BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037592
(337 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540
OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1
Length = 609
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/330 (61%), Positives = 256/330 (77%), Gaps = 1/330 (0%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
RLKQGKE+H K+IT G+ NVVVESSL+DMYGKCG V E+ +VF+ M KKNSVS SALL
Sbjct: 280 RLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLG 339
Query: 61 GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
GYCQ G+ E I IFREMEE DL+ FG VL+ACAGLAA+RLGKE+H QY+RR +VI+
Sbjct: 340 GYCQNGEHEKAIEIFREMEEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIV 399
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
ESAL+DLY K GC+D A +++ +M +RN+ITWN+M+S AQNGRGEEA+ F+DM + G
Sbjct: 400 ESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGI 459
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
KPD++SFI +L+AC H G++D GR +F M K Y IKP EHY+CM+DLLGRAGL EEAE
Sbjct: 460 KPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAE 519
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNA-HVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
L+E A+CR+D+SLW VLLG C +A VAER+AK++MEL+P H+SYVLL N+Y+A+
Sbjct: 520 NLLERAECRNDASLWGVLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSNMYKAI 579
Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
GR DA IR LM GV K G+SWI+A+
Sbjct: 580 GRHGDALNIRKLMVRRGVAKTVGQSWIDAH 609
Score = 124 bits (311), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 161/329 (48%), Gaps = 17/329 (5%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
++ G+ H VIT G N + S+L +YG ++ RVFD+M + + + +A+L
Sbjct: 179 VRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSA 238
Query: 62 YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
+ + +E + +F M D +FG VL AC L L+ GKE+H + I
Sbjct: 239 FSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGS 298
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
+V++ES+L+D+Y KCG V A Q+F M +N ++W++++ G+ QNG E+A+ IF +M
Sbjct: 299 NVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREME 358
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
E D F VL AC+ + + G++ + I + ++DL G++G +
Sbjct: 359 E----KDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVE-SALIDLYGKSGCI 413
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDN 294
+ A + R+ + W +L A A +++ +KPD ++S++ +
Sbjct: 414 DSASRVYSKMSIRNMIT-WNAMLSALAQNGRGEEAVSFFNDMVKKGIKPD-YISFIAILT 471
Query: 295 VYRAVGRWNDAFKIRTLMKYS-GVKKMPG 322
G ++ LM S G+K PG
Sbjct: 472 ACGHTGMVDEGRNYFVLMAKSYGIK--PG 498
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 131/264 (49%), Gaps = 8/264 (3%)
Query: 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQGY 62
G + HA V+ GL + V +SL+ +Y K G + E+ RVFD K+++S ++++ GY
Sbjct: 79 HGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGY 138
Query: 63 CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
+ + +F EM L F+ ++AC+ L +RLG+ H I +
Sbjct: 139 VTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNH 198
Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
I S L LY A ++F +MP ++I W +++S F++N EEAL +F M G
Sbjct: 199 FISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRG 258
Query: 179 -GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G PD +F VL+AC ++ + +G++ + I + + ++D+ G+ G +
Sbjct: 259 KGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN-GIGSNVVVESSLLDMYGKCGSVR 317
Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
EA + N + +S W LLG
Sbjct: 318 EARQVF-NGMSKKNSVSWSALLGG 340
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 125/320 (39%), Gaps = 52/320 (16%)
Query: 52 SVSSSALLQG-----YCQTGDFESVIRIFREMEEIDLFS----FGIVLRACAGLAALRLG 102
S+SSSA + C+ G IRI ++ + + +L+ C + + G
Sbjct: 21 SISSSAPTKQSRILELCKLGQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHG 80
Query: 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGC-VDFAHQIFLQMPVRNLITWNSMISGFAQ 161
+ H ++ D + ++L+ LY K G + ++F V++ I+W SM+SG+
Sbjct: 81 IQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVT 140
Query: 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR-------------KHFA 208
+AL +F +M G + + + ACS +G + GR HF
Sbjct: 141 GKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFI 200
Query: 209 SMTKEY------------RI-----KPKIEHYNCMVDLLGRAGLLEEAETLI----ENAD 247
S T Y R+ +P + + ++ + L EEA L
Sbjct: 201 SSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKG 260
Query: 248 CRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDA 305
D S + +L AC R + + K++ + + + LLD +Y G +A
Sbjct: 261 LVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLD-MYGKCGSVREA 319
Query: 306 FKIRTLMKYSGVKKMPGKSW 325
++ ++G+ K SW
Sbjct: 320 RQV-----FNGMSKKNSVSW 334
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 285 bits (730), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 219/368 (59%), Gaps = 42/368 (11%)
Query: 2 LKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFD--------------- 45
+K G+EVH +V+ L ++++ ++ VDMY KC + E+ +FD
Sbjct: 269 IKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMIS 328
Query: 46 ----------------KMLKKNSVSSSALLQGYCQTGDFESVIRIF----REMEEIDLFS 85
KM ++N VS +AL+ GY Q G+ E + +F RE +S
Sbjct: 329 GYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYS 388
Query: 86 FGIVLRACAGLAALRLGKEVHCQYIR-----RSGCKD-VIIESALVDLYAKCGCVDFAHQ 139
F +L+ACA LA L LG + H ++ +SG +D + + ++L+D+Y KCGCV+ +
Sbjct: 389 FANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYL 448
Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
+F +M R+ ++WN+MI GFAQNG G EAL +F +M E G KPDH++ IGVLSAC H G
Sbjct: 449 VFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGF 508
Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
++ GR +F+SMT+++ + P +HY CMVDLLGRAG LEEA+++IE + DS +W LL
Sbjct: 509 VEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLL 568
Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
AC RN + + VA+K++E++P YVLL N+Y +G+W D +R M+ GV K
Sbjct: 569 AACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTK 628
Query: 320 MPGKSWIE 327
PG SWI+
Sbjct: 629 QPGCSWIK 636
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 35/278 (12%)
Query: 8 VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
VHA VI G + +++ L+D Y KCG +++ +VFDKM ++N + ++++ G + G
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 68 FESVIRIFREMEEIDL-----------------------------------FSFGIVLRA 92
+ +FR M E D +SF VL A
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 93 CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152
C+GL + G +VH + DV I SALVD+Y+KCG V+ A ++F +M RN+++W
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221
Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
NS+I+ F QNG EAL +F M E +PD V+ V+SAC+ + I G++ + K
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281
Query: 213 EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH 250
+++ I N VD+ + ++EA + ++ R+
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 142/278 (51%), Gaps = 41/278 (14%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+ +G +VH+ + +V + S+LVDMY KCG V+++ RVFD+M +N VS ++L+
Sbjct: 168 MNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITC 227
Query: 62 YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
+ Q G + +F+ M E D + V+ ACA L+A+++G+EVH + ++ +
Sbjct: 228 FEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRN 287
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI-------------------------- 150
D+I+ +A VD+YAKC + A IF MP+RN+I
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMA 347
Query: 151 -----TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG-R 204
+WN++I+G+ QNG EEAL +F + P H SF +L AC+ + + G +
Sbjct: 348 ERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQ 407
Query: 205 KHFASMTKEYRIKPKIEHY----NCMVDLLGRAGLLEE 238
H + ++ + E N ++D+ + G +EE
Sbjct: 408 AHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEE 445
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 36/211 (17%)
Query: 82 DLFSFGIVLRAC--AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
D F +L +C + L+A+ + + VH I+ ++ I++ L+D Y+KCG ++ Q
Sbjct: 18 DSSPFAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQ 76
Query: 140 IFLQMPVRNLI-------------------------------TWNSMISGFAQNGRGEEA 168
+F +MP RN+ TWNSM+SGFAQ+ R EEA
Sbjct: 77 VFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEA 136
Query: 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
L F M + G + SF VLSACS + +++G + S+ + + + +VD
Sbjct: 137 LCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQ-VHSLIAKSPFLSDVYIGSALVD 195
Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
+ + G + +A+ + + R+ S W L+
Sbjct: 196 MYSKCGNVNDAQRVFDEMGDRNVVS-WNSLI 225
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 281 bits (718), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 213/332 (64%), Gaps = 10/332 (3%)
Query: 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
E+ ++ + C NV ++++ Y +CG + E+ +FDKM K++ VS +A++ GY Q+G
Sbjct: 329 EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSG 388
Query: 67 DFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIR---RSGCKDVI 119
+R+F +ME ++ SF L CA + AL LGK++H + ++ +GC
Sbjct: 389 HSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGC---F 445
Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
+ +AL+ +Y KCG ++ A+ +F +M +++++WN+MI+G++++G GE ALR F+ M G
Sbjct: 446 VGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREG 505
Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
KPD + + VLSACSH GL+D+GR++F +MT++Y + P +HY CMVDLLGRAGLLE+A
Sbjct: 506 LKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDA 565
Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
L++N D+++W LLGA N +AE A KI ++P+ YVLL N+Y +
Sbjct: 566 HNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASS 625
Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
GRW D K+R M+ GVKK+PG SWIE +K
Sbjct: 626 GRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNK 657
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 117/240 (48%), Gaps = 20/240 (8%)
Query: 25 SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLF 84
++++ Y + G VD++ VFD+M +KN VS +ALL Y Q E +F+ E L
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV 220
Query: 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQM 144
S+ +L G + E Q+ +DV+ + ++ YA+ G +D A Q+F +
Sbjct: 221 SWNCLL---GGFVKKKKIVEAR-QFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDES 276
Query: 145 PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
PV+++ TW +M+SG+ QN EEA +FD M E + VS+ +L+ G + R
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPE----RNEVSWNAMLA-----GYVQGER 327
Query: 205 KHFASMTKE-YRIKP--KIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
M KE + + P + +N M+ + G + EA+ L + R D W ++
Sbjct: 328 ---MEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKR-DPVSWAAMIAG 383
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 132/268 (49%), Gaps = 10/268 (3%)
Query: 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
+VV ++++ Y + G +DE+ ++FD+ ++ + +A++ GY Q E +F +M
Sbjct: 249 DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP 308
Query: 80 EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139
E + S+ +L + + KE+ C++V + ++ YA+CG + A
Sbjct: 309 ERNEVSWNAMLAGYVQGERMEMAKEL----FDVMPCRNVSTWNTMITGYAQCGKISEAKN 364
Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
+F +MP R+ ++W +MI+G++Q+G EALR+F M G + + SF LS C+ +
Sbjct: 365 LFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVA 424
Query: 200 IDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
++ G++ + K Y + N ++ + + G +EEA L + + D W +
Sbjct: 425 LELGKQLHGRLVKGGYETGCFVG--NALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTM 481
Query: 259 LGACTTFRNAHVAERVAKKIME--LKPD 284
+ + VA R + + LKPD
Sbjct: 482 IAGYSRHGFGEVALRFFESMKREGLKPD 509
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 132/282 (46%), Gaps = 16/282 (5%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVE--SSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
R Q + ++ L CG+ ++ + + Y + G +E+ RVF +M + +SVS + +
Sbjct: 42 RATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGM 101
Query: 59 LQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
+ GY + G+FE ++F EM E DL S+ ++++ L +E+ R DV
Sbjct: 102 ISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPER----DV 157
Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
+ ++ YA+ GCVD A +F +MP +N ++WN+++S + QN + EEA +F
Sbjct: 158 CSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENW 217
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
VS+ +L I R+ F SM + +N ++ ++G ++E
Sbjct: 218 AL----VSWNCLLGGFVKKKKIVEARQFFDSMNVR-----DVVSWNTIITGYAQSGKIDE 268
Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
A L + + + D W ++ R A + K+ E
Sbjct: 269 ARQLFDESPVQ-DVFTWTAMVSGYIQNRMVEEARELFDKMPE 309
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 6/173 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ GK++H +++ G V ++L+ MY KCG ++E++ +F +M K+ VS + ++ G
Sbjct: 425 LELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAG 484
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y + G E +R F M+ + D + VL AC+ + G++ + G
Sbjct: 485 YSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMP 544
Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEA 168
A +VDL + G ++ AH + MP + W +++ +G E A
Sbjct: 545 NSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 597
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 272 bits (696), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 209/330 (63%), Gaps = 6/330 (1%)
Query: 8 VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
+H +I GL +V V S+L+D++ K G +++ VFD+M+ +++ ++++ G+ Q
Sbjct: 181 LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 240
Query: 68 FESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
+ + +F+ M+ + VLRAC GLA L LG + H ++ +D+I+ +A
Sbjct: 241 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNA 298
Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
LVD+Y KCG ++ A ++F QM R++ITW++MISG AQNG +EAL++F+ M GTKP+
Sbjct: 299 LVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPN 358
Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
+++ +GVL ACSH GL++ G +F SM K Y I P EHY CM+DLLG+AG L++A L+
Sbjct: 359 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418
Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
+C D+ W LLGAC RN +AE AKK++ L P+ +Y LL N+Y +W+
Sbjct: 419 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWD 478
Query: 304 DAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
+IRT M+ G+KK PG SWIE N +++
Sbjct: 479 SVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 121/217 (55%), Gaps = 10/217 (4%)
Query: 27 LVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ----TGDFESVIRIFREMEEID 82
L++MY K L++++H++FD+M ++N +S + ++ Y + E ++ + R+ +
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPN 161
Query: 83 LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
++++ VLR+C G++ +R+ +HC I+ DV + SAL+D++AK G + A +F
Sbjct: 162 VYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFD 218
Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
+M + I WNS+I GFAQN R + AL +F M G + + VL AC+ + L++
Sbjct: 219 EMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 278
Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
G + + K + N +VD+ + G LE+A
Sbjct: 279 GMQAHVHIVK---YDQDLILNNALVDMYCKCGSLEDA 312
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 103/198 (52%), Gaps = 7/198 (3%)
Query: 82 DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQI 140
D ++ +++ C A+ G + C+++ +G + ++ + + L+++Y K ++ AHQ+
Sbjct: 60 DSATYSELIKCCISNRAVHEGNLI-CRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQL 118
Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
F QMP RN+I+W +MIS +++ ++AL + M +P+ ++ VL +C+ M +
Sbjct: 119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178
Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
R + KE ++ + + ++D+ + G E+A ++ + D+ +W ++G
Sbjct: 179 ---RMLHCGIIKE-GLESDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIG 233
Query: 261 ACTTFRNAHVAERVAKKI 278
+ VA + K++
Sbjct: 234 GFAQNSRSDVALELFKRM 251
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 272 bits (695), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 213/335 (63%), Gaps = 6/335 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+++GKE+H ++ GL + V+ SSL+DMYGKCG +DE+ +FDK+++K+ VS ++++
Sbjct: 234 IRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDR 293
Query: 62 YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y ++ + +F E+ E + ++F VL ACA L LGK+VH Y+ R G
Sbjct: 294 YFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVH-GYMTRVGFDP 352
Query: 118 V-IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
S+LVD+Y KCG ++ A + P +L++W S+I G AQNG+ +EAL+ FD +
Sbjct: 353 YSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLL 412
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
+ GTKPDHV+F+ VLSAC+H GL+++G + F S+T+++R+ +HY C+VDLL R+G
Sbjct: 413 KSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRF 472
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
E+ +++I + LW +LG C+T+ N +AE A+++ +++P+ ++YV + N+Y
Sbjct: 473 EQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIY 532
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
A G+W + K+R M+ GV K PG SW E K
Sbjct: 533 AAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRK 567
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 159/333 (47%), Gaps = 40/333 (12%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L++GK+VH + T G +V+ + L+ MY KCG + ++ +VFD+M ++ S + ++ G
Sbjct: 101 LEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNG 160
Query: 62 YCQTGDFESVIRIFREMEEID------------------------------------LFS 85
Y + G E ++F EM E D +F+
Sbjct: 161 YAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFT 220
Query: 86 FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
I + A A + +R GKE+H +R D ++ S+L+D+Y KCGC+D A IF ++
Sbjct: 221 VSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIV 280
Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
+++++W SMI + ++ R E +F ++ +P+ +F GVL+AC+ + + G++
Sbjct: 281 EKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQ 340
Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
MT+ P + +VD+ + G +E A+ +++ + D W L+G C
Sbjct: 341 VHGYMTR-VGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGCA-- 396
Query: 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
+N E + + LK +V NV A
Sbjct: 397 QNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 271 bits (694), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 209/330 (63%), Gaps = 8/330 (2%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQGYC 63
GK++H + + E++L+ YGKCG +D ++F +M ++++V+ ++++ GY
Sbjct: 536 GKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYI 595
Query: 64 QT----GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
+ V + + + +D F + VL A A +A L G EVH +R DV+
Sbjct: 596 HNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVV 655
Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT-EG 178
+ SALVD+Y+KCG +D+A + F MPVRN +WNSMISG+A++G+GEEAL++F+ M +G
Sbjct: 656 VGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDG 715
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
T PDHV+F+GVLSACSH GL++ G KHF SM+ Y + P+IEH++CM D+LGRAG L++
Sbjct: 716 QTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDK 775
Query: 239 AETLIENADCRHDSSLWEVLLGAC--TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
E IE + + +W +LGAC R A + ++ A+ + +L+P+ ++YVLL N+Y
Sbjct: 776 LEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMY 835
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
A GRW D K R MK + VKK G SW+
Sbjct: 836 AAGGRWEDLVKARKKMKDADVKKEAGYSWV 865
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 141/264 (53%), Gaps = 7/264 (2%)
Query: 2 LKQGKEVHAKVITLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
LK+G+EVH VIT GL +V + + LV+MY KCG + ++ RVF M K+SVS ++++
Sbjct: 329 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMIT 388
Query: 61 GYCQTGDFESVIRIFREMEEIDLF--SFGIV--LRACAGLAALRLGKEVHCQYIRRSGCK 116
G Q G F + ++ M D+ SF ++ L +CA L +LG+++H + ++
Sbjct: 389 GLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDL 448
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG-EEALRIFDDM 175
+V + +AL+ LYA+ G ++ +IF MP + ++WNS+I A++ R EA+ F +
Sbjct: 449 NVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNA 508
Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
G K + ++F VLSA S + + G K + + I + N ++ G+ G
Sbjct: 509 QRAGQKLNRITFSSVLSAVSSLSFGELG-KQIHGLALKNNIADEATTENALIACYGKCGE 567
Query: 236 LEEAETLIENADCRHDSSLWEVLL 259
++ E + R D+ W ++
Sbjct: 568 MDGCEKIFSRMAERRDNVTWNSMI 591
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 106/195 (54%), Gaps = 8/195 (4%)
Query: 9 HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF 68
H+++ L +V + ++L++ Y + G + +VFD+M +N VS + ++ GY + G+
Sbjct: 24 HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83
Query: 69 ESVIRIFREMEEIDLFS----FGIVLRACA--GLAALRLGKEVHCQYIRRSGCKDVIIES 122
+ + R+M + +FS F VLRAC G + G+++H + S D ++ +
Sbjct: 84 KEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSN 143
Query: 123 ALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
L+ +Y KC G V +A F + V+N ++WNS+IS ++Q G A RIF M G++
Sbjct: 144 VLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSR 203
Query: 182 PDHVSFIG-VLSACS 195
P +F V +ACS
Sbjct: 204 PTEYTFGSLVTTACS 218
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 15/257 (5%)
Query: 16 GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
GL ++ V S LV + K G + + +VF++M +N+V+ + L+ G + E ++F
Sbjct: 238 GLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLF 297
Query: 76 REME---EIDLFSFGIVLRA-----CAGLAALRLGKEVHCQYIRRSGCKDVI--IESALV 125
+M ++ S+ I+L + A L+ G+EVH I +G D + I + LV
Sbjct: 298 MDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVIT-TGLVDFMVGIGNGLV 356
Query: 126 DLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185
++YAKCG + A ++F M ++ ++WNSMI+G QNG EA+ + M P
Sbjct: 357 NMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSF 416
Query: 186 SFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244
+ I LS+C+ + G++ H S+ + I + N ++ L G L E +
Sbjct: 417 TLISSLSSCASLKWAKLGQQIHGESL--KLGIDLNVSVSNALMTLYAETGYLNECRKIFS 474
Query: 245 NADCRHDSSLWEVLLGA 261
+ HD W ++GA
Sbjct: 475 SMP-EHDQVSWNSIIGA 490
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 9/180 (5%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKC-GLVDESHRVFDKMLKKNSVSSSALLQGYC 63
G+++H + L + VV + L+ MY KC G V + F + KNSVS ++++ Y
Sbjct: 123 GRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYS 182
Query: 64 QTGDFESVIRIFREME----EIDLFSFG-IVLRACAGLAA-LRLGKEVHCQYIRRSGC-K 116
Q GD S RIF M+ ++FG +V AC+ +RL +++ C I++SG
Sbjct: 183 QAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCT-IQKSGLLT 241
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
D+ + S LV +AK G + +A ++F QM RN +T N ++ G + GEEA ++F DM
Sbjct: 242 DLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN 301
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L++G EVHA + L +VVV S+LVDMY KCG +D + R F+ M +NS S ++++ G
Sbjct: 635 LERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISG 694
Query: 62 YCQTGDFESVIRIFREME-----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
Y + G E +++F M+ D +F VL AC+ L G + H + + S
Sbjct: 695 YARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFK-HFESMSDSYGL 753
Query: 117 DVIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQ-NGRGEE 167
IE S + D+ + G +D +MP++ N++ W +++ + NGR E
Sbjct: 754 APRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAE 808
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%)
Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
KDV + + L++ Y + G A ++F +MP+RN ++W ++SG+++NG +EAL DM
Sbjct: 34 KDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDM 93
Query: 176 TEGGTKPDHVSFIGVLSACSHMGLI 200
+ G + +F+ VL AC +G +
Sbjct: 94 VKEGIFSNQYAFVSVLRACQEIGSV 118
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 270 bits (689), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 207/332 (62%), Gaps = 4/332 (1%)
Query: 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
+GKE+H VI G+ +V + SSLVDMY K +++S RVF ++ ++ +S ++L+ GY
Sbjct: 260 KGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYV 319
Query: 64 QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
Q G + +R+FR+M + +F V+ ACA LA L LGK++H +R ++
Sbjct: 320 QNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIF 379
Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
I SALVD+Y+KCG + A +IF +M V + ++W ++I G A +G G EA+ +F++M G
Sbjct: 380 IASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQG 439
Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
KP+ V+F+ VL+ACSH+GL+D +F SMTK Y + ++EHY + DLLGRAG LEEA
Sbjct: 440 VKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEA 499
Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
I S+W LL +C+ +N +AE+VA+KI + + +YVL+ N+Y +
Sbjct: 500 YNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASN 559
Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
GRW + K+R M+ G++K P SWIE +K
Sbjct: 560 GRWKEMAKLRLRMRKKGLRKKPACSWIEMKNK 591
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 148/299 (49%), Gaps = 41/299 (13%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC-GL------------------------ 36
L+ G+ VH ++ LG+ ++ ++L++MY K G+
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDED 180
Query: 37 -----------VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL-- 83
+D RVF+ M +K+ VS + ++ GY Q+G +E +R+ REM DL
Sbjct: 181 VKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKP 240
Query: 84 --FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141
F+ VL + + GKE+H IR+ DV I S+LVD+YAK ++ + ++F
Sbjct: 241 DSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300
Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
++ R+ I+WNS+++G+ QNGR EALR+F M KP V+F V+ AC+H+ +
Sbjct: 301 SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLH 360
Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
G++ + + I + +VD+ + G ++ A + + + + S +++G
Sbjct: 361 LGKQLHGYVLRG-GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMG 418
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 138/319 (43%), Gaps = 43/319 (13%)
Query: 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
Q K++HA+ I + S ++ +Y L+ E+ +F + ++ ++++ +
Sbjct: 23 QAKQLHAQFIRTQSLSHTSA-SIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81
Query: 64 QTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
F + F EM D F VL++C + LR G+ VH +R D+
Sbjct: 82 DQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141
Query: 120 IESALVDLYAKC-------------------------------GC-----VDFAHQIFLQ 143
+AL+++YAK C +D ++F
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEV 201
Query: 144 MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
MP ++++++N++I+G+AQ+G E+ALR+ +M KPD + VL S + +G
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261
Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
++ + ++ I + + +VD+ ++ +E++E + CR D W L+
Sbjct: 262 KEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR-DGISWNSLVAGYV 319
Query: 264 TFRNAHVAERVAKKIMELK 282
+ A R+ ++++ K
Sbjct: 320 QNGRYNEALRLFRQMVTAK 338
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L GK++H V+ G N+ + S+LVDMY KCG + + ++FD+M + VS +A++ G
Sbjct: 359 LHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMG 418
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
+ G + +F EM+ + + +F VL AC+ + + + G
Sbjct: 419 HALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQ 478
Query: 118 VIIE-SALVDLYAKCGCVDFAHQIFLQMPVRNL-ITWNSMIS 157
+ +A+ DL + G ++ A+ +M V W++++S
Sbjct: 479 ELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLS 520
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 268 bits (685), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 206/336 (61%), Gaps = 4/336 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+ QGK+VHA I G ++ V S ++DMY KCG + + FD + + V+ + ++ G
Sbjct: 533 INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISG 592
Query: 62 YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
+ G+ E +F +M + D F+ + +A + L AL G+++H ++ + D
Sbjct: 593 CIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTND 652
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ ++LVD+YAKCG +D A+ +F ++ + N+ WN+M+ G AQ+G G+E L++F M
Sbjct: 653 PFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKS 712
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G KPD V+FIGVLSACSH GL+ KH SM +Y IKP+IEHY+C+ D LGRAGL++
Sbjct: 713 LGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVK 772
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
+AE LIE+ +S++ LL AC + +RVA K++EL+P +YVLL N+Y
Sbjct: 773 QAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYA 832
Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
A +W++ RT+MK VKK PG SWIE +K++
Sbjct: 833 AASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 11/290 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L K+VH I + + V ++L+D Y + + E+ +F++ + V+ +A++ G
Sbjct: 433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERH-NFDLVAWNAMMAG 491
Query: 62 YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q+ D +++F M E D F+ V + C L A+ GK+VH I+ D
Sbjct: 492 YTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLD 551
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ + S ++D+Y KCG + A F +PV + + W +MISG +NG E A +F M
Sbjct: 552 LWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRL 611
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
G PD + + A S + +++GR+ H ++ P + +VD+ + G +
Sbjct: 612 MGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCGSI 669
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPD 284
++A L + + + ++ W +L ++ K++ L KPD
Sbjct: 670 DDAYCLFKRIEMMNITA-WNAMLVGLAQHGEGKETLQLFKQMKSLGIKPD 718
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 149/293 (50%), Gaps = 16/293 (5%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L G++VH + LGL + V +SL++MY K + VFD M +++ +S ++++ G
Sbjct: 331 LALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAG 390
Query: 62 YCQTG-DFESV---IRIFREMEEIDLFSFGIVLRACAGLA-ALRLGKEVHCQYIRRSGCK 116
Q G + E+V +++ R + D ++ VL+A + L L L K+VH I+ +
Sbjct: 391 IAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVS 450
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
D + +AL+D Y++ C+ A +I + +L+ WN+M++G+ Q+ G + L++F M
Sbjct: 451 DSFVSTALIDAYSRNRCMKEA-EILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMH 509
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
+ G + D + V C + I++G++ H ++ Y + + + ++D+ + G
Sbjct: 510 KQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGD 567
Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTF----RNAHVAERVAKKIMELKPD 284
+ A+ ++ D + W ++ C R HV ++ ++M + PD
Sbjct: 568 MSAAQFAFDSIPVPDDVA-WTTMISGCIENGEEERAFHVFSQM--RLMGVLPD 617
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 18/221 (8%)
Query: 59 LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
L Y +G + ++++ F +M E D+ +F ++L + +L LG++VHC ++
Sbjct: 287 LSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGL 346
Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
+ + ++L+++Y K FA +F M R+LI+WNS+I+G AQNG EA+ +F
Sbjct: 347 DLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQ 406
Query: 175 MTEGGTKPDHVSFIGVLSACSHM--GLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLL 230
+ G KPD + VL A S + GL + H ++ +I + + ++D
Sbjct: 407 LLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAI----KINNVSDSFVSTALIDAY 462
Query: 231 GRAGLLEEAETLIENADCRHDSSL--WEVLLGACTTFRNAH 269
R ++EAE L E RH+ L W ++ T + H
Sbjct: 463 SRNRCMKEAEILFE----RHNFDLVAWNAMMAGYTQSHDGH 499
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 11/196 (5%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L GK HA+++T + ++L+ MY KCG + + RVFDKM ++ VS +++L
Sbjct: 55 LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114
Query: 62 YCQTGD-----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
Y Q+ + + +FR + + +++ + L L L G + CK
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLC-LHSGYVWASESFHGYACK 173
Query: 117 -----DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
D + ALV++Y K G V +F +MP R+++ WN M+ + + G EEA+ +
Sbjct: 174 IGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 233
Query: 172 FDDMTEGGTKPDHVSF 187
G P+ ++
Sbjct: 234 SSAFHSSGLNPNEITL 249
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 86/181 (47%), Gaps = 8/181 (4%)
Query: 86 FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
FG LR + L LGK H + + + + + L+ +Y+KCG + +A ++F +MP
Sbjct: 43 FGF-LRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMP 101
Query: 146 VRNLITWNSMISGFAQNGRG-----EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
R+L++WNS+++ +AQ+ ++A +F + + ++ +L C H G +
Sbjct: 102 DRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161
Query: 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
+ F + + +V++ + G ++E + L E R D LW ++L
Sbjct: 162 -WASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLK 219
Query: 261 A 261
A
Sbjct: 220 A 220
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 210/336 (62%), Gaps = 4/336 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
LK+G+++HA+ G ++ +++LV +Y +CG ++ES+ F++ ++++ +AL+ G
Sbjct: 607 LKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSG 666
Query: 62 YCQTGDFESVIRIFREM--EEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
+ Q+G+ E +R+F M E ID F+FG ++A + A ++ GK+VH + +
Sbjct: 667 FQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 726
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ +AL+ +YAKCG + A + FL++ +N ++WN++I+ ++++G G EAL FD M
Sbjct: 727 TEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH 786
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
+P+HV+ +GVLSACSH+GL+D+G +F SM EY + PK EHY C+VD+L RAGLL
Sbjct: 787 SNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLS 846
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
A+ I+ + D+ +W LL AC +N + E A ++EL+P+ +YVLL N+Y
Sbjct: 847 RAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 906
Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
+W+ R MK GVKK PG+SWIE + ++
Sbjct: 907 VSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 942
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 139/267 (52%), Gaps = 12/267 (4%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ G+++H+++I N V S L+DMY K G +D + + + K+ VS + ++ G
Sbjct: 506 LELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 565
Query: 62 YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
Y Q + + FR+M +E+ L + + ACAGL AL+ G+++H Q
Sbjct: 566 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTN---AVSACAGLQALKEGQQIHAQACVSGF 622
Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
D+ ++ALV LY++CG ++ ++ F Q + I WN+++SGF Q+G EEALR+F
Sbjct: 623 SSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVR 682
Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
M G ++ +F + A S + +G++ A +TK + E N ++ + + G
Sbjct: 683 MNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNALISMYAKCG 741
Query: 235 LLEEAETLIENADCRHDSSLWEVLLGA 261
+ +AE +++ S W ++ A
Sbjct: 742 SISDAEKQFLEVSTKNEVS-WNAIINA 767
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 138/277 (49%), Gaps = 6/277 (2%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L +G+++HA LG N +E +L+++Y KC ++ + F + +N V + +L
Sbjct: 405 LFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVA 464
Query: 62 YCQTGDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y D + RIFR+M EEI + +++ +L+ C L L LG+++H Q I+ + +
Sbjct: 465 YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLN 524
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ S L+D+YAK G +D A I ++ +++++W +MI+G+ Q ++AL F M +
Sbjct: 525 AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD 584
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G + D V +SAC+ + + G++ A + N +V L R G +E
Sbjct: 585 RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALVTLYSRCGKIE 643
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274
E+ E + D+ W L+ N A RV
Sbjct: 644 ESYLAFEQTEA-GDNIAWNALVSGFQQSGNNEEALRV 679
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 156/304 (51%), Gaps = 20/304 (6%)
Query: 6 KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
+++HA+++ GL + VV + L+D+Y + G VD + RVFD + K+ S A++ G +
Sbjct: 207 EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKN 266
Query: 66 GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
IR+F +M + + ++F VL AC + +L +G+++H ++ D +
Sbjct: 267 ECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVC 326
Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
+ALV LY G + A IF M R+ +T+N++I+G +Q G GE+A+ +F M G +
Sbjct: 327 NALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLE 386
Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGLLEEA- 239
PD + ++ ACS G + RG++ A TK + KIE +++L + +E A
Sbjct: 387 PDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--GALLNLYAKCADIETAL 444
Query: 240 ----ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK--KIMELKPDCHLSYVLLD 293
ET +EN LW V+L A + + R+ + +I E+ P+ + +L
Sbjct: 445 DYFLETEVENV------VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 498
Query: 294 NVYR 297
R
Sbjct: 499 TCIR 502
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 129/271 (47%), Gaps = 12/271 (4%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ G+++H V+ LG + V ++LV +Y G + + +F M ++++V+ + L+ G
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 363
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Q G E + +F+ M E D + ++ AC+ L G+++H + +
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 423
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
IE AL++LYAKC ++ A FL+ V N++ WN M+ + + RIF M
Sbjct: 424 NKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI 483
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC--MVDLLGRAGL 235
P+ ++ +L C +G ++ G + + + K ++ Y C ++D+ + G
Sbjct: 484 EEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK---TNFQLNAYVCSVLIDMYAKLGK 540
Query: 236 LEEA-ETLIENADCRHDSSLWEVLLGACTTF 265
L+ A + LI A D W ++ T +
Sbjct: 541 LDTAWDILIRFAG--KDVVSWTTMIAGYTQY 569
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 139/292 (47%), Gaps = 9/292 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L +G+++H++++ LGL N + L D Y G + + +VFD+M ++ + + +++
Sbjct: 101 LDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKE 160
Query: 62 YCQTGDFESVIRIFREMEEIDLF----SFGIVLRAC-AGLAALRLGKEVHCQYIRRSGCK 116
V +F M ++ +F VL AC G A + +++H + + +
Sbjct: 161 LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD 220
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
++ + L+DLY++ G VD A ++F + +++ +W +MISG ++N EA+R+F DM
Sbjct: 221 STVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMY 280
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
G P +F VLSAC + ++ G + + + N +V L G L
Sbjct: 281 VLGIMPTPYAFSSVLSACKKIESLEIGEQ-LHGLVLKLGFSSDTYVCNALVSLYFHLGNL 339
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDCH 286
AE + N R D+ + L+ + A + K++ L+PD +
Sbjct: 340 ISAEHIFSNMSQR-DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSN 390
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 264 bits (675), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 202/337 (59%), Gaps = 5/337 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ G+++H + + + V +SLVDMY KC + +E+ +F + ++ +VS +AL+ G
Sbjct: 367 LQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISG 426
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q G + +++F +M D +F VL+A A A+L LGK++H IR ++
Sbjct: 427 YVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLEN 486
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
V S LVD+YAKCG + A Q+F +MP RN ++WN++IS A NG GE A+ F M E
Sbjct: 487 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIE 546
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G +PD VS +GVL+ACSH G +++G ++F +M+ Y I PK +HY CM+DLLGR G
Sbjct: 547 SGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFA 606
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL-KPDCHLSYVLLDNVY 296
EAE L++ D +W +L AC +N +AER A+K+ + K +YV + N+Y
Sbjct: 607 EAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIY 666
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
A G W ++ M+ G+KK+P SW+E N K++
Sbjct: 667 AAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIH 703
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 147/286 (51%), Gaps = 8/286 (2%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G+++HA +T G + V + ++D Y K V E+ +FD+M + + VS + ++ Y Q
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328
Query: 65 TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
+E+ + FREM+ + F F +L A L++L++G+++HCQ + + + +
Sbjct: 329 ADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHV 388
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
++LVD+YAKC + A IF +P R ++W ++ISG+ Q G L++F M
Sbjct: 389 GNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNL 448
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
+ D +F VL A + + G++ A + + ++ + + +VD+ + G +++A
Sbjct: 449 RADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE-NVFSGSGLVDMYAKCGSIKDAV 507
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
+ E R+ S W L+ A + A K++E L+PD
Sbjct: 508 QVFEEMPDRNAVS-WNALISAHADNGDGEAAIGAFAKMIESGLQPD 552
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 130/262 (49%), Gaps = 12/262 (4%)
Query: 7 EVHAKVITLGLCGN--VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
+VHA + LG N + V + L+ Y + +D + +F+++ +K+SV+ + L+ GY +
Sbjct: 168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEK 227
Query: 65 TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
G + I +F +M + F+F VL+A GL LG+++H + +D +
Sbjct: 228 DGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASV 287
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
+ ++D Y+K V +F +MP + +++N +IS ++Q + E +L F +M G
Sbjct: 288 GNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGF 347
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHY-NCMVDLLGRAGLLEE 238
+ F +LS +++ + GR+ H ++ I H N +VD+ + + EE
Sbjct: 348 DRRNFPFATMLSIAANLSSLQMGRQLHCQALLA---TADSILHVGNSLVDMYAKCEMFEE 404
Query: 239 AETLIENADCRHDSSLWEVLLG 260
AE + ++ R S W L+
Sbjct: 405 AELIFKSLPQRTTVS-WTALIS 425
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 111/235 (47%), Gaps = 41/235 (17%)
Query: 6 KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
+ V A++I G + + +V+ + G V + +V+D+M KN+VS++ ++ G+ +T
Sbjct: 33 RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92
Query: 66 GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS------------ 113
GD S +F M + + ++ I++ A + ++ Q R S
Sbjct: 93 GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152
Query: 114 ---GCKDVIIESALVDLYA--------------------KCGC----VDFAHQIFLQMPV 146
GC D + ++A+ ++A K C +D A +F ++P
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212
Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
++ +T+N++I+G+ ++G E++ +F M + G +P +F GVL A +GL D
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGLHD 265
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 261 bits (668), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 203/336 (60%), Gaps = 4/336 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+ +GK++HA +I ++ V S+L+DMY KC + + VFD+M +KN VS +A++ G
Sbjct: 286 INEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVG 345
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y QTG E ++IF +M+ + D ++ G + ACA +++L G + H + I
Sbjct: 346 YGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHY 405
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
V + ++LV LY KCG +D + ++F +M VR+ ++W +M+S +AQ GR E +++FD M +
Sbjct: 406 VTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQ 465
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G KPD V+ GV+SACS GL+++G+++F MT EY I P I HY+CM+DL R+G LE
Sbjct: 466 HGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLE 525
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
EA I D+ W LL AC N + + A+ ++EL P Y LL ++Y
Sbjct: 526 EAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYA 585
Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
+ G+W+ ++R M+ VKK PG+SWI+ KL+
Sbjct: 586 SKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLH 621
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 164/320 (51%), Gaps = 46/320 (14%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM----------------- 47
GK++H +VI LG ++V S L+ MY G + ++ +VF +
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217
Query: 48 -------------LKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVL 90
++K+SVS +A+++G Q G + I FREM+ ++D + FG VL
Sbjct: 218 CGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277
Query: 91 RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
AC GL A+ GK++H IR + + + SAL+D+Y KC C+ +A +F +M +N++
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337
Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
+W +M+ G+ Q GR EEA++IF DM G PDH + +SAC+++ ++ G +
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKA 397
Query: 211 TKEYRIKPKIEHY----NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
I + HY N +V L G+ G ++++ L + R D+ W ++ A F
Sbjct: 398 -----ITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMVSAYAQFG 451
Query: 267 NAHVAERVAKKIME--LKPD 284
A ++ K+++ LKPD
Sbjct: 452 RAVETIQLFDKMVQHGLKPD 471
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 134/298 (44%), Gaps = 40/298 (13%)
Query: 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
N+ ++L+ Y K GL+ E F+K+ ++ V+ + L++GY +G + ++ + M
Sbjct: 71 NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130
Query: 79 ----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
+ + +L+ + + LGK++H Q I+ +++ S L+ +YA GC+
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190
Query: 135 DFAHQIFLQMPVRNL------------------------------ITWNSMISGFAQNGR 164
A ++F + RN ++W +MI G AQNG
Sbjct: 191 SDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGL 250
Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
+EA+ F +M G K D F VL AC +G I+ G++ A + + + I +
Sbjct: 251 AKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT-NFQDHIYVGS 309
Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
++D+ + L A+T+ + ++ S +++G T R AE K ++++
Sbjct: 310 ALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGR----AEEAVKIFLDMQ 363
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 213/344 (61%), Gaps = 16/344 (4%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+GK+VH +++ G G+V V + L+ +YG CG +D + +VFD+M +++ VS ++++
Sbjct: 167 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 226
Query: 62 YCQTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-- 116
+ G+++S +++FREM+ E D ++ VL ACAGL +L LG H +R+
Sbjct: 227 LVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 286
Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
DV+++++L+++Y KCG + A Q+F M R+L +WN+MI GFA +GR EEA+ FD M
Sbjct: 287 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 346
Query: 176 TEG--GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
+ +P+ V+F+G+L AC+H G +++GR++F M ++Y I+P +EHY C+VDL+ RA
Sbjct: 347 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 406
Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGA-CTTFRNAHVAERVAKKIMELKPD-------C 285
G + EA ++ + + D+ +W LL A C + ++E +A+ I+ K D C
Sbjct: 407 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 466
Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
+YVLL VY + RWND +R LM G++K PG S IE N
Sbjct: 467 SGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEIN 510
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 29/304 (9%)
Query: 2 LKQGKEVHAKVI---------TLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKN 51
+ Q K++HA + TL L G ++ + SS D V+ + RVFD + +
Sbjct: 61 MSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSD-------VNYAFRVFDSIENHS 113
Query: 52 SVSSSALLQGYCQ-TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEV 105
S + L++ E ++R+M E D +F VL+ACA + GK+V
Sbjct: 114 SFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQV 173
Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
HCQ ++ DV + + L+ LY CGC+D A ++F +MP R+L++WNSMI + G
Sbjct: 174 HCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEY 233
Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-- 223
+ AL++F +M + +PD + VLSAC+ +G + G A + ++ + ++
Sbjct: 234 DSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVK 292
Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA---ERVAKKIME 280
N ++++ + G L AE + + R +S ++LG T R +R+ K
Sbjct: 293 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 352
Query: 281 LKPD 284
++P+
Sbjct: 353 VRPN 356
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 209/338 (61%), Gaps = 8/338 (2%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L +GKE+HA + G +V + ++LVDMY + G VD + VF M +N VS SA++
Sbjct: 198 LMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIAC 257
Query: 62 YCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
Y + G +R FREM + + VL+ACA LAAL GK +H YI R G
Sbjct: 258 YAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIH-GYILRRGL 316
Query: 116 KDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
++ + SALV +Y +CG ++ ++F +M R++++WNS+IS + +G G++A++IF++
Sbjct: 317 DSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEE 376
Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
M G P V+F+ VL ACSH GL++ G++ F +M +++ IKP+IEHY CMVDLLGRA
Sbjct: 377 MLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRAN 436
Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
L+EA ++++ +W LLG+C N +AER ++++ L+P +YVLL +
Sbjct: 437 RLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLAD 496
Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
+Y W++ +++ L+++ G++K+PG+ W+E K+
Sbjct: 497 IYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKM 534
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 140/272 (51%), Gaps = 16/272 (5%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L VH ++ G + + + L+ MY G VD + +VFDK K+ +AL +
Sbjct: 93 LSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRA 152
Query: 62 YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAG----LAALRLGKEVHCQYIRRS 113
G E V+ ++ +M I D F++ VL+AC + L GKE+H RR
Sbjct: 153 LTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRG 212
Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
V I + LVD+YA+ GCVD+A +F MPVRN+++W++MI+ +A+NG+ EALR F
Sbjct: 213 YSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFR 272
Query: 174 DMTE--GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY--RIKPKIEHYNCMVDL 229
+M + P+ V+ + VL AC+ + +++G+ + + I P I + +V +
Sbjct: 273 EMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI---SALVTM 329
Query: 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
GR G LE + + + R D W L+ +
Sbjct: 330 YGRCGKLEVGQRVFDRMHDR-DVVSWNSLISS 360
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 110/250 (44%), Gaps = 6/250 (2%)
Query: 53 VSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
+S++ L+Q C+ G + IR+ + ++ +++ C ++L VH +
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDN 106
Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
+D + + L+ +Y+ G VD+A ++F + R + WN++ G GEE L ++
Sbjct: 107 GSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLY 166
Query: 173 DDMTEGGTKPDHVSFIGVLSAC----SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228
M G + D ++ VL AC + + +G++ A +T+ + +VD
Sbjct: 167 WKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRR-GYSSHVYIMTTLVD 225
Query: 229 LLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288
+ R G ++ A + R+ S W ++ A A R +++M D +
Sbjct: 226 MYARFGCVDYASYVFGGMPVRNVVS-WSAMIACYAKNGKAFEALRTFREMMRETKDSSPN 284
Query: 289 YVLLDNVYRA 298
V + +V +A
Sbjct: 285 SVTMVSVLQA 294
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 199/330 (60%), Gaps = 4/330 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
LK GK +H+ I G+C ++ V ++L+DMY KCG V +S ++F M ++V+ + ++
Sbjct: 424 LKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISA 483
Query: 62 YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
+ GDF + +++ +M + D+ +F + L CA LAA RLGKE+HC +R +
Sbjct: 484 CVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESE 543
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ I +AL+++Y+KCGC++ + ++F +M R+++TW MI + G GE+AL F DM +
Sbjct: 544 LQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEK 603
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G PD V FI ++ ACSH GL+D G F M Y+I P IEHY C+VDLL R+ +
Sbjct: 604 SGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKIS 663
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
+AE I+ + D+S+W +L AC T + AERV+++I+EL PD +L N Y
Sbjct: 664 KAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYA 723
Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
A+ +W+ IR +K + K PG SWIE
Sbjct: 724 ALRKWDKVSLIRKSLKDKHITKNPGYSWIE 753
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 136/264 (51%), Gaps = 6/264 (2%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L K ++ ++ G V + L+D+Y KCG + + VF+ M K++VS ++++ G
Sbjct: 323 LSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISG 382
Query: 62 YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q+GD +++F+ M E+ D ++ +++ LA L+ GK +H I+ C D
Sbjct: 383 YIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICID 442
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ + +AL+D+YAKCG V + +IF M + +TWN++IS + G L++ M +
Sbjct: 443 LSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRK 502
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
PD +F+ L C+ + G++ + + + + +++ N ++++ + G LE
Sbjct: 503 SEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR-FGYESELQIGNALIEMYSKCGCLE 561
Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
+ + E R D W ++ A
Sbjct: 562 NSSRVFERMS-RRDVVTWTGMIYA 584
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 115/208 (55%), Gaps = 5/208 (2%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNSVSSSALLQ 60
L + + +HA VI+LGL + L+D Y S VF ++ KN +++++
Sbjct: 20 LNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIR 79
Query: 61 GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
+ + G F + + ++ E D ++F V++ACAGL +G V+ Q +
Sbjct: 80 AFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFES 139
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
D+ + +ALVD+Y++ G + A Q+F +MPVR+L++WNS+ISG++ +G EEAL I+ ++
Sbjct: 140 DLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELK 199
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGR 204
PD + VL A ++ ++ +G+
Sbjct: 200 NSWIVPDSFTVSSVLPAFGNLLVVKQGQ 227
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 149/288 (51%), Gaps = 7/288 (2%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+KQG+ +H + G+ VVV + LV MY K ++ RVFD+M ++SVS + ++ G
Sbjct: 223 VKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICG 282
Query: 62 YCQTGDFESVIRIFRE---MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
Y + E +R+F E + DL + VLRAC L L L K ++ ++ +
Sbjct: 283 YLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLES 342
Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
+ + L+D+YAKCG + A +F M ++ ++WNS+ISG+ Q+G EA+++F M
Sbjct: 343 TVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIM 402
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
+ DH++++ ++S + + + G+ ++ K I + N ++D+ + G + +
Sbjct: 403 EEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS-GICIDLSVSNALIDMYAKCGEVGD 461
Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPD 284
+ + + D+ W ++ AC F + +V ++ E+ PD
Sbjct: 462 SLKIFSSMGT-GDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPD 508
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 254 bits (650), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 206/335 (61%), Gaps = 5/335 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+++GK++H +V LGL +V V++SL++MYG+CG ++ S VF+K+ K + S S+++
Sbjct: 148 IREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSA 207
Query: 62 YCQTGDFESVIRIFREM-EEIDLFS--FGIV--LRACAGLAALRLGKEVHCQYIRRSGCK 116
G + + +FR M E +L + G+V L ACA AL LG +H +R
Sbjct: 208 RAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISEL 267
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
++I++++LVD+Y KCGC+D A IF +M RN +T+++MISG A +G GE ALR+F M
Sbjct: 268 NIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMI 327
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
+ G +PDHV ++ VL+ACSH GL+ GR+ FA M KE +++P EHY C+VDLLGRAGLL
Sbjct: 328 KEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLL 387
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
EEA I++ + +W L C +N + + A+++++L Y+L+ N+Y
Sbjct: 388 EEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLY 447
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
W+D + RT + G+K+ PG S +E K
Sbjct: 448 SQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGK 482
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 121/246 (49%), Gaps = 8/246 (3%)
Query: 56 SALLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111
+ +++GY FE + + EM E D F++ +L+AC L ++R GK++H Q +
Sbjct: 101 NTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFK 160
Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
DV ++++L+++Y +CG ++ + +F ++ + +W+SM+S A G E L +
Sbjct: 161 LGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLL 220
Query: 172 FDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230
F M +E K + + L AC++ G ++ G + + + I +VD+
Sbjct: 221 FRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNIS-ELNIIVQTSLVDMY 279
Query: 231 GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSY 289
+ G L++A + + + R++ + ++ G +K I E L+PD H+ Y
Sbjct: 280 VKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPD-HVVY 338
Query: 290 VLLDNV 295
V + N
Sbjct: 339 VSVLNA 344
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 254 bits (648), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 201/335 (60%), Gaps = 4/335 (1%)
Query: 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
+ GK+V + GL N V +S++ M+ K ++++ R F+ + +KN VS + L G
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449
Query: 63 CQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
C+ +FE ++ E+ E +L F+F +L A + ++R G+++H Q ++ +
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 509
Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
+ +AL+ +Y+KCG +D A ++F M RN+I+W SMI+GFA++G L F+ M E
Sbjct: 510 PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE 569
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
G KP+ V+++ +LSACSH+GL+ G +HF SM ++++IKPK+EHY CMVDLL RAGLL +
Sbjct: 570 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 629
Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
A I + D +W LGAC N + + A+KI+EL P+ +Y+ L N+Y
Sbjct: 630 AFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYAC 689
Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
G+W ++ ++R MK + K G SWIE K++
Sbjct: 690 AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIH 724
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 154/309 (49%), Gaps = 14/309 (4%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSAL 58
L GK++H+ I GL +V E SLVDMY KC G VD+ +VFD+M + +S +AL
Sbjct: 285 LSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTAL 342
Query: 59 LQGYCQTGDFES-VIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
+ GY + + + I +F EM E + F+F +AC L+ R+GK+V Q +R
Sbjct: 343 ITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR 402
Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
+ + ++++ ++ K ++ A + F + +NL+++N+ + G +N E+A ++
Sbjct: 403 GLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLL 462
Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
++TE +F +LS +++G I +G + + + K + N ++ + +
Sbjct: 463 SEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVK-LGLSCNQPVCNALISMYSK 521
Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSYVL 291
G ++ A + + R+ S ++ G V E + I E +KP+ ++YV
Sbjct: 522 CGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPN-EVTYVA 580
Query: 292 LDNVYRAVG 300
+ + VG
Sbjct: 581 ILSACSHVG 589
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 113/214 (52%), Gaps = 11/214 (5%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML---KKNSVSSSAL 58
+ GK VHA++I + + V+ +SL+ +Y K G ++ VF+ M K++ VS SA+
Sbjct: 78 FRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAM 137
Query: 59 LQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
+ Y G I++F E E+ L + + V+RAC+ + +G+ V ++ ++G
Sbjct: 138 MACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGR-VTLGFLMKTG 196
Query: 115 C--KDVIIESALVDLYAKC-GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI 171
DV + +L+D++ K + A+++F +M N++TW MI+ Q G EA+R
Sbjct: 197 HFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRF 256
Query: 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
F DM G + D + V SAC+ + + G++
Sbjct: 257 FLDMVLSGFESDKFTLSSVFSACAELENLSLGKQ 290
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 78 MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
+ +D +F +L++C RLGK VH + I D ++ ++L+ LY+K G A
Sbjct: 57 IRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKA 116
Query: 138 HQIFLQM---PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
+F M R++++W++M++ + NGR +A+++F + E G P+ + V+ AC
Sbjct: 117 EDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRAC 176
Query: 195 SHMGLIDRGR 204
S+ + GR
Sbjct: 177 SNSDFVGVGR 186
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 253 bits (645), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 197/336 (58%), Gaps = 5/336 (1%)
Query: 2 LKQGKEVHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
++ G+ VH + G +V + SSLVDMYGKC D++ +VFD+M +N V+ +AL+
Sbjct: 220 VRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIA 279
Query: 61 GYCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
GY Q+ F+ + +F EM + D+ + VL ACA + AL G+ VHC I+ S
Sbjct: 280 GYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEI 339
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
+ + L+DLY KCGC++ A +F ++ +N+ TW +MI+GFA +G +A +F M
Sbjct: 340 NTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTML 399
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
P+ V+F+ VLSAC+H GL++ GR+ F SM + ++PK +HY CMVDL GR GLL
Sbjct: 400 SSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLL 459
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
EEA+ LIE + +W L G+C ++ + + A ++++L+P Y LL N+Y
Sbjct: 460 EEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLY 519
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
W++ ++R MK V K PG SWIE KL
Sbjct: 520 SESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKL 555
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 133/243 (54%), Gaps = 6/243 (2%)
Query: 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
+ HA ++ GL + V +SL+ Y GL D + R+FD K+ V+ +A++ G+ + G
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183
Query: 67 DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIE 121
+ F EM++ + + VL+A + +R G+ VH Y+ K DV I
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243
Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
S+LVD+Y KC C D A ++F +MP RN++TW ++I+G+ Q+ ++ + +F++M +
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA 303
Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
P+ + VLSAC+H+G + RGR+ M K I+ ++DL + G LEEA
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYMIKN-SIEINTTAGTTLIDLYVKCGCLEEAIL 362
Query: 242 LIE 244
+ E
Sbjct: 363 VFE 365
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 1/158 (0%)
Query: 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG 163
+ H ++ D + ++L+ Y+ G DFA ++F ++++TW +MI GF +NG
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183
Query: 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223
EA+ F +M + G + ++ + VL A + + GR + R+K +
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243
Query: 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
+ +VD+ G+ ++A+ + + R+ + W L+
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVT-WTALIAG 280
>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2
SV=1
Length = 752
Score = 251 bits (642), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 197/337 (58%), Gaps = 5/337 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L GK++HA V LGL V V + LVD Y KC + + R F ++ + N VS SA++ G
Sbjct: 301 LNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISG 360
Query: 62 YCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
YCQ FE ++ F+ + ++ F++ + +AC+ LA +G +VH I+RS
Sbjct: 361 YCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIG 420
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
ESAL+ +Y+KCGC+D A+++F M +++ W + ISG A G EALR+F+ M
Sbjct: 421 SQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMV 480
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
G KP+ V+FI VL+ACSH GL+++G+ +M ++Y + P I+HY+CM+D+ R+GLL
Sbjct: 481 SCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLL 540
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
+EA ++N D+ W+ L C T +N + E +++ +L P+ YVL N+Y
Sbjct: 541 DEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLY 600
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
G+W +A ++ LM +KK SWI+ K++
Sbjct: 601 TWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIH 637
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 152/290 (52%), Gaps = 9/290 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L G+++HA VI GLC N +E+ +V+MY KCG + + RVFD+M K V+ + L+ G
Sbjct: 200 LDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVG 259
Query: 62 YCQTGDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q G +++F E E D F F +VL+ACA L L LGK++H + +
Sbjct: 260 YTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESE 319
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
V + + LVD Y KC + A + F ++ N ++W+++ISG+ Q + EEA++ F + +
Sbjct: 320 VSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRS 379
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
+ + + ++ + ACS + + G + A K I + + ++ + + G L
Sbjct: 380 KNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGE-SALITMYSKCGCL 438
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
++A + E+ D D W + + NA A R+ +K++ +KP+
Sbjct: 439 DDANEVFESMD-NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPN 487
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 128/247 (51%), Gaps = 5/247 (2%)
Query: 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM- 78
+V++++ ++ MY +C ++++ ++FD+M + N+VS + ++ Y + G + + +F M
Sbjct: 117 SVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGML 176
Query: 79 ---EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
++ + +L++ AL G+++H IR C + IE+ +V++Y KCG +
Sbjct: 177 ASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLV 236
Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
A ++F QM V+ + ++ G+ Q GR +AL++F D+ G + D F VL AC+
Sbjct: 237 GAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACA 296
Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
+ ++ G++ A + K ++ ++ +VD + E A + +D S
Sbjct: 297 SLEELNLGKQIHACVAK-LGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWS 355
Query: 256 EVLLGAC 262
++ G C
Sbjct: 356 AIISGYC 362
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 251 bits (641), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 200/334 (59%), Gaps = 5/334 (1%)
Query: 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
K G+ VH + GL NVVVE+SLVDMY K G ++ + RVF +M+ K +VS +L+ G+
Sbjct: 234 KMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGF 293
Query: 63 CQTG----DFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
Q G FE+V+ + + DL + VL AC+ + +L+ G+ VHC YI + D
Sbjct: 294 AQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHC-YILKRHVLDR 352
Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
+ +AL+D+Y+KCG + + +IF + ++L+ WN+MIS + +G G+E + +F MTE
Sbjct: 353 VTATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTES 412
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
+PDH +F +LSA SH GL+++G+ F+ M +Y+I+P +HY C++DLL RAG +EE
Sbjct: 413 NIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEE 472
Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
A +I + + +W LL C RN V + A KI++L PD L+ N +
Sbjct: 473 ALDMINSEKLDNALPIWVALLSGCINHRNLSVGDIAANKILQLNPDSIGIQTLVSNFFAT 532
Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
+W + K+R LM+ ++K+PG S IE N +L
Sbjct: 533 ANKWKEVAKVRKLMRNGAMEKVPGYSAIEVNGEL 566
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 152/290 (52%), Gaps = 11/290 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L++G+ V K + G +V V SS++++Y KCG +DE+ +F KM K++ + + ++ G
Sbjct: 132 LEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTG 191
Query: 62 YCQTGDFESVIRIFREMEEIDLFSFGIV----LRACAGLAALRLGKEVHCQYIRRSGCK- 116
+ Q G + +REM+ +V L+A L ++G+ VH Y+ R+G
Sbjct: 192 FAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVH-GYLYRTGLPM 250
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
+V++E++LVD+YAK G ++ A ++F +M + ++W S+ISGFAQNG +A +M
Sbjct: 251 NVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQ 310
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
G +PD V+ +GVL ACS +G + GR + K + + ++D+ + G L
Sbjct: 311 SLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVLDRVTA--TALMDMYSKCGAL 368
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPD 284
+ + E+ R D W ++ N + K+ E ++PD
Sbjct: 369 SSSREIFEHVG-RKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPD 417
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 125/240 (52%), Gaps = 10/240 (4%)
Query: 7 EVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
++HA VI+ G L + L+ G+ G + + +VFD++ ++ ++++ Y +
Sbjct: 35 QIHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKVFDELPQRGVSVYNSMIVVYSRG 94
Query: 66 GDFESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
+ + V+R++ +M E+I D +F + ++AC L G+ V C+ + DV +
Sbjct: 95 KNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVC 154
Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
S++++LY KCG +D A +F +M R++I W +M++GFAQ G+ +A+ + +M G
Sbjct: 155 SSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFG 214
Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR--IKPKIEHYNCMVDLLGRAGLLEEA 239
D V +G+L A +G GR + YR + + +VD+ + G +E A
Sbjct: 215 RDRVVMLGLLQASGDLGDTKMGRSVHGYL---YRTGLPMNVVVETSLVDMYAKVGFIEVA 271
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 208/337 (61%), Gaps = 5/337 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-NSVSSSALLQ 60
L QG ++H+ +I G ++ V +SL+ MY C + +F+ +SVS + +L
Sbjct: 387 LSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILT 446
Query: 61 GYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
Q ++R+F+ M E D + G +LR C +++L+LG +VHC ++
Sbjct: 447 ACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAP 506
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
+ I++ L+D+YAKCG + A +IF M R++++W+++I G+AQ+G GEEAL +F +M
Sbjct: 507 EQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMK 566
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
G +P+HV+F+GVL+ACSH+GL++ G K +A+M E+ I P EH +C+VDLL RAG L
Sbjct: 567 SAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRL 626
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
EAE I+ D +W+ LL AC T N H+A++ A+ I+++ P ++VLL +++
Sbjct: 627 NEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMH 686
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
+ G W +A +R+ MK VKK+PG+SWIE K++
Sbjct: 687 ASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIH 723
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 148/279 (53%), Gaps = 9/279 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L QG+++H ++ + ++ + ++ MYGKCG + ++ VFD M ++N VS ++++ G
Sbjct: 83 LAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITG 142
Query: 62 YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q G IR++ +M + DL F+FG +++ACA + + LGK++H Q I+
Sbjct: 143 YSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSH 202
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+I ++AL+ +Y + + A ++F +P+++LI+W+S+I+GF+Q G EAL +M
Sbjct: 203 LIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLS 262
Query: 178 GGT-KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
G P+ F L ACS + D G + K I + + D+ R G L
Sbjct: 263 FGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCS-LCDMYARCGFL 321
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA 275
A + + + R D++ W V++ N + E V+
Sbjct: 322 NSARRVFDQIE-RPDTASWNVIIAGLAN--NGYADEAVS 357
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 148/299 (49%), Gaps = 10/299 (3%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
GK++HA+VI L +++ +++L+ MY + + ++ RVF + K+ +S S+++ G+ Q
Sbjct: 187 GKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQ 246
Query: 65 TG-DFESVIRIFREMEEIDLFS-----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
G +FE++ + +EM +F FG L+AC+ L G ++H I+ +
Sbjct: 247 LGFEFEALSHL-KEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNA 305
Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
I +L D+YA+CG ++ A ++F Q+ + +WN +I+G A NG +EA+ +F M
Sbjct: 306 IAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSS 365
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
G PD +S +L A + + +G + + + K + + N ++ + L
Sbjct: 366 GFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIK-WGFLADLTVCNSLLTMYTFCSDLYC 424
Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
L E+ DS W +L AC R+ K + L +C ++ + N+ R
Sbjct: 425 CFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFK--LMLVSECEPDHITMGNLLR 481
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 80/136 (58%), Gaps = 9/136 (6%)
Query: 85 SFGIVLR-------ACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDF 136
SF I LR AC+ +L G+++H +I S CK D I+ + ++ +Y KCG +
Sbjct: 62 SFKIRLRTYISLICACSSSRSLAQGRKIH-DHILNSNCKYDTILNNHILSMYGKCGSLRD 120
Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
A ++F MP RNL+++ S+I+G++QNG+G EA+R++ M + PD +F ++ AC+
Sbjct: 121 AREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACAS 180
Query: 197 MGLIDRGRKHFASMTK 212
+ G++ A + K
Sbjct: 181 SSDVGLGKQLHAQVIK 196
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/357 (35%), Positives = 201/357 (56%), Gaps = 25/357 (7%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSS----- 56
L G E+H+ ++ G+ N V SL+DMY KCG+++E+ ++ + ++ +VS +
Sbjct: 498 LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELE 557
Query: 57 ---------------ALLQGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLA 97
+++ GY E +F M E+ D F++ VL CA LA
Sbjct: 558 KMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLA 617
Query: 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157
+ LGK++H Q I++ DV I S LVD+Y+KCG + + +F + R+ +TWN+MI
Sbjct: 618 SAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMIC 677
Query: 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217
G+A +G+GEEA+++F+ M KP+HV+FI +L AC+HMGLID+G ++F M ++Y +
Sbjct: 678 GYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLD 737
Query: 218 PKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR-NAHVAERVAK 276
P++ HY+ MVD+LG++G ++ A LI D +W LLG CT R N VAE
Sbjct: 738 PQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATA 797
Query: 277 KIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
++ L P +Y LL NVY G W +R M+ +KK PG SW+E +L+
Sbjct: 798 ALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELH 854
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 135/261 (51%), Gaps = 6/261 (2%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G ++H V+ +G +VV S+L+DMY K ES RVF + +KNSVS SA++ G Q
Sbjct: 199 GMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQ 258
Query: 65 TGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
++ F+EM++++ + VLR+CA L+ LRLG ++H ++ D I+
Sbjct: 259 NNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIV 318
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
+A +D+YAKC + A +F N ++N+MI+G++Q G +AL +F + G
Sbjct: 319 RTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL 378
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
D +S GV AC+ + + G + + K + + N +D+ G+ L EA
Sbjct: 379 GFDEISLSGVFRACALVKGLSEGLQIYGLAIKS-SLSLDVCVANAAIDMYGKCQALAEAF 437
Query: 241 TLIENADCRHDSSLWEVLLGA 261
+ + R D+ W ++ A
Sbjct: 438 RVFDEMR-RRDAVSWNAIIAA 457
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 127/246 (51%), Gaps = 8/246 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ G ++HA + + +V ++ +DMY KC + ++ +FD N S +A++ G
Sbjct: 297 LRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITG 356
Query: 62 YCQTGD-FESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q F++++ R M D S V RACA + L G +++ I+ S D
Sbjct: 357 YSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLD 416
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
V + +A +D+Y KC + A ++F +M R+ ++WN++I+ QNG+G E L +F M
Sbjct: 417 VCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLR 476
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC-MVDLLGRAGLL 236
+PD +F +L AC+ G + G + +S+ K C ++D+ + G++
Sbjct: 477 SRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNS--SVGCSLIDMYSKCGMI 533
Query: 237 EEAETL 242
EEAE +
Sbjct: 534 EEAEKI 539
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 120/233 (51%), Gaps = 7/233 (3%)
Query: 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF---- 75
+VV + +++ Y K + +++ F+ M ++ VS +++L GY Q G+ I +F
Sbjct: 113 DVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG 172
Query: 76 REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
RE E D +F I+L+ C+ L LG ++H +R DV+ SAL+D+YAK
Sbjct: 173 REGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFV 232
Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
+ ++F +P +N ++W+++I+G QN AL+ F +M + + VL +C+
Sbjct: 233 ESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA 292
Query: 196 HMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247
+ + G + H ++ ++ + +D+ + +++A+ L +N++
Sbjct: 293 ALSELRLGGQLHAHALKSDFAADGIVR--TATLDMYAKCDNMQDAQILFDNSE 343
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 31/167 (18%)
Query: 62 YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYI----------- 110
Y + F ++ + +F V + CA AL LGK+ H I
Sbjct: 27 YRRVPSFSYFTDFLNQVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVL 86
Query: 111 --------------------RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150
+ +DV+ + +++ Y+K + A+ F MPVR+++
Sbjct: 87 NCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVV 146
Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
+WNSM+SG+ QNG +++ +F DM G + D +F +L CS +
Sbjct: 147 SWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFL 193
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/332 (37%), Positives = 208/332 (62%), Gaps = 4/332 (1%)
Query: 6 KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
K++H + + N+ V ++L+D+Y KCG++ ++ +VF+ M K+SV+ S+++ GY Q
Sbjct: 182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQN 241
Query: 66 GDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
++E + ++R + + L F+ V+ AC+ LAAL GK++H + +V +
Sbjct: 242 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVA 301
Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
S+ VD+YAKCG + ++ IF ++ +NL WN++ISGFA++ R +E + +F+ M + G
Sbjct: 302 SSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMH 361
Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
P+ V+F +LS C H GL++ GR+ F M Y + P + HY+CMVD+LGRAGLL EA
Sbjct: 362 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYE 421
Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
LI++ +S+W LL +C ++N +AE A+K+ EL+P+ ++VLL N+Y A +
Sbjct: 422 LIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQ 481
Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
W + K R L++ VKK+ GKSWI+ K++
Sbjct: 482 WEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVH 513
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 131/261 (50%), Gaps = 6/261 (2%)
Query: 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
+ K H K+I + L G+V + + L++ Y KCG V+ + +VFD ML+++ VS + ++ Y
Sbjct: 79 EAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 138
Query: 64 QTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
+ + IF EM + F+ VL AC K++HC ++ ++
Sbjct: 139 RNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLY 198
Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
+ +AL+DLYAKCG + A Q+F M ++ +TW+SM++G+ QN EEAL ++
Sbjct: 199 VGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMS 258
Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
+ + + V+ ACS++ + G++ A + K + + VD+ + G L E+
Sbjct: 259 LEQNQFTLSSVICACSNLAALIEGKQMHAVICKS-GFGSNVFVASSAVDMYAKCGSLRES 317
Query: 240 ETLIENADCRHDSSLWEVLLG 260
+ + LW ++
Sbjct: 318 YIIFSEVQ-EKNLELWNTIIS 337
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%)
Query: 89 VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN 148
+L+ CA A+ K H + IR DV + + L++ Y+KCG V+ A Q+F M R+
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
L++WN+MI + +N EAL IF +M G K + VLSAC
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 6/163 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L +GK++HA + G NV V SS VDMY KCG + ES+ +F ++ +KN + ++ G
Sbjct: 279 LIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISG 338
Query: 62 YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CK 116
+ + + V+ +F +M++ + +F +L C + G+ G
Sbjct: 339 FAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSP 398
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISG 158
+V+ S +VD+ + G + A+++ +P + W S+++
Sbjct: 399 NVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 441
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 248 bits (633), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 212/340 (62%), Gaps = 5/340 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
++ G+ +H+ VI G + V++SL+ +Y CG V +++VFDKM +K+ V+ ++++ G
Sbjct: 137 VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 196
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
+ + G E + ++ EM + D F+ +L ACA + AL LGK VH I+ ++
Sbjct: 197 FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 256
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
+ + L+DLYA+CG V+ A +F +M +N ++W S+I G A NG G+EA+ +F M +
Sbjct: 257 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMES 316
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
G P ++F+G+L ACSH G++ G ++F M +EY+I+P+IEH+ CMVDLL RAG +
Sbjct: 317 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQV 376
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
++A I++ + + +W LLGACT ++ +AE +I++L+P+ YVLL N+Y
Sbjct: 377 KKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMY 436
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
+ RW+D KIR M GVKK+PG S +E ++++ L
Sbjct: 437 ASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFL 476
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 133/227 (58%), Gaps = 7/227 (3%)
Query: 40 SHRVFDKMLKK-NSVSSSALLQGYCQTGDFESVIRIFREME-----EIDLFSFGIVLRAC 93
+H+VF K+ K N + L++GY + G+ S ++REM E D ++ +++A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153
+A +RLG+ +H IR + ++++L+ LYA CG V A+++F +MP ++L+ WN
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213
S+I+GFA+NG+ EEAL ++ +M G KPD + + +LSAC+ +G + G++ M K
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK- 250
Query: 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
+ + N ++DL R G +EEA+TL + ++ S +++G
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG 297
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 248 bits (633), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 202/330 (61%), Gaps = 4/330 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L++GK++H+ ++ LG ++ ++LVDMY K G + ++ + FD + +++ ++L+ G
Sbjct: 338 LEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISG 397
Query: 62 YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q D E + ++R M+ + + VL+AC+ LA L LGK+VH I+ +
Sbjct: 398 YVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLE 457
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
V I SAL +Y+KCG ++ + +F + P +++++WN+MISG + NG+G+EAL +F++M
Sbjct: 458 VPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLA 517
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G +PD V+F+ ++SACSH G ++RG +F M+ + + PK++HY CMVDLL RAG L+
Sbjct: 518 EGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLK 577
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
EA+ IE+A+ H LW +LL AC + +K+M L +YV L +Y
Sbjct: 578 EAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYT 637
Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
A+GR D ++ M+ +GV K G SWIE
Sbjct: 638 ALGRMRDVERVWKHMRANGVSKEVGCSWIE 667
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 145/263 (55%), Gaps = 12/263 (4%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G++ HA V+ + G++ V++SLV MY K GLV++ +VF M ++N+ + S ++ GY
Sbjct: 137 GRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYAT 196
Query: 65 TGDFESVIRIF----REMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
G E I++F RE EE + F VL + A + LG+++HC I+ V
Sbjct: 197 RGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFV 256
Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
+ +ALV +Y+KC ++ A ++F RN ITW++M++G++QNG EA+++F M
Sbjct: 257 ALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSA 316
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
G KP + +GVL+ACS + ++ G K S + + + +VD+ +AG L +
Sbjct: 317 GIKPSEYTIVGVLNACSDICYLEEG-KQLHSFLLKLGFERHLFATTALVDMYAKAGCLAD 375
Query: 239 AETLIENADC--RHDSSLWEVLL 259
A + DC D +LW L+
Sbjct: 376 AR---KGFDCLQERDVALWTSLI 395
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 116/210 (55%), Gaps = 14/210 (6%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G+++H I GL G V + ++LV MY KC ++E+ ++FD +NS++ SA++ GY Q
Sbjct: 240 GRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQ 299
Query: 65 TGDFESVIRIFREMEEIDLFSFGI---------VLRACAGLAALRLGKEVHCQYIRRSGC 115
G+ +++F M FS GI VL AC+ + L GK++H ++
Sbjct: 300 NGESLEAVKLFSRM-----FSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFE 354
Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
+ + +ALVD+YAK GC+ A + F + R++ W S+ISG+ QN EEAL ++ M
Sbjct: 355 RHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRM 414
Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
G P+ + VL ACS + ++ G++
Sbjct: 415 KTAGIIPNDPTMASVLKACSSLATLELGKQ 444
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 146/268 (54%), Gaps = 13/268 (4%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L G+ VH ++I G + + LV+ Y KCG + ++H +F+ ++ K+ VS ++L+ G
Sbjct: 30 LVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITG 89
Query: 62 YCQTGDFES---VIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
Y Q G S V+++FREM D+ ++ + +A + L + +G++ H ++ S
Sbjct: 90 YSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSS 149
Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
D+ ++++LV +Y K G V+ ++F MP RN TW++M+SG+A GR EEA+++F+
Sbjct: 150 FGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNL 209
Query: 175 M---TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231
E G+ D+V F VLS+ + + GR+ +T + + + N +V +
Sbjct: 210 FLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQ-IHCITIKNGLLGFVALSNALVTMYS 267
Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLL 259
+ L EA + +++ R +S W ++
Sbjct: 268 KCESLNEACKMFDSSGDR-NSITWSAMV 294
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 248 bits (632), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 199/327 (60%), Gaps = 5/327 (1%)
Query: 8 VHAKVITLGLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
+ A I LG+ G +VV +S++ + KCGL+D++ +FD+M ++N VS ++++ G+ + G
Sbjct: 178 IEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNG 237
Query: 67 DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
F+ + +FREM+E D+ F+ +L ACA L A G+ +H +R + I+ +
Sbjct: 238 RFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVT 297
Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
AL+D+Y KCGC++ +F P + L WNSMI G A NG E A+ +F ++ G +P
Sbjct: 298 ALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEP 357
Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
D VSFIGVL+AC+H G + R + F M ++Y I+P I+HY MV++LG AGLLEEAE L
Sbjct: 358 DSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEAL 417
Query: 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302
I+N D+ +W LL AC N +A+R AK + +L PD YVLL N Y + G +
Sbjct: 418 IKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLF 477
Query: 303 NDAFKIRTLMKYSGVKKMPGKSWIEAN 329
+A + R LMK ++K G S IE +
Sbjct: 478 EEAVEQRLLMKERQMEKEVGCSSIEVD 504
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 139/301 (46%), Gaps = 47/301 (15%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMY-GKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
+++ K++HA +I GL + V S ++ ++ ++ VF ++ KN + +++
Sbjct: 38 MRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 GYCQTGDFESVIRIFREM------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
G+ ++ E I IF +M + ++ V +A L R G+++H I+
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGL 157
Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM------------------- 155
D I + ++ +Y CGC+ A +IFL M +++ WNSM
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDE 217
Query: 156 ------------ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
ISGF +NGR ++AL +F +M E KPD + + +L+AC+++G ++G
Sbjct: 218 MPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG 277
Query: 204 RKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
R EY ++ + E ++D+ + G +EE + E A + S ++L
Sbjct: 278 R-----WIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMIL 332
Query: 260 G 260
G
Sbjct: 333 G 333
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 18/180 (10%)
Query: 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
+QG+ +H ++ N +V ++L+DMY KCG ++E VF+ KK ++++ G
Sbjct: 275 EQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGL 334
Query: 63 CQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAAL-------RLGKEVHCQYIR 111
G E + +F E+E E D SF VL ACA + RL KE +Y+
Sbjct: 335 ANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKE---KYMI 391
Query: 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALR 170
K + +V++ G ++ A + MPV + + W+S++S + G E A R
Sbjct: 392 EPSIKHYTL---MVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKR 448
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 248 bits (632), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 201/330 (60%), Gaps = 5/330 (1%)
Query: 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
EVHA+V+ + V ++L+D Y K G V+E+ +VF + K+ V+ SA+L GY QTG
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473
Query: 67 DFESVIRIFREMEE----IDLFSFGIVLRACAGL-AALRLGKEVHCQYIRRSGCKDVIIE 121
+ E+ I++F E+ + + F+F +L CA A++ GK+ H I+ + +
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533
Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
SAL+ +YAK G ++ A ++F + ++L++WNSMISG+AQ+G+ +AL +F +M + K
Sbjct: 534 SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 593
Query: 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241
D V+FIGV +AC+H GL++ G K+F M ++ +I P EH +CMVDL RAG LE+A
Sbjct: 594 MDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 653
Query: 242 LIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301
+IEN S++W +L AC + + A+KI+ +KP+ +YVLL N+Y G
Sbjct: 654 VIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGD 713
Query: 302 WNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
W + K+R LM VKK PG SWIE +K
Sbjct: 714 WQERAKVRKLMNERNVKKEPGYSWIEVKNK 743
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 136/264 (51%), Gaps = 13/264 (4%)
Query: 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
+G +VH V+ GL + V +SL+++Y KCG V ++ +FDK K+ V+ ++++ GY
Sbjct: 212 RGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYA 271
Query: 64 QTG-DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
G D E+ + +F M + SF V++ CA L LR +++HC ++ D
Sbjct: 272 ANGLDLEA-LGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQ 330
Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
I +AL+ Y+KC + A ++F ++ V N+++W +MISGF QN EEA+ +F +M
Sbjct: 331 NIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKR 390
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G +P+ ++ +L+A + +I H + Y + ++D + G +E
Sbjct: 391 KGVRPNEFTYSVILTA---LPVISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVE 445
Query: 238 EAETLIENADCRHDSSLWEVLLGA 261
EA + D + D W +L
Sbjct: 446 EAAKVFSGIDDK-DIVAWSAMLAG 468
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 4/197 (2%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G+++H + I G +V V +SLVD Y K + +VFD+M ++N V+ + L+ GY +
Sbjct: 112 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171
Query: 65 TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
+ V+ +F M+ + + F+F L A G +VH ++ K + +
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
++L++LY KCG V A +F + V++++TWNSMISG+A NG EAL +F M
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291
Query: 181 KPDHVSFIGVLSACSHM 197
+ SF V+ C+++
Sbjct: 292 RLSESSFASVIKLCANL 308
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 132/248 (53%), Gaps = 9/248 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSSSALLQ 60
L+ +++H V+ G + + ++L+ Y KC + ++ R+F ++ N VS +A++
Sbjct: 311 LRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMIS 370
Query: 61 GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
G+ Q E + +F EM+ + F++ ++L A ++ EVH Q ++ + +
Sbjct: 371 GFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYER 426
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
+ +AL+D Y K G V+ A ++F + ++++ W++M++G+AQ G E A+++F ++T
Sbjct: 427 SSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELT 486
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
+GG KP+ +F +L+ C+ K F + R+ + + ++ + + G +
Sbjct: 487 KGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNI 546
Query: 237 EEAETLIE 244
E AE + +
Sbjct: 547 ESAEEVFK 554
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 5/214 (2%)
Query: 40 SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EIDLFSFGIVLRACAG 95
+H +FDK ++ S +LL G+ + G + R+F + E+D F VL+ A
Sbjct: 46 AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105
Query: 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155
L G+++HCQ I+ DV + ++LVD Y K ++F +M RN++TW ++
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165
Query: 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215
ISG+A+N +E L +F M GT+P+ +F L + G+ RG + + K
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN-G 224
Query: 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR 249
+ I N +++L + G + +A L + + +
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+ QGK+ H I L ++ V S+L+ MY K G ++ + VF + +K+ VS ++++ G
Sbjct: 511 MGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISG 570
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q G + +F+EM+ ++D +F V AC + G++ +R CK
Sbjct: 571 YAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVR--DCKI 628
Query: 118 VIIE---SALVDLYAKCGCVDFAHQIFLQMP 145
+ S +VDLY++ G ++ A ++ MP
Sbjct: 629 APTKEHNSCMVDLYSRAGQLEKAMKVIENMP 659
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 248 bits (632), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 199/327 (60%), Gaps = 4/327 (1%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G+++H V+ +G ++ V ++L+D+Y KC +D + ++F ++ KN VS + ++ GY
Sbjct: 367 GEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYEN 426
Query: 65 TGDFESVIRIFRE----MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
G+ +FRE + +F L ACA LA++ LG +VH I+ + K V +
Sbjct: 427 LGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAV 486
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
++L+D+YAKCG + FA +F +M ++ +WN++ISG++ +G G +ALRI D M +
Sbjct: 487 SNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDC 546
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
KP+ ++F+GVLS CS+ GLID+G++ F SM +++ I+P +EHY CMV LLGR+G L++A
Sbjct: 547 KPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAM 606
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
LIE +W +L A N A R A++I+++ P +YVL+ N+Y
Sbjct: 607 KLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAK 666
Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIE 327
+W + IR MK GVKK PG SWIE
Sbjct: 667 QWANVASIRKSMKEMGVKKEPGLSWIE 693
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 138/284 (48%), Gaps = 10/284 (3%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
K VH +++ + V L+ +Y + G + ++ +VF++M K + V S ++ +CQ
Sbjct: 266 AKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQ 325
Query: 65 TGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
G + +F M E + F+ +L CA LG+++H ++ D+ +
Sbjct: 326 NGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYV 385
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
+AL+D+YAKC +D A ++F ++ +N ++WN++I G+ G G +A +F +
Sbjct: 386 SNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQV 445
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
V+F L AC+ + +D G + K K K+ N ++D+ + G ++ A+
Sbjct: 446 SVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAK-KVAVSNSLIDMYAKCGDIKFAQ 504
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
++ + D + W L+ +T H R A +I+++ D
Sbjct: 505 SVFNEMETI-DVASWNALISGYST----HGLGRQALRILDIMKD 543
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 5/257 (1%)
Query: 8 VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
+H+ ++ LG N V ++L++ Y CG VD + VF+ +L K+ V + ++ Y + G
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGY 227
Query: 68 FESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
FE +++ M ++F L+A GL A K VH Q ++ D +
Sbjct: 228 FEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG 287
Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
L+ LY + G + A ++F +MP +++ W+ MI+ F QNG EA+ +F M E P+
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPN 347
Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
+ +L+ C+ +G + + + I N ++D+ + ++ A L
Sbjct: 348 EFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLF 406
Query: 244 ENADCRHDSSLWEVLLG 260
+++ S V++G
Sbjct: 407 AELSSKNEVSWNTVIVG 423
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 1/218 (0%)
Query: 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
K +H ++ G C ++ + L++ Y K G ++ +FD+M ++N+VS L QGY
Sbjct: 67 SAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA 126
Query: 64 QTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
R+ RE E++ F L+ L + +H ++ + + +A
Sbjct: 127 CQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAA 186
Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
L++ Y+ CG VD A +F + ++++ W ++S + +NG E++L++ M G P+
Sbjct: 187 LINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPN 246
Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKI 220
+ +F L A +G D + + K Y + P++
Sbjct: 247 NYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRV 284
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 247 bits (631), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 191/313 (61%), Gaps = 5/313 (1%)
Query: 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
N V ++++D Y + G VD + ++FDKM +++ +S +A++ G+ + G E + FREM+
Sbjct: 139 NSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQ 198
Query: 80 ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
+ D + L AC L AL G VH + + +V + ++L+DLY +CGCV+
Sbjct: 199 ISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVE 258
Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
FA Q+F M R +++WNS+I GFA NG E+L F M E G KPD V+F G L+ACS
Sbjct: 259 FARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACS 318
Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255
H+GL++ G ++F M +YRI P+IEHY C+VDL RAG LE+A L+++ + + +
Sbjct: 319 HVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVI 378
Query: 256 EVLLGACTTFRNAHV-AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
LL AC+ N V AER+ K + +L H +YV+L N+Y A G+W A K+R MK
Sbjct: 379 GSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKG 438
Query: 315 SGVKKMPGKSWIE 327
G+KK PG S IE
Sbjct: 439 LGLKKQPGFSSIE 451
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
K+ + + ++D Y + G VD A ++F +MP R+LI+W +MI+GF + G EEAL F +M
Sbjct: 138 KNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREM 197
Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
G KPD+V+ I L+AC+++G + G H ++++++ ++ N ++DL R G
Sbjct: 198 QISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVS--NSLIDLYCRCG 255
Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDC 285
+E A + N + R S V++G NAH + +K+ E KPD
Sbjct: 256 CVEFARQVFYNMEKRTVVSWNSVIVGFAAN-GNAHESLVYFRKMQEKGFKPDA 307
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 22/176 (12%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L G VH V++ NV V +SL+D+Y +CG V+ + +VF M K+ VS ++++ G
Sbjct: 222 LSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVG 281
Query: 62 YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACA--GLA--ALRLGKEVHCQY---- 109
+ G+ + FR+M+E D +F L AC+ GL LR + + C Y
Sbjct: 282 FAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISP 341
Query: 110 -IRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNG 163
I GC LVDLY++ G ++ A ++ MP++ N + S+++ + +G
Sbjct: 342 RIEHYGC--------LVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHG 389
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 14/182 (7%)
Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
Q ++W S I+ +NGR EA + F DMT G +P+H++FI +LS C G
Sbjct: 30 QSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGC---GDFTS 86
Query: 203 GRKHFASMTKEYRIKPKIEHYNCMV-----DLLGRAGLLEEAETLIENADCRHDSSLWEV 257
G + + Y K ++ + MV + + G ++A + + + + +S W
Sbjct: 87 GSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDK-NSVTWNT 145
Query: 258 LLGACTTFRNAHVAERVAKKIMELKPDCHL-SYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316
++ R+ V A K+ + P+ L S+ + N + G +A M+ SG
Sbjct: 146 MIDG--YMRSGQVDN--AAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISG 201
Query: 317 VK 318
VK
Sbjct: 202 VK 203
>sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protein At3g05340
OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2
Length = 658
Score = 247 bits (631), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 206/335 (61%), Gaps = 4/335 (1%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
R+ +G+++HA + G+ + +ES+L+DMY KCG ++++ +F+ + + VS + +L
Sbjct: 271 RIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILV 330
Query: 61 GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLA----ALRLGKEVHCQYIRRSGCK 116
G Q G E I+ F M + + V+ A G++ +L LGK++H I+R
Sbjct: 331 GLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSG 390
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
+ + + L+++Y+KCG + + +F +MP RN ++WNSMI+ FA++G G AL+++++MT
Sbjct: 391 NTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMT 450
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
KP V+F+ +L ACSH+GLID+GR+ M + + I+P+ EHY C++D+LGRAGLL
Sbjct: 451 TLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLL 510
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
+EA++ I++ + D +W+ LLGAC+ + V E A+++ + PD +++L+ N+Y
Sbjct: 511 KEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIY 570
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
+ G+W + K MK GV K G S IE K
Sbjct: 571 SSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHK 605
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 127/243 (52%), Gaps = 4/243 (1%)
Query: 21 VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-- 78
+VV +SL+ +Y KCG + ++ ++FD+M ++ +S + + G+ + + ES + + M
Sbjct: 90 LVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149
Query: 79 -EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137
D + IVL C + K +H I K++ + + L+ Y KCGC
Sbjct: 150 SGGFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSG 209
Query: 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197
+F M RN+IT ++ISG +N E+ LR+F M G P+ V+++ L+ACS
Sbjct: 210 RGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGS 269
Query: 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
I G++ A + K Y I+ ++ + ++D+ + G +E+A T+ E+ + S+ +
Sbjct: 270 QRIVEGQQIHALLWK-YGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVI 328
Query: 258 LLG 260
L+G
Sbjct: 329 LVG 331
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 136/287 (47%), Gaps = 14/287 (4%)
Query: 6 KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
K +HA I G + V + L+ Y KCG VFD M +N ++ +A++ G +
Sbjct: 175 KMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIEN 234
Query: 66 GDFESVIRIF----REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
E +R+F R + + ++ L AC+G + G+++H + ++ IE
Sbjct: 235 ELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIE 294
Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
SAL+D+Y+KCG ++ A IF + ++ ++ G AQNG EEA++ F M + G +
Sbjct: 295 SALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVE 354
Query: 182 PDHVSFIGVLSACSHMGLIDRGR---KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
D V+SA + ID K S+ + + N ++++ + G L +
Sbjct: 355 ID----ANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTD 410
Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKP 283
++T+ R+ S W ++ A + A ++ +++ +E+KP
Sbjct: 411 SQTVFRRMPKRNYVS-WNSMIAAFARHGHGLAALKLYEEMTTLEVKP 456
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 203/331 (61%), Gaps = 7/331 (2%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+ GK++HA VI G N+ V +S++D+Y +CG + E+ F +M K+ ++ + L+
Sbjct: 229 VTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISE 288
Query: 62 YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
++ E+++ +F+ E + ++F ++ ACA +AAL G+++H + RR K+
Sbjct: 289 LERSDSSEALL-MFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKN 347
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQM-PVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
V + +AL+D+YAKCG + + ++F ++ RNL++W SM+ G+ +G G EA+ +FD M
Sbjct: 348 VELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMV 407
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
G +PD + F+ VLSAC H GL+++G K+F M EY I P + YNC+VDLLGRAG +
Sbjct: 408 SSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKI 467
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFR-NAHVAERVAKKIMELKPDCHLSYVLLDNV 295
EA L+E + D S W +LGAC + N ++ A+K+MELKP +YV+L +
Sbjct: 468 GEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLSYI 527
Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
Y A G+W D ++R +M+ G KK G SWI
Sbjct: 528 YAAEGKWVDFARVRKMMRMMGNKKEAGMSWI 558
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 152/290 (52%), Gaps = 9/290 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESH-RVFDKMLKKNSVSSSALLQ 60
L G VH V+ LG+ G++ V++++++MY C + E+ +F + KN V+ + L+
Sbjct: 127 LAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLIT 186
Query: 61 GYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
G+ GD ++++++M E+ + I +RA A + ++ GK++H I+R
Sbjct: 187 GFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQS 246
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
++ + ++++DLY +CG + A F +M ++LITWN++IS + EAL +F
Sbjct: 247 NLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISEL-ERSDSSEALLMFQRFE 305
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
G P+ +F +++AC+++ ++ G++ + + +E N ++D+ + G +
Sbjct: 306 SQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRR-GFNKNVELANALIDMYAKCGNI 364
Query: 237 EEAETLI-ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPD 284
+++ + E D R+ S +++G + A E K + ++PD
Sbjct: 365 PDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPD 414
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 117/243 (48%), Gaps = 7/243 (2%)
Query: 22 VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM--- 78
++ ++L+ Y + GLV+E+ +FD+M ++ V+ +A++ GY + F EM
Sbjct: 46 ILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQ 105
Query: 79 -EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG-CVDF 136
+ F+ VL++C + L G VH ++ + +++A++++YA C ++
Sbjct: 106 GTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEA 165
Query: 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
A IF + V+N +TW ++I+GF G G L+++ M + + A +
Sbjct: 166 ACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASAS 225
Query: 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE 256
+ + G++ AS+ K + + N ++DL R G L EA+ + + D W
Sbjct: 226 IDSVTTGKQIHASVIKR-GFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDK-DLITWN 283
Query: 257 VLL 259
L+
Sbjct: 284 TLI 286
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 87/185 (47%), Gaps = 7/185 (3%)
Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
+ +Y K I+ + L+ Y + G V+ A +F +MP R+++ W +MI+G+A +
Sbjct: 33 NTEYPPYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYN 92
Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225
A F +M + GT P+ + VL +C +M ++ G + K ++ + N
Sbjct: 93 ARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVK-LGMEGSLYVDNA 151
Query: 226 MVDLLGRAGLLEEAETLI-ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM----E 280
M+++ + EA LI + ++D + W L+ T + ++ K+++ E
Sbjct: 152 MMNMYATCSVTMEAACLIFRDIKVKNDVT-WTTLITGFTHLGDGIGGLKMYKQMLLENAE 210
Query: 281 LKPDC 285
+ P C
Sbjct: 211 VTPYC 215
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 200/335 (59%), Gaps = 5/335 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
LK G+E+H +I G + +++DMY KCG ++ ++ +F+++ K++ VS ++++
Sbjct: 457 LKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITR 516
Query: 62 YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Q+ + + I IFR+M D S L ACA L + GK +H I+ S D
Sbjct: 517 CAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASD 576
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
V ES L+D+YAKCG + A +F M +N+++WNS+I+ +G+ +++L +F +M E
Sbjct: 577 VYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVE 636
Query: 178 -GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
G +PD ++F+ ++S+C H+G +D G + F SMT++Y I+P+ EHY C+VDL GRAG L
Sbjct: 637 KSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRL 696
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
EA +++ D+ +W LLGAC +N +AE + K+M+L P YVL+ N +
Sbjct: 697 TEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAH 756
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
W K+R+LMK V+K+PG SWIE N +
Sbjct: 757 ANAREWESVTKVRSLMKEREVQKIPGYSWIEINKR 791
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 136/280 (48%), Gaps = 10/280 (3%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G ++H V+ G+ +++SL+ MY KCG D++ ++F M + ++V+ + ++ GY Q
Sbjct: 258 GVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQ 317
Query: 65 TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
+G E + F EM D +F +L + + L K++HC +R S D+ +
Sbjct: 318 SGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFL 377
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
SAL+D Y KC V A IF Q +++ + +MISG+ NG ++L +F + +
Sbjct: 378 TSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKI 437
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNC-MVDLLGRAGLLEE 238
P+ ++ + +L + + GR+ H + K + + I C ++D+ + G +
Sbjct: 438 SPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNI---GCAVIDMYAKCGRMNL 494
Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278
A + E + D W ++ C N A + +++
Sbjct: 495 AYEIFERLS-KRDIVSWNSMITRCAQSDNPSAAIDIFRQM 533
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 107/188 (56%), Gaps = 4/188 (2%)
Query: 12 VITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESV 71
V +LG+ N V SSL+ Y + G +D ++FD++L+K+ V + +L GY + G +SV
Sbjct: 164 VSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSV 223
Query: 72 IRIFR--EMEEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127
I+ F M++I + +F VL CA + LG ++H + + I+++L+ +
Sbjct: 224 IKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSM 283
Query: 128 YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187
Y+KCG D A ++F M + +TWN MISG+ Q+G EE+L F +M G PD ++F
Sbjct: 284 YSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITF 343
Query: 188 IGVLSACS 195
+L + S
Sbjct: 344 SSLLPSVS 351
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 136/268 (50%), Gaps = 12/268 (4%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ K++H ++ + ++ + S+L+D Y KC V + +F + + V +A++ G
Sbjct: 356 LEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISG 415
Query: 62 YCQTGDFESVIRIFREM-------EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
Y G + + +FR + EI L S +L L AL+LG+E+H I++
Sbjct: 416 YLHNGLYIDSLEMFRWLVKVKISPNEITLVS---ILPVIGILLALKLGRELHGFIIKKGF 472
Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
I A++D+YAKCG ++ A++IF ++ R++++WNSMI+ AQ+ A+ IF
Sbjct: 473 DNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQ 532
Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
M G D VS LSAC+++ G+ M K + + + + ++D+ + G
Sbjct: 533 MGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIK-HSLASDVYSESTLIDMYAKCG 591
Query: 235 LLEEAETLIENADCRHDSSLWEVLLGAC 262
L+ A + + ++ S W ++ AC
Sbjct: 592 NLKAAMNVFKTMKEKNIVS-WNSIIAAC 618
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 157/342 (45%), Gaps = 45/342 (13%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNSVSS-SALL 59
L+QGK+VHA +I + G+ + ++ MY CG + ++F ++ L+++S+ ++++
Sbjct: 51 LRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSII 110
Query: 60 QGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG- 114
+ + G + + +M D+ +F +++AC L + G + + G
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFK-GIDFLSDTVSSLGM 169
Query: 115 -CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
C + + S+L+ Y + G +D ++F ++ ++ + WN M++G+A+ G + ++ F
Sbjct: 170 DCNE-FVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFS 228
Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK---------------------------- 205
M P+ V+F VLS C+ LID G +
Sbjct: 229 VMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCG 288
Query: 206 HFASMTKEYRIKPKIE--HYNCMVDLLGRAGLLEEAETLIE---NADCRHDSSLWEVLLG 260
F +K +R+ + + +NCM+ ++GL+EE+ T ++ D+ + LL
Sbjct: 289 RFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLP 348
Query: 261 ACTTFRNAHVAERVAKKIM--ELKPDCHLSYVLLDNVYRAVG 300
+ + F N +++ IM + D L+ L+D ++ G
Sbjct: 349 SVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRG 390
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 76 REMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
R +EE ++L+AC+ LR GK+VH I S D + ++ +YA CG
Sbjct: 28 RFLEETIPRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFS 87
Query: 136 FAHQIFLQMPVR--NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193
++F ++ +R ++ WNS+IS F +NG +AL + M G PD +F ++ A
Sbjct: 88 DCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKA 147
Query: 194 C 194
C
Sbjct: 148 C 148
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 200/336 (59%), Gaps = 5/336 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L K++H + GL ++ S+L+D+Y C + +S VFD+M K+ V +++ G
Sbjct: 470 LGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAG 529
Query: 62 YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q + E + +F E+ E D F+F ++ A LA+++LG+E HCQ ++R +
Sbjct: 530 YVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECN 589
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
I +AL+D+YAKCG + AH+ F R+++ WNS+IS +A +G G++AL++ + M
Sbjct: 590 PYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMS 649
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G +P++++F+GVLSACSH GL++ G K F M + + I+P+ EHY CMV LLGRAG L
Sbjct: 650 EGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLN 708
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
+A LIE + + +W LL C N +AE A+ + P S+ +L N+Y
Sbjct: 709 KARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYA 768
Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
+ G W +A K+R MK GV K PG+SWI N +++
Sbjct: 769 SKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVH 804
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 164/324 (50%), Gaps = 14/324 (4%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G +VHA I L + V +SL+DMY KC + ++ +VFD + V +A+++GY +
Sbjct: 369 GTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSR 428
Query: 65 TG---DFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
G + + IFR+M L +F +LRA A L +L L K++H + D
Sbjct: 429 LGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLD 488
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ SAL+D+Y+ C C+ + +F +M V++L+ WNSM +G+ Q EEAL +F ++
Sbjct: 489 IFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQL 548
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
+PD +F +++A ++ + G++ H + + P I N ++D+ + G
Sbjct: 549 SRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYIT--NALLDMYAKCGSP 606
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDN 294
E+A ++A R D W ++ + A ++ +K+M ++P+ ++++V + +
Sbjct: 607 EDAHKAFDSAASR-DVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPN-YITFVGVLS 664
Query: 295 VYRAVGRWNDAFKIRTLMKYSGVK 318
G D K LM G++
Sbjct: 665 ACSHAGLVEDGLKQFELMLRFGIE 688
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 133/260 (51%), Gaps = 21/260 (8%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ GK++HA ++ GL + + + L+D Y KCG V +H++F+ M KN +S + LL G
Sbjct: 265 LEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSG 324
Query: 62 YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q + + +F M + D+++ +L +CA L AL G +VH I+ + D
Sbjct: 325 YKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGND 384
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG---EEALRIFDD 174
+ ++L+D+YAKC C+ A ++F +++ +N+MI G+++ G EAL IF D
Sbjct: 385 SYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRD 444
Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
M +P ++F+ +L A + + + ++ M K Y +D+ +
Sbjct: 445 MRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFK----------YGLNLDIFAGSA 494
Query: 235 LLEEAETLIENADCRHDSSL 254
L++ + N C DS L
Sbjct: 495 LID----VYSNCYCLKDSRL 510
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 130/246 (52%), Gaps = 13/246 (5%)
Query: 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
++ + ++ G +V V + L+D Y K G +D + VFD + +K++V+ + ++ G + G
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228
Query: 67 DFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
+++F ++ E D + VL AC+ L L GK++H +R D + +
Sbjct: 229 RSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMN 288
Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
L+D Y KCG V AH++F MP +N+I+W +++SG+ QN +EA+ +F M++ G KP
Sbjct: 289 VLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKP 348
Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEE 238
D + +L++C+ + + F + Y IK + + N ++D+ + L +
Sbjct: 349 DMYACSSILTSCASLHALG-----FGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTD 403
Query: 239 AETLIE 244
A + +
Sbjct: 404 ARKVFD 409
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 131/262 (50%), Gaps = 15/262 (5%)
Query: 8 VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
VH ++I GL + + + L+++Y + G + + +VF+KM ++N VS S ++ G
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125
Query: 68 FESVIRIFREM--------EEIDLFSFGIVLRACAGLAALRLGKEVHCQ-YIRRSGC-KD 117
+E + +F E E L SF ++AC+GL Q ++ +SG +D
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSF---IQACSGLDGRGRWMVFQLQSFLVKSGFDRD 182
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
V + + L+D Y K G +D+A +F +P ++ +TW +MISG + GR +L++F + E
Sbjct: 183 VYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLME 242
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
PD VLSACS + ++ G++ A + + Y ++ N ++D + G +
Sbjct: 243 DNVVPDGYILSTVLSACSILPFLEGGKQIHAHILR-YGLEMDASLMNVLIDSYVKCGRVI 301
Query: 238 EAETLIENADCRHDSSLWEVLL 259
A L ++ S W LL
Sbjct: 302 AAHKLFNGMPNKNIIS-WTTLL 322
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 18/235 (7%)
Query: 65 TGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124
DF S I I E F+ + LRA L L VH Q I D + + L
Sbjct: 32 NADFPSTIGIRGRRE----FARLLQLRASDDL--LHYQNVVHGQIIVWGLELDTYLSNIL 85
Query: 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG-GTKPD 183
++LY++ G + +A ++F +MP RNL++W++M+S +G EE+L +F + P+
Sbjct: 86 INLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPN 145
Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH----YNCMVDLLGRAGLLEEA 239
+ ACS GL RGR + + + +K + ++D + G ++ A
Sbjct: 146 EYILSSFIQACS--GLDGRGRWMVFQL-QSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYA 202
Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCH-LSYVL 291
L+ +A + W ++ C ++V+ ++ ++ME + PD + LS VL
Sbjct: 203 R-LVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVL 256
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 197/341 (57%), Gaps = 8/341 (2%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L QG+ +H+ I LG ++ ++ + MY K + +FD M + VS + ++ G
Sbjct: 272 LTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISG 331
Query: 62 YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
Y + GD + + +F M E+ DL + ++ C +L GK + + GCK
Sbjct: 332 YAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDAR-ADIYGCKR 390
Query: 117 -DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
+V+I +AL+D+Y+KCG + A IF P + ++TW +MI+G+A NG EAL++F M
Sbjct: 391 DNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKM 450
Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
+ KP+H++F+ VL AC+H G +++G ++F M + Y I P ++HY+CMVDLLGR G
Sbjct: 451 IDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGK 510
Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
LEEA LI N + D+ +W LL AC RN +AE+ A+ + L+P YV + N+
Sbjct: 511 LEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANI 570
Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDL 336
Y A G W+ +IR++MK +KK PG+S I+ N K NH
Sbjct: 571 YAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGK-NHSF 610
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 16/222 (7%)
Query: 74 IFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129
+FREM+ E + F+F V +ACA LA + + VH I+ DV + +A VD++
Sbjct: 39 LFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFV 98
Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
KC VD+A ++F +MP R+ TWN+M+SGF Q+G ++A +F +M PD V+ +
Sbjct: 99 KCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMT 158
Query: 190 VLSACSHMGLIDRGRKHFASMTK---EYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
++ + S ++ K +M + ++ N + G+ G L+ A+ + E
Sbjct: 159 LIQSAS----FEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAI 214
Query: 247 DCRHDSSL--WEVLLGACTTFRNAHVAERVAKKIM--ELKPD 284
D R D ++ W + A + F A A + ++ E KPD
Sbjct: 215 D-RGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPD 255
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 109/203 (53%), Gaps = 6/203 (2%)
Query: 8 VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
VHA +I +V V ++ VDM+ KC VD + +VF++M ++++ + +A+L G+CQ+G
Sbjct: 74 VHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGH 133
Query: 68 FESVIRIFREM--EEI--DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
+ +FREM EI D + ++++ + +L+L + +H IR V + +
Sbjct: 134 TDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANT 193
Query: 124 LVDLYAKCGCVDFAHQIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181
+ Y KCG +D A +F + R +++WNSM ++ G +A ++ M K
Sbjct: 194 WISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFK 253
Query: 182 PDHVSFIGVLSACSHMGLIDRGR 204
PD +FI + ++C + + +GR
Sbjct: 254 PDLSTFINLAASCQNPETLTQGR 276
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 121/251 (48%), Gaps = 6/251 (2%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALL 59
LK + +HA I LG+ V V ++ + YGKCG +D + VF+ + + + VS +++
Sbjct: 169 LKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMF 228
Query: 60 QGYCQTGD----FESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
+ Y G+ F + RE + DL +F + +C L G+ +H I
Sbjct: 229 KAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTD 288
Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
+D+ + + +Y+K A +F M R ++W MISG+A+ G +EAL +F M
Sbjct: 289 QDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAM 348
Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
+ G KPD V+ + ++S C G ++ G+ A + + N ++D+ + G
Sbjct: 349 IKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGS 408
Query: 236 LEEAETLIENA 246
+ EA + +N
Sbjct: 409 IHEARDIFDNT 419
>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein At2g37320
OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500
Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 206/334 (61%), Gaps = 6/334 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+ G H + G +V + SSLV +Y G V+ +++VF++M ++N VS +A++ G
Sbjct: 136 FRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISG 195
Query: 62 YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
+ Q + ++++ +M + + ++F +L AC G AL G+ VHCQ +
Sbjct: 196 FAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSY 255
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD-DMT 176
+ I ++L+ +Y KCG + A +IF Q +++++WNSMI+G+AQ+G +A+ +F+ M
Sbjct: 256 LHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMP 315
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
+ GTKPD ++++GVLS+C H GL+ GRK F M E+ +KP++ HY+C+VDLLGR GLL
Sbjct: 316 KSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMA-EHGLKPELNHYSCLVDLLGRFGLL 374
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
+EA LIEN + +S +W LL +C + R A++ + L+PDC ++V L N+Y
Sbjct: 375 QEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRAAEERLMLEPDCAATHVQLANLY 434
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
+VG W +A +R LMK G+K PG SWIE N+
Sbjct: 435 ASVGYWKEAATVRKLMKDKGLKTNPGCSWIEINN 468
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 130/281 (46%), Gaps = 17/281 (6%)
Query: 44 FDKMLKKNSVSS---SALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALR 100
FD KN VSS +L+ +S + R+ D + +R+C R
Sbjct: 86 FDLSRTKNGVSSVLEEVMLE--------DSSSSVKRDGWSFDAYGLSSAVRSCGLNRDFR 137
Query: 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFA 160
G HC ++ DV + S+LV LY G V+ A+++F +MP RN+++W +MISGFA
Sbjct: 138 TGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFA 197
Query: 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI 220
Q R + L+++ M + + P+ +F +LSAC+ G + +GR T +K +
Sbjct: 198 QEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGRS-VHCQTLHMGLKSYL 256
Query: 221 EHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
N ++ + + G L++A + + + D W ++ A A + + +M
Sbjct: 257 HISNSLISMYCKCGDLKDAFRIFDQFSNK-DVVSWNSMIAGYAQHGLAMQAIELFELMMP 315
Query: 281 ---LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318
KPD ++Y+ + + R G + K LM G+K
Sbjct: 316 KSGTKPDA-ITYLGVLSSCRHAGLVKEGRKFFNLMAEHGLK 355
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 245 bits (625), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 208/370 (56%), Gaps = 39/370 (10%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCG-------------------------- 35
L G+ +H VI GL + V S+++DMYGK G
Sbjct: 268 LNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITG 327
Query: 36 -----LVDESHRVFD----KMLKKNSVSSSALLQGYCQTGDFESVIRIFREME----EID 82
LVD++ +F+ + ++ N VS ++++ G Q G + +FREM+ + +
Sbjct: 328 LSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPN 387
Query: 83 LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142
+ +L AC +AAL G+ H +R +V + SAL+D+YAKCG ++ + +F
Sbjct: 388 HVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFN 447
Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
MP +NL+ WNS+++GF+ +G+ +E + IF+ + KPD +SF +LSAC +GL D
Sbjct: 448 MMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDE 507
Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262
G K+F M++EY IKP++EHY+CMV+LLGRAG L+EA LI+ DS +W LL +C
Sbjct: 508 GWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSC 567
Query: 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322
N +AE A+K+ L+P+ +YVLL N+Y A G W + IR M+ G+KK PG
Sbjct: 568 RLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPG 627
Query: 323 KSWIEANSKL 332
SWI+ +++
Sbjct: 628 CSWIQVKNRV 637
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 166/387 (42%), Gaps = 79/387 (20%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
K GK++H GL + V+ S+ MY +CG + ++ +VFD+M K+ V+ SALL
Sbjct: 132 FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCA 191
Query: 62 YCQTGDFESVIRIFREME----EIDLFSF-GI---------------------------- 88
Y + G E V+RI EME E ++ S+ GI
Sbjct: 192 YARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPD 251
Query: 89 ------VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC----------- 131
VL + L +G+ +H I++ KD + SA++D+Y K
Sbjct: 252 QVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFN 311
Query: 132 --------------------GCVDFAHQIF----LQMPVRNLITWNSMISGFAQNGRGEE 167
G VD A ++F Q N+++W S+I+G AQNG+ E
Sbjct: 312 QFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE 371
Query: 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227
AL +F +M G KP+HV+ +L AC ++ + GR + + + + + ++
Sbjct: 372 ALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALI 430
Query: 228 DLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELKPDC 285
D+ + G + ++ ++ N + W L+ + A + + +M LKPD
Sbjct: 431 DMYAKCGRINLSQ-IVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD- 488
Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLM 312
+S+ L + VG ++ +K +M
Sbjct: 489 FISFTSLLSACGQVGLTDEGWKYFKMM 515
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 120/272 (44%), Gaps = 50/272 (18%)
Query: 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
+ HA+++ G + + + L+ Y +++ V + S S+L+ +
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 67 DFESVIRIFREMEEIDLFSFGIV---------LRACAGLAALRLGKEVHC---------- 107
F I +F M FS G++ + CA L+A ++GK++HC
Sbjct: 96 LFTQSIGVFSRM-----FSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD 150
Query: 108 ---------QYIR------------RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
Y+R R KDV+ SAL+ YA+ GC++ +I +M
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES 210
Query: 147 R----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202
N+++WN ++SGF ++G +EA+ +F + G PD V+ VL + +++
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNM 270
Query: 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
GR + K+ +K K + M+D+ G++G
Sbjct: 271 GRLIHGYVIKQGLLKDKCV-ISAMIDMYGKSG 301
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 244 bits (623), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 199/333 (59%), Gaps = 5/333 (1%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G+ VH + G +V V SSLVDMY KCG + + ++FD+M ++N V+ S ++ GY Q
Sbjct: 135 GRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQ 194
Query: 65 TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
G+ E + +F+E ++ +SF V+ CA L LG+++H I+ S +
Sbjct: 195 MGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFV 254
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
S+LV LY+KCG + A+Q+F ++PV+NL WN+M+ +AQ+ ++ + +F M G
Sbjct: 255 GSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGM 314
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
KP+ ++F+ VL+ACSH GL+D GR +F M KE RI+P +HY +VD+LGRAG L+EA
Sbjct: 315 KPNFITFLNVLNACSHAGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGRAGRLQEAL 373
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
+I N S+W LL +CT +N +A A K+ EL P ++ L N Y A G
Sbjct: 374 EVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADG 433
Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
R+ DA K R L++ G KK G SW+E +K++
Sbjct: 434 RFEDAAKARKLLRDRGEKKETGLSWVEERNKVH 466
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 116/206 (56%), Gaps = 4/206 (1%)
Query: 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
+G ++H V+ GL +V ++L++ Y K L +S R F+ +K+S + S+++ +
Sbjct: 33 KGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFA 92
Query: 64 QTGDFESVIRIFREMEEIDLFSFGIVL----RACAGLAALRLGKEVHCQYIRRSGCKDVI 119
Q + ++M +L VL ++CA L+ +G+ VHC ++ DV
Sbjct: 93 QNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVF 152
Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
+ S+LVD+YAKCG + +A ++F +MP RN++TW+ M+ G+AQ G EEAL +F +
Sbjct: 153 VGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFEN 212
Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK 205
+ SF V+S C++ L++ GR+
Sbjct: 213 LAVNDYSFSSVISVCANSTLLELGRQ 238
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 19/205 (9%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ G+++H I + V SSLV +Y KCG+ + +++VF+++ KN +A+L+
Sbjct: 233 LELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKA 292
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q + VI +F+ M+ + + +F VL AC+ + G+ Q K+
Sbjct: 293 YAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQM------KE 346
Query: 118 VIIE------SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-WNSMISGFAQNGRGEEALR 170
IE ++LVD+ + G + A ++ MP+ + W ++++ + E A
Sbjct: 347 SRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAF 406
Query: 171 IFDDMTEGGTKPD--HVSFIGVLSA 193
D + E G H+S +A
Sbjct: 407 AADKVFELGPVSSGMHISLSNAYAA 431
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 197/336 (58%), Gaps = 4/336 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ G +VH +I GL NV V SSL+D+Y KCGL + + +VF M +N V+ ++++
Sbjct: 492 LRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISC 551
Query: 62 YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y + E I +F M +F S VL A + A+L GK +H +R D
Sbjct: 552 YSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSD 611
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+++AL+D+Y KCG +A IF +M ++LITWN MI G+ +G AL +FD+M +
Sbjct: 612 THLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKK 671
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G PD V+F+ ++SAC+H G ++ G+ F M ++Y I+P +EHY MVDLLGRAGLLE
Sbjct: 672 AGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLE 731
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
EA + I+ DSS+W LL A T N + A+K++ ++P+ +YV L N+Y
Sbjct: 732 EAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYM 791
Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
G N+A K+ LMK G+ K PG SWIE + + N
Sbjct: 792 EAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTN 827
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 138/262 (52%), Gaps = 10/262 (3%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
GK VHA++ + +ES+L+ +Y KCG +++ VF M +K+ V+ +L+ G C+
Sbjct: 392 GKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCK 451
Query: 65 TGDFESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
G F+ +++F +M++ D V ACAGL ALR G +VH I+ +V
Sbjct: 452 NGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNV 511
Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
+ S+L+DLY+KCG + A ++F M N++ WNSMIS +++N E ++ +F+ M
Sbjct: 512 FVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQ 571
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
G PD VS VL A S + +G K T I N ++D+ + G +
Sbjct: 572 GIFPDSVSITSVLVAISSTASLLKG-KSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKY 630
Query: 239 AETLIENADCRHDSSL-WEVLL 259
AE + + +H S + W +++
Sbjct: 631 AENIFKKM--QHKSLITWNLMI 650
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 126/241 (52%), Gaps = 7/241 (2%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G+++H V+ +GL + V +SL+ MY KCG+V E+ VF ++ K +A++ Y +
Sbjct: 291 GRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAE 350
Query: 65 TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
S + +F M + D F+ V+ C+ L GK VH + +R I
Sbjct: 351 NDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTI 410
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT--EG 178
ESAL+ LY+KCGC A+ +F M ++++ W S+ISG +NG+ +EAL++F DM +
Sbjct: 411 ESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDD 470
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
KPD V +AC+ + + G + SM K + + + ++DL + GL E
Sbjct: 471 SLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVL-NVFVGSSLIDLYSKCGLPEM 529
Query: 239 A 239
A
Sbjct: 530 A 530
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 24/279 (8%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSS---- 56
L GK +H V+ LG + + +SLV+MY KCG +D + +VFD + S S+
Sbjct: 75 NLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVT 134
Query: 57 ---ALLQGYCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRL--GKEVHC 107
+++ GY + F+ + FR M D FS IV+ R GK++H
Sbjct: 135 VWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHG 194
Query: 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGE 166
+R S D +++AL+D+Y K G A ++F+++ + N++ WN MI GF +G E
Sbjct: 195 FMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICE 254
Query: 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC- 225
+L ++ K SF G L ACS GR+ + K + + Y C
Sbjct: 255 SSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVK---MGLHNDPYVCT 311
Query: 226 -MVDLLGRAGLLEEAETLIENADCRHDSSL--WEVLLGA 261
++ + + G++ EAET+ C D L W ++ A
Sbjct: 312 SLLSMYSKCGMVGEAETVFS---CVVDKRLEIWNAMVAA 347
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 116/217 (53%), Gaps = 5/217 (2%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALL 59
R ++GK++H ++ L + ++++L+DMY K GL ++ RVF ++ K N V + ++
Sbjct: 185 RREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMI 244
Query: 60 QGYCQTGDFESVIRIF--REMEEIDLFS--FGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
G+ +G ES + ++ + + L S F L AC+ G+++HC ++
Sbjct: 245 VGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLH 304
Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
D + ++L+ +Y+KCG V A +F + + L WN+M++ +A+N G AL +F M
Sbjct: 305 NDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFM 364
Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
+ PD + V+S CS +GL + G+ A + K
Sbjct: 365 RQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFK 401
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 106/231 (45%), Gaps = 17/231 (7%)
Query: 43 VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLA 97
V D + S++S ++ Q G++ + ++ + + +F+F +L+AC+ L
Sbjct: 17 VADSYISPASINSG--IRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALT 74
Query: 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF-------LQMPVRNLI 150
L GK +H + D I ++LV++Y KCG +D+A Q+F + R++
Sbjct: 75 NLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVT 134
Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR--GRKHFA 208
WNSMI G+ + R +E + F M G +PD S V+S G R G++
Sbjct: 135 VWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHG 194
Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
M + + ++D+ + GL +A + + + + LW V++
Sbjct: 195 FMLRN-SLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMI 244
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/343 (39%), Positives = 188/343 (54%), Gaps = 16/343 (4%)
Query: 2 LKQGKEVHAKVITL-------GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK--NS 52
L GKE+H I G +V + L+DMY KC VD + +FD + K +
Sbjct: 381 LMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDV 440
Query: 53 VSSSALLQGYCQTGDFESVIRIFREMEEID------LFSFGIVLRACAGLAALRLGKEVH 106
V+ + ++ GY Q GD + + EM E D F+ L ACA LAALR+GK++H
Sbjct: 441 VTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIH 500
Query: 107 CQYIR-RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165
+R + + + + L+D+YAKCG + A +F M +N +TW S+++G+ +G G
Sbjct: 501 AYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYG 560
Query: 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225
EEAL IFD+M G K D V+ + VL ACSH G+ID+G ++F M + + P EHY C
Sbjct: 561 EEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYAC 620
Query: 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285
+VDLLGRAG L A LIE +W L C + E A+KI EL +
Sbjct: 621 LVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNH 680
Query: 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
SY LL N+Y GRW D +IR+LM++ GVKK PG SW+E
Sbjct: 681 DGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEG 723
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 151/306 (49%), Gaps = 50/306 (16%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
GK++H +T + N+ V + LVDMY KCG++DE++ VF M K+ VS +A++ GY Q
Sbjct: 248 GKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQ 307
Query: 65 TGDFESVIRIFREMEE------------------------------IDLFSFGI------ 88
G FE +R+F +M+E + S GI
Sbjct: 308 IGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVT 367
Query: 89 ---VLRACAGLAALRLGKEVHCQYI------RRSGCKDV-IIESALVDLYAKCGCVDFAH 138
VL CA + AL GKE+HC I R++G D ++ + L+D+YAKC VD A
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTAR 427
Query: 139 QIF--LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG--TKPDHVSFIGVLSAC 194
+F L R+++TW MI G++Q+G +AL + +M E T+P+ + L AC
Sbjct: 428 AMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVAC 487
Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
+ + + G++ A + + + NC++D+ + G + +A + +N +++ +
Sbjct: 488 ASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTW 547
Query: 255 WEVLLG 260
++ G
Sbjct: 548 TSLMTG 553
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 159/330 (48%), Gaps = 51/330 (15%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G+ HA + G NV V ++LV MY +C + ++ +VFD+M + VS +++++ Y +
Sbjct: 146 GESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAK 205
Query: 65 TGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
G + + +F M D + VL CA L LGK++HC + +++
Sbjct: 206 LGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMF 265
Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE-- 177
+ + LVD+YAKCG +D A+ +F M V+++++WN+M++G++Q GR E+A+R+F+ M E
Sbjct: 266 VGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEK 325
Query: 178 ---------------------------------GGTKPDHVSFIGVLSACSHMGLIDRGR 204
G KP+ V+ I VLS C+ +G + G+
Sbjct: 326 IKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGK 385
Query: 205 KHFASMTKEYRIKPKIEHY-------NCMVDLLGRAGLLEEAETLIENADCRH-DSSLWE 256
+ K Y I + + N ++D+ + ++ A + ++ + D W
Sbjct: 386 EIHCYAIK-YPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWT 444
Query: 257 VLLGACTTFRNAHVAERVAKKIMELKPDCH 286
V++G + +A+ A + ++ E DC
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFE--EDCQ 472
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 149/289 (51%), Gaps = 12/289 (4%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS--VSSSALL 59
+ Q K +H K+++ G+ + + S L+ Y G + + + + ++ ++L+
Sbjct: 41 ISQVKLIHQKLLSFGIL-TLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLI 99
Query: 60 QGYCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
+ Y G + +F M + D ++F V +AC ++++R G+ H +
Sbjct: 100 RSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFI 159
Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
+V + +ALV +Y++C + A ++F +M V ++++WNS+I +A+ G+ + AL +F M
Sbjct: 160 SNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRM 219
Query: 176 T-EGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRA 233
T E G +PD+++ + VL C+ +G G++ H ++T E + + NC+VD+ +
Sbjct: 220 TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSE--MIQNMFVGNCLVDMYAKC 277
Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282
G+++EA T+ N + D W ++ + A R+ +K+ E K
Sbjct: 278 GMMDEANTVFSNMSVK-DVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEK 325
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/361 (35%), Positives = 207/361 (57%), Gaps = 35/361 (9%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
GK+VH + G +VV E++L+DMY K + ++H+VFD+M +++ +S ++LL GY +
Sbjct: 128 GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYAR 187
Query: 65 TGD-------------------------------FESVIRIFREME----EIDLFSFGIV 89
G + + FREM+ E D S V
Sbjct: 188 LGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISV 247
Query: 90 LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
L +CA L +L LGK +H RR K + +AL+++Y+KCG + A Q+F QM +++
Sbjct: 248 LPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDV 307
Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
I+W++MISG+A +G A+ F++M KP+ ++F+G+LSACSH+G+ G ++F
Sbjct: 308 ISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDM 367
Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
M ++Y+I+PKIEHY C++D+L RAG LE A + + + DS +W LL +C T N
Sbjct: 368 MRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLD 427
Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
VA ++EL+P+ +YVLL N+Y +G+W D ++R +++ +KK PG S IE N
Sbjct: 428 VALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVN 487
Query: 330 S 330
+
Sbjct: 488 N 488
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 170/347 (48%), Gaps = 43/347 (12%)
Query: 6 KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT 65
K+++A +I GL + + + +VD K +D + R+F+++ N +++++ Y
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 66 GDFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
+ VIRI++++ E D F+F + ++CA L + LGK+VH + V+
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVT 146
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE-------------- 166
E+AL+D+Y K + AH++F +M R++I+WNS++SG+A+ G+ +
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTI 206
Query: 167 -----------------EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK-HFA 208
EA+ F +M G +PD +S I VL +C+ +G ++ G+ H
Sbjct: 207 VSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLY 266
Query: 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268
+ + + + + N ++++ + G++ +A L + + D W ++ NA
Sbjct: 267 AERRGFLKQTGV--CNALIEMYSKCGVISQAIQLFGQMEGK-DVISWSTMISGYAYHGNA 323
Query: 269 HVAERVAKKIM--ELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313
H A ++ ++KP+ ++++ L + VG W + + +M+
Sbjct: 324 HGAIETFNEMQRAKVKPNG-ITFLGLLSACSHVGMWQEGLRYFDMMR 369
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 8/183 (4%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ GK +H G V ++L++MY KCG++ ++ ++F +M K+ +S S ++ G
Sbjct: 257 LELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISG 316
Query: 62 YCQTGDFESVIRIFREMEEIDLFSFGI----VLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y G+ I F EM+ + GI +L AC+ + + G + +R+ +
Sbjct: 317 YAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLR-YFDMMRQDYQIE 375
Query: 118 VIIE--SALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDD 174
IE L+D+ A+ G ++ A +I MP++ + W S++S G + AL D
Sbjct: 376 PKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDH 435
Query: 175 MTE 177
+ E
Sbjct: 436 LVE 438
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 242 bits (617), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 198/337 (58%), Gaps = 18/337 (5%)
Query: 8 VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
+H V+ GL + V+++L+DMY + G +D + R+F KM ++ V+ + ++ GY +
Sbjct: 427 IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 486
Query: 68 FESVIRIFREMEEIDL---------------FSFGIVLRACAGLAALRLGKEVHCQYIRR 112
E + + +M+ ++ + +L +CA L+AL GKE+H I+
Sbjct: 487 HEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN 546
Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
+ DV + SALVD+YAKCGC+ + ++F Q+P +N+ITWN +I + +G G+EA+ +
Sbjct: 547 NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLL 606
Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
M G KP+ V+FI V +ACSH G++D G + F M +Y ++P +HY C+VDLLGR
Sbjct: 607 RMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGR 666
Query: 233 AGLLEEAETLIENADCR--HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYV 290
AG ++EA L+ N R + + W LLGA N + E A+ +++L+P+ YV
Sbjct: 667 AGRIKEAYQLM-NMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYV 725
Query: 291 LLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327
LL N+Y + G W+ A ++R MK GV+K PG SWIE
Sbjct: 726 LLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 9/219 (4%)
Query: 2 LKQGKEVHAKVITLGL-CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
++ GK++HA V G +V V ++LV++Y KCG ++VFD++ ++N VS ++L+
Sbjct: 113 MELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLIS 172
Query: 61 GYCQTGDFESVIRIFREM--EEIDLFSFGIV--LRACAGLA---ALRLGKEVHCQYIRRS 113
C +E + FR M E ++ SF +V + AC+ L L +GK+VH +R+
Sbjct: 173 SLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG 232
Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
II + LV +Y K G + + + R+L+TWN+++S QN + EAL
Sbjct: 233 ELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLR 291
Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
+M G +PD + VL ACSH+ ++ G++ A K
Sbjct: 292 EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 330
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 150/302 (49%), Gaps = 21/302 (6%)
Query: 2 LKQGKEVHAKVITLG-LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
L+ GKE+HA + G L N V S+LVDMY C V RVFD M + +A++
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377
Query: 61 GYCQTGDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115
GY Q + + +F MEE + + V+ AC A + +H ++R
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD 437
Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
+D +++ L+D+Y++ G +D A +IF +M R+L+TWN+MI+G+ + E+AL + M
Sbjct: 438 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 497
Query: 176 -------TEGGT----KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224
++G + KP+ ++ + +L +C+ + + +G++ A K + + +
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGS 556
Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM--ELK 282
+VD+ + G L+ + + + + + W V++ A N A + + +M +K
Sbjct: 557 ALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVK 615
Query: 283 PD 284
P+
Sbjct: 616 PN 617
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 9/209 (4%)
Query: 82 DLFSFGIVLRACAGLAALRLGKEVHCQ-YIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140
D ++F +L+A A L + LGK++H Y G V + + LV+LY KCG +++
Sbjct: 96 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155
Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
F ++ RN ++WNS+IS + E AL F M + +P + + V++ACS++ +
Sbjct: 156 FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMP 215
Query: 201 D---RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV 257
+ G++ A ++ + I N +V + G+ G L ++ L+ + R D W
Sbjct: 216 EGLMMGKQVHAYGLRKGELNSFI--INTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNT 272
Query: 258 LLGA-CTTFRNAHVAERVAKKIME-LKPD 284
+L + C + E + + ++E ++PD
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPD 301
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 15/154 (9%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L +GKE+HA I L +V V S+LVDMY KCG + S +VFD++ +KN ++ + ++
Sbjct: 533 LAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMA 592
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y G+ + I + R M + + +F V AC+ + G + Y+ + D
Sbjct: 593 YGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF--YVMK---PD 647
Query: 118 VIIESA------LVDLYAKCGCVDFAHQIFLQMP 145
+E + +VDL + G + A+Q+ MP
Sbjct: 648 YGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMP 681
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 241 bits (616), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 195/333 (58%), Gaps = 4/333 (1%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G+ +H + + GL V V +S + MY KCG V+ R+FD+M K ++ +A++ GY Q
Sbjct: 175 GRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQ 234
Query: 65 TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
G V+ ++ +M+ D F+ VL +CA L A ++G EV +V +
Sbjct: 235 NGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFV 294
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
+A + +YA+CG + A +F MPV++L++W +MI + +G GE L +FDDM + G
Sbjct: 295 SNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGI 354
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
+PD F+ VLSACSH GL D+G + F +M +EY+++P EHY+C+VDLLGRAG L+EA
Sbjct: 355 RPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAM 414
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
IE+ D ++W LLGAC +N +AE K++E +P+ YVL+ N+Y
Sbjct: 415 EFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSK 474
Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
++IR +M+ +K PG S++E +++
Sbjct: 475 NQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVH 507
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 135/263 (51%), Gaps = 8/263 (3%)
Query: 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN--SVSSSALLQG 61
G+++H V G V ++L+ MY KCGLV ++ +VF++ + + SV +AL+ G
Sbjct: 71 SGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISG 130
Query: 62 YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y +FR M+E +D + ++ C L LG+ +H Q ++ +
Sbjct: 131 YTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSE 190
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
V + ++ + +Y KCG V+ ++F +MPV+ LITWN++ISG++QNG + L +++ M
Sbjct: 191 VAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKS 250
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G PD + + VLS+C+H+G G + + + P + N + + R G L
Sbjct: 251 SGVCPDPFTLVSVLSSCAHLGAKKIGHE-VGKLVESNGFVPNVFVSNASISMYARCGNLA 309
Query: 238 EAETLIENADCRHDSSLWEVLLG 260
+A + + + S W ++G
Sbjct: 310 KARAVFDIMPVKSLVS-WTAMIG 331
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 77/135 (57%), Gaps = 8/135 (5%)
Query: 68 FESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIES 122
F I ++R M D FSF +L++CA L+ G+++HC ++ + GC+ + + +
Sbjct: 34 FSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHC-HVTKGGCETEPFVLT 92
Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLIT--WNSMISGFAQNGRGEEALRIFDDMTEGGT 180
AL+ +Y KCG V A ++F + P + ++ +N++ISG+ N + +A +F M E G
Sbjct: 93 ALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGV 152
Query: 181 KPDHVSFIGVLSACS 195
D V+ +G++ C+
Sbjct: 153 SVDSVTMLGLVPLCT 167
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGY 62
K G EV V + G NV V ++ + MY +CG + ++ VFD M K+ VS +A++ Y
Sbjct: 274 KIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCY 333
Query: 63 CQTGDFESVIRIFREMEE----IDLFSFGIVLRAC--AGLA--ALRLGKEVHCQYIRRSG 114
G E + +F +M + D F +VL AC +GL L L + + +Y G
Sbjct: 334 GMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPG 393
Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMI 156
+ S LVDL + G +D A + MPV + W +++
Sbjct: 394 PEHY---SCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALL 433
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210
WN + A E++ ++ M G+ PD SF +L +C+ + L G++ +
Sbjct: 20 PWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 79
Query: 211 TK-EYRIKPKIEHYNCMVDLLGRAGLLEEAETLI-ENADCRHDSSLWEVLLGACTT 264
TK +P + ++ + + GL+ +A + EN S + L+ T
Sbjct: 80 TKGGCETEPFV--LTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTA 133
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 212/336 (63%), Gaps = 8/336 (2%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
++ G++VH + G N+ + ++L+D+Y KCG ++ + +F+++ K+ +S + L+ G
Sbjct: 282 IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGG 341
Query: 62 YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYI--RRSGC 115
Y ++ + +F+EM E + + +L ACA L A+ +G+ +H YI R G
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV-YIDKRLKGV 400
Query: 116 KDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174
+ + ++L+D+YAKCG ++ AHQ+F + ++L +WN+MI GFA +GR + + +F
Sbjct: 401 TNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSR 460
Query: 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234
M + G +PD ++F+G+LSACSH G++D GR F +MT++Y++ PK+EHY CM+DLLG +G
Sbjct: 461 MRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSG 520
Query: 235 LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294
L +EAE +I + D +W LL AC N + E A+ +++++P+ SYVLL N
Sbjct: 521 LFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSN 580
Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330
+Y + GRWN+ K R L+ G+KK+PG S IE +S
Sbjct: 581 IYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDS 616
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 148/294 (50%), Gaps = 37/294 (12%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
K+G+++H V+ LG ++ V +SL+ MY + G ++++H+VFDK ++ VS +AL++G
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKG 209
Query: 62 YCQTGDFESVIRIFREMEEIDLFSFG---------------------------------- 87
Y G E+ ++F E+ D+ S+
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269
Query: 88 -IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
V+ ACA ++ LG++VH ++ I +AL+DLY+KCG ++ A +F ++P
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329
Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
+++I+WN++I G+ +EAL +F +M G P+ V+ + +L AC+H+G ID GR
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 389
Query: 207 FASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
+ K + + ++D+ + G +E A + N+ S W ++
Sbjct: 390 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVF-NSILHKSLSSWNAMI 442
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 148/304 (48%), Gaps = 48/304 (15%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL------VDESHRVFDKMLKKNSVSS 55
L+ + +HA++I +GL S L++ C L + + VF + + N +
Sbjct: 46 LQSLRIIHAQMIKIGLHNTNYALSKLIEF---CILSPHFEGLPYAISVFKTIQEPNLLIW 102
Query: 56 SALLQGYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIR 111
+ + +G+ + D S ++++ M + L ++F VL++CA A + G+++H ++
Sbjct: 103 NTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLK 162
Query: 112 -------------------------------RSGCKDVIIESALVDLYAKCGCVDFAHQI 140
+S +DV+ +AL+ YA G ++ A ++
Sbjct: 163 LGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKL 222
Query: 141 FLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200
F ++PV+++++WN+MISG+A+ G +EAL +F DM + +PD + + V+SAC+ G I
Sbjct: 223 FDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSI 282
Query: 201 DRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
+ GR+ H ++ ++ N ++DL + G LE A L E + D W L+
Sbjct: 283 ELGRQVHL--WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISWNTLI 339
Query: 260 GACT 263
G T
Sbjct: 340 GGYT 343
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 120/274 (43%), Gaps = 45/274 (16%)
Query: 16 GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF 75
G+ + +SL+DMY KCG ++ +H+VF+ +L K+ S +A++ G+ G ++ +F
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 76 REMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL------V 125
M +I D +F +L AC+ L LG+ +I R+ +D + L +
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGR-----HIFRTMTQDYKMTPKLEHYGCMI 513
Query: 126 DLYAKCGCVDFAHQIFLQMPV-RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184
DL G A ++ M + + + W S++ +G E +++ + +P++
Sbjct: 514 DLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIK--IEPEN 571
Query: 185 VSFIGVLS------------ACSHMGLIDRGRKHFA--------SMTKEYRIKPKIEHYN 224
+LS A + L D+G K S+ E+ I K N
Sbjct: 572 PGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 631
Query: 225 CMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258
+ G+LEE E L+E A D+S EVL
Sbjct: 632 REI-----YGMLEEMEVLLEKAGFVPDTS--EVL 658
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 240 bits (613), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 127/366 (34%), Positives = 211/366 (57%), Gaps = 39/366 (10%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-------------- 50
G+++H +V+ G +V V + L+ MY CG + ++ ++FD+ML K
Sbjct: 135 GRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGK 194
Query: 51 -------------------NSVSSSALLQGYCQTGDFESVIRIFREM----EEIDLFSFG 87
N VS + ++ GY ++G I +F+ M E D +
Sbjct: 195 VGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLL 254
Query: 88 IVLRACAGLAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146
VL ACA L +L LG+ + C Y+ G + V + +A++D+YAK G + A +F +
Sbjct: 255 AVLSACADLGSLELGERI-CSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNE 313
Query: 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206
RN++TW ++I+G A +G G EAL +F+ M + G +P+ V+FI +LSACSH+G +D G++
Sbjct: 314 RNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRL 373
Query: 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR 266
F SM +Y I P IEHY CM+DLLGRAG L EA+ +I++ + ++++W LL A
Sbjct: 374 FNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHH 433
Query: 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
+ + ER ++++L+P+ +Y+LL N+Y +GRW+++ +R +MK GVKKM G+S I
Sbjct: 434 DLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSI 493
Query: 327 EANSKL 332
E +++
Sbjct: 494 EVENRV 499
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 138/314 (43%), Gaps = 44/314 (14%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
LK K+ H +I GL + + + ++ G + ++ VF N+ + +++
Sbjct: 28 LKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRA 87
Query: 62 YC---QTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
+ I ++R++ + D F+F VL+ ++ + G+++H Q +
Sbjct: 88 LSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGF 147
Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMI------------------ 156
V + + L+ +Y CG + A ++F +M V+++ WN+++
Sbjct: 148 DSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEM 207
Query: 157 ---------------SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
SG+A++GR EA+ +F M +PD V+ + VLSAC+ +G ++
Sbjct: 208 MPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLE 267
Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGA 261
G + S + + N ++D+ ++G + +A + E + R+ + W ++
Sbjct: 268 LGER-ICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVT-WTTIIAG 325
Query: 262 CTTFRNAHVAERVA 275
T + H AE +A
Sbjct: 326 LAT--HGHGAEALA 337
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ G+ + + V G+ V + ++++DMY K G + ++ VF+ + ++N V+ + ++ G
Sbjct: 266 LELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAG 325
Query: 62 YCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
G + +F M + + +F +L AC+ + + LGK + + G
Sbjct: 326 LATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHP 385
Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
I ++DL + G + A ++ MP + N W S+++
Sbjct: 386 NIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAA 428
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 193/315 (61%), Gaps = 6/315 (1%)
Query: 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
+V+ +S+V Y + G + + FD+M ++ +S + ++ GY + G F + IFREM+
Sbjct: 301 DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQ 360
Query: 80 EI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
D F+ VL ACA L +L +G+ + YI ++ K DV++ +AL+D+Y KCGC
Sbjct: 361 SAGMIPDEFTMVSVLTACAHLGSLEIGEWIK-TYIDKNKIKNDVVVGNALIDMYFKCGCS 419
Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
+ A ++F M R+ TW +M+ G A NG+G+EA+++F M + +PD ++++GVLSAC
Sbjct: 420 EKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSAC 479
Query: 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254
+H G++D+ RK FA M ++RI+P + HY CMVD+LGRAGL++EA ++ +S +
Sbjct: 480 NHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIV 539
Query: 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314
W LLGA + +AE AKKI+EL+PD Y LL N+Y RW D ++R +
Sbjct: 540 WGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVD 599
Query: 315 SGVKKMPGKSWIEAN 329
+KK PG S IE N
Sbjct: 600 VAIKKTPGFSLIEVN 614
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 160/321 (49%), Gaps = 47/321 (14%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
GK++H V+ GL N+ V+++LV MY CGL+D + VFD+ K++ S + ++ GY +
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213
Query: 65 TGDFESVIRIFREMEEIDLFS-----FGIVLRACAGLAALRLGKEVHCQYIRRSGCK--- 116
++E I + EME +L S +VL AC+ + L K VH +Y+ S CK
Sbjct: 214 MKEYEESIELLVEMER-NLVSPTSVTLLLVLSACSKVKDKDLCKRVH-EYV--SECKTEP 269
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFL-------------------------------QMP 145
+ +E+ALV+ YA CG +D A +IF QMP
Sbjct: 270 SLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMP 329
Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
VR+ I+W MI G+ + G E+L IF +M G PD + + VL+AC+H+G ++ G +
Sbjct: 330 VRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG-E 388
Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF 265
+ + +IK + N ++D+ + G E+A+ + + D R D W ++
Sbjct: 389 WIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQR-DKFTWTAMVVGLANN 447
Query: 266 RNAHVAERVAKKI--MELKPD 284
A +V ++ M ++PD
Sbjct: 448 GQGQEAIKVFFQMQDMSIQPD 468
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 154/333 (46%), Gaps = 36/333 (10%)
Query: 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGK--CGLVDESHRVFDKMLKKNSVSSSALLQG 61
Q K++H++ IT G+ N + L + G V ++++F K+ + + V + +++G
Sbjct: 49 QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKG 108
Query: 62 YCQTG-DFESV---IRIFREMEEIDLFSFGIVLRACAGL----AALRLGKEVHCQYIRRS 113
+ + D E V + + +E D +F +L GL AL GK++HC ++
Sbjct: 109 WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN---GLKRDGGALACGKKLHCHVVKFG 165
Query: 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFD 173
++ +++ALV +Y+ CG +D A +F + ++ +WN MISG+ + EE++ +
Sbjct: 166 LGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLV 225
Query: 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233
+M P V+ + VLSACS + D K E + +P + N +V+
Sbjct: 226 EMERNLVSPTSVTLLLVLSACSKVKDKDLC-KRVHEYVSECKTEPSLRLENALVNAYAAC 284
Query: 234 GLLEEAETLIENADCRHDSSLWEVLLG---------ACTTFRNAHVAERVAKKIMELKPD 284
G ++ A + + R S ++ G A T F V +R++ IM
Sbjct: 285 GEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIM----- 339
Query: 285 CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317
+D RA G +N++ +I M+ +G+
Sbjct: 340 -------IDGYLRA-GCFNESLEIFREMQSAGM 364
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2
SV=1
Length = 895
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 199/330 (60%), Gaps = 6/330 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L +GKE+H + G+ + + S+LV+MY KCG + + +V+D++ + + VS S+L+ G
Sbjct: 567 LPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISG 626
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CK 116
Y Q G + +FR+M +D F+ +L+A A LG +VH YI + G C
Sbjct: 627 YSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHA-YITKIGLCT 685
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
+ + S+L+ +Y+K G +D + F Q+ +LI W ++I+ +AQ+G+ EAL++++ M
Sbjct: 686 EPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMK 745
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
E G KPD V+F+GVLSACSH GL++ H SM K+Y I+P+ HY CMVD LGR+G L
Sbjct: 746 EKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRL 805
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
EAE+ I N + D+ +W LL AC + + AKK +EL+P +Y+ L N+
Sbjct: 806 REAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNIL 865
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
VG W++ + R LMK +GV+K PG S +
Sbjct: 866 AEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 145/274 (52%), Gaps = 8/274 (2%)
Query: 12 VITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESV 71
I +G VVES+L+D++ K +++++VF L N + ++ G + ++ +V
Sbjct: 176 TIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAV 235
Query: 72 IRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127
+F EM ++ D +++ VL ACA L LR GK V + I+ G +DV + +A+VDL
Sbjct: 236 FDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIK-CGAEDVFVCTAIVDL 294
Query: 128 YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187
YAKCG + A ++F ++P ++++W M+SG+ ++ AL IF +M G + ++ +
Sbjct: 295 YAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTV 354
Query: 188 IGVLSACSHMGLI-DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246
V+SAC ++ + + H + + + ++ + ++G ++ +E + E+
Sbjct: 355 TSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAA--ALISMYSKSGDIDLSEQVFEDL 412
Query: 247 DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280
D ++ V++ + + + A R+ ++++
Sbjct: 413 DDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQ 446
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 148/322 (45%), Gaps = 40/322 (12%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L GK+VH + GL ++ V SSL +Y KCG ++ES+++F + K++ ++++ G
Sbjct: 466 LNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISG 525
Query: 62 YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
+ + G I +F EM D + VL C+ +L GKE+H +R K
Sbjct: 526 FNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKG 585
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ + SALV++Y+KCG + A Q++ ++P + ++ +S+ISG++Q+G ++ +F DM
Sbjct: 586 MDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVM 645
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G D + +L A A+++ E + ++ Y + + GL
Sbjct: 646 SGFTMDSFAISSILKA--------------AALSDESSLGAQVHAY------ITKIGLCT 685
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
E SSL T + + K ++ +++ L Y
Sbjct: 686 EPSV---------GSSL-------LTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYA 729
Query: 298 AVGRWNDAFKIRTLMKYSGVKK 319
G+ N+A ++ LMK G K
Sbjct: 730 QHGKANEALQVYNLMKEKGFKP 751
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 13/248 (5%)
Query: 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVF---DKMLKKNSVSSSALLQ 60
+ +VHA V G + V ++L+ MY K G +D S +VF D + ++N V+ ++
Sbjct: 369 EASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVN--VMIT 426
Query: 61 GYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
+ Q+ IR+F M + D FS +L L L LGK+VH ++
Sbjct: 427 SFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSV---LDCLNLGKQVHGYTLKSGLVL 483
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
D+ + S+L LY+KCG ++ ++++F +P ++ W SMISGF + G EA+ +F +M
Sbjct: 484 DLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEML 543
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
+ GT PD + VL+ CS + RG K T I ++ + +V++ + G L
Sbjct: 544 DDGTSPDESTLAAVLTVCSSHPSLPRG-KEIHGYTLRAGIDKGMDLGSALVNMYSKCGSL 602
Query: 237 EEAETLIE 244
+ A + +
Sbjct: 603 KLARQVYD 610
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 126/266 (47%), Gaps = 13/266 (4%)
Query: 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79
+V + SL+ Y G + ++ ++FD + + + VS + ++ GY Q FE +R F +M
Sbjct: 83 DVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMH 142
Query: 80 ----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135
E + S+G V+ AC+ L A + V C I+ ++ESAL+D+++K +
Sbjct: 143 FLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFE 202
Query: 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195
A+++F N+ WN++I+G +N +F +M G KPD ++ VL+AC+
Sbjct: 203 DAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACA 262
Query: 196 HMGLIDRGRKHFASMTKEYRIKPKIEHY---NCMVDLLGRAGLLEEAETLIENADCRHDS 252
+ + F + + IK E +VDL + G + EA +
Sbjct: 263 SL-----EKLRFGKVVQARVIKCGAEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVV 317
Query: 253 SLWEVLLGACTTFRNAHVAERVAKKI 278
S W V+L T +A A + K++
Sbjct: 318 S-WTVMLSGYTKSNDAFSALEIFKEM 342
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 198/336 (58%), Gaps = 8/336 (2%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ G+ + IT + + + S L+ MYGKCG +D + RVF++M+KK+ V+ +A++
Sbjct: 249 LRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITV 308
Query: 62 YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q G ++F EME+ D + VL AC + AL LGK++ S +
Sbjct: 309 YSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHN 368
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ + + LVD+Y KCG V+ A ++F MPV+N TWN+MI+ +A G +EAL +FD M+
Sbjct: 369 IYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMS- 427
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
P ++FIGVLSAC H GL+ +G ++F M+ + + PKIEHY ++DLL RAG+L+
Sbjct: 428 --VPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLD 485
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL-SYVLLDNVY 296
EA +E + D + +LGAC ++ + E+ + +ME+K + +YV+ NV
Sbjct: 486 EAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVL 545
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332
+ W+++ K+R LM+ GV K PG SWIE +L
Sbjct: 546 ADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEGEL 581
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 147/261 (56%), Gaps = 6/261 (2%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G+ VH+ + +GL +V + SL+ MY KCG V + ++FD++ ++++VS ++++ GY +
Sbjct: 151 GRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSE 210
Query: 65 TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
G + + +FR+MEE D + +L AC+ L LR G+ + I + +
Sbjct: 211 AGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFL 270
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
S L+ +Y KCG +D A ++F QM ++ + W +MI+ ++QNG+ EA ++F +M + G
Sbjct: 271 GSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGV 330
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
PD + VLSAC +G ++ G K + E ++ I +VD+ G+ G +EEA
Sbjct: 331 SPDAGTLSTVLSACGSVGALELG-KQIETHASELSLQHNIYVATGLVDMYGKCGRVEEAL 389
Query: 241 TLIENADCRHDSSLWEVLLGA 261
+ E +++++ W ++ A
Sbjct: 390 RVFEAMPVKNEAT-WNAMITA 409
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 124/236 (52%), Gaps = 15/236 (6%)
Query: 33 KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQT-GDFESVIRIFREME----EIDLFSFG 87
+ G + S +F + N S + +++G T D E+ + ++R M+ + D F++
Sbjct: 77 ELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYN 136
Query: 88 IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR 147
V ACA L + +G+ VH + +DV I +L+ +YAKCG V +A ++F ++ R
Sbjct: 137 FVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITER 196
Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207
+ ++WNSMISG+++ G ++A+ +F M E G +PD + + +L ACSH+G + GR
Sbjct: 197 DTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGR--- 253
Query: 208 ASMTKEYRIKPKIEHYNC----MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
+ +E I KI ++ + G+ G L+ A + N + D W ++
Sbjct: 254 --LLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVF-NQMIKKDRVAWTAMI 306
>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680
OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710
Score = 238 bits (608), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/324 (36%), Positives = 190/324 (58%), Gaps = 4/324 (1%)
Query: 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
+VH++++ G V +L++MYGKCG V + RVFD +N ++ ++ Y Q
Sbjct: 258 QVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDK 317
Query: 67 DFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES 122
FE + +F +M+ ++ ++F I+L + A L+ L+ G +H ++ V++ +
Sbjct: 318 SFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGN 377
Query: 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
ALV++YAK G ++ A + F M R+++TWN+MISG + +G G EAL FD M G P
Sbjct: 378 ALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIP 437
Query: 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242
+ ++FIGVL ACSH+G +++G +F + K++ ++P I+HY C+V LL +AG+ ++AE
Sbjct: 438 NRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDF 497
Query: 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302
+ A D W LL AC RN + ++VA+ +E P+ YVLL N++ W
Sbjct: 498 MRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREW 557
Query: 303 NDAFKIRTLMKYSGVKKMPGKSWI 326
K+R+LM GVKK PG SWI
Sbjct: 558 EGVAKVRSLMNNRGVKKEPGVSWI 581
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 126/268 (47%), Gaps = 8/268 (2%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
R+++GK+ H + GL + V ++LV MY C E+ RV D + + S+ L
Sbjct: 151 RIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALS 210
Query: 61 GYCQTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
GY + G F+ + + R+ D ++ LR + L L L +VH + +R
Sbjct: 211 GYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNA 270
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
+V AL+++Y KCG V +A ++F +N+ +++ + Q+ EEAL +F M
Sbjct: 271 EVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMD 330
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGR-KHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
P+ +F +L++ + + L+ +G H + YR + N +V++ ++G
Sbjct: 331 TKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVG--NALVNMYAKSGS 388
Query: 236 LEEAETLIENADCRHDSSLWEVLLGACT 263
+E+A R D W ++ C+
Sbjct: 389 IEDARKAFSGMTFR-DIVTWNTMISGCS 415
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 89 VLRACAGLAALRLGKEVHCQYI---RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
+L+ CA + LR+G+ +H I + S +D ++L++LY KC A ++F MP
Sbjct: 37 LLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMP 96
Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDM-TEGGTKPDHVSFIGVLSACSHMGLIDRGR 204
RN+++W +M+ G+ +G E L++F M G ++P+ V +CS+ G I+ G+
Sbjct: 97 ERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGK 156
Query: 205 K 205
+
Sbjct: 157 Q 157
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/312 (19%), Positives = 149/312 (47%), Gaps = 28/312 (8%)
Query: 2 LKQGKEVHAKVITLGLCG---NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSAL 58
L+ G+ +HA +I + +SL+++Y KC + ++FD M ++N VS A+
Sbjct: 47 LRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMPERNVVSWCAM 106
Query: 59 LQGYCQTG-DFESVIRIFREM-----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112
++GY +G DFE V+++F+ M + F +V ++C+ + GK+ H +++
Sbjct: 107 MKGYQNSGFDFE-VLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKY 165
Query: 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF 172
+ + LV +Y+ C A ++ +P +L ++S +SG+ + G +E L +
Sbjct: 166 GLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDVL 225
Query: 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232
++++++ L S++ ++ + + M + + ++E ++++ G+
Sbjct: 226 RKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVR-FGFNAEVEACGALINMYGK 284
Query: 233 AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM---------ELKP 283
G + A+ + + D+ + L TT +A+ ++ ++ + E+ P
Sbjct: 285 CGKVLYAQRVFD------DTHAQNIFLN--TTIMDAYFQDKSFEEALNLFSKMDTKEVPP 336
Query: 284 DCHLSYVLLDNV 295
+ + +LL+++
Sbjct: 337 NEYTFAILLNSI 348
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
LKQG +H V+ G +V+V ++LV+MY K G ++++ + F M ++ V+ + ++ G
Sbjct: 354 LKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISG 413
Query: 62 YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK- 116
G + F M E + +F VL+AC+ + + G Q +++ +
Sbjct: 414 CSHHGLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQP 473
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISG 158
D+ + +V L +K G A P+ +++ W ++++
Sbjct: 474 DIQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRTLLNA 516
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 238 bits (608), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 195/337 (57%), Gaps = 5/337 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L +GK VH + L ++ V ++L+DMY KCG + E+ VF +M K+ +S + ++ G
Sbjct: 413 LDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGG 472
Query: 62 YCQTGDFESVIRIFREMEEIDLFS-----FGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
Y + + +F + E FS VL ACA L+A G+E+H +R
Sbjct: 473 YSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS 532
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
D + ++LVD+YAKCG + AH +F + ++L++W MI+G+ +G G+EA+ +F+ M
Sbjct: 533 DRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMR 592
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
+ G + D +SF+ +L ACSH GL+D G + F M E +I+P +EHY C+VD+L R G L
Sbjct: 593 QAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDL 652
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
+A IEN D+++W LL C + +AE+VA+K+ EL+P+ YVL+ N+Y
Sbjct: 653 IKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIY 712
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
+W ++R + G++K PG SWIE ++N
Sbjct: 713 AEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVN 749
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 139/261 (53%), Gaps = 6/261 (2%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G+++H ++ G V +SLV Y K VD + +VFD+M +++ +S ++++ GY
Sbjct: 214 GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273
Query: 65 TGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
G E + +F +M EIDL + V CA + LG+ VH ++ ++
Sbjct: 274 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF 333
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
+ L+D+Y+KCG +D A +F +M R+++++ SMI+G+A+ G EA+++F++M E G
Sbjct: 334 CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
PD + VL+ C+ L+D G K KE + I N ++D+ + G ++EAE
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEG-KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452
Query: 241 TLIENADCRHDSSLWEVLLGA 261
+ + D W ++G
Sbjct: 453 LVFSEMRVK-DIISWNTIIGG 472
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 137/269 (50%), Gaps = 17/269 (6%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
LK GKEV + G + + S L MY CG + E+ RVFD++ + ++ + L+
Sbjct: 110 LKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNE 169
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
++GDF I +F++M E+D ++F V ++ + L ++ G+++H +I +SG +
Sbjct: 170 LAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLH-GFILKSGFGE 228
Query: 118 V-IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
+ ++LV Y K VD A ++F +M R++I+WNS+I+G+ NG E+ L +F M
Sbjct: 229 RNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQML 288
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHF-----ASMTKEYRIKPKIEHYNCMVDLLG 231
G + D + + V + C+ LI GR A ++E R N ++D+
Sbjct: 289 VSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF------CNTLLDMYS 342
Query: 232 RAGLLEEAETLIENADCRHDSSLWEVLLG 260
+ G L+ A+ + R S ++ G
Sbjct: 343 KCGDLDSAKAVFREMSDRSVVSYTSMIAG 371
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 48 LKKNSVSSSALLQGYCQTGDFESVIRIF--REMEEIDLFSFGIVLRACAGLAALRLGKEV 105
++ ++ L+ +C++G+ E+ +++ +ID + VL+ CA +L+ GKEV
Sbjct: 57 FDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEV 116
Query: 106 HCQYIRRSG-CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164
+IR +G D + S L +Y CG + A ++F ++ + + WN +++ A++G
Sbjct: 117 D-NFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175
Query: 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
++ +F M G + D +F V + S + + G +
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQ 216
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 204/364 (56%), Gaps = 35/364 (9%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G++ H++++ G +V VE+SLV MY CG + + R+F +M ++ VS ++++ GYC+
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCK 195
Query: 65 TGDFESVIRIFREMEEIDLFSFGI-----------------------------------V 89
G E+ +F EM +LF++ I V
Sbjct: 196 CGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSV 255
Query: 90 LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149
+ +CA L AL G+ + ++ ++I+ +ALVD++ +CG ++ A +F +P +
Sbjct: 256 ISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDS 315
Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209
++W+S+I G A +G +A+ F M G P V+F VLSACSH GL+++G + + +
Sbjct: 316 LSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYEN 375
Query: 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAH 269
M K++ I+P++EHY C+VD+LGRAG L EAE I + ++ + LLGAC ++N
Sbjct: 376 MKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTE 435
Query: 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
VAERV ++++KP+ YVLL N+Y G+W+ +R +MK VKK PG S IE +
Sbjct: 436 VAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEID 495
Query: 330 SKLN 333
K+N
Sbjct: 496 GKIN 499
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 141/318 (44%), Gaps = 44/318 (13%)
Query: 6 KEVHAKVITLGLCGNVVVESSLVDM------YGK-CGLVDESHRVFDKMLKKNSVSSSAL 58
K +H ++ L +V V S L+ + + K L+ ++ +F ++ N + L
Sbjct: 29 KIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLL 88
Query: 59 LQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114
++ + + + +M + D +F +++A + + + +G++ H Q +R
Sbjct: 89 IRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGF 148
Query: 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS-------------------- 154
DV +E++LV +YA CG + A +IF QM R++++W S
Sbjct: 149 QNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDE 208
Query: 155 -----------MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRG 203
MI+G+A+N E+A+ +F+ M G + + V+S+C+H+G ++ G
Sbjct: 209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFG 268
Query: 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263
+ + + K + I +VD+ R G +E+A + E DS W ++
Sbjct: 269 ERAYEYVVKSHMTVNLILG-TALVDMFWRCGDIEKAIHVFEGLP-ETDSLSWSSIIKGLA 326
Query: 264 TFRNAHVAERVAKKIMEL 281
+AH A +++ L
Sbjct: 327 VHGHAHKAMHYFSQMISL 344
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 95/197 (48%), Gaps = 8/197 (4%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ G+ + V+ + N+++ ++LVDM+ +CG ++++ VF+ + + +S+S S++++G
Sbjct: 265 LEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKG 324
Query: 62 YCQTGDFESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
G + F +M + +F VL AC+ + G E++ + G +
Sbjct: 325 LAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEP 384
Query: 118 VIIESA-LVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDM 175
+ +VD+ + G + A L+M V+ N +++ E A R+ + +
Sbjct: 385 RLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNML 444
Query: 176 TEGGTKPDHVSFIGVLS 192
+ KP+H + +LS
Sbjct: 445 IK--VKPEHSGYYVLLS 459
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 197/339 (58%), Gaps = 6/339 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L GK++H ++ ++ V SSL+DMY K G + E+ +F+ + +++ VS +A++ G
Sbjct: 169 LGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAG 228
Query: 62 YCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q G E + +F + + ++ +L A +GLA L GK+ HC +RR
Sbjct: 229 YAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFY 288
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM-T 176
+++++L+D+Y+KCG + +A ++F MP R I+WN+M+ G++++G G E L +F M
Sbjct: 289 AVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRD 348
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK-EYRIKPKIEHYNCMVDLLGRAGL 235
E KPD V+ + VLS CSH + D G F M EY KP EHY C+VD+LGRAG
Sbjct: 349 EKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGR 408
Query: 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295
++EA I+ + + + LLGAC + + E V ++++E++P+ +YV+L N+
Sbjct: 409 IDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNL 468
Query: 296 YRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNH 334
Y + GRW D +R +M V K PG+SWI+ L++
Sbjct: 469 YASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHY 507
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 155/290 (53%), Gaps = 9/290 (3%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ G+ VHA +I + + L+ YGKC ++++ +V D+M +KN VS +A++
Sbjct: 68 LRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISR 127
Query: 62 YCQTGDFESVIRIFREMEEID----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y QTG + +F EM D F+F VL +C + L LGK++H ++ +
Sbjct: 128 YSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSH 187
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ + S+L+D+YAK G + A +IF +P R++++ ++I+G+AQ G EEAL +F +
Sbjct: 188 IFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHS 247
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
G P++V++ +L+A S + L+D G++ H + +E ++ N ++D+ + G L
Sbjct: 248 EGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQ--NSLIDMYSKCGNL 305
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE--RVAKKIMELKPD 284
A L +N R S +L+G V E R+ + +KPD
Sbjct: 306 SYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 355
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 2/205 (0%)
Query: 41 HRVFDKMLKKNSVSSSALLQGYCQTGDF-ESVIRIFREMEEIDLFSFGIVLRACAGLAAL 99
HR F + + + C G E+++ + E+ + +L AC AL
Sbjct: 9 HRSFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRAL 68
Query: 100 RLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF 159
R G+ VH I+ + + L+ Y KC C++ A ++ +MP +N+++W +MIS +
Sbjct: 69 RDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRY 128
Query: 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219
+Q G EAL +F +M KP+ +F VL++C + G K + ++
Sbjct: 129 SQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLG-KQIHGLIVKWNYDSH 187
Query: 220 IEHYNCMVDLLGRAGLLEEAETLIE 244
I + ++D+ +AG ++EA + E
Sbjct: 188 IFVGSSLLDMYAKAGQIKEAREIFE 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,195,210
Number of Sequences: 539616
Number of extensions: 5025235
Number of successful extensions: 16061
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 10810
Number of HSP's gapped (non-prelim): 2020
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)