + L+
Sbjct: 113 LKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLI 172

Query: 60  QGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
               ++      +  F  M    +    F+F  +L ACA  A L  G+++H    +    
Sbjct: 173 NQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFL 232

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D  + +AL+D+YAKCG +  A  +F +MP RNL++WNSMI GF +N     A+ +F ++
Sbjct: 233 NDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREV 292

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  PD VS   VLSAC+ +  +D G++   S+ K   +   +   N +VD+  + GL
Sbjct: 293 LSLG--PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVG-LVYVKNSLVDMYCKCGL 349

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
            E+A  L      R D   W V++  C   RN
Sbjct: 350 FEDATKLFCGGGDR-DVVTWNVMIMGCFRCRN 380



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 156/314 (49%), Gaps = 15/314 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++HA +       +  V ++L+DMY KCG +  +  VFD+M  +N VS ++++ G
Sbjct: 216 LSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVG 275

Query: 62  YCQTGDFESVIRIFREMEEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           + +   +   I +FRE+  +  D  S   VL ACAGL  L  GK+VH   ++R     V 
Sbjct: 276 FVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVY 335

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           ++++LVD+Y KCG  + A ++F     R+++TWN MI G  +    E+A   F  M   G
Sbjct: 336 VKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREG 395

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK-PKIEHYNCMVDLLGRAGLLEE 238
            +PD  S+  +  A + +  + +G    + + K   +K  +I   + +V + G+ G + +
Sbjct: 396 VEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRIS--SSLVTMYGKCGSMLD 453

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL-----KPDCHLSYVLLD 293
           A  +       H+   W  ++   T F     A    K   E+      P+ ++++V + 
Sbjct: 454 AYQVFRETK-EHNVVCWTAMI---TVFHQHGCANEAIKLFEEMLNEGVVPE-YITFVSVL 508

Query: 294 NVYRAVGRWNDAFK 307
           +     G+ +D FK
Sbjct: 509 SACSHTGKIDDGFK 522



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF--LQMPV 146
           +L   A L +L+   ++H Q +  +    +   + L+ LYAKCG +     +F     P 
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
            N++TW ++I+  +++ +  +AL  F+ M   G  P+H +F  +L AC+H  L+  G++ 
Sbjct: 163 TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQI 222

Query: 207 FASMTKE-YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            A + K  +   P +     ++D+  + G +  AE + +    R+  S W  ++      
Sbjct: 223 HALIHKHCFLNDPFVA--TALLDMYAKCGSMLLAENVFDEMPHRNLVS-WNSMIVGFVKN 279

Query: 266 RNAHVAERVAKKIMELKPD 284
           +    A  V ++++ L PD
Sbjct: 280 KLYGRAIGVFREVLSLGPD 298


>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
          Length = 435

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 126/313 (40%), Positives = 195/313 (62%), Gaps = 5/313 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  ++++D Y + G VD++ ++FD+M +++ +S +A++ G+ + G  E  +  FREM+
Sbjct: 82  NSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQ 141

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               + D  +    L AC  L AL  G  +H   + +    +V + ++L+DLY +CGCV+
Sbjct: 142 ISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVE 201

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           FA Q+F +M  R +++WNS+I GFA NG   E+L  F  M E G KP+ V+F G L+AC+
Sbjct: 202 FARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGALAACN 261

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H+GL++ G ++F SM ++YRI P+IEHY C+VDL  RAG LE+A  ++++   + +  + 
Sbjct: 262 HVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVI 321

Query: 256 EVLLGACTTFRNAHV-AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
             LL AC T  N  V AERV K + +L    H +YV+L N+Y A G+W  A K+R  MK 
Sbjct: 322 GSLLAACRTQGNNTVLAERVMKHLSDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKG 381

Query: 315 SGVKKMPGKSWIE 327
            G+KK PG S IE
Sbjct: 382 LGLKKEPGFSSIE 394



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 10/175 (5%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K+ +  + ++D Y + G VD A ++F +MP R+LI+W +MI+GF + G  EEAL  F +M
Sbjct: 81  KNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREM 140

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G KPD+V+ I  L+AC+++G +  G   H   ++++++   ++   N ++DL  R G
Sbjct: 141 QISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVS--NSLIDLYCRCG 198

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA--KKIME--LKPDC 285
            +E A  + +  + R   S   V++G      N H  E +   +K+ E   KP+ 
Sbjct: 199 CVEFARQVFDKMEKRTVVSWNSVIVGFAA---NGHAHESLVYFRKMQEEGFKPNA 250



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 7/152 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  +H  V++     NV V +SL+D+Y +CG V+ + +VFDKM K+  VS ++++ G
Sbjct: 165 LSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVG 224

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     +  FR+M+E     +  +F   L AC  +  +  G   + Q ++R     
Sbjct: 225 FAANGHAHESLVYFRKMQEEGFKPNAVTFTGALAACNHVGLVEEGLR-YFQSMKRDYRIS 283

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR 147
             IE    LVDLY++ G ++ A ++   MP++
Sbjct: 284 PRIEHYGCLVDLYSRAGRLEDALKVVQSMPMK 315


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/337 (37%), Positives = 198/337 (58%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQ 60
           L QG  +H  ++ LG   +  V+++L+DMY KCG +  +  +F+K    K+ V+ + ++ 
Sbjct: 547 LDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIA 606

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y Q G  +  I  F +M       +  +F  VL A A LAA R G   H   I+     
Sbjct: 607 AYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLS 666

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           + ++ ++L+D+YAKCG + ++ ++F +M  ++ ++WN+M+SG+A +G G+ A+ +F  M 
Sbjct: 667 NTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQ 726

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           E   + D VSF+ VLSAC H GL++ GRK F SM+ +Y IKP +EHY CMVDLLGRAGL 
Sbjct: 727 ESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLF 786

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +E    I+      D+ +W  LLG+C    N  + E     +++L+P     +V+L ++Y
Sbjct: 787 DETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIY 846

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              GRW DA K R+ M   G+KK PG SW+E  +K++
Sbjct: 847 AQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVH 883



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 146/278 (52%), Gaps = 7/278 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GKE+H   +   +  +++V + L+ MY KCG  +++ ++F  +  ++ V+ SA++  
Sbjct: 345 LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             QTG  E  + +F+EM+   +     +   +L ACA L+ L+LGK +HC  ++     D
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +   +ALV +YAKCG    A   F +M  R+++TWNS+I+G+AQ G    A+ +F  +  
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               PD  + +GV+ AC+ +  +D+G      + K    +      N ++D+  + G L 
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVK-LGFESDCHVKNALIDMYAKCGSLP 583

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA 275
            AE L    D   D   W V++ A    +N H  E ++
Sbjct: 584 SAEFLFNKTDFTKDEVTWNVIIAA--YMQNGHAKEAIS 619



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 23  VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME--- 79
           V + L+D+Y KCG VD + RVFD+M+ ++ VS   ++ GY   G F  V+ +F +M+   
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 80  -EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
             I+  S      A A    L  GKE+H   +++    D+++ + L+ +YAKCG  + A 
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAK 384

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           Q+F  +  R+L+ W+++I+   Q G  EEAL +F +M     KP+ V+ + +L AC+ + 
Sbjct: 385 QLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLS 444

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
           L+  G K     T +  +   +     +V +  + G    A T       R D   W  L
Sbjct: 445 LLKLG-KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSL 502

Query: 259 L 259
           +
Sbjct: 503 I 503



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 8/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G   H ++   GL  +V + + LVDMY K G +  +  VFDKM K++ V+ +A++ G
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG 204

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q+ D    +  FR M+    E    S   +      L+ + L + +H    RR     
Sbjct: 205 LSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA 264

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   + L+DLY+KCG VD A ++F QM  ++ ++W +M++G+A NG   E L +FD M  
Sbjct: 265 V--SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL 322

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  + + VS +    A +    +++G++      ++ RI   I     ++ +  + G  E
Sbjct: 323 GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQ-RIDSDILVATPLMVMYAKCGETE 381

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           +A+ L      R D   W  ++ A
Sbjct: 382 KAKQLFWGLQGR-DLVAWSAIIAA 404



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 127/259 (49%), Gaps = 10/259 (3%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++HA++I  G   +  + + L+++Y      D +  VFD     + +  +++++ Y ++ 
Sbjct: 50  QIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK 108

Query: 67  DFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
            +   + ++  M E     D ++F  VL+AC G   L+ G   H +  RR   +DV I +
Sbjct: 109 QYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGA 168

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
            LVD+Y+K G +  A ++F +MP R+++ WN+MI+G +Q+    EA+  F  M   G +P
Sbjct: 169 GLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEP 228

Query: 183 DHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
             VS + +      +  I+  R  H     +++         N ++DL  + G ++ A  
Sbjct: 229 SSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVS----NGLIDLYSKCGDVDVARR 284

Query: 242 LIENADCRHDSSLWEVLLG 260
           + +    + D S   ++ G
Sbjct: 285 VFDQMVDQDDVSWGTMMAG 303


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/334 (37%), Positives = 194/334 (58%), Gaps = 3/334 (0%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L +G++VH  +    +   + V ++L+DMY KCG ++E++ VF ++  K+ VS + ++ G
Sbjct: 771  LDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGG 830

Query: 62   YCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Y +       +++F EM++    D  +   +L AC  LAAL +G+ +H   +R     ++
Sbjct: 831  YSKNSLPNEALKLFAEMQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSEL 890

Query: 119  IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
             + +AL+D+Y KCG +  A  +F  +P ++LITW  MISG   +G G EA+  F  M   
Sbjct: 891  HVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIA 950

Query: 179  GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
            G KPD ++F  +L ACSH GL++ G   F SM  E  ++PK+EHY CMVDLL R G L +
Sbjct: 951  GIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSK 1010

Query: 239  AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
            A  LIE    + D+++W  LL  C    +  +AE+VA+ + EL+PD    YVLL N+Y  
Sbjct: 1011 AYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAE 1070

Query: 299  VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
              +W +  K+R  +   G+KK PG SWIE   K 
Sbjct: 1071 AEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKF 1104



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 162/291 (55%), Gaps = 13/291 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H + +       V+  ++L+DMY KCG ++++ + F+KM +K  VS ++L+  
Sbjct: 670 LSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAA 729

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G ++  IR+F EME      D++S   VL ACA   +L  G++VH  YIR++    
Sbjct: 730 YVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVH-NYIRKNNMAL 788

Query: 118 VI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            + + +AL+D+YAKCG ++ A+ +F Q+PV+++++WN+MI G+++N    EAL++F +M 
Sbjct: 789 CLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM- 847

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
           +  ++PD ++   +L AC  +  ++ GR  H   +   Y    ++   N ++D+  + G 
Sbjct: 848 QKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGY--SSELHVANALIDMYVKCGS 905

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTT--FRNAHVAERVAKKIMELKPD 284
           L  A  L +      D   W V++  C      N  +A     +I  +KPD
Sbjct: 906 LVHARLLFDMIP-EKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPD 955



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 151/289 (52%), Gaps = 7/289 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+ + K +H  V  LG      V +SL+  Y K G VD +H++FD++  ++ VS ++++ 
Sbjct: 568 RVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMIS 627

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G    G   S +  F +M      +DL +    + ACA + +L LG+ +H Q ++    +
Sbjct: 628 GCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSR 687

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V+  + L+D+Y+KCG ++ A Q F +M  + +++W S+I+ + + G  ++A+R+F +M 
Sbjct: 688 EVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEME 747

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  PD  S   VL AC+    +D+GR    +  ++  +   +   N ++D+  + G +
Sbjct: 748 SKGVSPDVYSMTSVLHACACGNSLDKGRD-VHNYIRKNNMALCLPVSNALMDMYAKCGSM 806

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV-AKKIMELKPD 284
           EEA  +      + D   W  ++G  +     + A ++ A+   E +PD
Sbjct: 807 EEAYLVFSQIPVK-DIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRPD 854



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 8/244 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK VH+ + + G+    V+ + LV MY  CG + E  R+FD +L  N V    L+  
Sbjct: 467 LQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMS 526

Query: 62  -YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVH-CQYIRRSGC 115
            Y + GD+   I +F++M+++ +    ++F  +L+  A L  +   K +H C Y    G 
Sbjct: 527 EYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGS 586

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            + ++ S L+  Y K G VD AH++F ++  R++++WNSMISG   NG    AL  F  M
Sbjct: 587 YNTVVNS-LIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQM 645

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                  D  + +  ++AC+++G +  GR       K      ++   N ++D+  + G 
Sbjct: 646 LILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKAC-FSREVMFNNTLLDMYSKCGN 704

Query: 236 LEEA 239
           L +A
Sbjct: 705 LNDA 708



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 15/218 (6%)

Query: 62  YCQTGDFESVIRIFR--EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DV 118
           +C+ GD  + + + R  +  E+DL ++  +L+ CA    L+ GK VH   I  +G   + 
Sbjct: 428 FCEVGDLRNAVELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVH-SVISSNGIPIEG 486

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRN-LITWNSMISGFAQNGRGEEALRIFDDMTE 177
           ++ + LV +Y  CG +    +IF  +   N +  WN M+S +A+ G   E++ +F  M +
Sbjct: 487 VLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQK 546

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL----GRA 233
            G   +  +F  +L   + +G +   ++    +      K     YN +V+ L     ++
Sbjct: 547 LGITGNSYTFSCILKCFATLGRVGECKRIHGCV-----YKLGFGSYNTVVNSLIATYFKS 601

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
           G ++ A  L +    R D   W  ++  C     +H A
Sbjct: 602 GEVDSAHKLFDELGDR-DVVSWNSMISGCVMNGFSHSA 638


>gi|413925046|gb|AFW64978.1| hypothetical protein ZEAMMB73_457124 [Zea mays]
          Length = 592

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/317 (40%), Positives = 192/317 (60%), Gaps = 5/317 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           + K G+  H+ V+  G   N  + SSL+ MY KCGLV+++ +VF  M ++N V  ++++ 
Sbjct: 75  KAKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMIS 134

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q G F+  + +FR+M+    + D  +   V+ +CA + AL LG+ VH         K
Sbjct: 135 GYTQLGKFKKAVDLFRDMQITGMKADDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGK 194

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ ++++L+D+Y+KCG +  AH+IF  +  R++ +W +MI GF  NG   EAL +F  M 
Sbjct: 195 ELSVKNSLIDMYSKCGDITKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQME 254

Query: 177 -EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            EG   P+ V+F+GVL++CSH GL+++G  HF  M+  Y + P+IEHY CMVDLLGRA L
Sbjct: 255 GEGKVMPNEVTFLGVLTSCSHGGLVEQGFHHFQRMSMVYNLAPRIEHYGCMVDLLGRAKL 314

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L EAE  I       D  +W  LL AC       +AE VA++I+EL+P     +VLL NV
Sbjct: 315 LTEAEQFINGMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPKKCAGHVLLSNV 374

Query: 296 YRAVGRWNDAFKIRTLM 312
           Y A  RW D  K+RT M
Sbjct: 375 YAATSRWVDVNKLRTSM 391



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 17/225 (7%)

Query: 30  MYGKCGLVDESHRVFDKMLKK--NSVSSSALLQGYCQTGDFESVIRIFREMEE----IDL 83
           MY  C     + +V D   +   ++VS + ++ GY + G     ++ F +M +    +D 
Sbjct: 1   MYSSCSYPTTARQVLDSAPQGACDTVSWNTIISGYLRCGMPNKALQAFGQMVKEPVRLDD 60

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
            +    L A A     ++G+  H   +      +  + S+L+ +YAKCG V+ A ++F  
Sbjct: 61  VTLLNALVASAKAGKAKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHG 120

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           M  RN++ W SMISG+ Q G+ ++A+ +F DM   G K D  +   V+S+C+ MG +D G
Sbjct: 121 MHERNVVCWTSMISGYTQLGKFKKAVDLFRDMQITGMKADDGTIATVVSSCAQMGALDLG 180

Query: 204 RKHFA-----SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
           R   A      + KE  +K      N ++D+  + G + +A  + 
Sbjct: 181 RYVHAYCDVHGLGKELSVK------NSLIDMYSKCGDITKAHEIF 219


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 208/370 (56%), Gaps = 39/370 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--------------------------- 34
           L  G+++H  VI  GL  +  V S+++DMYGK                            
Sbjct: 268 LNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITG 327

Query: 35  ----GLVDESHRVF----DKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EID 82
               GLVD++  +F    ++ ++ N VS ++++ G  Q G     + +FREM+    + +
Sbjct: 328 LSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPN 387

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
             +   +L AC  +AAL  G+  H   +R     DV + SAL+D+YAKCG +  +  +F 
Sbjct: 388 RVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFN 447

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            MP +NL+ WNS+++G++ +G+ +E + IF+ +     KPD +SF  +LSAC  +GL D 
Sbjct: 448 MMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDE 507

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           G K+F  M++EY IKP++EHY+CMV+LLGRAG L+EA  LI+      DS +W  LL +C
Sbjct: 508 GWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSC 567

Query: 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
               N  +AE  A+K+  L+P+   +YVL+ N+Y A G W +   IR  M+  G+KK PG
Sbjct: 568 RLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPG 627

Query: 323 KSWIEANSKL 332
            SWI+  +K+
Sbjct: 628 CSWIQVKNKV 637



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 165/387 (42%), Gaps = 79/387 (20%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K GK++H      GL  +  V+ SL  MY +CG + ++ +VFD+M +K+ V+ SALL G
Sbjct: 132 FKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCG 191

Query: 62  YCQTGDFESVIRIFREMEE---------------------------------------ID 82
           Y + G  E V+RI  EME+                                        D
Sbjct: 192 YARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPD 251

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC----------- 131
             +   VL +      L +G+++H   I++   KD  + SA++D+Y K            
Sbjct: 252 QVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFD 311

Query: 132 --------------------GCVDFAHQIF----LQMPVRNLITWNSMISGFAQNGRGEE 167
                               G VD A ++F     Q    N+++W S+I+G AQNG+  E
Sbjct: 312 EFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIE 371

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
           AL +F +M   G KP+ V+   +L AC ++  +  GR       + + +   +   + ++
Sbjct: 372 ALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD-DVHVGSALI 430

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDC 285
           D+  + G ++ ++ ++ N     +   W  L+   +    A     + + +M   LKPD 
Sbjct: 431 DMYAKCGRIKMSQ-IVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPD- 488

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLM 312
            +S+  L +    VG  ++ +K   +M
Sbjct: 489 FISFTSLLSACGQVGLTDEGWKYFNMM 515



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 99/201 (49%), Gaps = 14/201 (6%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           + HA+++  G   +  + + L+  Y      +++  +   +      S S+L+    +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 67  DFESVIRIFREMEEIDLFSFGIV---------LRACAGLAALRLGKEVHCQYIRRSGCKD 117
            F   I +F  M     FS G++          + CA L+A + GK++HC         D
Sbjct: 96  LFSQSIGVFSRM-----FSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMD 150

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             ++ +L  +Y +CG +  A ++F +M  ++++T ++++ G+A+ G  EE +RI  +M +
Sbjct: 151 AFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEK 210

Query: 178 GGTKPDHVSFIGVLSACSHMG 198
            G +P+ VS+ G+LS  +  G
Sbjct: 211 SGIEPNIVSWNGILSGFNRSG 231


>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 128/364 (35%), Positives = 201/364 (55%), Gaps = 35/364 (9%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA+ + +GL   V V S+++D Y K    +E+   F+ + K N VS + L+ GY +
Sbjct: 118 GKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHGYLK 177

Query: 65  TGDFESVIRIFREMEE----------------------IDLF-------------SFGIV 89
            G  +  +++F+EM E                      + LF             +F   
Sbjct: 178 KGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCA 237

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           + + A +A+L +GK  H   ++     DV + ++LV  YAKCG ++ +  +F ++P RN 
Sbjct: 238 ITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNT 297

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ++WN++I GFAQNGRGE+A+  F+ M   G +P+ V+ +G+L AC+H GL+++G  +F  
Sbjct: 298 VSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLLGLLCACNHAGLVEKGYMYFNQ 357

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           M +E     K EHY CMVDLL R G L+EA   + +      +  W+ LLG C    NA 
Sbjct: 358 MRQEEPGILKPEHYACMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLGGCHIHSNAE 417

Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           +++  A+KI+ L P+   SYV+L N Y A GRW     IR  MK  G+K++PG SWIE  
Sbjct: 418 LSDLAAQKILALDPEDVSSYVMLSNAYSAAGRWQQVSTIRREMKEKGLKRIPGCSWIEVR 477

Query: 330 SKLN 333
           SK++
Sbjct: 478 SKIH 481



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 120/259 (46%), Gaps = 39/259 (15%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRA 92
           VDE   +FD+M + + +S + L+  + +   +E  + +F  M  +++    F+F  V+ +
Sbjct: 52  VDE---LFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHS 108

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC--------------------- 131
             GL  + LGK++H + ++      V + SA++D YAK                      
Sbjct: 109 STGLKNIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSY 168

Query: 132 ----------GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
                     G +D A Q+F +MP RN+++WN+M+ GF+Q G  EEA+ +F +M   G  
Sbjct: 169 TTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFM 228

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+  +F   +++ ++M  +  G+   A   K       +   N +V    + G +E++  
Sbjct: 229 PNQSTFPCAITSAANMASLGMGKSFHACAVKSL-CTSDVFVCNSLVSFYAKCGSMEDSLL 287

Query: 242 LIENADCRHDSSLWEVLLG 260
           +      R+  S   V+ G
Sbjct: 288 VFNELPDRNTVSWNAVICG 306



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK  HA  +      +V V +SLV  Y KCG +++S  VF+++  +N+VS +A++ G
Sbjct: 247 LGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICG 306

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL 90
           + Q G  E  +  F  M    L    + L
Sbjct: 307 FAQNGRGEDAVIFFERMRAAGLRPNSVTL 335


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 208/370 (56%), Gaps = 39/370 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCG-------------------------- 35
           L  G+ +H  VI  GL  +  V S+++DMYGK G                          
Sbjct: 268 LNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITG 327

Query: 36  -----LVDESHRVFD----KMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EID 82
                LVD++  +F+    + ++ N VS ++++ G  Q G     + +FREM+    + +
Sbjct: 328 LSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPN 387

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
             +   +L AC  +AAL  G+  H   +R     +V + SAL+D+YAKCG ++ +  +F 
Sbjct: 388 HVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFN 447

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            MP +NL+ WNS+++GF+ +G+ +E + IF+ +     KPD +SF  +LSAC  +GL D 
Sbjct: 448 MMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDE 507

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           G K+F  M++EY IKP++EHY+CMV+LLGRAG L+EA  LI+      DS +W  LL +C
Sbjct: 508 GWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSC 567

Query: 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
               N  +AE  A+K+  L+P+   +YVLL N+Y A G W +   IR  M+  G+KK PG
Sbjct: 568 RLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPG 627

Query: 323 KSWIEANSKL 332
            SWI+  +++
Sbjct: 628 CSWIQVKNRV 637



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 166/387 (42%), Gaps = 79/387 (20%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K GK++H      GL  +  V+ S+  MY +CG + ++ +VFD+M  K+ V+ SALL  
Sbjct: 132 FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCA 191

Query: 62  YCQTGDFESVIRIFREME----EIDLFSF-GI---------------------------- 88
           Y + G  E V+RI  EME    E ++ S+ GI                            
Sbjct: 192 YARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPD 251

Query: 89  ------VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC----------- 131
                 VL +      L +G+ +H   I++   KD  + SA++D+Y K            
Sbjct: 252 QVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFN 311

Query: 132 --------------------GCVDFAHQIF----LQMPVRNLITWNSMISGFAQNGRGEE 167
                               G VD A ++F     Q    N+++W S+I+G AQNG+  E
Sbjct: 312 QFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE 371

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
           AL +F +M   G KP+HV+   +L AC ++  +  GR       + + +   +   + ++
Sbjct: 372 ALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALI 430

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDC 285
           D+  + G +  ++ ++ N     +   W  L+   +    A     + + +M   LKPD 
Sbjct: 431 DMYAKCGRINLSQ-IVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD- 488

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLM 312
            +S+  L +    VG  ++ +K   +M
Sbjct: 489 FISFTSLLSACGQVGLTDEGWKYFKMM 515



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 120/272 (44%), Gaps = 50/272 (18%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           + HA+++  G   +  + + L+  Y      +++  V   +      S S+L+    +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 67  DFESVIRIFREMEEIDLFSFGIV---------LRACAGLAALRLGKEVHC---------- 107
            F   I +F  M     FS G++          + CA L+A ++GK++HC          
Sbjct: 96  LFTQSIGVFSRM-----FSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD 150

Query: 108 ---------QYIR------------RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
                     Y+R            R   KDV+  SAL+  YA+ GC++   +I  +M  
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES 210

Query: 147 R----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
                N+++WN ++SGF ++G  +EA+ +F  +   G  PD V+   VL +     +++ 
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNM 270

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           GR     + K+  +K K    + M+D+ G++G
Sbjct: 271 GRLIHGYVIKQGLLKDKCV-ISAMIDMYGKSG 301


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 199/330 (60%), Gaps = 5/330 (1%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           EVHA+V+      +  V ++L+D Y K G VDE+ +VF  +  K+ V+ SA+L GY Q G
Sbjct: 418 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAG 477

Query: 67  DFESVIRIFREMEE----IDLFSFGIVLRACAGL-AALRLGKEVHCQYIRRSGCKDVIIE 121
           + E+ I+IF E+ +     + F+F  +L  CA   A++  GK+ H   I+      + + 
Sbjct: 478 ETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVS 537

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SAL+ +YAK G ++ A ++F +   ++L++WNSMISG+AQ+G+  +AL +F +M +   K
Sbjct: 538 SALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 597

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D V+FIGV +AC+H GL++ G K+F  M ++ +I P  EH +CMVDL  RAG LE+A  
Sbjct: 598 MDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 657

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           +I+N      S++W  +L AC   +   +    A+KI+ + P+   +YVLL N+Y   G 
Sbjct: 658 VIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGD 717

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           W +  K+R LM    VKK PG SWIE  +K
Sbjct: 718 WQERAKVRKLMNERNVKKEPGYSWIEVKNK 747



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 131/248 (52%), Gaps = 9/248 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQ 60
           L+  +++H  V+  G   +  + ++L+  Y KC  + ++ R+F +     N VS +A++ 
Sbjct: 315 LRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMIS 374

Query: 61  GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+ Q    E  + +F EM+   +    F++ ++L A   ++      EVH Q ++ +  +
Sbjct: 375 GFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYER 430

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + +AL+D Y K G VD A ++F  +  ++++ W++M++G+AQ G  E A++IF ++T
Sbjct: 431 SSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELT 490

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +GG KP+  +F  +L+ C+         K F     + R+   +   + ++ +  + G +
Sbjct: 491 KGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHI 550

Query: 237 EEAETLIE 244
           E AE + +
Sbjct: 551 ESAEEVFK 558



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 145/289 (50%), Gaps = 15/289 (5%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G +VH  V+  GL   + V +SL+++Y KCG V ++  +FDK   K+ V+ ++++ GY 
Sbjct: 216 RGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYA 275

Query: 64  QTG-DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
             G D E+ + +F  M      +   SF  +++ CA L  LR  +++HC  ++     D 
Sbjct: 276 ANGLDLEA-LGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQ 334

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            I +AL+  Y+KC  +  A ++F +   + N+++W +MISGF QN   EEA+ +F +M  
Sbjct: 335 NIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKR 394

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P+  ++  +L+A   + +I     H   +   Y     +     ++D   + G ++
Sbjct: 395 KGVRPNEFTYSVILTA---LPVISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVD 449

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           EA  +    D + D   W  +L           A ++  ++ +  +KP+
Sbjct: 450 EAAKVFSGIDNK-DIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPN 497



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 105/197 (53%), Gaps = 4/197 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H + I  G   +V V +SLVD Y K     +   VFD+M ++N V+ + L+ GY +
Sbjct: 116 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYAR 175

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               E V+ +F  M+    + + F+F   L   A       G +VH   ++    K + +
Sbjct: 176 NSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 235

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L++LY KCG V  A  +F +  V++++TWNSMISG+A NG   EAL +F  M     
Sbjct: 236 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHV 295

Query: 181 KPDHVSFIGVLSACSHM 197
           +    SF  ++  C+++
Sbjct: 296 RLSESSFASIIKLCANL 312



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 109/214 (50%), Gaps = 5/214 (2%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAG 95
           +H +FDK   ++  S ++LL G+ + G  +   R+F  ++    E+D   F  VL+  A 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
           L     G+++HCQ I+     DV + ++LVD Y K         +F +M  RN++TW ++
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215
           ISG+A+N   EE L +F  M + GT+P+  +F   L   +  G+  RG +    + K   
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN-G 228

Query: 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
           +   I   N +++L  + G + +A  L +  + +
Sbjct: 229 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 262



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 9/151 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + QGK+ H   I   L  ++ V S+L+ MY K G ++ +  VF +  +K+ VS ++++ G
Sbjct: 515 MGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISG 574

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + +F+EM+    ++D  +F  V  AC     +  G++     +R   CK 
Sbjct: 575 YAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVR--DCKI 632

Query: 118 VIIE---SALVDLYAKCGCVDFAHQIFLQMP 145
              +   S +VDLY++ G ++ A ++   MP
Sbjct: 633 APTKEHNSCMVDLYSRAGQLEKAMKVIDNMP 663



 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           +AH +F + P R+  ++ S++ GF+++GR +EA R+F ++   G + D   F  VL   +
Sbjct: 49  YAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSA 108

Query: 196 HM 197
            +
Sbjct: 109 TL 110


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/319 (40%), Positives = 195/319 (61%), Gaps = 9/319 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NV+  +++V  Y  CG ++E+  +F+    ++ V  +A++ GY Q   F+  + +FREM+
Sbjct: 303 NVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQ 362

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
               + D F    +L  CA   A+  GK +H ++I  +    D ++ +AL+++YAKCG +
Sbjct: 363 IRKVKPDKFIVVSLLTGCAQTGAIEQGKWIH-EFIDENRIPIDAVVGTALIEMYAKCGFI 421

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           + A +IF  + V++  +W S+I G A NG+  +AL +F  M + G +PD ++FIGVLSAC
Sbjct: 422 EKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSAC 481

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS-- 252
           SH GL++ GRK F SM  EY+IKPK+EHY C+VDLLGRAGLL EAE LI+     + +  
Sbjct: 482 SHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAIT 541

Query: 253 -SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311
             L+  LL AC  + N  + ERVAK++++ +      + LL N+Y    RW D  K+R  
Sbjct: 542 VPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRK 601

Query: 312 MKYSGVKKMPGKSWIEANS 330
           MK  GVKK PG S IE +S
Sbjct: 602 MKDLGVKKTPGCSSIEVDS 620



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 147/320 (45%), Gaps = 39/320 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + + +++   V   GL  +  V +SL+DMY +  L D    +FD+M  ++ +S + ++ G
Sbjct: 153 VSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISG 212

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y +   FE  I +F  M+E      D  +    L AC  L  L LGK++H  Y+R +   
Sbjct: 213 YVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIH-HYVRDNVKF 271

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP------------------------------- 145
             II +AL+D+Y KCGC+  A  +F +MP                               
Sbjct: 272 TPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSP 331

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +R+++ W +MI+G+ Q  R +EA+ +F +M     KPD    + +L+ C+  G I++G K
Sbjct: 332 IRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQG-K 390

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
                  E RI         ++++  + G +E+A  +      +  +S   ++ G     
Sbjct: 391 WIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNG 450

Query: 266 RNAHVAERVAK-KIMELKPD 284
           + +   E  +K K   ++PD
Sbjct: 451 KTSKALELFSKMKQAGVRPD 470



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 87/189 (46%), Gaps = 20/189 (10%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC-----GCVDFAHQIFLQM 144
           L++C  +  L   K++H Q  R    +D++   +L  L A C     G +++A ++F  +
Sbjct: 44  LKSCKSMTHL---KQIHAQIFRVGLHQDIV---SLNKLMAFCTDPFNGNLNYAEKMFKYI 97

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
               L+ +N +I  FA+ G  +  L +F  + E G  PD+ ++  V  A  ++G + +  
Sbjct: 98  RYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAE 157

Query: 205 KHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA- 261
           K    +TK      + + Y  N ++D+  +  L +  + L +    R D   W V++   
Sbjct: 158 KLRGLVTK---TGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDR-DVISWNVMISGY 213

Query: 262 --CTTFRNA 268
             C  F +A
Sbjct: 214 VKCRRFEDA 222


>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
          Length = 613

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 208/363 (57%), Gaps = 50/363 (13%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVF---------------- 44
           RL++G++VH   +  GL  +  V S++V MY  CG+++++HR+F                
Sbjct: 104 RLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKK 163

Query: 45  ------------------------------DKMLKKNSVSSSALLQGYCQTGDFESVIRI 74
                                         D+M +++ VS + ++ GY Q+G F+  + +
Sbjct: 164 RRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEV 223

Query: 75  FREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130
           FREM+  ++     +   VL A + L AL LGK VH   +R +   D ++ SAL+D+YAK
Sbjct: 224 FREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAK 283

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
           CG ++ A Q+F  +P RN++TW+++I+G A +GR ++ L  F+DM   G  P  V++IG+
Sbjct: 284 CGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGL 343

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
           LSACSH GL++ GR  F  M +   ++P+IEHY CMVDLLGRAGLLEE+E LI N   + 
Sbjct: 344 LSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKP 403

Query: 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310
           D  +W+ LLGAC    N  + +RVA+ +MEL P    SYV L N+Y ++G W    K+R 
Sbjct: 404 DDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRL 463

Query: 311 LMK 313
           +MK
Sbjct: 464 MMK 466



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 136/309 (44%), Gaps = 56/309 (18%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGL--VDESHRVFDKMLKKNSVSSSALLQGYC 63
           K++HA++I      + +  + L+          +D + ++F  M + N  S + L++   
Sbjct: 5   KQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALS 64

Query: 64  QTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           ++ D    + +F EM E      + F+F  V +AC     LR G++VH   ++     D 
Sbjct: 65  ESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDE 124

Query: 119 IIESALVDLYAKCGCVDFAHQIFL------------------------------------ 142
            + S +V +Y  CG ++ AH++F                                     
Sbjct: 125 FVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIG 184

Query: 143 ----------QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
                     +MP R++++WN MI+G+AQ+G  +EA+ +F +M      P++V+ + VL 
Sbjct: 185 ELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLP 244

Query: 193 ACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           A S +G ++ G+  H  ++     +   +   + ++D+  + G +E+A  + E    R+ 
Sbjct: 245 AMSRLGALELGKWVHLYAVRNNIGVDDVLG--SALIDMYAKCGSIEKALQVFEGLPKRNV 302

Query: 252 SSLWEVLLG 260
            +   ++ G
Sbjct: 303 VTWSTIIAG 311



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 113/238 (47%), Gaps = 8/238 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH   +   +  + V+ S+L+DMY KCG ++++ +VF+ + K+N V+ S ++ G
Sbjct: 252 LELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAG 311

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  +  +  F +ME   +    +    +L AC+    +  G+      +R SG + 
Sbjct: 312 LAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEP 371

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
            I     +VDL  + G ++ + ++ L MP++ + + W +++     +G  E   R+ + +
Sbjct: 372 RIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHL 431

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            E     D  S++ + +  + +G  + G      M KE  +  +    +   D+L  A
Sbjct: 432 MELAPH-DSGSYVALSNIYASLGNWE-GVAKVRLMMKEMDVSARWHPEDACXDMLEEA 487


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/313 (39%), Positives = 184/313 (58%), Gaps = 5/313 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NVV+ + +VD Y + G +  +  +FD+M +++ VS + ++ GY Q G ++  I IF  M 
Sbjct: 198 NVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMM 257

Query: 80  EI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
           ++     +  +   VL A + L  L LGK VH    +     D ++ SALVD+YAKCG +
Sbjct: 258 QMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSI 317

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           + A Q+F ++P  N+ITWN++I G A +G+  +       M + G  P  V++I +LSAC
Sbjct: 318 EKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSAC 377

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           SH GL+D GR  F  M     +KPKIEHY CMVDLLGRAG LEEAE LI N   + D  +
Sbjct: 378 SHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVI 437

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W+ LLGA    +N  +  R A+ +M++ P    +YV L N+Y + G W+    +R +MK 
Sbjct: 438 WKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKD 497

Query: 315 SGVKKMPGKSWIE 327
             ++K PG SWIE
Sbjct: 498 MDIRKDPGCSWIE 510



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 150/316 (47%), Gaps = 60/316 (18%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESH--RVFDKMLKKNSVSSSALL 59
           +++ K+VHA ++  G   +  + + ++ +       D  +   VFD++ ++N  + + ++
Sbjct: 28  MRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVI 87

Query: 60  QGYCQTGDFE-SVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR-- 111
           +   +T D     + +F +M      E + F+F  VL+ACA +A L  GK+VH   ++  
Sbjct: 88  RALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFG 147

Query: 112 --------------------------------------RSGCKD-------VIIESALVD 126
                                                 R+  +D       V++ + +VD
Sbjct: 148 LVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVD 207

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE-GGTKPDHV 185
            YA+ G +  A ++F +M  R++++WN MISG+AQNG  +EA+ IF  M + G   P+ V
Sbjct: 208 GYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRV 267

Query: 186 SFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           + + VL A S +G+++ G+  H  +   + RI   +   + +VD+  + G +E+A  + E
Sbjct: 268 TLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLG--SALVDMYAKCGSIEKAIQVFE 325

Query: 245 NADCRHDSSLWEVLLG 260
               +++   W  ++G
Sbjct: 326 RLP-QNNVITWNAVIG 340


>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
          Length = 491

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/313 (40%), Positives = 192/313 (61%), Gaps = 5/313 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  ++++D Y + G VD + ++FDKM +++ +S +A++ G+ + G  E  +  FREM+
Sbjct: 130 NSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQ 189

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 D  +    L AC  L AL  G  VH   + +    +V + ++L+DLY +CGCV+
Sbjct: 190 ISGVRPDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVE 249

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           FA ++F +M  R +++WNS+I GFA NG   E+L  F  M E G KPD V+F G L+ACS
Sbjct: 250 FAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACS 309

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H+GL++ G ++F +M ++Y I P+IEHY C+VDL  RAG LE+A  +IE+   + +  + 
Sbjct: 310 HVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMPMKPNEVVI 369

Query: 256 EVLLGACTTFRNAHV-AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
             LL AC T  N  V AER+ K + +L    H +YV+L N+Y A G+W  A ++R  MK 
Sbjct: 370 GSLLAACRTHGNNTVLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASQMRRKMKG 429

Query: 315 SGVKKMPGKSWIE 327
            G+KK PG S IE
Sbjct: 430 LGLKKQPGFSSIE 442



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 7/152 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VH  V+      NV V +SL+D+Y +CG V+ +  VFDKM K+  VS ++++ G
Sbjct: 213 LSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVG 272

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G+    +  FR+M+E     D  +F   L AC+ +  +  G   + Q ++R     
Sbjct: 273 FAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLR-YFQTMKRDYGIS 331

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR 147
             IE    LVDLY++ G ++ A ++   MP++
Sbjct: 332 PRIEHYGCLVDLYSRAGRLEDALKVIESMPMK 363



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           Q      ++W S I+   +NGR  EA + F DM   G +P+H++FI +LS C   G    
Sbjct: 21  QSTSETTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGC---GDFPS 77

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMV 227
           G +  +++   Y  K  ++  + MV
Sbjct: 78  GSETLSNLLHGYACKLGLDRTHVMV 102


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/337 (37%), Positives = 199/337 (59%), Gaps = 8/337 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + QG+ +H  VI  G    +++ +SL+D+Y KCG +D+  +VF  M   + +S + ++  
Sbjct: 438 INQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIAS 497

Query: 62  YCQTGDFESVIRIFREMEEIDLFS-----FGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
                D     ++  EM    L        GI L  C+ LA  R GKE+H  YI +SG +
Sbjct: 498 SVHFDDCTVGFQMINEMRTEGLMPDEATVLGI-LPMCSLLAVRRQGKEIH-GYIFKSGFE 555

Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +V I +AL+++Y+KCG ++   ++F  M  ++++TW ++IS F   G G++AL+ F DM
Sbjct: 556 SNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDM 615

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  PD V+FI  + ACSH G++  G + F  M  +Y ++P++EHY C+VDLL R+GL
Sbjct: 616 ELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGL 675

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L +AE  I +   + D+SLW  LL AC    N ++A+RV+KKI+EL  D    YVL+ N+
Sbjct: 676 LAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNI 735

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           Y  +G+W+    +R  MK  G+KK PG SWIE   ++
Sbjct: 736 YATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRV 772



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 161/313 (51%), Gaps = 21/313 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VH   + +G   ++ + ++L+DMY +   +D +  VF++M  ++SVS ++L+ G
Sbjct: 137 LELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISG 196

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           YC  G +E  + ++ +        D F+   VL AC  L A++ G  VH    +     D
Sbjct: 197 YCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGD 256

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           VII + L+ +Y K   +  A ++F +M V++ +TWN+MI G+AQ GR E ++++F DM +
Sbjct: 257 VIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID 316

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE----HYNCMVDLLGRA 233
           G   PD +S    + AC   G +  G+        +Y I    E      N ++D+  + 
Sbjct: 317 GFV-PDMLSITSTIRACGQSGDLQVGK-----FVHKYLIGSGFECDTVACNILIDMYAKC 370

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTT---FRNAHVAERVAKKIMELKPDCHLSYV 290
           G L  A+ + +   C+ DS  W  L+   T    ++    + ++ K  ME KPD  +++V
Sbjct: 371 GDLLAAQEVFDTTKCK-DSVTWNSLINGYTQSGYYKEGLESFKMMK--MERKPD-SVTFV 426

Query: 291 LLDNVYRAVGRWN 303
           LL +++  +   N
Sbjct: 427 LLLSIFSQLADIN 439



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 158/289 (54%), Gaps = 10/289 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K+G  VH  +  +G+ G+V++ + L+ MY K   + E+ RVF KM  K+SV+ + ++ G
Sbjct: 238 VKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICG 297

Query: 62  YCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-D 117
           Y Q G  E+ +++F +M +    D+ S    +RAC     L++GK VH +Y+  SG + D
Sbjct: 298 YAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVH-KYLIGSGFECD 356

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            +  + L+D+YAKCG +  A ++F     ++ +TWNS+I+G+ Q+G  +E L  F  M +
Sbjct: 357 TVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMK 415

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+F+ +LS  S +  I++GR     + K +  + ++   N ++D+  + G ++
Sbjct: 416 MERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIK-FGFEAELIIGNSLLDVYAKCGEMD 474

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           +   +       HD   W  ++ +   F +  V  ++  ++    L PD
Sbjct: 475 DLLKVFSYMSA-HDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPD 522



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 149/297 (50%), Gaps = 12/297 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH  +I  G   + V  + L+DMY KCG +  +  VFD    K+SV+ ++L+ G
Sbjct: 338 LQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLING 397

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y Q+G ++  +  F+ M+   + D  +F ++L   + LA +  G+ +HC  I+     ++
Sbjct: 398 YTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAEL 457

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           II ++L+D+YAKCG +D   ++F  M   ++I+WN++I+            ++ ++M   
Sbjct: 458 IIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTE 517

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  PD  + +G+L  CS + +  +G++    + K    +  +   N ++++  + G LE 
Sbjct: 518 GLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS-GFESNVPIGNALIEMYSKCGSLEN 576

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
              + +      D   W  L+ A   +          KK ++   D  LS VL D+V
Sbjct: 577 CIKVFKYMK-EKDVVTWTALISAFGMYGE-------GKKALKAFQDMELSGVLPDSV 625



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 5/205 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SALLQGY 62
           Q + VH+ +IT GL  +V+    L+  Y +      S  VF  +   N+V   +++++  
Sbjct: 37  QLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRAL 96

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G F   +  + EM E     D F+F  V+ +CA +  L LG  VH   +      D+
Sbjct: 97  THNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDL 156

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            I +AL+D+Y++   +D A  +F +M  R+ ++WNS+ISG+  NG  E+AL ++      
Sbjct: 157 YIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMT 216

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRG 203
           G  PD  +   VL AC  +  +  G
Sbjct: 217 GMVPDCFTMSSVLLACGSLMAVKEG 241


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 126/337 (37%), Positives = 198/337 (58%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-NSVSSSALLQ 60
           L QG ++H+ +I +GL     V +SL+ MY KC  + ++  VF  + +  N VS +A+L 
Sbjct: 399 LNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILS 458

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
              Q        R+F+ M     + D  +   +L  CA L +L +G +VHC  ++     
Sbjct: 459 ACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVV 518

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV + + L+D+YAKCG +  A  +F      ++++W+S+I G+AQ G G+EAL +F  M 
Sbjct: 519 DVSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMR 578

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P+ V+++GVLSACSH+GL++ G   + +M  E  I P  EH +CMVDLL RAG L
Sbjct: 579 NLGVQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCL 638

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE  I+      D ++W+ LL +C T  N  +AER A+ I++L P    + VLL N++
Sbjct: 639 YEAENFIKKTGFDPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIH 698

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            + G W +  ++R LMK  GV+K+PG+SWIE   +++
Sbjct: 699 ASAGNWKEVARLRNLMKQMGVQKVPGQSWIEVKDQIH 735



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 139/278 (50%), Gaps = 10/278 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK +H  ++      ++V+++ +++MYGKCG + ++ + FD M  ++ VS + ++ G
Sbjct: 96  LKYGKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISG 155

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     I ++ +M       D  +FG +++AC     + LG ++H   I+      
Sbjct: 156 YSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHH 215

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
           +I ++AL+ +Y K G +  A  +F  +  ++LI+W SMI+GF Q G   EAL +F DM  
Sbjct: 216 LIAQNALISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFR 275

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +G  +P+   F  V SAC  +   + GR+    M  ++ +   +     + D+  + G L
Sbjct: 276 QGVYQPNEFIFGSVFSACRSLLKPEFGRQ-IQGMCAKFGLGRNVFAGCSLCDMYAKFGFL 334

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
             A+      +   D   W  ++ A     N+ V E +
Sbjct: 335 PSAKRAFYQIESP-DLVSWNAIIAA---LANSDVNEAI 368



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 140/291 (48%), Gaps = 17/291 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H  VI  G   +++ +++L+ MY K G +  +  VF  +  K+ +S ++++ G+ Q
Sbjct: 200 GGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQ 259

Query: 65  TGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            G     + +FR+M      + + F FG V  AC  L     G+++     +    ++V 
Sbjct: 260 LGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVF 319

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
              +L D+YAK G +  A + F Q+   +L++WN++I+  A N    EA+  F  M   G
Sbjct: 320 AGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALA-NSDVNEAIYFFCQMIHMG 378

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRAGL 235
             PD ++F+ +L AC     +++G +        Y IK  ++      N ++ +  +   
Sbjct: 379 LMPDDITFLNLLCACGSPMTLNQGMQ-----IHSYIIKMGLDKVAAVCNSLLTMYTKCSN 433

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
           L +A  + ++     +   W  +L AC+  +    A R+ K ++  E KPD
Sbjct: 434 LHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPD 484



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 123/256 (48%), Gaps = 31/256 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +     I +G C N +      D YG+          +D       +S+++ +   C+
Sbjct: 9   GTKTRQAPIHIGSCWNRIQS---CDAYGES---------YDTNYHGGELSTNSYINLMCK 56

Query: 65  TGDFESVIRIFR-----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DV 118
              +   +  F         +++  ++  ++ AC  + +L+ GK +H  +I +S C+ D+
Sbjct: 57  QQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIH-DHILKSNCQPDL 115

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++++ ++++Y KCG +  A + F  M +R++++W  MISG++QNG+  +A+ ++  M   
Sbjct: 116 VLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRS 175

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRAG 234
           G  PD ++F  ++ AC   G ID G +        + IK   +H+    N ++ +  + G
Sbjct: 176 GYFPDQLTFGSIIKACCIAGDIDLGGQ-----LHGHVIKSGYDHHLIAQNALISMYTKFG 230

Query: 235 LLEEAE---TLIENAD 247
            +  A    T+I   D
Sbjct: 231 QIAHASDVFTMISTKD 246


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 205/337 (60%), Gaps = 7/337 (2%)

Query: 3   KQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           K  + VH  ++  G L  +VV+ +++VDMY K GL+D +H+VF+ +  K+ +S + L+ G
Sbjct: 434 KNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITG 493

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q G     I +++ MEE      +  ++  +L A A + AL+ G ++H + I+ +   
Sbjct: 494 YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHL 553

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV + + L+D+Y KCG +  A  +F Q+P  + +TWN++IS    +G  E+ L++F +M 
Sbjct: 554 DVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEML 613

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G KPDHV+F+ +LSACSH G ++ G+  F  M +EY IKP ++HY CMVDLLGRAG L
Sbjct: 614 DEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYL 672

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           E A   I++   + D+S+W  LLGAC    N  + +  + ++ E+       YVLL N+Y
Sbjct: 673 EMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIY 732

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             VG+W    K+R+L +  G+KK PG S IE N K++
Sbjct: 733 ANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVD 769



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 125/244 (51%), Gaps = 17/244 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            K +HA ++  G   ++ + + LV++Y   G V  S   FD++ +K+  + ++++  Y  
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 194

Query: 65  TGDFESVIRIFREM---EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            G F   I  F ++    EI  D ++F  VL+AC  L     G+++HC   +     +V 
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVF 251

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+ +Y++ G    A  +F  MP R++ +WN+MISG  QNG   +AL + D+M   G
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 311

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGL 235
            K + V+ + +L  C  +G I       A +   Y IK  +E      N ++++  + G 
Sbjct: 312 IKMNFVTVVSILPVCPQLGDIST-----AMLIHLYVIKHGLEFDLFVSNALINMYAKFGN 366

Query: 236 LEEA 239
           LE+A
Sbjct: 367 LEDA 370



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 140/314 (44%), Gaps = 9/314 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+++H     LG   NV V +SL+ MY + G    +  +FD M  ++  S +A++ G
Sbjct: 231 LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISG 290

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G+    + +  EM     +++  +   +L  C  L  +     +H   I+     D
Sbjct: 291 LIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFD 350

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+++YAK G ++ A + F QM + ++++WNS+I+ + QN     A   F  M  
Sbjct: 351 LFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQL 410

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PD ++ + + S  +        R     + +   +   +   N +VD+  + GLL+
Sbjct: 411 NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLD 470

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK---PDCHLSYVLLDN 294
            A  + E    + D   W  L+        A  A  V K + E K   P+   ++V +  
Sbjct: 471 SAHKVFEIIPVK-DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPN-QGTWVSILP 528

Query: 295 VYRAVGRWNDAFKI 308
            Y  VG      KI
Sbjct: 529 AYAHVGALQQGMKI 542



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 82/151 (54%), Gaps = 6/151 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG ++H +VI   L  +V V + L+D+YGKCG + ++  +F ++ +++SV+ +A++  
Sbjct: 536 LQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISC 595

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G  E  +++F EM +     D  +F  +L AC+    +  GK    + ++  G K 
Sbjct: 596 HGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKP 654

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR 147
            +     +VDL  + G ++ A+     MP++
Sbjct: 655 SLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQ 685


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 200/342 (58%), Gaps = 16/342 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             + + +H  V+  GL  +  V+++L+DMY + G +D + R+F KM  ++ V+ + ++ G
Sbjct: 417 FSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITG 476

Query: 62  YCQTGDFESVIRIFREME---------------EIDLFSFGIVLRACAGLAALRLGKEVH 106
           Y  +   E  + +  +M+               + +  +   +L +CA L+AL  GKE+H
Sbjct: 477 YVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIH 536

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
              I+ +   DV + SALVD+YAKCGC+  + ++F Q+P+RN+ITWN ++  +  +G  +
Sbjct: 537 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQ 596

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           +A+ +   M   G KP+ V+FI V +ACSH G+++ G K F +M K+Y ++P  +HY C+
Sbjct: 597 DAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACV 656

Query: 227 VDLLGRAGLLEEAETLIENADCRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285
           VDLLGRAG ++EA  LI       D +  W  LLGAC    N  + E  A+ +++L+P+ 
Sbjct: 657 VDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNV 716

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
              YVLL N+Y + G W  A ++R  MK  GV+K PG SWIE
Sbjct: 717 ASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIE 758



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 164/331 (49%), Gaps = 22/331 (6%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L+ GKE+HA  +  G L  N  V S+LVDMY  C  V    RVFD M  +     +A++ 
Sbjct: 314 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMIT 373

Query: 61  GYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           GY Q    E  + +F EMEE      +  +   V+ AC    A    + +H   ++R   
Sbjct: 374 GYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLD 433

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +D  +++AL+D+Y++ G +D A +IF +M  R+L+TWN++I+G+  + R E+AL +   M
Sbjct: 434 RDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKM 493

Query: 176 -----------TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
                      +    KP+ ++ + +L +C+ +  + +G++  A   K   +   +   +
Sbjct: 494 QILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGS 552

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELK 282
            +VD+  + G L+ +  + +    R+  + W V++ A     N+  A  + + +M   +K
Sbjct: 553 ALVDMYAKCGCLQMSRKVFDQIPIRNVIT-WNVIVMAYGMHGNSQDAIDMLRMMMVQGVK 611

Query: 283 PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           P+  ++++ +       G  N+  KI   MK
Sbjct: 612 PN-EVTFISVFAACSHSGMVNEGLKIFYNMK 641



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 115/216 (53%), Gaps = 9/216 (4%)

Query: 5   GKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           GK++HA V   G    +V V ++LV++Y KCG     ++VFD++ ++N VS ++L+   C
Sbjct: 112 GKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLC 171

Query: 64  QTGDFESVIRIFREM--EEIDLFSFGIV--LRACAGLA---ALRLGKEVHCQYIRRSGCK 116
               +E  +  FR M  E+++  SF +V    AC+       L +GK+VH   +R+    
Sbjct: 172 SFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELN 231

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
             II + LV +Y K G +  +  +      R+L+TWN+++S   QN +  EAL    +M 
Sbjct: 232 SFIINT-LVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMV 290

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
             G +PD  +   VL ACSH+ ++  G++  A   K
Sbjct: 291 LEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALK 326



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 9/209 (4%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQ-YIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
           D F+F  +L+A A L  + LGK++H   Y    G   V + + LV+LY KCG     +++
Sbjct: 92  DNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 151

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F ++  RN ++WNS+IS      + E AL  F  M +   +P   + + V  ACS+  + 
Sbjct: 152 FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMP 211

Query: 201 D---RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
           +    G++  A   ++  +   I   N +V + G+ G L  ++ L+ + + R D   W  
Sbjct: 212 EGLLMGKQVHAYGLRKGELNSFI--INTLVAMYGKMGKLASSKVLLGSFEGR-DLVTWNT 268

Query: 258 LLGA-CTTFRNAHVAERVAKKIME-LKPD 284
           +L + C   +     E + + ++E ++PD
Sbjct: 269 VLSSLCQNEQFLEALEYLREMVLEGVEPD 297


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 205/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G ++H +V  LGL  +  VES+L+DMY KCG + ++ ++F+   + + VS + +L G
Sbjct: 176 LREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAG 235

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  E  ++ F +M     EID      VL       +L LG+++H   I+RS   +
Sbjct: 236 FAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSN 295

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + + L+++Y+KCG ++ + ++F +MP  N ++WNSMI+ FA++G G  AL+++ +M  
Sbjct: 296 PFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRL 355

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P  V+F+ +L ACSH+GL+++G +   SMT+ +++ P++EHY C+VD+LGRAGLL 
Sbjct: 356 KGVEPTDVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLN 415

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+T IE    + D  +W+ LLGAC    +  + +  A+ ++   P+    Y+LL N+Y 
Sbjct: 416 EAKTFIEGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYS 475

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + GRW +  K    MK   V K  G SWIE  + L+
Sbjct: 476 SKGRWKERAKTIKRMKEMCVAKETGISWIEIENNLH 511



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 139/264 (52%), Gaps = 14/264 (5%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K VH   +  G    + V ++L+  Y KCG      +VFD+ML++N ++ +A++ G  Q+
Sbjct: 79  KMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEMLERNVITWTAIISGLVQS 138

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
             +   +R+F EM     E +  ++   L AC+GL ALR G ++H +  +     D  +E
Sbjct: 139 ELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVE 198

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           SAL+D+Y+KCG +    QIF      + ++   +++GFAQNG  EEA++ F  M E GT+
Sbjct: 199 SALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTE 258

Query: 182 PDH---VSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            D     + +GV  A + +GL   G++ H   + + +   P +   N ++++  + G LE
Sbjct: 259 IDSNMVSAVLGVFGADTSLGL---GQQIHSLVIKRSFGSNPFVG--NGLINMYSKCGDLE 313

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
           ++  +     C +  S W  ++ A
Sbjct: 314 DSTKVFSRMPCMNSVS-WNSMIAA 336



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 100/179 (55%), Gaps = 5/179 (2%)

Query: 30  MYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF----- 84
           MY K G++ ++ ++FD+M  +++VS + ++ G+ + G F+     F++M+ +  +     
Sbjct: 1   MYAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQA 60

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           +   +L AC       + K VHC  +     +++ + +AL+  Y KCG      Q+F +M
Sbjct: 61  TLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEM 120

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
             RN+ITW ++ISG  Q+    ++LR+F +MT G  +P+ ++++  L ACS +  +  G
Sbjct: 121 LERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREG 179


>gi|326506094|dbj|BAJ91286.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 625

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 201/337 (59%), Gaps = 7/337 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +  +VH+ ++  G   ++ + +SL+D+YG+CG +D + ++FD ML+K+ VS +A++ G  
Sbjct: 243 EAMQVHSIILKSGYLKDLFLCNSLLDLYGRCGYIDLAKKLFDAMLEKDVVSWTAVISGLA 302

Query: 64  QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             G       IFR+M +  +    F+FG ++ +CA +  L  G++ H   ++       I
Sbjct: 303 ACGYQADAFDIFRQMLKAAMLPNSFTFGSIVSSCADVNDLGSGRQCHALVVKHGLELVPI 362

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE-- 177
           I S  VD+Y+KC  +D A ++F  MP R++I+WN+MI G AQNG+   +L ++D+MT+  
Sbjct: 363 IASCFVDMYSKCAKMDDAIRMFEIMPQRDIISWNAMICGLAQNGQSARSLELYDEMTQLH 422

Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                P+ V+F+GVLSACSH G + +G  +F  M  ++ I+P  EHY C++DL  RAG L
Sbjct: 423 YESVTPNSVTFVGVLSACSHAGAVQKGCSYFTQMVNDFHIEPISEHYTCLIDLFARAGWL 482

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EAE +I N   +HD+ +  +LL  C  + N  +A+R AK+++   PD   +  LL N+Y
Sbjct: 483 DEAEEIISNVPFKHDAVILGILLNGCRKYGNLDMAKRFAKRLLVNNPDNASAIFLLSNMY 542

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A   W+DA K+R     SG  K+ G SWI+   ++ 
Sbjct: 543 IANEEWSDASKLRDAAISSGTHKVMGNSWIDVGGQVQ 579



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 133/248 (53%), Gaps = 7/248 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   ++VHA+ +  G+  +  V +  + +Y + GL++++ +VFD M  ++ +S + LL  
Sbjct: 140 LGSARQVHARAVKAGVFADACVGTGFIKLYAELGLMEDAGKVFDCMPLRDLMSWNVLLDC 199

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             ++G+  S ++ F  M     + D F+F  VL   A L+A     +VH   ++    KD
Sbjct: 200 GVRSGEAGSCMKEFLSMTGCGVQPDEFTFATVLNGLAELSAGLEAMQVHSIILKSGYLKD 259

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++L+DLY +CG +D A ++F  M  +++++W ++ISG A  G   +A  IF  M +
Sbjct: 260 LFLCNSLLDLYGRCGYIDLAKKLFDAMLEKDVVSWTAVISGLAACGYQADAFDIFRQMLK 319

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLL 236
               P+  +F  ++S+C+ +  +  GR+  A + K    + P I   +C VD+  +   +
Sbjct: 320 AAMLPNSFTFGSIVSSCADVNDLGSGRQCHALVVKHGLELVPIIA--SCFVDMYSKCAKM 377

Query: 237 EEAETLIE 244
           ++A  + E
Sbjct: 378 DDAIRMFE 385



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 21/205 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++ HA V+  GL    ++ S  VDMY KC  +D++ R+F+ M +++ +S +A++ G
Sbjct: 342 LGSGRQCHALVVKHGLELVPIIASCFVDMYSKCAKMDDAIRMFEIMPQRDIISWNAMICG 401

Query: 62  YCQTGDFESVIRIFREMEEI-------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
             Q G     + ++ EM ++       +  +F  VL AC+   A++ G    C Y  +  
Sbjct: 402 LAQNGQSARSLELYDEMTQLHYESVTPNSVTFVGVLSACSHAGAVQKG----CSYFTQM- 456

Query: 115 CKDVIIE------SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEE 167
             D  IE      + L+DL+A+ G +D A +I   +P + + +    +++G  + G  + 
Sbjct: 457 VNDFHIEPISEHYTCLIDLFARAGWLDEAEEIISNVPFKHDAVILGILLNGCRKYGNLDM 516

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLS 192
           A R    +      PD+ S I +LS
Sbjct: 517 AKRFAKRLLV--NNPDNASAIFLLS 539



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 12/120 (10%)

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP R+  +WN+ ISG A+ GR  +ALR F  MT     PD  ++  V   C     +D G
Sbjct: 86  MPERDSWSWNTAISGLARAGRTRDALRRFLQMTHTALVPDAFTYSIVSPCCG----VDLG 141

Query: 204 RKHFASMTKEYRIKPKIEHYNCM----VDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
               A       +K  +    C+    + L    GL+E+A  + +    R D   W VLL
Sbjct: 142 S---ARQVHARAVKAGVFADACVGTGFIKLYAELGLMEDAGKVFDCMPLR-DLMSWNVLL 197


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 130/338 (38%), Positives = 203/338 (60%), Gaps = 8/338 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+E+HA ++  G  G V + ++LVDMY K G V  +  VF++M  KN VS SA++  
Sbjct: 191 LNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIAC 250

Query: 62  YCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRL----GKEVHCQYIRRSGC 115
           Y + G     + +FRE+  E  DL    + + +     A       G+ +H  YI R G 
Sbjct: 251 YAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIH-GYILRKGL 309

Query: 116 KDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             ++ + SALV +YA+CG ++   ++F QM  R++++WNS+IS +  +G G++A+ IF++
Sbjct: 310 DSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEE 369

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           MT  G +P  +SF+ VL ACSH GL+D G+  F SM   + I P +EHY CMVDLLGRA 
Sbjct: 370 MTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRAN 429

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            LEEA  +IEN        +W  LLG+C    N  +AER + ++ +L+P    +YVLL +
Sbjct: 430 RLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLAD 489

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +Y   G W+   +++ L++  G++K+PG+SWIE   K+
Sbjct: 490 IYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKI 527



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 140/272 (51%), Gaps = 16/272 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   + VH  ++  G   +  + + L++MY     +D + +VFDK   +     +AL + 
Sbjct: 86  LLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRA 145

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAG----LAALRLGKEVHCQYIRRS 113
               G  E V+ ++R M  I    D F++  VL+AC      ++ L  G+E+H   +R  
Sbjct: 146 LSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHG 205

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
               V I + LVD+YAK GCV  A  +F QMPV+N+++W++MI+ +A+NG+  EAL +F 
Sbjct: 206 YDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFR 265

Query: 174 DMTEGGTK--PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY--RIKPKIEHYNCMVDL 229
           ++        P+ V+ + VL AC+ +  +++GR     + ++    I P I   + +V +
Sbjct: 266 ELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVI---SALVTM 322

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
             R G LE  + + +  D R D   W  L+ +
Sbjct: 323 YARCGKLELGQRVFDQMDKR-DVVSWNSLISS 353



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 97/220 (44%), Gaps = 11/220 (5%)

Query: 51  NSVSSSA----LLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVH 106
           N  +S+A    L+Q  C+ G+    + +          ++ +++ +C    +L   + VH
Sbjct: 34  NPTASTADNNKLIQSLCKQGNLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVH 93

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
              +     +D  + + L+++Y+    +D A ++F +   R +  +N++    +  G GE
Sbjct: 94  RHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGE 153

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSAC----SHMGLIDRGRKHFASMTKEYRIKPKIEH 222
           E L ++  M   G   D  ++  VL AC      + L+++GR+  A + + +     +  
Sbjct: 154 EVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILR-HGYDGYVHI 212

Query: 223 YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
              +VD+  + G +  A  +      ++  S W  ++ AC
Sbjct: 213 MTTLVDMYAKFGCVSNASCVFNQMPVKNVVS-WSAMI-AC 250


>gi|357152605|ref|XP_003576175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Brachypodium distachyon]
          Length = 500

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/337 (39%), Positives = 199/337 (59%), Gaps = 13/337 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H   +  G  GNVVV S+L+DMY K GL+D + RVFD+M +K+SV  + ++  Y +
Sbjct: 122 GAVLHGFAVQFGFLGNVVVSSALLDMYAKSGLLDNAARVFDEMPEKDSVVWNCMVTAYAR 181

Query: 65  TGDFESVIRIFREME-EI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC--- 115
            G     + IFR  + E+     DL S   VL AC     L  G+E+H + +R   C   
Sbjct: 182 AGMAAETLEIFRRAQVEVVNMARDLRSVPSVLNACGKEGELMKGREIHGRMVR---CLAF 238

Query: 116 -KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             DV I +AL+D+YAKCG VD +  +F  M  RN+++W+++IS +  +G+G+EALRI+ +
Sbjct: 239 DSDVPIGNALIDMYAKCGHVDASRAVFAGMLERNVVSWSTLISCYGVHGKGKEALRIYKE 298

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M     KP+ ++F+ VLS+CSH GL+  GR  F SM+K + ++P  EHY  MVD+LGRAG
Sbjct: 299 MLSQRVKPNGITFMSVLSSCSHSGLVTDGRMIFESMSKVHGVEPTAEHYASMVDILGRAG 358

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            +EEA  LI        +S W  +L AC T  N  V E  A ++ EL+ D   +YV L  
Sbjct: 359 AIEEAVGLIRKMPMGPCASAWGAVLSACATHNNVDVGEIAAYRLFELEEDNASNYVTLCG 418

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           +Y AVG+ +    +R+ M+  G+ K PG SW++   +
Sbjct: 419 IYDAVGQLDGVAGLRSRMRELGMVKTPGCSWVDVKGR 455



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 129/282 (45%), Gaps = 5/282 (1%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++H + I  G      +E+ LV +Y +C  +  + +VFD M   +  + + LL       
Sbjct: 27  QLHVQAIVRGHLPQATLETDLVLLYCRCAALPCARKVFDAMPSPSMHAYNILLAASPPRA 86

Query: 67  DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVD 126
             E +  +       D ++    LRACA L    LG  +H   ++     +V++ SAL+D
Sbjct: 87  ALELLSGLIAAGFRPDRYAVPAALRACAELQDPLLGAVLHGFAVQFGFLGNVVVSSALLD 146

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF--DDMTEGGTKPDH 184
           +YAK G +D A ++F +MP ++ + WN M++ +A+ G   E L IF    +       D 
Sbjct: 147 MYAKSGLLDNAARVFDEMPEKDSVVWNCMVTAYARAGMAAETLEIFRRAQVEVVNMARDL 206

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
            S   VL+AC   G + +GR+    M +       +   N ++D+  + G ++ +  +  
Sbjct: 207 RSVPSVLNACGKEGELMKGREIHGRMVRCLAFDSDVPIGNALIDMYAKCGHVDASRAVFA 266

Query: 245 NADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
               R+  S W  L+           A R+ K+++   +KP+
Sbjct: 267 GMLERNVVS-WSTLISCYGVHGKGKEALRIYKEMLSQRVKPN 307



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 10/175 (5%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +LR CA   AL  G ++H Q I R       +E+ LV LY +C  +  A ++F  MP  +
Sbjct: 12  LLRRCAAAGALPAGAQLHVQAIVRGHLPQATLETDLVLLYCRCAALPCARKVFDAMPSPS 71

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM--GLIDRGRKH 206
           +  +N +++          AL +   +   G +PD  +    L AC+ +   L+      
Sbjct: 72  MHAYNILLAASPPRA----ALELLSGLIAAGFRPDRYAVPAALRACAELQDPLLGAVLHG 127

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           FA    ++     +   + ++D+  ++GLL+ A  + +      DS +W  ++ A
Sbjct: 128 FAV---QFGFLGNVVVSSALLDMYAKSGLLDNAARVFDEMP-EKDSVVWNCMVTA 178


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 196/332 (59%), Gaps = 4/332 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++VHA  + +G   +  V + L+D Y KC  + +++RVF++    + ++ ++++    Q 
Sbjct: 424 RQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQC 483

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
              E  I++F EM     E D F    +L ACA L+A   GK+VH   I+R    D    
Sbjct: 484 DHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG 543

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALV  YAKCG ++ A   F  +P R +++W++MI G AQ+G G+ AL +F  M + G  
Sbjct: 544 NALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGIN 603

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+H++   VL AC+H GL+D  +++F SM + + I    EHY+CM+DLLGRAG L++A  
Sbjct: 604 PNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAME 663

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L+ +   + ++S+W  LLGA    ++  + +  A+K+  L+P+   ++VLL N Y + G 
Sbjct: 664 LVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGM 723

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           WN+  K+R LMK S +KK P  SWIE   K++
Sbjct: 724 WNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVH 755



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 5/215 (2%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQG 61
           + G +VHA  +  G   +V V ++LV MYG  G +D++ RVF++   ++N+VS + L+  
Sbjct: 117 RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +       I++F EM     +   F F  V+ AC G   +  G++VH   +R    KD
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   +ALVD+Y K G VD A  IF +MP  ++++WN++ISG   NG    A+ +   M  
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            G  P+  +   +L ACS  G  D GR+    M K
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIK 331



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 112/200 (56%), Gaps = 4/200 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G++VHA V+ +G   +V   ++LVDMY K G VD +  +F+KM   + VS +AL+ G
Sbjct: 218 IEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISG 277

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     I +  +M+      ++F+   +L+AC+G  A  LG+++H   I+ +   D
Sbjct: 278 CVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSD 337

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I   LVD+YAK   +D A ++F  M  R+LI  N++ISG +  GR +EAL +F ++ +
Sbjct: 338 DYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRK 397

Query: 178 GGTKPDHVSFIGVLSACSHM 197
            G   +  +   VL + + +
Sbjct: 398 EGLGVNRTTLAAVLKSTASL 417



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 128/260 (49%), Gaps = 6/260 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H  +I      +  +   LVDMY K   +D++ +VFD M  ++ +  +AL+ G   
Sbjct: 322 GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSH 381

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  + +F E+ +    ++  +   VL++ A L A    ++VH   ++     D  +
Sbjct: 382 GGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHV 441

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L+D Y KC C+  A+++F +    ++I   SMI+  +Q   GE A+++F +M   G 
Sbjct: 442 VNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGL 501

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD      +L+AC+ +   ++G++  A + K   +       N +V    + G +E+AE
Sbjct: 502 EPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAKCGSIEDAE 560

Query: 241 TLIENADCRHDSSLWEVLLG 260
               +   R   S W  ++G
Sbjct: 561 LAFSSLPERGVVS-WSAMIG 579



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 125/275 (45%), Gaps = 12/275 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  +HA ++  G   +    + L+  Y KC     + R FD++     VS S+L+  
Sbjct: 20  LLPGAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTA 77

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G   S I+ F  M       + F+  +VL+    +   RLG +VH   +      D
Sbjct: 78  YSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSD 134

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           V + +ALV +Y   G +D A ++F +    RN ++WN ++S + +N +  +A+++F +M 
Sbjct: 135 VFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMV 194

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P    F  V++AC+    I+ GR+  A M         +   N +VD+  + G +
Sbjct: 195 WSGIQPTEFGFSCVVNACTGSRNIEAGRQVHA-MVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
           + A  + E      D   W  L+  C    + H A
Sbjct: 254 DIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRA 287



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +QGK+VHA +I      +    ++LV  Y KCG ++++   F  + ++  VS SA++ G 
Sbjct: 522 EQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGL 581

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G  +  + +F  M +  +     +   VL AC     +   K          G  D 
Sbjct: 582 AQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGI-DR 640

Query: 119 IIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
             E  S ++DL  + G +D A ++   MP + N   W +++
Sbjct: 641 TEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALL 681



 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 6/168 (3%)

Query: 94  AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
           A   AL  G  +H   ++          + L+  Y+KC     A + F ++P    ++W+
Sbjct: 15  AAAQALLPGAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWS 72

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           S+++ ++ NG    A++ F  M   G   +  +   VL       L    + H  +M   
Sbjct: 73  SLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL--GAQVHAMAMATG 130

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +     +   N +V + G  G +++A  +   AD   ++  W  L+ A
Sbjct: 131 F--GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/337 (37%), Positives = 199/337 (59%), Gaps = 8/337 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + QG+ +H  VI  G    +++ +SL+D+Y KCG +D+  +VF  M   + +S + ++  
Sbjct: 438 INQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIAS 497

Query: 62  YCQTGDFESVIRIFREMEEIDLFS-----FGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
                D     ++  EM    L        GI L  C+ LA  R GKE+H  YI +SG +
Sbjct: 498 SVHFDDCTVGFQMINEMRTEGLMPDEATVLGI-LPMCSLLAVRRQGKEIH-GYIFKSGFE 555

Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +V I +AL+++Y+KCG ++   ++F  M  ++++TW ++IS F   G G++AL+ F DM
Sbjct: 556 SNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDM 615

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  PD V+FI  + ACSH G++  G + F  M  +Y ++P++EHY C+VDLL R+GL
Sbjct: 616 ELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGL 675

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L +AE  I +   + D+SLW  LL AC    N ++A+RV+KKI+EL  D    YVL+ N+
Sbjct: 676 LAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNI 735

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           Y  +G+W+    +R  MK  G+KK PG SWIE   ++
Sbjct: 736 YATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRV 772



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 161/313 (51%), Gaps = 21/313 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VH   + +G   ++ + ++L+DMY +   +D +  VF++M  ++SVS ++L+ G
Sbjct: 137 LELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISG 196

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           YC  G +E  + ++ +        D F+   VL AC  L A++ G  VH    +     D
Sbjct: 197 YCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGD 256

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           VII + L+ +Y K   +  A ++F +M V++ +TWN+MI G+AQ GR E ++++F DM +
Sbjct: 257 VIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID 316

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE----HYNCMVDLLGRA 233
           G   PD +S    + AC   G +  G+        +Y I    E      N ++D+  + 
Sbjct: 317 GFV-PDMLSITSTIRACGQSGDLQVGK-----FVHKYLIGSGFECDTVACNILIDMYAKC 370

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTT---FRNAHVAERVAKKIMELKPDCHLSYV 290
           G L  A+ + +   C+ DS  W  L+   T    ++    + ++ K  ME KPD  +++V
Sbjct: 371 GDLLAAQEVFDTTKCK-DSVTWNSLINGYTQSGYYKEGLESFKMMK--MERKPD-SVTFV 426

Query: 291 LLDNVYRAVGRWN 303
           LL +++  +   N
Sbjct: 427 LLLSIFSQLADIN 439



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 158/289 (54%), Gaps = 10/289 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K+G  VH  +  +G+ G+V++ + L+ MY K   + E+ RVF KM  K+SV+ + ++ G
Sbjct: 238 VKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICG 297

Query: 62  YCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-D 117
           Y Q G  E+ +++F +M +    D+ S    +RAC     L++GK VH +Y+  SG + D
Sbjct: 298 YAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVH-KYLIGSGFECD 356

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            +  + L+D+YAKCG +  A ++F     ++ +TWNS+I+G+ Q+G  +E L  F  M +
Sbjct: 357 TVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMK 415

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+F+ +LS  S +  I++GR     + K +  + ++   N ++D+  + G ++
Sbjct: 416 MERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIK-FGFEAELIIGNSLLDVYAKCGEMD 474

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           +   +       HD   W  ++ +   F +  V  ++  ++    L PD
Sbjct: 475 DLLKVFSYMSA-HDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPD 522



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 149/297 (50%), Gaps = 12/297 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK VH  +I  G   + V  + L+DMY KCG +  +  VFD    K+SV+ ++L+ G
Sbjct: 338 LQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLING 397

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y Q+G ++  +  F+ M+   + D  +F ++L   + LA +  G+ +HC  I+     ++
Sbjct: 398 YTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAEL 457

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           II ++L+D+YAKCG +D   ++F  M   ++I+WN++I+            ++ ++M   
Sbjct: 458 IIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTE 517

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  PD  + +G+L  CS + +  +G++    + K    +  +   N ++++  + G LE 
Sbjct: 518 GLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS-GFESNVPIGNALIEMYSKCGSLEN 576

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
              + +      D   W  L+ A   +          KK ++   D  LS VL D+V
Sbjct: 577 CIKVFKYMK-EKDVVTWTALISAFGMYGE-------GKKALKAFQDMELSGVLPDSV 625



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 5/205 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SALLQGY 62
           Q + VH+ +IT GL  +V+    L+  Y +      S  VF  +   N+V   +++++  
Sbjct: 37  QLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRAL 96

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G F   +  + EM E     D F+F  V+ +CA +  L LG  VH   +      D+
Sbjct: 97  THNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDL 156

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            I +AL+D+Y++   +D A  +F +M  R+ ++WNS+ISG+  NG  E+AL ++      
Sbjct: 157 YIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMT 216

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRG 203
           G  PD  +   VL AC  +  +  G
Sbjct: 217 GMVPDCFTMSSVLLACGSLMAVKEG 241


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 196/332 (59%), Gaps = 4/332 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++VHA  + +G   +  V + L+D Y KC  + +++RVF++    + ++ ++++    Q 
Sbjct: 424 RQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQC 483

Query: 66  GDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
              E  I++F EM     E D F    +L ACA L+A   GK+VH   I+R    D    
Sbjct: 484 DHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG 543

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALV  YAKCG ++ A   F  +P R +++W++MI G AQ+G G+ AL +F  M + G  
Sbjct: 544 NALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGIN 603

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+H++   VL AC+H GL+D  +++F SM + + I    EHY+CM+DLLGRAG L++A  
Sbjct: 604 PNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAME 663

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L+ +   + ++S+W  LLGA    ++  + +  A+K+  L+P+   ++VLL N Y + G 
Sbjct: 664 LVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGM 723

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           WN+  K+R LMK S +KK P  SWIE   K++
Sbjct: 724 WNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVH 755



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 5/215 (2%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQG 61
           + G +VHA  +  G   +V V ++LV MYG  G +D++ RVF++   ++N+VS + L+  
Sbjct: 117 RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +       I++F EM     +   F F  V+ AC G   +  G++VH   +R    KD
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V   +ALVD+Y K G VD A  IF +MP  ++++WN++ISG   NG    A+ +   M  
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            G  P+  +   +L ACS  G  D GR+    M K
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIK 331



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 112/200 (56%), Gaps = 4/200 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G++VHA V+ +G   +V   ++LVDMY K G VD +  +F+KM   + VS +AL+ G
Sbjct: 218 IEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISG 277

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     I +  +M+      ++F+   +L+AC+G  A  LG+++H   I+ +   D
Sbjct: 278 CVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSD 337

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             I   LVD+YAK   +D A ++F  M  R+LI  N++ISG +  GR +EAL +F ++ +
Sbjct: 338 DYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRK 397

Query: 178 GGTKPDHVSFIGVLSACSHM 197
            G   +  +   VL + + +
Sbjct: 398 EGLGVNRTTLAAVLKSTASL 417



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 128/260 (49%), Gaps = 6/260 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H  +I      +  +   LVDMY K   +D++ +VFD M  ++ +  +AL+ G   
Sbjct: 322 GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSH 381

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +  + +F E+ +    ++  +   VL++ A L A    ++VH   ++     D  +
Sbjct: 382 GGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHV 441

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L+D Y KC C+  A+++F +    ++I   SMI+  +Q   GE A+++F +M   G 
Sbjct: 442 VNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGL 501

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           +PD      +L+AC+ +   ++G++  A + K   +       N +V    + G +E+AE
Sbjct: 502 EPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAKCGSIEDAE 560

Query: 241 TLIENADCRHDSSLWEVLLG 260
               +   R   S W  ++G
Sbjct: 561 LAFSSLPERGVVS-WSAMIG 579



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 126/275 (45%), Gaps = 12/275 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  +HA ++  G   +    + L+  Y KC     + RVFD++     VS S+L+  
Sbjct: 20  LLPGAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTA 77

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G   S I+ F  M       + F+  +VL+    +   RLG +VH   +      D
Sbjct: 78  YSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSD 134

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           V + +ALV +Y   G +D A ++F +    RN ++WN ++S + +N +  +A+++F +M 
Sbjct: 135 VFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMV 194

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P    F  V++AC+    I+ GR+  A M         +   N +VD+  + G +
Sbjct: 195 WSGIQPTEFGFSCVVNACTGSRNIEAGRQVHA-MVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
           + A  + E      D   W  L+  C    + H A
Sbjct: 254 DIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRA 287



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +QGK+VHA +I      +    ++LV  Y KCG ++++   F  + ++  VS SA++ G 
Sbjct: 522 EQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGL 581

Query: 63  CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G  +  + +F  M +  +     +   VL AC     +   K          G  D 
Sbjct: 582 AQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGI-DR 640

Query: 119 IIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
             E  S ++DL  + G +D A ++   MP + N   W +++
Sbjct: 641 TEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALL 681



 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 6/168 (3%)

Query: 94  AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
           A   AL  G  +H   ++          + L+  Y+KC     A ++F ++P    ++W+
Sbjct: 15  AAAQALLPGAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWS 72

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           S+++ ++ NG    A++ F  M   G   +  +   VL       L    + H  +M   
Sbjct: 73  SLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL--GAQVHAMAMATG 130

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +     +   N +V + G  G +++A  +   AD   ++  W  L+ A
Sbjct: 131 F--GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 200/368 (54%), Gaps = 39/368 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH  V+  G   +  V ++L+DMYGKCG  DE  RVF +    +  S +AL+ G  +
Sbjct: 172 GKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSR 231

Query: 65  TGDFESVIRIFRE--------------------------MEEIDLF----SFGI------ 88
                  + +FRE                          +E +DLF    S G+      
Sbjct: 232 NAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVT 291

Query: 89  ---VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              VL A A +AAL  G+  HC  +R+    DV + SALVD+YAKCG    A  IF  MP
Sbjct: 292 IPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMP 351

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN+++WN+MI G+A +G    A+++F  M +   KPD V+F  VL ACS  GL + GR+
Sbjct: 352 SRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRR 411

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
           +F  M + + I P++EHY CMV LLGR+G L+EA  LI       DS +W  LLG+C  +
Sbjct: 412 YFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVY 471

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  +AE  A+K+ +L+P    +YVLL N+Y +   W+   ++R  MK  G+KK  G SW
Sbjct: 472 GNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSW 531

Query: 326 IEANSKLN 333
           IE  +K++
Sbjct: 532 IEIKNKVH 539



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 134/332 (40%), Gaps = 80/332 (24%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            + +HA  +  GL  +  V SSL+  Y + G    +  VFD+M +KN V  SAL+ GY  
Sbjct: 36  ARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSA 95

Query: 65  TGDFESVIRIFREMEEI---------------------------------------DLFS 85
            GD E+   +  +M                                          D   
Sbjct: 96  RGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATG 155

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQ- 143
               L A   +  + +GK+VH  Y+ ++GC+ D  + +AL+D+Y KCG  D   ++F + 
Sbjct: 156 VSCALSAVGDVKEVSVGKQVH-GYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHES 214

Query: 144 --MPVR--------------------------------NLITWNSMISGFAQNGRGEEAL 169
             M V                                 N+++W S+++   QNGR  EA+
Sbjct: 215 SHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAV 274

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVD 228
            +F  M   G +P+ V+   VL A +++  +  GR  H  S+ K +     +   + +VD
Sbjct: 275 DLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVG--SALVD 332

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +  + G    A T+ +    R+  S W  ++G
Sbjct: 333 MYAKCGKARHARTIFDAMPSRNVVS-WNAMIG 363



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+  H   +  G   +V V S+LVDMY KCG    +  +FD M  +N VS +A++ G
Sbjct: 305 LMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGG 364

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   GD  + +++F  M++     DL +F  VL AC+       G+    +  +  G   
Sbjct: 365 YAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISP 424

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            +   A +V L  + G +D A+ +  +MP   +   W S++
Sbjct: 425 RMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLL 465



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 83/178 (46%), Gaps = 17/178 (9%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L++C    A  L + +H   +     +D  + S+L+  Y + G    A  +F +MP +N+
Sbjct: 27  LKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNV 83

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           + W+++I+G++  G  E A  + + M   G +P+ +++ G++S       ++R  +   +
Sbjct: 84  VGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSG------LNRSGRALDA 137

Query: 210 MTKEYRIK-----PKIEHYNCMVDLLG---RAGLLEEAETLIENADCRHDSSLWEVLL 259
           +T   R+      P     +C +  +G      + ++    +  A CR D+ +   L+
Sbjct: 138 VTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALI 195



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 26/170 (15%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPV----RNLITWNSMISGFAQNGRGEEALRI 171
           K+V+  SAL+  Y+  G  + A  +  QM       N+ITWN ++SG  ++GR  +A+  
Sbjct: 81  KNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTA 140

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC----MV 227
              M   G  PD       LSA   +  +  G++        Y +K       C    ++
Sbjct: 141 LVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQ-----VHGYVVKAGCRLDACVVTALI 195

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF-----RNAHVAE 272
           D+ G+ G  +E   +       H+SS  +V   +C        RNA V+E
Sbjct: 196 DMYGKCGRADEIVRVF------HESSHMDV--ASCNALVAGLSRNAQVSE 237


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 201/344 (58%), Gaps = 16/344 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK  H  VI + L  +V + +SL+  Y KCG +   +RVF    +++ VS ++++  
Sbjct: 152 LFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITA 211

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  E  + +F+EME  ++   GI    VL ACA  +    G+ VH    R    + 
Sbjct: 212 FVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXES 271

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ------------NGRG 165
           + + +A++D+Y KCG V+ A ++F +MP +++++W +M+ G+A+            +G G
Sbjct: 272 LTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHG 331

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225
           ++A+ +F  M E   KP+ V+F  +L ACSH+GL++ GR  F  M   Y + P ++HY C
Sbjct: 332 KDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYAC 391

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285
           MVD+LGRAGLLEEA  LIE       +S+W  LLGACT   N  +AE+   +++EL+P  
Sbjct: 392 MVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGN 451

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           H +YVLL N+Y   G+W+    +R LM+  G+KK PG S IE +
Sbjct: 452 HGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVD 495



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 8/265 (3%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL--VDESHRVFDKMLKKNSVSSSALLQ 60
           KQ K++HA+++  GL  +    S L+          +D + +VFD++   N  + + L++
Sbjct: 49  KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIR 108

Query: 61  GYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            Y  + +    + IF  M     +  D F+F  +++A + L  L  GK  H   I+    
Sbjct: 109 AYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLG 168

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            DV I ++L+  YAKCG +   +++F+  P R++++WNSMI+ F Q G  EEAL +F +M
Sbjct: 169 SDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEM 228

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                KP+ ++ +GVLSAC+     + GR    S  +  RI   +   N M+D+  + G 
Sbjct: 229 ETQNVKPNGITMVGVLSACAKKSDFEFGR-WVHSYIERNRIXESLTLSNAMLDMYTKCGS 287

Query: 236 LEEAETLIENADCRHDSSLWEVLLG 260
           +E+A+ L +    +   S   +L+G
Sbjct: 288 VEDAKRLFDKMPEKDIVSWTTMLVG 312


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/295 (39%), Positives = 183/295 (62%), Gaps = 4/295 (1%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAA 98
           +F K+  K+ VS + ++  Y         + IF +ME+     D  S   VL AC  L+A
Sbjct: 262 MFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSA 321

Query: 99  LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
           L LG+ +H   +R+    ++++E+AL+D+YAKCGC+++A ++F QM  R++++W SMIS 
Sbjct: 322 LLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISA 381

Query: 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP 218
           +  NG+G +A+ +F  M + G  PD ++F+ VLSACSH GL+D GR +F  MT+E +I P
Sbjct: 382 YGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVP 441

Query: 219 KIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           +IEH+ CMVDLLGRAG ++EA   I+      +  +W  LL AC  + N  +    A ++
Sbjct: 442 RIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQL 501

Query: 279 MELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            +L P+    YVLL N+Y   GRW D   +R++MK  G+KKMPG S  E +++++
Sbjct: 502 FQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVH 556



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 161/329 (48%), Gaps = 20/329 (6%)

Query: 2   LKQGKEVHAKV-ITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +K  K++H+K+ I   L  N  +   L+  Y  CG    +  +FD++ KKN V  + +++
Sbjct: 51  IKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIR 110

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y     +   + +F+ M     + D +++  VL+A +G   L +G ++H   +R     
Sbjct: 111 SYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDL 170

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V + + L+ +Y KCGC+  A ++  QMP R++++WNS+++G A+NG+ ++AL +  +M 
Sbjct: 171 NVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEME 230

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK---PKIEHYNCMVDLLGRA 233
             G KPD  +   +L A ++  L +       S  KE  +K     +  +N M+ +    
Sbjct: 231 LLGLKPDAGTMASLLPAVTNTCLDN------VSFVKEMFMKLANKSLVSWNVMIAVYMNN 284

Query: 234 GLLEEAETL---IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCHLS 288
            +  EA  +   +E+     D+     +L AC       +  R+ + ++   L+P+  L 
Sbjct: 285 SMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLE 344

Query: 289 YVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
             L+D +Y   G    A ++   MK+  V
Sbjct: 345 NALID-MYAKCGCLEYAREVFDQMKFRDV 372



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 20/189 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H  V+   L  N+++E++L+DMY KCG ++ +  VFD+M  ++ VS ++++  Y  
Sbjct: 325 GRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGM 384

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI- 119
            G     + +F  M+++    D  +F  VL AC+    L  G+  +   +    CK V  
Sbjct: 385 NGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGR--YYFKLMTEECKIVPR 442

Query: 120 IES--ALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDMT 176
           IE    +VDL  + G VD A+    QMP+  N   W +++S          A R++ +M 
Sbjct: 443 IEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLS----------ACRVYSNMI 492

Query: 177 EGGTKPDHV 185
            G    D +
Sbjct: 493 IGLLAADQL 501


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/317 (40%), Positives = 193/317 (60%), Gaps = 4/317 (1%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80
           VVV + ++  +G  G VD++ RVF  M ++++ + SA+++ Y + G     + +FR M+ 
Sbjct: 272 VVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQR 331

Query: 81  ----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF 136
               ++  S   VL  C  LA+L  GK+VH Q +R    +D+ + S L+ +Y KCG +  
Sbjct: 332 EGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVR 391

Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
           A Q+F + P+++++ WNSMI+G++Q+G GEEAL +F DM   G  PD V+FIGVLSACS+
Sbjct: 392 AKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSY 451

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            G +  G + F +M  +Y+++P IEHY C+VDLLGRA  + EA  L+E      D+ +W 
Sbjct: 452 SGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWG 511

Query: 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
            LLGAC T     +AE   +K+ +L+P     YVLL N+Y   GRW D   +R  +K   
Sbjct: 512 ALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARS 571

Query: 317 VKKMPGKSWIEANSKLN 333
           V K+PG SWIE   K++
Sbjct: 572 VTKLPGCSWIEVEKKVH 588



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 127/241 (52%), Gaps = 16/241 (6%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  + L+  + K G++ E+ RVFD M  +N VS +++++GY + GD     R+F  M 
Sbjct: 85  NTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMP 144

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYI-RRSGCKDVIIESALVDLYAKCGCVDFAH 138
             ++ S+ ++L    GL  L+ G+    + +      KDV+  + ++  Y + G +D A 
Sbjct: 145 HKNVVSWTVML---GGL--LQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEAR 199

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +F +MP RN++TW +M+SG+A+NG+ + A ++F+ M E     + VS+  +L   +H G
Sbjct: 200 ALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLGYTHSG 255

Query: 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
            +      F +M     +KP +   N M+   G  G +++A  + +    R D+  W  +
Sbjct: 256 RMREASSLFDAMP----VKPVVV-CNEMIMGFGLNGEVDKARRVFKGMKER-DNGTWSAM 309

Query: 259 L 259
           +
Sbjct: 310 I 310



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 4/193 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  Y + G +DE+  +FD+M K+N V+ +A++ GY + G  +   ++F  M 
Sbjct: 178 DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMP 237

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E +  S+  +L        +R    +          K V++ + ++  +   G VD A +
Sbjct: 238 ERNEVSWTAMLLGYTHSGRMREASSL----FDAMPVKPVVVCNEMIMGFGLNGEVDKARR 293

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F  M  R+  TW++MI  + + G   EAL +F  M   G   +  S I VLS C  +  
Sbjct: 294 VFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLAS 353

Query: 200 IDRGRKHFASMTK 212
           +D G++  A + +
Sbjct: 354 LDHGKQVHAQLVR 366



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+VHA+++      ++ V S L+ MY KCG +  + +VF++   K+ V  ++++ G
Sbjct: 354 LDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITG 413

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEV----HCQYIRRS 113
           Y Q G  E  + +F +M       D  +F  VL AC+    ++ G E+     C+Y    
Sbjct: 414 YSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEP 473

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           G +     + LVDL  +   V+ A ++  +MP+  + I W +++
Sbjct: 474 GIEHY---ACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALL 514



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 118/290 (40%), Gaps = 52/290 (17%)

Query: 31  YGKCGLVDESHRVFDKM-LKKNSVSS-SALLQGYCQTGDFESVIRIFREMEEIDLFSFGI 88
           Y + G +D + +VFD+  L   +VSS +A++  Y +       + +F +M + +  S+  
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSW-- 89

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
                                            + L+  + K G +  A ++F  MP RN
Sbjct: 90  ---------------------------------NGLISGHIKNGMLSEARRVFDTMPDRN 116

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +++W SM+ G+ +NG   EA R+F  M         VS+  +L      G +D  RK F 
Sbjct: 117 VVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV----VSWTVMLGGLLQEGRVDDARKLFD 172

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            M ++      +     M+      G L+EA  L +    R+  + W  ++      RN 
Sbjct: 173 MMPEK-----DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVT-WTAMVSGYA--RNG 224

Query: 269 HVAERVAKKIMELKPD-CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
            V   VA+K+ E+ P+   +S+  +   Y   GR  +A  +   M    V
Sbjct: 225 KVD--VARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPV 272


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 123/331 (37%), Positives = 195/331 (58%), Gaps = 17/331 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           + V  ++++D Y K G V+ +  +F +M ++N VS S ++ GYC+ GD E    IF +M 
Sbjct: 543 DTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMP 602

Query: 80  ----------------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
                           E+D+ +   +L ACA   +L LGK +H    +R+  +   + +A
Sbjct: 603 GKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNA 662

Query: 124 LVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           L+D++ KCGCV+ A  +F    V ++ ++WNS+I GFA +G G++AL +F  M + G  P
Sbjct: 663 LIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNP 722

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           D V+ I VLSAC+HMG +D GR++F++M ++Y I P+IEHY CM+DLLGR GL++EA  L
Sbjct: 723 DAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDL 782

Query: 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302
           I++     +  +W  LL AC   +N   AE    ++ +L+P    +Y +L N+Y   G+W
Sbjct: 783 IKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQW 842

Query: 303 NDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +D  K R  MK +G +K  G SW+E N   +
Sbjct: 843 SDMAKARMQMKGTGSQKTAGSSWVELNETFH 873



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 119/243 (48%), Gaps = 16/243 (6%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVS--SSALLQGYC 63
           +E+HA+V+  GL  N    + LV  Y    L+  S RVFD +   ++ +  ++ +L+ Y 
Sbjct: 369 RELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYA 428

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRA--CAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
             G     +  F  M   D F++  +++A   AG+A +R    VH   ++    +D  + 
Sbjct: 429 LGGAPRDALAAFSAMPRRDSFTYSFLIKALSAAGVAPVR---AVHSHVVKLGSVEDTFVG 485

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +AL+D Y+K G    A ++F +MP R++++WN+ ++   + G    A ++FD+M E    
Sbjct: 486 NALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMPE---- 541

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
            D VS+  +L   +  G ++   + F  M +       +  ++ MV    + G LE A  
Sbjct: 542 KDTVSWNTILDGYTKAGEVEAAFELFQRMPER-----NVVSWSTMVSGYCKKGDLEMARV 596

Query: 242 LIE 244
           + +
Sbjct: 597 IFD 599



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 7/163 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD-KMLKKNSVSSSALLQ 60
           L  GK +H  V    L  +  V ++L+DM+ KCG V+ +  VFD + ++K+SVS ++++ 
Sbjct: 638 LSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIG 697

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+   G  +  + +F +M++     D  +   VL AC  +  +  G+       R  G  
Sbjct: 698 GFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIM 757

Query: 117 DVIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMIS 157
             I     ++DL  + G +  A  +   MP   N + W S++S
Sbjct: 758 PQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLS 800


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 194/349 (55%), Gaps = 36/349 (10%)

Query: 10  AKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF 68
           A++I  GL   + V  ++++  Y  CG++DE+  +F +M  K+ VS + ++ GY   G  
Sbjct: 341 ARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQM 400

Query: 69  ESVIRIFREMEEIDLFSFGIV-----------------------------------LRAC 93
              + IFR+M + +  S+  V                                   L AC
Sbjct: 401 RKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSAC 460

Query: 94  AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
           A LAAL +G++ H    R     D    +AL+  YAKCG +  A Q+F +MP  ++++WN
Sbjct: 461 ADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWN 520

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           ++I G+A NG G EA+ +F +M +   +PD V+F+GVLSACSH GLID G   F SMTK+
Sbjct: 521 ALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSMTKD 580

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAER 273
           Y ++P  EHY CMVDLLGR+G L EA  +I+    + ++ +W  +LGAC   +N  +A+ 
Sbjct: 581 YALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAMLGACRVHKNHELAQL 640

Query: 274 VAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
            A+K+ EL+P    +YVLL N+    G+W++A  +R  +K  GV K PG
Sbjct: 641 AAEKLYELEPHKTSNYVLLSNITAEAGKWDEAQNMRVFIKERGVHKTPG 689



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 124/265 (46%), Gaps = 17/265 (6%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  ++++    + G + ++ R+FD++ ++N+VS +A++      G       +F  M 
Sbjct: 41  NTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMP 100

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
             D FS+ +++   A    L L ++      R  G K     +A++  YAK G  D A  
Sbjct: 101 ARDGFSWTLMVSCYARAGELGLARDA---LDRMPGDKCTACYNAMISGYAKHGRFDDAVA 157

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +  +MP  ++I+WNS++ G  +NG    A++ FD+M       D VS+  +L      G 
Sbjct: 158 LLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEM----PARDMVSWNLMLEGYVRAGD 213

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +D     FA +       P +  +  +++   RAG + EA  L +    R+ ++ W V+L
Sbjct: 214 VDSAAGLFAGVP-----SPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAA-WNVML 267

Query: 260 GACTTFRNAHVAERVAKKIMELKPD 284
                 R +H+ E  A K+    PD
Sbjct: 268 SG--YLRLSHMEE--AYKLFTEMPD 288



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 109/233 (46%), Gaps = 32/233 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NVV   +L++ Y + G + E+  +FD++  +N  + + +L GY +    E   ++F EM 
Sbjct: 228 NVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMP 287

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQ---------------YIRRS----------- 113
           + +  S+  ++ A      L+  K++  +               Y++             
Sbjct: 288 DKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDG 347

Query: 114 -GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
              +D +  + ++  Y  CG +D A  +F QMP +++++WN+MI+G+A +G+  +A+ IF
Sbjct: 348 LEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIF 407

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225
             M +  T    VS+  V+S     GL     +HF  M ++ + +     Y C
Sbjct: 408 RKMNQRNT----VSWNSVISGFVQNGLCVEALQHFVLMRRDAK-RADWSTYAC 455



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++ H+ +   G  G+    ++L+  Y KCG + E+ +VFD+M   + VS +AL+ G
Sbjct: 466 LHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDG 525

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     I +FREME+ D+     +F  VL AC+    +  G +      +    + 
Sbjct: 526 YASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSMTKDYALRP 585

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           V    A +VDL  + G +  A +I   M V+ N   W +M+
Sbjct: 586 VAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAML 626



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 129 AKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI 188
           A+ G +  A ++F  MP RN +++N+M+S  A++GR  +A R+FD++    T    VS+ 
Sbjct: 22  ARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNT----VSWN 77

Query: 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            +++ACS  G +   R  F +M            +  MV    RAG L
Sbjct: 78  AMIAACSDHGRVADARDLFDAMPARDGFS-----WTLMVSCYARAGEL 120



 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 17/211 (8%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           ++ +  +A++   A+ G +  A ++F ++P RN ++WN+MI+  + +GR  +A  +FD M
Sbjct: 40  RNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAM 99

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                  D  S+  ++S  +  G +   R     M  +         YN M+    + G 
Sbjct: 100 ----PARDGFSWTLMVSCYARAGELGLARDALDRMPGD----KCTACYNAMISGYAKHGR 151

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            ++A  L+         S   VL+G     RN  +  R  K   E+     +S+ L+   
Sbjct: 152 FDDAVALLREMPAPDIISWNSVLVGLT---RNGEMV-RAVKFFDEMPARDMVSWNLMLEG 207

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           Y   G  + A  +     ++GV      SW+
Sbjct: 208 YVRAGDVDSAAGL-----FAGVPSPNVVSWV 233


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 122/335 (36%), Positives = 200/335 (59%), Gaps = 4/335 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G+++H   + LGL   + V +S++ +Y KCGL+ E+  VFD M +K+ +S S ++  Y
Sbjct: 370 KWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVY 429

Query: 63  CQTGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           CQ       F  +  + RE  + + F+   VL  C  +A L  GK+VH   +      + 
Sbjct: 430 CQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHET 489

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ SAL+ +Y++ G +  A +IF  +   ++++W +MI+G+A++G  +EA+ +F++++  
Sbjct: 490 MVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSV 549

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  PD+V+FIG+L+AC+H GL+D G  ++  MT EY+I P  EHY C++DLL RAG L E
Sbjct: 550 GLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSE 609

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE ++ N     D  +W  LL AC    +   A   A++++ L P+   +++ L N+Y A
Sbjct: 610 AEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSA 669

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            GR  +A  +R LMK  GV K PG SWI +N +LN
Sbjct: 670 SGRREEAAHVRKLMKSKGVIKEPGWSWINSNDQLN 704



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 131/252 (51%), Gaps = 13/252 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +HA+ I  G      V ++L  MY KC   D   R+F KM   + VS + L+  
Sbjct: 268 LHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMT 327

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q GD E  +  F+ M + D+    ++F  V+ ACA LA  + G+++H   +R      
Sbjct: 328 YVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDA 387

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + ++++ LY+KCG +  A  +F  M  +++I+W+++IS + Q    +EA      M+ 
Sbjct: 388 LSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSR 447

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRA 233
            G KP+  +   VLS C  M L++ G++  A     Y +   ++H    ++ ++ +  R+
Sbjct: 448 EGPKPNEFALASVLSVCGSMALLEPGKQVHA-----YALCIGLDHETMVHSALISMYSRS 502

Query: 234 GLLEEAETLIEN 245
           G L+EA  + ++
Sbjct: 503 GNLQEASKIFDS 514



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 6/259 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H   +  GL  +V V S+LVDMY K G  ++   VF+ M  +N VS +A++ G   
Sbjct: 170 GELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVH 229

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     +  F EM       D  +F + L+A A    L  GK +H Q I++   +   +
Sbjct: 230 AGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYV 289

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L  +Y+KC   D+  ++F +M   ++++W ++I  + Q G  E AL  F  M +   
Sbjct: 290 VNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDV 349

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+  +F  V+SAC+++ +   G +      +   +   +   N ++ L  + GLL+EA 
Sbjct: 350 SPNEYTFASVISACANLAITKWGEQIHGHALR-LGLVDALSVSNSIITLYSKCGLLQEA- 407

Query: 241 TLIENADCRHDSSLWEVLL 259
           +L+ +   R D   W  ++
Sbjct: 408 SLVFDGMTRKDIISWSTII 426



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 5/186 (2%)

Query: 33  KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFG 87
           K G + E+  +F+KM  ++ +S + L+ GY    +    + +F  M      + D F   
Sbjct: 96  KLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVS 155

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           + L+ACA    +  G+ +H   ++      V + SALVD+Y K G  +    +F  M  R
Sbjct: 156 VALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTR 215

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           N+++W ++I G    G   + L  F +M       D  +F   L A +  GL+  G+   
Sbjct: 216 NVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIH 275

Query: 208 ASMTKE 213
           A   K+
Sbjct: 276 AQTIKQ 281



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 16/204 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK+VHA  + +GL    +V S+L+ MY + G + E+ ++FD +   + VS +A++ G
Sbjct: 470 LEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMING 529

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  +  I +F  +  +    D  +F  +L AC     + LG      Y +    + 
Sbjct: 530 YAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGLVDLG----FYYYKLMTNEY 585

Query: 118 VIIESA-----LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRI 171
            I  S      ++DL  + G +  A  +   MP   + + W++++     +G  + A+  
Sbjct: 586 QIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWA 645

Query: 172 FDDM--TEGGTKPDHVSFIGVLSA 193
            + M      +   H++   + SA
Sbjct: 646 AEQMLRLHPNSAGAHITLANIYSA 669



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 10/136 (7%)

Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFI 188
           K G +  A  +F +M  R+ I+W ++I+G+       EAL +F +M  + G + D     
Sbjct: 96  KLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVS 155

Query: 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRAGLLEEAETLIE 244
             L AC+ +G+      +F  +   + +K  + +     + +VD+  + G  E+  ++ E
Sbjct: 156 VALKACA-LGM----NVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFE 210

Query: 245 NADCRHDSSLWEVLLG 260
           N   R+  S   V++G
Sbjct: 211 NMTTRNVVSWTAVIVG 226


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 208/370 (56%), Gaps = 39/370 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCG-------------------------- 35
           L  G+ +H  VI  GL  +  V S+++DMYGK G                          
Sbjct: 268 LNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITG 327

Query: 36  -----LVDESHRVFD----KMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EID 82
                LVD++  +F+    + ++ N VS ++++ G  Q G     + +FREM+    + +
Sbjct: 328 LSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPN 387

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
             +   +L AC  +AAL  G+  H   +R     +V + SAL+D+YAKCG ++ +  +F 
Sbjct: 388 HVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFN 447

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            MP +NL+ WNS+++GF+ +G+ +E + IF+ +     KPD +SF  +LSAC  +GL D 
Sbjct: 448 MMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDE 507

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           G K+F  M++EY IKP++EHY+CMV+LLGRAG L+EA  LI+      DS +W  LL +C
Sbjct: 508 GWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSC 567

Query: 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
               N  +AE  A+K+  L+P+   +YVLL N+Y A G W +   IR  M+  G+KK PG
Sbjct: 568 RLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPG 627

Query: 323 KSWIEANSKL 332
            SWI+  +++
Sbjct: 628 CSWIQVKNRV 637



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 166/387 (42%), Gaps = 79/387 (20%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            K GK++H      GL  +  V+ S+  MY +CG + ++ +VFD+M  K+ V+ SALL  
Sbjct: 132 FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCA 191

Query: 62  YCQTGDFESVIRIFREME----EIDLFSF-GI---------------------------- 88
           Y + G  E V+RI  EME    E ++ S+ GI                            
Sbjct: 192 YARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPD 251

Query: 89  ------VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC----------- 131
                 VL +      L +G+ +H   I++   KD  + SA++D+Y K            
Sbjct: 252 QVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFN 311

Query: 132 --------------------GCVDFAHQIF----LQMPVRNLITWNSMISGFAQNGRGEE 167
                               G VD A ++F     Q    N+++W S+I+G AQNG+  E
Sbjct: 312 QFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE 371

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
           AL +F +M   G KP+HV+   +L AC ++  +  GR       + + +   +   + ++
Sbjct: 372 ALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALI 430

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDC 285
           D+  + G +  ++ ++ N     +   W  L+   +    A     + + +M   LKPD 
Sbjct: 431 DMYAKCGRINLSQ-IVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD- 488

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLM 312
            +S+  L +    VG  ++ +K   +M
Sbjct: 489 FISFTSLLSACGQVGLTDEGWKYFKMM 515



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 120/272 (44%), Gaps = 50/272 (18%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           + HA+++  G   +  + + L+  Y      +++  V   +      S S+L+    +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 67  DFESVIRIFREMEEIDLFSFGIV---------LRACAGLAALRLGKEVHC---------- 107
            F   I +F  M     FS G++          + CA L+A ++GK++HC          
Sbjct: 96  LFTQSIGVFSRM-----FSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD 150

Query: 108 ---------QYIR------------RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
                     Y+R            R   KDV+  SAL+  YA+ GC++   +I  +M  
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES 210

Query: 147 R----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
                N+++WN ++SGF ++G  +EA+ +F  +   G  PD V+   VL +     +++ 
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNM 270

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           GR     + K+  +K K    + M+D+ G++G
Sbjct: 271 GRLIHGYVIKQGLLKDKCV-ISAMIDMYGKSG 301


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 132/340 (38%), Positives = 199/340 (58%), Gaps = 6/340 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H      G   +V V SSL+DMY KCG ++++ +VFD++  +N+V  ++++ G
Sbjct: 247 LDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAG 306

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q+  F+  I +FREM+      D  +   VL AC    AL  G+ +H    R S   D
Sbjct: 307 YAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMD 366

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +   +AL+ +Y+KCG +  A +IF  +   ++ +W+++ISG A NG  ++AL +F  M  
Sbjct: 367 LNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEM 426

Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               +P+ ++F+GVL AC+H G +D+G  +F +MT+ Y + P IEHY CMVDLLGRA LL
Sbjct: 427 ISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLL 486

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EAE  I     + D  +W  LL AC    N  +AE  AK+I EL+P    + VLL NVY
Sbjct: 487 VEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVY 546

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            +  RW D  ++R  M    +KK PG S++E +  L H+L
Sbjct: 547 ASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDG-LVHEL 585



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 126/213 (59%), Gaps = 13/213 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALL 59
           L +G+E+H+  + LG+  +V V+++L+  +  CG V+ +  VFD +  L ++ VS ++++
Sbjct: 143 LHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMI 202

Query: 60  QGYCQTGDFESVIRIFREM--------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
            GY Q+  +E  +++F E+        +E+ L S    L  C  L  L LGK++H  +  
Sbjct: 203 SGYLQSHRYELALKVFWELLGDGSLSPDEVTLVS---ALSVCGRLGLLDLGKKIHGLFTG 259

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                DV + S+L+D+Y+KCG ++ A ++F ++P RN + W SMI+G+AQ+   +EA+ +
Sbjct: 260 SGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIEL 319

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           F +M  GG   D  +   VLSAC H G + +GR
Sbjct: 320 FREMQIGGFAADAATIACVLSACGHWGALAQGR 352



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 118/218 (54%), Gaps = 8/218 (3%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAG 95
           S  +F ++ K N  S + + + Y ++      I ++  M       D +SF  VL+ACA 
Sbjct: 80  SRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACAR 139

Query: 96  LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITWN 153
           L+ L  G+E+H   ++     DV +++AL+  ++ CG V+ A  +F  +P  VR++++WN
Sbjct: 140 LSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWN 199

Query: 154 SMISGFAQNGRGEEALRIFDDMT-EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
           SMISG+ Q+ R E AL++F ++  +G   PD V+ +  LS C  +GL+D G+K     T 
Sbjct: 200 SMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTG 259

Query: 213 EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
              +   +   + ++D+  + G +E+A  + +    R+
Sbjct: 260 SGFVL-DVFVGSSLIDMYSKCGQIEDARKVFDRIPHRN 296



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 5/154 (3%)

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           F+  +F Q+   N+ +WN M   ++++    E + +++ M   GT PD+ SF  VL AC+
Sbjct: 79  FSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACA 138

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR-HDSSL 254
            + L+ +GR+   S T +  +   +   N ++      G +E A  + +       D   
Sbjct: 139 RLSLLHKGRE-IHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVS 197

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288
           W  ++   + +  +H  E   K   EL  D  LS
Sbjct: 198 WNSMI---SGYLQSHRYELALKVFWELLGDGSLS 228


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 199/335 (59%), Gaps = 4/335 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           ++GK++HA +       NV V S+LVDMY KC  +  +  VF +M  +N +S +A++ GY
Sbjct: 295 EEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q    E  +R F EM+    + D F+ G V+ +CA LA+L  G + HC  +     + +
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYI 414

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +ALV LY KCG ++ AH++F +M   + ++W ++++G+AQ G+ +E + +F+ M   
Sbjct: 415 TVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVN 474

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KPD V+FIGVLSACS  GL+++G  +F SM K++ I P  +HY CM+DL  R+G  +E
Sbjct: 475 GLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKE 534

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           AE  I+      D+  W  LL +C    N  + +  A+ ++E  P    SYVLL +++ A
Sbjct: 535 AEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAA 594

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            G+W +   +R  M+   VKK PG SWI+  +K++
Sbjct: 595 KGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVH 629



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 156/318 (49%), Gaps = 41/318 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM----------------- 47
           G  VH +V+ LG      V S LVDMY K GL+ ++ RVF +M                 
Sbjct: 165 GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLR 224

Query: 48  --------------LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIV 89
                         + ++S++ + ++ G  Q G     + +FR M      ID ++FG +
Sbjct: 225 CKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSI 284

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           L AC  LAA   GK++H  YI R+  +D V + SALVD+Y+KC  +  A  +F +M  RN
Sbjct: 285 LTACGALAASEEGKQIHA-YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +I+W +MI G+ QN   EEA+R F +M   G KPD  +   V+S+C+++  ++ G + F 
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FH 402

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            +     +   I   N +V L G+ G +E+A  L +     HD   W  L+     F  A
Sbjct: 403 CLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVTGYAQFGKA 461

Query: 269 HVAERVAKKIM--ELKPD 284
                + +K++   LKPD
Sbjct: 462 KETIDLFEKMLVNGLKPD 479



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 124/277 (44%), Gaps = 37/277 (13%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           N+   ++L+       LV +  R+F  M ++++VS +AL+ G+  TG     ++++R + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 79  EEIDLFSFGIVLRA----CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
            E  +    I L A     + L+   LG  VHCQ +R        + S LVD+YAK G +
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 135 DFAHQIFLQMPV-------------------------------RNLITWNSMISGFAQNG 163
             A ++F +M                                 R+ ITW +M++G  QNG
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
              EAL +F  M   G   D  +F  +L+AC  +   + G++  A +T+ +  +  +   
Sbjct: 258 LQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTW-YEDNVFVG 316

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           + +VD+  +   +  AE +     CR+  S   +++G
Sbjct: 317 SALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVG 353



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 18/177 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G + H   +  GL   + V ++LV +YGKCG ++++HR+FD+M   + VS +AL+ G
Sbjct: 395 LEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTG 454

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRAC--AGLAALRLGKEVHCQYIRRSGC 115
           Y Q G  +  I +F +M     + D  +F  VL AC  AGL       E  C Y      
Sbjct: 455 YAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLV------EKGCDYFDSMQK 508

Query: 116 KDVIIE-----SALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGE 166
              I+      + ++DLY++ G    A +   QMP   +   W +++S     G  E
Sbjct: 509 DHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNME 565



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 5/125 (4%)

Query: 95  GLAALRLGKEVHCQYIRRS-GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
           G   +R+   VHC  ++         + + L+  YAK G +  A ++F +MP  NL T N
Sbjct: 24  GRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRN 83

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           +++S  A +    +  R+F  M E     D VS+  +++  S  G   R  + + ++ +E
Sbjct: 84  ALLSALAHSRLVPDMERLFASMPE----RDAVSYNALITGFSSTGSPARSVQLYRALLRE 139

Query: 214 YRIKP 218
             ++P
Sbjct: 140 ESVRP 144


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/339 (37%), Positives = 206/339 (60%), Gaps = 10/339 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GKEVH  V+  GL  +  +  SL+ +Y  CG    +  +FD M +K+SVS +A++ G
Sbjct: 353 LRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISG 412

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y Q G  E  + +FR++        +I + S   VL AC+  +ALRLGKE HC  ++   
Sbjct: 413 YSQNGLPEDALILFRKLVSDGFQPSDIAVVS---VLGACSQQSALRLGKETHCYALKALL 469

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            +DV +  + +D+YAK GC+  +  +F  +  ++L +WN++I+ +  +G GEE++ +F+ 
Sbjct: 470 MEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFER 529

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M + G  PD  +FIG+L+ CSH GL++ G K+F  M   + I+PK+EHY C++D+LGRAG
Sbjct: 530 MRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAG 589

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L++A  L+     + DS +W  LL  C  F    + + VA+K++EL+P    +YV L N
Sbjct: 590 RLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSN 649

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +Y   GRW+D  ++R ++K  G++K  G SWIE   K++
Sbjct: 650 LYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVH 688



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 115/209 (55%), Gaps = 5/209 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G  +H   + LGL  +V V +SLVDMY KCG + E+  +FDK  +KN+VS + ++ G
Sbjct: 150 VQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGG 209

Query: 62  YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            C  G       +FREM+     E++  +   +L AC  ++ LR  KE+H   IR     
Sbjct: 210 LCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQY 269

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D ++ +  V  YAKCG +  A ++F  M  + + +WN++I G AQNG   +AL ++  MT
Sbjct: 270 DELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMT 329

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             G  PD  +   +L A +H+  +  G++
Sbjct: 330 YSGLVPDWFTIGSLLLASAHLKSLRYGKE 358



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 134/265 (50%), Gaps = 6/265 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           +L+  KE+H   I  G   + +V +  V  Y KCG++  + RVF  M  K   S +AL+ 
Sbjct: 251 QLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIG 310

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G  Q GD    + ++ +M       D F+ G +L A A L +LR GKEVH   +R     
Sbjct: 311 GCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEI 370

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  I  +L+ LY  CG    A  +F  M  ++ ++WN+MISG++QNG  E+AL +F  + 
Sbjct: 371 DSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLV 430

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +P  ++ + VL ACS    +  G++      K   ++      +  +D+  ++G +
Sbjct: 431 SDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACST-IDMYAKSGCI 489

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
           +E+ ++ +    + D + W  ++ A
Sbjct: 490 KESRSVFDGLKNK-DLASWNAIIAA 513



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 134/266 (50%), Gaps = 9/266 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H  VI +GL  +V V ++L+ MYGK G VD + +VF  M  +N VS ++++ G+ +
Sbjct: 50  GEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSE 109

Query: 65  TGDFESVIRIFREM---EE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            G  +    +  EM   EE    D+ +   VL  CA    +++G  +H   ++    +DV
Sbjct: 110 NGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDV 169

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT-E 177
            + ++LVD+Y+KCG +  A  +F +   +N ++WN+MI G    G   EA  +F +M  +
Sbjct: 170 RVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQ 229

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              + + V+ + +L AC  +  + R  K     +  +  +      N  V    + G+L 
Sbjct: 230 EDIEVNEVTVLNILPACLEISQL-RSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLI 288

Query: 238 EAETLIENADCRHDSSLWEVLLGACT 263
            AE +  + + +  +S W  L+G C 
Sbjct: 289 CAERVFYSMETKTVNS-WNALIGGCA 313



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 15/241 (6%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D F+F  V++AC G     LG+ +H   I+     DV + +AL+ +Y K G VD A ++F
Sbjct: 30  DNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVF 89

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG--GTKPDHVSFIGVLSACS---- 195
             MPVRNL++WNS+ISGF++NG  ++   +  +M  G  G  PD  + + VL  C+    
Sbjct: 90  HYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVD 149

Query: 196 -HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
             MG+   G      ++++ R+       N +VD+  + G L EA+ L +  + R ++  
Sbjct: 150 VQMGIRIHGLAVKLGLSEDVRVN------NSLVDMYSKCGYLTEAQMLFDKNN-RKNAVS 202

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  ++G   T      A  + ++ M+++ D  ++ V + N+  A    +    ++ L  Y
Sbjct: 203 WNTMIGGLCTKGYIFEAFNLFRE-MQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGY 261

Query: 315 S 315
           S
Sbjct: 262 S 262


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 123/315 (39%), Positives = 198/315 (62%), Gaps = 4/315 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  ++++  + K G ++ + + F++M  KN V+ +A++ GY +    E+ +++F+ M 
Sbjct: 160 SVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMV 219

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           E     +  S   VL  C+ L+AL+LGK+VH    +     ++   ++L+ +Y KCG ++
Sbjct: 220 ESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLE 279

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A ++FL MP ++++TWN+MISG+AQ+G GE+AL +FD M + G KPD ++F+ VLSAC+
Sbjct: 280 DAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACN 339

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H G +D G ++F SM ++Y ++ K +HY C+VDLLGR G L EA  LI+    +  S+++
Sbjct: 340 HAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIF 399

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LLGAC   +N  +AE  AK ++ L P+    YV L NVY A+ RW+    +R  MK +
Sbjct: 400 GTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDN 459

Query: 316 GVKKMPGKSWIEANS 330
            V K PG SWIE  S
Sbjct: 460 KVIKTPGYSWIEVKS 474



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 89/169 (52%), Gaps = 4/169 (2%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGL 96
           V+ +   FD+M  K++ S + ++ G+ Q G  +    +F  M   +  S+  ++      
Sbjct: 84  VESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVES 143

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
             L L K    Q    +  + V+  +A++  + K G ++ A + F +MP++NL+TWN+MI
Sbjct: 144 GDLDLAK----QLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMI 199

Query: 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           +G+ +N + E  L++F  M E G +P+  S   VL  CS++  +  G++
Sbjct: 200 AGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQ 248



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 155/317 (48%), Gaps = 46/317 (14%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC-QTGDFESVIRIFREM 78
           NV+  + ++  + + G ++ + RVF+ M  K +V+ +++L GY  + G  +   ++F  +
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 79  EEIDLFSFGIVLRAC----AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
            E D+FS+ I+L AC    A + + RL       +  +   KD    + ++  +++ G +
Sbjct: 64  PEPDIFSYNIML-ACYLHNADVESARL-------FFDQMPVKDTASWNTMISGFSQNGMM 115

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           D A ++FL MPVRN ++WN+MISG+ ++G  + A ++F    E       V++  +++  
Sbjct: 116 DQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLF----EVAPVRSVVAWTAMITGF 171

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET---------LIEN 245
              G I+   K+F  M  +  +      +N M+     AG +E  +          ++E+
Sbjct: 172 MKFGKIELAEKYFEEMPMKNLVT-----WNAMI-----AGYIENCQAENGLKLFKRMVES 221

Query: 246 ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVL-----LDNVYRAVG 300
               + SSL  VLLG C+       A ++ K++ +L     +S+ +     L ++Y   G
Sbjct: 222 GFRPNPSSLSSVLLG-CSNLS----ALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCG 276

Query: 301 RWNDAFKIRTLMKYSGV 317
              DA+K+  +M    V
Sbjct: 277 DLEDAWKLFLVMPQKDV 293



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 5/151 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK+VH  +    +  N+   +SL+ MY KCG ++++ ++F  M +K+ V+ +A++ G
Sbjct: 243 LKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISG 302

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + +F +M +     D  +F  VL AC     + LG E     +R  G + 
Sbjct: 303 YAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEA 362

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR 147
                + +VDL  + G +  A  +  +MP +
Sbjct: 363 KPDHYTCVVDLLGRGGKLVEAVDLIKKMPFK 393


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 125/334 (37%), Positives = 201/334 (60%), Gaps = 6/334 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK++H   + LG+  N+ V  +L++MY  C  VD + RVFDK+ +   V+ +A++  
Sbjct: 151 LEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITS 210

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             +       + +FRE++E  L     +  + L +CA L AL LG+ +H +Y++++G   
Sbjct: 211 CARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIH-EYVKKNGFDQ 269

Query: 118 VI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            + + +AL+D+YAKCG +D A  +F  MP R+   W++MI  +A +G G +A+ +  +M 
Sbjct: 270 YVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMK 329

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +   +PD ++F+G+L ACSH GL++ G ++F SMT EY I P I+HY CM+DLLGRAG L
Sbjct: 330 KAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRL 389

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA   I+    +    LW  LL +C++  N  +A+ V ++I EL       YV+L N+ 
Sbjct: 390 EEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLC 449

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
              GRW+D   +R +M   G  K+PG S IE N+
Sbjct: 450 ARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNN 483



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 127/239 (53%), Gaps = 20/239 (8%)

Query: 37  VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI-------DLFSFGIV 89
           +D +HR+FDK+ + + V  + + +GY +   F+  +R      ++       D ++F  +
Sbjct: 85  MDHAHRMFDKIPQPDIVLFNTMARGYAR---FDDPLRAILLCSQVLCSGLLPDDYTFSSL 141

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L+ACA L AL  GK++HC  ++     ++ +   L+++Y  C  VD A ++F ++    +
Sbjct: 142 LKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCV 201

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           + +N++I+  A+N R  EAL +F ++ E G KP  V+ +  LS+C+ +G +D GR     
Sbjct: 202 VAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGR----- 256

Query: 210 MTKEYRIKPKIEHY----NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
              EY  K   + Y      ++D+  + G L++A ++ ++   R D+  W  ++ A  T
Sbjct: 257 WIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMP-RRDTQAWSAMIVAYAT 314


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/315 (39%), Positives = 193/315 (61%), Gaps = 4/315 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +V+  +SL+  Y K G ++ +  +FD M  +  VS + ++ GY + G +   + +FREM+
Sbjct: 176 DVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQ 235

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               E D  S   VL ACA L AL +GK +H    +    +   I +AL+++YAKCGC+D
Sbjct: 236 MVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCID 295

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A  +F Q+  +++I+W++MI G A +G+G EA+++F++M +    P+ ++F+GVL ACS
Sbjct: 296 EAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACS 355

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H GL D G K+F  M+  Y I+P+IEHY C++DLLGR+G L +A   I     + DS +W
Sbjct: 356 HTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIW 415

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LL +C   RN  +A    K++MEL+P+   +YVLL N+Y   G+W D   IR L++  
Sbjct: 416 NSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNK 475

Query: 316 GVKKMPGKSWIEANS 330
            +KK PG S IE N+
Sbjct: 476 RIKKTPGSSSIEVNN 490



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 165/356 (46%), Gaps = 45/356 (12%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++ Q K++HA V+ L L  +  + + ++D     G V  +  +F ++L  N  + +A+++
Sbjct: 22  KITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIR 81

Query: 61  GYCQTGDFESVIRIFREMEE-------IDLFSFGIVLRACAGLAALRLGKEVH------- 106
            Y       S I +F +M          D F+F  V+++C G+   RLG +VH       
Sbjct: 82  TYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFG 141

Query: 107 ------------------------CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
                                   C+       +DVI  ++L+  Y K G ++ A ++F 
Sbjct: 142 ADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFD 201

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            MPVR +++W +MI+G+ + G   +AL +F +M   G +PD +S I VL AC+ +G ++ 
Sbjct: 202 DMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEV 261

Query: 203 GRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           G+  H  +    +  K  I   N ++++  + G ++EA  L +      D   W  ++G 
Sbjct: 262 GKWIHMYADKNGFLRKTGI--CNALIEMYAKCGCIDEAWNLFDQL-VEKDVISWSTMIGG 318

Query: 262 CTTFRNAHVAERVAKKIMELK--PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
                  + A ++ +++ +++  P+  ++++ +       G W++  K   +M  S
Sbjct: 319 LANHGKGYEAIQLFEEMCKVRVAPN-EITFLGVLLACSHTGLWDEGLKYFDVMSAS 373


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 209/362 (57%), Gaps = 37/362 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ +H+ V  LG    V V + LV MY  CGL++ +  VFD+  + +  S + ++ G
Sbjct: 152 LRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGG 211

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV-------------------------------- 89
           Y + G F+S  R+F  M + D+ S+ ++                                
Sbjct: 212 YLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVL 271

Query: 90  ---LRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
              L ACA L A+  G+ +  +Y+ R   +  V + +AL+D+Y+KCG V+ A ++F +M 
Sbjct: 272 VNALSACAHLGAMEQGQWIE-RYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMK 330

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +N++ W++MI+G A NG+G++AL +F  M   G KP+ V+FIG+L+ACSH  L+D G  
Sbjct: 331 EKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCS 390

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F SMT  Y +KP   H+ CMVDL GRAG+L++A+T+I++   + +S++W  LL AC   
Sbjct: 391 FFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIH 450

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            +  + E+V K+++EL P+    YVLL N+Y A GRW+   ++R +M+   V K PG S+
Sbjct: 451 GDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSF 510

Query: 326 IE 327
           I+
Sbjct: 511 ID 512



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 131/276 (47%), Gaps = 39/276 (14%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM--YGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           LK   ++HA+ IT G+  +  V S ++        G +  +  +F ++ K +   ++ L+
Sbjct: 48  LKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLI 107

Query: 60  QGYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           + Y  + +    +  + EM E      D+ +F ++L+AC+ + +LRLG+ +H    +   
Sbjct: 108 RAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGW 167

Query: 115 CKDVIIESALVDLYAKCGCVD-------------------------------FAHQIFLQ 143
             +V + + LV +YA CG ++                                A ++F  
Sbjct: 168 SSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEA 227

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP R++++W+ MI+G+ Q  R +E L +F DM     +P+    +  LSAC+H+G +++G
Sbjct: 228 MPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQG 287

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           +     M ++  ++  +     ++D+  + G +E A
Sbjct: 288 QWIERYMERK-NVRLTVRLGTALIDMYSKCGSVERA 322


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 199/337 (59%), Gaps = 5/337 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L  GK+VHA+ I  GL  N V + +++ + Y KCG +++  +VF++M  ++ +S ++L+ 
Sbjct: 391 LSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVT 450

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
            Y Q  +++  I IF  M       + F+F  VL +CA L  L  G++VH    +     
Sbjct: 451 AYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDM 510

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  IESALVD+YAKCGC+  A ++F ++   + ++W ++I+G AQ+G  ++AL++F  M 
Sbjct: 511 DKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMV 570

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +P+ V+F+ VL ACSH GL++ G ++F  M K Y + P++EHY C+VDLL R G L
Sbjct: 571 QLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHL 630

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            +A   I       +  +W+ LLGAC    N  + E  A+KI+  K +   +YVLL N Y
Sbjct: 631 NDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTY 690

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              G + D   +R +MK  GVKK PG SWI  N  L+
Sbjct: 691 IESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTLH 727



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 149/307 (48%), Gaps = 12/307 (3%)

Query: 2   LKQGKEVHAKVITLGLCG--NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           LKQ K VH  ++        ++V+ + +   Y KC  +D + R+FD+M ++N+ S + L+
Sbjct: 84  LKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLI 143

Query: 60  QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G  + G F      F EM+      D F++  +L+ C GL ++ LG  VH Q + R   
Sbjct: 144 AGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFT 203

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
               + +AL+++YAK   ++ ++++F  M   N+++WN+MI+GF  N    +A  +F  M
Sbjct: 204 SHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRM 263

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  PD  +FIGV  A   +  +++  K  +    E  +         ++D+  + G 
Sbjct: 264 MGEGVTPDAQTFIGVAKAIGMLRDVNKA-KEVSGYALELGVDSNTLVGTALIDMNSKCGS 322

Query: 236 LEEAETLIEN--ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           L+EA ++  +    CR ++    ++ G   +  N    E  AK     + D +L +    
Sbjct: 323 LQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMC---QNDIYLDHYTYC 379

Query: 294 NVYRAVG 300
           +V+ A+ 
Sbjct: 380 SVFNAIA 386


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 201/333 (60%), Gaps = 4/333 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G+E+H  +I   L     V S++++MY KCG +D +H +F ++  K+++  ++++  
Sbjct: 329 IKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITS 388

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q G  E  I +FR+M     + D  +    L ACA + AL  GKE+H   I+ +   D
Sbjct: 389 FSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESD 448

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +   SAL+++YAKCG ++ A  +F  M  +N + WNS+I+ +  +G   ++L +F +M E
Sbjct: 449 LFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLE 508

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +PDH++F+ +LS+C H G ++ G ++F  MT+EY I  ++EHY CM DL GRAG L+
Sbjct: 509 EGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLD 568

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  +I +      +S+W  LLGAC    N  +AE  ++ +++L+P     Y+LL +V  
Sbjct: 569 EAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLA 628

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
             G+W    KI+ LMK  GV+K+PG SWIE N+
Sbjct: 629 DAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNN 661



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 148/264 (56%), Gaps = 6/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LKQ KE+H  ++  G+  +V + S+L+D+Y KC     + ++F+   K + V  +A++ G
Sbjct: 228 LKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISG 287

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  + IFR + +     +  +F  +L ACAGLAA++LG+E+H   I+    + 
Sbjct: 288 YVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEK 347

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + SA++++YAKCG +D AH IF ++ +++ I WNS+I+ F+Q+G+ EEA+ +F  M  
Sbjct: 348 CPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGM 407

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G K D V+    LSAC+++  +  G++    M K    +  +   + ++++  + G L 
Sbjct: 408 EGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKG-AFESDLFDMSALINMYAKCGKLN 466

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A  L+ N     +   W  ++ A
Sbjct: 467 IAR-LVFNLMQEKNEVAWNSIIAA 489



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 112/198 (56%), Gaps = 6/198 (3%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            ++ GK +   ++ +G   ++ V SSL+ +Y   G ++++ R FDKM+ K+ V  + ++ 
Sbjct: 25  NVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMIN 84

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q G+ +S I++F++M     + D  +F  VL      A +  G+++H   + RSG  
Sbjct: 85  GYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLH-GLVVRSGLD 143

Query: 117 DV-IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            V ++ + LV +Y+K   +  A ++F  MP  +L+ WN MI G+ QNG  ++A  +F++M
Sbjct: 144 FVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEM 203

Query: 176 TEGGTKPDHVSFIGVLSA 193
              G KPD ++F   L +
Sbjct: 204 ISAGIKPDSITFTSFLPS 221



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 133/262 (50%), Gaps = 6/262 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+++H  V+  GL    +V ++LV +Y K   + ++ ++FD M + + V  + ++ G
Sbjct: 127 VEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGG 186

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +    +F EM     + D  +F   L + A  ++L+  KE+H   +R     D
Sbjct: 187 YVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILD 246

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+DLY KC     A ++F      +++ + +MISG+  NG  ++AL IF  + +
Sbjct: 247 VYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQ 306

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+ ++F  +L AC+ +  I  GR+    + K   ++ K    + ++++  + G L+
Sbjct: 307 KKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKN-ELEEKCPVGSAIMNMYAKCGRLD 365

Query: 238 EAETLIENADCRHDSSLWEVLL 259
            A  +      + D+  W  ++
Sbjct: 366 LAHLIFGRISIK-DAICWNSII 386



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 71/124 (57%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D ++F  V++ C GL  +RLGK +    +      D+ + S+L+ LYA  GC++ A + F
Sbjct: 9   DKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFF 68

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
            +M  ++ + WN MI+G+ Q G  + A+++F DM     KPD V+F  VLS      +++
Sbjct: 69  DKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVE 128

Query: 202 RGRK 205
            GR+
Sbjct: 129 YGRQ 132


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 204/335 (60%), Gaps = 19/335 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++HA+++ LG   +V + +SLV  Y  C  +D +  VFD+M +++ VS + ++  
Sbjct: 144 LSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDA 203

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           + + G+F++ + +F EM+   E D ++   +  ACAG+ +L LG              DV
Sbjct: 204 FVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGI-----------VNDV 252

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           ++ ++LVD+Y KCG ++ A Q+F +MP R++ +WNSMI GF+ +G    AL  F  M   
Sbjct: 253 LLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRT 312

Query: 179 -GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+ ++F+GVLSAC+H GL+  GR++F  M  EY+IKP++EHY C+VDLL RAGL++
Sbjct: 313 EKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLID 372

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHV--AERVAKKIMELKPD-CHLSYVLLDN 294
           EA  ++ N   R D  +W  LL AC   +NA V  +E +A++++E +   C   YVLL  
Sbjct: 373 EALDVVSNMPMRPDLVIWRSLLDACCK-QNAGVELSEEMARRVLEAEGGVCSGVYVLLSR 431

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           VY +  RWND   +R LM   GV K PG S IE +
Sbjct: 432 VYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEID 466



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 131/277 (47%), Gaps = 35/277 (12%)

Query: 2   LKQGKEVHAKVI---------TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS 52
           + Q K++HA+ I         T  L   ++  SSL D+         + RVF ++   NS
Sbjct: 39  ISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDL-------RYAFRVFHQIENPNS 91

Query: 53  VSSSALLQGYCQTGDF-ESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVH 106
              +AL++   ++ D  +  I ++  M E      D  +F  VL+ACA L AL  G+++H
Sbjct: 92  FMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIH 151

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
            Q ++     DV I ++LV  YA C  +DFA  +F +M  R+L++WN +I  F + G  +
Sbjct: 152 AQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFD 211

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
            AL +F +M +   +PD  +   + +AC+ MG +  G            I   +     +
Sbjct: 212 AALNLFGEM-QKFFEPDGYTIQSIANACAGMGSLSLG------------IVNDVLLNTSL 258

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
           VD+  + G LE A  L      R  +S   ++LG  T
Sbjct: 259 VDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFST 295


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/338 (36%), Positives = 201/338 (59%), Gaps = 10/338 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GKE+H  V+  GL  +  V +SL+  Y  CG    +  +FD+M  KN VS +A++ G
Sbjct: 467 LQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISG 526

Query: 62  YCQTGDFESVIRIFR-------EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y Q G     + +FR       +  EI + S   V  AC+ L+ALRLGKE H   ++   
Sbjct: 527 YSQNGLPYESLALFRKSLSEGIQSHEIAIVS---VFGACSQLSALRLGKEAHGYVLKALQ 583

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            +D  +  +++D+YAK GC+  + ++F  +  +N+ +WN++I     +G G+EA+ +++ 
Sbjct: 584 TEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYER 643

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M + G  PD  ++IG+L AC H GL++ G K+F  M     I+PK+EHY C++D+L RAG
Sbjct: 644 MKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAG 703

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L++A  L+       D+ +W  LL +C TF    + E+VAKK++EL+PD   +YVLL N
Sbjct: 704 RLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSN 763

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +Y  +G+W+   ++R +MK  G++K  G SWIE   ++
Sbjct: 764 LYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRV 801



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 156/303 (51%), Gaps = 11/303 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           + V+ + L+ MY  CG   +S  VFD M  KN +  +AL+ GY + G +  V+++F ++ 
Sbjct: 78  DYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLV 137

Query: 80  -----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
                + D F+F  V++AC G+  +RLG+ +H   I+     DV + +ALV +Y KCG V
Sbjct: 138 SDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAV 197

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT-EGGTKPDHVSFIGVLSA 193
           D A ++F  MP  NL++WNSMI  F++NG   ++  +  +M  E G  PD V+ + +L  
Sbjct: 198 DEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPV 257

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+  G +D G      +  +  +  ++   N MV +  + G L EA+      + ++  S
Sbjct: 258 CAGEGEVDIGMG-IHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVS 316

Query: 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
            W  ++ A +   + + A  + +++     +   + V + NV  A     D  ++R+L +
Sbjct: 317 -WNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC---LDKLQLRSLKE 372

Query: 314 YSG 316
             G
Sbjct: 373 LHG 375



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 137/270 (50%), Gaps = 16/270 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+ +H  VI +GL  +V V ++LV MYGKCG VDE+ +VFD M + N VS ++++  
Sbjct: 162 VRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICA 221

Query: 62  YCQTGDFESVIRIFREM--EE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           + + G       +  EM  EE    D+ +   +L  CAG   + +G  +H   ++    +
Sbjct: 222 FSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSE 281

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V++ +A+V +Y+KCG ++ A   F++   +N+++WN+MIS F+  G   EA  +  +M 
Sbjct: 282 EVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQ 341

Query: 177 EGG--TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY---NCMVDLLG 231
             G   K + V+ + VL AC     +D+ +         Y  +   +H    N  +    
Sbjct: 342 IQGEEMKANEVTILNVLPAC-----LDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYA 396

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           + G L  AE +      +  SS W  L+G 
Sbjct: 397 KCGALNSAEKVFHGIGDKTVSS-WNALIGG 425



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 129/247 (52%), Gaps = 8/247 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           +V + ++ +  Y KCG ++ + +VF  +  K   S +AL+ G+ Q GD    + +  +M 
Sbjct: 384 HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMT 443

Query: 79  ---EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
              ++ D F+   +L ACA L +L+ GKE+H   +R     D  + ++L+  Y  CG   
Sbjct: 444 YSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKAS 503

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A  +F +M  +NL++WN+MISG++QNG   E+L +F      G +   ++ + V  ACS
Sbjct: 504 SARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACS 563

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNC-MVDLLGRAGLLEEAETLIENADCRHDSSL 254
            +  +  G++    + K  + +       C ++D+  ++G ++E+  + +    ++ +S 
Sbjct: 564 QLSALRLGKEAHGYVLKALQTEDAF--VGCSIIDMYAKSGCIKESRKVFDGLKDKNVAS- 620

Query: 255 WEVLLGA 261
           W  ++ A
Sbjct: 621 WNAIIVA 627



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 7/207 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G  +H   + LGL   V+V +++V MY KCG ++E+   F K   KN VS + ++  +  
Sbjct: 267 GMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSL 326

Query: 65  TGDFESVIRIFREM----EEIDLFSFGI--VLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            GD      + +EM    EE+      I  VL AC     LR  KE+H  Y  R   + V
Sbjct: 327 EGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELH-GYSFRHCFQHV 385

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +A +  YAKCG ++ A ++F  +  + + +WN++I G AQNG   +AL +   MT  
Sbjct: 386 ELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYS 445

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRK 205
           G +PD  +   +L AC+H+  +  G++
Sbjct: 446 GQQPDWFTISSLLLACAHLKSLQYGKE 472



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 101/193 (52%), Gaps = 16/193 (8%)

Query: 51  NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYI 110
           N  ++  L+Q + Q   F S+     + +E    + G++L+AC     +  G+ +H +++
Sbjct: 20  NLTTALILIQSHSQNAAFISL-----QAKE----AIGLLLQACGNQKDIETGRRLH-KFV 69

Query: 111 RRSGC--KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
             S     D ++ + L+ +YA CG    +  +F  M  +NLI WN+++SG+ +NG   + 
Sbjct: 70  SDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDV 129

Query: 169 LRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLID-RGRKHFASMTKEYRIKPKIEHYNCM 226
           +++F D+ ++   +PD+ +F  V+ AC   G++D R  +    M  +  +   +   N +
Sbjct: 130 VKVFMDLVSDTDFQPDNFTFPSVIKACG--GILDVRLGEVIHGMVIKMGLVLDVFVGNAL 187

Query: 227 VDLLGRAGLLEEA 239
           V + G+ G ++EA
Sbjct: 188 VGMYGKCGAVDEA 200


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 125/334 (37%), Positives = 200/334 (59%), Gaps = 6/334 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK++H   + LG+  N+ V  +L++MY  CG +D S RVFDK+ +   V+ +A++  
Sbjct: 128 LAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMS 187

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
             +       + +FRE++EI L     +  +VL +CA L +L LG+ +H +Y+++ G  +
Sbjct: 188 LARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMH-EYVKKYGFDR 246

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V + + L+D+YAKCG +D A  +F  MP R+   W+++I  +A +G G +A+ + ++M 
Sbjct: 247 YVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMK 306

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           +   +PD ++F+G+L ACSH GL++ G ++F  MT EY I P I+HY CMVDLLGRAG L
Sbjct: 307 KEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRL 366

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           +EA   I+    +    LW  LL AC+T  N  + +RV ++I EL       YV+  N+ 
Sbjct: 367 DEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLC 426

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
              G+W+D   +R  M   G  K+PG S IE N+
Sbjct: 427 ARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNN 460



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 131/266 (49%), Gaps = 16/266 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM---YGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           LK+ K++ A  I      N  V +  ++          ++ +H++FD++ + N V  + +
Sbjct: 39  LKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQITQPNIVLFNTM 98

Query: 59  LQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            +GY +  D   +I  FR             LR  + + AL  GK++HC  ++     ++
Sbjct: 99  ARGYARLNDPLRMITHFRR-----------CLRLVSKVKALAEGKQLHCFAVKLGVSDNM 147

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            +   L+++Y  CG +D + ++F ++    ++ +N++I   A+N R  EAL +F ++ E 
Sbjct: 148 YVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEI 207

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KP  V+ + VLS+C+ +G +D GR       K+Y     ++    ++D+  + G L++
Sbjct: 208 GLKPTDVTMLVVLSSCALLGSLDLGR-WMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDD 266

Query: 239 AETLIENADCRHDSSLWEVLLGACTT 264
           A  +  +   R D+  W  ++ A  T
Sbjct: 267 AVNVFRDMPKR-DTQAWSAIIVAYAT 291


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 129/339 (38%), Positives = 199/339 (58%), Gaps = 11/339 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G ++H  +   GL G++ V++SL++MYGKCG ++ S  VF+ M +++  S SA++  
Sbjct: 101 IEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAA 160

Query: 62  YCQTGDFESVIRIFREM--------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +   G +   + +F EM        EE  L S   VL AC  L AL LG+  H   +R  
Sbjct: 161 HASLGMWSECLSVFGEMSREGSCRPEESILVS---VLSACTHLGALDLGRCTHVTLLRNI 217

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              +VI++++L+D+Y KCGC++    +F +M  +N ++++ MI+G A +GRG EAL++F 
Sbjct: 218 REMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFS 277

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           DM E G KPD V ++GVLSAC+H GL+D G + F  M  E+ I+P I+HY C+V L+GRA
Sbjct: 278 DMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRA 337

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
           G+L +A   I +   + +  +W  LL AC    N  + E  AK + EL       YV+L 
Sbjct: 338 GMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLS 397

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           N+Y    RW D  KIRT M   G  + PG S ++   K+
Sbjct: 398 NMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKI 436



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 152/292 (52%), Gaps = 14/292 (4%)

Query: 2   LKQGKEVHAKVITL--GLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           +++ K+VHA+V+      C  N+V   +L D     G +D +  +F ++ +  +   + +
Sbjct: 1   MEEFKQVHAQVLKWENSFCASNLVATCALSDW----GSMDYACSIFRQIDQPGTFEFNTM 56

Query: 59  LQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           ++GY    + E+ + ++ EM     E D F++  + +ACA L ++  G ++H    +R  
Sbjct: 57  IRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGL 116

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D+ ++++L+++Y KCG ++ +  +F  M  R++ +W+++I+  A  G   E L +F +
Sbjct: 117 EGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGE 176

Query: 175 MT-EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           M+ EG  +P+    + VLSAC+H+G +D GR    ++ +  R    I   + ++D+  + 
Sbjct: 177 MSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTS-LIDMYVKC 235

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPD 284
           G +E+  +L +    ++  S   ++ G     R     +  +  + E LKPD
Sbjct: 236 GCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPD 287


>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
          Length = 447

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/313 (39%), Positives = 193/313 (61%), Gaps = 5/313 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  ++++D Y + G V+ + ++FD+ML ++ +S +A++ G+ + G  E  +  FREM+
Sbjct: 86  NSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWFREMQ 145

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               + D  +    L AC  L AL  G  +H   + +    +V + ++L+DLY +CGCV+
Sbjct: 146 ISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVE 205

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           FA Q+F +M  R +++WNS+I GFA NG   E+L  F  M E G KPD V+F G L+ACS
Sbjct: 206 FARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTFTGALTACS 265

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H+GL++ G ++F +M ++YRI P+IEHY C+VDL  RAG LE+A  ++++   + +  + 
Sbjct: 266 HVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDALKVVQSMPMKPNEVVI 325

Query: 256 EVLLGACTTF-RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
             LL AC     N  +AER+ K + +L    H +YV+L N+Y A G+W  A K+R  MK 
Sbjct: 326 GSLLAACKNHGNNTLLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKG 385

Query: 315 SGVKKMPGKSWIE 327
            G+KK PG S IE
Sbjct: 386 LGLKKQPGFSSIE 398



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 96/173 (55%), Gaps = 6/173 (3%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K+ +  + ++D Y + G V+ A ++F +M  R+LI+W +M++GF + G  EEAL  F +M
Sbjct: 85  KNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWFREM 144

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G KPD+V+ I  L+AC+++G +  G   H   M+++++   ++   N ++DL  R G
Sbjct: 145 QISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNVRVS--NSLIDLYCRCG 202

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDC 285
            +E A  + +  + R   S   V++G      NAH +    +K+ E   KPD 
Sbjct: 203 CVEFARQVFDKMEKRTVVSWNSVIVGFAAN-GNAHESLFYFRKMQEEGFKPDA 254



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 8/169 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  +H  V++     NV V +SL+D+Y +CG V+ + +VFDKM K+  VS ++++ G
Sbjct: 169 LSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVG 228

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G+    +  FR+M+E     D  +F   L AC+ +  +  G   + Q ++R     
Sbjct: 229 FAANGNAHESLFYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLR-YFQTMKRDYRIS 287

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNG 163
             IE    +VDLY++ G ++ A ++   MP++ N +   S+++    +G
Sbjct: 288 PRIEHYGCIVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACKNHG 336


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 123/316 (38%), Positives = 190/316 (60%), Gaps = 4/316 (1%)

Query: 16  GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
           G+  NV V +SL+DMY KCG ++ ++ +F  M +K+ VS S ++QGY   G  +  + +F
Sbjct: 245 GMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLF 304

Query: 76  REME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131
            +M+    + D ++   VL ACA L AL LG        R     + ++ +AL+D+Y+KC
Sbjct: 305 FQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKC 364

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           G V  A +IF  M  ++ + WN+M+ G + NG  +    +F  + + G +PD  +FIG+L
Sbjct: 365 GSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLL 424

Query: 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
             C+H G ++ GR+ F +M + + + P IEHY CMVDLLGRAGLL EA  LI N   + +
Sbjct: 425 CGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPN 484

Query: 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311
           + +W  LLG C   ++ H+AE+V KK++EL+P    +YV L N+Y    RW +A KIR+ 
Sbjct: 485 AVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRST 544

Query: 312 MKYSGVKKMPGKSWIE 327
           MK   ++K+   SWIE
Sbjct: 545 MKEQQIQKIRACSWIE 560



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 152/264 (57%), Gaps = 10/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G ++H+ ++  G   +V V++SL+ +Y KC   D++ +VFD +  KN VS +A++ G
Sbjct: 130 VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITG 189

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           Y  +G F   I  F+++ E+    D FS   VL ACA L     G+ +  +YI  SG  +
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWID-RYISDSGMGR 248

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V + ++L+D+Y KCG ++ A+ IF  MP +++++W++MI G+A NG  ++AL +F  M 
Sbjct: 249 NVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQ 308

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGL 235
               KPD  + +GVLSAC+ +G +D G    + M + E+   P +     ++D+  + G 
Sbjct: 309 SENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGS 366

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           + +A  +   A  + D  +W  ++
Sbjct: 367 VTQAWEIF-TAMKKKDRVVWNAMM 389



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 34/304 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             Q K +HA+++ L L  +  + + ++      G  + S  VF ++ + N    + +++G
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                 F+  I ++  M       + F+   VL+ACA    +RLG ++H   ++     D
Sbjct: 89  LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V ++++L+ LY KC   D A ++F  +P +N+++W ++I+G+  +G   EA+  F  + E
Sbjct: 149 VFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLE 208

Query: 178 GGTKPDHVSFIGVLSACSHMG------LIDR-------GRKHFASMTKEYRIKPKIEHYN 224
            G KPD  S + VL+AC+ +G       IDR       GR  F + +             
Sbjct: 209 MGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATS------------- 255

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG--ACTTFRNAHVAERVAKKIMELK 282
            ++D+  + G LE A  LI +A    D   W  ++   A        +      +   LK
Sbjct: 256 -LLDMYVKCGNLERA-NLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLK 313

Query: 283 PDCH 286
           PDC+
Sbjct: 314 PDCY 317


>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
          Length = 485

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 131/317 (41%), Positives = 199/317 (62%), Gaps = 5/317 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  ++++D Y + G VD++ +VFD+M +++ +S +A++ G+ + G  E  +  FREM+
Sbjct: 128 NSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQ 187

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               + D  +    L ACA L AL  G  VH   + +    +V + ++L+DLY +CGCV+
Sbjct: 188 VSGVKPDYVAVIAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVE 247

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           FA Q+F +M  R +++WNS+I GFA NG   E+L  F  M E   KPD V+F G L+ACS
Sbjct: 248 FARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACS 307

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H+GL++ G ++F +M ++YRI P+IEHY C+VDL  RAG LEEA  ++E+   + +  + 
Sbjct: 308 HVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKVVESMPMKPNEVVI 367

Query: 256 EVLLGACTTFRN-AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
             LL AC T  N   +AER+ K++ ELK   H +YV+L N+Y A G+W  A K+R  MK 
Sbjct: 368 GSLLAACRTHGNDTELAERMMKRLSELKVKGHSNYVILSNMYAADGQWEGASKMRRKMKG 427

Query: 315 SGVKKMPGKSWIEANSK 331
            G+KK PG S IE + +
Sbjct: 428 LGLKKQPGFSSIEIDDR 444



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 10/175 (5%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K+ +  + ++D Y + G VD A ++F +MP R+LI+W +MI+GF + G  EEAL  F +M
Sbjct: 127 KNSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREM 186

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G KPD+V+ I  L+AC+++G +  G   H   ++++++   ++   N ++DL  R G
Sbjct: 187 QVSGVKPDYVAVIAALAACANLGALSFGLWVHRFVVSQDFKNNVRVS--NSLIDLYCRCG 244

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA--KKIME--LKPDC 285
            +E A  + +  + R   S   V++G      N H  E +   +++ E   KPD 
Sbjct: 245 CVEFARQVFDEMEKRTVVSWNSVIVGFAA---NGHAHESLVYFRRMQEERFKPDA 296



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 95/184 (51%), Gaps = 9/184 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VH  V++     NV V +SL+D+Y +CG V+ + +VFD+M K+  VS ++++ G
Sbjct: 211 LSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTVVSWNSVIVG 270

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     +  FR M+E     D  +F   L AC+ +  +  G   + + ++R     
Sbjct: 271 FAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACSHVGLVEEGVR-YFEAMKRDYRIS 329

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEE-ALRIFD 173
             IE    LVDLY++ G ++ A ++   MP++ N +   S+++    +G   E A R+  
Sbjct: 330 PRIEHYGCLVDLYSRAGRLEEALKVVESMPMKPNEVVIGSLLAACRTHGNDTELAERMMK 389

Query: 174 DMTE 177
            ++E
Sbjct: 390 RLSE 393



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           HQ   Q      ++W S I+  ++NGR  EA + F  M   G +P+H++ I +LS C+
Sbjct: 18  HQKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCA 75


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 128/329 (38%), Positives = 191/329 (58%), Gaps = 4/329 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GKE+H  ++   L   V V S++ DMY KCG +D ++  F +M + +S+  ++++  + Q
Sbjct: 467 GKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQ 526

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  + +FR+M     + D  S    L + A L AL  GKE+H   IR +   D  +
Sbjct: 527 NGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFV 586

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SAL+D+Y+KCG +  A  +F  M  +N ++WNS+I+ +  +G   E L +F +M   G 
Sbjct: 587 ASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGV 646

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            PDHV+F+ ++SAC H GL+  G  +F  MT+EY I  ++EHY CMVDL GRAG L EA 
Sbjct: 647 HPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAF 706

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I++     D+ +W  LLGAC    N  +A+  ++ ++EL P     YVLL NV+   G
Sbjct: 707 DAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAG 766

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
            W    K+R LMK  GV+K+PG SWI+ N
Sbjct: 767 EWGSVLKVRRLMKEKGVQKIPGYSWIDVN 795



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 129/251 (51%), Gaps = 11/251 (4%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH    +LG   ++ V S+L+ +Y   G + ++ RVFD++ +++++  + +L GY ++GD
Sbjct: 167 VHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGD 226

Query: 68  FESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
           F + +  F  M      ++  ++  +L  CA      LG +VH   I      D  + + 
Sbjct: 227 FNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANT 286

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           LV +Y+KCG +  A ++F  MP  + +TWN +I+G+ QNG  +EA  +F+ M   G KPD
Sbjct: 287 LVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPD 346

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA---- 239
            V+F   L +    G + R  K   S    +R+   +   + ++D+  + G +E A    
Sbjct: 347 SVTFASFLPSILESGSL-RHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIF 405

Query: 240 --ETLIENADC 248
              TL++ A C
Sbjct: 406 QQNTLVDVAVC 416



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 108/186 (58%), Gaps = 4/186 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  KEVH+ ++   +  +V ++S+L+D+Y K G V+ + ++F +    +    +A++ G
Sbjct: 363 LRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISG 422

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     I  FR + +  +     +   VL ACA LAAL+LGKE+HC  +++     
Sbjct: 423 YVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENI 482

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SA+ D+YAKCG +D A++ F +M   + I WNSMIS F+QNG+ E A+ +F  M  
Sbjct: 483 VNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGM 542

Query: 178 GGTKPD 183
            G K D
Sbjct: 543 SGAKFD 548



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 131/261 (50%), Gaps = 6/261 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH  VI  G   +  V ++LV MY KCG + ++ ++F+ M + ++V+ + L+ GY Q
Sbjct: 265 GTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQ 324

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  +    +F  M     + D  +F   L +     +LR  KEVH   +R     DV +
Sbjct: 325 NGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYL 384

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           +SAL+D+Y K G V+ A +IF Q  + ++    +MISG+  +G   +A+  F  + + G 
Sbjct: 385 KSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGM 444

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+ ++   VL AC+ +  +  G++    + K+ +++  +   + + D+  + G L+ A 
Sbjct: 445 VPNSLTMASVLPACAALAALKLGKELHCDILKK-QLENIVNVGSAITDMYAKCGRLDLAY 503

Query: 241 TLIENADCRHDSSLWEVLLGA 261
                     DS  W  ++ +
Sbjct: 504 EFFRRMS-ETDSICWNSMISS 523



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 126/265 (47%), Gaps = 8/265 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++Q ++VH ++I  G+     + S ++ +Y  CG + +   +F  +   N++  + +++G
Sbjct: 60  VQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRG 119

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G F+  +  + +M       D ++F  V++AC GL  + L   VH          D
Sbjct: 120 LYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVD 179

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + SAL+ LYA  G +  A ++F ++P R+ I WN M+ G+ ++G    A+  F  M  
Sbjct: 180 LFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRT 239

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             +  + V++  +LS C+  G    G + H   +   +   P++   N +V +  + G L
Sbjct: 240 SYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVA--NTLVAMYSKCGNL 297

Query: 237 EEAETLIENADCRHDSSLWEVLLGA 261
            +A  L  N   + D+  W  L+  
Sbjct: 298 FDARKLF-NTMPQTDTVTWNGLIAG 321



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 2/107 (1%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDV-IIESALVDLYAKCGCVDFAHQIFLQMPVR 147
           + RAC+  + ++  ++VH Q I   G  DV  + S ++ LY  CG +     +F  + + 
Sbjct: 50  LFRACSDASVVQQARQVHTQIIV-GGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELC 108

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           N + WN MI G    G  + AL  +  M      PD  +F  V+ AC
Sbjct: 109 NALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 155


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/330 (36%), Positives = 203/330 (61%), Gaps = 5/330 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G +VH+ V+  G   ++ V++SLV+ YGKC  +  + +VF++M  +N V+ +A++ G+ 
Sbjct: 110 EGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHA 169

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           + G  +  + +FREM+    + D  +   V+ ACA   AL +G  +H    +     D+ 
Sbjct: 170 RVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLE 229

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +ALVD+YAKCGC++ A Q+F+ MPV++   W+SMI GFA +G  ++A+  F  M E  
Sbjct: 230 LSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 289

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PDHV+F+ VLSAC+H GL+ RGR+ F S+  E+ I+P +EHY C VDLL R+GL+EEA
Sbjct: 290 VTPDHVTFLAVLSACAHGGLVSRGRR-FWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEA 348

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
             +        +++ W  LL  C   +  ++ E VA+ ++EL+P    +Y+++ N+Y ++
Sbjct: 349 YRITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSL 408

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
            +W    ++R +MK   +K +PG S IE +
Sbjct: 409 SQWEKMSELRKVMKEKCIKPVPGCSSIEVD 438



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 142/264 (53%), Gaps = 12/264 (4%)

Query: 6   KEVHAKVIT--LGLCGNVVVESSLVDM--YGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++HA ++T  L L       S +V        G ++ +  VF ++   N  S ++L++G
Sbjct: 5   RQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKG 64

Query: 62  YCQTGDF-ESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           Y Q     +  I +F+++ E      + F+   VL+ACA + A   G +VH   ++    
Sbjct: 65  YSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFG 124

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             + ++++LV+ Y KC  + FA ++F +MPVRNL+ W +MISG A+ G  +EA+ +F +M
Sbjct: 125 SSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREM 184

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G +PD ++ + V+SAC+  G +D G    A + K Y +   +E    +VD+  + G 
Sbjct: 185 QKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEK-YFVLTDLELSTALVDMYAKCGC 243

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           +E A+ +  +   + D++ W  ++
Sbjct: 244 IERAKQVFVHMPVK-DTTAWSSMI 266


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 133/340 (39%), Positives = 209/340 (61%), Gaps = 13/340 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GK+ HA ++ LG   +V + +SL+  Y  CG ++ +  VFDKM +++ VS +A++  
Sbjct: 142 LFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDA 201

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           +   G+FE+ +++F + +    E D ++   V+ ACAGL AL LG   H   +R  G   
Sbjct: 202 FVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSV 261

Query: 117 ---DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
               V++ ++L+D+Y KCG +D A QIF  M   ++ +WNSMI GFA +G+GE AL  F+
Sbjct: 262 ARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFE 321

Query: 174 DMTE-GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            M       P+ ++F+GVLSAC+H  +++ GRK+F  M  EY+I+P++EHY C+VD+L R
Sbjct: 322 RMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILAR 381

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHV--AERVAKKIMEL-KPDCHLSY 289
           AGL++EA  L+ +   + D  +W  LL +C   +NA V  +E +A++I+E  + D    Y
Sbjct: 382 AGLIDEALELVASMPMKPDVVIWRSLLDSCCK-KNASVELSENIARQILESEEADSSGVY 440

Query: 290 VLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           VLL  VY +  RWND   +R LM  +G+ K PG S IE +
Sbjct: 441 VLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVD 480



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 134/278 (48%), Gaps = 28/278 (10%)

Query: 2   LKQGKEVHAKVI---------TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS 52
           + Q K++HA  +         TL L   ++  SSL D+       + ++RVFD++   NS
Sbjct: 35  MSQLKQIHALSLRSTLPNHSTTLFLYSRILHFSSLHDL-------NYAYRVFDQVDNPNS 87

Query: 53  VSSSALLQGYCQTGDFE---SVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKE 104
              + L++   Q+         I ++  M +      D  +F  VL+ACA L AL  GK+
Sbjct: 88  FMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQ 147

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
            H   ++     DV I ++L+  YA CG ++ A  +F +MP R+L++WN+MI  F   G 
Sbjct: 148 AHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGE 207

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY- 223
            E AL++F    +   +PD  +   V++AC+ +  +  G    A + +   +    +H  
Sbjct: 208 FETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVL 267

Query: 224 --NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
             N ++D+  + G L+ A  + E    +HD + W  ++
Sbjct: 268 VNNSLLDMYCKCGSLDIATQIFEGMQ-KHDVTSWNSMI 304


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 126/331 (38%), Positives = 195/331 (58%), Gaps = 5/331 (1%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VH   I +GL   + VE++L+D Y KCG V  S +VFD M +K+ VS ++++  Y Q G 
Sbjct: 214 VHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGL 273

Query: 68  FESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
                 +F  M      + +  +   +L ACA   ALR+G  +H Q I+     +VI+ +
Sbjct: 274 STDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMAT 333

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
           +++D+Y KCG  + A   F  M  +N+ +W +MI+G+  +G   EAL +F  M   G KP
Sbjct: 334 SIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKP 393

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
           ++++FI VL+ACSH G ++ G + F +M+ EY ++P +EHY CMVDLLGRAG ++EA  L
Sbjct: 394 NYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNL 453

Query: 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302
           I++   R D  LW  LL AC   ++  +AE  A+++ +L P     YVLL N+Y   GRW
Sbjct: 454 IKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRW 513

Query: 303 NDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            D  ++R L+K  G+ K PG S +E   +++
Sbjct: 514 KDVERMRILVKDRGLVKPPGYSLVELKGRVH 544



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 118/216 (54%), Gaps = 14/216 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+ H + +  G   ++ V S+L+DMY KCG +  +  +FD++ ++N V+ ++L+ G
Sbjct: 98  LNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITG 157

Query: 62  YCQTGDFESVIRIFREM-------------EEIDLFSFGIVLRACAGLAALRLGKEVHCQ 108
           Y Q  D    + +F+E                +D  +   VL AC+ ++   + + VH  
Sbjct: 158 YVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGV 217

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
            I+    K + +E+ L+D YAKCG V  + ++F  M  +++++WNSMI+ +AQNG   +A
Sbjct: 218 AIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDA 277

Query: 169 LRIFDDMTE-GGTKPDHVSFIGVLSACSHMGLIDRG 203
             +F  M + GG K + V+   +L AC+H G +  G
Sbjct: 278 FEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVG 313



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 93/167 (55%), Gaps = 14/167 (8%)

Query: 43  VFDKMLKKNSVSS-SALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLA 97
           +F+K   +  V S ++L+    + GD    +R F  M ++D+     +F   +++C+ L 
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
            L  GK+ H Q +      D+ + SAL+D+Y+KCG +  A  +F ++P RN++TW S+I+
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 158 GFAQNGRGEEALRIFDDM----TEG-----GTKPDHVSFIGVLSACS 195
           G+ QN    EAL +F +     +EG     GT  D V+ I VLSACS
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACS 203



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  +H +VI +G   NV++ +S++DMY KCG  + +   FD M +KN  S +A++ G
Sbjct: 310 LRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAG 369

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLG----KEVHCQYIRRS 113
           Y   G     + +F +M     + +  +F  VL AC+    L  G      +  +Y    
Sbjct: 370 YGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEP 429

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISG 158
           G +       +VDL  + G +  A+ +   M V R+ + W S+++ 
Sbjct: 430 GVEHY---GCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAA 472



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-H 206
           ++ +WNS+I+  A+ G   E+LR F  M +   KP+  +F   + +CS +  ++ G++ H
Sbjct: 46  DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAH 105

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
             ++   +  +  +   + ++D+  + G L  A  L +    R +   W  L+       
Sbjct: 106 QQALV--FGFESDLFVSSALIDMYSKCGKLSNARVLFDEIP-RRNIVTWTSLITGYVQND 162

Query: 267 NAHVAERVAKKIM 279
           +AH A  V K+ +
Sbjct: 163 DAHEALMVFKEFL 175


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 132/338 (39%), Positives = 206/338 (60%), Gaps = 8/338 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GKE+HA ++  G   N+ V ++L+D+Y K G V  ++ VF  M  KN VS SA++  
Sbjct: 199 LQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIAC 258

Query: 62  YCQTGDFESVIRIFREM--EEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGC 115
           + +       + +F+ M  E  D     +    VL+ACAGLAAL  GK +H  YI R G 
Sbjct: 259 FAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIH-GYILRRGL 317

Query: 116 KDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             ++ + +AL+ +Y +CG +    ++F  M  R++++WNS+IS +  +G G++A++IF++
Sbjct: 318 DSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFEN 377

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G+ P ++SFI VL ACSH GL++ G+  F SM  +YRI P +EHY CMVDLLGRA 
Sbjct: 378 MIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRAN 437

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L+EA  LIE+       ++W  LLG+C    N  +AER +  + EL+P    +YVLL +
Sbjct: 438 RLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLAD 497

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +Y     W++A  +  L++  G++K+PG SWIE   K+
Sbjct: 498 IYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKV 535



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 141/269 (52%), Gaps = 12/269 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G +VH ++++ G   +  + + L++MY + G +D + +VFD+  ++     +AL + 
Sbjct: 94  LSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRA 153

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACA----GLAALRLGKEVHCQYIRRS 113
               G  + ++ ++ +M  I    D F++  VL+AC      ++ L+ GKE+H   +R  
Sbjct: 154 LAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHG 213

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              ++ + + L+D+YAK G V +A+ +F  MP +N ++W++MI+ FA+N    +AL +F 
Sbjct: 214 YEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQ 273

Query: 174 DMT--EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
            M      + P+ V+ + VL AC+ +  +++G+     + +   +   +   N ++ + G
Sbjct: 274 LMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRR-GLDSILPVLNALITMYG 332

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLG 260
           R G +   + + +N   R D   W  L+ 
Sbjct: 333 RCGEILMGQRVFDNMKNR-DVVSWNSLIS 360



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 69/141 (48%)

Query: 54  SSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +++ L+Q  C+ G+ +  I +          +F  ++ +CA   +L  G +VH + +   
Sbjct: 49  NNNQLIQSLCKGGNLKQAIHLLCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSG 108

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
             +D  + + L+++Y + G +D A ++F +   R +  WN++    A  G G+E L ++ 
Sbjct: 109 FDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYV 168

Query: 174 DMTEGGTKPDHVSFIGVLSAC 194
            M   G   D  ++  VL AC
Sbjct: 169 QMNWIGIPSDRFTYTFVLKAC 189


>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 213/367 (58%), Gaps = 41/367 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K  ++VH     +G   N+++ ++L+D YGKCG  + S  +F  M++K++VS ++++  
Sbjct: 228 VKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVT 287

Query: 62  YCQTGDFESVIRIFREM----------------------EEIDLF-------------SF 86
           Y +    +   ++F EM                      E +++F             +F
Sbjct: 288 YTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTF 347

Query: 87  GIVLRACAGLAALRLGKEVHCQYIR-RSGCK--DVIIESALVDLYAKCGCVDFAHQIF-L 142
             VL ACA  A +  GK+VHCQ IR RS     +V + +AL+D+YAKCG +  A  +F +
Sbjct: 348 VSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEM 407

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
            + V+++++WN++I+GFAQNGRGE++L +FD M E   +P+HV+F+GVLSAC+H GL++ 
Sbjct: 408 MIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNA 467

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA--DCRHDSSLWEVLLG 260
           G +   SM + Y +KPK  HY  ++DLLGR   LEEA  LIE    +  +  ++W  +LG
Sbjct: 468 GLELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLG 527

Query: 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320
            C    N  +A + A+ +  L+P+    YV+L N+Y A GRW+D  +IR +MK  G+KK 
Sbjct: 528 GCRVHGNLELARKAAEALFALEPENTGRYVMLSNIYAASGRWSDTNRIRNVMKERGLKKE 587

Query: 321 PGKSWIE 327
           P  S IE
Sbjct: 588 PAFSRIE 594



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 147/328 (44%), Gaps = 70/328 (21%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--------------------------- 34
           LK GK +H+++I   L     + + L+D+Y KC                           
Sbjct: 94  LKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLPNKTTRTWNTLLSF 153

Query: 35  ----GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE------IDLF 84
               G+ ++++++FD+M ++N VS ++L+ G  +    +  ++ FREM+       +D F
Sbjct: 154 YSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQNGVGGLMLDEF 213

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG------C----- 133
           +   ++  C+ L  ++  ++VH          ++I+ +AL+D Y KCG      C     
Sbjct: 214 TLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSM 273

Query: 134 --------------------VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
                               +D A ++F +MPV+  ++W ++ISGF +NGR  EAL +F 
Sbjct: 274 VEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFH 333

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLG 231
            M + G  P   +F+ VL AC+   LI RG++    + +          Y  N ++D+  
Sbjct: 334 QMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYA 393

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLL 259
           + G ++ AE L E      D   W  L+
Sbjct: 394 KCGDMKSAENLFEMMIHVKDVVSWNTLI 421



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 120/288 (41%), Gaps = 51/288 (17%)

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            T DF S I  F  +           +  C    +L+ GK +H Q I+ +   +  + + 
Sbjct: 70  HTNDFSSTIEKFSSL-----------ISNCVSAKSLKHGKALHSQLIKTALFFETFLANG 118

Query: 124 LVDLYAKCGC-------------------------------VDFAHQIFLQMPVRNLITW 152
           L+DLY+KCGC                                + A+++F +MP RNL+++
Sbjct: 119 LIDLYSKCGCKESIHKAFDDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSY 178

Query: 153 NSMISGFAQNGRGEEALRIFDDMTE--GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFAS 209
           NS+ISG  ++   +EA++ F +M    GG   D  + + ++S CS +  +   R+ H  +
Sbjct: 179 NSLISGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVA 238

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
               +R    +   N ++D  G+ G    +  L  +     D+  W  ++    T+  A 
Sbjct: 239 TIVGFRTNLILN--NALIDAYGKCGEPNSSFCLFRSM-VEKDAVSWTSMV---VTYTRAS 292

Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
             +   K   E+     +S+  L + +   GR  +A ++   M   GV
Sbjct: 293 RIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGV 340


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 122/328 (37%), Positives = 203/328 (61%), Gaps = 6/328 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VHA+++   +  +V + SS++DMYGKCG V      FD++  +N VS ++++  Y Q
Sbjct: 243 GKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQ 302

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVI 119
              FE  + +F +ME      + ++  ++  + AGL+AL LG ++H +   +SG K +V+
Sbjct: 303 NEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHAR-AEKSGLKGNVM 361

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+ +Y K G +  A  +F  M   N+ITWN++I+G + +G G+EAL +F DM   G
Sbjct: 362 VGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATG 421

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +P++V+FIGV+ AC+H+ L+D G  +F  + K++RI P +EHY C+V LL R+G L+EA
Sbjct: 422 ERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEA 481

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
           E  + +     D   W  LL AC   ++     ++A+ +++L+P    +Y+LL N++  V
Sbjct: 482 ENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARV 541

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            RW+   +IR LM+   VKK PG SW+E
Sbjct: 542 RRWDHVVEIRKLMRERNVKKEPGVSWLE 569



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 120/249 (48%), Gaps = 5/249 (2%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +GK+ H   +  GL  +  V+++L+ +Y KC  V  + ++   +   +    + ++ G  
Sbjct: 141 EGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLL 200

Query: 64  QTGDFESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q       + + +    E  E +  ++  + R CA L  + LGK+VH Q ++     DV 
Sbjct: 201 QHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVY 260

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           I S+++D+Y KCG V      F ++  RN+++W S+I+ + QN   EEAL +F  M    
Sbjct: 261 IGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDC 320

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             P+  +   + ++ + +  +  G +  A   K   +K  +   N ++ +  ++G +  A
Sbjct: 321 IPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKS-GLKGNVMVGNALIIMYFKSGDILAA 379

Query: 240 ETLIENADC 248
           +++  N  C
Sbjct: 380 QSVFSNMTC 388



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 15/280 (5%)

Query: 2   LKQGKEVHAKVITLGLC---GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           LK G+ +HA +           V   +SL+++Y KC  V  + ++FD M ++N VS SAL
Sbjct: 35  LKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSAL 94

Query: 59  LQGYCQTGDFESVIRIFREMEEID-----LFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           + GY Q G+   V  +F++M   D      +     + +C     +  GK+ H  Y  +S
Sbjct: 95  MAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYVE-GKQCH-GYALKS 152

Query: 114 GCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           G +    +++AL+ LY+KC  V  A QI   +P  ++  +N +++G  Q+    EA+ + 
Sbjct: 153 GLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVL 212

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
             +   G + ++ +++ +   C+ +  I  G++  A M K   I   +   + ++D+ G+
Sbjct: 213 KLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKS-DIDCDVYIGSSIIDMYGK 271

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272
            G +    T  +    R+  S W  ++ A   F+N    E
Sbjct: 272 CGNVLSGRTFFDRLQSRNVVS-WTSIIAA--YFQNEFFEE 308



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 4/110 (3%)

Query: 89  VLRACAGLAALRLGKEVHCQY-IRRSGCKDVIIE--SALVDLYAKCGCVDFAHQIFLQMP 145
           +L+  A    L+ G+ +H    I     +D  +   ++L++LY KC  V  A ++F  MP
Sbjct: 25  LLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMP 84

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSAC 194
            RN+++W+++++G+ QNG   E   +F  M  +    P+       +S+C
Sbjct: 85  RRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSC 134


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 125/327 (38%), Positives = 196/327 (59%), Gaps = 4/327 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H  V+ +G   +V V ++L+D+Y KC  +D + ++F ++  KN VS + ++ GY  
Sbjct: 367 GEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYEN 426

Query: 65  TGDFESVIRIFRE----MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G+    + +FRE       +   +F   L ACA LA++ LG +VH   I+ +  K V +
Sbjct: 427 LGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAV 486

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L+D+YAKCG +  A  +F +M   ++ +WN++ISG++ +G G +ALRIFD M     
Sbjct: 487 SNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDC 546

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ ++F+GVLS CS+ GLID+G+  F SM  ++ I+P +EHY CMV L GR+G L++A 
Sbjct: 547 KPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAM 606

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            LIE         +W  +L A     N   A R A++I+++ P    +YVLL N+Y    
Sbjct: 607 NLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAK 666

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           +W +   IR  MK  GVKK PG SWIE
Sbjct: 667 QWANVASIRKSMKEKGVKKEPGLSWIE 693



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            K VH +++      +  V   L+ +Y + G + ++ +VF++M K + V  S ++  +CQ
Sbjct: 266 AKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQ 325

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     + IF  M E     + F+   +L  CA      LG+++H   ++     DV +
Sbjct: 326 NGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYV 385

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+YAKC  +D A ++F ++  +N+++WN++I G+   G G +AL +F +      
Sbjct: 386 SNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQV 445

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
               V+F   L AC+ +  ++ G +      K    K ++   N ++D+  + G ++ A+
Sbjct: 446 SVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAK-RVAVSNSLIDMYAKCGDIKVAQ 504

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281
           T+    +   D + W  L+   +T    H   R A +I ++
Sbjct: 505 TVFNEMETI-DVASWNALISGYST----HGLGRQALRIFDI 540



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 100/192 (52%), Gaps = 4/192 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           +H+ ++ LG   N  V ++L++ Y  CG VD +  VF+ +L K+ V  + ++  Y + G 
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGC 227

Query: 68  FESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
           FE  +++   M       + ++F   L+A  GL A    K VH Q ++     D  +   
Sbjct: 228 FEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVG 287

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L+ LY + G +  A ++F +MP  +++ W+ MI+ F QNG   +A+ IF  M EG   P+
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPN 347

Query: 184 HVSFIGVLSACS 195
             +   +L+ C+
Sbjct: 348 EFTLSSILNGCA 359



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 103/218 (47%), Gaps = 1/218 (0%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
             K +H  ++  G C ++   + L++ Y K G   ++  +FD+M ++N+VS   L QGY 
Sbjct: 67  SAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA 126

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
                    R+ RE  E++   F   L+    L    +   +H   ++     +  + +A
Sbjct: 127 CQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAA 186

Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
           L++ Y+ CG VD A  +F  +  ++++ W  ++S + +NG  E++L++   M   G  P+
Sbjct: 187 LINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPN 246

Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKI 220
           + +F   L A   +G     +     + K  Y + P++
Sbjct: 247 NYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRV 284



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 139/335 (41%), Gaps = 41/335 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G +VH   I       V V +SL+DMY KCG +  +  VF++M   +  S +AL+ G
Sbjct: 465 MELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISG 524

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     +RIF  M+  D    G+    VL  C+    +  G++     I   G + 
Sbjct: 525 YSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEP 584

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG--------FAQ------ 161
            +   + +V L+ + G +D A  +   +P   +++ W +M+S         FA+      
Sbjct: 585 CLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEI 644

Query: 162 ---NGRGEEALRIFDDMTEGGTKPDHVSFI-------GVLSACSHMGLIDRGRKHFASMT 211
              N + E    +  +M  G  +  +V+ I       GV        +  +G  HF S+ 
Sbjct: 645 LKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVG 704

Query: 212 KEYRIKPKIEHYNCMVDLLG----RAGLLEEAET-LIENADCRHDSSLW---EVLLGACT 263
                 P ++  N M++ L     RAG + +    L++  D   D  LW   E L  A  
Sbjct: 705 SSDH--PDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYG 762

Query: 264 TFRNAHVAERV-AKKIMELKPDCHLSYVLLDNVYR 297
             R      R+   K + +  DCH +  ++ ++ +
Sbjct: 763 LVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQ 797


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 123/316 (38%), Positives = 190/316 (60%), Gaps = 4/316 (1%)

Query: 16  GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
           G+  NV V +SL+DMY KCG ++ ++ +F  M +K+ VS S ++QGY   G  +  + +F
Sbjct: 245 GMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLF 304

Query: 76  REME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131
            +M+    + D ++   VL ACA L AL LG        R     + ++ +AL+D+Y+KC
Sbjct: 305 FQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKC 364

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           G V  A +IF  M  ++ + WN+M+ G + NG  +    +F  + + G +PD  +FIG+L
Sbjct: 365 GSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLL 424

Query: 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
             C+H G ++ GR+ F +M + + + P IEHY CMVDLLGRAGLL EA  LI N   + +
Sbjct: 425 CGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPN 484

Query: 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311
           + +W  LLG C   ++ H+AE+V KK++EL+P    +YV L N+Y    RW +A KIR+ 
Sbjct: 485 AVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRST 544

Query: 312 MKYSGVKKMPGKSWIE 327
           MK   ++K+   SWIE
Sbjct: 545 MKEQQIQKIRACSWIE 560



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 152/264 (57%), Gaps = 10/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G ++H+ ++  G   +V V++SL+ +Y KC   D++ +VFD +  KN VS +A++ G
Sbjct: 130 VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITG 189

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K 116
           Y  +G F   I  F+++ E+    D FS   VL ACA L     G+ +  +YI  SG  +
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWID-RYISDSGMGR 248

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V + ++L+D+Y KCG ++ A+ IF  MP +++++W++MI G+A NG  ++AL +F  M 
Sbjct: 249 NVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQ 308

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGL 235
               KPD  + +GVLSAC+ +G +D G    + M + E+   P +     ++D+  + G 
Sbjct: 309 SENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGS 366

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           + +A  +   A  R D  +W  ++
Sbjct: 367 VTQAWEIF-TAMKRKDRVVWNAMM 389



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 34/304 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
             Q K +HA+++ L L  +  + + ++      G  + S  VF ++ + N    + +++G
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                 F+  I ++  M       + F+   VL+ACA    +RLG ++H   ++     D
Sbjct: 89  LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V ++++L+ LY KC   D A ++F  +P +N+++W ++I+G+  +G   EA+  F  + E
Sbjct: 149 VFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLE 208

Query: 178 GGTKPDHVSFIGVLSACSHMG------LIDR-------GRKHFASMTKEYRIKPKIEHYN 224
            G KPD  S + VL+AC+ +G       IDR       GR  F + +             
Sbjct: 209 MGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATS------------- 255

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG--ACTTFRNAHVAERVAKKIMELK 282
            ++D+  + G LE A  LI +A    D   W  ++   A        +      +   LK
Sbjct: 256 -LLDMYVKCGNLERA-NLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLK 313

Query: 283 PDCH 286
           PDC+
Sbjct: 314 PDCY 317


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 197/349 (56%), Gaps = 29/349 (8%)

Query: 8    VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
            +H  ++  G   +  V+++L+DMY + G V+ S  +F +M K++ VS + ++ G    G 
Sbjct: 659  IHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGR 718

Query: 68   FESVIRIFREMEE------IDLF----------------SFGIVLRACAGLAALRLGKEV 105
            ++  + +  EM+        D F                +   VL  CA LAAL  GKE+
Sbjct: 719  YDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEI 778

Query: 106  HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
            H   +++    DV + SALVD+YAKCGC++ A ++F QMP+RN+ITWN +I  +  +G+G
Sbjct: 779  HAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKG 838

Query: 166  EEALRIFDDMTEGG------TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219
            EEAL +F  MT GG       +P+ V++I + +ACSH G++D G   F +M   + ++P+
Sbjct: 839  EEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPR 898

Query: 220  IEHYNCMVDLLGRAGLLEEAETLIENADCR-HDSSLWEVLLGACTTFRNAHVAERVAKKI 278
             +HY C+VDLLGR+G ++EA  LI       +    W  LLGAC   ++    E  AK +
Sbjct: 899  GDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHL 958

Query: 279  MELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
              L+P+    YVL+ N+Y + G W+ A  +R  MK  GV+K PG SWIE
Sbjct: 959  FVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIE 1007



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 120/208 (57%), Gaps = 8/208 (3%)

Query: 5   GKEVHAKVITLGLC--GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           GK++HA V   G     +V V +SLV+MYGKCG +  + +VFD +  ++ VS ++++   
Sbjct: 349 GKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATL 408

Query: 63  CQTGDFESVIRIFREM--EEIDLFSFGIV--LRACAGL-AALRLGKEVHCQYIRRSGCKD 117
           C+  ++E  + +FR M  E +D  SF +V    AC+ +   +RLGK+VH  Y  R+G   
Sbjct: 409 CRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHA-YTLRNGDLR 467

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
               +ALV +YA+ G V+ A  +F     ++L++WN++IS  +QN R EEAL     M  
Sbjct: 468 TYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIV 527

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            G +PD V+   VL ACS +  +  GR+
Sbjct: 528 DGVRPDGVTLASVLPACSQLERLRIGRE 555



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 141/285 (49%), Gaps = 26/285 (9%)

Query: 1   RLKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           RL+ G+E+H   +  G L  N  V ++LVDMY  C    +   VFD ++++     +ALL
Sbjct: 549 RLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALL 608

Query: 60  QGYCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
            GY +    +  +R+F EM     F     +F  VL AC         + +H   ++R  
Sbjct: 609 AGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGF 668

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            KD  +++AL+D+Y++ G V+ +  IF +M  R++++WN+MI+G    GR ++AL +  +
Sbjct: 669 GKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHE 728

Query: 175 MT----------------EGGT--KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216
           M                 +GG   KP+ V+ + VL  C+ +  + +G++  A   K+ ++
Sbjct: 729 MQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQ-KL 787

Query: 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
              +   + +VD+  + G L  A  + +    R +   W VL+ A
Sbjct: 788 AMDVAVGSALVDMYAKCGCLNLASRVFDQMPIR-NVITWNVLIMA 831



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 128/268 (47%), Gaps = 11/268 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK+VHA  +  G        ++LV MY + G V+++  +F     K+ VS + ++  
Sbjct: 450 VRLGKQVHAYTLRNGDL-RTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISS 508

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG--C 115
             Q   FE  +     M       D  +   VL AC+ L  LR+G+E+HC Y  R+G   
Sbjct: 509 LSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHC-YALRNGDLI 567

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           ++  + +ALVD+Y  C        +F  +  R +  WN++++G+A+N   ++ALR+F +M
Sbjct: 568 ENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEM 627

Query: 176 -TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
            +E    P+  +F  VL AC    +          + K    K K    N ++D+  R G
Sbjct: 628 ISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQ-NALMDMYSRMG 686

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGAC 262
            +E ++T+    + R D   W  ++  C
Sbjct: 687 RVEISKTIFGRMNKR-DIVSWNTMITGC 713



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 10/213 (4%)

Query: 58  LLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIR-- 111
           LL+    +  F   I  +  M       D F+F  VL+A A +  L LGK++H    +  
Sbjct: 301 LLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFG 360

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
            +    V + ++LV++Y KCG +  A Q+F  +P R+ ++WNSMI+   +    E +L +
Sbjct: 361 HAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHL 420

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
           F  M      P   + + V  ACSH+ G +  G++  A   +   ++      N +V + 
Sbjct: 421 FRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTN--NALVTMY 478

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
            R G + +A+ L    D + D   W  ++ + +
Sbjct: 479 ARLGRVNDAKALFGVFDGK-DLVSWNTVISSLS 510



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 48/250 (19%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +GKE+HA  +   L  +V V S+LVDMY KCG ++ + RVFD+M  +N ++ + L+  
Sbjct: 772 LGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMA 831

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           Y   G  E  + +FR M               AG  + R       + IR +       E
Sbjct: 832 YGMHGKGEEALELFRIM--------------TAGGGSNR-------EVIRPN-------E 863

Query: 122 SALVDLYAKC---GCVDFAHQIFLQMPVRNLIT-----WNSMISGFAQNGRGEEALRIFD 173
              + ++A C   G VD    +F  M   + +      +  ++    ++GR +EA  + +
Sbjct: 864 VTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELIN 923

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGR---KHFASMTKEYRIKPKI-EHYNCMVDL 229
            M     K D  ++  +L AC     ++ G    KH       + ++P +  HY  M ++
Sbjct: 924 TMPSNLNKVD--AWSSLLGACRIHQSVEFGEIAAKHL------FVLEPNVASHYVLMSNI 975

Query: 230 LGRAGLLEEA 239
              AGL ++A
Sbjct: 976 YSSAGLWDQA 985


>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
          Length = 489

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 125/313 (39%), Positives = 194/313 (61%), Gaps = 5/313 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  ++++D Y + G VD + ++FDKM +++ +S +A++ G+ + G  E  +  FREM+
Sbjct: 128 NSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQ 187

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               + D  +    L AC  L AL  G  VH   + +    +V + ++L+DLY +CGCV+
Sbjct: 188 ISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVE 247

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           FA ++F +M  R +++WNS+I GFA NG   E+L  F  M E G KPD V+F G L+ACS
Sbjct: 248 FAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACS 307

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H+GL++ G ++F +M +++RI P+IEHY C+VDL  RAG LEEA  ++++   + +  + 
Sbjct: 308 HVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMPMKPNEVVI 367

Query: 256 EVLLGACTTFRNAHV-AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
             LL AC T  N  V AER+ K + ++    H +YV+L N+Y A G+W  A ++R  MK 
Sbjct: 368 GSLLAACRTHGNNTVLAERLMKHLSDVNVKGHSNYVILSNMYAADGKWEGASQMRRKMKG 427

Query: 315 SGVKKMPGKSWIE 327
            G+KK PG S IE
Sbjct: 428 LGLKKQPGFSSIE 440



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 97/173 (56%), Gaps = 6/173 (3%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K+ +  + ++D Y + G VD A ++F +MP R+LI+W +MI+GF + G  EEAL  F +M
Sbjct: 127 KNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREM 186

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G KPD+V+ I  L+AC+++G +  G   H   M+++++   K+   N ++DL  R G
Sbjct: 187 QISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVS--NSLIDLYCRCG 244

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDC 285
            +E A  + +  + R   S   V++G      NAH +    +K+ E   KPD 
Sbjct: 245 CVEFAREVFDKMEKRTVVSWNSVIVGFAAN-GNAHESLVYFRKMQEEGFKPDA 296



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 8/169 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VH  V++     NV V +SL+D+Y +CG V+ +  VFDKM K+  VS ++++ G
Sbjct: 211 LSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVG 270

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G+    +  FR+M+E     D  +F   L AC+ +  +  G   + Q ++R     
Sbjct: 271 FAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLR-YFQTMKRDHRIS 329

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNG 163
             IE    LVDLY++ G ++ A ++   MP++ N +   S+++    +G
Sbjct: 330 PRIEHYGCLVDLYSRAGRLEEALKVVQSMPMKPNEVVIGSLLAACRTHG 378


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 135/402 (33%), Positives = 213/402 (52%), Gaps = 70/402 (17%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-------------- 47
           L++GK++H ++I   L GNV V ++L D+Y +CG +D++ R+FD+M              
Sbjct: 171 LRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG 230

Query: 48  ---------------------LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEID---- 82
                                LK + V++S++L  Y Q G  +   ++F E+ E D    
Sbjct: 231 YLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCW 290

Query: 83  ------------------LFS-------------FGIVLRACAGLAALRLGKEVHCQYIR 111
                             LFS                V+ +CA LA+L  G+ VH +   
Sbjct: 291 TIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFL 350

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                D+++ SALVD+Y KCG    A  IF  M  RN+++WNSMI G+A NG+  EAL +
Sbjct: 351 MGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSL 410

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           +++M E   KPD V+F+GVLSAC H GL++ G+++F SM+ ++ ++P  +HY CMV+L G
Sbjct: 411 YENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFG 470

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVL 291
           R+G +++A  LI +     +S +W  +L  C    +    E  A+ ++EL P   + Y++
Sbjct: 471 RSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIM 530

Query: 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           L N+Y A GRW D   IR+LMK   VKK    SWIE +++++
Sbjct: 531 LSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVH 572



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 156/299 (52%), Gaps = 9/299 (3%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL- 83
           ++++ +Y K GLV++   +FD M  ++SVS + ++ G+   G     + +F  M++  L 
Sbjct: 93  NAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLK 152

Query: 84  ---FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
              ++   VL AC  L  LR GK++H + I  +   +V + +AL DLYA+CG +D A ++
Sbjct: 153 PTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRL 212

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F +M +RN++TWN MISG+ +N + E+ + +F +M     KPD V+   VL A    G I
Sbjct: 213 FDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYI 272

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           D  RK F  + ++  +   I    C  +      LL  +E L+ENA  R D      ++ 
Sbjct: 273 DEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENA--RPDGYTISSVVS 330

Query: 261 ACTTFRNAHVAERVAKK--IMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
           +C    + +  + V  K  +M +  D  +S  L+D +Y   G   DA+ I + M+   V
Sbjct: 331 SCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVD-MYCKCGVTRDAWTIFSTMQTRNV 388



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 43/237 (18%)

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
            RA     A RL   +H    + +   D  I + L++LYAK G +  A ++F +M  R+ 
Sbjct: 33  FRASDVDQAKRLKSHMHLHLFKPN---DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDN 89

Query: 150 ITWNSMI-------------------------------SGFAQNGRGEEALRIFDDMTEG 178
            +WN+M+                               SGFA NGRG  AL +F  M + 
Sbjct: 90  FSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKE 149

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KP   + + VL+AC+ +  + RG++    +     +   +   N + DL  R G +++
Sbjct: 150 GLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIII-CNLGGNVFVCNALTDLYARCGEIDQ 208

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           A  L +    R+  + W +++       + ++  R  +K ++L  +  +S +  D V
Sbjct: 209 ARRLFDRMVIRNVVT-WNLMI-------SGYLKNRQPEKCIDLFHEMQVSNLKPDQV 257


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 196/332 (59%), Gaps = 6/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G+ VH++V   GL  +V+V ++LV+MYGKC  V+E+   F+K+ + N VS SA+L  
Sbjct: 26  LEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLAA 85

Query: 62  YCQTGDFESVIRIFREMEEI------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           Y Q G     + ++REM         +  +F  +L AC+ L AL  G+++H     R   
Sbjct: 86  YAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFD 145

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D+++ +ALV+ Y +CG +  A  +F  M  R++I+W+SMIS FAQ GR +EA+ ++  M
Sbjct: 146 TDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRM 205

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              GT PD + FI VL ACS+ G+++     F S+  + +++P +EHY CMVD+LGRAG 
Sbjct: 206 LSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGK 265

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           L +AE L+          L+  +L AC  + +    E  A+ + EL P+    Y+ L N+
Sbjct: 266 LRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANI 325

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           Y A  R  DA +IR LM+  G+KK PG SWIE
Sbjct: 326 YSAAKRPKDAARIRKLMEERGIKKKPGCSWIE 357



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 4/179 (2%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           ++  VL       +L  G+ VH +        DVI+ +ALV++Y KC  V+ A   F ++
Sbjct: 12  TYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEKI 71

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG--GTKPDHVSFIGVLSACSHMGLIDR 202
              N+++W++M++ +AQNG    AL ++ +M     G  P+ V+FI +L ACS +G +  
Sbjct: 72  SRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAE 131

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           GRK  A++  E      +   N +V+  GR G L +A+ + +    R D   W  ++ A
Sbjct: 132 GRKIHAAVA-ERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMR-RRDVISWSSMISA 188


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 129/331 (38%), Positives = 194/331 (58%), Gaps = 7/331 (2%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+ VH   +  G +  +V V S+LVDMY KCG  D++ +VF++M  +N VS  AL+ GY 
Sbjct: 223 GRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYV 282

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DV 118
           Q   ++  +++F+EM     E +  +    L ACA L +L  G+ +H +Y+ RS    + 
Sbjct: 283 QCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLH-EYVDRSKLGLNS 341

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +ALVD+Y+KCGCVD A  +F ++P +++  W +MI+G A  G    +L +F  M   
Sbjct: 342 KLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRS 401

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             +P+ V+F+GVLSAC+H GL+D G + F  M  +YR++P ++HY CMVDLLGRAG LEE
Sbjct: 402 RVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEE 461

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   IE+        +W  L   C   +   + E +   +++L+P     Y+LL N+Y  
Sbjct: 462 AIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSR 521

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
             +W  A  +R LMK  GV K PG SWIE N
Sbjct: 522 CQKWEAAANVRRLMKGKGVDKSPGCSWIEVN 552



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 143/263 (54%), Gaps = 17/263 (6%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           + +A ++  GL  +  V++SLV  +  CG VD S R+F +  KK+ VS +AL+ G  + G
Sbjct: 124 QFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNG 183

Query: 67  DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG--CKDVII 120
                +  F EM     E+D  +   VL A A L  +  G+ VH  Y+  SG    DV +
Sbjct: 184 RAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYV-ESGRVIWDVYV 242

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVD+Y+KCG  D A ++F +MP RNL++W ++I+G+ Q  R +EAL++F +M   G 
Sbjct: 243 GSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGI 302

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI----EHYNCMVDLLGRAGLL 236
           +P+  +    L+AC+ +G +D+GR        EY  + K+    +    +VD+  + G +
Sbjct: 303 EPNQSTVTSALTACAQLGSLDQGR-----WLHEYVDRSKLGLNSKLGTALVDMYSKCGCV 357

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           +EA  + E    + D   W  ++
Sbjct: 358 DEALLVFEKLPAK-DVYPWTAMI 379



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 113/237 (47%), Gaps = 17/237 (7%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAA 98
           +FD++        + +++G+  +   + V+  +  +       D  +F ++L+A +    
Sbjct: 60  LFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFS---- 115

Query: 99  LRLGKEVHCQY---IRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS 154
            +L  E   Q+   I + G   D  ++++LV  +A CG VD + ++F++   +++++W +
Sbjct: 116 -KLRNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTA 174

Query: 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY 214
           +I+G  +NGR  EAL  F +M   G + D V+ + VL A + +  +  GR       +  
Sbjct: 175 LINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESG 234

Query: 215 RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA---CTTFRNA 268
           R+   +   + +VD+  + G  ++A  +      R+  S W  L+     C  ++ A
Sbjct: 235 RVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVS-WGALIAGYVQCNRYKEA 290



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 22/171 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+ +H  V    L  N  + ++LVDMY KCG VDE+  VF+K+  K+    +A++ G
Sbjct: 322 LDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMING 381

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACA--GLA--ALRLGKEVHCQY---- 109
               GD  S + +F +M    +   G+    VL ACA  GL    L L + + C Y    
Sbjct: 382 LAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEP 441

Query: 110 -IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI-TWNSMISG 158
            +   GC        +VDL  + G ++ A +    MP+      W ++ SG
Sbjct: 442 NVDHYGC--------MVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSG 484


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 209/363 (57%), Gaps = 34/363 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L Q ++VHA+    G+  N++V + LV  Y     +D+++ +FD M  ++SVS S ++ G
Sbjct: 376 LTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 435

Query: 62  YCQTGDFESVIRIFREM-------------------EEIDLF-------------SFGIV 89
           + + GD+ +    FRE+                   E + LF             +   V
Sbjct: 436 FAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTV 495

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           + ACA L A+   + +   YI+R   + DVI+ +A++D++AKCGCV+ A +IF +M  +N
Sbjct: 496 VFACAKLGAMHKARTID-DYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKN 554

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           +I+W++MI+ +  +G+G +AL +F  M   G  P+ ++ + +L ACSH GL++ G + F+
Sbjct: 555 VISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFS 614

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
            M ++Y ++  ++HY C+VDLLGRAG L+EA  LIE+     D  LW   LGAC T ++ 
Sbjct: 615 LMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDV 674

Query: 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            +AE+ A  ++EL+P     Y+LL N+Y   GRW D  K R LM    +KK+PG +WIE 
Sbjct: 675 VLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEV 734

Query: 329 NSK 331
           ++K
Sbjct: 735 DNK 737



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 136/244 (55%), Gaps = 8/244 (3%)

Query: 23  VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-- 80
           ++ +LVDMY KC  ++++  +FDKM +++ V+ + ++ GY + G     + +F +M E  
Sbjct: 195 LQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEG 254

Query: 81  --IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFA 137
              D  +   V+ ACA L A+   + +   YI+R   + DVI+ +A++D+YAKCGCV+ A
Sbjct: 255 VVPDKVAMVTVVFACAKLGAMHKARIID-DYIQRKKFQLDVILGTAMIDMYAKCGCVESA 313

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
            +IF +M  +N+I+W++MI+ +  +G+G +AL +F  M   G  PD ++   +L AC + 
Sbjct: 314 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINC 373

Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
             + + R+  A  +    ++  I   N +V        L++A  L +   C  DS  W V
Sbjct: 374 RNLTQVRQVHAQASVHGMLQNLIVA-NKLVHFYSYYRALDDAYGLFDGM-CVRDSVSWSV 431

Query: 258 LLGA 261
           ++G 
Sbjct: 432 MVGG 435



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 136/268 (50%), Gaps = 35/268 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L Q ++VHA+    G+  N+VV + L+  Y     +D+++ +FD M  ++SVS S ++ G
Sbjct: 94  LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 153

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           + + GD+ +    FRE+       D ++   V+RAC  L  L++                
Sbjct: 154 FAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM---------------- 197

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
                ALVD+Y KC  ++ A  +F +M  R+L+TW  MI G+A+ G+  E+L +F+ M E
Sbjct: 198 -----ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 252

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE----HYNCMVDLLGRA 233
            G  PD V+ + V+ AC+ +G +     H A +  +Y  + K +        M+D+  + 
Sbjct: 253 EGVVPDKVAMVTVVFACAKLGAM-----HKARIIDDYIQRKKFQLDVILGTAMIDMYAKC 307

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGA 261
           G +E A  + +  + ++  S W  ++ A
Sbjct: 308 GCVESAREIFDRMEEKNVIS-WSAMIAA 334



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 128/274 (46%), Gaps = 34/274 (12%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +V++ ++++DMY KCG V+ +  +FD+M +KN +S SA++  Y   G     + +FR M 
Sbjct: 293 DVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMML 352

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
                 D  +   +L AC     L   ++VH Q       +++I+ + LV  Y+    +D
Sbjct: 353 SSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALD 412

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQN----------------------------GRGEE 167
            A+ +F  M VR+ ++W+ M+ GFA+                             G   E
Sbjct: 413 DAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANE 472

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
           +L +FD M E G  PD V+ + V+ AC+ +G + + R       +  + +  +     M+
Sbjct: 473 SLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKART-IDDYIQRKKFQLDVILGTAMI 531

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           D+  + G +E A  + +  + ++  S W  ++ A
Sbjct: 532 DMHAKCGCVESAREIFDRMEEKNVIS-WSAMIAA 564


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 123/314 (39%), Positives = 194/314 (61%), Gaps = 6/314 (1%)

Query: 20   NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
            N+V  ++++  Y K   +  + ++FD++ KK+ +S S+++ GY Q   F   + IFR+M+
Sbjct: 718  NIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQ 777

Query: 80   ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
                + D      V+ +CA L AL LGK VH +Y+RR+  K D I+E++L+D+Y KCG  
Sbjct: 778  RAKVKPDAIVIASVVSSCAHLGALDLGKWVH-EYVRRNNIKADTIMENSLIDMYMKCGSA 836

Query: 135  DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
              A Q+F +M  ++ ++WNS+I G A NG  +E+L +F  M   G +P+ V+F+GVL AC
Sbjct: 837  KEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIAC 896

Query: 195  SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
            ++  L++ G  HF SM + Y ++P+++HY C+VDLLGRAG LE+A   I       D  +
Sbjct: 897  ANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVV 956

Query: 255  WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
            W +LLG+C T  +  +AE V KK+ EL+P    +Y LL N Y +  RW++A  +R  M  
Sbjct: 957  WRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMAD 1016

Query: 315  SGVKKMPGKSWIEA 328
            + V+K PG S +EA
Sbjct: 1017 TDVRKSPGCSAVEA 1030



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 186/342 (54%), Gaps = 36/342 (10%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++H  V+  G      V ++LV++Y  CG + +S   F++M  KN+VS + ++ G+   G
Sbjct: 110 QLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWG 169

Query: 67  DFESVIRIF----------------------REMEEIDLF----SFGI---------VLR 91
           + E    +F                      R +E + LF    + GI         V+ 
Sbjct: 170 EVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVP 229

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM-PVRNLI 150
           A + +  + +G+ +H    +     DV + ++L+DLYAK G +  + ++F +M   RNL+
Sbjct: 230 ALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLV 289

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           +W S+ISGFA +G   +A+ +F DM   G +P+ ++F+ VL ACSH GL+++G   F SM
Sbjct: 290 SWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSM 349

Query: 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHV 270
             EY I P ++H+ C++D+LGRAG L EAE +I +     ++++W  LLG C+ +    +
Sbjct: 350 IYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEM 409

Query: 271 AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312
            ER  KKI+ L+ +    +V+L N+   + R++DA  +R L+
Sbjct: 410 GERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLV 451



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 36/294 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+++H  +  LGL  ++ V +SL+ +Y  CG +  +  VFD+M+ K+ VS ++L+ G
Sbjct: 568 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICG 627

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGK------EVHC---- 107
           Y Q   F+ ++ +F+ M+    + D  +   V+ AC  L    +        E +C    
Sbjct: 628 YSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVD 687

Query: 108 --------QYIRRSG-------------CKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
                    Y  R G              ++++  +A++  YAK   +  A +IF Q+P 
Sbjct: 688 VYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPK 747

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           ++LI+W+SMISG++Q     +AL IF  M     KPD +    V+S+C+H+G +D G K 
Sbjct: 748 KDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG-KW 806

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
                +   IK      N ++D+  + G  +EA  + +    +   S   +++G
Sbjct: 807 VHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIG 860



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 164/325 (50%), Gaps = 12/325 (3%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYG--KCGLVDESHRVFDKMLKKNSVSSSAL 58
           R++  K +HA  I  GL       S ++  Y   +  LV  +H+VFD++    +   + L
Sbjct: 465 RMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLV-FAHKVFDQIEAPTTFLWNIL 523

Query: 59  LQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           ++G  Q+      I  +++ +      D  +F  +L+ACA + AL  G+++H    +   
Sbjct: 524 IRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGL 583

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D+ + ++L+ LYA CG + +A  +F +M V+++++WNS+I G++Q  R ++ L +F  
Sbjct: 584 LSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKL 643

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G K D V+ I V+SAC+ +G       +     ++Y I+  +   N +VD  GR G
Sbjct: 644 MQNEGVKADKVTMIKVVSACTRLGDYSMA-DYMVRYIEDYCIEVDVYLGNTLVDYFGRRG 702

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L+ AE +  N   R+  ++   ++ A    ++   A ++  +I   K D  +S+  + +
Sbjct: 703 QLQSAEKVFFNMKVRNIVTM-NAMIAAYAKGQDIVSARKIFDQIP--KKDL-ISWSSMIS 758

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKK 319
            Y     ++DA +I   M+ + VK 
Sbjct: 759 GYSQANHFSDALEIFRQMQRAKVKP 783



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 109/254 (42%), Gaps = 39/254 (15%)

Query: 40  SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGL 96
           +H+VFD+          ALL+ Y      +  +++FR        D ++F   L+ACAGL
Sbjct: 47  AHQVFDR----RPTPWHALLKAYSHGPHPQDALQLFRHARWHAADDTYAFTFALKACAGL 102

Query: 97  AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI 156
              R   ++H   +R+       + +ALV++Y  CGC+  +   F +MPV+N ++WN +I
Sbjct: 103 GWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVI 162

Query: 157 SGFAQNG-------------------------------RGEEALRIFDDMTEGGTKPDHV 185
           +GFA  G                               R  EA+ +F  M   G  P  +
Sbjct: 163 TGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEI 222

Query: 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
           + + V+ A S++G I  G        KE  +   +   N ++DL  + G ++ +  + + 
Sbjct: 223 TVLAVVPALSNVGKILIGEALHGYCEKEGLVW-DVRVGNSLIDLYAKIGSIQNSLRVFDE 281

Query: 246 ADCRHDSSLWEVLL 259
              R +   W  ++
Sbjct: 282 MLDRRNLVSWTSII 295



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQGYC 63
           G+ +H      GL  +V V +SL+D+Y K G +  S RVFD+ML ++N VS ++++ G+ 
Sbjct: 240 GEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFA 299

Query: 64  QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-KDV 118
             G     + +F +M    +     +F  VL AC+    +  G       I       DV
Sbjct: 300 MHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDV 359

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI---SGFAQNGRGEEALR 170
                ++D+  + G +  A QI    PV  N   W +++   S + +   GE  ++
Sbjct: 360 KHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMK 415



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH  V    +  + ++E+SL+DMY KCG   E+ +VF +M +K+++S ++++ G
Sbjct: 801 LDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIG 860

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  +  + +F+ M        G+    VL ACA    +  G + H + ++R    +
Sbjct: 861 LANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLD-HFESMKRLYSLE 919

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNG 163
             ++    +VDL  + G ++ A +   +MP+  + + W  ++     +G
Sbjct: 920 PQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHG 968


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 203/381 (53%), Gaps = 50/381 (13%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL- 59
           L+ G+E+H   I +  L  +++V +SLVD Y KC  V+ + R F  + + + VS +A+L 
Sbjct: 228 LRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA 287

Query: 60  -QGYCQTGDFESVIRIFREME--------------------------------------- 79
             G+ Q GD ++ +  F+ M                                        
Sbjct: 288 VTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLRE 347

Query: 80  ------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV-IIESALVDLYAKCG 132
                 E++  +    L AC+ LAALR GKE+H Q+I R G      I ++L+D+Y +CG
Sbjct: 348 MNLSNVEVNTVTMVSALPACSKLAALRQGKEIH-QFIIRCGLDTCNFILNSLIDMYGRCG 406

Query: 133 CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
            +  + +IF  MP R+L++WN MIS +  +G G +A+ +F      G KP+H++F  +LS
Sbjct: 407 SIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLS 466

Query: 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           ACSH GLI+ G K+F  M  EY + P +E Y CMVDLL RAG   E    IE      ++
Sbjct: 467 ACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNA 526

Query: 253 SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312
           ++W  LLGAC    N  +AE  A+ + EL+P    +YVL+ N+Y A GRW DA KIR LM
Sbjct: 527 AVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLM 586

Query: 313 KYSGVKKMPGKSWIEANSKLN 333
           K  GV K PG SWIE   KL+
Sbjct: 587 KERGVTKPPGCSWIEVKRKLH 607



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 137/243 (56%), Gaps = 6/243 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G +VHA+++  G+     + S L+++Y + G V+++ R+FDKM ++N  S +A+++ 
Sbjct: 26  LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 85

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           YC  GD+E  I++F     E    D F F  V +AC+ L   R+GK+V+  Y+   G + 
Sbjct: 86  YCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY-DYMLSIGFEG 144

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +  ++ +++D++ KCG +D A + F ++  +++  WN M+SG+   G  ++AL +F  M 
Sbjct: 145 NSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMV 204

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+ ++    +SAC+++ L+  GR+      K   +   +   N +VD   +   +
Sbjct: 205 LEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSV 264

Query: 237 EEA 239
           E A
Sbjct: 265 EVA 267



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 170/363 (46%), Gaps = 61/363 (16%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+V+  ++++G  GN  V+ S++DM+ KCG +D + R F+++  K+    + ++ GY  
Sbjct: 130 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 189

Query: 65  TGDFESVIRIFREM--EEIDLFSFGIV--LRACAGLAALRLGKEVHCQYIRRSGC-KDVI 119
            G+F+  + +FR+M  E +   S  I   + AC  L+ LR G+E+H   I+      D++
Sbjct: 190 KGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 249

Query: 120 IESALVDLYAKCGCVDFAHQ---------------------------------------- 139
           + ++LVD YAKC  V+ A +                                        
Sbjct: 250 VGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHI 309

Query: 140 ---IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
              +F ++  R+++ WNS+IS  AQ+GR   AL +  +M     + + V+ +  L ACS 
Sbjct: 310 ACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSK 369

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           +  + +G++       ++ I+  ++      N ++D+ GR G ++++  + +    R D 
Sbjct: 370 LAALRQGKE-----IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR-DL 423

Query: 253 SLWEVLLGACTTFRNAHVAERVAKKI--MELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310
             W V++           A  + ++   M LKP+ H+++  L +     G   + +K   
Sbjct: 424 VSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPN-HITFTNLLSACSHSGLIEEGWKYFK 482

Query: 311 LMK 313
           +MK
Sbjct: 483 MMK 485



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  +L+ C  L  LRLG +VH Q +         + S L+++Y + GCV+ A ++F +M 
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RN+ +W +++  +   G  EE +++F  M   G +PDH  F  V  ACS +     G+ 
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 206 HFASMTKEYRIKPKIEHYNC----MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            +     +Y +    E  +C    ++D+  + G ++ A    E  + + D  +W +++  
Sbjct: 133 VY-----DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSG 186

Query: 262 CTTFRNAHVAERVAKKIM--ELKPD 284
            T+      A  V +K++   +KP+
Sbjct: 187 YTSKGEFKKALNVFRKMVLEGVKPN 211


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/333 (39%), Positives = 199/333 (59%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VH   +  G   +V V SSLVDMY KCG +  + ++FD+M ++N V+ S ++ GY Q
Sbjct: 135 GRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQ 194

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G+ E  + +F+E       ++ +SF  V+  CA    L LG+++H   I+ S      +
Sbjct: 195 MGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFV 254

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            S+LV LY+KCG  + A+Q+F ++PV+NL  WN+M+  +AQ+   ++ + +F  M   G 
Sbjct: 255 GSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGM 314

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ ++F+ VL+ACSH GL+D GR +F  M KE RI+P  +HY  +VD+LGRAG L+EA 
Sbjct: 315 KPNFITFLNVLNACSHAGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGRAGRLQEAL 373

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            +I N       S+W  LL +CT  +N  +A   A K+ EL P     ++ L N Y A G
Sbjct: 374 EVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADG 433

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           R+ DA K R L++  G KK  G SW+E  +K++
Sbjct: 434 RFEDAAKARKLLRDRGEKKETGLSWVEERNKVH 466



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 116/206 (56%), Gaps = 4/206 (1%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G ++H  V+  GL    +V ++L++ Y K  L  +S R F+   +K+S + S+++  + 
Sbjct: 33  KGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFA 92

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q       +   ++M   +L     VL    ++CA L+   +G+ VHC  ++     DV 
Sbjct: 93  QNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVF 152

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + S+LVD+YAKCG + +A ++F +MP RN++TW+ M+ G+AQ G  EEAL +F +     
Sbjct: 153 VGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFEN 212

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK 205
              +  SF  V+S C++  L++ GR+
Sbjct: 213 LAVNDYSFSSVISVCANSTLLELGRQ 238



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 19/205 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+++H   I      +  V SSLV +Y KCG+ + +++VF+++  KN    +A+L+ 
Sbjct: 233 LELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKA 292

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    + VI +F+ M+    + +  +F  VL AC+    +  G+    Q       K+
Sbjct: 293 YAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQM------KE 346

Query: 118 VIIE------SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISGFAQNGRGEEALR 170
             IE      ++LVD+  + G +  A ++   MP+    + W ++++    +   E A  
Sbjct: 347 SRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAF 406

Query: 171 IFDDMTEGGTKPD--HVSFIGVLSA 193
             D + E G      H+S     +A
Sbjct: 407 AADKVFELGPVSSGMHISLSNAYAA 431


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 198/337 (58%), Gaps = 5/337 (1%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R   GK VH   +  G   +V V SSLVDMY KCG +  + ++FD+M  +N V+ S ++ 
Sbjct: 131 RCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMY 190

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY Q G+ E  + +F+E       ++ +SF  V+  CA    L LG+++    I+ S   
Sbjct: 191 GYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDS 250

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
              + S+LV LY+KCG ++ A+Q+F ++P+RNL  WN+M+   AQ+   ++ + +F  M 
Sbjct: 251 SSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMK 310

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G KP+ ++F+ VL+ACSH GL+D G+ +F  + KE RI+P  +HY  +VD+LGRAG L
Sbjct: 311 LSGMKPNFITFLNVLNACSHAGLVDEGKYYF-DLMKESRIEPTDKHYASLVDMLGRAGKL 369

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
           EEA  ++ N       S+W  LL +CT  +N  +A   A K+ EL P     ++ L N Y
Sbjct: 370 EEALEIVTNMPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAY 429

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
            A GR+ DA K R L++  G KK  G SW+E  +K++
Sbjct: 430 AADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVH 466



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 147/291 (50%), Gaps = 16/291 (5%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G ++H  ++  GL    +V ++L++ Y K  L  +S R F+   +K++ + S+++  + 
Sbjct: 33  KGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFA 92

Query: 64  QTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q       +   R+M    L     VL    ++C  L+   +GK VHC  ++     DV 
Sbjct: 93  QNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVF 152

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + S+LVD+YAKCG + +A ++F +MP+RN++TW+ M+ G+AQ G  EEAL +F +     
Sbjct: 153 VGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFEN 212

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRAGL 235
              +  SF  V+S C++  L++ GR+      +   IK   +      + +V L  + G 
Sbjct: 213 LAVNDYSFSTVISVCANSTLLELGRQ-----IQGLCIKSSFDSSSFVGSSLVSLYSKCGD 267

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK--KIMELKPD 284
           LE A  + +    R +  +W  +L AC    +      + K  K+  +KP+
Sbjct: 268 LEGAYQVFDEVPMR-NLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPN 317


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 198/335 (59%), Gaps = 3/335 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK GK VH   I  G+   + V ++L++MY KCG ++E+  +FD ++ K+ +S + L+ G
Sbjct: 414 LKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGG 473

Query: 62  YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Y +         +F EM      +  +   +L A A L++L  G+E+H   +RR   +D 
Sbjct: 474 YSRNNLANEAFSLFTEMLLQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDD 533

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +AL+D+Y KCG +  A ++F ++  +NLI+W  M++G+  +GRG +A+ +F+ M   
Sbjct: 534 FVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVS 593

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  PD  SF  +L ACSH GL D G + F +M KE++I+P+++HY CMVDLL   G L+E
Sbjct: 594 GIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKE 653

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   I++     DSS+W  LL  C   RN  +AE VA+++ EL+P+    YVLL N+Y  
Sbjct: 654 AYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAE 713

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             RW    K++  +   G+++  G SWIEA  K++
Sbjct: 714 AERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVH 748



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 112/211 (53%), Gaps = 8/211 (3%)

Query: 2   LKQGKEVH--AKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SA 57
           L+ GK  H   +  +LG  G + V+   LV MY KCG ++ + RVFD+M + + V   +A
Sbjct: 107 LEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTA 166

Query: 58  LLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           L+ GY + GD    + +FR+M       D ++   VL+  AGL ++  G+ VH    +  
Sbjct: 167 LMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLG 226

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
                 + +AL+  YAK      A  +F  MP R++I+WNSMISG   NG  ++A+ +F 
Sbjct: 227 FGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFV 286

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
            M   G + D  + + VL AC+ + L+  GR
Sbjct: 287 RMWLEGEELDSATLLSVLPACAELHLLFLGR 317



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 140/292 (47%), Gaps = 15/292 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+ VH  +  LG      V ++L+  Y K     ++  VFD M  ++ +S ++++ G
Sbjct: 212 IEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISG 271

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G ++  I +F  M    EE+D  +   VL ACA L  L LG+ VH   ++      
Sbjct: 272 CTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQ 331

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + + L+D+Y+ C      ++IF  M  +N+++W +MI+ + + G  ++   +F +M  
Sbjct: 332 TSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGL 391

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRA 233
            GT+PD  +    L A +   L+  G+         Y I+  +E      N ++++  + 
Sbjct: 392 EGTRPDIFAITSALHAFAGNELLKHGKS-----VHGYAIRNGMEKVLAVTNALMEMYVKC 446

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA-ERVAKKIMELKPD 284
           G +EEA+ LI +     D   W  L+G  +    A+ A     + +++L+P+
Sbjct: 447 GNMEEAK-LIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRPN 497



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 7/150 (4%)

Query: 59  LQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVH----CQYIRRSG 114
           +Q  C++GD E  + +    + +D  S+G VL+ C+ + +L  GK  H       + R G
Sbjct: 68  IQRLCRSGDLEEALGLLGS-DGVDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDG 126

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIFD 173
             +V+ +  LV +Y KCG ++ A ++F +MP V ++  W +++SG+A+ G   E + +F 
Sbjct: 127 MDNVLGQK-LVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFR 185

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
            M   G +PD  +   VL   + +G I+ G
Sbjct: 186 KMHCCGVRPDAYTISCVLKCIAGLGSIEDG 215


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  244 bits (623), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 131/343 (38%), Positives = 193/343 (56%), Gaps = 17/343 (4%)

Query: 2   LKQGKEVHAKVITLGL--------CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS- 52
           L  GKE H   I   L          ++ V + L+DMY KC   + + ++FD +  K+  
Sbjct: 516 LLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRD 575

Query: 53  -VSSSALLQGYCQTGDFESVIRIFREMEEIDL------FSFGIVLRACAGLAALRLGKEV 105
            V+ + ++ GY Q GD  + +++F  M ++D       F+    L ACA LAALR G++V
Sbjct: 576 VVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQV 635

Query: 106 HCQYIRR-SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
           H   +R   G   + + + L+D+Y+K G VD A  +F  MP RN ++W S+++G+  +GR
Sbjct: 636 HAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGR 695

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
           GE+ALR+FD+M +    PD ++F+ VL ACSH G++D G   F  M+K++ + P  EHY 
Sbjct: 696 GEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYA 755

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
           CMVDL GRAG L EA  LI          +W  LL AC    N  + E  A +++EL+  
Sbjct: 756 CMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESG 815

Query: 285 CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
              SY LL N+Y    RW D  +IR  MK +G+KK PG SWI+
Sbjct: 816 NDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQ 858



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 149/308 (48%), Gaps = 51/308 (16%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G++VH   I  GL  +V V +++VDMY KCG ++E+++VF +M  K+ VS +A++ GY 
Sbjct: 382 RGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYS 441

Query: 64  QTGDFESVIRIFREMEE--------------------------IDLF------------- 84
           Q G  E  + +F  M E                          +D+F             
Sbjct: 442 QAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVV 501

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIR--------RSGCKDVIIESALVDLYAKCGCVDF 136
           +   +L AC  + AL  GKE HC  I+          G  D+ + + L+D+YAKC   + 
Sbjct: 502 TLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEV 561

Query: 137 AHQIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM--TEGGTKPDHVSFIGVLS 192
           A ++F  +    R+++TW  MI G+AQ+G    AL++F  M   +   KP+  +    L 
Sbjct: 562 ARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALV 621

Query: 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           AC+ +  +  GR+  A + + +     +   NC++D+  ++G ++ A+ + +N   R+  
Sbjct: 622 ACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAV 681

Query: 253 SLWEVLLG 260
           S   ++ G
Sbjct: 682 SWTSLMTG 689



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 117/198 (59%), Gaps = 8/198 (4%)

Query: 9   HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQT 65
           HA V   G   NV V +++V MYGKCG +  +H +FD +  +   + VS ++++  Y   
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWA 341

Query: 66  GDFESVIRIF-----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            D  + + +F     R +   D+ S   +L ACA LAA   G++VH   IR     DV +
Sbjct: 342 SDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFV 401

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +A+VD+YAKCG ++ A+++F +M  +++++WN+M++G++Q GR E AL +F+ MTE   
Sbjct: 402 GNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENI 461

Query: 181 KPDHVSFIGVLSACSHMG 198
           + D V++  V++  +  G
Sbjct: 462 ELDVVTWTAVITGYAQRG 479



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 111/227 (48%), Gaps = 12/227 (5%)

Query: 66  GDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G    V  ++R+M+ +    D ++F  V +ACA L++L LG  +H    R     +V + 
Sbjct: 238 GSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVC 297

Query: 122 SALVDLYAKCGCVDFAHQIFLQM---PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           +A+V +Y KCG +  AH +F  +    +++L++WNS++S +        AL +F  MT  
Sbjct: 298 NAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTR 357

Query: 179 G-TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               PD +S + +L AC+ +    RGR+     +    +   +   N +VD+  + G +E
Sbjct: 358 HLMSPDVISLVNILPACASLAASLRGRQ-VHGFSIRSGLVDDVFVGNAVVDMYAKCGKME 416

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAH---VAERVAKKIMEL 281
           EA  + +    +   S   ++ G     R  H   + ER+ ++ +EL
Sbjct: 417 EANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIEL 463



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 8/172 (4%)

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVR--NLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + L+  Y       +A  +  ++P    ++  WN +I      G   +   ++  M  
Sbjct: 193 LATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKS 252

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PDH +F  V  AC+++  +  G    A++++       +   N +V + G+ G L 
Sbjct: 253 LGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRS-GFASNVFVCNAVVSMYGKCGALR 311

Query: 238 EAETLIENADCR--HDSSLWEVLLGACTTFRNAHVAERVAKKIME---LKPD 284
            A  + ++   R   D   W  ++ A     +A+ A  +  K+     + PD
Sbjct: 312 HAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPD 363


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 220/370 (59%), Gaps = 36/370 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCG-------------------------- 35
           L++G+EVH++ + LGL  N +V   ++++YGKCG                          
Sbjct: 163 LREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSY 222

Query: 36  ----LVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFG 87
               LV+E+  VF ++ +K++V  +A++ G+ +  +    +  FR M+  ++    F+  
Sbjct: 223 SDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIV 282

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            VL AC+ L AL +G+ VH  Y+R+   + ++ + +AL+++Y++CG +D A  +F +M  
Sbjct: 283 CVLSACSQLGALEIGRWVH-SYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKD 341

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R++IT+N+MISG + NG+  +A+ +F  M     +P +V+F+GVL+ACSH GL+D G K 
Sbjct: 342 RDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKI 401

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SMT++Y ++P+IEHY CMVDLLGR G LEEA  LI       D  +   LL AC   +
Sbjct: 402 FHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHK 461

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  + E+VAK + +       +YVLL +VY + G+W +A ++R  MK +G++K PG S I
Sbjct: 462 NLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 521

Query: 327 EANSKLNHDL 336
           E N++++  L
Sbjct: 522 EVNNEIHEFL 531



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 128/277 (46%), Gaps = 35/277 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + Q   +HA++I  G   +  +   L+    KC  +D + R+F      N    +AL+ G
Sbjct: 62  INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG 121

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +  +G++   I+++  M       D +    +L+AC    ALR G+EVH + ++     +
Sbjct: 122 FVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSN 181

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPV------------------------------R 147
            ++   +++LY KCG +  A ++F +MP                               +
Sbjct: 182 RLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRK 241

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           + + W +MI GF +N     AL  F  M     +P+  + + VLSACS +G ++ GR   
Sbjct: 242 DTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVH 301

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           + M K + I+  +   N ++++  R G ++EA+T+ +
Sbjct: 302 SYMRK-FEIELNLFVGNALINMYSRCGSIDEAQTVFD 337


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 123/329 (37%), Positives = 195/329 (59%), Gaps = 1/329 (0%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H   +   L    VV ++LV MY + G ++E+   FD++ +KN VS S  L G  +
Sbjct: 379 GRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGR 438

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
           +  ++   +I R    I  F+FG ++ A A +  L  G+ +H   ++     D  I ++L
Sbjct: 439 SNTYQDY-QIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSL 497

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           V +Y++CG +  A Q+F +M   N+I+W SMISG A++G    AL +F DM   G KP+ 
Sbjct: 498 VSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPND 557

Query: 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           V++I VLSACSH GL+  G++HF  M K + + P++EHY CMVDLLGR+GL+E+A   I 
Sbjct: 558 VTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFIN 617

Query: 245 NADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWND 304
              C+ D+ +W+ LLGAC T  N  + E  A  +++L+P     YVLL N+Y   G W+ 
Sbjct: 618 EMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQ 677

Query: 305 AFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             +IR+LM+   + K  G SW+  ++ ++
Sbjct: 678 VARIRSLMRDKNLMKEKGLSWMHVDNTIH 706



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 5   GKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G  V   V  LG  G +V V  +L+DM+ K G +    RVFD + ++  V  + L+  Y 
Sbjct: 172 GGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYA 231

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q+G  +  + +F +M E     D ++   +L AC  L + RLG+++H   +R     D  
Sbjct: 232 QSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSC 291

Query: 120 IESALVDLYAKC---GCVDFAHQIFLQMPVRNLITWNSMISGFAQNG-RGEEALRIFDDM 175
           +   LVD+YAK      +  A ++F +MP  N++ W +++SG+ Q G +  + + +F  M
Sbjct: 292 VSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKM 351

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G +P+H+++  +L AC+++G  D GR+      K       +   N +V +   +G 
Sbjct: 352 LNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVG-NALVSMYAESGS 410

Query: 236 LEEA 239
           +EEA
Sbjct: 411 IEEA 414



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 8/194 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALLQGYCQTGDFESVIRIFRE 77
           + VV +SL+ +Y KC  V  +  VFD M    ++ VS +A+     + G     +R+F E
Sbjct: 83  DAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGE 142

Query: 78  MEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC--KDVIIESALVDLYAKC 131
             E  L    F+     +AC       L        + + G    DV +  AL+D++AK 
Sbjct: 143 TLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKN 202

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           G +    ++F  +  R ++ W  +I+ +AQ+G  +EA+ +F DM E G +PD  +   +L
Sbjct: 203 GDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSML 262

Query: 192 SACSHMGLIDRGRK 205
           SAC+ +G    G++
Sbjct: 263 SACTELGSFRLGQQ 276



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 122/247 (49%), Gaps = 16/247 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESH---RVFDKMLKKNSVSSSAL 58
            + G+++H+  + LGL  +  V   LVDMY K       H    VF++M K N ++ +AL
Sbjct: 271 FRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTAL 330

Query: 59  LQGYCQTGDFESVI-----RIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           L GY Q G  ++ +     ++  E    +  ++  +L+ACA L     G+++H   ++ +
Sbjct: 331 LSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSN 390

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
                ++ +ALV +YA+ G ++ A   F Q+  +N+++++  + G   +GR         
Sbjct: 391 LADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDG---DGRSNTYQDYQI 447

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGR 232
           +  E G      +F  ++SA + +G++ +G++ H  S+   +     I   N +V +  R
Sbjct: 448 ERMELGIST--FTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIG--NSLVSMYSR 503

Query: 233 AGLLEEA 239
            G L +A
Sbjct: 504 CGYLVDA 510



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 93/191 (48%), Gaps = 18/191 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L +G+ +HA  +  G   +  + +SLV MY +CG + ++ +VFD+M   N +S ++++ G
Sbjct: 472 LTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISG 531

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G     + +F +M    +     ++  VL AC+    ++ GKE H + +++     
Sbjct: 532 LAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKE-HFRMMQKHHGLI 590

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDD 174
             +E  + +VDL  + G V+ A     +MP + + + W +++           A +  ++
Sbjct: 591 PRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLG----------ACKTHNN 640

Query: 175 MTEGGTKPDHV 185
           M  G    +HV
Sbjct: 641 MDIGEIAANHV 651


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 124/332 (37%), Positives = 194/332 (58%), Gaps = 17/332 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+VH  +    +  N+ V ++L+DMY KCG +D ++ VF  M+ K+ +S + ++  
Sbjct: 368 LDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI-- 425

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
               G+ +            D  +   +L ACA L+AL  GKE+H   +R     D  + 
Sbjct: 426 ----GELKP-----------DSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVA 470

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALVDLY KCG +  A  +F  +P ++L++W  MISG+  +G G EA+  F++M + G +
Sbjct: 471 NALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIE 530

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD VSFI +L ACSH GL+++G + F  M  ++ I+PK+EHY CMVDLL R G L +A  
Sbjct: 531 PDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYE 590

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
            IE      D+++W  LL  C  + +  +AE+VA+++ EL+P+    YVLL N+Y    +
Sbjct: 591 FIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEK 650

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           W +  ++R  +   G++K PG SWIE   K+N
Sbjct: 651 WEEVKRMREKIGKKGLRKNPGCSWIEIKGKVN 682



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 140/264 (53%), Gaps = 31/264 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH+  I       +   ++L+DMY KCG +D + RVF+KM ++N VS ++++ G
Sbjct: 267 LSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + G  +  IR+ ++ME+    +D+ +   +L ACA   +L  GK+VH  YI+ +  + 
Sbjct: 327 YTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVH-DYIKANNMES 385

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ + +AL+D+Y KCG +D A+ +F  M V+++I+WN+MI                    
Sbjct: 386 NLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI-------------------- 425

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            G  KPD  +   +L AC+ +  ++RG++ H   +   Y     +   N +VDL  + G+
Sbjct: 426 -GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVA--NALVDLYVKCGV 482

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           L  A  L +    + D   W V++
Sbjct: 483 LGLARLLFDMIPSK-DLVSWTVMI 505



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 143/314 (45%), Gaps = 57/314 (18%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS--------- 52
           L  GK+VH+ + +  +  + V+   LV +Y  CG + E  RVFD M KKN          
Sbjct: 115 LTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSE 174

Query: 53  ------------------------------------------VSSSALLQGYCQTGDFES 70
                                                     +S ++++ GY   G  E 
Sbjct: 175 YAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTER 234

Query: 71  VIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVD 126
            + I+++M     ++DL +   VL  CA    L LGK VH   I+ +  + +   + L+D
Sbjct: 235 GLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLD 294

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
           +Y+KCG +D A ++F +M  RN+++W SMI+G+ ++GR + A+R+   M + G K D V+
Sbjct: 295 MYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVA 354

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
              +L AC+  G +D G K      K   ++  +   N ++D+  + G ++ A ++    
Sbjct: 355 TTSILHACARSGSLDNG-KDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTM 413

Query: 247 DCRHDSSLWEVLLG 260
             + D   W  ++G
Sbjct: 414 VVK-DIISWNTMIG 426



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 55/255 (21%)

Query: 62  YCQTGDFESVIRI--FREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           +CQ G+ E+ + +    +  E++  ++  VL+ CAG  +L  GK+VH      +   D +
Sbjct: 76  FCQLGNLENAMELVCMCQKSELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEV 135

Query: 120 IESALVDLYAKCGCV-----------------------------DF-------------- 136
           +   LV LYA CG +                             DF              
Sbjct: 136 LGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195

Query: 137 --------AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI 188
                   A ++F ++  R++I+WNSMISG+  NG  E  L I+  M   G   D  + I
Sbjct: 196 IEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATII 255

Query: 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADC 248
            VL  C++ G +  G K   S+  +   + +I   N ++D+  + G L+ A  + E    
Sbjct: 256 SVLVGCANSGTLSLG-KAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 249 RHDSSLWEVLLGACT 263
           R+  S W  ++   T
Sbjct: 315 RNVVS-WTSMIAGYT 328


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 117/295 (39%), Positives = 183/295 (62%), Gaps = 4/295 (1%)

Query: 43   VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAA 98
            +F K+  K+ VS + ++  Y         + IF +ME+     D  S   VL AC  L+A
Sbjct: 1251 MFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSA 1310

Query: 99   LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
            L LG+ +H   +R+    ++++E+AL+D+YAKCGC+++A ++F QM  R++++W SMIS 
Sbjct: 1311 LLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISA 1370

Query: 159  FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP 218
            +  NG+G +A+ +F  M + G  PD ++F+ VLSACSH GL+D GR +F  MT+E +I P
Sbjct: 1371 YGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVP 1430

Query: 219  KIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
            +IEH+ CMVDLLGRAG ++EA   I+      +  +W  LL AC  + N  +    A ++
Sbjct: 1431 RIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQL 1490

Query: 279  MELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             +L P+    YVLL N+Y   GRW D   +R++MK  G+KKMPG S  E +++++
Sbjct: 1491 FQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVH 1545



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 161/329 (48%), Gaps = 20/329 (6%)

Query: 2    LKQGKEVHAKV-ITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
            +K  K++H+K+ I   L  N  +   L+  Y  CG    +  +FD++ KKN V  + +++
Sbjct: 1040 IKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIR 1099

Query: 61   GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
             Y     +   + +F+ M     + D +++  VL+A +G   L +G ++H   +R     
Sbjct: 1100 SYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDL 1159

Query: 117  DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            +V + + L+ +Y KCGC+  A ++  ZMP R++++WNS+++G A+NG+ ++AL +  +M 
Sbjct: 1160 NVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEME 1219

Query: 177  EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK---PKIEHYNCMVDLLGRA 233
              G KPD  +   +L A ++  L +       S  KE  +K     +  +N M+ +    
Sbjct: 1220 LLGLKPDAGTMASLLPAVTNTCLDN------VSFVKEMFMKLANKSLVSWNVMIAVYMNN 1273

Query: 234  GLLEEAETL---IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCHLS 288
             +  EA  +   +E+     D+     +L AC       +  R+ + ++   L+P+  L 
Sbjct: 1274 SMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLE 1333

Query: 289  YVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
              L+D +Y   G    A ++   MK+  V
Sbjct: 1334 NALID-MYAKCGCLEYAREVFDQMKFRDV 1361



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 20/182 (10%)

Query: 5    GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
            G+ +H  V+   L  N+++E++L+DMY KCG ++ +  VFD+M  ++ VS ++++  Y  
Sbjct: 1314 GRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGM 1373

Query: 65   TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI- 119
             G     + +F  M+++    D  +F  VL AC+    L  G+  +   +    CK V  
Sbjct: 1374 NGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGR--YYFKLMTEECKIVPR 1431

Query: 120  IES--ALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDMT 176
            IE    +VDL  + G VD A+    QMP+  N   W +++S          A R++ +M 
Sbjct: 1432 IEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLS----------ACRVYSNMI 1481

Query: 177  EG 178
             G
Sbjct: 1482 IG 1483


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 124/331 (37%), Positives = 200/331 (60%), Gaps = 6/331 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G  VH K++T  +  +  V S++++MYGKCG    +  VFD +  +N V  +A++  
Sbjct: 250 LRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMAS 309

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G FE  + +F +ME+ ++    F++ ++L ACAGL+A R G  +H  +  +SG K 
Sbjct: 310 CFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLH-GHSEKSGFKH 368

Query: 118 -VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
            V++ +AL+++YAK G ++ A ++F  M  R++ITWN+MI GF+ +G G++AL +F DM 
Sbjct: 369 HVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDML 428

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                P++V+F GVLSAC H+GL+  G  +   + K++ ++P +EHY C+V LL + G L
Sbjct: 429 AAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQL 488

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EA   +  A  + D   W  LL AC   +N  +   VA+ ++E+ P+   +Y LL N+Y
Sbjct: 489 NEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIY 548

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
               RW+   K+R LM+   +KK PG SWIE
Sbjct: 549 AKEKRWDGVVKVRKLMRDKKIKKEPGVSWIE 579



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 134/275 (48%), Gaps = 13/275 (4%)

Query: 2   LKQGKEVHAK-VITLGLCGNVVVE-SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           LK GK +H+  ++T     N ++E +SL++ Y K   V  +H +FD+M ++N VS SAL+
Sbjct: 45  LKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALM 104

Query: 60  QGYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
            GY   G    VIR+ ++M        + +   I + +C     +  G++ H   ++   
Sbjct: 105 TGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGF 164

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
                + +ALV +Y+KC  V  A  ++ ++PV +++ +NS++S   +NG   E L +   
Sbjct: 165 SFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRS 224

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRG-RKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           M     K D V+F+   S C+ +  +  G   H   +T +      +   + ++++ G+ 
Sbjct: 225 MVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVS--SAIINMYGKC 282

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
           G    A  + +    R +  LW  ++ +C  F+N 
Sbjct: 283 GKSLMARGVFDGLQSR-NVVLWTAVMASC--FQNG 314



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 158/335 (47%), Gaps = 24/335 (7%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDK-----MLKKNSVSS 55
           R+++G++ H  ++  G   +  V ++LV MY KC +V ++  V+++     ++  NS+ S
Sbjct: 148 RVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILS 207

Query: 56  SALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           S +  GY + G  E +  +  E  + D  +F      CA L  LRLG  VH + +     
Sbjct: 208 SLVENGYLREG-LEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVE 266

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D  + SA++++Y KCG    A  +F  +  RN++ W ++++   QNG  EEAL +F  M
Sbjct: 267 CDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKM 326

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLG 231
            +   K +  ++  +L+AC+ +     G     S+   +  K   +H+    N ++++  
Sbjct: 327 EQENVKSNEFTYAVLLNACAGLSARRNG-----SLLHGHSEKSGFKHHVMVGNALINMYA 381

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVL 291
           ++G +E A+ +  +   R D   W  ++   +       A  V + +  L  + H +YV 
Sbjct: 382 KSGDIEAAKKVFSDMMHR-DIITWNAMICGFSHHGLGKKALLVFQDM--LAAEEHPNYVT 438

Query: 292 LDNVYRAVGRW----NDAFKIRTLMKYSGVKKMPG 322
              V  A G         + +  LMK  GV+  PG
Sbjct: 439 FTGVLSACGHLGLVQEGFYYLHHLMKQFGVQ--PG 471


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  244 bits (622), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 202/342 (59%), Gaps = 10/342 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+H  ++  G   +  +  SLV +Y +CG +  +   FD M +KN V  + ++ G
Sbjct: 518 LSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMING 577

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           + Q       + +F +M       +EI +      L AC+ ++ALRLGKE+HC  ++   
Sbjct: 578 FSQNEFPFDALDMFHQMLSSKIWPDEISIIG---ALGACSQVSALRLGKELHCFAVKSHL 634

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            +   +  +L+D+YAKCGC++ +  IF ++ ++  +TWN +I+G+  +G G +A+ +F  
Sbjct: 635 TEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKS 694

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G +PD V+FI +L+AC+H GL+  G ++   M   + IKPK+EHY C+VD+LGRAG
Sbjct: 695 MQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAG 754

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L EA  L+     + DS +W  LL +C  +R+  + E+VA K++EL PD   +YVL+ N
Sbjct: 755 RLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISN 814

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            Y  +G+W++  K+R  MK  G++K  G SWIE   K++  L
Sbjct: 815 FYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFL 856



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 129/260 (49%), Gaps = 9/260 (3%)

Query: 6   KEVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           KE+H   +  G    + +V ++ V  Y KCG +  +  VF  M  K   S +AL+ G+ Q
Sbjct: 420 KEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQ 479

Query: 65  TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     + ++  M     E DLF+   +L ACA L +L  GKE+H   +R     D  I
Sbjct: 480 NGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFI 539

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
             +LV LY +CG +  A   F  M  +NL+ WN+MI+GF+QN    +AL +F  M     
Sbjct: 540 CISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKI 599

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC-MVDLLGRAGLLEEA 239
            PD +S IG L ACS +  +  G++      K +  +       C ++D+  + G +E++
Sbjct: 600 WPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSF--VTCSLIDMYAKCGCMEQS 657

Query: 240 ETLIENADCRHDSSLWEVLL 259
           + + +    + + + W VL+
Sbjct: 658 QNIFDRVHLKGEVT-WNVLI 676



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 158/319 (49%), Gaps = 12/319 (3%)

Query: 5   GKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+++H  + T     N VV+ + LV MY  C    +S  VF+   +KN    +ALL GY 
Sbjct: 112 GRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYL 171

Query: 64  QTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           +   F   + +F EM  +     D F+   V++AC G+  +RLG+ VH   ++     DV
Sbjct: 172 RNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDV 231

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +AL+ +Y K G V+ A ++F +MP RNL++WNS++    +NG  EE+  +F  +  G
Sbjct: 232 FVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNG 291

Query: 179 --GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G  PD  + + V+  C+  G +  G   F  +  +  +  +++  + ++D+  + G L
Sbjct: 292 DEGLMPDVATMVTVIPLCARQGEVRLGMV-FHGLALKLGLCGELKVNSSLLDMYSKCGYL 350

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EA  L +  +    S  W  ++G  +  R+   A  + +K M+++    ++ V L NV 
Sbjct: 351 CEARVLFDTNEKNVIS--WNSMIGGYSKDRDFRGAFELLRK-MQMEDKVKVNEVTLLNVL 407

Query: 297 RAVGRWNDAFKIRTLMKYS 315
                     K++ +  Y+
Sbjct: 408 PVCEEEIQFLKLKEIHGYA 426



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 147/318 (46%), Gaps = 27/318 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+ VH   +   +  +V V ++L+ MYGK G V+ + +VFDKM ++N VS ++++  
Sbjct: 212 VRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYA 271

Query: 62  YCQTGDFESVIRIFR------EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
             + G FE    +F+      E    D+ +   V+  CA    +RLG   H   ++   C
Sbjct: 272 CLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLC 331

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            ++ + S+L+D+Y+KCG +  A  +F     +N+I+WNSMI G++++     A  +   M
Sbjct: 332 GELKVNSSLLDMYSKCGYLCEARVLF-DTNEKNVISWNSMIGGYSKDRDFRGAFELLRKM 390

Query: 176 T-EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
             E   K + V+ + VL  C       + ++      +   I+      N  V    + G
Sbjct: 391 QMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCG 450

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
            L  AE +    + +  SS W  L+G        HV     +K ++L       Y+L+  
Sbjct: 451 SLHYAEGVFCGMESKMVSS-WNALIG-------GHVQNGFPRKALDL-------YLLM-- 493

Query: 295 VYRAVGRWNDAFKIRTLM 312
             R  G   D F I +L+
Sbjct: 494 --RGSGLEPDLFTIASLL 509


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  244 bits (622), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 130/334 (38%), Positives = 196/334 (58%), Gaps = 5/334 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G  VH  ++   +  + V+++SL+DMY K G ++ + RVF+ +  K+ +S  AL+ G+
Sbjct: 202 KFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGF 261

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G     +    EM+    + DL S    L ACA +  L++GK +H   ++R    D 
Sbjct: 262 AQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYL-DK 320

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           +  +AL+D+YAKCG + FA  +F Q+  R+LI WN+MIS +  +G G EAL +F  M E 
Sbjct: 321 VSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKET 380

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
              PDH +F  +LSACSH GL++ G+  F  +  + +I+P  +HY CMVDLL RAG +EE
Sbjct: 381 NITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEE 440

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A  LIE+   +   ++W  LL  C   +N  + E VAKKI+E  PD    YVL+ N +  
Sbjct: 441 AYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNPDDLGIYVLVSNFFSM 500

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
             +W+DA   R +MK +G++K+PG S +E N  L
Sbjct: 501 AKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNGDL 534



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 145/264 (54%), Gaps = 7/264 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +  + +  G   +V V SS++++Y K G +D++  VFDKM+K++ VS + ++ G
Sbjct: 100 LDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITG 159

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKD 117
           + Q+G     I I+R M++      G+V+    +AC  L   + G  VH   +RR    D
Sbjct: 160 FAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMD 219

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            +++++L+D+YAK G ++ A ++F  +P +++I+W ++ISGFAQNG   + L    +M  
Sbjct: 220 NVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQN 279

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KPD VS I  LSAC+ +G +  G+     + K  R+         ++D+  + G L 
Sbjct: 280 SGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVK--RLYLDKVSGTALIDMYAKCGALT 337

Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
            A  L +  + R D  LW  ++ +
Sbjct: 338 FARALFDQIEPR-DLILWNAMISS 360



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 150/286 (52%), Gaps = 11/286 (3%)

Query: 7   EVHAKVITLGLCGNVVVE-SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++HA ++T GL  N     + L+  YG+   +  +  VF+KM +++  + ++++  Y +T
Sbjct: 3   QIHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRT 62

Query: 66  GDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
              + V+ ++  M  E I  D  +F + L+AC+ L  L +G+ +  Q +      DV + 
Sbjct: 63  NYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVV 122

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           S++++LYAK G +D A  +F +M  R++++W +MI+GFAQ+GR  +A+ I+  M +  T+
Sbjct: 123 SSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTE 182

Query: 182 PDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            D V  +G++ AC+ +G    G   H   + +E  +   ++    ++D+  + G LE A 
Sbjct: 183 GDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQ--TSLIDMYAKNGKLELAS 240

Query: 241 TLIENADCRHDSSLWEVLLG--ACTTFRNAHVAERVAKKIMELKPD 284
            + E    +   S W  L+   A   F N  +A  V  +    KPD
Sbjct: 241 RVFEGIPYKSVIS-WGALISGFAQNGFANKTLASLVEMQNSGFKPD 285


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  244 bits (622), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 202/333 (60%), Gaps = 2/333 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G++VH  + + G   NVVV+++LV MYGKCG   E+ +VFD M  +N +S ++++  
Sbjct: 229 LEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAA 288

Query: 62  YCQTGDFESVIRIFREME-EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           Y Q G+ +  + +F+ M+ E    SF   L ACA L AL  G+E+H + +  +      +
Sbjct: 289 YAQHGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVE-AHLASPQM 347

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           E++L+ +YA+CG +D A ++F +M  R+  + N+MI+ F Q+GR ++ALRI+  M + G 
Sbjct: 348 ETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGI 407

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D ++F+ VL ACSH  L+   R  F S+  ++ + P +EHY CMVD+LGR+G L +AE
Sbjct: 408 PADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAE 467

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            L+E    + D+  W  LL  C    + +  ER A+K+ EL P   L YV L N+Y A  
Sbjct: 468 ELVETMPYQTDAVAWMTLLSGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAK 527

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           R++DA ++R  M+  GV      S+IE +++L+
Sbjct: 528 RFDDARRVRKEMEERGVTTPVAVSYIEIDNELH 560



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 150/282 (53%), Gaps = 11/282 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H +++   +  + V++ SL++MY KC  + E+ +VF+ M  +N  S +A++  
Sbjct: 127 LADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISA 186

Query: 62  YCQTGDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q G+    + +F  M +++      ++F  +L A  GL  L  G++VH     R    
Sbjct: 187 YVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDT 246

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V++++ALV +Y KCG    A ++F  M  RN+I+W SMI+ +AQ+G  +EAL +F  M 
Sbjct: 247 NVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMD 306

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               +P  VSF   L+AC+ +G +D GR+    + + +   P++E    ++ +  R G L
Sbjct: 307 ---VEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSMYARCGSL 361

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           ++A  +      R D+     ++ A T       A R+ +++
Sbjct: 362 DDARRVFNRMKTR-DAFSCNAMIAAFTQHGRKKQALRIYRRM 402



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 155/290 (53%), Gaps = 14/290 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G+ +H  +I  G   ++ +E++L+ MY KCG +D++ RVF+ M  K+  + S+++  
Sbjct: 26  LEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIISA 85

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  E  + ++R M     E ++ +F   L  CA +A L  G+ +H + +     +D
Sbjct: 86  YARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQD 145

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            +++ +L+++Y KC  +  A ++F  M  RN+ ++ +MIS + Q G   EAL +F  M++
Sbjct: 146 DVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSK 205

Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRK---HFASMTKEYRIKPKIEHYNCMVDLLGRA 233
               +P+  +F  +L A   +G +++GRK   H AS   +  +  +    N +V + G+ 
Sbjct: 206 VEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQ----NALVTMYGKC 261

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283
           G   EA  + ++   R+  S W  ++ A     N   A  + K+ M+++P
Sbjct: 262 GSPVEARKVFDSMTARNVIS-WTSMIAAYAQHGNPQEALNLFKR-MDVEP 309



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 71/123 (57%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D F    ++ AC  L AL  G+ +H   I      D+ +E+AL+ +YAKCG +D A ++F
Sbjct: 9   DKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVF 68

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
             M +++L  W+S+IS +A+ GRGE A+ ++  M   G +P+ V+F   L  C+ +  + 
Sbjct: 69  EGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLA 128

Query: 202 RGR 204
            GR
Sbjct: 129 DGR 131


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  244 bits (622), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 195/335 (58%), Gaps = 6/335 (1%)

Query: 5   GKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+ VH  ++  G   G+++  +++VDMY K   ++ + R+FD M  +++VS + L+ GY 
Sbjct: 290 GRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYM 349

Query: 64  QTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
           Q G     I ++  M++ +       +F  VL A + L AL+ G  +H   I+     DV
Sbjct: 350 QNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDV 409

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + + ++DLYAKCG +D A  +F Q P R+   WN++ISG   +G G +AL +F  M + 
Sbjct: 410 YVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQE 469

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  PDHV+F+ +L+ACSH GL+D+GR  F  M   Y IKP  +HY CMVD+ GRAG L++
Sbjct: 470 GISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDD 529

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   I N   + DS++W  LLGAC    N  + +  ++ + EL P     YVL+ N+Y  
Sbjct: 530 AFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAK 589

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           VG+W+   ++R+L++   ++K PG S IE    +N
Sbjct: 590 VGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVN 624



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 10/268 (3%)

Query: 1   RLKQGK----EVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS 55
           R  QG     ++HA  + LGL  G+     +LV  Y + G V +++R FD+M  ++  + 
Sbjct: 79  RAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAW 138

Query: 56  SALLQGYCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           +A+L G C+       + +F  M  E +  D  +   VL  C  L    L   +H   ++
Sbjct: 139 NAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVK 198

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
                ++ + +A++D+Y K G ++   ++F  M  R+L+TWNS+ISG  Q G+   A+ +
Sbjct: 199 HGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEM 258

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           F  M + G  PD ++ + + SA +  G I  GR     M +       I   N +VD+  
Sbjct: 259 FCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYA 318

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLL 259
           +   +E A+ + ++   R D+  W  L+
Sbjct: 319 KLSKIEAAQRMFDSMPVR-DAVSWNTLI 345



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 81/161 (50%), Gaps = 6/161 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG  +HA  I  GL  +V V + ++D+Y KCG +DE+  +F++  ++++   +A++ G
Sbjct: 390 LQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISG 449

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F +M++     D  +F  +L AC+    +  G+          G K 
Sbjct: 450 VGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKP 509

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           +    A +VD++ + G +D A      MP++ +   W +++
Sbjct: 510 IAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALL 550


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  244 bits (622), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 127/336 (37%), Positives = 203/336 (60%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++GK++H  VI  GL  +V V ++L+DMY KCG V+ + +VFDK+ +++ V  +++L  
Sbjct: 118 MEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLAT 177

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  +  + + R M    L     +F I + A A    L  GKE+H    R     +
Sbjct: 178 YSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESN 237

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +++AL+D+YAK G V+ A  +F  +  + +++WN+MI+G+A +G   EAL +F +M +
Sbjct: 238 DKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-K 296

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G   PDH++F+GVL+ACSH GL++ G+ HF SM  ++ I P ++HY CM+DLLG  G LE
Sbjct: 297 GKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLE 356

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  LI       D+ +W  LL +C    N  + E   +K++EL+PD   +YV+L N+Y 
Sbjct: 357 EAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYA 416

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G+W+   ++R LM   G+KK    SWIE  +K++
Sbjct: 417 QAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVH 452



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 173/295 (58%), Gaps = 10/295 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK++HA++  +G+  N ++ + LV++Y  C  +  +H +FD++ K+N    + +++G
Sbjct: 17  IEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRG 76

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G +E  I ++ +M +     D F+F  VL+AC+ L+A+  GK++H   IR     D
Sbjct: 77  YAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESD 136

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +AL+D+YAKCGCV+ A Q+F ++  R+++ WNSM++ ++QNG+ +E+L +   M  
Sbjct: 137 VFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAF 196

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            G KP   +F+  ++A +  GL+ +G++ H  S    +    K++    ++D+  ++G +
Sbjct: 197 NGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVK--TALMDMYAKSGSV 254

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM-ELKPDCHLSYV 290
             A +L E  + +   S W  ++       +A+ A  + K++  ++ PD H+++V
Sbjct: 255 NVARSLFELLEEKRVVS-WNAMITGYAMHGHANEALDLFKEMKGKVLPD-HITFV 307



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 4/190 (2%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  +L++C    A+  GK++H +  +     + ++ + LV+LY  C  +  AH +F ++ 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            RNL  WN MI G+A NG  E A+ ++  M + G  PD  +F  VL ACS +  ++ G+K
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
               + +   ++  +     ++D+  + G +E A  + +  D R D   W  +L   T  
Sbjct: 124 IHKDVIRS-GLESDVFVGAALIDMYAKCGCVESARQVFDKIDER-DVVCWNSMLA--TYS 179

Query: 266 RNAHVAERVA 275
           +N    E +A
Sbjct: 180 QNGQPDESLA 189


>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  244 bits (622), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 138/335 (41%), Positives = 203/335 (60%), Gaps = 16/335 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSALLQGYCQ 64
           +EVH +V+  G+  +VV  ++LVDMY KCG    + R F  M+  KN V+ + ++  + +
Sbjct: 184 REVHRRVLEAGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHAR 243

Query: 65  TGDFESVIRIFREMEE---------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G+ +  + +FREM +          D  +F  VL ACA L AL  G+ VH  YI R+G 
Sbjct: 244 AGELQEALELFREMLQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHA-YIVRTG- 301

Query: 116 KDV---IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
           +D    ++ +AL+D+YAKCG V+ A ++F  M  R++ T+ SMISG A +GRGEEAL +F
Sbjct: 302 RDAAAGVVGNALIDMYAKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALF 361

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
            DM +   +P+ V+F+GVLSAC H G I+ G +HF +M + + + P IEHY C+VD+LGR
Sbjct: 362 GDMRQARVRPNEVTFLGVLSACCHAGNIEDGLRHFDAMAELHGVTPGIEHYGCVVDMLGR 421

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
           AG L+EAE L+     R D+ +W  LL AC    +   AERV +++ E + D    YVL+
Sbjct: 422 AGRLDEAEELVSVMPIRPDAIIWGSLLAACRAHGHVDRAERVMRRMAEDEDDAG-DYVLM 480

Query: 293 DNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            N+Y   GR   A ++R  M+   V K+PG S IE
Sbjct: 481 SNMYAQEGRHGKAVQVRRQMRRGKVDKVPGCSLIE 515



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 6/152 (3%)

Query: 99  LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM-PVRNLITWNSMIS 157
           L L +EVH + +      DV+  +ALVD+YAKCG    A + F  M P +NL+TWN+MIS
Sbjct: 180 LVLAREVHRRVLEAGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMIS 239

Query: 158 GFAQNGRGEEALRIFDDM--TEGGTK---PDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
             A+ G  +EAL +F +M   +G T    PD  +F+ VL AC+ +G +D GR   A + +
Sbjct: 240 AHARAGELQEALELFREMLQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYIVR 299

Query: 213 EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
             R        N ++D+  + G +E+A  + +
Sbjct: 300 TGRDAAAGVVGNALIDMYAKCGAVEQAAEVFD 331


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 120/331 (36%), Positives = 200/331 (60%), Gaps = 4/331 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           ++VH   I  G   +  V +SL+D YGKC L++++ +VF+    ++ V+ ++++  Y Q 
Sbjct: 410 EQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQY 469

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G  E  ++++  M++ D+    F F  +  ACA L+A   GK++H   ++     DV   
Sbjct: 470 GLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAG 529

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++LV++YAKCG +D A  IF ++  R +++W++MI G AQ+G G +AL++F  M + G  
Sbjct: 530 NSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGIL 589

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           P+H++ + VLSAC+H GL+   R+ F  M K + I P  EHY CMVD+LGR G L+EA  
Sbjct: 590 PNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMV 649

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
           L++    +  +++W  LLGA    +N  +    A+ ++ L+P+   +++LL N+Y + G 
Sbjct: 650 LVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGM 709

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           W++  K+R  MK S VKK PG SWIE   K+
Sbjct: 710 WDNVAKVRRSMKNSLVKKEPGMSWIELKDKV 740



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 141/263 (53%), Gaps = 6/263 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G+++H+ ++ + +  +  V   L+DMY KCGL+ ++  VFD M  K+ +  ++++ G
Sbjct: 305 VKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISG 364

Query: 62  YCQTG-DFESV---IRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G D E++     +++E  E +  +   +L++ AG  A    ++VH   I+     D
Sbjct: 365 YSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYD 424

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++L+D Y KC  ++ A ++F   P  +L+ + SMI+ ++Q G GEEAL+++  M +
Sbjct: 425 GYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQD 484

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD   F  + +AC+++   ++G++    + K   +   +   N +V++  + G ++
Sbjct: 485 RDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLK-CGLLSDVFAGNSLVNMYAKCGSID 543

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +A  +      R   S W  ++G
Sbjct: 544 DASCIFNEISWRGIVS-WSAMIG 565



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 127/247 (51%), Gaps = 11/247 (4%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VH  +I LG   +    ++L+DMY K G  + +  VF ++ K + VS +A++ G   
Sbjct: 207 GMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL 266

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
               +  +++  +M        +F+    L+ACA +  ++LG+++H   ++     D  +
Sbjct: 267 HEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFV 326

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
              L+D+Y+KCG +  A  +F  MP +++I WNS+ISG++  G   EA+ +F +M + G 
Sbjct: 327 GVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGL 386

Query: 181 KPDHVSFIGVLSACSHMGLIDRG---RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           + +  +   +L + +  G    G   + H  S+   Y+    +   N ++D  G+  LLE
Sbjct: 387 EFNQTTLSTILKSTA--GSQANGFCEQVHTISIKSGYQYDGYVA--NSLLDSYGKCCLLE 442

Query: 238 EAETLIE 244
           +A  + E
Sbjct: 443 DAAKVFE 449



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 129/287 (44%), Gaps = 48/287 (16%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +  G  +HA++I LG    + + + LV++Y KC     + ++     + + VS SAL+ G
Sbjct: 66  VSSGMAIHARIIRLG---LLGLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSALISG 122

Query: 62  YCQTGDFESVIRIFREM----------------------EEIDL---------------- 83
           Y Q G  E  +  + EM                        ++L                
Sbjct: 123 YVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMIST 182

Query: 84  ------FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
                 FS   VL ACAGL     G +VH   I+     D    +AL+D+YAK GC + A
Sbjct: 183 GISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAA 242

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
             +F ++P  ++++WN++I+G   + + + AL++   M      P   +    L AC+ +
Sbjct: 243 IAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAI 302

Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           GL+  GR+  +++ K   ++P       ++D+  + GLL++A  + +
Sbjct: 303 GLVKLGRQLHSALMK-MDMEPDSFVGVGLIDMYSKCGLLQDARMVFD 348



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 6/160 (3%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +QGK++H  V+  GL  +V   +SLV+MY KCG +D++  +F+++  +  VS SA++ G 
Sbjct: 508 EQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGL 567

Query: 63  CQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q G     +++F +M +  +    I    VL AC     +   +       +  G    
Sbjct: 568 AQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPT 627

Query: 119 IIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
               A +VD+  + G +D A  +  +MP + +   W +++
Sbjct: 628 QEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALL 667


>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
          Length = 569

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 119/323 (36%), Positives = 194/323 (60%), Gaps = 10/323 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKM------LKKNSVSSSALLQGYCQTGDFESVIR 73
           N V  ++L+  Y   GL DE+  V  +M      +  N VS SA++ G+  +GD +  + 
Sbjct: 213 NTVTWNTLITSYAAAGLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALE 272

Query: 74  IFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129
           +FR M++     ++ +   VL AC  L ALRLG+E+H   ++    +  ++E+ L+++YA
Sbjct: 273 LFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYA 332

Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
           KCG V  A ++F  M  R+LI+WNSM++G+  +G  +EAL +F DM     +PD V+F+ 
Sbjct: 333 KCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVA 392

Query: 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
           VLSAC H G +  GR+ F  M + ++I P +EHY CMV LLGRAGLL +A  L+E    R
Sbjct: 393 VLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVR 452

Query: 250 HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309
            D  +W  LL +C    +A +AE     +++ +     +++L+ N+Y   G W+++ K+R
Sbjct: 453 PDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDESKKVR 512

Query: 310 TLMKYSGVKKMPGKSWIEANSKL 332
            + K +G++K PG+SWIE ++K+
Sbjct: 513 VMTKEAGLRKNPGQSWIEVDNKV 535



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 46/258 (17%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-------------------- 47
           VHA  + LGL     V   ++  Y + G   ++ RVFD M                    
Sbjct: 30  VHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGC 89

Query: 48  ----------------LKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFG 87
                            + ++V+ +ALL  + ++G    V+++F EM+    E +  S  
Sbjct: 90  DPDAARDAFARMAAAGTRPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMA 149

Query: 88  IVLRAC--AGLAALRLGKEVH-CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
           + L AC  AG  AL  GK +H C  ++      + + ++L+ +Y K G +D A + F   
Sbjct: 150 VALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDA 209

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTE-GGT-KPDHVSFIGVLSACSHMGLIDR 202
             +N +TWN++I+ +A  G  +EAL +   M + GGT  P+ VS+  V+   +  G  DR
Sbjct: 210 TAKNTVTWNTLITSYAAAGLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDR 269

Query: 203 GRKHFASMTKEYRIKPKI 220
             + F  M +++ + P +
Sbjct: 270 ALELFRRMQQQW-LSPNV 286



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 108/224 (48%), Gaps = 12/224 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+E+H   +   L  + +VE+ L++MY KCG V  + +VFD M  ++ +S +++L G
Sbjct: 302 LRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAG 361

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  +  + +F +M     E D  +F  VL AC     +  G+ +  + +R      
Sbjct: 362 YGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISP 421

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
            +   + +V L  + G +  A ++   MPVR +L  W ++++    +G    A     ++
Sbjct: 422 SMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANV 481

Query: 176 --TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
             +E  +  +H+    + + C   G+ D  +K    MTKE  ++
Sbjct: 482 LQSEDQSTGNHMLITNLYAMC---GMWDESKK-VRVMTKEAGLR 521



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           ++  + LRA A   + R+   VH   +         +   ++  Y++ G    A ++F  
Sbjct: 12  YTLPLALRAAA---SPRVASAVHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDA 68

Query: 144 MPV-RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
           MP  R    WN++IS ++     + A   F  M   GT+PD V++  +LSA +  G
Sbjct: 69  MPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGTRPDAVTWTALLSAHARSG 124


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 200/336 (59%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++GK VH  V  L L  +V V +SL+ MY KC  VD +  +F  +  K  VS +A++ G
Sbjct: 248 LERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILG 307

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     +  F EM+    + D F+   V+ A A L+  R  K +H   IRR   K+
Sbjct: 308 YAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKN 367

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + +ALVD+YAKCG +  A ++F  M  R++ITWN+MI G+  +G G+ ++ +F +M +
Sbjct: 368 VFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKK 427

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           G  KP+ ++F+  LSACSH GL++ G   F SM K+Y I+P ++HY  MVDLLGRAG L 
Sbjct: 428 GTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLN 487

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A   I+    +   +++  +LGAC   +N  + E+ A +I +L PD    +VLL N+Y 
Sbjct: 488 QAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYA 547

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
               W    K+RT+M+ SG++K PG S +E  ++++
Sbjct: 548 TASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVH 583



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 141/249 (56%), Gaps = 7/249 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+GKE+H  VIT G   N+   + +V+MY KC  +++++ +FD+M +++ V  + ++ G
Sbjct: 46  LKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISG 105

Query: 62  YCQTG----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G        V+R+  E    D  +   +L A A    LR+G  VH  Y+ R+G + 
Sbjct: 106 YAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVH-GYVLRAGFES 164

Query: 118 VI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ + +ALVD+Y+KCG V  A  IF  M  R +++WNSMI G+ Q+G  E A+ IF  M 
Sbjct: 165 LVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKML 224

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
           + G +P +V+ +G L AC+ +G ++RG K    +  + ++   +   N ++ +  +   +
Sbjct: 225 DEGVQPTNVTVMGALHACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRV 283

Query: 237 EEAETLIEN 245
           + A  + +N
Sbjct: 284 DIAADIFKN 292



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 116/231 (50%), Gaps = 14/231 (6%)

Query: 58  LLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +L+GY ++   +S +  F  M+   +    ++F  +L+ C   + L+ GKE+H   I   
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              ++   + +V++YAKC  ++ A+ +F +MP R+L+ WN+MISG+AQNG  + AL +  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDL 229
            M+E G +PD ++ + +L A +   L+  G          Y ++   E        +VD+
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMA-----VHGYVLRAGFESLVNVSTALVDM 175

Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
             + G +  A  + +  D R   S W  ++       +A  A  + +K+++
Sbjct: 176 YSKCGSVSIARVIFDGMDHRTVVS-WNSMIDGYVQSGDAEGAMLIFQKMLD 225


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 201/365 (55%), Gaps = 40/365 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QGKE+H+  I  GL  N  V  +LV+MY KC  +  +   FD++ ++++ + +AL+ G
Sbjct: 422 IRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISG 481

Query: 62  YC-----------------------------------QTGDFESVIRIFREME----EID 82
           Y                                    +   ++  +++F EM+      D
Sbjct: 482 YARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPD 541

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
           +++ GI+L AC+ LA +  GK+VH   IR     D  I + LVD+YAKCG +   +Q++ 
Sbjct: 542 IYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYN 601

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           ++   NL+  N+M++ +A +G GEE + IF  M +   +PDHV+F+ VLS+C H G I  
Sbjct: 602 KISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKI 661

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
           G + F  M + Y I P ++HY CMVDLL RAG L+EA  LI+N     DS  W  LLG C
Sbjct: 662 GYECFYLM-ETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGC 720

Query: 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
              +   + E  A+K++EL+P    +YVLL N+Y + GRW+D  K R LM   G++K PG
Sbjct: 721 FIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGMQKSPG 780

Query: 323 KSWIE 327
            SWIE
Sbjct: 781 CSWIE 785



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 107/200 (53%), Gaps = 6/200 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++H+  I  G   +  V++ L+ MY      +++  +FDKM  KN  S +A+L+ 
Sbjct: 47  LTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRL 106

Query: 62  YCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           +   G F     +F E       E++D F F +VL  C GL  L LG++VH   ++    
Sbjct: 107 HLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGFV 166

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +V + +AL+D+Y KCG +D A ++   M  ++ ++WNS+I+    NG   EAL + ++M
Sbjct: 167 TNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENM 226

Query: 176 TEGGTKPDHVSFIGVLSACS 195
                +P+ V++  V+   S
Sbjct: 227 LLSELEPNVVTWSAVIGGFS 246



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 39/225 (17%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++VH  V+  G   NV V ++L+DMYGKCG +DE+ +V + M +K+ VS ++++  
Sbjct: 150 LELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITA 209

Query: 62  YCQTGDFESVIRIFREM--------------------------EEIDLF----------- 84
               G     + +   M                          E ++LF           
Sbjct: 210 CVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPD 269

Query: 85  --SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
             +   VL AC+ +  L +GKE+H   +R     +  + +ALV +Y +CG +  A +IF 
Sbjct: 270 ARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFS 329

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187
           +   +   ++N+MI G+ +NG   +A  +F  M + G + D +S+
Sbjct: 330 KFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISW 374



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 126/305 (41%), Gaps = 77/305 (25%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GKE+H  ++   L  N  V ++LV MY +CG +  + ++F K  +K + S + ++ GY +
Sbjct: 289 GKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLE 348

Query: 65  TGDFESVIRIFREME---------------------------------------EIDLFS 85
            G+      +F +ME                                       E D F+
Sbjct: 349 NGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFT 408

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
            G +L   A +  +R GKE+H   I +    +  +  ALV++Y KC  +  A   F ++ 
Sbjct: 409 LGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEIS 468

Query: 146 VRNLITWNSMISGFA-----------------------------------QNGRGEEALR 170
            R+  TWN++ISG+A                                   +N + + A++
Sbjct: 469 ERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQ 528

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDL 229
           +F++M     +PD  +   +L+ACS +  I RG++ H  S+   Y     I     +VD+
Sbjct: 529 LFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIG--ATLVDM 586

Query: 230 LGRAG 234
             + G
Sbjct: 587 YAKCG 591



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 95/191 (49%), Gaps = 6/191 (3%)

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
           +L LGK++H   I+        +++ L+ +Y+     + A  +F +M ++NL +W +++ 
Sbjct: 46  SLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLR 105

Query: 158 GFAQNGRGEEALRIFDD-MTEG-GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215
                G   +   +F++ + +G G K D   F  VL+ C  +G ++ GR+    M  ++ 
Sbjct: 106 LHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELGRQ-VHGMVLKHG 164

Query: 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA 275
               +   N ++D+ G+ G L+EA+ ++E    + D   W  ++ AC      + A  + 
Sbjct: 165 FVTNVYVGNALIDMYGKCGSLDEAKKVLEGM-TQKDCVSWNSIITACVANGVVYEALDLL 223

Query: 276 KKIM--ELKPD 284
           + ++  EL+P+
Sbjct: 224 ENMLLSELEPN 234


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 197/333 (59%), Gaps = 6/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H + I LGL     V +SL++MY + G ++ + + F+ + +KN +S +       +
Sbjct: 368 GKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAK 427

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             D +       E+E   +    F++  +L   A +  +  G+++H   ++     ++ I
Sbjct: 428 ALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCI 485

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+ +Y+KCG  + A Q+F  M  RN+ITW S+ISGFA++G   +AL +F +M E G 
Sbjct: 486 NNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGV 545

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ V++I VLSACSH+GLID   KHF SM   + I P++EHY CMVDLLGR+GLL EA 
Sbjct: 546 KPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAI 605

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I +     D+ +W   LG+C   RN  + E  AKKI+E +P    +Y+LL N+Y + G
Sbjct: 606 EFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEG 665

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           RW+D   +R  MK   + K  G SWIE +++++
Sbjct: 666 RWDDVAALRKSMKQKKLIKETGYSWIEVDNQVH 698



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 19  GNVVVESSLVDMYGKCGLVDESHR-VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFRE 77
            +V V  +L+DM+ K GL  +S R VFDKM  KN V+ + ++  Y Q G  +  + +F  
Sbjct: 179 SHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCR 238

Query: 78  M----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133
           +       D F+   +L AC  L    LGK++H   IR     DV +   LVD+YAK   
Sbjct: 239 LLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAA 298

Query: 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
           V+ + +IF  M   N+++W ++ISG+ Q+ + +EA+++F +M  G   P+  +F  VL A
Sbjct: 299 VENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKA 358

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC----MVDLLGRAGLLEEA 239
           C+ +     G++          IK  +   NC    ++++  R+G +E A
Sbjct: 359 CASLPDFGIGKQLHGQ-----TIKLGLSTINCVGNSLINMYARSGTMECA 403



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 159/317 (50%), Gaps = 11/317 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H+ VI  GL  +V V  +LVDMY K   V+ S ++F+ ML  N +S +AL+ GY Q
Sbjct: 267 GKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQ 326

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +   +  I++F  M       + F+F  VL+ACA L    +GK++H Q I+        +
Sbjct: 327 SRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCV 386

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L+++YA+ G ++ A + F  +  +NLI++N+     A+    +E+     + T  G 
Sbjct: 387 GNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFNHEVEHTGVGA 446

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P   ++  +LS  + +G I +G +  A + K       +   N ++ +  + G  E A 
Sbjct: 447 SP--FTYACLLSGAACIGTIVKGEQIHALIVKS-GFGTNLCINNALISMYSKCGNKEAAL 503

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPDCHLSYVLLDNVYRA 298
            +  +   R+  + W  ++        A  A  +  +++E+  KP+  ++Y+ + +    
Sbjct: 504 QVFNDMGYRNVIT-WTSIISGFAKHGFATKALELFYEMLEIGVKPN-EVTYIAVLSACSH 561

Query: 299 VGRWNDAFKIRTLMKYS 315
           VG  ++A+K    M Y+
Sbjct: 562 VGLIDEAWKHFNSMHYN 578



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 137/299 (45%), Gaps = 17/299 (5%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSAL 58
            L+ GK +H K+I  GL  + V+ +SL+ +Y KCG  + +  +F  M   K++ VS SA+
Sbjct: 54  NLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAI 113

Query: 59  LQGYCQTG-------DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           +  +            F  +++  R +   + + F  +LR+C+       G  +   ++ 
Sbjct: 114 ISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIF-AFLL 172

Query: 112 RSGCKD--VIIESALVDLYAKCGC-VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168
           ++G  D  V +  AL+D++ K G  +  A  +F +M  +NL+TW  MI+ ++Q G  ++A
Sbjct: 173 KTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDA 232

Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
           + +F  +      PD  +   +LSAC  +     G K   S      +   +     +VD
Sbjct: 233 VDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLG-KQLHSWVIRSGLASDVFVGCTLVD 291

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDC 285
           +  ++  +E +  +  N    H+   W  L+      R    A ++   ++   + P+C
Sbjct: 292 MYAKSAAVENSRKIF-NTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNC 349



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 10/184 (5%)

Query: 62  YCQTGD--FESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q  D  FES+ +    ++      L    ++L+AC     L LGK +H + I      
Sbjct: 13  YLQAKDLKFESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPL 72

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQM--PVRNLITWNSMISGFAQNGRGEEALRIFDD 174
           D ++ ++L+ LY+KCG  + A  IF  M    R+L++W+++IS FA N     AL  F  
Sbjct: 73  DSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLH 132

Query: 175 MTEGGTK---PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           M +       P+   F  +L +CS+      G   FA + K       +     ++D+  
Sbjct: 133 MLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFT 192

Query: 232 RAGL 235
           + GL
Sbjct: 193 KGGL 196



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           +G+++HA ++  G   N+ + ++L+ MY KCG  + + +VF+ M  +N ++ ++++ G+ 
Sbjct: 466 KGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFA 525

Query: 64  QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAAL-RLGKEVHCQYIRRSGCKDV 118
           + G     + +F EM EI +     ++  VL AC+ +  +    K  +  +   S    +
Sbjct: 526 KHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRM 585

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMI 156
              + +VDL  + G +  A +    MP   + + W + +
Sbjct: 586 EHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFL 624


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 211/369 (57%), Gaps = 45/369 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM----------------- 47
           G++VH + +  G   +V V + L+ MY  CG + ++ +VFD+M                 
Sbjct: 135 GRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGK 194

Query: 48  ----------------LKKNSVSSSALLQGYCQTGDFESVIRIFREM-------EEIDLF 84
                             +N+VS + ++ GY ++G     I +F+ M       +E+ L 
Sbjct: 195 VGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLL 254

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQ 143
           +   VL ACA L +L LG+ + C Y+   G  + V + +A++D+YAK G +  A ++F  
Sbjct: 255 A---VLSACADLGSLELGERI-CSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFES 310

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           +  RN++TW ++I+G A +G G EAL +FD M + G KP+ V+FI +LSACSH+G +D G
Sbjct: 311 VNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLG 370

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
            + F SM  +Y I P IEHY CM+DLLGRAG L EAE +I++     ++++W  LL A  
Sbjct: 371 NRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAASN 430

Query: 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGK 323
              +  V ER   ++++L+P+   +Y+LL N+Y  +GRW+++  +R +MK  GVKK+ G+
Sbjct: 431 VHHDIDVGERALYQLIKLEPNNSGNYMLLANLYSNLGRWDESRMMRKMMKGIGVKKLAGE 490

Query: 324 SWIEANSKL 332
           S IE  +++
Sbjct: 491 SSIEVENRV 499



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 133/302 (44%), Gaps = 41/302 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK  K+ H  +I  GL  + +  +  ++     G +  ++ VF      N+   + +++ 
Sbjct: 28  LKTLKQSHCFMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLHNTMIRA 87

Query: 62  YCQTGDFES---VIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
                +  +    I ++R+      + D F+F  VL+    ++ +  G++VH Q +    
Sbjct: 88  LSLVDERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGF 147

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM------------------- 155
              V + + L+ +Y+ CG +  A ++F +M VR++  WN++                   
Sbjct: 148 DSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEM 207

Query: 156 --------------ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
                         ISG+A++GR  EA+ +F  M      PD V+ + VLSAC+ +G ++
Sbjct: 208 MPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLE 267

Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            G +   S      +   +   N ++D+  ++G + +A  + E+ + R+  +   ++ G 
Sbjct: 268 LGER-ICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGL 326

Query: 262 CT 263
            T
Sbjct: 327 AT 328



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ + + V   G+   V + ++++DMY K G + ++  VF+ + ++N V+ + ++ G
Sbjct: 266 LELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITG 325

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     + +F  M +  +     +F  +L AC+ +  + LG         + G   
Sbjct: 326 LATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINP 385

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
            I     ++DL  + G +  A ++   MP   N   W S+++ 
Sbjct: 386 NIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAA 428


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 203/368 (55%), Gaps = 36/368 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  K+ H +V+  G   N+V+ SS++D Y KC  + ++ R+FD+M+ ++ ++ + ++ G
Sbjct: 199 LELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSG 258

Query: 62  YCQTGDFESVIRIFREMEE-----------------------------------IDLFSF 86
           Y Q GD E+   +F  M E                                    D F+F
Sbjct: 259 YAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTF 318

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
              L A A +A+L  GK++H   IR +   + I+ S+L+D+Y+KCGC++    +F  M  
Sbjct: 319 SSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGD 378

Query: 147 R-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           + +++ WN++IS  AQ+GRG+EA+++FDDM   G KPD ++ I +L+ACSH GL+  G +
Sbjct: 379 KWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLR 438

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            + S+T  + + P  EHY C++DLLGRAG  +     +E   C+ +  +W  LLG C   
Sbjct: 439 LYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMH 498

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N      VA+KI+EL P    +YVLL +++ AVGRW     +R LM    V+K    SW
Sbjct: 499 GNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVRKDRAISW 558

Query: 326 IEANSKLN 333
           IE  +K++
Sbjct: 559 IEIENKVH 566



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 153/361 (42%), Gaps = 70/361 (19%)

Query: 2   LKQGKEVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           LK GK VH  +   GL   N  + + L++MY KCG    +++VFD+M  +N  S + +L 
Sbjct: 66  LKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLS 125

Query: 61  GYCQTGDFESVIRIFREMEEIDL-----------------------------------FS 85
           GY + G  +   ++F +M E D+                                   +S
Sbjct: 126 GYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYS 185

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           F  +L  C  +  L L K+ H Q +      +++I S+++D YAKC  +  A ++F +M 
Sbjct: 186 FAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMI 245

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT------------------------- 180
           +R+++ W +M+SG+AQ G  E A  +FD M E                            
Sbjct: 246 IRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTK 305

Query: 181 ------KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
                 +PD  +F   L A + +  ++ G++    + +   I+P     + ++D+  + G
Sbjct: 306 MMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRT-NIRPNTIVVSSLIDMYSKCG 364

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPDCHLSYVLL 292
            LE    + +    + D  LW  ++ +         A ++   ++ L  KPD     VLL
Sbjct: 365 CLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLL 424

Query: 293 D 293
           +
Sbjct: 425 N 425



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 62/95 (65%), Gaps = 3/95 (3%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK--DVIIESALVDLYAKCGCVDFAHQIFL 142
           +   +L+ CA   +L+LGK VH  +++ +G K  +  + + L+++Y+KCG    A+++F 
Sbjct: 52  TLAYLLQQCANTKSLKLGKWVHL-HLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFD 110

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +M  RNL +WN M+SG+A+ G+ + A ++FD M E
Sbjct: 111 EMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPE 145


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 129/327 (39%), Positives = 195/327 (59%), Gaps = 7/327 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K   A V   GL   + V ++LV  + K G ++++++VF+ M   N +S + ++ G+   
Sbjct: 402 KMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFN 461

Query: 66  G----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI-I 120
           G      E    +     + + ++  IVL  CA ++ALR GK++H  YI RSG   V  +
Sbjct: 462 GFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIH-GYILRSGVFSVTSL 520

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE-GG 179
            +AL+ +YAKCG +D++ +IF  M  R++++WN+MIS +AQ+G+G+EA+  F  M + GG
Sbjct: 521 GNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGG 580

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            KPD  +F  VLSACSH GL+D G + F SM  +Y  +P  +H +C+VDLLGRAG LEEA
Sbjct: 581 VKPDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEA 640

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
           E LI +   +  SS+W  L  AC    N  +   VA  ++E++ +    YVLL N+Y A 
Sbjct: 641 ERLINSKHLKIVSSIWWTLFSACAAHGNLRLGRIVAGFLLEIEQNDPAVYVLLSNIYAAA 700

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           G+W +A   R LM+ + V K PG SWI
Sbjct: 701 GQWEEAANTRDLMQKTRVAKQPGCSWI 727



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 141/298 (47%), Gaps = 15/298 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK--NSVSSSALL 59
           L  G+EVH  VI  G      V ++L+ MY   G V +++ VF++      + ++ + ++
Sbjct: 200 LDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMI 259

Query: 60  QGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G    G  E  + +F+EM+E  L     +F  V+ +C+   + R+  +VH Q I+    
Sbjct: 260 GGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCS---SARVSHQVHAQAIKMGFE 316

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
               + +A + +Y+ CG +   H +F ++  ++LI+WN +I  +AQ      A+  F  M
Sbjct: 317 ACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQM 376

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G +PD  +   +L++   + ++    K F ++  +  +  KIE  N +V    + G 
Sbjct: 377 QRAGIEPDEFTIGSLLASSESLEIV----KMFQALVSKNGLNSKIEVSNALVSAFSKHGQ 432

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCH-LSYVL 291
           +E+A  +  N    +  S   ++ G           E+  + +M  LKP+ + LS VL
Sbjct: 433 IEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVL 490



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 38/228 (16%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++HA  I  GL     V ++L+  Y K   +    RVF+++   +  S + LL    +
Sbjct: 72  GNQLHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTK 131

Query: 65  TGDF-------------------------------ESVIRIFREMEEI----DLFSFGIV 89
            G                                 E  + +FREM ++    D ++F  V
Sbjct: 132 LGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASV 191

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF--LQMPVR 147
           L  C+ L  L  G+EVH   I+        + +AL+ +Y   G V  A+++F   +  V 
Sbjct: 192 LSLCS-LELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVH 250

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           + IT+N MI G A  GR EEAL +F +M E   +P  ++F+ V+S+CS
Sbjct: 251 DDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCS 298



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 43/247 (17%)

Query: 48  LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHC 107
           LK  +   + LL  Y ++ D  SV R+F E+E  D++S+  +L AC              
Sbjct: 84  LKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACT------------- 130

Query: 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167
                                 K G + +A  +F Q P    + WN++I+G A+N   E 
Sbjct: 131 ----------------------KLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEI 168

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCM 226
           AL +F +M + G + D  +F  VLS CS + L+D GR+ H   +   + ++  +   N +
Sbjct: 169 ALNLFREMHQLGVRHDKYTFASVLSLCS-LELLDFGREVHTLVIKTGFLVRASV--INAL 225

Query: 227 VDLLGRAGLLEEAETLIENADCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKP 283
           + +   +G + +A  + E A+   HD   + V++G   +      A  + K++ E  L+P
Sbjct: 226 LTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRP 285

Query: 284 DCHLSYV 290
              L++V
Sbjct: 286 -TELTFV 291



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 13/173 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++H  ++  G+     + ++L+ MY KCG +D S R+F+ M  ++ VS +A++  
Sbjct: 499 LRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISA 558

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRAC--AGLA--ALRLGKEVHCQYIRR 112
           Y Q G  +  +  F+ M++      D  +F  VL AC  AGL     R+   +   Y   
Sbjct: 559 YAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFE 618

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISGFAQNGR 164
            G   +   S +VDL  + G ++ A ++     ++ + + W ++ S  A +G 
Sbjct: 619 PGADHL---SCIVDLLGRAGYLEEAERLINSKHLKIVSSIWWTLFSACAAHGN 668


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 125/303 (41%), Positives = 182/303 (60%), Gaps = 4/303 (1%)

Query: 31  YGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSF 86
           +G+ G+VD +  +F++M  ++  + SA+++ Y Q       +  FREM       +  SF
Sbjct: 277 FGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSF 336

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             +L  CA LA    G+E+H   +R S   DV   SAL+ +Y KCG +D A ++F     
Sbjct: 337 ISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEP 396

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           ++++ WNSMI+G+AQ+G GEEAL IFDD+      PD +++IGVL+ACS+ G +  GR+ 
Sbjct: 397 KDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREI 456

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SM     I+    HY+CMVDLLGRAGL++EA  LI N     D+ +W  L+GAC   +
Sbjct: 457 FNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHK 516

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           NA +AE  AKK++EL+P     YVLL ++Y + GRW DA  +R  +    + K PG SWI
Sbjct: 517 NAEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWI 576

Query: 327 EAN 329
           E N
Sbjct: 577 EYN 579



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 121/271 (44%), Gaps = 55/271 (20%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
            +  A + ++ L  +VV  +SL+  Y + GL+ ++ R+F +M ++N V+ + LL G+   
Sbjct: 97  PDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDA 156

Query: 66  GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV 125
           G      ++F EM +                                   KDV+  +A++
Sbjct: 157 GRVNEARKLFDEMPD-----------------------------------KDVVARTAML 181

Query: 126 DLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185
             Y + G +  A  +F +MP RN+++W +MISG+AQNG+   A ++F+ M +     + V
Sbjct: 182 SGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR----NEV 237

Query: 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
           S+  +L      G ++     F +M         +   N M+   G+ G+++ A+ + E 
Sbjct: 238 SWTAMLVGYIQAGHVEDAEDLFNAMPDH-----PVAACNAMMVGFGQHGMVDAAKAMFER 292

Query: 246 ADCRHDSSLW----------EVLLGACTTFR 266
             C  D   W          E L+ A +TFR
Sbjct: 293 M-CARDDGTWSAMIKVYEQNEFLMEALSTFR 322



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 27/220 (12%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  + L+  +   G V+E+ ++FD+M  K+ V+ +A+L GYCQ G       +F EM 
Sbjct: 142 NHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMP 201

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVH---------------CQYIRRSGCKD------- 117
           + ++ S+  ++   A    + L +++                  YI+    +D       
Sbjct: 202 KRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNA 261

Query: 118 -----VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
                V   +A++  + + G VD A  +F +M  R+  TW++MI  + QN    EAL  F
Sbjct: 262 MPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTF 321

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            +M   G +P++ SFI +L+ C+ +   D GR+  A+M +
Sbjct: 322 REMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLR 361



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 6/158 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+E+HA ++      +V   S+L+ MY KCG +D++ RVF+    K+ V  ++++ GY Q
Sbjct: 352 GRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQ 411

Query: 65  TGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCK-DVI 119
            G  E  + IF ++    +   GI    VL AC+    ++ G+E+       S  +    
Sbjct: 412 HGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAA 471

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
             S +VDL  + G VD A  +   MPV  + I W +++
Sbjct: 472 HYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALM 509


>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
 gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
          Length = 603

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 206/366 (56%), Gaps = 42/366 (11%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +E+H  V+  G+   V++ +++V+ Y K   V+E+  +FD++  +++V+ ++++ GYCQ 
Sbjct: 196 REMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQV 255

Query: 66  GDFESVIRIFREMEEID-----------------------------------LFSFGIVL 90
              +  +++F  M + D                                    F+   VL
Sbjct: 256 KKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVL 315

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKD---VIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
            ACA L  +  GKE+HC  +RRS   D   + I +ALVD+Y+KCG +  A  +F +MP R
Sbjct: 316 GACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMPER 375

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           + I+WNSM++GF+ NG G+++L IF++M   G +P HV+F+ VL+ACSH GL+  GR   
Sbjct: 376 DFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLIL 435

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR---HDSSLWEVLLGACTT 264
            SM +++ ++P+ EHY   +D LGR   LEEA   I++   R     +  W  LLGAC  
Sbjct: 436 ESM-EDHGVEPRAEHYAAFIDALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGALLGACRL 494

Query: 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324
             N  +AE VA+ + +L+P     YV+L N+Y A G+W+DA ++R LMK  G+KK    S
Sbjct: 495 HGNIELAEEVAEFLFKLEPGNSGRYVMLSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYS 554

Query: 325 WIEANS 330
           WIE  S
Sbjct: 555 WIEVRS 560



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 128/314 (40%), Gaps = 76/314 (24%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ VHA+++   L  + ++ + LV +Y +      +   FD +  KN+ S + LL  
Sbjct: 52  LRLGRAVHARLVKTALTSHTLLSNRLVALYSRLPSSAAAVAAFDDLPHKNAHSYNTLLAA 111

Query: 62  YCQTGD-FESVIRIFREMEE---------------------------------------- 80
             +  D F   + +F  M                                          
Sbjct: 112 LLRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPG 171

Query: 81  --IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
             +D F+   V  ACAG+ A R  +E+H   +       VI+ +A+V+ Y+K   V+ A 
Sbjct: 172 LAMDRFTVVSVATACAGIRAARPLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEAR 231

Query: 139 QIFLQMPVRNLITWNSMISGF-------------------------------AQNGRGEE 167
            +F Q+ +R+ +TW SMISG+                                QNG  + 
Sbjct: 232 HLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDT 291

Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKP-KIEHYNC 225
           AL +F+ M   G  P   + + VL AC+ +GL+ RG++ H + + +     P  I  +N 
Sbjct: 292 ALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNA 351

Query: 226 MVDLLGRAGLLEEA 239
           +VD+  + G +  A
Sbjct: 352 LVDMYSKCGDMTAA 365



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 42/212 (19%)

Query: 91  RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV--------DFAHQ--- 139
           RA +    LRLG+ VH + ++ +     ++ + LV LY++            D  H+   
Sbjct: 44  RAISTGDVLRLGRAVHARLVKTALTSHTLLSNRLVALYSRLPSSAAAVAAFDDLPHKNAH 103

Query: 140 ---------------------IFLQMPV--RNLITWNSMISGFAQNGRGEEALRIF---- 172
                                +F  MP   RNL+++N+++S    +GR  EALR+     
Sbjct: 104 SYNTLLAALLRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVARLA 163

Query: 173 -DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLL 230
            D     G   D  + + V +AC+ +      R+ H A +     +   +   N MV+  
Sbjct: 164 RDRFLGPGLAMDRFTVVSVATACAGIRAARPLREMHGAVVVSGMELT--VIMANAMVNAY 221

Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
            +A  +EEA  L +    R + +   ++ G C
Sbjct: 222 SKAWRVEEARHLFDQISIRDNVTWTSMISGYC 253


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 125/350 (35%), Positives = 208/350 (59%), Gaps = 22/350 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD----------------KML 48
           G+++H +V+T GL  +  + SSLV+MYGKCG +D++  +                  K  
Sbjct: 285 GRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEP 344

Query: 49  KKNSVSSSALLQGYCQTGDFESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKE 104
           K   VS S+++ GY   G +E  ++ FR    E+  +D+ +   ++ ACA    L  GK+
Sbjct: 345 KARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQ 404

Query: 105 VHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           +H  YI++ G + D  + S+L+D+Y+K G +D A  IF Q+   N++ W SMISG A +G
Sbjct: 405 IHA-YIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHG 463

Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
           +G+EA+ +F+ M   G  P+ V+F+GVL+ACSH+GLI+ G ++F  M   Y I P++EHY
Sbjct: 464 QGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHY 523

Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283
             MV+L GRAG L EA+  I      H +S+W   L +C   +N ++ + V++ +++  P
Sbjct: 524 TSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAP 583

Query: 284 DCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
               +Y+LL N+  +  +W++A  +R+LM   GVKK PG+SW++   +++
Sbjct: 584 SDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIH 633



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 150/314 (47%), Gaps = 57/314 (18%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK +HA ++  G+ G+VV+E+S++D+Y KC   + +   F+ M++K+ VS + ++  
Sbjct: 150 IQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGA 209

Query: 62  YCQTGDFESVIRIFREMEEIDLFS-----------------------------------F 86
           Y + GD E  + +FR     D+ S                                   F
Sbjct: 210 YLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTF 269

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            I L   + L+ + +G+++H + +      D  I S+LV++Y KCG +D A  I   +P+
Sbjct: 270 SIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPL 329

Query: 147 R----------------NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
                             +++W+SM+SG+  NG+ E+ ++ F  M       D  +   +
Sbjct: 330 NFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATI 389

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADC 248
           +SAC++ G+++ G++  A + K   I  +I+ Y  + ++D+  ++G L++A  + E    
Sbjct: 390 ISACANAGILEFGKQIHAYIQK---IGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIK- 445

Query: 249 RHDSSLWEVLLGAC 262
             +  LW  ++  C
Sbjct: 446 EPNVVLWTSMISGC 459



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 125/257 (48%), Gaps = 39/257 (15%)

Query: 27  LVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT-GDFESVIRIFREMEE----I 81
           L+ +Y K   +D +H++FD++  KN+ + + L+ G+ +  G  E V  +FREM+      
Sbjct: 73  LLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGACP 132

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           + ++   VL+ C+    ++ GK +H   +R     DV++E++++DLY KC   ++A   F
Sbjct: 133 NQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFF 192

Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDD--------------------------- 174
             M  +++++WN MI  + + G  E++L +F +                           
Sbjct: 193 ELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALE 252

Query: 175 ----MTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDL 229
               M   GT+   V+F   L   S + L++ GR+ H   +T        I   + +V++
Sbjct: 253 QLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIR--SSLVEM 310

Query: 230 LGRAGLLEEAETLIENA 246
            G+ G +++A T++++ 
Sbjct: 311 YGKCGRMDKASTILKDV 327



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ- 161
           + +H  Y ++   + +   + L+ LY K   +D AH++F ++  +N  TW  +ISGFA+ 
Sbjct: 52  RALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARA 111

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
            G  E    +F +M   G  P+  +   VL  CS    I  G+   A + +   +   + 
Sbjct: 112 AGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRN-GVGGDVV 170

Query: 222 HYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
             N ++DL  +    E AE+  E      D   W +++GA
Sbjct: 171 LENSILDLYLKCKEFEYAESFFE-LMIEKDVVSWNIMIGA 209



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 14/166 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK++HA +  +GL  +  V SSL+DMY K G +D++  +F+++ + N V  ++++ G
Sbjct: 399 LEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISG 458

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSG--- 114
               G  +  I +F  M  + +     +F  VL AC+ +  +  G    C+Y R      
Sbjct: 459 CALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEG----CRYFRMMKDTY 514

Query: 115 --CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMIS 157
               +V   +++V+LY + G +  A     +  + +  + W S +S
Sbjct: 515 HINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLS 560


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 124/334 (37%), Positives = 199/334 (59%), Gaps = 6/334 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ +H + +  G    V V +S + MY KCG V+   R+FD+M  K  ++ +A++ GY Q
Sbjct: 172 GRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQ 231

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVI 119
            G    V+ +F +M+      D F+   VL +CA L A ++G+EV  + +  +G   +V 
Sbjct: 232 NGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVG-ELVEANGFAPNVF 290

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + +AL+ +YA+CG +  A  +F  MPV++L++W +MI  +  +G GE  L +FDDM + G
Sbjct: 291 LSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRG 350

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +PD   F+ VLSACSH GL D+G + F +M +EY+++P  EHY+C+VDLLGRAG L+EA
Sbjct: 351 IRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEA 410

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
              I++     D ++W  LLGAC   +N  +AE    K++E +P     YVL+ N+Y   
Sbjct: 411 MEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDS 470

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
                 ++IR +M+    +K PG S++E   K++
Sbjct: 471 KNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVH 504



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 137/263 (52%), Gaps = 8/263 (3%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS--VSSSALLQG 61
            G+++H  VI  G      V ++L+ MY KCGLV+++ +VF++    +   V  +AL+ G
Sbjct: 68  SGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISG 127

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y           +FR M+E    +D  +   ++  C     L LG+ +H + ++     +
Sbjct: 128 YTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSE 187

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + ++ + +Y KCG V+   ++F +MPV+ LITWN++ISG++QNG   + L +F+ M  
Sbjct: 188 VAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKS 247

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD  + + VLS+C+H+G    G++    + +     P +   N ++ +  R G L 
Sbjct: 248 SGVCPDPFTLVSVLSSCAHLGAKKIGQE-VGELVEANGFAPNVFLSNALISMYARCGNLA 306

Query: 238 EAETLIENADCRHDSSLWEVLLG 260
           +A  + +    +   S W  ++G
Sbjct: 307 KARAVFDIMPVKSLVS-WTAMIG 328



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 8/135 (5%)

Query: 68  FESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIES 122
           F   I ++R M       D FSF  +L++CA L+    G+++HC  IR  GC+ +  + +
Sbjct: 31  FTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIR-GGCEAEPFVLT 89

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNL--ITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           AL+ +Y KCG V+ A ++F + P  +   + +N++ISG+  N +  +A  +F  M E G 
Sbjct: 90  ALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGV 149

Query: 181 KPDHVSFIGVLSACS 195
             D V+ +G++  C+
Sbjct: 150 SVDSVTILGLVPLCT 164



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K G+EV   V   G   NV + ++L+ MY +CG + ++  VFD M  K+ VS +A++  Y
Sbjct: 271 KIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCY 330

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRAC--AGLA--ALRLGKEVHCQYIRRSG 114
              G  E+ + +F +M +     D   F +VL AC  +GL    L L + +  +Y    G
Sbjct: 331 GMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPG 390

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
            +     S LVDL  + G +D A +    MPV  +   W +++
Sbjct: 391 PEHY---SCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALL 430


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 126/325 (38%), Positives = 201/325 (61%), Gaps = 12/325 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           ++V  ++++  Y K G++DE+  +FD + +++++  + ++ GY Q G     + +FR+M 
Sbjct: 5   SLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQML 64

Query: 79  ------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKC 131
                  E+ + +   VL AC    AL  G+ VH  YI  +G   +V + ++L+D+Y+KC
Sbjct: 65  NAKVRPNEVTVLA---VLSACGQTGALETGRWVH-SYIENNGIGINVRVGTSLIDMYSKC 120

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           G ++ A  +F ++  ++++ WNSM+ G+A +G  ++ALR+F +M   G +P  ++FIGVL
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           +ACSH GL+  G K F SM  EY I+PK+EHY CMV+LLGRAG LEEA  L++N +   D
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240

Query: 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311
             LW  LLGAC    N  + E++A+ ++        +YVLL N+Y A G W    ++RTL
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTL 300

Query: 312 MKYSGVKKMPGKSWIEANSKLNHDL 336
           MK SG +K PG S IE N+K++  L
Sbjct: 301 MKESGFEKEPGCSSIEVNNKVHEFL 325



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K ++  +A++  YAK G +D A  +F  +  R+ I WN MI G+AQ+G   E L +F  M
Sbjct: 4   KSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQM 63

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
                +P+ V+ + VLSAC   G ++ GR    S  +   I   +     ++D+  + G 
Sbjct: 64  LNAKVRPNEVTVLAVLSACGQTGALETGR-WVHSYIENNGIGINVRVGTSLIDMYSKCGS 122

Query: 236 LEEAETLIE 244
           LE+A  + E
Sbjct: 123 LEDARLVFE 131



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 87/162 (53%), Gaps = 8/162 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ VH+ +   G+  NV V +SL+DMY KCG ++++  VF+++  K+ V+ ++++ G
Sbjct: 88  LETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVG 147

Query: 62  YCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y   G  +  +R+F+EM     +  D+   G VL AC+    +  G +         G +
Sbjct: 148 YAMHGFSQDALRLFKEMCMIGYQPTDITFIG-VLNACSHAGLVSEGWKFFYSMKDEYGIE 206

Query: 117 DVIIESA-LVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMI 156
             +     +V+L  + G ++ A+++   M + ++ + W +++
Sbjct: 207 PKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLL 248


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 197/336 (58%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G +VH  +I  GL  NV V SSL+D+Y KCGL + + +VF  M  +N V+ ++++  
Sbjct: 492 LRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISC 551

Query: 62  YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y +    E  I +F  M    +F    S   VL A +  A+L  GK +H   +R     D
Sbjct: 552 YSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSD 611

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             +++AL+D+Y KCG   +A  IF +M  ++LITWN MI G+  +G    AL +FD+M +
Sbjct: 612 THLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKK 671

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD V+F+ ++SAC+H G ++ G+  F  M ++Y I+P +EHY  MVDLLGRAGLLE
Sbjct: 672 AGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLE 731

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA + I+      DSS+W  LL A  T  N  +    A+K++ ++P+   +YV L N+Y 
Sbjct: 732 EAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYM 791

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G  N+A K+  LMK  G+ K PG SWIE + + N
Sbjct: 792 EAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTN 827



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 138/262 (52%), Gaps = 10/262 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK VHA++    +     +ES+L+ +Y KCG   +++ VF  M +K+ V+  +L+ G C+
Sbjct: 392 GKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCK 451

Query: 65  TGDFESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            G F+  +++F +M++       D      V  ACAGL ALR G +VH   I+     +V
Sbjct: 452 NGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNV 511

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + S+L+DLY+KCG  + A ++F  M   N++ WNSMIS +++N   E ++ +F+ M   
Sbjct: 512 FVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQ 571

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G  PD VS   VL A S    + +G K     T    I       N ++D+  + G  + 
Sbjct: 572 GIFPDSVSITSVLVAISSTASLLKG-KSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKY 630

Query: 239 AETLIENADCRHDSSL-WEVLL 259
           AE + +    +H S + W +++
Sbjct: 631 AENIFKKM--QHKSLITWNLMI 650



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 126/241 (52%), Gaps = 7/241 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++H  V+ +GL  +  V +SL+ MY KCG+V E+  VF  ++ K     +A++  Y +
Sbjct: 291 GRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAE 350

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                S + +F  M +     D F+   V+  C+ L     GK VH +  +R       I
Sbjct: 351 NDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTI 410

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT--EG 178
           ESAL+ LY+KCGC   A+ +F  M  ++++ W S+ISG  +NG+ +EAL++F DM   + 
Sbjct: 411 ESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDD 470

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             KPD      V +AC+ +  +  G +   SM K   +   +   + ++DL  + GL E 
Sbjct: 471 SLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVL-NVFVGSSLIDLYSKCGLPEM 529

Query: 239 A 239
           A
Sbjct: 530 A 530



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 24/279 (8%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSS---- 56
            L  GK +H  V+ LG   +  + +SLV+MY KCG +D + +VFD   +  S  S+    
Sbjct: 75  NLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVT 134

Query: 57  ---ALLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRL--GKEVHC 107
              +++ GY +   F+  +  FR M       D FS  IV+         R   GK++H 
Sbjct: 135 VWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHG 194

Query: 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGE 166
             +R S   D  +++AL+D+Y K G    A ++F+++  + N++ WN MI GF  +G  E
Sbjct: 195 FMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICE 254

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC- 225
            +L ++        K    SF G L ACS       GR+    + K   +    + Y C 
Sbjct: 255 SSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVK---MGLHNDPYVCT 311

Query: 226 -MVDLLGRAGLLEEAETLIENADCRHDSSL--WEVLLGA 261
            ++ +  + G++ EAET+     C  D  L  W  ++ A
Sbjct: 312 SLLSMYSKCGMVGEAETVFS---CVVDKRLEIWNAMVAA 347



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 116/217 (53%), Gaps = 5/217 (2%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALL 59
           R ++GK++H  ++   L  +  ++++L+DMY K GL  ++ RVF ++  K N V  + ++
Sbjct: 185 RREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMI 244

Query: 60  QGYCQTGDFESVIRIF--REMEEIDLFS--FGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            G+  +G  ES + ++   +   + L S  F   L AC+       G+++HC  ++    
Sbjct: 245 VGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLH 304

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D  + ++L+ +Y+KCG V  A  +F  +  + L  WN+M++ +A+N  G  AL +F  M
Sbjct: 305 NDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFM 364

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
            +    PD  +   V+S CS +GL + G+   A + K
Sbjct: 365 RQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFK 401



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 106/231 (45%), Gaps = 17/231 (7%)

Query: 43  VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLA 97
           V D  +   S++S   ++   Q G++   + ++ + +        +F+F  +L+AC+ L 
Sbjct: 17  VADSYISPASINSG--IRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALT 74

Query: 98  ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF-------LQMPVRNLI 150
            L  GK +H   +      D  I ++LV++Y KCG +D+A Q+F         +  R++ 
Sbjct: 75  NLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVT 134

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR--GRKHFA 208
            WNSMI G+ +  R +E +  F  M   G +PD  S   V+S     G   R  G++   
Sbjct: 135 VWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHG 194

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            M +   +         ++D+  + GL  +A  +    + + +  LW V++
Sbjct: 195 FMLRN-SLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMI 244


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 203/336 (60%), Gaps = 7/336 (2%)

Query: 5   GKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSALLQGY 62
           G ++H  ++  GL CG+  + +SL+ MY     + +++ +F +    K+ V  +AL+ G+
Sbjct: 538 GLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGH 597

Query: 63  CQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            Q    +  + ++REM +     D  +F  VL+ACA L++L  G+E+H          D 
Sbjct: 598 IQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDE 657

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +  SALVD+YAKCG V  + Q+F ++  + ++I+WNSMI GFA+NG  + AL++FD+MT+
Sbjct: 658 LTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQ 717

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               PD V+F+GVL+ACSH G +  GR+ F  M   Y I+P+++HY CMVDLLGR G L+
Sbjct: 718 SCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLK 777

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EAE  I+  +   ++ +W  LLGAC    +    +R AKK++EL+P     YVLL N+Y 
Sbjct: 778 EAEEFIDKLEVEPNAMIWANLLGACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNMYA 837

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           A G W++A  +R  M    ++K+PG SWI    + N
Sbjct: 838 ASGNWDEARSLRRTMIKKDIQKIPGCSWIVVGQETN 873



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 149/286 (52%), Gaps = 5/286 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VHA  I  G   ++ V SSL++MYGKC + D++ +VFD + +KN +  +A+L  
Sbjct: 233 LNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGV 292

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G   +V+ +F +M       D F++  +L  CA    L +G+++H   I++    +
Sbjct: 293 YSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSN 352

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +AL+D+YAK G +  A + F  M  R+ I+WN++I G+ Q      A  +F  M  
Sbjct: 353 LFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMIL 412

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD VS   +LSAC ++ +++ G++ F  ++ +  ++  +   + ++D+  + G ++
Sbjct: 413 DGIVPDEVSLASILSACGNIKVLEAGQQ-FHCLSVKLGLETNLFAGSSLIDMYSKCGDIK 471

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283
           +A     +   R   S+  ++ G         +      +I+ LKP
Sbjct: 472 DAHKTYSSMPERSVVSVNALIAGYALKNTKESINLLHEMQILGLKP 517



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 127/241 (52%), Gaps = 7/241 (2%)

Query: 26  SLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL 83
           ++++ Y   G +D++ ++F +M    +N V+ + ++ G+ +T  +E  +  F +M +  +
Sbjct: 154 TVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGV 213

Query: 84  FS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
            S       VL A A LAAL  G  VH   I++     + + S+L+++Y KC   D A Q
Sbjct: 214 KSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQ 273

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F  +  +N+I WN+M+  ++QNG     + +F DM   G  PD  ++  +LS C+    
Sbjct: 274 VFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEY 333

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           ++ GR+  +++ K+ R    +   N ++D+  +AG L+EA    E+   R   S   +++
Sbjct: 334 LEVGRQLHSAIIKK-RFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIV 392

Query: 260 G 260
           G
Sbjct: 393 G 393



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 135/264 (51%), Gaps = 8/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G++ H   + LGL  N+   SSL+DMY KCG + ++H+ +  M +++ VS +AL+ G
Sbjct: 435 LEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAG 494

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRS-GCK 116
           Y      ES I +  EM+ + L     +F  ++  C G A + LG ++HC  ++R   C 
Sbjct: 495 YALKNTKES-INLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCG 553

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
              + ++L+ +Y     +  A+ +F +   +++++ W ++ISG  QN   + AL ++ +M
Sbjct: 554 SEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREM 613

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            +    PD  +F+ VL AC+ +  +  GR+   S+             + +VD+  + G 
Sbjct: 614 RDNNISPDQATFVTVLQACALLSSLHDGRE-IHSLIFHTGFDLDELTSSALVDMYAKCGD 672

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           ++ +  + E    + D   W  ++
Sbjct: 673 VKSSVQVFEELATKKDVISWNSMI 696



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 82  DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
           D F+F + L ACA L  L LG+ VH   I+         + AL+ LYAKC  +  A  IF
Sbjct: 46  DQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIF 105

Query: 142 LQMPVRNL--ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
              P  +L  ++W ++ISG+ Q G   EAL IFD M      PD V+ + VL+A   +G 
Sbjct: 106 ASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAV-PDQVALVTVLNAYISLGK 164

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
           +D   + F  M    R    +  +N M+    +    EEA
Sbjct: 165 LDDACQLFQQMPIPIR---NVVAWNVMISGHAKTAHYEEA 201



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 97/191 (50%), Gaps = 10/191 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQ 60
           L  G+E+H+ +   G   + +  S+LVDMY KCG V  S +VF+++  KK+ +S ++++ 
Sbjct: 638 LHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIV 697

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+ + G  +  +++F EM +     D  +F  VL AC+    +  G+++    +   G +
Sbjct: 698 GFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYGIE 757

Query: 117 DVIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNG---RGEEALRI 171
             +   A +VDL  + G +  A +   ++ V  N + W +++     +G   RG+ A + 
Sbjct: 758 PRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEKRGQRAAKK 817

Query: 172 FDDMTEGGTKP 182
             ++    + P
Sbjct: 818 LIELEPQSSSP 828



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 11/167 (6%)

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
           WN  + G  ++   E  L+ +      G  PD  +F   LSAC+ +  +  GR   + + 
Sbjct: 16  WNWRVQG-TKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCV- 73

Query: 212 KEYRIKPKIEHYN----CMVDLLGRAGLLEEAETLIENADCRHDSSL-WEVLLGACTTFR 266
               IK  +E  +     ++ L  +   L  A T+  +A   H  ++ W  L+       
Sbjct: 74  ----IKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAG 129

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
             H A  +  K+        ++ V + N Y ++G+ +DA ++   M 
Sbjct: 130 LPHEALHIFDKMRNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMP 176


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 220/370 (59%), Gaps = 36/370 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCG-------------------------- 35
           L++G+EVH++ + LG   N +V   ++++YGKCG                          
Sbjct: 163 LREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSY 222

Query: 36  ----LVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL----FSFG 87
               LV+E+  VF ++ +K++V  +A++ G+ +  +    +  FR M+  ++    F+  
Sbjct: 223 SDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIV 282

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
            VL AC+ L AL +G+ VH  Y+R+   + ++ + +AL+++Y++CG +D A  +F +M  
Sbjct: 283 CVLSACSQLGALEIGRWVH-SYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKD 341

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           R++IT+N+MISG + NG+  +A+ +F  M     +P +V+F+GVL+ACSH GL+D G + 
Sbjct: 342 RDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEI 401

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           F SM ++YR++P+IEHY CMVDLLGR G LEEA  LI       D  +   LL AC   +
Sbjct: 402 FHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHK 461

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  + E+VAK++ +       +YVLL +VY + G+W +A ++R  MK +G++K PG S I
Sbjct: 462 NLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 521

Query: 327 EANSKLNHDL 336
           E N++++  L
Sbjct: 522 EVNNEIHEFL 531



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 130/277 (46%), Gaps = 35/277 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + Q   +HA++I  G   +  +   L+    KC  +D + R+F      N    +AL+ G
Sbjct: 62  INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG 121

Query: 62  YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +  +G++   I+++  M  E I  D +    +L+AC    ALR G+EVH + ++     +
Sbjct: 122 FVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSN 181

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPV------------------------------R 147
            ++   +++LY KCG +  A ++F +MP                               +
Sbjct: 182 RLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRK 241

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           + + W +MI GF +N     AL  F  M     +P+  + + VLSACS +G ++ GR   
Sbjct: 242 DTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVH 301

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           + M K + I+  +   N ++++  R G ++EA+T+ +
Sbjct: 302 SYMRK-FEIELNLFVGNALINMYSRCGSIDEAQTVFD 337


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 124/336 (36%), Positives = 196/336 (58%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ VHA+V+      + VV ++L+ +Y + G  DE+ RVFD M  +N VS ++L+ G
Sbjct: 194 LQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAG 253

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             +       I  FR M+         +   +L  CA + AL  GKE+H   ++ +   D
Sbjct: 254 LVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPD 313

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + ++LVD+YAKCG +D+  ++F  M  ++L +WN++I+G+A NGR  EA+  F +M  
Sbjct: 314 APVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMIC 373

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  PD ++FI +LS CSH GL D G + F  M  +Y I P +EHY C+VD+LGRAG ++
Sbjct: 374 SGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIK 433

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  +++N   +   S+W  LL +C    N  +AE VAK++ EL+P+   +YV+L N+Y 
Sbjct: 434 EALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYA 493

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
             G W     +R  M+  G+ K  G SW++  SK++
Sbjct: 494 NAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIH 529



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 145/305 (47%), Gaps = 10/305 (3%)

Query: 17  LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSS---ALLQGYCQTGDFESVIR 73
           L  N  ++  L+ ++  C  VDE+ RVF+   +   +  S   A+  GY + G  +  + 
Sbjct: 105 LLNNPTLKGKLITLFSVCRRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALL 164

Query: 74  IFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129
           ++ EM     ++  F+F + L+AC+ L  L+ G+ VH Q ++ +   D ++ +AL+ LY+
Sbjct: 165 LYYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYS 224

Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
           + GC D A ++F  MP RN+++WNS+I+G  +     EA+  F  M   G     V+   
Sbjct: 225 EDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTT 284

Query: 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
           +L  C+ +  +  G++  A + K    KP     N +VD+  + G ++    +      +
Sbjct: 285 ILPVCARVTALGSGKEIHAVIVKS-TAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGK 343

Query: 250 HDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSYVLLDNVYRAVGRWNDAFKI 308
             +S   ++ G     R     E   + I     PD  ++++ L +     G  +D  ++
Sbjct: 344 DLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPD-GITFIALLSGCSHAGLADDGCRL 402

Query: 309 RTLMK 313
             +MK
Sbjct: 403 FEMMK 407


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 122/322 (37%), Positives = 201/322 (62%), Gaps = 4/322 (1%)

Query: 16  GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
           GL  + V  S+++  Y +CG +DE+ + F ++ +K+ V  + ++ G  Q G  E  + +F
Sbjct: 251 GLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLF 310

Query: 76  REM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131
           REM  E +  D F+   V+ +CA LA+L  G+ VH + +      D+++ SALVD+Y+KC
Sbjct: 311 REMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKC 370

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           G    A  +F +M  RN+I+WNSMI G+AQNG+  EAL ++++M     KPD+++F+GVL
Sbjct: 371 GETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVL 430

Query: 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           SAC H GL++RG+ +F S++K + + P  +HY+CM++LLGRAG +++A  LI++     +
Sbjct: 431 SACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPN 490

Query: 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311
             +W  LL  C    + +  E  A+ + EL P     Y++L N+Y A GRW D   +R+L
Sbjct: 491 CLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSL 550

Query: 312 MKYSGVKKMPGKSWIEANSKLN 333
           MK + +KK    SWIE +++++
Sbjct: 551 MKNNKIKKFAAYSWIEIDNQVH 572



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 158/319 (49%), Gaps = 17/319 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY----CQTGDFESVIRIF 75
           +V   ++++  Y K G V++   VFD+M   ++VS + ++ G+    C +   E  +R+ 
Sbjct: 88  DVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQ 147

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
            E  E   ++   VL AC+ L  ++ GK++H + +  S  + V + +AL ++YAKCG +D
Sbjct: 148 EEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALD 207

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A  +F +M  +N+++WNSMISG+ QNG+ E   ++F +M   G  PD V+   +LSA  
Sbjct: 208 QARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYF 267

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
             G ID   K F  + ++ ++        C  +      LL   E L+EN   R D+   
Sbjct: 268 QCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENV--RPDNFTI 325

Query: 256 EVLLGACTTFRNAHVAERVAKK--IMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
             ++ +C    +    + V  K  I  +  D  +S  L+D +Y   G   DA+ +     
Sbjct: 326 SSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVD-MYSKCGETADAWIV----- 379

Query: 314 YSGVKKMPGKSWIEANSKL 332
               K+M  ++ I  NS +
Sbjct: 380 ---FKRMLTRNVISWNSMI 395



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 10/202 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+ VH K +  G+  +++V S+LVDMY KCG   ++  VF +ML +N +S ++++ G
Sbjct: 338 LCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILG 397

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G     + ++ EM   +L     +F  VL AC     +  G+       +  G   
Sbjct: 398 YAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNP 457

Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQN---GRGEEALRIF 172
                S +++L  + G +D A  +   M    N + W++++S    N     GE A R  
Sbjct: 458 TFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHL 517

Query: 173 DDMTEGGTKPDHVSFIGVLSAC 194
            ++      P ++    + +AC
Sbjct: 518 FELDPHNAGP-YIMLSNIYAAC 538



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 1/129 (0%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +DV   +A++  Y+K G V+    +F QM V + +++N++I+GF+ NG   +AL  F  M
Sbjct: 87  RDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRM 146

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E G +    + + VL ACS +  I RG++    +     +   +  +N + ++  + G 
Sbjct: 147 QEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVAT-SLGESVFVWNALTNMYAKCGA 205

Query: 236 LEEAETLIE 244
           L++A  L +
Sbjct: 206 LDQARWLFD 214


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 123/332 (37%), Positives = 194/332 (58%), Gaps = 17/332 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+VH  +    +  N+ V ++L+DMY KCG ++ ++ VF  M+ K+ +S + ++  
Sbjct: 368 LDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI-- 425

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
               G+ +            D  +   VL ACA L+AL  GKE+H   +R     D  + 
Sbjct: 426 ----GELKP-----------DSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVA 470

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALVDLY KCG +  A  +F  +P ++L++W  MI+G+  +G G EA+  F++M + G +
Sbjct: 471 NALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIE 530

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD VSFI +L ACSH GL+++G + F  M  ++ I+PK+EHY CMVDLL R G L +A  
Sbjct: 531 PDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYE 590

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
            IE      D+++W  LL  C  + +  +AE+VA+++ EL+P+    YVLL N+Y    +
Sbjct: 591 FIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEK 650

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           W +  ++R  +   G++K PG SWIE   K+N
Sbjct: 651 WEEVKRLREKIGKQGLRKNPGCSWIEIKGKVN 682



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 141/266 (53%), Gaps = 31/266 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH+  I       +   ++L+DMY KCG +D + RVF+KM ++N VS ++++ G
Sbjct: 267 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + G  +  I++ ++ME+    +D+ +   +L ACA   +L  GK+VH  YI+ +  + 
Sbjct: 327 YTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVH-DYIKANNMES 385

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ + +AL+D+YAKCG ++ A+ +F  M V+++I+WN+MI                    
Sbjct: 386 NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI-------------------- 425

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            G  KPD  +   VL AC+ +  ++RG++ H   +   Y     +   N +VDL  + G+
Sbjct: 426 -GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVA--NALVDLYVKCGV 482

Query: 236 LEEAETLIENADCRHDSSLWEVLLGA 261
           L  A  L +    + D   W V++  
Sbjct: 483 LGLARLLFDMIPSK-DLVSWTVMIAG 507



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 38  DESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRAC 93
           + +  +FDK+  ++ +S ++++ GY   G  E  + I+++M     ++DL +   VL  C
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 94  AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
           A    L LGK VH   I+ S  + +   + L+D+Y+KCG +D A ++F +M  RN+++W 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           SMI+G+ ++GR + A+++   M + G K D V+   +L AC+  G +D G K      K 
Sbjct: 322 SMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNG-KDVHDYIKA 380

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             ++  +   N ++D+  + G +E A ++      + D   W  ++G
Sbjct: 381 NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMIG 426



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 98/255 (38%), Gaps = 55/255 (21%)

Query: 62  YCQTGDFESVIRI--FREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           +CQ GD E+ + +    +  E++  ++  VL+ CAGL +   GK+VH      S   D  
Sbjct: 76  FCQLGDLENAMELICMCKKSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEA 135

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITW--------------------------- 152
           +   LV  YA CG +    ++F  M  +N+  W                           
Sbjct: 136 LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195

Query: 153 ------------------------NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI 188
                                   NSMISG+  NG  E  L I+  M   G   D  + I
Sbjct: 196 IEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATII 255

Query: 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADC 248
            VL  C++ G +  G K   S+  +   + +I   N ++D+  + G L+ A  + E    
Sbjct: 256 SVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 249 RHDSSLWEVLLGACT 263
           R+  S W  ++   T
Sbjct: 315 RNVVS-WTSMIAGYT 328


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 133/334 (39%), Positives = 197/334 (58%), Gaps = 9/334 (2%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KKNSVSSSALL 59
            L++G+ +HA+    G    V V++SLV +YG CGL + +H+VFD+M    +N VS +++L
Sbjct: 820  LREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSML 879

Query: 60   QGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG- 114
              +   G    V+ +F EM  +D     F+   VL ACA   AL LG+ VH  Y+ + G 
Sbjct: 880  NSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHV-YVEKVGL 938

Query: 115  CKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFD 173
             ++  + +AL+DLYAKCG V+ A +IF +M + R +++W S+I G A NG G+EAL +F 
Sbjct: 939  VENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFS 998

Query: 174  DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
             M      P  ++ +GVL ACSH GL+D G ++F  M ++Y I P+IEH  CMVDLLGRA
Sbjct: 999  LMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRA 1058

Query: 234  GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
            G +EEA   I       ++ +W  LLG+C   +   + +   ++++EL P     YVLL 
Sbjct: 1059 GRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLS 1118

Query: 294  NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            N+Y AVG W D   +R  M    V+K PG S +E
Sbjct: 1119 NLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVE 1152



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 3/186 (1%)

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           R +   D  ++  +++ACA L ALR G+ +H +  +      V ++++LV LY  CG  +
Sbjct: 797 RRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFE 856

Query: 136 FAHQIFLQMPV--RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
            AH++F +MPV  RNL++WNSM++ FA NGR  E L +F +M      PD  + + VL+A
Sbjct: 857 SAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTA 916

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+  G +  GR+    + K   ++      N ++DL  + G + +A  + E         
Sbjct: 917 CAEFGALALGRRVHVYVEKVGLVE-NSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVV 975

Query: 254 LWEVLL 259
            W  L+
Sbjct: 976 SWTSLI 981


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 197/348 (56%), Gaps = 22/348 (6%)

Query: 2   LKQGKEVHAKVITLGLCG------------NVVVESSLVDMYGKCGLVDESHRVFDKMLK 49
           L QG E HA  +   L              ++VV ++L+DMY KC     +  +F+ + +
Sbjct: 411 LSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPR 470

Query: 50  K--NSVSSSALLQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRL 101
           +  N V+ + ++ GY Q GD    +++F EM         + ++   +L ACA L++LR+
Sbjct: 471 RERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRM 530

Query: 102 GKEVHCQYIRRSGCKDVI--IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF 159
           GK++H    R    +  +  + + L+D+Y+KCG VD A  +F  MP RN ++W SM+SG+
Sbjct: 531 GKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGY 590

Query: 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219
             +GRG+EAL IFD M + G  PD +SF+ +L ACSH G++D+G  +F  M  +Y +   
Sbjct: 591 GMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIAS 650

Query: 220 IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM 279
            +HY C++DLL R+G L++A   I+       +++W  LL AC    N  +AE    K++
Sbjct: 651 AQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLV 710

Query: 280 ELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
            +K +   SY L+ N+Y    RW D  +IR LMK SG+KK PG SW++
Sbjct: 711 SMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQ 758



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 148/315 (46%), Gaps = 56/315 (17%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L Q KE+H+  I  G   +  V ++L+D Y KCG + ++  VF+ M  K+ VS +A++ G
Sbjct: 275 LPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTG 334

Query: 62  YCQTGDFESVIRIFREM--------------------------EEIDLFSFGIV------ 89
           Y Q+G F +   +F+ M                          E +D F   I+      
Sbjct: 335 YTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPN 394

Query: 90  -------LRACAGLAALRLGKEVHCQYIRR------------SGCKDVIIESALVDLYAK 130
                  L ACA L AL  G E H   +++               +D+++ +AL+D+Y+K
Sbjct: 395 SVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSK 454

Query: 131 CGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG--GTKPDHVS 186
           C     A  IF  +P   RN++TW  MI G+AQ G   +AL++F +M        P+  +
Sbjct: 455 CRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYT 514

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-NCMVDLLGRAGLLEEAETLIEN 245
              +L AC+H+  +  G++  A +T+ +  +  +    NC++D+  + G ++ A  + ++
Sbjct: 515 ISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 246 ADCRHDSSLWEVLLG 260
              R++ S   ++ G
Sbjct: 575 MPKRNEVSWTSMMSG 589



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 162/354 (45%), Gaps = 66/354 (18%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALL 59
           + G   H  +   G   NV V ++LV MY + G ++++  VFD++ +K   + +S ++++
Sbjct: 166 RSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIV 225

Query: 60  QGYCQTGDFESVIRIFREMEEI----------DLFSFGIVLRACAGLAALRLGKEVHCQY 109
             + +  +  + + +F EM  I          D+ S   +L ACA L AL   KE+H   
Sbjct: 226 AAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYA 285

Query: 110 IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM-------------- 155
           IR     D  + +AL+D YAKCG +  A  +F  M  +++++WN+M              
Sbjct: 286 IRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAF 345

Query: 156 ---------------------ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
                                I+G+AQ G G+EAL  F  M   G++P+ V+ I +LSAC
Sbjct: 346 ELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSAC 405

Query: 195 SHMGLIDRGRKHFASMTKEYRIK-----------PKIEHYNCMVDLLGRAGLLEEAETLI 243
           + +G + +G +  A   K+  +              +  +N ++D+  +    + A T+ 
Sbjct: 406 ASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIF 465

Query: 244 ENADCRHDSSL-WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            +   R  + + W V++G    + +++ A ++  +++  KP     Y +  N Y
Sbjct: 466 NSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMIS-KP-----YAVAPNAY 513



 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 1/123 (0%)

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           + +V  Y  CG    A  +  ++     + WN ++    + GR + A+ +   M   GTK
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PDH +    L AC  +     G   F  +      +  +   N +V +  R+G LE+A  
Sbjct: 147 PDHFTLPYALKACGELPSYRSGSA-FHGLICCNGFESNVFVCNALVAMYSRSGSLEDASL 205

Query: 242 LIE 244
           + +
Sbjct: 206 VFD 208


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 126/332 (37%), Positives = 194/332 (58%), Gaps = 6/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G+ +H   I   L   V+VE++L+DMY KC  V+ S RVF K  K+ +   +A++ G
Sbjct: 341 LKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISG 400

Query: 62  YCQTGDFESVIRIFREM--EEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     I +F++M  E +D    +   +L A A L  L+  + +H   IR      
Sbjct: 401 CIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSR 460

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRN--LITWNSMISGFAQNGRGEEALRIFDDM 175
           + + + L+D+Y+KCG ++ AH IF  +P ++  +ITW+++I+G+  +G GE A+ +FD M
Sbjct: 461 IEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQM 520

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G KP+ ++F  +L ACSH GL+D G   F  M ++ ++  + +HY C++DLLGRAG 
Sbjct: 521 VQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGR 580

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           LEEA  LI     R + ++W  LLG+C    N  + E  AK + EL+P    +YVLL N+
Sbjct: 581 LEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANI 640

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           Y AVGRW DA  +R +M   G++K P  S IE
Sbjct: 641 YSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIE 672



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 132/247 (53%), Gaps = 5/247 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ VHA V    L  ++ V +SL+DMY KCG +DE+  +F +M K++ VS + ++ G
Sbjct: 240 LEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNG 299

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   GD  S + + + M+    + +  +   VL ACA L +L+ G+ +H   IR+    +
Sbjct: 300 YILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESE 359

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           VI+E+AL+D+YAKC  V+ + ++F +   +    WN++ISG   NG   +A+ +F  M  
Sbjct: 360 VIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLM 419

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+  +   +L A + +  + + R     + +   +  +IE    ++D+  + G LE
Sbjct: 420 EAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLS-RIEVATILIDIYSKCGSLE 478

Query: 238 EAETLIE 244
            A  +  
Sbjct: 479 SAHNIFN 485



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 138/266 (51%), Gaps = 10/266 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVV---VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           +   K++HA  ITLGL  +     + SSL   Y   G    + ++FD++   +  S +A+
Sbjct: 34  IPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAM 93

Query: 59  LQGYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           ++ Y  +G     + +F +M        D +++  V++AC       +G  +H + +   
Sbjct: 94  IRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSG 153

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D  ++++L+ +Y  CG ++ A ++F  M  R L++WN+MI+G+ +NG  +EAL +FD
Sbjct: 154 FDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFD 213

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M   G +PD  + + VL  CS++  ++ GR+  A + +   +   I  +N ++D+  + 
Sbjct: 214 WMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHA-LVEVKNLGEDISVWNSLLDMYAKC 272

Query: 234 GLLEEAETLIENADCRHDSSLWEVLL 259
           G ++EA+ +    D R D   W  ++
Sbjct: 273 GNMDEAQMIFYEMDKR-DVVSWTTMM 297



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 114/206 (55%), Gaps = 4/206 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           + G  +HA+ +  G   +  V++SL+ MY  CG ++ + RVFD M ++  VS + ++ GY
Sbjct: 140 EMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGY 199

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            + G  +  + +F  M     E D  +   VL  C+ L  L +G+ VH     ++  +D+
Sbjct: 200 FKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDI 259

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + ++L+D+YAKCG +D A  IF +M  R++++W +M++G+  NG    AL +   M   
Sbjct: 260 SVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFE 319

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGR 204
             KP+ V+   VLSAC+ +  +  GR
Sbjct: 320 SVKPNFVTLASVLSACASLYSLKHGR 345


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 197/341 (57%), Gaps = 8/341 (2%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
            L QG+ +H+  I LG   ++   ++ + MY K      +  +FD M  +  VS + ++ G
Sbjct: 878  LTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISG 937

Query: 62   YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
            Y + GD +  + +F  M    E+ DL +   ++  C    +L  GK +  +     GCK 
Sbjct: 938  YAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDAR-ADIYGCKR 996

Query: 117  -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
             +V+I +AL+D+Y+KCG +  A  IF   P + ++TW +MI+G+A NG   EAL++F  M
Sbjct: 997  DNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKM 1056

Query: 176  TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
             +   KP+H++F+ VL AC+H G +++G ++F  M + Y I P ++HY+CMVDLLGR G 
Sbjct: 1057 IDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGK 1116

Query: 236  LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
            LEEA  LI N   + D+ +W  LL AC   RN  +AE+ A+ +  L+P     YV + N+
Sbjct: 1117 LEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANI 1176

Query: 296  YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
            Y A G W+   +IR++MK   +KK PG+S I+ N K NH  
Sbjct: 1177 YAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGK-NHSF 1216



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 109/203 (53%), Gaps = 6/203 (2%)

Query: 8   VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
           VHA +I      +V V ++ VDM+ KC  VD + +VF++M ++++ + +A+L G+CQ+G 
Sbjct: 680 VHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGH 739

Query: 68  FESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
            +    +FREM   EI  D  +   ++++ +   +L+L + +H   IR      V + + 
Sbjct: 740 TDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANT 799

Query: 124 LVDLYAKCGCVDFAHQIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
            +  Y KCG +D A  +F  +    R +++WNSM   ++  G   +A  ++  M     K
Sbjct: 800 WISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFK 859

Query: 182 PDHVSFIGVLSACSHMGLIDRGR 204
           PD  +FI + ++C +   + +GR
Sbjct: 860 PDLSTFINLAASCQNPETLTQGR 882



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 14/204 (6%)

Query: 74  IFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129
           +FREM+    E + F+F  V +ACA LA +   + VH   I+     DV + +A VD++ 
Sbjct: 645 LFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFV 704

Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
           KC  VD+A ++F +MP R+  TWN+M+SGF Q+G  ++A  +F +M      PD V+ + 
Sbjct: 705 KCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMT 764

Query: 190 VLSACSHMGLIDRGRKHFASMTK---EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
           ++ + S     ++  K   +M        +  ++   N  +   G+ G L+ A+ + E  
Sbjct: 765 LIQSAS----FEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAI 820

Query: 247 DCRHDSSL--WEVLLGACTTFRNA 268
           D R D ++  W  +  A + F  A
Sbjct: 821 D-RGDRTVVSWNSMFKAYSVFGEA 843



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 6/251 (2%)

Query: 2    LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALL 59
            LK  + +HA  I LG+   V V ++ +  YGKCG +D +  VF+ + +  +  VS +++ 
Sbjct: 775  LKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMF 834

Query: 60   QGYCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
            + Y   G+      ++    RE  + DL +F  +  +C     L  G+ +H   I     
Sbjct: 835  KAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTD 894

Query: 116  KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +D+   +  + +Y+K      A  +F  M  R  ++W  MISG+A+ G  +EAL +F  M
Sbjct: 895  QDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAM 954

Query: 176  TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
             + G KPD V+ + ++S C   G ++ G+   A        +  +   N ++D+  + G 
Sbjct: 955  IKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGS 1014

Query: 236  LEEAETLIENA 246
            + EA  + +N 
Sbjct: 1015 IHEARDIFDNT 1025


>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
 gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
          Length = 500

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/313 (40%), Positives = 189/313 (60%), Gaps = 5/313 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  ++++D Y + G VD + ++FDKM +++ +S +A++ G+   G  E  +  FREM+
Sbjct: 139 NSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQ 198

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               + D  +    L AC  L AL  G  VH   + +    +V + ++L+DLY +CGCV+
Sbjct: 199 ISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVE 258

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
           FA Q+F +M  R +++WNS+I GFA NG   E+L  F  M E   KPD V+F G L+ACS
Sbjct: 259 FARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACS 318

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H+GL++ G ++F  M  +YRI P+IEHY C+VDL  RAG LE+A  L+++   + +  + 
Sbjct: 319 HVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVI 378

Query: 256 EVLLGACTTFRNAHV-AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
             LL AC    N  V AE++ K + +L    H +YV+L N+Y A G+W  A K+R  MK 
Sbjct: 379 GSLLAACRNHGNNTVLAEKLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKG 438

Query: 315 SGVKKMPGKSWIE 327
            G+KK PG S IE
Sbjct: 439 LGLKKQPGFSSIE 451



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 96/172 (55%), Gaps = 6/172 (3%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K+ +  + ++D Y + G VD A ++F +MP R+LI+W +MI+GF   G  EEAL  F +M
Sbjct: 138 KNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREM 197

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
              G KPD+V+ I  L+AC+++G +  G   H   M+++++   ++   N ++DL  R G
Sbjct: 198 QISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVS--NSLIDLYCRCG 255

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
            +E A  + +  + R   S   V++G      NAH +    +K+ E   KPD
Sbjct: 256 CVEFARQVFDKMEKRTVVSWNSVIVGFAAN-GNAHESLVYFRKMQEERFKPD 306



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 22/176 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VH  V++     NV V +SL+D+Y +CG V+ + +VFDKM K+  VS ++++ G
Sbjct: 222 LSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVG 281

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACA--GLA--ALRLGKEVHCQY---- 109
           +   G+    +  FR+M+E     D  +F   L AC+  GL    LR  + +   Y    
Sbjct: 282 FAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISP 341

Query: 110 -IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNG 163
            I   GC        LVDLY++ G ++ A ++   MP++ N +   S+++    +G
Sbjct: 342 RIEHYGC--------LVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACRNHG 389



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 14/182 (7%)

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           Q    N ++W S I+   +NGR  EA + F DM   G +P+H++FI +LS C   G    
Sbjct: 30  QSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGC---GDFPS 86

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMV-----DLLGRAGLLEEAETLIENADCRHDSSLWEV 257
           G +    +   Y  K  ++  + MV      +  + G +++A  + +  + + +S  W  
Sbjct: 87  GSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDK-NSVTWNT 145

Query: 258 LLGACTTFRNAHVAERVAKKIMELKPDCHL-SYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
           ++      R+  V    A K+ +  P+  L S+  + N +   G   +A      M+ SG
Sbjct: 146 MIDG--YMRSGQVDN--AAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISG 201

Query: 317 VK 318
           VK
Sbjct: 202 VK 203


>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 760

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 201/338 (59%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSS-SALLQ 60
           L+ GK++H   I      +  + S L+ +Y +C  ++    +FD  + +  ++  ++++ 
Sbjct: 418 LEGGKQIHGVAIRTETSEDSHIVSGLIAVYSECEKMEICECIFDDCINELDIACWNSMIS 477

Query: 61  GYCQTGDFESVIRIFREMEEIDLF-----SFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           G  +       + +FR M +  +      ++ IVL +C+ L +L  G++ H Q ++    
Sbjct: 478 GLRRNTLDTKALMLFRRMHQTSVLLPNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYV 537

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            D  +E+A+ D+Y KCG ++ A Q F  +  +N + WN MI G+A NGRG+EA+ ++ +M
Sbjct: 538 SDSFVETAVTDMYCKCGEIESARQFFDTVSRKNTVIWNEMIHGYAHNGRGDEAVDLYREM 597

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G KPD ++F+ VL+ACSH GL+D G +  +SM +++ I+P+++HY C+VD LGRAG 
Sbjct: 598 ISAGEKPDGITFVSVLTACSHSGLVDTGLEILSSMQRDHGIEPELDHYICIVDCLGRAGR 657

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           LE+AETL E    +  S LWE+LL +C  + +  +A RVA+K+M L P    +YVLL N 
Sbjct: 658 LEDAETLAEATPYKSSSVLWEILLSSCRVYGDVSLARRVAEKLMHLDPQNSAAYVLLSNT 717

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           Y +V +W+DA  ++ LM  + V K PG SWI   + L+
Sbjct: 718 YSSVRQWDDAAALQELMNKNRVHKTPGHSWITYGNDLD 755



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 138/279 (49%), Gaps = 22/279 (7%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCG-LVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G   H   +  GL  N+ V ++L+ MY KCG +VD   RVF+ + + N VS + ++ G  
Sbjct: 143 GMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVISGLA 202

Query: 64  QTGDFESVIRIFREMEE----------IDLFSFGIVLRACAGLAALR---LGKEVHCQYI 110
           +       + +FR M E           ++ S  +    C  L+ +    LGK++H   +
Sbjct: 203 RENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPREGCDSLSEIYGNVLGKQIHSLAL 262

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
           RR    ++ + ++L+++YAK   ++ A  IF +MP  N+++WN MI+GF Q  R ++++ 
Sbjct: 263 RRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQEYRSDKSIE 322

Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
               M + G +P+ V+ I +L AC   G ++ GR+ F ++      +P +  +N M+   
Sbjct: 323 YLKRMRDSGFEPNEVTCISILGACFRSGDVETGRRIFNTIP-----QPSVSAWNAMLSGY 377

Query: 231 GRAGLLEEAET---LIENADCRHDSSLWEVLLGACTTFR 266
                 EEA      ++  + + D +   V+L +C   R
Sbjct: 378 SNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSCARLR 416



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 11/245 (4%)

Query: 24  ESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME- 79
           E + + + G C   G V+   R+F+ + + +  + +A+L GY     +E  I  FR+M+ 
Sbjct: 336 EVTCISILGACFRSGDVETGRRIFNTIPQPSVSAWNAMLSGYSNYEHYEEAINNFRQMQF 395

Query: 80  ---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF 136
              + D  +  ++L +CA L  L  GK++H   IR    +D  I S L+ +Y++C  ++ 
Sbjct: 396 QNLKPDRTTLSVILSSCARLRFLEGGKQIHGVAIRTETSEDSHIVSGLIAVYSECEKMEI 455

Query: 137 AHQIFLQ-MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT-KPDHVSFIGVLSAC 194
              IF   +   ++  WNSMISG  +N    +AL +F  M +     P+  ++  VL +C
Sbjct: 456 CECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSVLLPNETTYAIVLGSC 515

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           S +  +  GR+    + K   +         + D+  + G +E A    +    R ++ +
Sbjct: 516 SRLCSLVHGRQFHGQVVKSGYVSDSFVE-TAVTDMYCKCGEIESARQFFDTVS-RKNTVI 573

Query: 255 WEVLL 259
           W  ++
Sbjct: 574 WNEMI 578



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 36/213 (16%)

Query: 16  GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
           GL  +  + + L+D+Y + G  D + ++FD+M  ++  S +A L   C+ GD E    +F
Sbjct: 22  GLNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEACEVF 81

Query: 76  REMEEIDL-----------------------------------FSFGIVLRACAGLAALR 100
             M E D+                                   F+   VL AC+ +    
Sbjct: 82  DGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFLPSRFTLASVLSACSKVQDGV 141

Query: 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCG-CVDFAHQIFLQMPVRNLITWNSMISGF 159
           +G   H   ++    K++ + +AL+ +YAKCG  VD+  ++F  +   N +++ ++ISG 
Sbjct: 142 IGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVISGL 201

Query: 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
           A+  +  EA+ +F  M E G + D V    +LS
Sbjct: 202 ARENKVLEAVHMFRLMCEKGVQVDCVCLSNILS 234



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 91/201 (45%), Gaps = 31/201 (15%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H+  +  G  G + + +SL+++Y K   ++ +  +F +M + N VS + ++ G+ Q
Sbjct: 254 GKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQ 313

Query: 65  TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
               +  I   + M +             +G        EV C               ++
Sbjct: 314 EYRSDKSIEYLKRMRD-------------SGFEP----NEVTC--------------ISI 342

Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
           +    + G V+   +IF  +P  ++  WN+M+SG++     EEA+  F  M     KPD 
Sbjct: 343 LGACFRSGDVETGRRIFNTIPQPSVSAWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDR 402

Query: 185 VSFIGVLSACSHMGLIDRGRK 205
            +   +LS+C+ +  ++ G++
Sbjct: 403 TTLSVILSSCARLRFLEGGKQ 423



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           +DV   +A +    K G ++ A ++F  MP R++++WN+MIS   + G  E+AL ++  M
Sbjct: 56  RDVYSWNAFLTFRCKVGDLEEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRM 115

Query: 176 TEGGTKPDHVSFIGVLSACS 195
              G  P   +   VLSACS
Sbjct: 116 VGDGFLPSRFTLASVLSACS 135



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 101 LGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF 159
           L   + C    R+G   D  + + L+DLY + G  D+A ++F +M +R++ +WN+ ++  
Sbjct: 9   LASLLRCYRDERTGLNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAFLTFR 68

Query: 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
            + G  EEA  +FD M E     D VS+  ++S     G  ++    +  M
Sbjct: 69  CKVGDLEEACEVFDGMPE----RDVVSWNNMISVLVRKGFEEKALDVYGRM 115


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 207/334 (61%), Gaps = 5/334 (1%)

Query: 5   GKEVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+ +HA+++   +   + VV ++L+ +Y + G  DE  +VF++M ++N VS + L+ G+ 
Sbjct: 194 GRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFA 253

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
             G     +  FR M+         +   +L  CA + AL  GKE+H Q ++     DV 
Sbjct: 254 GQGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVP 313

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+D+YAKCG + +  ++F +M  ++L +WN+M++GF+ NG+  EAL +FD+M   G
Sbjct: 314 LLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYG 373

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            +P+ ++F+ +LS CSH GL   G++ F+++ +++ ++P +EHY C+VD+LGR+G  +EA
Sbjct: 374 IEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEA 433

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
            ++ EN   R   S+W  LL +C  + N  +AE VA+++ E++P+   +YV+L N+Y   
Sbjct: 434 LSVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANA 493

Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           G W D  ++R +M  +G+KK  G SWI+   K++
Sbjct: 494 GMWEDVKRVREMMALTGMKKDAGCSWIQIKHKIH 527



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 135/279 (48%), Gaps = 11/279 (3%)

Query: 2   LKQGKEVHAKVITLG--LCGNVVVESSLVDMYGKCGLVDESHRVF--DKMLKKNSVSSSA 57
           L+ G+++H  ++     +  N  +++ L+ +Y  CG V+E+ RVF  D           A
Sbjct: 86  LEHGRKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVA 145

Query: 58  LLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           +  GY + G     + ++R+M    +    F+F + L+AC+ L    +G+ +H Q ++  
Sbjct: 146 MAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHD 205

Query: 114 -GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
            G  D ++ +AL+ LY + GC D   ++F +MP RN+++WN++I+GFA  GR  E L  F
Sbjct: 206 VGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAF 265

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
             M   G     ++   +L  C+ +  +  G++    + K  R    +   N ++D+  +
Sbjct: 266 RVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKS-RKNADVPLLNSLMDMYAK 324

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271
            G +   E + +    + D + W  +L   +     H A
Sbjct: 325 CGEIGYCEKVFDRMHSK-DLTSWNTMLAGFSINGQIHEA 362



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 13/217 (5%)

Query: 56  SALLQGYCQTGDFESVIRIFREMEEIDLF------SFGIVLRACAGLAALRLGKEVHCQY 109
           ++ L+  C+ G+ +  +R+    +   +       S  + L AC    +L  G+++H   
Sbjct: 37  NSTLKSLCKWGNLDKALRLIESSKPTPIEEEEEEESISLFLHACISRRSLEHGRKLHLHL 96

Query: 110 IRRSG--CKDVIIESALVDLYAKCGCVDFAHQIFL---QMPVRNLITWNSMISGFAQNGR 164
           +R      ++  +++ L+ LY+ CG V+ A ++F    + P    + W +M  G+++NG 
Sbjct: 97  LRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPV-WVAMAIGYSRNGF 155

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
             EAL ++ DM     KP + +F   L ACS +     GR   A + K    +      N
Sbjct: 156 SHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNN 215

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            ++ L    G  +E   + E    R+  S W  L+  
Sbjct: 216 ALLGLYVEIGCFDEVLKVFEEMPQRNVVS-WNTLIAG 251



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GKE+H +++      +V + +SL+DMY KCG +    +VFD+M  K+  S + +L G
Sbjct: 293 LHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAG 352

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           +   G     + +F EM     E +  +F  +L  C+       GK +    ++  G + 
Sbjct: 353 FSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQP 412

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR 147
            +   A LVD+  + G  D A  +   +P+R
Sbjct: 413 SLEHYACLVDILGRSGKFDEALSVAENIPMR 443


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 201/333 (60%), Gaps = 4/333 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           KQ  ++H+ V+  G   +V + S L+  YG+C  +DES RVF ++ K N V  + ++  +
Sbjct: 190 KQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTF 249

Query: 63  CQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            + G +   + +++ +     ++D  +F I+L+AC+ +  ++LG+ VH   ++    +D 
Sbjct: 250 VRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFDQDS 309

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            +ES+++D+Y KCG +  A + F    + +L  WN+M+ G+A +G  +E   +F+ M++ 
Sbjct: 310 FVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQF 369

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G +PD ++++GVLS+C H GL+   R +  SM + + I P +EHY CM+DLLGR GLLE+
Sbjct: 370 GIEPDEITYLGVLSSCCHGGLVKEARHYLDSMFELHGIIPHLEHYACMIDLLGRVGLLED 429

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A+  I++   + D  +W++LL AC    +  +    A+K++E+ P+   +Y+LL N+Y +
Sbjct: 430 AKKTIDHMPIQPDVHIWQILLSACNIHGHVELGRVAARKLLEIHPENESAYILLSNLYAS 489

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
           VG WN   ++R  MK   ++K PG SWI+   K
Sbjct: 490 VGMWNAVGRLRKEMKEKNLRKEPGSSWIQVGRK 522



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 4/207 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK++ A     G    V V ++LV MYGKCG + ++ RVF  M+ ++SVS ++L+  
Sbjct: 88  LNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDACRVFYNMIIRDSVSWNSLISA 147

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G     + +F +M E+ L     +   +L A +     +   ++H   ++     D
Sbjct: 148 CSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSNNTKQVIQIHSLVVKCGFMFD 207

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + S L+  Y +C  +D + ++F ++   NL+  N+MI+ F + G   +AL ++  +  
Sbjct: 208 VSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTFVRAGYYTDALALYQTIWS 267

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGR 204
              K D  +F  +L ACS +  +  GR
Sbjct: 268 LHRKVDSRTFSIILKACSAITDMQLGR 294



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 44/299 (14%)

Query: 25  SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL- 83
           ++++ MY +CG   ++ +VFD++ + + VS +  +       D    + +FR +  + L 
Sbjct: 13  NAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERIG---TASDGHEAVELFRIVLSLGLD 69

Query: 84  ---FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
              ++   VL    G+  L  GK++     +    + V + +ALV +Y KCG +  A ++
Sbjct: 70  VNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDACRV 129

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG-- 198
           F  M +R+ ++WNS+IS  ++NG   +AL +F  M E   +P   +   +L A S+    
Sbjct: 130 FYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSNNT 189

Query: 199 -------------------------LIDRGRKHFASMTKEYRIKPKIE-----HYNCMVD 228
                                    +   GR +  SM +  R+  +I+     H N M+ 
Sbjct: 190 KQVIQIHSLVVKCGFMFDVSMISCLITAYGRCN--SMDESKRVFAEIDKVNLVHLNTMIT 247

Query: 229 LLGRAGLLEEAETLIENADCRH---DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
              RAG   +A  L +     H   DS  + ++L AC+   +  +   V   +++   D
Sbjct: 248 TFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFD 306



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 6/171 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+ VH+ V+  G   +  VESS++D+Y KCG + ++ + F      +  + +A++ G
Sbjct: 290 MQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMG 349

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G ++ V  +F +M     E D  ++  VL +C     ++  +          G   
Sbjct: 350 YAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLSSCCHGGLVKEARHYLDSMFELHGIIP 409

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGE 166
            +   A ++DL  + G ++ A +    MP++ ++  W  ++S    +G  E
Sbjct: 410 HLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPDVHIWQILLSACNIHGHVE 460


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 132/343 (38%), Positives = 199/343 (58%), Gaps = 13/343 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +  G+ +H  V  +G    V V ++L+DMYGKC   +++  +F+ + +K+  S ++++  
Sbjct: 191 INNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISA 250

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYI-----RR 112
           + Q  D +  +R+F +M       D+ +   VL AC+ LAAL  G+E+H   I     + 
Sbjct: 251 HEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKN 310

Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
               DV++ +A++D+YAKCGC+  A  IF  M  +++ +WN MI G+A +G G EAL +F
Sbjct: 311 ENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMF 370

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
             M E   KPD V+F+GVLSACSH G + +GR     M  E+ + P IEHY C++D+LGR
Sbjct: 371 HRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGR 430

Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL---SY 289
           AG L EA  L +      +  LW  LLGAC    NA +   V +KI +L+P  H    SY
Sbjct: 431 AGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQLEPK-HCGSGSY 489

Query: 290 VLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +L+ ++Y  VGR+ +A ++R  MK   VKK PG SWIE    L
Sbjct: 490 ILMSSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWIELKDGL 532



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 129/262 (49%), Gaps = 9/262 (3%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +++H  +  +GL  NV V S+LV+ Y K    +++ +VF+++ +++ V  +A++ GY + 
Sbjct: 94  RKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKI 153

Query: 66  GDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G     + +F+ M E    +  F+   +L     +  +  G+ +H    +      V + 
Sbjct: 154 GHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVS 213

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +AL+D+Y KC   + A  IF  +  ++L +WNS+IS   Q    +  LR+F  M      
Sbjct: 214 NALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVL 273

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLE 237
           PD ++   VL ACSH+  +  GR+    M      K +    +   N ++D+  + G ++
Sbjct: 274 PDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMK 333

Query: 238 EAETLIENADCRHDSSLWEVLL 259
            A+ + +    + D + W +++
Sbjct: 334 NADIIFDLMRNK-DVASWNIMI 354



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 120/242 (49%), Gaps = 10/242 (4%)

Query: 25  SSLVDMYGKCGLVDESHRVF-DKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI-- 81
           +SL++MY +C  ++E+  VF D   ++N  + +A++ G+   G      + ++ M  +  
Sbjct: 14  TSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGV 73

Query: 82  --DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
             D F+F  V+RAC     +R   ++H    +     +V + SALV+ Y K    + A +
Sbjct: 74  MPDKFTFPCVVRACCEFMEVR---KIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEK 130

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F ++P R+++ WN+MI+G+ + G   +A+ +F  M E G      +   +LS  + MG 
Sbjct: 131 VFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGD 190

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           I+ GR     +TK       +   N ++D+ G+    E+A  + E  +   D   W  ++
Sbjct: 191 INNGRAIHGIVTK-MGYSSCVAVSNALIDMYGKCKHTEDALMIFEMIN-EKDLFSWNSII 248

Query: 260 GA 261
            A
Sbjct: 249 SA 250



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPV--RNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           ++L+++Y++C  ++ A  +F + P   RN+  +N++I+GF  NG   +  + +  M   G
Sbjct: 14  TSLINMYSRCNQMEEAVLVF-RDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVG 72

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
             PD  +F  V+ AC     + +       M  E  +       N  + + G     E+A
Sbjct: 73  VMPDKFTFPCVVRACCEFMEVRKIHGCLFKMGLELNVFVGSALVNTYLKVDGT----EDA 128

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
           E + E    R D  LW  ++   T   + + A  V K++ E
Sbjct: 129 EKVFEELPER-DVVLWNAMINGYTKIGHLNKAVVVFKRMGE 168


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/332 (37%), Positives = 194/332 (58%), Gaps = 6/332 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G+ +H   I   L   V+VE++L+DMY KC  V+ S RVF K  K+ +   +A++ G
Sbjct: 341 LKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISG 400

Query: 62  YCQTGDFESVIRIFREM--EEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G     I +F++M  E +D    +   +L A A L  L+  + +H   IR      
Sbjct: 401 CIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSR 460

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRN--LITWNSMISGFAQNGRGEEALRIFDDM 175
           + + + L+D+Y+KCG ++ AH IF  +P ++  +ITW+++I+G+  +G GE A+ +FD M
Sbjct: 461 IEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQM 520

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G KP+ ++F  +L ACSH GL+D G   F  M ++ ++  + +HY C++DLLGRAG 
Sbjct: 521 VQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGR 580

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
           LEEA  LI     R + ++W  LLG+C    N  + E  AK + EL+P    +YVLL N+
Sbjct: 581 LEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANI 640

Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
           Y AVGRW DA  +R +M   G++K P  S IE
Sbjct: 641 YSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIE 672



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 132/247 (53%), Gaps = 5/247 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G+ VHA V    L  ++ V +SL+DMY KCG +DE+  +F +M K++ VS + ++ G
Sbjct: 240 LEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNG 299

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   GD  S + + + M+    + +  +   VL ACA L +L+ G+ +H   IR+    +
Sbjct: 300 YILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESE 359

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           VI+E+AL+D+YAKC  V+ + ++F +   +    WN++ISG   NG   +A+ +F  M  
Sbjct: 360 VIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLM 419

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
               P+  +   +L A + +  + + R     + +   +  +IE    ++D+  + G LE
Sbjct: 420 EAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLS-RIEVATILIDIYSKCGSLE 478

Query: 238 EAETLIE 244
            A  +  
Sbjct: 479 SAHNIFN 485



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 139/266 (52%), Gaps = 10/266 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVV---VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           +   K++HA  ITLGL  +     + SSL   Y  CG    + ++FD++   +  S +A+
Sbjct: 34  IPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAM 93

Query: 59  LQGYCQTGDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
           ++ Y  +G     + +F +M        D +++  V++AC       +G  +H + +   
Sbjct: 94  IRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSG 153

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
              D  ++++L+ +Y  CG ++ A ++F  M  R L++WN+MI+G+ +NG  +EAL +FD
Sbjct: 154 FDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFD 213

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
            M   G +PD  + + VL  CS++  ++ GR+  A + +   +   I  +N ++D+  + 
Sbjct: 214 WMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHA-LVEVKNLGEDISVWNSLLDMYAKC 272

Query: 234 GLLEEAETLIENADCRHDSSLWEVLL 259
           G ++EA+ +    D R D   W  ++
Sbjct: 273 GNMDEAQMIFYEMDKR-DVVSWTTMM 297



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 114/206 (55%), Gaps = 4/206 (1%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           + G  +HA+ +  G   +  V++SL+ MY  CG ++ + RVFD M ++  VS + ++ GY
Sbjct: 140 EMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGY 199

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            + G  +  + +F  M     E D  +   VL  C+ L  L +G+ VH     ++  +D+
Sbjct: 200 FKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDI 259

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + ++L+D+YAKCG +D A  IF +M  R++++W +M++G+  NG    AL +   M   
Sbjct: 260 SVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFE 319

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGR 204
             KP+ V+   VLSAC+ +  +  GR
Sbjct: 320 SVKPNFVTLASVLSACASLYSLKHGR 345


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 196/361 (54%), Gaps = 36/361 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD----------------------- 38
           L+ G+++H + + +    NV V S+L+DMY KC  +                        
Sbjct: 394 LRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISG 453

Query: 39  --------ESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSF 86
                   E+  +F KM  +N  S ++++ GY Q   F   ++ F  M    +     +F
Sbjct: 454 YSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITF 513

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA L +L +GK VH + I+    + + + +AL D+YAK G +D + ++F +MP 
Sbjct: 514 SSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPK 573

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN + W +MI G A+NG  EE++ +F+DM   G  P+  +F+ +L ACSH GL++    H
Sbjct: 574 RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAM-H 632

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           +  M +   I PK +HY CMVD+L RAG L EAE L+   + + +++ W  LL AC  +R
Sbjct: 633 YFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYR 692

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  + ER AK++ EL  D    YVLL N+Y + G+W DA ++R LMK   +KK  G SW+
Sbjct: 693 NKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWV 752

Query: 327 E 327
           +
Sbjct: 753 Q 753



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 138/306 (45%), Gaps = 68/306 (22%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+ V +SL+ +Y + G  D + R+FD+M  ++ VS +ALL  Y + GD E   R+  EM 
Sbjct: 280 NLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMP 339

Query: 80  E----------------------IDLFS-------------FGIVLRACAGLAALRLGKE 104
           E                      + L+S             F  VL ACA L  LR G++
Sbjct: 340 ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK 399

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM--------- 155
           +H Q ++ +   +V + SAL+D+Y KC  +  A  IF  +P +N++ WNS+         
Sbjct: 400 IHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSK 459

Query: 156 ----------------------ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
                                 ISG+AQN +  +AL+ F  M   G  P  ++F  VL A
Sbjct: 460 MVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLA 519

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+ +  ++ G+   A + K   IK  I     + D+  ++G L+ ++ +      R+D +
Sbjct: 520 CASLCSLEMGKMVHAKIIK-LGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVA 578

Query: 254 LWEVLL 259
            W  ++
Sbjct: 579 -WTAMI 583



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 35/159 (22%)

Query: 47  MLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVH 106
           +L KN    ++L+  Y + GD ++  R+F EME                           
Sbjct: 276 LLDKNLGVRNSLITLYLRKGDADAARRMFDEME--------------------------- 308

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
                    +DV+  +AL+D+YA+ G ++ A ++  +MP RN ++W ++++   Q G  +
Sbjct: 309 --------VRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAK 360

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           EA+ ++  M   G +P+   F  VL AC+ +  +  GRK
Sbjct: 361 EAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK 399



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 1/165 (0%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           + V+  + +VD   K G V  A +++ Q P+ ++  + +MI+GF  N   ++AL +F +M
Sbjct: 177 RSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEM 236

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  P+ ++ + V+ AC   G  D          K   +   +   N ++ L  R G 
Sbjct: 237 LSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGD 296

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
            + A  + +  + R D   W  LL       +   A RV  ++ E
Sbjct: 297 ADAARRMFDEMEVR-DVVSWTALLDVYAELGDLEGARRVLDEMPE 340


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/333 (37%), Positives = 193/333 (57%), Gaps = 4/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH + I LGL     V + LV +Y K G ++ + + FD + +KN VS + +     +
Sbjct: 385 GEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVK 444

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             +  S   + RE+E +      F++  +L   A +  +  G+++H   ++     D+ +
Sbjct: 445 DFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSV 504

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+ +Y+KCG  + A Q+F  M   N+ITW S+I+GFA++G   +AL +F +M E G 
Sbjct: 505 NNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGV 564

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KP+ V++I VLSACSH+GLID   KHF SM   + I P++EHY CMVDLLGR+GLL EA 
Sbjct: 565 KPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAI 624

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I +     D+ +W   LG+C   RN  + E  AK I+E +P    +Y+LL N+Y   G
Sbjct: 625 EFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEG 684

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           RW D   IR  MK   + K  G SWIE  ++++
Sbjct: 685 RWEDVAAIRKNMKQKQITKEAGSSWIEVENQVH 717



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 20/235 (8%)

Query: 20  NVVVESSLVDMYGK-CGLVD--ESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFR 76
           +V V   L+DM+ K C L D   + +VFDKM +KN V+ + ++    Q G  +  I +F 
Sbjct: 191 HVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFL 250

Query: 77  EM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131
           EM        D F+   ++  CA +  L LGKE+H   IR     D+ +  +LVD+YAKC
Sbjct: 251 EMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKC 310

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG--EEALRIFDDM-TEGGTKPDHVSFI 188
           G V  A ++F  M   N+++W ++++G+ + G G   EA+R+F +M  +GG  P+  +F 
Sbjct: 311 GLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFS 370

Query: 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC----MVDLLGRAGLLEEA 239
           GVL AC+ +   D     F        IK  +   +C    +V +  ++G +E A
Sbjct: 371 GVLKACASLPDFD-----FGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESA 420



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 129/274 (47%), Gaps = 24/274 (8%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALLQGY 62
           GK +H K+ T  L  + ++ +SL+ +Y K      +  +F  M   K++ VS S+++  +
Sbjct: 71  GKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCF 130

Query: 63  CQTGDFESVIRIFREMEEID-----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               +    + +F ++   D      + F  V+RAC      + G  +   ++ ++G  D
Sbjct: 131 ANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLF-GFVLKTGYFD 189

Query: 118 --VIIESALVDLYAK-CGCVDF--AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
             V +   L+D++ K C   D   A ++F +M  +N++TW  MI+  AQ G  +EA+ +F
Sbjct: 190 SHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLF 249

Query: 173 DDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC----MV 227
            +M    G  PD  +  G++S C+ +  +  G++        + I+  +    C    +V
Sbjct: 250 LEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKE-----LHSWVIRSGLVLDLCVGCSLV 304

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           D+  + GL++EA  + +     H+   W  L+  
Sbjct: 305 DMYAKCGLVQEARKVFDGMR-EHNVMSWTALVNG 337



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 3/124 (2%)

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
           L +  ++L+ C       LGK +H +    +   D ++ ++L+ LY+K      A  IF 
Sbjct: 52  LITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQ 111

Query: 143 QM--PVRNLITWNSMISGFAQNGRGEEALRIFDD-MTEGGTKPDHVSFIGVLSACSHMGL 199
            M    R++++++S+IS FA N    +A+ +FD  + + G  P+   F  V+ AC   G 
Sbjct: 112 SMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGF 171

Query: 200 IDRG 203
              G
Sbjct: 172 FKTG 175


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 200/345 (57%), Gaps = 14/345 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNV---VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
           LK GKE+H  V+  G  G V    + +S++DMY  C  V  + ++F+ +  K+ VS ++L
Sbjct: 241 LKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSL 300

Query: 59  LQGYCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
           + GY + GD    + +F  M       +E+ + S   VL AC  ++ALRLG  V    ++
Sbjct: 301 ISGYEKCGDAFQALELFGRMVVVGAVPDEVTVIS---VLAACNQISALRLGATVQSYVVK 357

Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
           R    +V++ +AL+ +YA CG +  A ++F +MP +NL     M++GF  +GRG EA+ I
Sbjct: 358 RGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISI 417

Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
           F +M   G  PD   F  VLSACSH GL+D G++ F  MT++Y ++P+  HY+C+VDLLG
Sbjct: 418 FYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLG 477

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVL 291
           RAG L+EA  +IEN   + +  +W  LL AC   RN  +A   A+K+ EL PD    YV 
Sbjct: 478 RAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVC 537

Query: 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
           L N+Y A  RW D   +R L+    ++K P  S++E N K+ H  
Sbjct: 538 LSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELN-KMVHQF 581



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 119/210 (56%), Gaps = 11/210 (5%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           + G++VHA V+  GL  +V V +S++ MY K G V+ +  VFD+ML ++  S + ++ G+
Sbjct: 141 EMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGF 200

Query: 63  CQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG---- 114
            + G+      +F +M       D  +   +L AC  +  L++GKE+H  Y+ R+G    
Sbjct: 201 VKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIH-GYVVRNGESGR 259

Query: 115 -CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
            C   ++ S ++D+Y  C  V  A ++F  + V+++++WNS+ISG+ + G   +AL +F 
Sbjct: 260 VCNGFLMNS-IIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFG 318

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
            M   G  PD V+ I VL+AC+ +  +  G
Sbjct: 319 RMVVVGAVPDEVTVISVLAACNQISALRLG 348



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 108/198 (54%), Gaps = 5/198 (2%)

Query: 2   LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L Q  ++HA V T G L  N  + + L   Y  CG +  +  +FD+++ KNS   +++++
Sbjct: 38  LTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIR 97

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY         + ++ +M    ++ D F++  VL+AC  L    +G++VH   +     +
Sbjct: 98  GYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEE 157

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV + ++++ +Y K G V+ A  +F +M VR+L +WN+M+SGF +NG    A  +F DM 
Sbjct: 158 DVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMR 217

Query: 177 EGGTKPDHVSFIGVLSAC 194
             G   D  + + +LSAC
Sbjct: 218 RDGFVGDRTTLLALLSAC 235



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC--KDVIIESALVDLYAKCGCVDFAH 138
            D    G +L++     +L    ++H  ++   G   ++  + + L   YA CG + +A 
Sbjct: 20  FDSLQCGTLLQSLTNSKSLTQALQLH-AHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQ 78

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            IF Q+ ++N   WNSMI G+A N     AL ++  M   G KPD+ ++  VL AC  + 
Sbjct: 79  HIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLL 138

Query: 199 LIDRGRK 205
           L + GRK
Sbjct: 139 LREMGRK 145


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 207/352 (58%), Gaps = 23/352 (6%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVS----SSALLQ 60
           GKE+H  V+  GL  +V V ++L+ MYG+C  V+ +  VFDKM++++ VS    ++ALL 
Sbjct: 178 GKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLD 237

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK---- 116
            Y + G      ++F  + +  + S+  ++  C     L  G ++   +IR         
Sbjct: 238 MYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKL---FIRMQEENIFPN 294

Query: 117 ------------DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
                       D I+ +ALVD+YAKCG ++ A ++F++   R++  WN++I+GFA +G 
Sbjct: 295 EITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGY 354

Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
           GEEAL IF +M   G KP+ ++FIG+L ACSH GL+  G+K F  M   + + P+IEHY 
Sbjct: 355 GEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYG 414

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
           CMVDLLGRAGLL+EA  +I++   + ++ +W  L+ AC   +N  + E  A +++E++P+
Sbjct: 415 CMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPE 474

Query: 285 CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
                VL+ N+Y A  RW+DA  +R  MK  G+KK PG S IE N  ++  L
Sbjct: 475 NCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFL 526



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 127/275 (46%), Gaps = 36/275 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+Q K++HA +I      +  ++  L D         + + V     K+N   ++  L  
Sbjct: 91  LEQTKQIHAHIIKTHF--HHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNA--LNV 146

Query: 62  YCQTGDFESVIRIFREME-EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           Y Q           R+M+ E+D F    VL+AC  ++  +LGKE+H   +++   +DV +
Sbjct: 147 YAQ----------LRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFV 196

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITW----NSMISGFAQNGRGEEALRIFDDMT 176
            +AL+ +Y +C CV++A  +F +M  R++++W     +++  +A+ G    A ++F+ +T
Sbjct: 197 GNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLT 256

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN------------ 224
           +       VS+  +++ C     ++ G K F  M +E     +I   N            
Sbjct: 257 QKTV----VSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKERVEVDCILNT 312

Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            +VD+  + G +  A  L   A  R D  +W  ++
Sbjct: 313 ALVDMYAKCGDINAAGRLFIEAISR-DICMWNAII 346


>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
 gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
          Length = 496

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 192/318 (60%), Gaps = 4/318 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           +VV  +++V    + GLVD +  VFD M   + VS +AL+ G+ + G  +  I  FR M 
Sbjct: 137 SVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAML 196

Query: 79  ---EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               E D  +   V+ ACA + AL LG  VH   +R+   ++V + ++L+D+YA+CG V 
Sbjct: 197 LDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVK 256

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A Q+F  +  R +++WNSMI G A NG   EA+ +F++M   G KPD V+  GVL+ACS
Sbjct: 257 LAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACS 316

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H GL + G +++  MT EY I  ++EHY C+VDLLGRAG L+EA  ++E    R +  + 
Sbjct: 317 HAGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVL 376

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LL  C    +  +AE++ + + EL P    +YVLL N+Y AVG+W+ A K+R+LMK  
Sbjct: 377 GALLAGCRMHGDLDMAEQLMQHLFELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKAR 436

Query: 316 GVKKMPGKSWIEANSKLN 333
           GVKK PG S +E +  ++
Sbjct: 437 GVKKRPGHSIVEIDGDVH 454



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 6/168 (3%)

Query: 81  IDLFSFGIVLRACAGLAALRLGKEVH---CQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
           + LF   ++L  C  LA   L   +     Q       + V+  + +V    + G VD A
Sbjct: 100 LKLFPSHLLLSTC--LARFYLASRLPHLALQLFDTMPVRSVVTYNTMVSGLMRNGLVDAA 157

Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
            ++F  MP  + ++W ++I GF +NGR +EA+  F  M     +PD+V+ I V+SAC+ +
Sbjct: 158 FEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIAVVSACAEV 217

Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
           G +  G      +     ++  +   N ++D+  R G ++ A  +  +
Sbjct: 218 GALGLG-MWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHS 264



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 25/195 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G  VH  V+  GL  NV V +SL+DMY +CG V  + +VF  + K+  VS ++++ G
Sbjct: 220 LGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVG 279

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRAC--AGLA--ALRLGKEVHCQY---- 109
               G     I +F EM     + D  +   VL AC  AGL    LR    +  +Y    
Sbjct: 280 LAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIAA 339

Query: 110 -IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNG---R 164
            +   GC        +VDL  + G +D A  +   MP+R N +   ++++G   +G    
Sbjct: 340 RMEHYGC--------VVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRMHGDLDM 391

Query: 165 GEEALRIFDDMTEGG 179
            E+ ++   ++  GG
Sbjct: 392 AEQLMQHLFELDPGG 406


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/338 (38%), Positives = 202/338 (59%), Gaps = 10/338 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSALLQ 60
           L +GK+VHA V+ LG   +  + +SL+  Y  CG ++ + +VFD+M + +N VS + ++ 
Sbjct: 101 LFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMID 160

Query: 61  GYCQTGDFESVIRIFREM---EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
            Y + GD++ V+ +F EM    E D ++   V+RAC GL +L LG  VH   +++     
Sbjct: 161 SYAKVGDYDIVLIMFCEMMKVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNV 220

Query: 117 --DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             DV++ + LVD+Y KCG ++ A Q+F  M  R++ +WNS+I GFA +G+ + AL  F  
Sbjct: 221 VCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVR 280

Query: 175 MTE-GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           M +     P+ ++F+GVLSAC+H G++D G  +F  MTKEY ++P + HY C+VDL  RA
Sbjct: 281 MVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARA 340

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGAC-TTFRNAHVAERVAKKIMELKPD-CHLSYVL 291
           G ++EA  ++     + D+ +W  LL AC     +  ++E +AK+I E     C  +YVL
Sbjct: 341 GHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHASVELSEEMAKQIFESNGSVCGGAYVL 400

Query: 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           L  VY +  RWND   +R LM   GV K PG S IE N
Sbjct: 401 LSKVYASASRWNDVGLLRKLMNDKGVSKKPGCSLIEIN 438



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 12/221 (5%)

Query: 51  NSVSSSALLQGYCQ-TGDFESVIRIFREM---EEIDLF----SFGIVLRACAGLAALRLG 102
           NS + + L+Q Y + T   +  I +++ +   +E +LF    ++  VL+ACA L +L  G
Sbjct: 45  NSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACAYLFSLFEG 104

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM-PVRNLITWNSMISGFAQ 161
           K+VH   ++     D  I ++L+  YA CG ++ A ++F +M   RN+++WN MI  +A+
Sbjct: 105 KQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAK 164

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK--EYRIKPK 219
            G  +  L +F +M +   +PD  +   V+ AC  +G +  G    A + K  +  +   
Sbjct: 165 VGDYDIVLIMFCEMMK-VYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCD 223

Query: 220 IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +    C+VD+  + G LE A+ + E    R  SS   ++LG
Sbjct: 224 VLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILG 264


>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14170-like [Vitis vinifera]
          Length = 455

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 130/328 (39%), Positives = 199/328 (60%), Gaps = 5/328 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G  VH   + +G+  ++ V S+LV MY   G V ++  +FD+M ++++V  +A+L G
Sbjct: 126 VKLGVSVHGLCVEMGMEKSLFVASALVFMYVTFGKVLDARVLFDEMPERDAVLWTAMLAG 185

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIV----LRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  +    + +FR+M    +   G+V    L AC  L  L+ GK VH    RR     
Sbjct: 186 YAQHEEPMLALSVFRQMVSAGVALDGVVMISLLLACGQLGWLKHGKSVHGWITRRCLALG 245

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + + +ALV  Y KC  + +++ +F +MP R++I+W+S+I G+  +G  + AL +FD M  
Sbjct: 246 LNLGNALVYFYVKCAALGYSYNLFDKMPERDVISWSSIILGYGLSGNVDIALDLFDRMRV 305

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G KP+ V+F+G LSAC+H G+++R   +F  M KEY + P+++HY CMVD LGRAG+LE
Sbjct: 306 AGVKPNDVTFLGALSACTHTGMVERAHTYF-EMMKEYGVAPELKHYACMVDCLGRAGMLE 364

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +AE  IE      D ++   LLG C    NA V ERVAKK+M L+P+   +YV+L N+Y 
Sbjct: 365 DAERFIEEMPVEADGAVLGALLGGCRVHGNAEVGERVAKKLMGLEPEKASNYVMLANIYA 424

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
             GR+ DA K+R LMK   + K+PG S+
Sbjct: 425 GAGRFEDAEKVRQLMKQRKLSKVPGCSF 452



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 5/212 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCG-LVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           + +HA+++   L  NV++ S L+ MY + G L   S  VF  M  +N  S + ++  + +
Sbjct: 28  RHLHARLLRTSLYDNVILSSKLLLMYSQLGKLSPHSLSVFLHMPHRNIYSWNIIIGEFSR 87

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +      I +F +M    +  D+F+  +VLRACA   +++LG  VH   +     K + +
Sbjct: 88  SHLPHKSIDLFLQMRHFNQPPDVFTLPLVLRACAASGSVKLGVSVHGLCVEMGMEKSLFV 147

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALV +Y   G V  A  +F +MP R+ + W +M++G+AQ+     AL +F  M   G 
Sbjct: 148 ASALVFMYVTFGKVLDARVLFDEMPERDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGV 207

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
             D V  I +L AC  +G +  G+     +T+
Sbjct: 208 ALDGVVMISLLLACGQLGWLKHGKSVHGWITR 239


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/333 (37%), Positives = 201/333 (60%), Gaps = 2/333 (0%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G++VH  + + G   NVVV+++LV MYGKCG   E+ +VFD M  +N +S ++++  
Sbjct: 249 LEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAA 308

Query: 62  YCQTGDFESVIRIFREME-EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           Y Q G+ +  + +F+ M+ E    SF   L ACA L AL  G+E+H + +  +      +
Sbjct: 309 YAQHGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVE-ANLASPQM 367

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           E++L+ +YA+CG +D A ++F +M  R+  + N+MI+ F Q+GR ++ALRI+  M + G 
Sbjct: 368 ETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGI 427

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             D ++F+ VL ACSH  L+   R    S+  ++ + P +EHY CMVD+LGR+G L +AE
Sbjct: 428 PADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAE 487

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            L+E    + D+  W  LL  C    +    ER A+K+ EL P   L YV L N+Y A  
Sbjct: 488 ELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAAK 547

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           R++DA ++R  M+  GV +    S+IE +++L+
Sbjct: 548 RFDDARRVRKEMEERGVTRPVAVSYIEIDNELH 580



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 149/282 (52%), Gaps = 11/282 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G+ +H +++   +  + V++ SL++MY KC  + E+ +VF+ M  +N  S +A++  
Sbjct: 147 LADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISA 206

Query: 62  YCQTGDFESVIRIFREMEEIDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           Y Q G+    + +F  M +++      ++F  +L A  GL  L  G++VH     R    
Sbjct: 207 YVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDT 266

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +V++++ALV +Y KCG    A ++F  M  RN+I+W SMI+ +AQ+G  +EAL +F  M 
Sbjct: 267 NVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMD 326

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
               +P  VSF   L+AC+ +G +D GR+    + +     P++E    ++ +  R G L
Sbjct: 327 ---VEPSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQME--TSLLSMYARCGSL 381

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           ++A  +      R D+     ++ A T       A R+ +K+
Sbjct: 382 DDARRVFNRMKTR-DAFSCNAMIAAFTQHGRKKQALRIYRKM 422



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 155/290 (53%), Gaps = 14/290 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G+ +H  +I  G   ++ +E++L+ MY KCG +D++ RVF+ M  K+  + S+++  
Sbjct: 46  LEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAA 105

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G  E  + ++R M     E ++ +F   L  CA +A L  G+ +H + +     +D
Sbjct: 106 YARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQD 165

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            +++ +L+++Y KC  +  A ++F  M  RN+ ++ +MIS + Q G   EAL +F  M++
Sbjct: 166 DVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSK 225

Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRK---HFASMTKEYRIKPKIEHYNCMVDLLGRA 233
               +P+  +F  +L A   +G +++GRK   H AS   +  +  +    N +V + G+ 
Sbjct: 226 VEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQ----NALVTMYGKC 281

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283
           G   EA  + ++   R+  S W  ++ A     N   A  + K+ M+++P
Sbjct: 282 GSPVEARKVFDSMTARNVIS-WTSMIAAYAQHGNPQEALNLFKR-MDVEP 329



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 4/137 (2%)

Query: 72  IRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127
           + ++ EMEE     D F    ++ AC  L AL  G+ +H   I      D+ +E+AL+ +
Sbjct: 15  LELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQM 74

Query: 128 YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187
           YAKCG +D A ++F  M +++L  W+S+I+ +A+ GRGE A+ ++  M   G +P+ V+F
Sbjct: 75  YAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTF 134

Query: 188 IGVLSACSHMGLIDRGR 204
              L  C+ +  +  GR
Sbjct: 135 ACALGGCASVAGLADGR 151


>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 471

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/322 (38%), Positives = 195/322 (60%), Gaps = 8/322 (2%)

Query: 18  CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFRE 77
           C +V+  +++++ Y   G ++   RVFD+ML++N  S + L++GY Q G    V+  F+ 
Sbjct: 115 CRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKR 174

Query: 78  M-EEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK--DVIIESALVDLYAK 130
           M +E  +F    +  +VL ACA L A   GK VH +Y    G    DV +++AL+D+Y K
Sbjct: 175 MVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVH-KYGENLGYNKVDVNVKNALIDMYGK 233

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
           CG ++ A ++F  +  R+LI+WN+MI+G A +G G EAL +F +M   G  PD V+F+GV
Sbjct: 234 CGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTFVGV 293

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
           L AC HMGL++ G  +F SM  ++ I P+IEH  C+VDLL RAG L +A   I     + 
Sbjct: 294 LCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFINKMPVKA 353

Query: 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310
           D+ +W  LLGA   ++     E   K++++L+P    ++V+L N+Y   GR++DA +++ 
Sbjct: 354 DAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSNIYGDAGRFDDAARLKV 413

Query: 311 LMKYSGVKKMPGKSWIEANSKL 332
            M+ +G KK  G SWIE +  L
Sbjct: 414 AMRDTGFKKEAGISWIETDDGL 435



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 11/229 (4%)

Query: 34  CGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRAC 93
           C +V  +++VF +M++KN V  ++++ GY    D  S  R F    E D     IVL   
Sbjct: 39  CSMV-SANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERD-----IVLWNT 92

Query: 94  AGLAALRLGKEVHCQYI-RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
                + +G  +  + +  +  C+DV+  + +++ YA  G ++   ++F +M  RN+ +W
Sbjct: 93  MVAGYIEMGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSW 152

Query: 153 NSMISGFAQNGRGEEALRIFDDMT-EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASM 210
           N +I G+AQNGR  E L  F  M  EG   P+  +   VLSAC+ +G  D G++ H    
Sbjct: 153 NGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGE 212

Query: 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
              Y  K  +   N ++D+ G+ G +E A  + +    R D   W  ++
Sbjct: 213 NLGYN-KVDVNVKNALIDMYGKCGAIEIAMEVFKGIK-RRDLISWNTMI 259



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 114/252 (45%), Gaps = 37/252 (14%)

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
           +F FG +   C+ ++A     +V C+ +     K+V+I +++++ Y     +  A + F 
Sbjct: 32  MFLFGTL---CSMVSA----NKVFCEMVE----KNVVIWTSMINGYLLNKDLVSARRYFD 80

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP--DHVSFIGVLSACSHMGLI 200
             P R+++ WN+M++G+ + G   EA  +FD M      P  D +S+  VL   +++G +
Sbjct: 81  LSPERDIVLWNTMVAGYIEMGNMMEARSLFDQM------PCRDVMSWNTVLEGYANIGDM 134

Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA----ETLIENADCRHDSSLWE 256
           +   + F  M     ++  +  +N ++    + G + E     + +++      + +   
Sbjct: 135 EACERVFDEM-----LERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLT 189

Query: 257 VLLGACTTFRNAHVAERVAKKIMEL---KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           ++L AC         +RV K    L   K D ++   L+D +Y   G    A ++     
Sbjct: 190 LVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALID-MYGKCGAIEIAMEV----- 243

Query: 314 YSGVKKMPGKSW 325
           + G+K+    SW
Sbjct: 244 FKGIKRRDLISW 255


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/343 (39%), Positives = 188/343 (54%), Gaps = 16/343 (4%)

Query: 2   LKQGKEVHAKVITL-------GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK--NS 52
           L  GKE+H   I         G     +V + L+DMY KC  VD +  +FD +  K  + 
Sbjct: 381 LMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDV 440

Query: 53  VSSSALLQGYCQTGDFESVIRIFREMEEID------LFSFGIVLRACAGLAALRLGKEVH 106
           V+ + ++ GY Q GD    + +  EM E D       F+    L ACA LAALR+GK++H
Sbjct: 441 VTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIH 500

Query: 107 CQYIR-RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
              +R +     + + + L+D+YAKCG +  A  +F  M  +N +TW S+++G+  +G G
Sbjct: 501 AYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYG 560

Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225
           EEAL IFD+M   G K D V+ + VL ACSH G+ID+G ++F  M   + + P  EHY C
Sbjct: 561 EEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYAC 620

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285
           +VDLLGRAG L  A  LIE         +W   L  C       + E  A+KI EL  + 
Sbjct: 621 LVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNH 680

Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
             SY LL N+Y   GRW D  +IR+LM++ GVKK PG SW+E 
Sbjct: 681 DGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEG 723



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 151/306 (49%), Gaps = 50/306 (16%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++H   +T  +  N+ V + LVDMY KCG++DE++ VF  M  K+ VS +A++ GY Q
Sbjct: 248 GKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQ 307

Query: 65  TGDFESVIRIFREMEE------------------------------IDLFSFGI------ 88
            G FE  +R+F +M+E                                + S GI      
Sbjct: 308 IGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVT 367

Query: 89  ---VLRACAGLAALRLGKEVHCQYI------RRSGCKDV-IIESALVDLYAKCGCVDFAH 138
              VL  CA + AL  GKE+HC  I      R++G  D  ++ + L+D+YAKC  VD A 
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTAR 427

Query: 139 QIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG--TKPDHVSFIGVLSAC 194
            +F  L    R+++TW  MI G++Q+G   +AL +  +M E    T+P+  +    L AC
Sbjct: 428 AMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVAC 487

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           + +  +  G++  A   +  +    +   NC++D+  + G + +A  + +N   +++ + 
Sbjct: 488 ASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTW 547

Query: 255 WEVLLG 260
             ++ G
Sbjct: 548 TSLMTG 553



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 159/330 (48%), Gaps = 51/330 (15%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+  HA  +  G   NV V ++LV MY +C  + ++ +VFD+M   + VS +++++ Y +
Sbjct: 146 GESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAK 205

Query: 65  TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
            G  +  + +F  M        D  +   VL  CA L    LGK++HC  +     +++ 
Sbjct: 206 LGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMF 265

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE-- 177
           + + LVD+YAKCG +D A+ +F  M V+++++WN+M++G++Q GR E+A+R+F+ M E  
Sbjct: 266 VGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEK 325

Query: 178 ---------------------------------GGTKPDHVSFIGVLSACSHMGLIDRGR 204
                                             G KP+ V+ I VLS C+ +G +  G+
Sbjct: 326 IKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGK 385

Query: 205 KHFASMTKEYRIKPKIEHY-------NCMVDLLGRAGLLEEAETLIENADCRH-DSSLWE 256
           +      K Y I  +   +       N ++D+  +   ++ A  + ++   +  D   W 
Sbjct: 386 EIHCYAIK-YPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWT 444

Query: 257 VLLGACTTFRNAHVAERVAKKIMELKPDCH 286
           V++G  +   +A+ A  +  ++ E   DC 
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFE--EDCQ 472



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 149/289 (51%), Gaps = 12/289 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS--VSSSALL 59
           + Q K +H K+++ G+   + + S L+  Y   G +  +  +  +    ++     ++L+
Sbjct: 41  ISQVKLIHQKLLSFGIL-TLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 60  QGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
           + Y   G     + +F  M  +    D ++F  V +AC  ++++R G+  H   +     
Sbjct: 100 RSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFI 159

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
            +V + +ALV +Y++C  +  A ++F +M V ++++WNS+I  +A+ G+ + AL +F  M
Sbjct: 160 SNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRM 219

Query: 176 T-EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           T E G +PD+++ + VL  C+ +G    G++ H  ++T E  +   +   NC+VD+  + 
Sbjct: 220 TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSE--MIQNMFVGNCLVDMYAKC 277

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
           G+++EA T+  N   + D   W  ++   +       A R+ +K+ E K
Sbjct: 278 GMMDEANTVFSNMSVK-DVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEK 325


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/332 (37%), Positives = 203/332 (61%), Gaps = 5/332 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           KE+H  V+  GL  ++++++++V++YG+  LVD +  VF+ +  K+ VS ++++      
Sbjct: 473 KEIHGYVLKGGL-ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHN 531

Query: 66  GDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G     + +F  + E     DL +   VL A A L++L+ GKE+H   IR+    + +I 
Sbjct: 532 GLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIA 591

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++LVD+YA+CG ++ A  IF  +  R+LI W SMI+    +G G++A+ +F  MT+    
Sbjct: 592 NSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVL 651

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PDH++F+ +L ACSH GL+  G++HF  M  EY+++P  EHY C+VDLL R+  LEEA  
Sbjct: 652 PDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYH 711

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
            + N      + +W  LLGAC    N  + E  AKK+++L  +   +YVL+ N + A GR
Sbjct: 712 FVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGR 771

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           WND  ++R++MK + +KK PG SWIE  +K++
Sbjct: 772 WNDVEEVRSIMKGNKLKKKPGCSWIEVENKIH 803



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 127/234 (54%), Gaps = 7/234 (2%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDK--MLKKNSVSSSALLQGY 62
           G E+H   +  G  G V V ++L+ MY KCG +  +  +FD   M K + VS ++++  +
Sbjct: 167 GCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAH 226

Query: 63  CQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
              G+    + +FR M+E+    + ++F   L+AC G   +++G+ +H   ++ +   DV
Sbjct: 227 VGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDV 286

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +AL+ +YA CG ++ A ++F  M  ++ ++WN+++SG  QN    +A+  F DM + 
Sbjct: 287 YVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDS 346

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
           G KPD VS + +++A      +  G +  A   K + I   +   N ++D+ G+
Sbjct: 347 GQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIK-HGIDSNMHIGNSLIDMYGK 399



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 131/267 (49%), Gaps = 9/267 (3%)

Query: 2   LKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L QG+++HA  + T     +V +++  V MYGKCG   ++ +VFDKM ++   + +A++ 
Sbjct: 62  LPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIG 121

Query: 61  GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
                G +   I +++EM      +D F+F  VL+AC      RLG E+H   ++     
Sbjct: 122 ACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGG 181

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQ--MPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            V + +AL+ +YAKCG +  A  +F    M   + ++WNS+IS     G   EAL +F  
Sbjct: 182 FVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRR 241

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M E G + +  +F+  L AC     I  GR   A + K       +   N ++ +    G
Sbjct: 242 MQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFT-DVYVSNALIAMYANCG 300

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
            +E+AE + ++   + D   W  LL  
Sbjct: 301 QMEDAERVFKSMLFK-DCVSWNTLLSG 326



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 133/271 (49%), Gaps = 19/271 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +K G+ +HA ++      +V V ++L+ MY  CG ++++ RVF  ML K+ VS + LL G
Sbjct: 267 IKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSG 326

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q   +   I  F++M++     D  S   ++ A    A L  G EVH   I+     +
Sbjct: 327 MVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSN 386

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + I ++L+D+Y KC CV +    F  MP ++LI+W ++I+G+AQN    +AL +   +  
Sbjct: 387 MHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQL 446

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE---YRIK---PKIEHYNCMVDLLG 231
                D +    +L ACS  GL          + KE   Y +K     I   N +V++ G
Sbjct: 447 EKMDVDPMMIGSILLACS--GLKSE------KLIKEIHGYVLKGGLADILIQNAIVNVYG 498

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
              L++ A  + E+ + + D   W  ++  C
Sbjct: 499 ELALVDYARHVFESINSK-DIVSWTSMITCC 528



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 85  SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCGCVDFAHQIFLQ 143
           ++   L  CA   AL  G+++H  +++     D V +++  V +Y KCG    A ++F +
Sbjct: 48  AYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDK 107

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           M  R + TWN+MI      GR  EA+ ++ +M   G   D  +F  VL AC
Sbjct: 108 MSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKAC 158



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 7/152 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK+GKE+H  +I  G     ++ +SLVDMY +CG ++ +  +F+ + +++ +  ++++  
Sbjct: 569 LKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINA 628

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
               G  +  I +F +M +     D  +F  +L AC+    +  GK+ H + ++     +
Sbjct: 629 NGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQ-HFEIMKNEYKLE 687

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR 147
              E  + LVDL A+   ++ A+     MP+ 
Sbjct: 688 PWPEHYACLVDLLARSNSLEEAYHFVRNMPIE 719


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 207/361 (57%), Gaps = 35/361 (9%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH  +   G   +VV E++L+DMY K   + ++H+VFD+M +++ +S ++LL GY +
Sbjct: 128 GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYAR 187

Query: 65  TGD-------------------------------FESVIRIFREME----EIDLFSFGIV 89
            G                                +   +  FREM+    E D  S   V
Sbjct: 188 LGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISV 247

Query: 90  LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
           L +CA L +L LGK +H    RR   K   + +AL+++Y+KCG +  A Q+F QM  +++
Sbjct: 248 LPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDV 307

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           I+W++MISG+A +G    A+  F++M     KP+ ++F+G+LSACSH+G+   G ++F  
Sbjct: 308 ISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDM 367

Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
           M ++Y+I+PKIEHY C++D+L RAG LE A  + +    + DS +W  LL +C T  N  
Sbjct: 368 MRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLD 427

Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
           VA      ++EL+P+   +YVLL N+Y  +G+W D  ++R +++   +KK PG S IE N
Sbjct: 428 VALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVN 487

Query: 330 S 330
           +
Sbjct: 488 N 488



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 170/347 (48%), Gaps = 43/347 (12%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K+++A +I  GL  +  + + +VD   K   +D + R+F+++   N    +++++ Y   
Sbjct: 27  KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86

Query: 66  GDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             +  VIRI++++     E  D F+F  + ++CA L +  LGK+VH    +      V+ 
Sbjct: 87  SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVT 146

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE-------------- 166
           E+AL+D+Y K   +  AH++F +M  R++I+WNS++SG+A+ G+ +              
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTI 206

Query: 167 -----------------EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFA 208
                            EA+  F +M   G +PD +S I VL +C+ +G ++ G+  H  
Sbjct: 207 VSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLY 266

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
           +  + +  +  +   N ++++  + G++ +A  L    + + D   W  ++       NA
Sbjct: 267 AERRGFLKQTGV--CNALIEMYSKCGVISQAIQLFGQMEGK-DVISWSTMISGYAYHGNA 323

Query: 269 HVAERVAKKIM--ELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
           H A     ++   ++KP+  ++++ L +    VG W +  +   +M+
Sbjct: 324 HGAIETFNEMQRAKVKPNG-ITFLGLLSACSHVGMWQEGLRYFDMMR 369



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 8/183 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ GK +H      G      V ++L++MY KCG++ ++ ++F +M  K+ +S S ++ G
Sbjct: 257 LELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISG 316

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G+    I  F EM+   +   GI    +L AC+ +   + G   +   +R+    +
Sbjct: 317 YAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLR-YFDMMRQDYQIE 375

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDD 174
             IE    L+D+ A+ G ++ A +I   MP++ +   W S++S     G  + AL   D 
Sbjct: 376 PKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDH 435

Query: 175 MTE 177
           + E
Sbjct: 436 LVE 438


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 192/332 (57%), Gaps = 4/332 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK++HA+++ LGL    +V ++L+DMY KCG++D +   F     K  VS +A++ G  Q
Sbjct: 360 GKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQ 419

Query: 65  TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G  E  +++F  M       D  +F   ++A + LA + LG+++H   IR      V  
Sbjct: 420 NGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFS 479

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SAL+D+Y KCGC+D A Q F +MP RN I+WN++IS +A  G+ + A+++F+ M   G 
Sbjct: 480 GSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGF 539

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           KPD V+F+ VLSACSH GL +   K+F  M  EY I P  EHY+C++D LGR G  ++ +
Sbjct: 540 KPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQ 599

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
            ++       D  +W  +L +C T  N  +A   A+K+  +       YV+L N++   G
Sbjct: 600 EMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAG 659

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           +W DA  ++ +M+  G++K  G SW+E   K+
Sbjct: 660 KWEDAAGVKKIMRDRGLRKETGYSWVEVKHKV 691



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 151/286 (52%), Gaps = 9/286 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G++VH  ++      NV V +SL+D Y KC  +DE  ++F +M+++++VS + ++ GY  
Sbjct: 260 GRQVHG-LVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAW 318

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
                 V+R+FREM+ +        +  +L     +  + +GK++H Q +      + ++
Sbjct: 319 NRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLV 378

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            +AL+D+Y+KCG +D A   F+    +  ++W +MI+G  QNG+ EEAL++F  M   G 
Sbjct: 379 GNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGL 438

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            PD  +F   + A S++ +I  GR+  + + +   +   +   + ++D+  + G L+EA 
Sbjct: 439 SPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMS-SVFSGSALLDMYTKCGCLDEAL 497

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
              +    R+  S W  ++ A   +  A  A ++ + ++    KPD
Sbjct: 498 QTFDEMPERNSIS-WNAVISAYAHYGQAKNAIKMFEGMLCYGFKPD 542



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 134/261 (51%), Gaps = 8/261 (3%)

Query: 7   EVHAKVITLGLC-GNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
            +H   + LGL   NVVV ++L+D Y K GL+  + RVF +M  ++SV+ +A++ G  + 
Sbjct: 160 SLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKE 219

Query: 66  GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           G     + +F  M    L    F+F  VL    G+  L LG++VH   + R+   +V + 
Sbjct: 220 GSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVH-GLVARATSSNVFVN 278

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           ++L+D Y+KC C+D   ++F +M  R+ +++N MI+G+A N      LR+F +M      
Sbjct: 279 NSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFD 338

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
              + +  +LS    +  I  G++  A +     +  +    N ++D+  + G+L+ A+T
Sbjct: 339 RQALPYASLLSVAGSVPHIGIGKQIHAQLVL-LGLSSEDLVGNALIDMYSKCGMLDAAKT 397

Query: 242 LIENADCRHDSSLWEVLLGAC 262
              N + +   S W  ++  C
Sbjct: 398 NFINKNDKTGVS-WTAMITGC 417



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 124/278 (44%), Gaps = 17/278 (6%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALLQGYC-----QTGDFESVI 72
           N    + ++  Y + G +  +H +F       +++V+ + ++  +      +  D  S+ 
Sbjct: 65  NAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLF 124

Query: 73  R-IFREMEEIDLFSFGIVLR---ACAGLAALRLGKEVHCQYIRRSGC--KDVIIESALVD 126
           R + RE    D  +   VL    A  G AA  +   +H  +  + G    +V++ + L+D
Sbjct: 125 RDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLH-PFALKLGLLHSNVVVCNTLLD 183

Query: 127 LYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186
            Y K G +  A ++F +MP R+ +T+N+M+ G ++ G   EAL +F  M   G      +
Sbjct: 184 AYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFT 243

Query: 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
           F  VL+  + +G +  GR+    + +       +   N ++D   +   L+E + L    
Sbjct: 244 FSTVLTVATGVGDLCLGRQVHGLVARA--TSSNVFVNNSLLDFYSKCDCLDEMKKLFHEM 301

Query: 247 DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
             R D+  + V++      R A +  R+ +++  L  D
Sbjct: 302 IER-DNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFD 338


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/333 (37%), Positives = 200/333 (60%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA  +      +V V S+L+DMY +CG++D +  VFDK+  KN VS +AL+ G+ +
Sbjct: 171 GRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFAR 230

Query: 65  TGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            GD E+ +  F EM     E   F++  V  + A L AL  GK VH   I+         
Sbjct: 231 KGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFA 290

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + L+D+YAK G +  A ++F ++  ++L+TWN+M++ FAQ G G+EA+  F++M + G 
Sbjct: 291 GNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGI 350

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
             + V+F+ +L+ACSH GL+  G+++F  M KEY ++P+I+H+  +V LLGRAGLL  A 
Sbjct: 351 YLNQVTFLCILTACSHGGLVKEGKRYF-EMMKEYDLEPEIDHFVTVVALLGRAGLLNFAL 409

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             I        +++W  LL AC   +NA V +  A  + EL PD     VLL N+Y + G
Sbjct: 410 VFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTG 469

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +W+ A ++R +MK +GVKK P  SW+E  + ++
Sbjct: 470 QWDAAARVRRIMKTTGVKKEPACSWVEMENSVH 502



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 151/268 (56%), Gaps = 6/268 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  ++VHA + +    G+  +++SL+ +Y KCG V E+ +VFD+M +K+ VS ++L+ G
Sbjct: 67  LEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAG 126

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q    E  I +   M     + + F+F  +L+A    A   +G+++H   ++    +D
Sbjct: 127 YAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHED 186

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YA+CG +D A  +F ++  +N ++WN++ISGFA+ G GE AL  F +M  
Sbjct: 187 VYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLR 246

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +  H ++  V S+ + +G +++G+   A M K  R K      N ++D+  ++G + 
Sbjct: 247 NGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKS-RQKMTAFAGNTLLDMYAKSGSMI 305

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTF 265
           +A  + +  D + D   W  +L A   +
Sbjct: 306 DARKVFDRVDDK-DLVTWNTMLTAFAQY 332



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 89/175 (50%), Gaps = 4/175 (2%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +   + ACA    L   ++VH          D  ++++L+ LY KCG V  A ++F +M 
Sbjct: 54  YHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMR 113

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            +++++W S+I+G+AQN   EEA+ +   M +G  KP+  +F  +L A         GR+
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQ 173

Query: 206 -HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
            H  ++  ++     +   + ++D+  R G+++ A  + +  D ++  S W  L+
Sbjct: 174 IHALAVKCDWHEDVYVG--SALLDMYARCGMMDMATAVFDKLDSKNGVS-WNALI 225


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 204/366 (55%), Gaps = 37/366 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H  VI  GL  +  V S+L+DMYGKC    E   VF++M + +  + +AL+ G  +
Sbjct: 229 GIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSR 288

Query: 65  TGDFESVIRIFRE------------------------MEEIDLF-------------SFG 87
            G  ++ + +F++                        ME ++LF             +  
Sbjct: 289 NGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIP 348

Query: 88  IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
            +L AC  +AAL  GK  HC  +R     DV + SAL+D+YAKCG +  +   F  MP R
Sbjct: 349 CLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNR 408

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           NL++WNS+++G+A +G+  EA+ IF+ M   G KPDHVSF  VLSAC+  GL + G  +F
Sbjct: 409 NLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYF 468

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRN 267
            SM++ + ++ ++EHY+CMV LLGR+G LEEA  +I+      DS +W  LL +C     
Sbjct: 469 DSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNR 528

Query: 268 AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
             + E  AK++ EL+P    +Y+LL N+Y +   W +   +R +M+  G+KK PG SWIE
Sbjct: 529 VDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIE 588

Query: 328 ANSKLN 333
             +K++
Sbjct: 589 IKNKVH 594



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 72/275 (26%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ- 60
           L+ GK++H   +  GL  + VV SSL+ MY +   + ++  VFDK+ +   V+SSAL+  
Sbjct: 90  LQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISR 149

Query: 61  ----------------------------------GYCQTGDFESVIRIFREME----EID 82
                                             G+ ++G +   + +F+ M     + D
Sbjct: 150 FARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPD 209

Query: 83  LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC--------- 133
             S   VL A   L    +G ++HC  I++    D  + SAL+D+Y KC C         
Sbjct: 210 GTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFN 269

Query: 134 ----------------------VDFAHQIFLQMPVR--NLITWNSMISGFAQNGRGEEAL 169
                                 VD A ++F Q      N+++W SMI+  +QNG+  EAL
Sbjct: 270 EMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEAL 329

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
            +F +M   G KP+ V+   +L AC ++  +  G+
Sbjct: 330 ELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGK 364



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 107/255 (41%), Gaps = 48/255 (18%)

Query: 50  KNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLGKEV 105
           K  +S    +Q + +   F  VIR+F  M    +         V++ CA L+AL+ GK++
Sbjct: 37  KTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQM 96

Query: 106 HC-------------------QYIRRSGCKD------------VIIESALVDLYAKCGCV 134
           HC                    Y++    KD            V+  SAL+  +A+ G V
Sbjct: 97  HCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRV 156

Query: 135 DFAHQIFLQ---MPVR-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
               ++F Q   + V  NL++WN MISGF ++G   +A+ +F +M   G KPD  S   V
Sbjct: 157 KETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSV 216

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
           L A   + +   G +    + K+  + P     + ++D+ G+     E   +    D   
Sbjct: 217 LPAVGDLDMPLMGIQIHCYVIKQ-GLGPDKFVVSALIDMYGKCACASEMSGVFNEMD--- 272

Query: 251 DSSLWEVLLGACTTF 265
                EV +GAC   
Sbjct: 273 -----EVDVGACNAL 282


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/329 (37%), Positives = 200/329 (60%), Gaps = 5/329 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           + Q K+VHA  +      ++ V SSL+DMY K   + E+ RVFD +  ++ VS +A+L G
Sbjct: 132 IHQVKQVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSG 191

Query: 62  YCQTGDFESVIRIFR----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q G  E  + +FR    E  + +  +F  +L A +GL+++  GK+VH   +RR     
Sbjct: 192 YTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFF 251

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           + ++++L+D+Y+KCG + ++ ++F  MP R++++WN+M+ G+ ++G   E +++F  M +
Sbjct: 252 MALQNSLIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCD 311

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
              KPD V+ + VLS  SH GL+D G   F  + KE       EHY C++DLLGR+G L+
Sbjct: 312 E-VKPDSVTLLAVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQ 370

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           +A  LIE    +   ++W  LLGAC    N HV E VA+K+++++P+   +YV+L N+Y 
Sbjct: 371 KALNLIEKMPFQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYA 430

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           A G W D F++R LM    V K PG+SW+
Sbjct: 431 AAGMWKDVFRVRKLMLKKTVIKEPGRSWM 459



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 147/285 (51%), Gaps = 21/285 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G++VHA+++  G    + + + LV MY +CG ++++  V D M ++N VS +A++ G
Sbjct: 51  LREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVSWTAMISG 110

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
           Y Q    +    +F  M           LRA      +   K+VH   ++ +    + + 
Sbjct: 111 YSQNERPDQAWELFIMM-----------LRA-----GIHQVKQVHAFAVKTNFELHMFVG 154

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           S+L+D+YAK   +  A ++F  +P R+++++ +++SG+ Q G  EEAL +F  +   G +
Sbjct: 155 SSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQ 214

Query: 182 PDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            + V+F  +L+A S +  +D G++ H   + +E      ++  N ++D+  + G L  + 
Sbjct: 215 CNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQ--NSLIDMYSKCGKLLYSR 272

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM-ELKPD 284
            + ++   R   S W  +L        AH   ++ + +  E+KPD
Sbjct: 273 RVFDSMPERSVVS-WNAMLMGYGRHGLAHEVVQLFRSMCDEVKPD 316



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%)

Query: 93  CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
           C    ALR G++VH + +       + + + LV +YA+CG ++ A  +   MP RN+++W
Sbjct: 45  CVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVSW 104

Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGG 179
            +MISG++QN R ++A  +F  M   G
Sbjct: 105 TAMISGYSQNERPDQAWELFIMMLRAG 131


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 201/338 (59%), Gaps = 6/338 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           LK G+E+H  +I  G      +  +++DMY KCG ++ ++ +F ++ K++ VS ++++  
Sbjct: 453 LKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITR 512

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q+ +  + I IFR+M       D  S    L ACA L +   GK +H   I+ S   D
Sbjct: 513 CAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALD 572

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V  ES L+D+YAKCG +  A  +F  M  +N+++WNS+I+ +  +G+ +++L +F +M E
Sbjct: 573 VYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVE 632

Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G +PD ++F+ ++S C H+G +D G + F SMT++Y I+P+ EHY C+VDL GRAG L
Sbjct: 633 KSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRL 692

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EA   +++     D+ +W  LLGA    +N  +A+  + ++M+L P     YVL+ N +
Sbjct: 693 SEAYETVKSMPFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAH 752

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNH 334
              G W    K+R+LMK   V+K+PG SWIE N K+ H
Sbjct: 753 ANTGEWESVTKVRSLMKEREVQKIPGYSWIEIN-KITH 789



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G ++H  V+  GL     +++SL+ MY KCG  D++ ++F  M + ++V+ + ++ GY Q
Sbjct: 254 GVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQ 313

Query: 65  TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           +G  E  +  F EM       D  +F  +L + +    L   +++HC  +R S   D+ +
Sbjct: 314 SGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFL 373

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SAL+D Y KC  V  A +IF Q    +++ + +MISG+  NG   +AL +F  + +   
Sbjct: 374 TSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKI 433

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNC-MVDLLGRAGLLEE 238
            P+ ++ + +L     +  +  GR+ H   + K +  +  I    C ++D+  + G +  
Sbjct: 434 SPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNI---GCAVIDMYAKCGRMNL 490

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
           A  +      + D   W  ++  C    N   A  + +++
Sbjct: 491 AYEIFGRLS-KRDIVSWNSMITRCAQSDNPSAAIDIFRQM 529



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 136/267 (50%), Gaps = 12/267 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  +++H  ++   +  ++ + S+L+D Y KC  V  + ++F +    + V  +A++ G
Sbjct: 352 LEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISG 411

Query: 62  YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           Y   G     + +FR +        EI L S   +L    GL AL+LG+E+H   I++  
Sbjct: 412 YLHNGLNIDALEMFRWLVKVKISPNEITLVS---ILPVIGGLLALKLGRELHGFIIKKGF 468

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
                I  A++D+YAKCG ++ A++IF ++  R++++WNSMI+  AQ+     A+ IF  
Sbjct: 469 DNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQ 528

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G   D VS    LSAC+++     G+     M K + +   +   + ++D+  + G
Sbjct: 529 MGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIK-HSLALDVYSESTLIDMYAKCG 587

Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
            L+ A  + +    ++  S W  ++ A
Sbjct: 588 NLKAAMNVFDTMKEKNIVS-WNSIIAA 613



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 150/342 (43%), Gaps = 45/342 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSV--SSSALL 59
           L+QGK+VHA VI   + G+   +  ++ MY  CG      ++F ++  + S     ++++
Sbjct: 47  LRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSII 106

Query: 60  QGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG- 114
             + + G     +  + +M       D+ +F  +++AC  L   + G E     +   G 
Sbjct: 107 SSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFK-GIEFLSDTVSSLGM 165

Query: 115 -CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
            C +  + S+L+  Y + G +D A ++F ++  ++ + WN M++G+A+ G  +  ++ F 
Sbjct: 166 DCNE-FVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFS 224

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK---------------------------- 205
            M      P+ V+F  VLS C+   LID G +                            
Sbjct: 225 LMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCG 284

Query: 206 HFASMTKEYRIKPKIE--HYNCMVDLLGRAGLLEEAETLIE---NADCRHDSSLWEVLLG 260
            F    K +R+  + +   +NCM+    ++GL+EE+        ++    D+  +  LL 
Sbjct: 285 RFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLP 344

Query: 261 ACTTFRNAHVAERVAKKIM--ELKPDCHLSYVLLDNVYRAVG 300
           + + F N     ++   IM   +  D  L+  L+D  ++  G
Sbjct: 345 SVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRG 386



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 75  FREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
           +R +EE       ++L+ C+ L  LR GK+VH   I      D   +  ++ +YA CG  
Sbjct: 23  YRFLEETLPRRLSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSF 82

Query: 135 DFAHQIFLQMPVR--NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
               ++F ++  R  ++  WNS+IS F + G   +AL  +  M   G  PD  +F  ++ 
Sbjct: 83  SNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVK 142

Query: 193 AC 194
           AC
Sbjct: 143 AC 144


>gi|359492768|ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Vitis vinifera]
          Length = 665

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/329 (37%), Positives = 196/329 (59%), Gaps = 4/329 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G+++ A  I +G   N +V S+ +D++ KC  +++S RVF+++ + +SV  +A++  
Sbjct: 284 LEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISS 343

Query: 62  YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G  E+ +++F    RE      F+  IVL A + L  +  G ++H   ++     D
Sbjct: 344 YAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESD 403

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           VI+ S+LV++YAK G +D A + F ++  R+LI+WN+MI G A NGR  +AL IF ++  
Sbjct: 404 VIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLI 463

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           GG  PD ++  GVL AC+  GL+D G   F+SM KEY + P IEHY C+VD++ R G L+
Sbjct: 464 GGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLK 523

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA  ++E         +W  LL AC  + +    ERVA+++MEL+P   L Y++L   Y 
Sbjct: 524 EAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQAYE 583

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
             GRW    ++R  MK  GV+K+ G SWI
Sbjct: 584 MRGRWESLVRVRRAMKEKGVRKVIGCSWI 612



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 130/241 (53%), Gaps = 6/241 (2%)

Query: 4   QGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           +GK++HA +I  G+   NVVV +SL+ MYGK G+VD +  VF  M + +  S ++L+   
Sbjct: 184 RGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDITSWNSLIWSC 243

Query: 63  CQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            ++G     +R F  M  +    D F+   V+  C+ L  L  G+++    IR     + 
Sbjct: 244 GKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNS 303

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           I+ SA +DL++KC  ++ + ++F ++   + +  N+MIS +A +G GE AL++F      
Sbjct: 304 IVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRE 363

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             +P   +   VLSA S +  +D+G +   S+  +  ++  +   + +V++  + GL++ 
Sbjct: 364 NLRPTEFTLSIVLSAVSILLPVDQGSQ-IHSLVVKSGLESDVIVASSLVEMYAKFGLIDS 422

Query: 239 A 239
           A
Sbjct: 423 A 423



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 128/276 (46%), Gaps = 34/276 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   K VHA++I +G   +  + +  +D+Y + G  ++S RVF+ ++ KN +S +  L+ 
Sbjct: 53  LDYAKFVHAQLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKA 112

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLA----ALRL---------------- 101
           + + G+ E    +F EM + D+ S+  ++           A R                 
Sbjct: 113 FVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTY 172

Query: 102 ------------GKEVHCQYIRRS-GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
                       GK++H   IR      +V++ ++L+ +Y K G VD+A  +F+ M   +
Sbjct: 173 STLLSFVSSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELD 232

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           + +WNS+I    ++G    ALR F  M   G  PD  +   V++ CS++  +++G + FA
Sbjct: 233 ITSWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFA 292

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
              +   +   I   +  +DL  +   LE++  + E
Sbjct: 293 LCIRVGFLSNSIVS-SASIDLFSKCNRLEDSVRVFE 327



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 88/171 (51%), Gaps = 6/171 (3%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K++I  +  +  + + G ++ A  +F +MP R++++WN+MISG+   G  ++A R F +M
Sbjct: 101 KNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEM 160

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            + G +P   ++  +LS  S      RG++  ASM +       +   N ++ + G+ G+
Sbjct: 161 QKAGIRPSGFTYSTLLSFVSSAC---RGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGV 217

Query: 236 LEEAETLIENADCRHDSSLWEVLLGAC--TTFRNAHVAERVAKKIMELKPD 284
           ++ A  +    +   D + W  L+ +C  + ++N  + + V  + +   PD
Sbjct: 218 VDYAFGVFITME-ELDITSWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPD 267



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 5/145 (3%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           ++  C  L +L   K VH Q I+        + +  +DLY++ G  + + ++F  +  +N
Sbjct: 43  LIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKN 102

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208
           LI+WN  +  F + G  E A  +FD+M     K D VS+  ++S     GL D   + F+
Sbjct: 103 LISWNIFLKAFVRFGELERARDVFDEM----PKRDVVSWNTMISGYVSFGLFDDAFRFFS 158

Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRA 233
            M K   I+P    Y+ ++  +  A
Sbjct: 159 EMQKA-GIRPSGFTYSTLLSFVSSA 182


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 205/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+++H  V  LG+  ++ +ES+L+DMY KCG ++++ ++F+   + + VS + +L G
Sbjct: 273 IREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVG 332

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  I++F +M +    ID      +L       +L LGK++H   I++S   +
Sbjct: 333 LAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSN 392

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + + L+++Y+KCG +D + +IF  MP RN ++WNSMI+ FA++G G  AL+++++M  
Sbjct: 393 YFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRL 452

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P  V+F+ +L AC+H+GL+++G     SM K+Y I P++EHY C+VD++GRAGLL 
Sbjct: 453 EGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLN 512

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE    +    +W+ LLGAC+   N+ + +  A ++    P+    Y+LL N+Y 
Sbjct: 513 EAKKFIERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYS 572

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G+W +  +    MK  GV K  G SWIE   +++
Sbjct: 573 SEGKWKERARTIKKMKDMGVTKETGISWIEIEKQIH 608



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 144/274 (52%), Gaps = 16/274 (5%)

Query: 2   LKQGKEVHAKVI-TLG-LCGN--------VVVESSLVDMYGKCGLVDESHRVFDKMLKKN 51
           L  G  +HA +I   G L GN        +VV +SL+ MY +CG + ++ +VFD M  K+
Sbjct: 60  LHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKD 119

Query: 52  SVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSF-----GIVLRACAGLAALRLGKEVH 106
           ++S ++ + G    GD E   R+F+++ E  ++ F       VL AC       + K +H
Sbjct: 120 TISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMIH 179

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
                    +++ + +AL+  Y +CGC     ++F +M  +N++TW ++ISG +Q    E
Sbjct: 180 SLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYE 239

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226
           E+L++F  M +G   P+ ++++  L ACS +  I  GR+    +  +  +   +   + +
Sbjct: 240 ESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQ-IHGLVWKLGVHFDLCIESAL 298

Query: 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           +D+  + G LE+A  + E+A+   + S+  +L+G
Sbjct: 299 MDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVG 332


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 194/337 (57%), Gaps = 6/337 (1%)

Query: 3   KQGKEVHAKVITLGL--CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           ++G +VHA +   G     N ++  +LVDMY KCG +  + +VF+++ +KN++  + ++ 
Sbjct: 444 REGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVV 503

Query: 61  GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+ Q G     + +FR         D      ++   A  A +  G++VHC  ++     
Sbjct: 504 GHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGT 563

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV   +++VD+Y KCG  D A ++F ++P RN+++W +MI+G  ++G G EA+ +F++M 
Sbjct: 564 DVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMR 623

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
            GG +PD V+++ +LSACSH GL+D  R++F+ + ++  ++PK EHY CMVDLLGRAG L
Sbjct: 624 AGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGEL 683

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
            EA  LI          +W+ LL AC   ++  V       ++ +  D  ++YV L NV+
Sbjct: 684 REARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLSNVF 743

Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
              G W +  K+R  M+  G+KK  G SW+E   +++
Sbjct: 744 AEAGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKEVH 780



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 139/293 (47%), Gaps = 21/293 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++H  +  LG   + ++ ++L+DMY KCG +D +  VF  M  +N VS +AL+ G
Sbjct: 233 LRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVG 292

Query: 62  YCQTGDFESVIRIFREMEEI-----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           + Q GD    +R+  EM        + ++    L+AC     +  G  +H   +R    +
Sbjct: 293 FLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEE 352

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDDM 175
             ++ S+LV LY+K G +  A ++F    + R L TWN+MISG+A  G G +AL +F +M
Sbjct: 353 HYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGRDALLVFREM 412

Query: 176 T------EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVD 228
                  E   +PD  +F  +L AC  +G    G +  A+M    +           +VD
Sbjct: 413 RRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVD 472

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281
           +  + G L  A  + E  + R ++  W       TT    H  E    + +EL
Sbjct: 473 MYVKCGRLPVAMQVFERLE-RKNAIQW-------TTVVVGHAQEGQVMEALEL 517



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 1/107 (0%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           +LRA A  ++LR G ++H    +     D ++ + L+D+YAKCG +D A ++F  M  RN
Sbjct: 223 LLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRN 282

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDHVSFIGVLSAC 194
           +++W +++ GF Q+G     LR+  +M       P+  +    L AC
Sbjct: 283 VVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKAC 329



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++QG++VH   +      +V   +S+VDMY KCGL DE+ R+F ++  +N VS + ++ G
Sbjct: 546 VEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMING 605

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             + G     + +F EM     E D  ++  +L AC+  A L      +   IRR     
Sbjct: 606 LGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSH-AGLVDECRRYFSCIRRDRTVR 664

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVRNLI-TWNSMIS 157
              E  + +VDL  + G +  A  +   MP+   +  W +++S
Sbjct: 665 PKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLS 707


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 209/362 (57%), Gaps = 40/362 (11%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCG------------------------------ 35
           ++VH   + +G+  NV++ ++L+D YGKCG                              
Sbjct: 122 RQVHGVAVIVGMEWNVILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRA 181

Query: 36  -LVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVL 90
             +DE+ RVF  M  KN+VS +ALL G+ + G  +    +F++M E        +F  V+
Sbjct: 182 CRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVI 241

Query: 91  RACAGLAALRLGKEVHCQYIR--RSG-CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
            ACA  A +  GK+VH Q IR  +SG   +V + +AL+D+YAKCG +  A  +F   P+R
Sbjct: 242 DACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMR 301

Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
           +++TWN++I+GFAQNG GEE+L +F  M E   +P+HV+F+GVLS C+H GL + G +  
Sbjct: 302 DVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLV 361

Query: 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTF 265
             M ++Y +KPK EHY  ++DLLGR   L EA +LIE      ++  ++W  +LGAC   
Sbjct: 362 DLMERQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVH 421

Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
            N  +A + A+K+ EL+P+    YV+L N+Y A G+W  A +IR +MK   ++K P  S 
Sbjct: 422 GNLDLARKAAEKLFELEPENTGRYVMLANIYAASGKWGGAKRIRNVMKERCLEKEPACSR 481

Query: 326 IE 327
           IE
Sbjct: 482 IE 483



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 171/356 (48%), Gaps = 47/356 (13%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           R+K    VH  +I   L  +  + + L+D Y KCG  + +H+ F  +  K + S + L+ 
Sbjct: 25  RVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLIS 84

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            Y +TG F+    +F +M + ++ S+  ++        L+  ++VH   +      +VI+
Sbjct: 85  FYSKTGFFDEAHNLFDKMPQRNVVSYNSLISG-----NLQWLRQVHGVAVIVGMEWNVIL 139

Query: 121 ESALVDLYAKCG------------------------------C-VDFAHQIFLQMPVRNL 149
            +AL+D Y KCG                              C +D A ++F  MPV+N 
Sbjct: 140 NNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNT 199

Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
           ++W ++++GF +NG  +EA  +F  M E G +P   +F+ V+ AC+   LI RG++    
Sbjct: 200 VSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQ 259

Query: 210 MTKEYRIKPKIEHY--NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF-R 266
           + +  +       Y  N ++D+  + G ++ AE L E A  R D   W  L+   T F +
Sbjct: 260 IIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMR-DVVTWNTLI---TGFAQ 315

Query: 267 NAHVAERVA--KKIMELKPDC-HLSYVLLDNVYRAVGRWNDAFKIRTLM-KYSGVK 318
           N H  E +A  ++++E K +  H++++ + +     G  N+  ++  LM +  GVK
Sbjct: 316 NGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVK 371



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 51/92 (55%)

Query: 86  FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
           +  ++  C     ++L   VH   I+ +   D  + + L+D Y+KCGC + AH+ F  +P
Sbjct: 13  YSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLP 72

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
            +   +WN++IS +++ G  +EA  +FD M +
Sbjct: 73  NKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQ 104


>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 211/382 (55%), Gaps = 52/382 (13%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-----VDESHRVFDKMLKKNSVSSS 56
            ++G+++H +V+  G   N+ V ++L+++Y   G      +  +  +FD+M   N V  +
Sbjct: 141 FREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWN 200

Query: 57  ALLQGYCQTGDFESVIRIFREMEEIDLFSFGIV--------------------------- 89
           +LL GY + GDF+   ++F EM E ++ ++ I+                           
Sbjct: 201 SLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVEL 260

Query: 90  --------LRACAGLAALRLGKEVHCQYIRRSGCKD-----VIIESALVDLYAKCGCVDF 136
                   L ACA L  L LGK +H  Y+ R+         V + +AL+ +YA CG +D 
Sbjct: 261 DQVALVAALSACAELGDLTLGKWIH-GYVERTWRSRHLPVLVSLNNALIHMYASCGVMDL 319

Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG---TKPDHVSFIGVLSA 193
           A+++F ++P RN ++W+S+I+GFA+ G G EA+RIF  M   G    +PD ++FIG L+A
Sbjct: 320 AYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTA 379

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           CSH GLI  G + F SM K + + P+IEHY CMVDLL RAGLL EA +LIE+   + +++
Sbjct: 380 CSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNA 439

Query: 254 LWEVLLGACTTFRNAHVAERVAKKI-MELKPDCHLS--YVLLDNVYRAVGRWNDAFKIRT 310
           +W  LL  C   +N  +   VAK +  E+ P+   +  ++LL NVY A GRW D   +R 
Sbjct: 440 VWGALLSGCRLHKNDEIVSHVAKHLSFEIHPNNQAAGYFMLLANVYAADGRWQDTATVRR 499

Query: 311 LMKYSGVKKMPGKSWIEANSKL 332
            M   GVKK  G+SWIE N  L
Sbjct: 500 NMHDIGVKKPSGRSWIEINGVL 521



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 136/297 (45%), Gaps = 43/297 (14%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++HA+++  G      + + L+ +Y   G +  + +VF+ +   ++   + +++G+ ++ 
Sbjct: 45  KIHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSK 104

Query: 67  DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             +  I +F+ M     E + F++  +L AC      R G+++H + +      ++ + +
Sbjct: 105 TSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRT 164

Query: 123 ALVDLYAKCG-CVDF----AHQIFLQMPVRNLITWNS----------------------- 154
            L++LYA  G   DF    A  +F +MP  N++ WNS                       
Sbjct: 165 NLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPE 224

Query: 155 --------MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
                   M++GFAQNG+ + AL +FD M   G + D V+ +  LSAC+ +G +  G+  
Sbjct: 225 RNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWI 284

Query: 207 FASMTKEYR---IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
              + + +R   +   +   N ++ +    G+++ A  + E    R+  S   ++ G
Sbjct: 285 HGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITG 341



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 89  VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
           VL++C     L    ++H Q +     +   I + L+ LY   G +  A ++F  +   +
Sbjct: 33  VLKSCVSFRNL---AKIHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPS 89

Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
              WN +I G  ++   ++++ +F  MT  G + +  ++  +LSAC    L   G +
Sbjct: 90  TTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQ 146


>gi|242057857|ref|XP_002458074.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
 gi|241930049|gb|EES03194.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
          Length = 963

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/332 (37%), Positives = 203/332 (61%), Gaps = 9/332 (2%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQ 60
           L+ GK+ HA V+  G+  + VV+++L+  Y K G ++    +F  M  ++++VS ++++ 
Sbjct: 565 LELGKQFHAAVLKHGVMDDNVVDNALISCYAKSGDMNSCEHLFSNMSGRRDAVSWNSMIS 624

Query: 61  GYCQTGDFES----VIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           GY   G  +     V  +    + +D  +F I+L ACA +AAL  G E+H   IR     
Sbjct: 625 GYIYNGYLQEAMDCVWLMLHSGQIMDCCTFSIILNACASVAALERGMEMHAFGIRSHLES 684

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           DV++ESALVD+Y+KCG VD+A ++F  M  RN  +WNSMISG+A++G G +AL  F++M 
Sbjct: 685 DVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKALETFEEML 744

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
                PDHV+F+ VLSACSH GL++RG ++F  M  ++ I P+IEHY+C++DLLGRAG +
Sbjct: 745 RSRESPDHVTFVSVLSACSHAGLVERGLEYF-EMMPDHGILPQIEHYSCVIDLLGRAGKI 803

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNA---HVAERVAKKIMELKPDCHLSYVLLD 293
           ++ +  I+    + ++ +W  +L AC   ++     +     + ++E++P   ++YVL  
Sbjct: 804 DKIKEYIQRMPMKPNALIWRTVLVACRQSKDGSKIELGREALRVLLEIEPQNPVNYVLAS 863

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325
           N + A G W D  K R  M+ + VKK  G+SW
Sbjct: 864 NFHAATGMWEDTAKARAGMRQATVKKEAGRSW 895



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 133/264 (50%), Gaps = 8/264 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  G++VH   +  GL  +  V + LV MYG+CG + +  +VF+ M   + VS ++++  
Sbjct: 463 LSAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDCWKVFNSMADHDEVSWNSMMGV 522

Query: 62  YCQT-GDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
              +       + +F  M    L     +F  +L A + L+ L LGK+ H   ++     
Sbjct: 523 MASSQAPISETVEVFNNMMRGGLIPNKVTFVNLLAALSPLSVLELGKQFHAAVLKHGVMD 582

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           D ++++AL+  YAK G ++    +F  M   R+ ++WNSMISG+  NG  +EA+     M
Sbjct: 583 DNVVDNALISCYAKSGDMNSCEHLFSNMSGRRDAVSWNSMISGYIYNGYLQEAMDCVWLM 642

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G   D  +F  +L+AC+ +  ++RG +  A   + + ++  +   + +VD+  + G 
Sbjct: 643 LHSGQIMDCCTFSIILNACASVAALERGMEMHAFGIRSH-LESDVVVESALVDMYSKCGR 701

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           ++ A  L  +   R++ S W  ++
Sbjct: 702 VDYASKLFNSMTQRNEFS-WNSMI 724



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 122/262 (46%), Gaps = 36/262 (13%)

Query: 2   LKQGKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
           L++GKE H  ++  GL    + V + LV+MY KCG +D                      
Sbjct: 394 LRKGKEAHGHMLRTGLTDLKIAVSNGLVNMYAKCGAID---------------------- 431

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRAC--AGLAALRLGKEVHCQYIRRSGCKDV 118
                    S  +IF+ ME  D  S+  ++ A    GL  L  G++VHC  ++     D 
Sbjct: 432 ---------SASKIFQLMEATDRISWNTIISALDQNGLKLLSAGQQVHCDAVKWGLDLDT 482

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG-EEALRIFDDMTE 177
            + + LV +Y +CG +    ++F  M   + ++WNSM+   A +     E + +F++M  
Sbjct: 483 SVSNVLVKMYGECGAMSDCWKVFNSMADHDEVSWNSMMGVMASSQAPISETVEVFNNMMR 542

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
           GG  P+ V+F+ +L+A S + +++ G++  A++ K   +   +   N ++    ++G + 
Sbjct: 543 GGLIPNKVTFVNLLAALSPLSVLELGKQFHAAVLKHGVMDDNVVD-NALISCYAKSGDMN 601

Query: 238 EAETLIENADCRHDSSLWEVLL 259
             E L  N   R D+  W  ++
Sbjct: 602 SCEHLFSNMSGRRDAVSWNSMI 623



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 15/205 (7%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           + +H ++I  GL  ++ + + LV+ Y K   +  + RVFD+M ++N+VS + LL GY   
Sbjct: 80  ENLHVELIKRGLNHDLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQ 139

Query: 66  GDFESVIRIFREM-EEIDL------FSFGIVLRACAGLAALRLG--KEVHCQYIRRSGCK 116
           G  E   R+FR M  E++       F+FG +LRAC      RLG   +VH    +     
Sbjct: 140 GITEEAFRVFRAMLREVEPGCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTEYAS 199

Query: 117 DVIIESALVDLYAKC--GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
           +  + +AL+ +Y  C  G    A ++F   P+R+LITWN+++S +A+ G       +F D
Sbjct: 200 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVVSTFTLFMD 259

Query: 175 MTEGGT----KPDHVSFIGVLSACS 195
           M    +    +P   +F  +++A S
Sbjct: 260 MQREDSRIQLRPTEHTFGSLITATS 284



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 10/166 (6%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           +V   V+  G   ++ V S+LV  + + GL+DE+  +F  + +KN+V+ + L+ G  +  
Sbjct: 295 QVFVSVLKSGCSSDLYVGSALVSAFARHGLIDEAKDIFLSLKEKNAVTLNGLIVGLVKQH 354

Query: 67  DFESVIRIF---REMEEIDLFSFGIVLRACAGLA----ALRLGKEVHCQYIRRSGCKD-- 117
             E  ++IF   R    ++  ++ ++L A A  +     LR GKE H  ++ R+G  D  
Sbjct: 355 CSEEAVKIFVGTRNTIVVNADTYVVLLSAIAEYSIPEEGLRKGKEAH-GHMLRTGLTDLK 413

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
           + + + LV++YAKCG +D A +IF  M   + I+WN++IS   QNG
Sbjct: 414 IAVSNGLVNMYAKCGAIDSASKIFQLMEATDRISWNTIISALDQNG 459



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 127/276 (46%), Gaps = 17/276 (6%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--GLVDESHRVFDKMLKKNSVSSSAL 58
           RL    +VH  +       N  V ++L+ MYG C  G    + RVFD    ++ ++ +AL
Sbjct: 181 RLGFATQVHGLLSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNAL 240

Query: 59  LQGYCQTGDFESVIRIFREMEEIDL--------FSFGIVLRACAGLAALRLGKEVHCQYI 110
           +  Y + GD  S   +F +M+  D          +FG ++ A +  +      +     +
Sbjct: 241 MSVYAKKGDVVSTFTLFMDMQREDSRIQLRPTEHTFGSLITATSLSSGSSAVLDQVFVSV 300

Query: 111 RRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169
            +SGC  D+ + SALV  +A+ G +D A  IFL +  +N +T N +I G  +    EEA+
Sbjct: 301 LKSGCSSDLYVGSALVSAFARHGLIDEAKDIFLSLKEKNAVTLNGLIVGLVKQHCSEEAV 360

Query: 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGL----IDRGRKHFASMTKEYRIKPKIEHYNC 225
           +IF   T      +  +++ +LSA +   +    + +G++    M +      KI   N 
Sbjct: 361 KIFVG-TRNTIVVNADTYVVLLSAIAEYSIPEEGLRKGKEAHGHMLRTGLTDLKIAVSNG 419

Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
           +V++  + G ++ A  + +  +   D   W  ++ A
Sbjct: 420 LVNMYAKCGAIDSASKIFQLMEAT-DRISWNTIISA 454



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 8/123 (6%)

Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162
           + +H + I+R    D+ + + LV+ YAK   +  A ++F +MP RN ++W  ++SG+   
Sbjct: 80  ENLHVELIKRGLNHDLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQ 139

Query: 163 GRGEEALRIFDDM---TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219
           G  EEA R+F  M    E G +P   +F  +L AC      D G       T+ + +  K
Sbjct: 140 GITEEAFRVFRAMLREVEPGCRPTSFTFGTLLRACQ-----DGGPDRLGFATQVHGLLSK 194

Query: 220 IEH 222
            E+
Sbjct: 195 TEY 197


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 122/319 (38%), Positives = 190/319 (59%), Gaps = 6/319 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N V  ++++  Y K G +  + ++FD++  K+ +S S+++  Y Q   F   + +FR+M+
Sbjct: 576 NTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQ 635

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
               + D      VL ACA L AL LGK +H  Y+RR+  K D I+E++L+D++AKCGC+
Sbjct: 636 RAKVKPDAVVIASVLSACAHLGALDLGKWIH-DYVRRNNIKTDTIMENSLIDMFAKCGCM 694

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
             A Q+F +M  ++ ++WNS+I G A NG  +EAL IF  M   G +P+ V+F+GVL AC
Sbjct: 695 QEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIAC 754

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           ++  L+  G  HF  M   + ++P+++HY C+V +L RAG LE+A+  I       D  +
Sbjct: 755 ANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVV 814

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W +LLGAC T  N  VAE   KK+ EL P     Y+LL N+Y +  RW+DA  +R  M  
Sbjct: 815 WRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASADRWSDALNVRQWMAD 874

Query: 315 SGVKKMPGKSWIEANSKLN 333
           + V+K P  S +++ S  N
Sbjct: 875 TAVRKSPACSVVDSASSTN 893



 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 184/319 (57%), Gaps = 11/319 (3%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
           NVV  + ++  +   G ++ +  +FD+M  +N VS + L+ GY +   +   + +FR M 
Sbjct: 5   NVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMM 64

Query: 79  ------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132
                  EI + +   V+ A + L  + +G+ +H   +++    D  + ++L+DLYAK G
Sbjct: 65  AGGISPSEITVLA---VVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIG 121

Query: 133 CVDFAHQIFLQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
            V  + ++F +M   RNL++W S+ISGFA +G   EAL +F +M   G +P+ ++F+ V+
Sbjct: 122 SVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVI 181

Query: 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           +ACSH GL+++G   F SM  EY I P+I+H+ C++D+LGRAG L EAE +IE      +
Sbjct: 182 NACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVN 241

Query: 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311
             +W +LLG C+ +    + +R  K I +L+ +    + +L NV   +GR++DA + R L
Sbjct: 242 VIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKL 301

Query: 312 MKYSGVKKMPGKSWIEANS 330
           +    + K+PG + +   S
Sbjct: 302 LDERKIVKVPGLALVVTRS 320



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 142/294 (48%), Gaps = 38/294 (12%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
           K+G+++H+ VI LG   ++ V +SL+ +Y  CG +  +  +FD+ML K+ VS ++L+ GY
Sbjct: 427 KEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGY 486

Query: 63  CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC--- 115
            Q   F+ V+ +F  M+    + D  +   V+ AC  L    +  +   +YI R+     
Sbjct: 487 SQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMA-DCMVRYIERNHIEVD 545

Query: 116 -----------------------------KDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
                                        K+ +  +A++  YAK G +  A +IF Q+P 
Sbjct: 546 VYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPN 605

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           ++LI+W+SMI  ++Q     ++L +F  M     KPD V    VLSAC+H+G +D G K 
Sbjct: 606 KDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLG-KW 664

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
                +   IK      N ++D+  + G ++EA  +    + +   S   ++LG
Sbjct: 665 IHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILG 718



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 160/320 (50%), Gaps = 14/320 (4%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYG--KCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           K++HA ++  GL       S ++  Y   +  LV  +H+VF+++    +   + LL+G  
Sbjct: 328 KKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLV-FAHKVFEQIESPTTFLWNTLLRGLA 386

Query: 64  QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           Q+   +  I  +++ +E     D  +F  VL+ACA   A + G+++H   I+     D+ 
Sbjct: 387 QSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIF 446

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + ++L+ LYA CG +  A  IF +M V+++++WNS+I G++Q  R +E L +F+ M    
Sbjct: 447 VSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEE 506

Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
            + D V+ + V+SAC+H+G           + + + I+  +   N ++D   R G L+ A
Sbjct: 507 VQADKVTMVKVISACTHLGDWSMADCMVRYIERNH-IEVDVYLGNTLIDYYCRIGQLQSA 565

Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL-SYVLLDNVYRA 298
           E +      ++  +L   ++ A     N       AKKI +  P+  L S+  +   Y  
Sbjct: 566 EKVFSQMKDKNTVTL-NAMIHAYAKGGNL----VSAKKIFDQIPNKDLISWSSMICAYSQ 620

Query: 299 VGRWNDAFKIRTLMKYSGVK 318
              ++D+ ++   M+ + VK
Sbjct: 621 ASHFSDSLELFRQMQRAKVK 640



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 9/148 (6%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K+V+  + ++  +A  G +++A  +F QMP RN+++W  +I G+ +     EA+ +F  M
Sbjct: 4   KNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHM 63

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLG 231
             GG  P  ++ + V+ A S++G I  G      M   Y +K  I       N ++DL  
Sbjct: 64  MAGGISPSEITVLAVVPAISNLGGILMGE-----MLHGYCVKKGIMSDARVGNSLIDLYA 118

Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLL 259
           + G ++ +  + +    R +   W  ++
Sbjct: 119 KIGSVQNSLKVFDEMLDRRNLVSWTSII 146



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 27/219 (12%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQGYC 63
           G+ +H   +  G+  +  V +SL+D+Y K G V  S +VFD+ML ++N VS ++++ G+ 
Sbjct: 91  GEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFA 150

Query: 64  QTGDFESVIRIFREMEEIDL----FSFGIVLRACA--GLA--ALRLGKEVHCQY-----I 110
             G     + +F EM    +     +F  V+ AC+  GL    L   K +  +Y     I
Sbjct: 151 MHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEI 210

Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI---SGFAQNGRGE 166
           +  GC        ++D+  + G +  A QI   +PV  N+I W  ++   S + +   G+
Sbjct: 211 KHFGC--------IIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGK 262

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            A+++  D+ E  +  D      VL+        ++ RK
Sbjct: 263 RAIKMISDL-ERESGGDFAVLSNVLNELGRFSDAEQARK 300



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 22/176 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK +H  V    +  + ++E+SL+DM+ KCG + E+ +VF +M +K+++S ++++ G
Sbjct: 659 LDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILG 718

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACA-------GLAALRLGKEVHC--Q 108
               G  +  + IF  M       +  +F  VL ACA       GL      K VH    
Sbjct: 719 LANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEP 778

Query: 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNG 163
            ++  GC        +V + ++ G ++ A     +MP+  + + W  ++     +G
Sbjct: 779 QMKHYGC--------VVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACKTHG 826


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 122/322 (37%), Positives = 196/322 (60%), Gaps = 6/322 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF----ESVIRIF 75
           N V  ++++  Y + G +D +  +F  M +KN VS ++L+ G+ Q   +    +S++ + 
Sbjct: 389 NSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMG 448

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVIIESALVDLYAKCGCV 134
           +E ++ D  +F   L ACA LAAL++G ++H +YI +SG   D+ + +AL+ +YAKCG V
Sbjct: 449 KEGKKPDQSTFACTLSACANLAALQVGNQLH-EYILKSGYMNDLFVGNALIAMYAKCGRV 507

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
             A Q+F  +   +LI+WNS+ISG+A NG   +A + F+ M+     PD V+FIG+LSAC
Sbjct: 508 QSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSAC 567

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           SH GL ++G   F  M +++ I+P  EHY+C+VDLLGR G LEEA   +     + ++ L
Sbjct: 568 SHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGL 627

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LLGAC   +N  +    A+++ EL+P    +Y+ L N++   GRW +  ++R LM+ 
Sbjct: 628 WGSLLGACRVHKNLELGRFAAERLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLMRG 687

Query: 315 SGVKKMPGKSWIEANSKLNHDL 336
               K PG SWIE  +++ H L
Sbjct: 688 KRAGKQPGCSWIEVQNQIQHFL 709



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 121/232 (52%), Gaps = 15/232 (6%)

Query: 22  VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEI 81
           V  +++++ Y + G +DE+ +V+++M  K+  + +AL+ G  Q G  +   ++F  +   
Sbjct: 298 VSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGAH 357

Query: 82  DLFSFGIVLRACAGLAALRLGK-EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
           D+  +  ++   AG +  R G+ +      R+   K+ +  + ++  YA+ G +D A +I
Sbjct: 358 DVVCWNSMI---AGYS--RSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEI 412

Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
           F  M  +N+++WNS+I+GF QN    +AL+    M + G KPD  +F   LSAC+++  +
Sbjct: 413 FQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAAL 472

Query: 201 DRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADC 248
             G +       EY +K    +     N ++ +  + G ++ AE +  + +C
Sbjct: 473 QVGNQ-----LHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIEC 519



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 139/293 (47%), Gaps = 16/293 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+V  +S++ +  K   + ++ ++FD+M  +N VS + ++ GY      E    +F  M 
Sbjct: 47  NLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMP 106

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
           E D FS+ +++        L   +E+      +    D    +A++  YAK G  + A +
Sbjct: 107 ERDNFSWALMITCYTRKGKLEKARELLELVPDK---LDTACWNAMIAGYAKKGQFNDAKK 163

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           +F QMP ++L+++NSM++G+ QNG+   AL+ F+ MTE       VS+  +++     G 
Sbjct: 164 VFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNV----VSWNLMVA-----GY 214

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +  G    A    E    P    +  M+  L + G + EA  L +    ++  S W  ++
Sbjct: 215 VKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVS-WNAMI 273

Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312
              T  ++  V E V K   ++     +S+  + N Y  VG+ ++A ++   M
Sbjct: 274 A--TYVQDLQVDEAV-KLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQM 323



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 109/225 (48%), Gaps = 13/225 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NVV  + +V  Y K G +  + ++F+K+   N+VS   +L G  + G       +F  M 
Sbjct: 203 NVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMP 262

Query: 80  EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
             ++ S+  ++     +  L++ + V  +  ++   KD +  + +++ Y + G +D A Q
Sbjct: 263 SKNVVSWNAMI--ATYVQDLQVDEAV--KLFKKMPHKDSVSWTTIINGYIRVGKLDEARQ 318

Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
           ++ QMP +++    +++SG  QNGR +EA ++F  +       D V +  +++  S  G 
Sbjct: 319 VYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRI----GAHDVVCWNSMIAGYSRSGR 374

Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
           +D     F  M     IK  +  +N M+    +AG ++ A  + +
Sbjct: 375 MDEALNLFRQMP----IKNSVS-WNTMISGYAQAGQMDRATEIFQ 414



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           K+++  ++++ + AK   +  A Q+F QM +RNL++WN+MI+G+  N   EEA  +FD M
Sbjct: 46  KNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVM 105

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            E     D+ S+  +++  +  G +++ R+    +      K     +N M+    + G 
Sbjct: 106 PE----RDNFSWALMITCYTRKGKLEKARELLELVPD----KLDTACWNAMIAGYAKKGQ 157

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
             +A+ + E    + D   +  +L   T     H+A +  + + E
Sbjct: 158 FNDAKKVFEQMPAK-DLVSYNSMLAGYTQNGKMHLALQFFESMTE 201



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 17/156 (10%)

Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
           K G V+ A +IF  M  +NL+T+NSMIS  A+N R  +A ++FD M    +  + VS+  
Sbjct: 29  KLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQM----SLRNLVSWNT 84

Query: 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN--CMVDLLGRAGLLEEAETLIENAD 247
           +++   H  +++   + F  M       P+ ++++   M+    R G LE+A  L+E   
Sbjct: 85  MIAGYLHNNMVEEASELFDVM-------PERDNFSWALMITCYTRKGKLEKARELLELVP 137

Query: 248 CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283
            + D++ W  ++      +     +  AKK+ E  P
Sbjct: 138 DKLDTACWNAMIAGYA--KKGQFND--AKKVFEQMP 169



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 20/168 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G ++H  ++  G   ++ V ++L+ MY KCG V  + +VF  +   + +S ++L+ G
Sbjct: 472 LQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISG 531

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRAC--AGLAALRLGKEVHCQYIRRSGC 115
           Y   G      + F +M       D  +F  +L AC  AGLA   L        I +   
Sbjct: 532 YALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLD-------IFKCMI 584

Query: 116 KDVIIE------SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
           +D  IE      S LVDL  + G ++ A      M V+ N   W S++
Sbjct: 585 EDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLL 632


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 122/332 (36%), Positives = 196/332 (59%), Gaps = 23/332 (6%)

Query: 3   KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK--NSVSSSALLQ 60
           ++G+E+H  ++   +    +++  LVDMY KCG +D + +V+D+ +KK  N+   +++L 
Sbjct: 396 QKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILA 455

Query: 61  GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           GY   G  +     F EM E D+    + +     L                     +++
Sbjct: 456 GYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNL---------------------LVL 494

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
           E+ALVD+Y+KCG +  A  +F  M  +N+++WN+MISG++++G  +EAL ++++M + G 
Sbjct: 495 ETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGM 554

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
            P+ V+F+ +LSACSH GL++ G + F SM ++Y I+ K EHY CMVDLLGRAG LE+A+
Sbjct: 555 YPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAK 614

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             +E      + S W  LLGAC   ++  +    A+++ EL P     YV++ N+Y A G
Sbjct: 615 EFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAG 674

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
           RW +   IR +MK  GVKK PG SWIE NS++
Sbjct: 675 RWKEVEDIRQMMKMKGVKKDPGVSWIEINSEI 706



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 146/264 (55%), Gaps = 8/264 (3%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           GK+VH+K+I  G  G+  V ++L+DMY KC   +   +VFD+M ++N V+ ++++    Q
Sbjct: 194 GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 253

Query: 65  TGDFESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
            G F   + +F  M+E       D F+F  +L  CA       G+++H   IR +  K++
Sbjct: 254 FGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNI 313

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
           I+E+ LV +Y++CG +++A +IF +M  RN  +WNSMI G+ QNG  +EALR+F  M   
Sbjct: 314 IVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLN 373

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
           G KPD  S   +LS+C  +    +GR+    + +    +  I     +VD+  + G ++ 
Sbjct: 374 GIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV-VLVDMYAKCGSMDY 432

Query: 239 AETLIENADCR-HDSSLWEVLLGA 261
           A  + +    +  +++LW  +L  
Sbjct: 433 AWKVYDQTIKKDRNTALWNSILAG 456



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 167/336 (49%), Gaps = 27/336 (8%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDE---SHRVFDKMLKKNSVSSSAL 58
            ++GK +H ++I+ G   +  + + ++ +Y + G +D+   + ++F++M ++N  + + +
Sbjct: 87  FQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTM 146

Query: 59  LQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           +  Y +  D+     IF  M +I    D F+F   LR C  L +   GK+VH + I    
Sbjct: 147 ILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGF 206

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D  + +AL+D+YAKC   +   ++F +M  RN +TWNS+IS  AQ G   +AL +F  
Sbjct: 207 KGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLR 266

Query: 175 M--TEGGTKPDHVSFIGVLSACSHMGLIDRGRK---HF--ASMTKEYRIKPKIEHYNCMV 227
           M  +E G +PD  +F  +L+ C++    ++GR+   H   A++TK   ++ ++ H   M 
Sbjct: 267 MQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVH---MY 323

Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDC 285
              GR    +E    I N     ++  W  ++           A R+ K++    +KPDC
Sbjct: 324 SECGRLNYAKE----IFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDC 379

Query: 286 -HLSYVLLDNVYRA---VGRWNDAFKIRTLMKYSGV 317
             LS +L   V  +    GR    F +R  M+  G+
Sbjct: 380 FSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGI 415



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 76  REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           +   +++   +  +++ C    + + GK +H Q I      D  + + ++ LYA+ GC+D
Sbjct: 64  KPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLD 123

Query: 136 ---FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
              +A ++F +MP RNL  WN+MI  +A+     EA  IFD M + G  PD+ +F   L 
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALR 183

Query: 193 ACSHMGLIDRGRK 205
            C  +   D G++
Sbjct: 184 VCGALRSRDGGKQ 196


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 213/372 (57%), Gaps = 45/372 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK +H++ + LG   ++ V + L+D+Y + G V  + ++FD M +K+ VS +A+L  
Sbjct: 140 IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTC 199

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI--------------------------------- 88
           Y + G+ ++   +F  MEE D   + +                                 
Sbjct: 200 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 259

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             VL AC  L AL  G+ VH  YI  +G + +V + +ALVD+Y+KCG ++ A  +F ++ 
Sbjct: 260 LSVLSACGQLGALESGRWVH-SYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID 318

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            ++++ WNSMI G+A +G  +EAL++F  M   G  P +++FIG+LSAC H G +  G  
Sbjct: 319 DKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWD 378

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F  M  EY I+PKIEHY CMV+LLGRAG +E+A  L++N +   D  LW  LLGAC   
Sbjct: 379 IFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGAC--- 435

Query: 266 RNAHVAERVAKKIMELKPDCHL----SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMP 321
              H    + +KI+EL  D +L    +Y+LL N+Y AVG W+   ++RT+MK SGVKK P
Sbjct: 436 -RLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEP 494

Query: 322 GKSWIEANSKLN 333
           G S IE N+K++
Sbjct: 495 GCSSIEVNNKVH 506



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 41/288 (14%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           ++HA +   GL  + ++   L   Y   G +D S  +F +    +    +A++ G+   G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 67  DFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
             E  +  + +M     E + F+F  +L+ C     +  GK +H Q ++     D+ + +
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRT 163

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLIT------------------------------- 151
            L+D+YA+ G V  A Q+F  MP ++L++                               
Sbjct: 164 GLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 223

Query: 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
           WN MI G+ QNG   EAL +F  M +   KP+ V+ + VLSAC  +G ++ GR    S  
Sbjct: 224 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRW-VHSYI 282

Query: 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
           +   I+  +     +VD+  + G LE+A  + +  D + D   W  ++
Sbjct: 283 ENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDK-DVVAWNSMI 329


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/317 (38%), Positives = 191/317 (60%), Gaps = 4/317 (1%)

Query: 21  VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80
           + + + L+DMY K G ++ + +VF+ M +++ VS ++++ GY + G  +  +R+F EME+
Sbjct: 259 LTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK 318

Query: 81  IDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF 136
            DLF   I    +L ACA LAAL  G+E+H   +R     D  + +ALVD+Y KCG +  
Sbjct: 319 EDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGL 378

Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
           A  +F  +P ++L++W  MI+G+  +G G EA+  F++M   G +PD VSFI +L ACSH
Sbjct: 379 ARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSH 438

Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
            GL+D G   F  M     I+PK EHY C+VDLL RAG L +A   I+      D+++W 
Sbjct: 439 SGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWG 498

Query: 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
            LL  C  + +  +AE+VA+ + EL+P+    YVLL N+Y    +W +  K+R  +   G
Sbjct: 499 ALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRG 558

Query: 317 VKKMPGKSWIEANSKLN 333
           ++K PG SWIE   K++
Sbjct: 559 LRKNPGCSWIEIKGKVH 575



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 136/287 (47%), Gaps = 30/287 (10%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ G+ +H+ + +  +  + V+ S LV MY  CG + E  R+FDK+  +     + L+ G
Sbjct: 117 IQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNG 176

Query: 62  YCQTGDFESVIRIFREMEEI------------------DLFSFGIVLRACAGLAALRLGK 103
           Y + G+F   + +F+ M E+                  D+ S+  ++           G 
Sbjct: 177 YAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGL 236

Query: 104 EVHCQYIRRSGCKDV--------IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
           ++  Q +      D+         + + L+D+Y+K G ++ A Q+F  M  R++++W SM
Sbjct: 237 DLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSM 296

Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEY 214
           I+G+A+ G  + ++R+F +M +    P+ ++   +L AC+ +  ++RG++ H   +   +
Sbjct: 297 IAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGF 356

Query: 215 RIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
            +   +   N +VD+  + G L  A  L +      D   W V++  
Sbjct: 357 SLDRHVA--NALVDMYLKCGALGLARLLFDMIP-EKDLVSWTVMIAG 400



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L++G+E+H  ++  G   +  V ++LVDMY KCG +  +  +FD + +K+ VS + ++ G
Sbjct: 341 LERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAG 400

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y   G     I  F EM     E D  SF  +L AC+    L  G       +R + C +
Sbjct: 401 YGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFF-NMMRNNCCIE 459

Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISG 158
              E  + +VDL A+ G +  A++    MP+    T W +++ G
Sbjct: 460 PKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 503



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 23/222 (10%)

Query: 62  YCQTGDFESVIRIFREMEEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           +C+ G+    + +  +  + DL   ++  VL+ CA L +++ G+ +H          D +
Sbjct: 78  FCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGV 137

Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
           + S LV +Y  CG +    +IF ++    +  WN +++G+A+ G   E+L +F  M E G
Sbjct: 138 LGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELG 197

Query: 180 TK--------------PDHVSFIGVLSACSHMGLIDRGRKHFASM-------TKEYRIKP 218
            +               D +S+  ++S     GL ++G   F  M            +  
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV 257

Query: 219 KIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
           ++   NC++D+  ++G L  A  + E    R   S   ++ G
Sbjct: 258 ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAG 299


>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
          Length = 505

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/318 (37%), Positives = 197/318 (61%), Gaps = 4/318 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  + ++  Y K G    +  +FD M ++N VS + ++ GY Q    E  + +FR M+
Sbjct: 143 DVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQ 202

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
               E D  +   VL AC  L A+ LG+ VH   +RR  C+++ + ++++D+Y KCGC++
Sbjct: 203 VEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIE 262

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
            A ++F  M  ++++TW ++I+GFA +G G +A+ +F  M      P+ V+F+ +LSACS
Sbjct: 263 KAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAILSACS 322

Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
           H+GL D GR +F  M  +YRIKP++EHY CMVDLLGRAG L+EA+ L++N   + ++++W
Sbjct: 323 HVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIW 382

Query: 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315
             LL A  T  +A + E+    ++EL+P+   +Y+LL N++    RW D  K+R  M+  
Sbjct: 383 GALLAAARTHGDAGLGEQALLHLIELEPNNSGNYILLSNIFAEQERWGDVSKLRKAMRER 442

Query: 316 GVKKMPGKSWIEANSKLN 333
           G++ +PG S IE +  ++
Sbjct: 443 GLRNVPGASSIEVDGMVH 460



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 36/193 (18%)

Query: 55  SSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           SS+L+Q YC  G       +F EM                                    
Sbjct: 116 SSSLVQLYCTCGHVADARSVFDEM-----------------------------------A 140

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
            +DV+  + ++  Y K G    A ++F  MP RN+++W ++I G+AQ  R E+A+ +F  
Sbjct: 141 VRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRR 200

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
           M   G + D V+ + VL+AC  +G +D G      + +    + +I   N ++D+  + G
Sbjct: 201 MQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQ-EIPLMNSIIDMYMKCG 259

Query: 235 LLEEAETLIENAD 247
            +E+A  + E  +
Sbjct: 260 CIEKAVEVFEGME 272



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 9/174 (5%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+ VH  V+  GLC  + + +S++DMY KCG ++++  VF+ M +K+ V+ + L+ G+  
Sbjct: 229 GEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFAL 288

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G     + +F  ME  ++     +F  +L AC+ +    LG+      + +   K  + 
Sbjct: 289 HGLGLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVE 348

Query: 121 E-SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG---FAQNGRGEEAL 169
               +VDL  + GC+  A  +   MP++ N   W ++++        G GE+AL
Sbjct: 349 HYGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDAGLGEQAL 402


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 205/336 (61%), Gaps = 4/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G+++H  V  LG+  ++ +ES+L+DMY KCG ++++ ++F+   + + VS + +L G
Sbjct: 159 IREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVG 218

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  E  I++F +M +    ID      +L       +L LGK++H   I++S   +
Sbjct: 219 LAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSN 278

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + + L+++Y+KCG +D + +IF  MP RN ++WNSMI+ FA++G G  AL+++++M  
Sbjct: 279 YFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRL 338

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G  P  V+F+ +L AC+H+GL+++G     SM K+Y I P++EHY C+VD++GRAGLL 
Sbjct: 339 EGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLN 398

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE    +    +W+ LLGAC+   N+ + +  A ++    P+    Y+LL N+Y 
Sbjct: 399 EAKKFIERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYS 458

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G+W +  +    MK  GV K  G SWIE   +++
Sbjct: 459 SEGKWKERARTIKKMKDMGVTKETGISWIEIEKQIH 494



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 112/201 (55%), Gaps = 7/201 (3%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K +H+ V   G    + V ++L+  Y +CG      RVFD+M +KN V+ +A++ G  Q 
Sbjct: 62  KMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQG 121

Query: 66  GDFESVIRIFREMEE--IDLFSFGIV--LRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
             +E  +++F +M +  +D  S   +  L AC+GL A+R G+++H    +     D+ IE
Sbjct: 122 QFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIE 181

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT- 180
           SAL+D+Y+KCG ++ A +IF      + ++   ++ G AQNG  EE++++F  M + G  
Sbjct: 182 SALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVV 241

Query: 181 -KPDHVSFI-GVLSACSHMGL 199
             P+ +S I GV    + + L
Sbjct: 242 IDPNMISAILGVFGIDTSLAL 262



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 114/219 (52%), Gaps = 6/219 (2%)

Query: 47  MLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSF-----GIVLRACAGLAALRL 101
           M  K+++S ++ + G    GD E   R+F+++ E  ++ F       VL AC       +
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 60

Query: 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161
            K +H         +++ + +AL+  Y +CGC     ++F +M  +N++TW ++ISG +Q
Sbjct: 61  SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 120

Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
               EE+L++F  M +G   P+ ++++  L ACS +  I  GR+    +  +  +   + 
Sbjct: 121 GQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQ-IHGLVWKLGVHFDLC 179

Query: 222 HYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             + ++D+  + G LE+A  + E+A+   + S+  +L+G
Sbjct: 180 IESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVG 218


>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
          Length = 888

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 196/361 (54%), Gaps = 36/361 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD----------------------- 38
           L+ G+++H + + +    NV V S+L+DMY KC  +                        
Sbjct: 394 LRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISG 453

Query: 39  --------ESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSF 86
                   E+  +F KM  +N  S ++++ GY Q   F   ++ F  M    +     +F
Sbjct: 454 YSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITF 513

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA L +L +GK VH + I+    + + + +AL D+YAK G +D + ++F +MP 
Sbjct: 514 SSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPK 573

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN + W +MI G A+NG  EE++ +F+DM   G  P+  +F+ +L ACSH GL++    H
Sbjct: 574 RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAM-H 632

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           +  M +   I PK +HY CMVD+L RAG L EAE L+   + + +++ W  LL AC  +R
Sbjct: 633 YFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYR 692

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  + ER AK++ EL  D    YVLL N+Y + G+W DA ++R LMK   +KK  G SW+
Sbjct: 693 NKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWV 752

Query: 327 E 327
           +
Sbjct: 753 Q 753



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 138/306 (45%), Gaps = 68/306 (22%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+ V +SL+ +Y + G  D + R+FD+M  ++ VS +ALL  Y + GD E   R+  EM 
Sbjct: 280 NLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMP 339

Query: 80  E----------------------IDLFS-------------FGIVLRACAGLAALRLGKE 104
           E                      + L+S             F  VL ACA L  LR G++
Sbjct: 340 ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK 399

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM--------- 155
           +H Q ++ +   +V + SAL+D+Y KC  +  A  IF  +P +N++ WNS+         
Sbjct: 400 IHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSK 459

Query: 156 ----------------------ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
                                 ISG+AQN +  +AL+ F  M   G  P  ++F  VL A
Sbjct: 460 MVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLA 519

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+ +  ++ G+   A + K   IK  I     + D+  ++G L+ ++ +      R+D +
Sbjct: 520 CASLCSLEMGKMVHAKIIK-LGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVA 578

Query: 254 LWEVLL 259
            W  ++
Sbjct: 579 -WTAMI 583



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 35/159 (22%)

Query: 47  MLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVH 106
           +L KN    ++L+  Y + GD ++  R+F EME                           
Sbjct: 276 LLDKNLGVRNSLITLYLRKGDADAARRMFDEME--------------------------- 308

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
                    +DV+  +AL+D+YA+ G ++ A ++  +MP RN ++W ++++   Q G  +
Sbjct: 309 --------VRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAK 360

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           EA+ ++  M   G +P+   F  VL AC+ +  +  GRK
Sbjct: 361 EAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK 399



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 1/165 (0%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           + V+  + +VD   K G V  A +++ Q P+ ++  + +MI+GF  N   ++AL +F +M
Sbjct: 177 RSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEM 236

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  P+ ++ + V+ AC   G  D          K   +   +   N ++ L  R G 
Sbjct: 237 LSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGD 296

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
            + A  + +  + R D   W  LL       +   A RV  ++ E
Sbjct: 297 ADAARRMFDEMEVR-DVVSWTALLDVYAELGDLEGARRVLDEMPE 340


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/331 (38%), Positives = 193/331 (58%), Gaps = 7/331 (2%)

Query: 5   GKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           G+ VH   +  G +  +V V S+LVDMY KCG  D++ +VF++M  +N VS  AL+ GY 
Sbjct: 223 GRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYV 282

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DV 118
           Q   ++  +++F+EM     E +  +    L ACA L +L  G+ +H +Y+ RS    + 
Sbjct: 283 QCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLH-EYVDRSKLGLNS 341

Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
            + +ALVD+Y+KCGCVD A  +F ++P +++  W +MI+G A  G    +L +F  M   
Sbjct: 342 KLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRS 401

Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
             +P+ V+F+GVLSAC+H GL+D G + F  M  +YR++P ++HY CMVDLLGRAG LEE
Sbjct: 402 RVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEE 461

Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
           A   IE+        +W  L   C   +   + E +   +++L+P     Y+LL N+Y  
Sbjct: 462 AIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSR 521

Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
             +W  A  +R LMK  GV K P  SWIE N
Sbjct: 522 CQKWEAAANVRRLMKGKGVDKSPACSWIEVN 552



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 143/263 (54%), Gaps = 17/263 (6%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           + +A ++  GL  +  V++SLV  +  CG VD S R+F +  KK+ VS +AL+ G  + G
Sbjct: 124 QFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNG 183

Query: 67  DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG--CKDVII 120
                +  F EM     E+D  +   VL A A L  +  G+ VH  Y+  SG    DV +
Sbjct: 184 RAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYV-ESGRVIWDVYV 242

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            SALVD+Y+KCG  D A ++F +MP RNL++W ++I+G+ Q  R +EAL++F +M   G 
Sbjct: 243 GSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGI 302

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI----EHYNCMVDLLGRAGLL 236
           +P+  +    L+AC+ +G +D+GR        EY  + K+    +    +VD+  + G +
Sbjct: 303 EPNQSTVTSALTACAQLGSLDQGR-----WLHEYVDRSKLGLNSKLGTALVDMYSKCGCV 357

Query: 237 EEAETLIENADCRHDSSLWEVLL 259
           +EA  + E    + D   W  ++
Sbjct: 358 DEALLVFEKLPAK-DVYPWTAMI 379



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 79/155 (50%), Gaps = 4/155 (2%)

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           D  ++++LV  +A CG VD + ++F++   +++++W ++I+G  +NGR  EAL  F +M 
Sbjct: 137 DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMR 196

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
             G + D V+ + VL A + +  +  GR       +  R+   +   + +VD+  + G  
Sbjct: 197 SSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYC 256

Query: 237 EEAETLIENADCRHDSSLWEVLLGA---CTTFRNA 268
           ++A  +      R+  S W  L+     C  ++ A
Sbjct: 257 DDAVKVFNEMPTRNLVS-WGALIAGYVQCNRYKEA 290



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 22/171 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+ +H  V    L  N  + ++LVDMY KCG VDE+  VF+K+  K+    +A++ G
Sbjct: 322 LDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMING 381

Query: 62  YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACA--GLA--ALRLGKEVHCQY---- 109
               GD  S + +F +M     + +  +F  VL ACA  GL    L L + + C Y    
Sbjct: 382 LAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEP 441

Query: 110 -IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI-TWNSMISG 158
            +   GC        +VDL  + G ++ A +    MP+      W ++ SG
Sbjct: 442 NVDHYGC--------MVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSG 484


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/322 (37%), Positives = 191/322 (59%), Gaps = 4/322 (1%)

Query: 16  GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
           G+  +V V ++ +D+Y KCG ++++  VFD+M  +++V+  A++ GY   G     + +F
Sbjct: 72  GVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLF 131

Query: 76  REME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131
             M+    + D ++    L AC  L AL LG++            + ++ +AL+D+YAKC
Sbjct: 132 FAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKC 191

Query: 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191
           G    A  +F QM  R++I WN+MI G    G  + A  +   M + G K +  +FIG+L
Sbjct: 192 GSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLL 251

Query: 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
            +C+H GL++ GR++F +MT  YRI P+IEHY CMVDL  RAGLLEEA  LI +     +
Sbjct: 252 CSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLAN 311

Query: 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311
           + +W  LLG C   RNA +AE   K+++ L+P    +YV+L N+Y   GRW DA K+R  
Sbjct: 312 AVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLE 371

Query: 312 MKYSGVKKMPGKSWIEANSKLN 333
           MK  G++K+P  SW+E + K++
Sbjct: 372 MKAKGIEKVPASSWVELDGKVH 393



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
           MP  + ++W ++I+ +   G   EA+ +       G +PD  + + VL+AC+ +  ++ G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
              +A+  +E  +   +      +DL  + G +E+A ++ +    R D+  W  ++G   
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNR-DAVAWGAMVGGYA 119

Query: 264 TFRNAHVAERV----AKKIMELKPDCH 286
           +  N H  E +    A ++   KPDC+
Sbjct: 120 S--NGHPREALDLFFAMQMEGAKPDCY 144


>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
          Length = 950

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 196/361 (54%), Gaps = 36/361 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD----------------------- 38
           L+ G+++H + + +    NV V S+L+DMY KC  +                        
Sbjct: 394 LRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISG 453

Query: 39  --------ESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSF 86
                   E+  +F KM  +N  S ++++ GY Q   F   ++ F  M    +     +F
Sbjct: 454 YSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITF 513

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA L +L +GK VH + I+    + + + +AL D+YAK G +D + ++F +MP 
Sbjct: 514 SSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPK 573

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN + W +MI G A+NG  EE++ +F+DM   G  P+  +F+ +L ACSH GL++    H
Sbjct: 574 RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAM-H 632

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           +  M +   I PK +HY CMVD+L RAG L EAE L+   + + +++ W  LL AC  +R
Sbjct: 633 YFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYR 692

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  + ER AK++ EL  D    YVLL N+Y + G+W DA ++R LMK   +KK  G SW+
Sbjct: 693 NKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWV 752

Query: 327 E 327
           +
Sbjct: 753 Q 753



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 138/306 (45%), Gaps = 68/306 (22%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+ V +SL+ +Y + G  D + R+FD+M  ++ VS +ALL  Y + GD E   R+  EM 
Sbjct: 280 NLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMP 339

Query: 80  E----------------------IDLFS-------------FGIVLRACAGLAALRLGKE 104
           E                      + L+S             F  VL ACA L  LR G++
Sbjct: 340 ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK 399

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM--------- 155
           +H Q ++ +   +V + SAL+D+Y KC  +  A  IF  +P +N++ WNS+         
Sbjct: 400 IHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSK 459

Query: 156 ----------------------ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
                                 ISG+AQN +  +AL+ F  M   G  P  ++F  VL A
Sbjct: 460 MVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLA 519

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+ +  ++ G+   A + K   IK  I     + D+  ++G L+ ++ +      R+D +
Sbjct: 520 CASLCSLEMGKMVHAKIIK-LGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVA 578

Query: 254 LWEVLL 259
            W  ++
Sbjct: 579 -WTAMI 583



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 35/159 (22%)

Query: 47  MLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVH 106
           +L KN    ++L+  Y + GD ++  R+F EME                           
Sbjct: 276 LLDKNLGVRNSLITLYLRKGDADAARRMFDEME--------------------------- 308

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
                    +DV+  +AL+D+YA+ G ++ A ++  +MP RN ++W ++++   Q G  +
Sbjct: 309 --------VRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAK 360

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           EA+ ++  M   G +P+   F  VL AC+ +  +  GRK
Sbjct: 361 EAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK 399



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 1/165 (0%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           + V+  + +VD   K G V  A +++ Q P+ ++  + +MI+GF  N   ++AL +F +M
Sbjct: 177 RSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEM 236

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  P+ ++ + V+ AC   G  D          K   +   +   N ++ L  R G 
Sbjct: 237 LSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGD 296

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
            + A  + +  + R D   W  LL       +   A RV  ++ E
Sbjct: 297 ADAARRMFDEMEVR-DVVSWTALLDVYAELGDLEGARRVLDEMPE 340


>gi|222618959|gb|EEE55091.1| hypothetical protein OsJ_02835 [Oryza sativa Japonica Group]
          Length = 575

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/321 (39%), Positives = 193/321 (60%), Gaps = 5/321 (1%)

Query: 17  LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFR 76
             G+V V SS++DMY KCG + ++ R+FD+M K+N VS SAL+ GY   G   + + IFR
Sbjct: 134 FAGDVFVGSSVLDMYAKCGHLADARRLFDEMPKRNVVSWSALICGYADAGMHSAAMEIFR 193

Query: 77  ----EMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132
               E   ++ F+   +LR CA      LG +VH + I+ +      + S+LV LY+KCG
Sbjct: 194 LALEEAVPVNDFTVSCILRVCAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCG 253

Query: 133 CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192
            V+ A+Q+F + P RNL  WN+ ++  AQ+G    A + F DM   G +P+ ++F+ +++
Sbjct: 254 LVECAYQVFGEAPERNLGIWNAGLNASAQHGHTTAAFQRFMDMQNAGFRPNSITFLSLIT 313

Query: 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           ACSH GL+D G+++F S+ KEYRI+P+ EHY  MVDLLGR G + EA  LIE+       
Sbjct: 314 ACSHAGLVDEGKRYF-SLMKEYRIEPQAEHYAAMVDLLGRVGRISEALGLIESMPMEPPE 372

Query: 253 SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312
            +W  LL AC  F++A  A   AK++ E       +++LL + Y A GR  DA   R  M
Sbjct: 373 YVWGALLMACRMFKDADAAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHMDAALARKAM 432

Query: 313 KYSGVKKMPGKSWIEANSKLN 333
           + +GV+K  G SW+EA  +++
Sbjct: 433 RDAGVRKETGLSWLEAAGEVH 453



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 17/163 (10%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G +VHA+ I   L  +  V SSLV +Y KCGLV+ +++VF +  ++N    +A L    Q
Sbjct: 223 GAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIWNAGLNASAQ 282

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
            G   +  + F +M+         +F  ++ AC+    +  GK    +Y   S  K+  I
Sbjct: 283 HGHTTAAFQRFMDMQNAGFRPNSITFLSLITACSHAGLVDEGK----RYF--SLMKEYRI 336

Query: 121 E------SALVDLYAKCGCVDFAHQIFLQMPVRNL-ITWNSMI 156
           E      +A+VDL  + G +  A  +   MP+      W +++
Sbjct: 337 EPQAEHYAAMVDLLGRVGRISEALGLIESMPMEPPEYVWGALL 379


>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
          Length = 950

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 196/361 (54%), Gaps = 36/361 (9%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD----------------------- 38
           L+ G+++H + + +    NV V S+L+DMY KC  +                        
Sbjct: 394 LRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISG 453

Query: 39  --------ESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSF 86
                   E+  +F KM  +N  S ++++ GY Q   F   ++ F  M    +     +F
Sbjct: 454 YSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITF 513

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             VL ACA L +L +GK VH + I+    + + + +AL D+YAK G +D + ++F +MP 
Sbjct: 514 SSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPK 573

Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
           RN + W +MI G A+NG  EE++ +F+DM   G  P+  +F+ +L ACSH GL++    H
Sbjct: 574 RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAM-H 632

Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
           +  M +   I PK +HY CMVD+L RAG L EAE L+   + + +++ W  LL AC  +R
Sbjct: 633 YFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYR 692

Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
           N  + ER AK++ EL  D    YVLL N+Y + G+W DA ++R LMK   +KK  G SW+
Sbjct: 693 NKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWV 752

Query: 327 E 327
           +
Sbjct: 753 Q 753



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 138/306 (45%), Gaps = 68/306 (22%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+ V +SL+ +Y + G  D + R+FD+M  ++ VS +ALL  Y + GD E   R+  EM 
Sbjct: 280 NLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMP 339

Query: 80  E----------------------IDLFS-------------FGIVLRACAGLAALRLGKE 104
           E                      + L+S             F  VL ACA L  LR G++
Sbjct: 340 ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK 399

Query: 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM--------- 155
           +H Q ++ +   +V + SAL+D+Y KC  +  A  IF  +P +N++ WNS+         
Sbjct: 400 IHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSK 459

Query: 156 ----------------------ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
                                 ISG+AQN +  +AL+ F  M   G  P  ++F  VL A
Sbjct: 460 MVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLA 519

Query: 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS 253
           C+ +  ++ G+   A + K   IK  I     + D+  ++G L+ ++ +      R+D +
Sbjct: 520 CASLCSLEMGKMVHAKIIK-LGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVA 578

Query: 254 LWEVLL 259
            W  ++
Sbjct: 579 -WTAMI 583



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 35/159 (22%)

Query: 47  MLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVH 106
           +L KN    ++L+  Y + GD ++  R+F EME                           
Sbjct: 276 LLDKNLGVRNSLITLYLRKGDADAARRMFDEME--------------------------- 308

Query: 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166
                    +DV+  +AL+D+YA+ G ++ A ++  +MP RN ++W ++++   Q G  +
Sbjct: 309 --------VRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAK 360

Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
           EA+ ++  M   G +P+   F  VL AC+ +  +  GRK
Sbjct: 361 EAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK 399



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 1/165 (0%)

Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
           + V+  + +VD   K G V  A +++ Q P+ ++  + +MI+GF  N   ++AL +F +M
Sbjct: 177 RSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEM 236

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
              G  P+ ++ + V+ AC   G  D          K   +   +   N ++ L  R G 
Sbjct: 237 LSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGD 296

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
            + A  + +  + R D   W  LL       +   A RV  ++ E
Sbjct: 297 ADAARRMFDEMEVR-DVVSWTALLDVYAELGDLEGARRVLDEMPE 340


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/315 (38%), Positives = 196/315 (62%), Gaps = 6/315 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           +VV  + ++  Y   G + E+  +FD+M K+N VS SAL++GY Q G +   + +F+EM+
Sbjct: 232 DVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQ 291

Query: 80  ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
               ++D      +L ACA L AL  G+ +H  YI + G K D  + +AL+D+Y+KCG +
Sbjct: 292 VAKVKMDEVIVTTLLSACARLGALDQGRWLH-MYIDKHGIKVDAHLSTALIDMYSKCGRI 350

Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
           D A ++F +   + +  W+SMI G A +  GE+A+ +F  M E G +P  +++I +L+AC
Sbjct: 351 DMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAAC 410

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           +H GL+D G + F  M +  + KP+++HY C+VDLLGRAGLL +A  ++E    + D ++
Sbjct: 411 THSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAI 470

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LL AC   RN  + E+V + +++++P   ++YVL  NVY AV RW+ + K+R  MK 
Sbjct: 471 WRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKV 530

Query: 315 SGVKKMPGKSWIEAN 329
            G++K PG S IE N
Sbjct: 531 RGMQKNPGCSSIELN 545



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 40/279 (14%)

Query: 4   QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVD-ESHRVFDKMLKKNSVSSSALLQGY 62
           +GK+ HA++I       V   +SL+D YGK G V     RVFDK+   + VS + L+ GY
Sbjct: 153 EGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGY 212

Query: 63  CQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
            ++GD +   R+F EM E D+ S+ I+L                                
Sbjct: 213 VKSGDLDEARRLFDEMPERDVVSWTIMLVG------------------------------ 242

Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
                YA  G +  A  +F +MP RNL++W+++I G+ Q G   +AL +F +M     K 
Sbjct: 243 -----YADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKM 297

Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA-ET 241
           D V    +LSAC+ +G +D+GR     + K + IK        ++D+  + G ++ A + 
Sbjct: 298 DEVIVTTLLSACARLGALDQGRWLHMYIDK-HGIKVDAHLSTALIDMYSKCGRIDMAWKV 356

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
             E  D +    +W  ++G          A  +  K++E
Sbjct: 357 FQETGDKK--VFVWSSMIGGLAMHSFGEKAIELFAKMIE 393



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 130/291 (44%), Gaps = 23/291 (7%)

Query: 31  YGKCGLVDESHRVFDKM-LKKNSVSSSALLQGYCQTGDFESVIRIFREM------EEIDL 83
           +   G ++ + ++FD + + +NS   + +++ Y   G+       +  M         + 
Sbjct: 76  FDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPND 135

Query: 84  FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF-AHQIFL 142
           F+F  V  AC+    +  GK+ H Q I+      V   ++L+D Y K G V     ++F 
Sbjct: 136 FTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFD 195

Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
           ++   ++++WN +I+G+ ++G  +EA R+FD+M E     D VS+  +L   +  G +  
Sbjct: 196 KIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPER----DVVSWTIMLVGYADAGFLSE 251

Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN---ADCRHDSSLWEVLL 259
               F  M K   +      ++ ++    + G   +A  L +    A  + D  +   LL
Sbjct: 252 ASCLFDEMPKRNLVS-----WSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLL 306

Query: 260 GACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKI 308
            AC           +   I +  +K D HLS  L+D +Y   GR + A+K+
Sbjct: 307 SACARLGALDQGRWLHMYIDKHGIKVDAHLSTALID-MYSKCGRIDMAWKV 356



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 10/213 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L QG+ +H  +   G+  +  + ++L+DMY KCG +D + +VF +   K     S+++ G
Sbjct: 315 LDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGG 374

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
                  E  I +F +M E  +     ++  +L AC     + +G ++  + +     K 
Sbjct: 375 LAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKP 434

Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG--FAQNGR-GEEALRIF 172
            +     +VDL  + G +  A ++   MPV+ +   W +++S     +N   GE+  RI 
Sbjct: 435 RMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLHRNVELGEQVGRIL 494

Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
             M E     ++V F  V +A +   +  + R+
Sbjct: 495 IKM-EPQNDMNYVLFSNVYAAVNRWDISGKLRR 526


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 200/336 (59%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  K++H  +I  G+  ++   S+L+D+Y KC  V ++  VF++M +K+ V  +A+  G
Sbjct: 448 LELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFG 507

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  + E  ++++  ++    + + F+F  ++ A + LA+LR G++ H Q ++      
Sbjct: 508 YTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFC 567

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +ALVD+YAKCG ++ A ++F     R+++ WNSMIS  AQ+G  EEAL +F +M +
Sbjct: 568 PFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMK 627

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P++V+F+ VLSACSH G ++ G  HF SM   + IKP  EHY C+V LLGR+G L 
Sbjct: 628 EGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLF 686

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE       + +W  LL AC    N  + +  A+  +   P    SY+LL N++ 
Sbjct: 687 EAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFA 746

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G W D  K+R  M  S V K PG+SWIE N+K+N
Sbjct: 747 SKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVN 782



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 159/299 (53%), Gaps = 13/299 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G ++H  V+  G   +V V +SL+D Y K G ++E+  VFD++ +K +V+ + ++ G
Sbjct: 145 VEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAG 204

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G     + +F +M E     D +    VL AC+ L  L  GK++H   +RR    D
Sbjct: 205 YTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD 264

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + L+D Y KC  V    ++F QM V+N+I+W +MISG+ QN    EA+++F +M  
Sbjct: 265 VSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNR 324

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRA 233
            G KPD  +   VL++C     +++GR+  A     Y IK  +E      N ++D+  ++
Sbjct: 325 LGWKPDGFACTSVLTSCGSREALEQGRQVHA-----YTIKANLESDEFVKNGLIDMYAKS 379

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292
            LL +A+ + +    ++  S   ++ G  +  + +   E   +  + L P   L++V L
Sbjct: 380 NLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSL 438



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 167/328 (50%), Gaps = 13/328 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG++VHA  I   L  +  V++ L+DMY K  L+ ++ +VFD M ++N +S +A+++G
Sbjct: 347 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 406

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y         + +F EM        L +F  +L   A L AL L K++H   I+     D
Sbjct: 407 YSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLD 466

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +   SAL+D+Y+KC  V  A  +F +M  ++++ WN+M  G+ Q+   EEAL+++  +  
Sbjct: 467 LFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQF 526

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLL 236
              KP+  +F  +++A S++  +  G++    + K      P +   N +VD+  + G +
Sbjct: 527 SRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVT--NALVDMYAKCGSI 584

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDN 294
           EEA  +  N+    D   W  ++        A  A  + +++M+  ++P+ ++++V + +
Sbjct: 585 EEARKMF-NSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPN-YVTFVAVLS 642

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
                GR  D       M   G+K  PG
Sbjct: 643 ACSHAGRVEDGLNHFNSMPGFGIK--PG 668



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 110/205 (53%), Gaps = 5/205 (2%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           K +H ++I  GL  +  + + L+++  K   VD +  VFDKM  KN ++ S+++  Y Q 
Sbjct: 47  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 106

Query: 66  GDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
           G  E  + +F ++     E  + F    V+RAC  L  +  G ++H   +R    +DV +
Sbjct: 107 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 166

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            ++L+D Y+K G ++ A  +F Q+  +  +TW ++I+G+ + GR   +L +F  M E   
Sbjct: 167 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 226

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK 205
            PD      VLSACS +  ++ G++
Sbjct: 227 VPDRYVVSSVLSACSMLEFLEGGKQ 251


>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
 gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
          Length = 554

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/385 (36%), Positives = 213/385 (55%), Gaps = 53/385 (13%)

Query: 2   LKQGKEVHAKVITLGL-CGNVVVESSLVDMY-----GKCGLVDESHRVFDKMLKKNSVSS 55
           L++G++VH+KV+T G    NV + S LV+ Y     G+   +  + +VFD M ++N V  
Sbjct: 142 LREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSERNVVCW 201

Query: 56  SALLQGYCQTGDFESVIRIFREMEEIDLFSFGIV-------------------------- 89
           +++L GY + G+ +   RIF EM E ++ S+  +                          
Sbjct: 202 NSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGVE 261

Query: 90  ---------LRACAGLAALRLGKEVHCQYIRRSGCKD-----VIIESALVDLYAKCGCVD 135
                    L ACA L  L++G  +H  YI+ +         V + +AL+ +YA CG +D
Sbjct: 262 LDQVVLLAALTACAELGDLKMGMWIHS-YIQDTFVGSNQRVLVSLNNALIHMYASCGMID 320

Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT---KPDHVSFIGVLS 192
            A+++F  MP R+ ++W S+I+ FA+ G  +  L IF  M   GT   +PD ++FIGVL 
Sbjct: 321 EAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIGVLC 380

Query: 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252
           ACSH GL+D GR+ F  M + + IKP+IEHY CMVDLL RAG L+EA+ LI     + ++
Sbjct: 381 ACSHAGLVDEGRQLFKDMIQRWGIKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKPNN 440

Query: 253 SLWEVLLGACTTFRNAHVAERVAKKIM-ELKPDCHLSYV-LLDNVYRAVGRWNDAFKIRT 310
           ++W  LLG C  +RNA +A  V++K++ E  PD    Y+ LL  VY +  +W D   +R 
Sbjct: 441 AVWGALLGGCRFYRNAELASLVSQKLVAEPDPDKAAGYLSLLAQVYASAEKWQDVATVRQ 500

Query: 311 LMKYSGVKKMPGKSWIEANSKLNHD 335
            M   GVKK  G+SW++ N ++ HD
Sbjct: 501 KMVAMGVKKPAGQSWVQIN-EVFHD 524



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 41/206 (19%)

Query: 39  ESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACA 94
            +H VF  +   +++  + +++ + ++      I+ F +M       D  ++  +L AC 
Sbjct: 78  SAHYVFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACT 137

Query: 95  GLAALRLGKEVHCQYIRRSG-CKDVIIESALVDLYAKC-----GCVDFAHQIFLQMPVRN 148
              +LR G++VH + +       +V + S LV+ YA         +  A ++F  M  RN
Sbjct: 138 SSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSERN 197

Query: 149 LITWNS-------------------------------MISGFAQNGRGEEALRIFDDMTE 177
           ++ WNS                               MISG+A+NG+ ++AL +FD M +
Sbjct: 198 VVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRK 257

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRG 203
            G + D V  +  L+AC+ +G +  G
Sbjct: 258 AGVELDQVVLLAALTACAELGDLKMG 283


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/322 (40%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQGYCQTGDFESVIRIFREM 78
           NVV  +SLV  Y + GLVDE+ RVF+ M  KKNSVS +A++  + +   F     +FR M
Sbjct: 165 NVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRM 224

Query: 79  E-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVIIESALVDLYAKCG 132
                 E+D F    +L AC G+ AL  G  +H +Y+ ++G   D  + + ++D+Y KCG
Sbjct: 225 RVEKKMELDRFVAATMLSACTGVGALEQGMWIH-KYVEKTGIVLDSKLATTIIDMYCKCG 283

Query: 133 CVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDHVSFIGVL 191
           C+D A  +F  + V+ + +WN MI GFA +G+GE+A+R+F +M E     PD ++F+ VL
Sbjct: 284 CLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVL 343

Query: 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
           +AC+H GL++ G  +F  M   + I P  EHY CMVDLL RAG LEEA+ +I+      D
Sbjct: 344 TACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPD 403

Query: 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311
           +++   LLGAC    N  + E V  +++EL P+    YV+L N+Y + G+W     +R L
Sbjct: 404 AAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKL 463

Query: 312 MKYSGVKKMPGKSWIEANSKLN 333
           M   GVKK PG S IE    +N
Sbjct: 464 MDDRGVKKEPGFSMIEMEGVVN 485



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 38/209 (18%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG  +H  V   G+  +  + ++++DMY KCG +D++  VF  +  K   S + ++ G
Sbjct: 250 LEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGG 309

Query: 62  YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           +   G  E  IR+F+EMEE      D  +F  VL ACA    +  G      Y R     
Sbjct: 310 FAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEG----WYYFRY---- 361

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
                  +VD++     +D         P +    +  M+   A+ GR EEA ++ D+M 
Sbjct: 362 -------MVDVHG----ID---------PTKE--HYGCMVDLLARAGRLEEAKKVIDEMP 399

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
                PD      +L AC   G ++ G +
Sbjct: 400 ---MSPDAAVLGALLGACRIHGNLELGEE 425



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 109/227 (48%), Gaps = 17/227 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDM--YGKCGLVDESHRVFDKMLKKNSVSSSALL 59
           + + K+ H+ ++ LGL  N    S +       K G ++ + ++F  +   ++   + L 
Sbjct: 15  MAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYNTLF 74

Query: 60  QGYCQTGDFESVIRIF-----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
           + +       S+  +F     +     + F+F  ++RAC         K++H   ++   
Sbjct: 75  KAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACK---LEEEAKQLHAHVLKFGF 131

Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
             D    + L+ +Y   G +D A ++F  M   N+++W S++SG++Q G  +EA R+F+ 
Sbjct: 132 GGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFEL 191

Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221
           M     K + VS+  ++ AC   G  +R R+ FA + +  R++ K+E
Sbjct: 192 MP---CKKNSVSWNAMI-ACFVKG--NRFREAFA-LFRRMRVEKKME 231


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 200/336 (59%), Gaps = 5/336 (1%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+  K++H  +I  G+  ++   S+L+D+Y KC  V ++  VF++M +K+ V  +A+  G
Sbjct: 356 LELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFG 415

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q  + E  ++++  ++    + + F+F  ++ A + LA+LR G++ H Q ++      
Sbjct: 416 YTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFC 475

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
             + +ALVD+YAKCG ++ A ++F     R+++ WNSMIS  AQ+G  EEAL +F +M +
Sbjct: 476 PFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMK 535

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
            G +P++V+F+ VLSACSH G ++ G  HF SM   + IKP  EHY C+V LLGR+G L 
Sbjct: 536 EGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLF 594

Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
           EA+  IE       + +W  LL AC    N  + +  A+  +   P    SY+LL N++ 
Sbjct: 595 EAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFA 654

Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           + G W D  K+R  M  S V K PG+SWIE N+K+N
Sbjct: 655 SKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVN 690



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 179/346 (51%), Gaps = 15/346 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           +++G ++H  V+  G   +V V +SL+D Y K G ++ +  VFD++L+K +V+ + ++ G
Sbjct: 53  VEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAG 112

Query: 62  YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y + G     + +F +M E     D +    VL AC+ L  L  GK++H   +RR    D
Sbjct: 113 YTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD 172

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + + L+D Y KC  V    ++F QM V+N+I+W +MISG+ QN    EA+++F +M  
Sbjct: 173 VSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNR 232

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRA 233
            G KPD  +   VL++C  +  +++GR+  A     Y IK  +E      N ++D+  ++
Sbjct: 233 LGWKPDGFACTSVLTSCGSLEALEQGRQVHA-----YTIKANLESNEFVKNGLIDMYAKS 287

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293
            LL +A+ + +    ++  S   ++ G  +  + +   E   +  + L P   L++V L 
Sbjct: 288 NLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL 347

Query: 294 NVYRAVGRWNDAFKIRTLMKYSGVK--KMPGKSWIEANSKLNHDLD 337
            V  ++     + +I  L+   GV      G + I+  SK ++  D
Sbjct: 348 GVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKD 393



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 166/328 (50%), Gaps = 13/328 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG++VHA  I   L  N  V++ L+DMY K  L+ ++ +VFD M ++N +S +A+++G
Sbjct: 255 LEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEG 314

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y         + +F EM        L +F  +L   A L AL L K++H   I+     D
Sbjct: 315 YSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLD 374

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           +   SAL+D+Y+KC  V  A  +F +M  ++++ WN+M  G+ Q+   EEAL+++  +  
Sbjct: 375 LFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQF 434

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGRAGLL 236
              KP+  +F  +++A S++  +  G++    + K      P +   N +VD+  + G +
Sbjct: 435 SRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVT--NALVDMYAKCGSI 492

Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDN 294
           EEA  +  N+    D   W  ++        A  A  + +++M+  ++P+ ++++V + +
Sbjct: 493 EEARKMF-NSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPN-YVTFVAVLS 550

Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
                G   D       M   G+K  PG
Sbjct: 551 ACSHAGXVEDGLNHFNSMPGFGIK--PG 576



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 69/127 (54%)

Query: 79  EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138
           E  + F    V+RAC  L  +  G ++H   +R    +DV + ++L+D Y+K G ++ A 
Sbjct: 33  EHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVAR 92

Query: 139 QIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198
            +F Q+  +  +TW ++I+G+ + GR   +L +F  M E    PD      VLSACS + 
Sbjct: 93  LVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLE 152

Query: 199 LIDRGRK 205
            ++ G++
Sbjct: 153 FLEGGKQ 159


>gi|414591914|tpg|DAA42485.1| TPA: pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 548

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 135/331 (40%), Positives = 196/331 (59%), Gaps = 18/331 (5%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           + VV +SLV  Y  CG    +  VF ++  ++ VS +  +      GD  + + +FREM+
Sbjct: 98  HTVVANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQ 157

Query: 80  E------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-----CKDVIIESALVDLY 128
                   D ++   VL ACA   AL LG   H   +R  G      +DV+I ++LVDLY
Sbjct: 158 RDRPDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLY 217

Query: 129 AKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE-GGTKPDHVSF 187
            KCG V+ A Q+F +M  R+L +WN+M+   A +GR +++L +FD MT   G  P+ ++F
Sbjct: 218 GKCGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITF 277

Query: 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
           + VLSAC+H GL+D GR++FA+M  E+ I+P+IEHY CMVD+L RAG +EEA  ++   +
Sbjct: 278 VAVLSACNHGGLVDEGRRYFAAMVSEHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMN 337

Query: 248 CRHDSSLWEVLLGACTTFRNA--HVAERVAKKIMELKPDCHLS--YVLLDNVYRAVGRWN 303
           CR DS +W  LL AC   RNA   ++E +AK  +++ PD  +S  YVLL  VY +  RWN
Sbjct: 338 CRPDSIIWRSLLDACCK-RNAGLELSEAMAKLALDV-PDDAVSGVYVLLSRVYASAQRWN 395

Query: 304 DAFKIRTLMKYSGVKKMPGKSWIEANSKLNH 334
           D   IR LM   G KK PG S IE +  ++ 
Sbjct: 396 DVGMIRQLMSQEGFKKEPGFSSIEMDGSVHQ 426


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/313 (40%), Positives = 189/313 (60%), Gaps = 5/313 (1%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           NVV  S++V  Y K G ++ +  +FDKM  KN V+ + ++    Q G      R+F EM+
Sbjct: 331 NVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMK 390

Query: 80  E----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
           E    +D+ +   +L ACA    L LGK +H    +R   +  ++ +AL+D++ KCGCV+
Sbjct: 391 EAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVN 450

Query: 136 FAHQIF-LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
            A  IF  ++  ++ ++WN +I GFA +G GE+AL +F  M + G  PD V+ I VLSAC
Sbjct: 451 RADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSAC 510

Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
           +HMGL++ GR+ FA+M  +Y IKP+IEHY CMVDLLGR GL++EA  +I++     +  +
Sbjct: 511 THMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVI 570

Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
           W  LL AC   +N   AE  A ++  L+P    +Y +L N+Y   G+W+D  K R  MK 
Sbjct: 571 WGSLLSACRLHKNVEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKG 630

Query: 315 SGVKKMPGKSWIE 327
           +G +K  G SWIE
Sbjct: 631 TGSQKTAGSSWIE 643



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 128/255 (50%), Gaps = 5/255 (1%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
           +  H  V  LG   +  V ++L+D Y K   + ++ +VFD+M  ++ VS +  +    + 
Sbjct: 224 RAAHTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRK 283

Query: 66  GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV 125
           G+ ++   +F EM E D  S+  +L    G A     +E    + R  G ++V+  S +V
Sbjct: 284 GEVDAARSMFDEMPEKDTVSWNTMLD---GYAKAGEAEEAFELFQRMPG-RNVVSWSTVV 339

Query: 126 DLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185
             Y K G ++ A  IF +MP +NL+TW  M+S  AQ G   EA R+F +M E   + D V
Sbjct: 340 SAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVV 399

Query: 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245
           + + +L+AC+  G +  G++      ++ ++       N ++D+  + G +  A+ + + 
Sbjct: 400 AVVSILAACAESGCLALGKR-IHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDT 458

Query: 246 ADCRHDSSLWEVLLG 260
                DS  W +++G
Sbjct: 459 EIVEKDSVSWNIIIG 473



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 120/269 (44%), Gaps = 18/269 (6%)

Query: 1   RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSA--- 57
           RL+  +E+HA+V+  GL  +    S L+  Y     V     VF          S+A   
Sbjct: 116 RLRHVQELHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSAAAAPPFAPSTALLA 175

Query: 58  --LLQGYCQTGDFESVIRIFREME--EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113
             LL+ Y       + + +F +M   + D F++  +++A A  A +   +  H    +  
Sbjct: 176 NTLLRAYALNSLPHAALAVFVDMPLRQRDTFTYSFLIKALA-TAGVTPVRAAHTHVFKLG 234

Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
             +D  + +AL+D Y+K   +  A ++F +M  R++++WN+ ++   + G  + A  +FD
Sbjct: 235 SVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFD 294

Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
           +M E     D VS+  +L   +  G  +   + F  M         +  ++ +V    + 
Sbjct: 295 EMPEK----DTVSWNTMLDGYAKAGEAEEAFELFQRMPGR-----NVVSWSTVVSAYCKK 345

Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGAC 262
           G +E A  + +    ++  + W +++ AC
Sbjct: 346 GDMEMARVIFDKMPAKNLVT-WTIMVSAC 373



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 7/164 (4%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFD-KMLKKNSVSSSALLQ 60
           L  GK +H  V    L  + +V ++L+DM+ KCG V+ +  +FD ++++K+SVS + ++ 
Sbjct: 414 LALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIG 473

Query: 61  GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
           G+   G  E  + +F +M++     D  +   VL AC  +  +  G+          G K
Sbjct: 474 GFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIK 533

Query: 117 DVIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
             I     +VDL  + G +  A  +   MP   N + W S++S 
Sbjct: 534 PEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSA 577


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/332 (36%), Positives = 194/332 (58%), Gaps = 17/332 (5%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK+VH  +    +  N+ V ++L+DMY KCG ++ ++ VF  M+ K+ +S + ++  
Sbjct: 368 LDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI-- 425

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
               G+ +            D  +   VL ACA L+AL  GKE+H   +R     D  + 
Sbjct: 426 ----GELKP-----------DSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVA 470

Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
           +ALVDLY KCG +  A  +F  +P ++L++W  MI+G+  +G G EA+  F++M + G +
Sbjct: 471 NALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIE 530

Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
           PD VSFI +L ACSH GL+++G + F  M  ++ I+PK+EHY CMVDLL R G L +A  
Sbjct: 531 PDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYE 590

Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
            +E      D+++W  LL  C  + +  +AE+VA+++ EL+P+    YVLL N+Y    +
Sbjct: 591 FMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEK 650

Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           W +  ++R  +   G++K PG SWIE   K+N
Sbjct: 651 WEEVKRLREKIGKQGLRKNPGCSWIEIKGKVN 682



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 141/266 (53%), Gaps = 31/266 (11%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L  GK VH+  I       +   ++L+DMY KCG +D + RVF+KM ++N VS ++++ G
Sbjct: 267 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326

Query: 62  YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
           Y + G  +  I++ ++ME+    +D+ +   +L ACA   +L  GK+VH  YI+ +  + 
Sbjct: 327 YTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVH-DYIKANNMES 385

Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
           ++ + +AL+D+YAKCG ++ A+ +F  M V+++I+WN+MI                    
Sbjct: 386 NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI-------------------- 425

Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            G  KPD  +   VL AC+ +  ++RG++ H   +   Y     +   N +VDL  + G+
Sbjct: 426 -GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVA--NALVDLYVKCGV 482

Query: 236 LEEAETLIENADCRHDSSLWEVLLGA 261
           L  A  L +    + D   W V++  
Sbjct: 483 LGLARLLFDMIPSK-DLVSWTVMIAG 507



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 38  DESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRAC 93
           + +  +FDK+  ++ +S ++++ GY   G  E  + I+++M     ++DL +   VL  C
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 94  AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
           A    L LGK VH   I+ S  + +   + L+D+Y+KCG +D A ++F +M  RN+++W 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
           SMI+G+ ++GR + A+++   M + G K D V+   +L AC+  G +D G K      K 
Sbjct: 322 SMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNG-KDVHDYIKA 380

Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
             ++  +   N ++D+  + G +E A ++      + D   W  ++G
Sbjct: 381 NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMIG 426



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 55/255 (21%)

Query: 62  YCQTGDFESVIRI--FREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
           +CQ GD E+ + +    +  E++  ++G VL+ CAGL +   GK+VH      S   D  
Sbjct: 76  FCQLGDLENAMELICMCQKSELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGA 135

Query: 120 IESALVDLYAKCGCV-----------------------------DF-------------- 136
           +   LV  YA CG +                             DF              
Sbjct: 136 LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195

Query: 137 --------AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI 188
                   A ++F ++  R++I+WNSMISG+  NG  E  L I+  M   G   D  + I
Sbjct: 196 IEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATII 255

Query: 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADC 248
            VL  C++ G +  G K   S+  +   + +I   N ++D+  + G L+ A  + E    
Sbjct: 256 SVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 249 RHDSSLWEVLLGACT 263
           R+  S W  ++   T
Sbjct: 315 RNVVS-WTSMIAGYT 328


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 213/375 (56%), Gaps = 45/375 (12%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           ++ GK +H++ + LG   ++ V + L+D+Y + G V  + ++FD M +K+ VS +A+L  
Sbjct: 87  IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTC 146

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGI--------------------------------- 88
           Y + G+ ++   +F  MEE D   + +                                 
Sbjct: 147 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 206

Query: 89  --VLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMP 145
             VL AC  L AL  G+ VH  YI  +G + +V + +ALVD+Y+KCG ++ A  +F ++ 
Sbjct: 207 LSVLSACGQLGALESGRWVH-SYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID 265

Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
            ++++ WNSMI G+A  G  +EAL++F  M   G  P +++FIG+LSAC H G +  G  
Sbjct: 266 DKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWD 325

Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
            F  M  EY I+PKIEHY CMV+LLGRAG +E+A  L++N +   D  LW  LLGAC   
Sbjct: 326 IFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGAC--- 382

Query: 266 RNAHVAERVAKKIMELKPDCHL----SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMP 321
              H    + +KI+EL  D +L    +Y+LL N+Y AVG W+   ++RT+MK SGVKK P
Sbjct: 383 -RLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEP 441

Query: 322 GKSWIEANSKLNHDL 336
           G S IE N+K++  L
Sbjct: 442 GCSSIEVNNKVHEFL 456



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 118/264 (44%), Gaps = 41/264 (15%)

Query: 31  YGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSF 86
           Y   G +D S  +F +    +    +A++ G+   G  E  +  + +M     E + F+F
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 87  GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
             +L+ C     +  GK +H Q ++     D+ + + L+D+YA+ G V  A Q+F  MP 
Sbjct: 79  SSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134

Query: 147 RNLIT-------------------------------WNSMISGFAQNGRGEEALRIFDDM 175
           ++L++                               WN MI G+ QNG   EAL +F  M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194

Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
            +   KP+ V+ + VLSAC  +G ++ GR    S  +   I+  +     +VD+  + G 
Sbjct: 195 LKAKAKPNEVTVLSVLSACGQLGALESGR-WVHSYIENNGIQFNVHVGTALVDMYSKCGS 253

Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
           LE+A  + +  D + D   W  ++
Sbjct: 254 LEDARLVFDKIDDK-DVVAWNSMI 276


>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
          Length = 722

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 202/358 (56%), Gaps = 37/358 (10%)

Query: 7   EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
           E+H  V+ LG C ++ V ++L+ +Y   G+   +H+VF++M+  + VS S L+  + + G
Sbjct: 366 EIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAG 425

Query: 67  DFESVIRIFREMEEIDLFSFG-----------------------------------IVLR 91
           + E   ++F EM E D+ S+                                    IV+ 
Sbjct: 426 ELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVIS 485

Query: 92  ACAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
           AC  L  L  G EVH +YI  +G   ++ + +AL+D+YAKCGC+D A Q+F  M  ++LI
Sbjct: 486 ACTSLGDLETGFEVH-RYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLI 544

Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
           TWNSMIS  A +G  E+A R+F  M   G +PD V+F+ +L+A +H G +D G   F SM
Sbjct: 545 TWNSMISACANHGNAEDAFRVFTLMLXSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESM 604

Query: 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHV 270
            ++Y ++  +EHY CMVD+LGRAG LEEA  LI +     +  +W  LL AC  + +  +
Sbjct: 605 QRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEM 664

Query: 271 AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
            ERV KK++ELKPD    Y+LL ++Y A GR  +A ++R  M  +G KK  G SW+ A
Sbjct: 665 GERVLKKLIELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWVGA 722



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 158/351 (45%), Gaps = 46/351 (13%)

Query: 6   KEVHAKVITLGLCGNVVVESSLVDMYG--KCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
           K +HA+     L  + +V + +         G +  + R+F ++ + N+   + L++GY 
Sbjct: 258 KLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYS 317

Query: 64  QTGDFESVIRIFREME----EIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGC 115
           ++      +++F +M     + D F+F  +L    R    L  +    E+H   ++   C
Sbjct: 318 KSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFC 377

Query: 116 KDVIIESALVDLYA-------------------------------KCGCVDFAHQIFLQM 144
             + + +AL+ LYA                               + G ++ A Q+F +M
Sbjct: 378 FHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFDEM 437

Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
           P R++++W  M+SG+AQ  R  EAL +F +M + G +PD V+ + V+SAC+ +G ++ G 
Sbjct: 438 PERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVISACTSLGDLETGF 497

Query: 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264
           +       E      +   N ++D+  + G ++ A  +  N + R     W  ++ AC  
Sbjct: 498 E-VHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNME-RKSLITWNSMISACAN 555

Query: 265 FRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
             NA  A RV   ++   ++PD  ++++ L   Y   G  +D + +   M+
Sbjct: 556 HGNAEDAFRVFTLMLXSGIRPDG-VTFLALLTAYTHKGWVDDGYGLFESMQ 605



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+ G EVH  +   G    V + ++L+DMY KCG +D + +VF+ M +K+ ++ ++++  
Sbjct: 493 LETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISA 552

Query: 62  YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQY-IRRSGCKDVII 120
               G+ E   R+F  M    +   G+   A   L A      V   Y +  S  +D  +
Sbjct: 553 CANHGNAEDAFRVFTLMLXSGIRPDGVTFLAL--LTAYTHKGWVDDGYGLFESMQRDYGV 610

Query: 121 ESA------LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFD 173
           E+       +VD+  + G ++ A+++   M +  N + W ++++     G  E   R+  
Sbjct: 611 EAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLK 670

Query: 174 DMTEGGTKPD 183
            + E   KPD
Sbjct: 671 KLIE--LKPD 678


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/322 (40%), Positives = 200/322 (62%), Gaps = 13/322 (4%)

Query: 20  NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
           N+V  S+++  Y + G ++E+ ++F+ M  +N VS +A++ GY Q   +   I +FR+M+
Sbjct: 223 NLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQ 282

Query: 80  --------EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAK 130
                   ++ L S   VL ACA L AL LGK +H ++IRR+  +  + + +AL D+YAK
Sbjct: 283 HEGGLAPNDVTLVS---VLSACAHLGALDLGKWIH-RFIRRNKIEVGLFLGNALADMYAK 338

Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
           CGCV  A  +F +M  R++I+W+ +I G A  G   EA   F +M E G +P+ +SF+G+
Sbjct: 339 CGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGL 398

Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
           L+AC+H GL+D+G ++F  M + Y I PKIEHY C+VDLL RAG L++AE+LI +   + 
Sbjct: 399 LTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQP 458

Query: 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310
           +  +W  LLG C  +++A   ERV  +I+EL  +   S V L NVY ++GR +DA   R 
Sbjct: 459 NVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRL 518

Query: 311 LMKYSGVKKMPGKSWIEANSKL 332
            M+ +   K PG SWIE N+ +
Sbjct: 519 RMRDNKSMKTPGCSWIEINNSV 540



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 160/358 (44%), Gaps = 78/358 (21%)

Query: 2   LKQGKEVHAKVITLGLCG--NVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSAL 58
           ++Q  E+ A++I   +      ++    + +    G +  S  +F+  L   N  + +AL
Sbjct: 37  MRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNAL 96

Query: 59  LQGYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
           L+ + Q   + + I  F            D ++F  VL+ACAGLA +  G++VHC ++ +
Sbjct: 97  LKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHC-FVTK 155

Query: 113 SGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVR------------------------ 147
            GC+ ++ + ++LVDLY K GC   A ++F +M VR                        
Sbjct: 156 YGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMV 215

Query: 148 -------NLITWNSMISGFAQNGRGEEALRIFDDMT------------------------ 176
                  NL++W++MISG+A+ G  EEA ++F++M                         
Sbjct: 216 FDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAI 275

Query: 177 --------EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
                   EGG  P+ V+ + VLSAC+H+G +D G K      +  +I+  +   N + D
Sbjct: 276 ELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLG-KWIHRFIRRNKIEVGLFLGNALAD 334

Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
           +  + G + EA+ +      R D   W +++     +  A+ A     +++E  L+P+
Sbjct: 335 MYAKCGCVLEAKGVFHEMHER-DVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPN 391


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/333 (36%), Positives = 201/333 (60%), Gaps = 5/333 (1%)

Query: 5   GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
           G+++HA  +      +V V S+L+DMY +C  +D +  VFD+++ KN VS +AL+ G+ +
Sbjct: 180 GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFAR 239

Query: 65  TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
             D E+ +  F EM+        F++  +  A A + AL  G+ VH   I+        +
Sbjct: 240 KADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFV 299

Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
            + ++ +YAK G +  A ++F +M  R+L+TWN+M++  AQ G G+EA+  F+++ + G 
Sbjct: 300 GNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGI 359

Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
           + + ++F+ VL+ACSH GL+  G KH+  M K+Y ++P+I+HY   VDLLGRAGLL+EA 
Sbjct: 360 QLNQITFLSVLTACSHGGLVKEG-KHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEAL 418

Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
             +        +++W  LLGAC   +NA + +  A  + EL PD     VLL N+Y + G
Sbjct: 419 IFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTG 478

Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
           +WNDA ++R +MK +GVKK P  SW++  + ++
Sbjct: 479 KWNDAARVRKMMKATGVKKEPACSWVQIENSVH 511



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 140/270 (51%), Gaps = 10/270 (3%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L   + +HA +    L G+  + +SL+ MY KCG V ++  VFDKM  ++ VS + L+ G
Sbjct: 76  LAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAG 135

Query: 62  YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
           Y Q       I +  +M         F+F  +L+A        +G+++H   ++ +  +D
Sbjct: 136 YAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDED 195

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
           V + SAL+D+YA+C  +D A  +F ++  +N ++WN++I+GFA+   GE  L  F +M  
Sbjct: 196 VYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQR 255

Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGL 235
            G    H ++  + SA + +G +++GR   A + K  +   K+  +  N M+ +  ++G 
Sbjct: 256 NGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQ---KLTAFVGNTMLGMYAKSGS 312

Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTF 265
           + +A  + +  D R D   W  +L A   +
Sbjct: 313 MVDARKVFDRMDKR-DLVTWNTMLTALAQY 341



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 118/287 (41%), Gaps = 26/287 (9%)

Query: 40  SHRVFDKMLKKNSVSSSALLQ-GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAA 98
           +HR        +  SS+ L +      G+     R++             ++ ACA    
Sbjct: 27  AHRAVPISFPSSPASSTGLRELDLLHAGELAPTPRLYHS-----------IIAACAQFKN 75

Query: 99  LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158
           L   + +H    R     D  + ++L+ +Y KCG V  A  +F +MP R++++W  +I+G
Sbjct: 76  LAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAG 135

Query: 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP 218
           +AQN    EA+ +  DM     +P+  +F  +L A    G    G +  A   K Y    
Sbjct: 136 YAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVK-YNWDE 194

Query: 219 KIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
            +   + ++D+  R   ++ A  + +    +++ S W  L+     F      E    K 
Sbjct: 195 DVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVS-WNALIAG---FARKADGETTLMKF 250

Query: 279 MELKPD----CHLSYVLLDNVYRAV-----GRWNDAFKIRTLMKYSG 316
            E++ +     H +Y  + + +  +     GRW  A  I++  K + 
Sbjct: 251 AEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTA 297



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 15/189 (7%)

Query: 2   LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
           L+QG+ VHA +I  G      V ++++ MY K G + ++ +VFD+M K++ V+ + +L  
Sbjct: 278 LEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTA 337

Query: 62  YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
             Q G  +  +  F E+     +++  +F  VL AC+    ++ GK         +   +
Sbjct: 338 LAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPE 397

Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDMT 176
           +    + VDL  + G +  A     +MP+      W +++           A R+  +  
Sbjct: 398 IDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLG----------ACRMHKNAK 447

Query: 177 EGGTKPDHV 185
            G    DHV
Sbjct: 448 MGQYAADHV 456


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.138    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,145,731,587
Number of Sequences: 23463169
Number of extensions: 204046457
Number of successful extensions: 541300
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8603
Number of HSP's successfully gapped in prelim test: 2657
Number of HSP's that attempted gapping in prelim test: 421243
Number of HSP's gapped (non-prelim): 49981
length of query: 337
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 194
effective length of database: 9,003,962,200
effective search space: 1746768666800
effective search space used: 1746768666800
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 77 (34.3 bits)