Query 037592
Match_columns 337
No_of_seqs 480 out of 1394
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 02:31:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.4E-57 3E-62 414.9 36.7 327 7-333 245-575 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.4E-54 3E-59 403.9 38.1 332 2-334 405-739 (857)
3 PLN03218 maturation of RBCL 1; 100.0 4E-53 8.7E-58 389.5 38.5 322 1-324 452-792 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1E-51 2.2E-56 380.2 36.5 326 1-328 385-761 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 8.7E-52 1.9E-56 376.9 35.4 319 2-323 139-464 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.6E-49 3.5E-54 370.0 35.9 317 2-323 304-627 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-24 4E-29 205.0 36.5 311 1-318 548-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 3.6E-24 7.8E-29 203.0 37.6 306 2-314 515-831 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.8E-24 3.9E-29 185.8 30.5 290 27-322 41-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 4.2E-23 9.1E-28 177.3 30.5 276 1-280 50-346 (389)
11 PRK15174 Vi polysaccharide exp 99.9 7.7E-21 1.7E-25 171.5 36.8 312 1-318 57-384 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-20 4E-25 169.4 35.8 310 1-316 142-572 (615)
13 KOG4626 O-linked N-acetylgluco 99.9 6E-22 1.3E-26 165.8 22.6 309 2-316 132-486 (966)
14 PRK15174 Vi polysaccharide exp 99.9 3.1E-20 6.8E-25 167.6 34.8 309 1-325 91-413 (656)
15 KOG4626 O-linked N-acetylgluco 99.9 1.1E-21 2.3E-26 164.4 21.6 304 18-329 113-429 (966)
16 PRK11447 cellulose synthase su 99.9 2.5E-19 5.5E-24 172.1 35.5 207 1-211 284-522 (1157)
17 TIGR00990 3a0801s09 mitochondr 99.9 2.5E-18 5.4E-23 155.6 34.7 291 23-317 129-498 (615)
18 PRK11447 cellulose synthase su 99.9 2.6E-18 5.7E-23 165.2 34.7 304 1-314 366-739 (1157)
19 PRK10049 pgaA outer membrane p 99.8 4.3E-17 9.2E-22 150.4 37.5 311 1-314 30-421 (765)
20 PRK10049 pgaA outer membrane p 99.8 8.5E-17 1.8E-21 148.4 37.4 315 1-317 64-458 (765)
21 PRK09782 bacteriophage N4 rece 99.8 1E-15 2.3E-20 142.0 36.6 305 3-316 359-707 (987)
22 PF13429 TPR_15: Tetratricopep 99.8 5.4E-19 1.2E-23 144.5 12.6 252 59-314 15-276 (280)
23 KOG2076 RNA polymerase III tra 99.8 1.1E-15 2.3E-20 133.8 30.0 322 1-325 154-522 (895)
24 PRK09782 bacteriophage N4 rece 99.8 1.8E-15 3.8E-20 140.6 33.2 310 2-318 392-743 (987)
25 PRK14574 hmsH outer membrane p 99.8 2.1E-14 4.5E-19 131.0 35.6 158 157-314 300-478 (822)
26 PRK10747 putative protoheme IX 99.8 4.1E-15 8.9E-20 127.1 28.9 274 33-314 96-389 (398)
27 PRK10747 putative protoheme IX 99.7 3.1E-14 6.8E-19 121.7 31.9 273 1-281 99-390 (398)
28 COG2956 Predicted N-acetylgluc 99.7 7.4E-15 1.6E-19 114.5 24.9 286 32-322 46-354 (389)
29 KOG1126 DNA-binding cell divis 99.7 9.6E-16 2.1E-20 130.1 21.2 274 35-318 333-623 (638)
30 KOG1126 DNA-binding cell divis 99.7 1.1E-15 2.5E-20 129.6 21.6 272 3-284 336-623 (638)
31 TIGR00540 hemY_coli hemY prote 99.7 8.5E-14 1.9E-18 119.7 31.9 278 32-314 95-398 (409)
32 TIGR00540 hemY_coli hemY prote 99.7 7.5E-14 1.6E-18 120.0 29.7 272 2-280 100-398 (409)
33 COG2956 Predicted N-acetylgluc 99.7 7.1E-14 1.5E-18 109.1 26.2 276 1-280 50-346 (389)
34 PF13429 TPR_15: Tetratricopep 99.7 1.3E-16 2.9E-21 130.4 11.8 254 19-280 7-276 (280)
35 PRK14574 hmsH outer membrane p 99.7 6.5E-13 1.4E-17 121.3 36.2 191 125-315 299-513 (822)
36 KOG0495 HAT repeat protein [RN 99.7 1.1E-12 2.5E-17 111.5 31.9 318 7-333 571-896 (913)
37 KOG1155 Anaphase-promoting com 99.7 2.4E-13 5.1E-18 111.1 25.9 294 16-314 159-494 (559)
38 COG3071 HemY Uncharacterized e 99.6 4E-12 8.7E-17 102.3 30.2 285 26-320 87-395 (400)
39 KOG1840 Kinesin light chain [C 99.6 2.9E-13 6.2E-18 115.9 24.5 230 85-314 201-478 (508)
40 KOG2003 TPR repeat-containing 99.6 2E-13 4.3E-18 111.5 22.1 269 29-301 427-709 (840)
41 KOG0547 Translocase of outer m 99.6 6.2E-13 1.3E-17 109.4 25.0 213 96-314 339-565 (606)
42 KOG1155 Anaphase-promoting com 99.6 1.7E-12 3.7E-17 106.2 27.1 228 9-245 250-491 (559)
43 KOG2002 TPR-containing nuclear 99.6 1.2E-12 2.6E-17 115.9 27.6 322 2-329 286-687 (1018)
44 COG3071 HemY Uncharacterized e 99.6 1.3E-12 2.7E-17 105.1 25.3 273 1-280 99-389 (400)
45 KOG2002 TPR-containing nuclear 99.6 4.4E-12 9.4E-17 112.5 30.4 325 3-330 253-608 (1018)
46 TIGR02521 type_IV_pilW type IV 99.6 6E-13 1.3E-17 105.9 23.5 198 117-315 30-232 (234)
47 KOG1915 Cell cycle control pro 99.6 1.6E-11 3.6E-16 100.9 30.0 317 2-323 157-508 (677)
48 KOG1173 Anaphase-promoting com 99.6 1.7E-12 3.8E-17 108.6 24.8 260 51-314 243-517 (611)
49 KOG4422 Uncharacterized conser 99.6 2.8E-11 6.1E-16 98.4 27.5 238 74-316 198-463 (625)
50 PRK12370 invasion protein regu 99.6 3.8E-12 8.2E-17 113.6 25.2 256 51-317 255-537 (553)
51 KOG0495 HAT repeat protein [RN 99.6 7.2E-11 1.6E-15 100.8 30.8 316 2-325 422-790 (913)
52 KOG2076 RNA polymerase III tra 99.5 3.1E-11 6.8E-16 106.4 28.4 295 21-317 139-480 (895)
53 TIGR02521 type_IV_pilW type IV 99.5 7.4E-12 1.6E-16 99.5 22.5 156 53-210 32-195 (234)
54 PRK12370 invasion protein regu 99.5 3.4E-12 7.4E-17 113.9 21.9 212 97-315 275-502 (553)
55 KOG1129 TPR repeat-containing 99.5 2.4E-12 5.1E-17 101.0 16.3 224 87-315 227-458 (478)
56 KOG2003 TPR repeat-containing 99.5 1.4E-10 2.9E-15 95.3 26.2 182 130-315 502-689 (840)
57 KOG1173 Anaphase-promoting com 99.5 7.5E-11 1.6E-15 99.0 25.1 273 18-293 241-530 (611)
58 KOG4422 Uncharacterized conser 99.5 2.5E-10 5.3E-15 93.1 26.7 297 17-318 203-593 (625)
59 KOG1174 Anaphase-promoting com 99.5 2.1E-10 4.5E-15 93.0 25.9 266 18-288 229-507 (564)
60 KOG1129 TPR repeat-containing 99.5 1.7E-11 3.8E-16 96.2 19.2 227 56-285 227-462 (478)
61 PRK11189 lipoprotein NlpI; Pro 99.5 2.6E-11 5.7E-16 99.5 21.2 216 62-285 36-269 (296)
62 KOG1840 Kinesin light chain [C 99.4 8.6E-11 1.9E-15 100.9 22.9 223 58-280 205-478 (508)
63 PF13041 PPR_2: PPR repeat fam 99.4 5.3E-13 1.1E-17 77.8 6.5 50 147-196 1-50 (50)
64 PRK11189 lipoprotein NlpI; Pro 99.4 2E-10 4.3E-15 94.4 23.9 211 98-317 41-267 (296)
65 KOG0547 Translocase of outer m 99.4 2.8E-10 6E-15 94.2 23.2 289 24-315 118-491 (606)
66 KOG4162 Predicted calmodulin-b 99.4 2.6E-09 5.7E-14 93.1 30.1 100 227-327 691-794 (799)
67 KOG1174 Anaphase-promoting com 99.4 8.5E-10 1.8E-14 89.5 24.8 296 18-318 191-503 (564)
68 COG3063 PilF Tfp pilus assembl 99.4 6.2E-11 1.3E-15 88.7 16.5 164 151-317 37-204 (250)
69 KOG0624 dsRNA-activated protei 99.4 2.2E-09 4.7E-14 85.2 24.9 297 20-320 37-375 (504)
70 KOG1915 Cell cycle control pro 99.4 4.7E-09 1E-13 86.8 26.9 317 2-327 89-476 (677)
71 COG3063 PilF Tfp pilus assembl 99.4 1E-09 2.3E-14 82.3 21.2 196 87-285 39-240 (250)
72 KOG4318 Bicoid mRNA stability 99.3 3.6E-10 7.8E-15 99.7 20.2 217 7-235 11-286 (1088)
73 PF12569 NARP1: NMDA receptor- 99.3 1.4E-09 3.1E-14 94.5 23.7 253 62-318 14-294 (517)
74 PF04733 Coatomer_E: Coatomer 99.3 3.6E-10 7.9E-15 91.6 18.8 250 28-285 8-269 (290)
75 KOG1125 TPR repeat-containing 99.3 2E-10 4.3E-15 96.9 17.1 222 90-314 292-526 (579)
76 PF04733 Coatomer_E: Coatomer 99.3 7.5E-11 1.6E-15 95.6 12.9 250 60-328 9-274 (290)
77 PF12569 NARP1: NMDA receptor- 99.3 1.9E-08 4.2E-13 87.6 27.9 283 28-315 11-334 (517)
78 PF13041 PPR_2: PPR repeat fam 99.3 1.7E-11 3.7E-16 71.4 6.3 50 182-232 1-50 (50)
79 cd05804 StaR_like StaR_like; a 99.2 6.6E-08 1.4E-12 82.2 29.6 297 19-316 3-337 (355)
80 KOG3785 Uncharacterized conser 99.2 2.8E-08 6E-13 79.5 24.7 46 1-47 72-117 (557)
81 KOG1070 rRNA processing protei 99.2 4.7E-09 1E-13 97.0 21.0 215 102-321 1443-1669(1710)
82 KOG4340 Uncharacterized conser 99.2 1.3E-08 2.7E-13 79.5 19.3 284 22-311 11-335 (459)
83 KOG0624 dsRNA-activated protei 99.2 9.5E-08 2.1E-12 76.2 24.2 279 2-288 54-377 (504)
84 KOG1156 N-terminal acetyltrans 99.2 2.1E-07 4.6E-12 80.1 27.8 307 4-317 25-436 (700)
85 KOG2376 Signal recognition par 99.2 5.1E-07 1.1E-11 77.0 29.7 109 2-111 28-138 (652)
86 TIGR03302 OM_YfiO outer membra 99.1 2.5E-08 5.3E-13 79.6 19.5 183 116-316 31-233 (235)
87 cd05804 StaR_like StaR_like; a 99.1 6.3E-07 1.4E-11 76.2 28.7 265 52-318 6-296 (355)
88 PLN02789 farnesyltranstransfer 99.1 1.1E-07 2.4E-12 78.3 22.5 224 97-326 51-311 (320)
89 KOG0548 Molecular co-chaperone 99.1 1.5E-07 3.3E-12 79.2 23.2 314 1-317 17-457 (539)
90 PRK04841 transcriptional regul 99.1 2.6E-07 5.5E-12 88.6 28.3 294 25-318 413-763 (903)
91 KOG1125 TPR repeat-containing 99.1 1.3E-08 2.8E-13 86.2 16.5 209 29-243 293-521 (579)
92 KOG2047 mRNA splicing factor [ 99.1 9.4E-07 2E-11 76.2 27.6 65 267-332 526-595 (835)
93 KOG2376 Signal recognition par 99.1 2.9E-06 6.3E-11 72.5 29.7 144 164-311 356-516 (652)
94 PRK10370 formate-dependent nit 99.0 9.9E-08 2.1E-12 73.3 19.2 120 197-318 52-176 (198)
95 KOG1156 N-terminal acetyltrans 99.0 6E-06 1.3E-10 71.5 30.9 312 3-317 58-470 (700)
96 KOG0548 Molecular co-chaperone 99.0 4.5E-07 9.7E-12 76.5 23.3 283 29-315 10-421 (539)
97 KOG4318 Bicoid mRNA stability 99.0 2.6E-08 5.7E-13 88.4 16.8 247 48-324 21-274 (1088)
98 KOG2047 mRNA splicing factor [ 99.0 1.7E-06 3.8E-11 74.6 27.1 277 22-302 388-710 (835)
99 KOG3081 Vesicle coat complex C 99.0 7.4E-07 1.6E-11 68.7 21.8 259 18-285 7-275 (299)
100 KOG3785 Uncharacterized conser 99.0 4.9E-07 1.1E-11 72.6 21.5 309 1-319 37-494 (557)
101 TIGR03302 OM_YfiO outer membra 99.0 1.4E-07 3.1E-12 75.2 18.2 179 20-213 32-232 (235)
102 KOG1128 Uncharacterized conser 98.9 1.8E-07 3.8E-12 81.6 18.8 210 88-315 403-616 (777)
103 PRK14720 transcript cleavage f 98.9 2.6E-07 5.7E-12 84.7 20.7 230 51-318 30-287 (906)
104 PLN02789 farnesyltranstransfer 98.9 2.2E-06 4.9E-11 70.7 24.4 227 60-290 45-311 (320)
105 KOG3081 Vesicle coat complex C 98.9 5E-07 1.1E-11 69.6 18.8 255 62-334 18-286 (299)
106 PRK15359 type III secretion sy 98.9 8.5E-08 1.8E-12 69.7 14.0 106 189-296 29-136 (144)
107 KOG4162 Predicted calmodulin-b 98.9 3.5E-06 7.6E-11 74.2 25.7 280 3-287 461-789 (799)
108 PF12854 PPR_1: PPR repeat 98.9 2.8E-09 6E-14 55.9 4.2 33 15-47 1-33 (34)
109 KOG4340 Uncharacterized conser 98.9 1E-06 2.2E-11 69.2 19.3 270 1-276 25-334 (459)
110 KOG1070 rRNA processing protei 98.9 1.5E-06 3.2E-11 81.2 23.1 225 52-280 1458-1699(1710)
111 PRK15359 type III secretion sy 98.9 1.3E-07 2.9E-12 68.7 13.5 109 204-317 13-123 (144)
112 PRK10370 formate-dependent nit 98.9 4.1E-07 8.9E-12 69.9 16.5 115 96-212 52-172 (198)
113 COG4783 Putative Zn-dependent 98.8 3.4E-06 7.4E-11 70.7 21.5 177 133-314 252-436 (484)
114 KOG1128 Uncharacterized conser 98.8 4.1E-06 8.8E-11 73.4 22.5 212 56-280 402-615 (777)
115 KOG3617 WD40 and TPR repeat-co 98.8 3.4E-06 7.4E-11 75.0 22.0 75 63-145 811-885 (1416)
116 KOG3617 WD40 and TPR repeat-co 98.8 1.4E-06 3E-11 77.3 19.1 237 20-280 725-995 (1416)
117 PRK04841 transcriptional regul 98.8 2.1E-05 4.6E-10 75.5 29.4 284 32-315 385-720 (903)
118 KOG1127 TPR repeat-containing 98.8 6.7E-07 1.5E-11 80.7 17.2 160 17-177 487-658 (1238)
119 PF12854 PPR_1: PPR repeat 98.8 1.2E-08 2.5E-13 53.5 4.0 33 113-145 2-34 (34)
120 COG5010 TadD Flp pilus assembl 98.8 1E-06 2.2E-11 67.9 15.8 157 51-210 66-228 (257)
121 PRK15179 Vi polysaccharide bio 98.8 4.7E-06 1E-10 75.8 22.5 171 148-328 85-258 (694)
122 KOG3616 Selective LIM binding 98.8 3.6E-06 7.8E-11 74.0 20.6 139 89-246 738-876 (1636)
123 KOG3616 Selective LIM binding 98.8 1.6E-06 3.5E-11 76.1 18.5 144 157-312 740-908 (1636)
124 COG5010 TadD Flp pilus assembl 98.7 1E-05 2.3E-10 62.5 20.6 151 90-244 73-226 (257)
125 KOG0550 Molecular chaperone (D 98.7 7.2E-07 1.6E-11 72.9 13.9 266 56-328 53-363 (486)
126 PRK15179 Vi polysaccharide bio 98.7 9.5E-06 2.1E-10 73.8 22.6 139 51-191 85-229 (694)
127 PRK14720 transcript cleavage f 98.7 5.6E-06 1.2E-10 76.2 20.6 199 16-231 25-268 (906)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 7.7E-07 1.7E-11 74.9 13.7 117 58-175 175-294 (395)
129 TIGR02552 LcrH_SycD type III s 98.7 7.9E-07 1.7E-11 64.2 12.0 97 187-285 20-118 (135)
130 KOG0985 Vesicle coat protein c 98.7 0.0001 2.2E-09 67.5 26.9 251 6-278 967-1246(1666)
131 COG4783 Putative Zn-dependent 98.6 2.8E-05 6E-10 65.4 21.8 135 127-280 315-453 (484)
132 PRK15363 pathogenicity island 98.6 9.7E-07 2.1E-11 63.4 11.5 98 219-316 34-133 (157)
133 KOG0985 Vesicle coat protein c 98.6 0.00012 2.5E-09 67.1 26.6 139 51-205 1103-1241(1666)
134 KOG1914 mRNA cleavage and poly 98.6 0.00024 5.1E-09 60.8 28.2 119 200-320 347-469 (656)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.9E-06 6.3E-11 71.5 15.2 125 120-247 171-295 (395)
136 KOG1127 TPR repeat-containing 98.6 5.9E-06 1.3E-10 74.9 17.4 304 3-311 509-909 (1238)
137 KOG3060 Uncharacterized conser 98.6 4.7E-05 1E-09 58.6 19.7 166 121-289 55-228 (289)
138 TIGR02552 LcrH_SycD type III s 98.6 4.6E-06 1E-10 60.1 14.1 97 220-316 17-115 (135)
139 KOG3060 Uncharacterized conser 98.5 3.5E-05 7.6E-10 59.3 18.1 163 151-317 54-222 (289)
140 PF09976 TPR_21: Tetratricopep 98.5 1.1E-05 2.4E-10 58.9 14.1 110 65-174 24-143 (145)
141 PF09976 TPR_21: Tetratricopep 98.4 2.3E-05 5E-10 57.2 13.8 124 152-277 15-143 (145)
142 TIGR00756 PPR pentatricopeptid 98.4 6.7E-07 1.5E-11 47.4 4.3 33 151-183 2-34 (35)
143 TIGR02795 tol_pal_ybgF tol-pal 98.4 1.6E-05 3.4E-10 55.8 12.4 97 189-285 7-109 (119)
144 PF13414 TPR_11: TPR repeat; P 98.3 2.4E-06 5.2E-11 53.5 6.7 65 251-315 2-67 (69)
145 PF12895 Apc3: Anaphase-promot 98.3 1.2E-06 2.6E-11 57.3 5.5 52 258-310 31-82 (84)
146 TIGR02795 tol_pal_ybgF tol-pal 98.3 2.4E-05 5.2E-10 54.9 12.5 95 222-316 4-106 (119)
147 cd00189 TPR Tetratricopeptide 98.3 9.4E-06 2E-10 54.1 10.0 92 223-314 3-96 (100)
148 PF13812 PPR_3: Pentatricopept 98.3 1.3E-06 2.7E-11 46.0 4.2 33 150-182 2-34 (34)
149 PF05843 Suf: Suppressor of fo 98.3 8.4E-05 1.8E-09 60.6 15.7 132 150-284 2-139 (280)
150 PRK02603 photosystem I assembl 98.3 1.2E-05 2.6E-10 60.6 10.1 46 255-300 75-120 (172)
151 PF12895 Apc3: Anaphase-promot 98.3 5.2E-06 1.1E-10 54.2 7.0 79 163-244 3-82 (84)
152 KOG1130 Predicted G-alpha GTPa 98.3 1.4E-05 3E-10 65.8 10.5 129 186-314 197-343 (639)
153 PF13432 TPR_16: Tetratricopep 98.3 5.1E-06 1.1E-10 51.3 6.5 59 258-316 3-61 (65)
154 COG4235 Cytochrome c biogenesi 98.2 4.4E-05 9.6E-10 60.6 13.0 112 217-328 153-269 (287)
155 PLN03088 SGT1, suppressor of 98.2 1.2E-05 2.6E-10 67.9 10.3 104 190-295 8-113 (356)
156 PF13812 PPR_3: Pentatricopept 98.2 3.3E-06 7.1E-11 44.4 4.4 33 287-319 2-34 (34)
157 PRK02603 photosystem I assembl 98.2 0.00016 3.5E-09 54.4 14.2 130 149-301 35-166 (172)
158 PF04840 Vps16_C: Vps16, C-ter 98.2 0.0029 6.3E-08 52.4 24.0 110 185-311 178-287 (319)
159 TIGR00756 PPR pentatricopeptid 98.2 5.1E-06 1.1E-10 43.9 4.3 33 288-320 2-34 (35)
160 CHL00033 ycf3 photosystem I as 98.1 5E-05 1.1E-09 57.0 11.3 94 219-312 34-139 (168)
161 PLN03088 SGT1, suppressor of 98.1 0.0001 2.2E-09 62.4 14.2 102 155-259 8-110 (356)
162 KOG2053 Mitochondrial inherita 98.1 0.0042 9E-08 56.6 24.3 220 63-285 20-259 (932)
163 KOG2053 Mitochondrial inherita 98.1 0.0035 7.5E-08 57.1 23.7 212 32-246 20-252 (932)
164 PRK10153 DNA-binding transcrip 98.1 0.00025 5.4E-09 62.8 16.7 61 253-314 421-481 (517)
165 KOG1130 Predicted G-alpha GTPa 98.1 0.00013 2.8E-09 60.2 13.7 252 29-280 25-343 (639)
166 PF14938 SNAP: Soluble NSF att 98.1 0.00046 9.9E-09 56.5 17.0 91 154-245 119-221 (282)
167 KOG0553 TPR repeat-containing 98.1 8.1E-05 1.8E-09 58.9 11.5 98 157-259 89-189 (304)
168 COG4700 Uncharacterized protei 98.1 0.0015 3.2E-08 48.2 17.0 134 180-315 85-222 (251)
169 cd00189 TPR Tetratricopeptide 98.1 6.9E-05 1.5E-09 49.7 10.2 91 152-245 3-93 (100)
170 PF13525 YfiO: Outer membrane 98.1 0.00093 2E-08 51.8 17.2 167 123-306 10-198 (203)
171 PF01535 PPR: PPR repeat; Int 98.1 6E-06 1.3E-10 42.3 3.4 30 151-180 2-31 (31)
172 PRK15363 pathogenicity island 98.1 0.0001 2.2E-09 53.2 10.6 89 53-142 36-127 (157)
173 PRK10866 outer membrane biogen 98.1 0.00081 1.7E-08 53.6 16.9 176 121-313 35-239 (243)
174 PF04840 Vps16_C: Vps16, C-ter 98.0 0.0051 1.1E-07 50.9 23.4 258 23-311 2-262 (319)
175 KOG0553 TPR repeat-containing 98.0 2.5E-05 5.3E-10 61.7 7.6 109 193-303 90-200 (304)
176 PF14559 TPR_19: Tetratricopep 98.0 9.3E-06 2E-10 50.6 4.3 55 263-317 2-56 (68)
177 PF14938 SNAP: Soluble NSF att 98.0 0.0004 8.7E-09 56.9 15.0 128 120-247 116-264 (282)
178 PF13371 TPR_9: Tetratricopept 98.0 2.8E-05 6E-10 49.2 6.6 59 260-318 3-61 (73)
179 PF08579 RPM2: Mitochondrial r 98.0 0.00024 5.1E-09 47.7 10.2 81 151-232 27-116 (120)
180 PF13432 TPR_16: Tetratricopep 98.0 4.6E-05 9.9E-10 46.9 6.7 60 226-285 3-64 (65)
181 PRK10866 outer membrane biogen 98.0 0.0057 1.2E-07 48.7 20.6 189 51-246 31-238 (243)
182 COG3898 Uncharacterized membra 98.0 0.0075 1.6E-07 49.9 27.2 281 24-314 85-391 (531)
183 PRK10153 DNA-binding transcrip 97.9 0.00067 1.5E-08 60.1 15.9 140 146-287 334-488 (517)
184 COG4700 Uncharacterized protei 97.9 0.0028 6E-08 46.8 15.8 123 115-242 86-215 (251)
185 CHL00033 ycf3 photosystem I as 97.9 0.00022 4.8E-09 53.5 10.9 59 54-112 37-101 (168)
186 PF01535 PPR: PPR repeat; Int 97.9 2.1E-05 4.5E-10 40.2 3.2 30 288-317 2-31 (31)
187 PF05843 Suf: Suppressor of fo 97.9 0.00056 1.2E-08 55.8 13.1 124 86-211 4-134 (280)
188 PF14559 TPR_19: Tetratricopep 97.9 0.00012 2.6E-09 45.5 7.1 51 94-145 2-52 (68)
189 PRK15331 chaperone protein Sic 97.8 0.00031 6.6E-09 51.0 9.9 89 226-314 43-133 (165)
190 PF10037 MRP-S27: Mitochondria 97.8 0.00029 6.4E-09 60.0 11.4 108 116-224 64-177 (429)
191 KOG1914 mRNA cleavage and poly 97.8 0.014 3.1E-07 50.4 20.7 142 68-210 347-498 (656)
192 PF12688 TPR_5: Tetratrico pep 97.8 0.0017 3.8E-08 45.1 12.9 92 154-245 6-100 (120)
193 PF13414 TPR_11: TPR repeat; P 97.8 0.00015 3.3E-09 45.2 6.8 64 220-283 3-69 (69)
194 PRK10803 tol-pal system protei 97.8 0.00062 1.3E-08 54.7 11.4 99 187-285 146-250 (263)
195 PF13525 YfiO: Outer membrane 97.7 0.012 2.6E-07 45.6 19.5 173 58-239 11-197 (203)
196 PF13281 DUF4071: Domain of un 97.7 0.0088 1.9E-07 50.1 18.0 164 118-284 141-337 (374)
197 PF10037 MRP-S27: Mitochondria 97.7 0.00067 1.4E-08 57.9 11.6 116 16-131 61-186 (429)
198 KOG0550 Molecular chaperone (D 97.7 0.0048 1E-07 51.3 15.8 252 29-283 57-352 (486)
199 PF12688 TPR_5: Tetratrico pep 97.7 0.00072 1.6E-08 47.0 9.7 86 90-175 8-101 (120)
200 KOG2796 Uncharacterized conser 97.7 0.0091 2E-07 46.8 15.8 226 53-284 70-318 (366)
201 PF07079 DUF1347: Protein of u 97.7 0.028 6.1E-07 47.6 22.4 69 243-312 447-521 (549)
202 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.5E-08 44.5 9.0 86 88-196 30-116 (120)
203 KOG1538 Uncharacterized conser 97.6 0.029 6.3E-07 49.7 19.6 269 18-317 553-848 (1081)
204 PRK10803 tol-pal system protei 97.6 0.0021 4.7E-08 51.6 12.2 84 231-314 154-245 (263)
205 PF06239 ECSIT: Evolutionarily 97.6 0.0012 2.6E-08 50.1 10.0 96 139-235 35-153 (228)
206 KOG2796 Uncharacterized conser 97.5 0.01 2.2E-07 46.5 14.6 161 155-323 155-323 (366)
207 PF03704 BTAD: Bacterial trans 97.5 0.00044 9.5E-09 50.5 7.3 69 254-322 64-137 (146)
208 KOG2041 WD40 repeat protein [G 97.5 0.059 1.3E-06 48.3 21.2 56 114-174 848-903 (1189)
209 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00057 1.2E-08 57.9 8.5 99 218-319 73-178 (453)
210 PF13431 TPR_17: Tetratricopep 97.5 8.4E-05 1.8E-09 38.7 2.3 33 275-307 2-34 (34)
211 KOG1538 Uncharacterized conser 97.5 0.037 8E-07 49.1 19.0 95 138-246 736-843 (1081)
212 PF13428 TPR_14: Tetratricopep 97.5 0.00024 5.2E-09 39.6 4.1 41 254-294 3-43 (44)
213 PF13424 TPR_12: Tetratricopep 97.5 0.00045 9.8E-09 44.2 5.8 25 23-47 7-31 (78)
214 COG4235 Cytochrome c biogenesi 97.4 0.018 3.8E-07 46.2 15.3 110 182-294 154-268 (287)
215 PF13424 TPR_12: Tetratricopep 97.4 0.00032 6.8E-09 45.0 4.7 60 254-313 7-73 (78)
216 KOG2280 Vacuolar assembly/sort 97.4 0.096 2.1E-06 47.3 23.5 117 179-311 679-795 (829)
217 PF12921 ATP13: Mitochondrial 97.4 0.0046 1E-07 43.5 10.4 83 149-231 2-99 (126)
218 PF03704 BTAD: Bacterial trans 97.4 0.0045 9.7E-08 45.2 10.6 53 123-175 67-122 (146)
219 KOG2280 Vacuolar assembly/sort 97.3 0.12 2.5E-06 46.8 22.1 293 11-312 422-770 (829)
220 KOG2041 WD40 repeat protein [G 97.3 0.12 2.5E-06 46.6 20.8 127 37-174 679-821 (1189)
221 KOG0543 FKBP-type peptidyl-pro 97.3 0.0075 1.6E-07 50.2 12.3 96 220-315 257-355 (397)
222 KOG1941 Acetylcholine receptor 97.2 0.056 1.2E-06 44.6 16.2 214 32-245 17-271 (518)
223 PF06239 ECSIT: Evolutionarily 97.2 0.0055 1.2E-07 46.7 9.9 104 81-199 45-153 (228)
224 PF13371 TPR_9: Tetratricopept 97.2 0.0024 5.2E-08 40.2 7.0 60 228-287 3-64 (73)
225 KOG1941 Acetylcholine receptor 97.2 0.012 2.7E-07 48.2 12.3 219 62-280 16-274 (518)
226 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.12 2.5E-06 44.1 24.7 63 18-80 39-104 (660)
227 KOG1585 Protein required for f 97.1 0.058 1.3E-06 42.0 14.5 25 55-79 34-58 (308)
228 KOG0543 FKBP-type peptidyl-pro 97.1 0.0061 1.3E-07 50.7 9.9 133 59-212 215-354 (397)
229 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0082 1.8E-07 51.1 10.3 61 183-246 74-138 (453)
230 COG4105 ComL DNA uptake lipopr 97.0 0.11 2.4E-06 40.9 17.0 171 125-314 41-232 (254)
231 PRK15331 chaperone protein Sic 97.0 0.013 2.7E-07 42.8 9.7 83 94-177 48-133 (165)
232 PF13512 TPR_18: Tetratricopep 97.0 0.042 9.1E-07 39.2 12.1 62 226-287 16-82 (142)
233 COG4785 NlpI Lipoprotein NlpI, 97.0 0.1 2.2E-06 40.0 14.4 182 130-317 77-268 (297)
234 PF02259 FAT: FAT domain; Int 97.0 0.19 4.2E-06 42.7 22.3 259 28-299 5-305 (352)
235 PF09205 DUF1955: Domain of un 96.9 0.07 1.5E-06 37.2 13.5 140 159-318 12-152 (161)
236 PF13281 DUF4071: Domain of un 96.9 0.2 4.4E-06 42.2 17.2 167 150-317 142-336 (374)
237 KOG1585 Protein required for f 96.9 0.047 1E-06 42.4 12.2 86 121-207 153-250 (308)
238 PF08631 SPO22: Meiosis protei 96.9 0.18 4E-06 41.2 20.2 49 32-80 4-64 (278)
239 PF04053 Coatomer_WDAD: Coatom 96.9 0.087 1.9E-06 45.9 15.4 163 60-252 269-434 (443)
240 COG3118 Thioredoxin domain-con 96.8 0.19 4.1E-06 40.5 17.4 144 91-238 142-290 (304)
241 COG1729 Uncharacterized protei 96.8 0.022 4.8E-07 45.1 10.2 57 258-314 184-243 (262)
242 PF10300 DUF3808: Protein of u 96.8 0.11 2.4E-06 45.9 15.6 150 58-210 194-373 (468)
243 COG1729 Uncharacterized protei 96.8 0.03 6.5E-07 44.3 10.7 95 151-246 144-241 (262)
244 COG3898 Uncharacterized membra 96.8 0.27 5.8E-06 41.2 25.3 256 18-280 115-391 (531)
245 COG0457 NrfG FOG: TPR repeat [ 96.7 0.19 4.1E-06 39.3 24.2 218 65-284 36-268 (291)
246 KOG4555 TPR repeat-containing 96.6 0.019 4.2E-07 39.8 7.3 84 30-113 52-145 (175)
247 PF10300 DUF3808: Protein of u 96.5 0.41 9E-06 42.4 17.5 161 152-315 191-376 (468)
248 COG0457 NrfG FOG: TPR repeat [ 96.5 0.26 5.7E-06 38.4 22.6 216 97-314 37-264 (291)
249 PF12921 ATP13: Mitochondrial 96.5 0.058 1.3E-06 38.0 9.7 93 184-294 2-96 (126)
250 PRK11906 transcriptional regul 96.4 0.14 3E-06 44.0 12.9 64 251-314 337-400 (458)
251 KOG2114 Vacuolar assembly/sort 96.4 0.83 1.8E-05 42.3 21.5 174 25-210 338-516 (933)
252 COG3118 Thioredoxin domain-con 96.3 0.42 9.1E-06 38.6 17.1 171 134-306 119-292 (304)
253 PF00515 TPR_1: Tetratricopept 96.3 0.0096 2.1E-07 30.8 3.8 31 254-284 3-33 (34)
254 KOG3941 Intermediate in Toll s 96.2 0.075 1.6E-06 42.3 9.6 97 138-235 54-173 (406)
255 COG5107 RNA14 Pre-mRNA 3'-end 96.2 0.74 1.6E-05 39.5 21.3 133 149-284 397-534 (660)
256 PF07719 TPR_2: Tetratricopept 96.1 0.016 3.4E-07 29.9 4.2 31 254-284 3-33 (34)
257 PF13512 TPR_18: Tetratricopep 96.1 0.22 4.8E-06 35.6 10.9 74 122-195 14-93 (142)
258 KOG1920 IkappaB kinase complex 96.1 1.4 3E-05 42.5 18.7 137 125-279 915-1053(1265)
259 smart00299 CLH Clathrin heavy 96.1 0.33 7.1E-06 35.0 14.6 127 152-298 10-137 (140)
260 KOG2610 Uncharacterized conser 96.1 0.12 2.6E-06 42.2 10.4 160 160-322 114-283 (491)
261 PF04184 ST7: ST7 protein; In 96.1 0.27 5.8E-06 42.6 13.0 57 224-280 263-323 (539)
262 COG1747 Uncharacterized N-term 96.0 0.91 2E-05 39.6 17.0 174 51-231 65-250 (711)
263 COG4105 ComL DNA uptake lipopr 96.0 0.57 1.2E-05 37.1 17.8 68 61-128 43-116 (254)
264 PF04184 ST7: ST7 protein; In 96.0 0.93 2E-05 39.5 19.5 145 58-210 174-321 (539)
265 COG3629 DnrI DNA-binding trans 96.0 0.047 1E-06 43.9 8.0 61 254-314 155-215 (280)
266 KOG4234 TPR repeat-containing 95.9 0.068 1.5E-06 40.3 7.7 100 192-293 103-209 (271)
267 KOG1258 mRNA processing protei 95.8 1.3 2.7E-05 39.5 28.7 292 3-300 96-489 (577)
268 KOG4555 TPR repeat-containing 95.7 0.094 2E-06 36.6 7.3 49 129-177 54-105 (175)
269 KOG2610 Uncharacterized conser 95.7 0.98 2.1E-05 37.3 14.5 143 32-175 114-273 (491)
270 PF08631 SPO22: Meiosis protei 95.7 0.99 2.1E-05 37.0 23.4 18 63-80 4-21 (278)
271 smart00299 CLH Clathrin heavy 95.6 0.55 1.2E-05 33.8 14.7 85 87-175 11-95 (140)
272 COG2976 Uncharacterized protei 95.6 0.33 7.2E-06 36.5 10.3 129 151-284 56-191 (207)
273 PF04053 Coatomer_WDAD: Coatom 95.5 0.19 4.2E-06 43.8 10.5 132 22-174 296-427 (443)
274 PRK11906 transcriptional regul 95.5 1.5 3.2E-05 38.1 15.2 62 148-211 337-399 (458)
275 COG4649 Uncharacterized protei 95.5 0.2 4.3E-06 36.9 8.7 132 51-183 58-201 (221)
276 PF13428 TPR_14: Tetratricopep 95.5 0.033 7.1E-07 30.9 3.9 28 86-113 4-31 (44)
277 PF09205 DUF1955: Domain of un 95.4 0.61 1.3E-05 32.8 11.7 59 153-212 90-148 (161)
278 COG4649 Uncharacterized protei 95.3 0.8 1.7E-05 33.9 12.2 131 148-280 58-195 (221)
279 PF13176 TPR_7: Tetratricopept 95.2 0.05 1.1E-06 28.6 3.9 26 288-313 1-26 (36)
280 KOG1920 IkappaB kinase complex 95.1 3.4 7.4E-05 40.1 20.0 101 192-309 947-1049(1265)
281 PF13176 TPR_7: Tetratricopept 95.1 0.048 1E-06 28.6 3.6 23 55-77 2-24 (36)
282 PF10602 RPN7: 26S proteasome 95.1 0.59 1.3E-05 35.3 10.7 96 151-246 38-139 (177)
283 KOG2114 Vacuolar assembly/sort 95.0 2.5 5.3E-05 39.4 15.7 214 85-317 336-552 (933)
284 KOG4648 Uncharacterized conser 95.0 0.066 1.4E-06 43.8 5.6 92 191-285 104-198 (536)
285 KOG1586 Protein required for f 94.9 1.4 3E-05 34.4 12.5 52 234-285 128-187 (288)
286 PF13431 TPR_17: Tetratricopep 94.9 0.049 1.1E-06 28.2 3.2 32 106-138 2-33 (34)
287 PF09613 HrpB1_HrpK: Bacterial 94.8 1.1 2.4E-05 32.8 11.7 108 29-139 18-130 (160)
288 PF13181 TPR_8: Tetratricopept 94.8 0.057 1.2E-06 27.7 3.4 30 255-284 4-33 (34)
289 PF10602 RPN7: 26S proteasome 94.7 0.71 1.5E-05 34.8 10.3 17 129-145 124-140 (177)
290 COG3629 DnrI DNA-binding trans 94.7 0.32 7E-06 39.3 8.7 55 122-176 157-214 (280)
291 PF07079 DUF1347: Protein of u 94.7 2.6 5.6E-05 36.4 21.4 251 30-285 15-331 (549)
292 PRK09687 putative lyase; Provi 94.6 2.1 4.6E-05 35.1 26.8 237 44-296 29-277 (280)
293 KOG1464 COP9 signalosome, subu 94.2 2.3 5.1E-05 34.0 19.2 257 15-277 20-328 (440)
294 PF00515 TPR_1: Tetratricopept 94.1 0.15 3.2E-06 26.2 4.0 27 151-177 3-29 (34)
295 PRK11619 lytic murein transgly 93.8 5.6 0.00012 37.0 26.2 117 197-313 254-373 (644)
296 PF07719 TPR_2: Tetratricopept 93.5 0.22 4.7E-06 25.4 4.0 30 287-316 2-31 (34)
297 KOG0276 Vesicle coat complex C 93.2 4.8 0.0001 36.2 13.5 123 130-280 598-720 (794)
298 KOG4642 Chaperone-dependent E3 92.9 0.66 1.4E-05 36.2 7.1 78 235-312 25-104 (284)
299 TIGR02561 HrpB1_HrpK type III 92.8 0.56 1.2E-05 33.7 6.2 96 222-318 9-109 (153)
300 KOG2396 HAT (Half-A-TPR) repea 92.7 6.7 0.00014 34.5 19.9 238 38-285 299-564 (568)
301 PF13374 TPR_10: Tetratricopep 92.7 0.28 6.1E-06 26.4 3.8 18 260-277 10-27 (42)
302 KOG4234 TPR repeat-containing 92.6 0.43 9.3E-06 36.2 5.7 87 92-178 104-197 (271)
303 cd00923 Cyt_c_Oxidase_Va Cytoc 92.6 1.2 2.6E-05 29.3 6.9 62 164-227 22-83 (103)
304 PF09613 HrpB1_HrpK: Bacterial 92.6 3.1 6.8E-05 30.5 11.8 49 129-177 21-72 (160)
305 PRK09687 putative lyase; Provi 92.6 5.1 0.00011 32.9 26.7 235 18-263 34-278 (280)
306 PF13170 DUF4003: Protein of u 92.5 3 6.4E-05 34.5 11.0 46 2-47 78-129 (297)
307 TIGR02561 HrpB1_HrpK type III 92.4 3.1 6.8E-05 30.0 10.8 64 31-94 20-87 (153)
308 KOG0276 Vesicle coat complex C 92.3 2.7 5.9E-05 37.7 10.8 133 22-175 615-747 (794)
309 PF13174 TPR_6: Tetratricopept 92.2 0.24 5.3E-06 24.9 3.0 23 292-314 6-28 (33)
310 PF00637 Clathrin: Region in C 92.0 0.084 1.8E-06 38.2 1.5 129 88-235 12-140 (143)
311 PF02284 COX5A: Cytochrome c o 91.8 2 4.3E-05 28.6 7.3 59 167-227 28-86 (108)
312 PF07035 Mic1: Colon cancer-as 91.8 4.2 9.1E-05 30.2 15.7 135 169-316 14-150 (167)
313 PF00637 Clathrin: Region in C 91.7 0.23 5.1E-06 35.9 3.5 117 3-133 24-140 (143)
314 PF13374 TPR_10: Tetratricopep 91.6 0.42 9.2E-06 25.6 3.7 26 54-79 4-29 (42)
315 TIGR02508 type_III_yscG type I 91.6 2.8 6.2E-05 27.8 8.8 28 61-88 48-75 (115)
316 PF11207 DUF2989: Protein of u 91.4 3 6.5E-05 31.9 9.0 21 219-239 177-197 (203)
317 PF10345 Cohesin_load: Cohesin 91.3 12 0.00026 34.7 23.7 49 262-310 371-428 (608)
318 KOG2066 Vacuolar assembly/sort 91.3 12 0.00027 34.8 20.6 126 22-149 393-536 (846)
319 PF13174 TPR_6: Tetratricopept 91.3 0.48 1E-05 23.8 3.5 30 256-285 4-33 (33)
320 KOG0890 Protein kinase of the 91.2 23 0.0005 37.7 22.7 66 251-318 1669-1734(2382)
321 PF07721 TPR_4: Tetratricopept 91.2 0.34 7.5E-06 23.1 2.7 23 288-310 3-25 (26)
322 KOG4648 Uncharacterized conser 91.2 0.82 1.8E-05 37.8 6.2 53 60-112 105-160 (536)
323 KOG3941 Intermediate in Toll s 91.1 3.3 7.2E-05 33.5 9.2 105 81-200 65-174 (406)
324 PF11207 DUF2989: Protein of u 90.8 2 4.3E-05 32.8 7.5 71 31-103 117-198 (203)
325 PRK10941 hypothetical protein; 90.6 2.3 5.1E-05 34.5 8.4 64 255-318 184-247 (269)
326 COG2909 MalT ATP-dependent tra 90.5 16 0.00035 34.7 21.0 200 128-331 425-663 (894)
327 PF13181 TPR_8: Tetratricopept 90.3 0.8 1.7E-05 23.2 3.9 29 287-315 2-30 (34)
328 PRK12798 chemotaxis protein; R 90.3 11 0.00024 32.4 20.0 185 131-318 125-327 (421)
329 PF07035 Mic1: Colon cancer-as 90.3 6.1 0.00013 29.4 13.7 48 6-53 14-61 (167)
330 KOG4570 Uncharacterized conser 90.2 5.9 0.00013 32.6 10.0 99 113-213 59-164 (418)
331 smart00028 TPR Tetratricopepti 90.1 0.56 1.2E-05 22.8 3.3 22 260-281 9-30 (34)
332 PF14853 Fis1_TPR_C: Fis1 C-te 90.1 0.49 1.1E-05 27.4 3.1 32 257-288 6-37 (53)
333 COG3947 Response regulator con 90.1 1.5 3.3E-05 35.4 6.7 59 256-314 283-341 (361)
334 PRK15180 Vi polysaccharide bio 90.0 3.4 7.3E-05 36.0 9.1 116 197-314 302-419 (831)
335 COG2976 Uncharacterized protei 89.9 7.3 0.00016 29.7 13.9 89 91-179 97-189 (207)
336 PF13929 mRNA_stabil: mRNA sta 89.7 9.8 0.00021 31.0 11.1 113 165-277 144-263 (292)
337 PF02259 FAT: FAT domain; Int 89.5 12 0.00026 31.7 19.6 70 249-318 143-216 (352)
338 PF06552 TOM20_plant: Plant sp 89.4 7.5 0.00016 29.2 9.7 44 268-318 96-139 (186)
339 cd00923 Cyt_c_Oxidase_Va Cytoc 89.4 2.9 6.2E-05 27.6 6.4 39 9-47 30-68 (103)
340 PF06552 TOM20_plant: Plant sp 89.3 2.9 6.3E-05 31.3 7.3 27 3-30 8-34 (186)
341 PF07721 TPR_4: Tetratricopept 89.3 1 2.2E-05 21.4 3.5 20 123-142 6-25 (26)
342 PF02284 COX5A: Cytochrome c o 89.2 3 6.4E-05 27.9 6.4 31 50-80 43-73 (108)
343 COG4455 ImpE Protein of avirul 88.8 2.4 5.1E-05 32.9 6.6 72 223-294 4-80 (273)
344 COG3947 Response regulator con 88.7 12 0.00026 30.6 12.5 68 120-187 281-356 (361)
345 PF13170 DUF4003: Protein of u 88.7 13 0.00027 30.9 17.7 126 99-227 78-224 (297)
346 TIGR03504 FimV_Cterm FimV C-te 88.5 0.93 2E-05 25.0 3.3 27 291-317 4-30 (44)
347 PRK15180 Vi polysaccharide bio 88.3 2.1 4.5E-05 37.3 6.7 109 5-115 309-423 (831)
348 PF09477 Type_III_YscG: Bacter 88.2 6.1 0.00013 26.7 9.4 12 60-71 48-59 (116)
349 COG1747 Uncharacterized N-term 88.1 19 0.0004 32.1 22.9 175 117-298 65-251 (711)
350 TIGR02508 type_III_yscG type I 88.0 6 0.00013 26.4 7.9 79 98-179 20-98 (115)
351 KOG4570 Uncharacterized conser 87.9 11 0.00023 31.2 10.0 131 13-145 12-162 (418)
352 KOG1464 COP9 signalosome, subu 87.6 13 0.00029 29.9 20.0 236 2-245 43-328 (440)
353 cd08819 CARD_MDA5_2 Caspase ac 87.0 4.6 9.9E-05 26.1 6.1 65 102-168 21-85 (88)
354 KOG0545 Aryl-hydrocarbon recep 86.8 12 0.00027 29.7 9.5 57 260-316 238-294 (329)
355 TIGR03504 FimV_Cterm FimV C-te 86.4 1.8 3.9E-05 23.9 3.7 23 155-177 5-27 (44)
356 KOG4507 Uncharacterized conser 86.4 9.1 0.0002 34.5 9.6 139 18-157 568-718 (886)
357 KOG1308 Hsp70-interacting prot 86.1 0.64 1.4E-05 38.3 2.5 88 232-319 126-215 (377)
358 COG2909 MalT ATP-dependent tra 85.9 33 0.00072 32.7 26.3 219 93-311 425-684 (894)
359 COG4455 ImpE Protein of avirul 85.9 6.8 0.00015 30.5 7.6 77 152-229 4-81 (273)
360 PF14561 TPR_20: Tetratricopep 85.7 3.4 7.4E-05 27.1 5.4 53 251-303 21-75 (90)
361 PRK11619 lytic murein transgly 85.2 33 0.00071 32.1 27.4 94 227-320 414-510 (644)
362 KOG1258 mRNA processing protei 85.1 29 0.00063 31.4 25.1 118 185-306 298-420 (577)
363 PRK13800 putative oxidoreducta 84.9 42 0.0009 33.0 26.5 255 41-314 624-880 (897)
364 KOG1550 Extracellular protein 84.9 31 0.00068 31.6 21.9 113 64-179 261-394 (552)
365 KOG2471 TPR repeat-containing 84.7 28 0.00061 30.8 12.0 104 126-232 248-381 (696)
366 smart00386 HAT HAT (Half-A-TPR 84.6 2.3 4.9E-05 21.0 3.5 29 266-294 1-29 (33)
367 PF10579 Rapsyn_N: Rapsyn N-te 84.4 4.3 9.3E-05 25.7 5.0 19 224-242 47-65 (80)
368 PF04910 Tcf25: Transcriptiona 84.4 25 0.00055 30.1 14.9 56 259-314 110-167 (360)
369 PF10579 Rapsyn_N: Rapsyn N-te 84.1 1.7 3.6E-05 27.4 3.1 46 264-309 18-66 (80)
370 cd08819 CARD_MDA5_2 Caspase ac 84.0 9.2 0.0002 24.8 6.7 66 5-72 21-86 (88)
371 KOG2471 TPR repeat-containing 83.1 33 0.00071 30.4 13.8 106 194-299 250-382 (696)
372 KOG4507 Uncharacterized conser 82.7 6.8 0.00015 35.2 7.2 95 197-294 620-718 (886)
373 KOG0551 Hsp90 co-chaperone CNS 82.4 9 0.0002 31.8 7.4 90 223-312 84-179 (390)
374 KOG4642 Chaperone-dependent E3 82.1 24 0.00051 28.1 10.8 118 128-247 20-144 (284)
375 KOG4077 Cytochrome c oxidase, 81.8 13 0.00028 26.0 6.9 72 167-249 67-138 (149)
376 PF09477 Type_III_YscG: Bacter 81.8 14 0.00029 25.1 9.6 81 96-179 19-99 (116)
377 COG4785 NlpI Lipoprotein NlpI, 81.6 23 0.00051 27.7 17.0 180 94-282 76-267 (297)
378 KOG0991 Replication factor C, 81.0 26 0.00056 27.8 10.4 56 128-184 202-273 (333)
379 PF09670 Cas_Cas02710: CRISPR- 80.7 37 0.0008 29.4 12.2 52 159-211 141-196 (379)
380 KOG0376 Serine-threonine phosp 80.6 2.2 4.7E-05 37.0 3.6 95 191-288 11-108 (476)
381 KOG2300 Uncharacterized conser 80.3 42 0.0009 29.8 18.4 122 57-178 328-474 (629)
382 COG5159 RPN6 26S proteasome re 80.0 32 0.00068 28.2 15.0 49 91-139 11-66 (421)
383 PF04190 DUF410: Protein of un 79.5 32 0.00069 27.9 18.8 83 116-213 88-170 (260)
384 KOG1550 Extracellular protein 79.2 52 0.0011 30.2 17.4 178 134-319 228-430 (552)
385 PHA02875 ankyrin repeat protei 78.9 44 0.00095 29.2 13.2 169 6-184 15-196 (413)
386 PF14689 SPOB_a: Sensor_kinase 78.8 5 0.00011 24.1 3.9 29 51-79 22-50 (62)
387 PRK13800 putative oxidoreducta 78.6 72 0.0016 31.5 27.7 247 18-280 632-880 (897)
388 PF10345 Cohesin_load: Cohesin 78.3 59 0.0013 30.3 27.0 172 4-176 39-252 (608)
389 PF11846 DUF3366: Domain of un 78.0 15 0.00033 28.1 7.4 36 248-283 140-175 (193)
390 PF14669 Asp_Glu_race_2: Putat 76.7 31 0.00068 26.3 11.1 58 189-246 137-207 (233)
391 PF11846 DUF3366: Domain of un 76.6 8 0.00017 29.6 5.5 47 269-316 128-174 (193)
392 COG4976 Predicted methyltransf 76.4 7 0.00015 30.6 4.9 55 231-285 6-62 (287)
393 KOG4279 Serine/threonine prote 76.4 68 0.0015 30.3 11.5 26 158-185 296-321 (1226)
394 PF07163 Pex26: Pex26 protein; 76.2 41 0.00089 27.5 9.6 84 124-207 89-181 (309)
395 PF10255 Paf67: RNA polymerase 76.1 14 0.0003 32.1 7.1 28 286-313 164-191 (404)
396 KOG2066 Vacuolar assembly/sort 75.8 73 0.0016 30.1 21.9 145 28-177 363-533 (846)
397 COG5159 RPN6 26S proteasome re 75.5 44 0.00094 27.4 18.2 186 27-212 9-234 (421)
398 KOG3364 Membrane protein invol 75.0 24 0.00052 25.2 6.7 71 217-287 29-106 (149)
399 PF07163 Pex26: Pex26 protein; 74.9 30 0.00065 28.2 8.1 83 90-172 90-181 (309)
400 PF14669 Asp_Glu_race_2: Putat 74.9 35 0.00077 26.1 14.7 178 15-209 2-206 (233)
401 PF10255 Paf67: RNA polymerase 74.7 23 0.0005 30.8 8.0 56 121-176 125-191 (404)
402 PF10366 Vps39_1: Vacuolar sor 74.5 24 0.00053 24.0 8.6 27 151-177 41-67 (108)
403 cd00280 TRFH Telomeric Repeat 74.5 28 0.00062 26.3 7.4 31 227-257 118-148 (200)
404 PF12968 DUF3856: Domain of Un 74.2 27 0.00058 24.4 7.4 57 255-311 58-125 (144)
405 KOG2396 HAT (Half-A-TPR) repea 74.1 65 0.0014 28.8 22.2 239 69-313 299-557 (568)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 73.1 30 0.00064 24.4 8.2 42 270-311 81-124 (126)
407 PF04097 Nic96: Nup93/Nic96; 73.1 82 0.0018 29.5 15.7 86 157-247 266-354 (613)
408 cd00280 TRFH Telomeric Repeat 73.1 27 0.00058 26.5 7.0 20 61-80 120-139 (200)
409 KOG4814 Uncharacterized conser 73.0 22 0.00047 32.6 7.6 88 229-316 363-458 (872)
410 PF14689 SPOB_a: Sensor_kinase 73.0 9.5 0.00021 22.9 4.0 44 68-111 6-51 (62)
411 KOG2300 Uncharacterized conser 72.8 69 0.0015 28.5 15.9 150 160-311 334-510 (629)
412 PF13934 ELYS: Nuclear pore co 72.5 46 0.001 26.3 15.4 21 190-210 114-134 (226)
413 PF04190 DUF410: Protein of un 71.9 52 0.0011 26.7 15.2 82 218-315 88-170 (260)
414 PF14853 Fis1_TPR_C: Fis1 C-te 71.8 17 0.00037 21.0 4.9 29 155-185 7-35 (53)
415 KOG1839 Uncharacterized protei 71.5 82 0.0018 31.7 11.5 153 128-280 942-1127(1236)
416 PF12862 Apc5: Anaphase-promot 71.2 27 0.00057 23.0 7.1 49 32-80 9-69 (94)
417 PF14863 Alkyl_sulf_dimr: Alky 70.8 26 0.00057 25.3 6.5 64 236-302 57-120 (141)
418 KOG0403 Neoplastic transformat 69.7 73 0.0016 28.0 9.6 107 26-133 514-631 (645)
419 KOG1586 Protein required for f 69.4 56 0.0012 26.0 17.1 89 88-181 98-186 (288)
420 PF10366 Vps39_1: Vacuolar sor 69.0 25 0.00055 24.0 5.9 26 86-111 42-67 (108)
421 PF11817 Foie-gras_1: Foie gra 68.7 24 0.00052 28.3 6.7 55 88-142 183-242 (247)
422 KOG4521 Nuclear pore complex, 68.5 1.3E+02 0.0029 30.1 13.3 148 60-207 928-1125(1480)
423 KOG0686 COP9 signalosome, subu 68.2 80 0.0017 27.4 13.3 59 22-80 151-215 (466)
424 KOG0545 Aryl-hydrocarbon recep 68.2 61 0.0013 26.0 9.3 59 120-178 232-293 (329)
425 KOG3807 Predicted membrane pro 68.0 73 0.0016 26.8 12.8 53 193-245 284-336 (556)
426 PF12926 MOZART2: Mitotic-spin 67.8 30 0.00064 22.4 5.4 41 7-47 29-69 (88)
427 PRK10941 hypothetical protein; 67.5 67 0.0015 26.2 10.8 71 153-225 185-256 (269)
428 PF04910 Tcf25: Transcriptiona 67.3 82 0.0018 27.1 16.8 64 148-211 99-166 (360)
429 PRK10564 maltose regulon perip 66.8 14 0.0003 30.4 4.8 39 150-188 258-296 (303)
430 KOG4077 Cytochrome c oxidase, 66.6 21 0.00046 25.1 5.0 33 48-80 80-112 (149)
431 PF11663 Toxin_YhaV: Toxin wit 66.4 8.2 0.00018 27.4 3.0 32 160-193 106-137 (140)
432 PF11817 Foie-gras_1: Foie gra 66.1 29 0.00063 27.9 6.7 72 39-110 163-245 (247)
433 PF12862 Apc5: Anaphase-promot 65.9 35 0.00076 22.4 8.1 54 160-213 9-70 (94)
434 KOG0376 Serine-threonine phosp 65.4 15 0.00032 32.2 5.0 99 59-158 11-114 (476)
435 PF09986 DUF2225: Uncharacteri 64.5 67 0.0015 25.2 9.2 31 288-318 167-197 (214)
436 PRK10564 maltose regulon perip 64.1 12 0.00025 30.8 3.9 39 281-319 252-290 (303)
437 PF12069 DUF3549: Protein of u 63.5 92 0.002 26.4 12.9 87 123-212 171-258 (340)
438 PF13762 MNE1: Mitochondrial s 63.4 55 0.0012 23.8 8.4 77 55-131 42-128 (145)
439 PF11838 ERAP1_C: ERAP1-like C 62.9 90 0.002 26.1 19.8 81 200-280 146-229 (324)
440 COG5191 Uncharacterized conser 62.8 29 0.00062 28.8 5.8 80 215-294 102-184 (435)
441 KOG3824 Huntingtin interacting 62.1 17 0.00037 30.0 4.5 59 230-288 126-186 (472)
442 TIGR02270 conserved hypothetic 61.4 1.1E+02 0.0025 26.8 24.7 192 40-247 88-279 (410)
443 KOG0686 COP9 signalosome, subu 60.8 1.1E+02 0.0025 26.5 14.8 26 55-80 153-178 (466)
444 PF13762 MNE1: Mitochondrial s 60.6 63 0.0014 23.5 10.7 76 122-197 43-128 (145)
445 PRK11639 zinc uptake transcrip 60.5 60 0.0013 24.3 7.0 58 177-236 19-76 (169)
446 PF04034 DUF367: Domain of unk 60.0 58 0.0013 22.9 7.2 60 219-278 65-125 (127)
447 COG0735 Fur Fe2+/Zn2+ uptake r 60.0 64 0.0014 23.4 7.3 63 171-235 8-70 (145)
448 smart00777 Mad3_BUB1_I Mad3/BU 59.8 32 0.00069 24.2 5.1 40 38-77 80-124 (125)
449 KOG1498 26S proteasome regulat 58.5 1.2E+02 0.0027 26.2 13.6 101 224-328 135-254 (439)
450 COG4941 Predicted RNA polymera 58.1 1.2E+02 0.0025 25.8 9.2 117 165-285 272-398 (415)
451 KOG1839 Uncharacterized protei 57.2 1.8E+02 0.0039 29.6 10.9 61 20-80 972-1043(1236)
452 PF07720 TPR_3: Tetratricopept 56.8 27 0.0006 18.2 4.1 13 262-274 11-23 (36)
453 KOG0687 26S proteasome regulat 56.6 1.2E+02 0.0026 25.5 12.7 25 186-210 106-130 (393)
454 KOG2297 Predicted translation 56.4 1.2E+02 0.0026 25.4 8.4 52 18-71 162-215 (412)
455 PF02184 HAT: HAT (Half-A-TPR) 55.9 27 0.00058 17.8 3.5 25 267-292 2-26 (32)
456 COG5108 RPO41 Mitochondrial DN 55.8 1.2E+02 0.0025 28.5 8.8 87 25-111 32-131 (1117)
457 COG0790 FOG: TPR repeat, SEL1 55.5 1.2E+02 0.0025 25.0 20.2 49 133-181 92-145 (292)
458 KOG4567 GTPase-activating prot 55.2 1.1E+02 0.0023 25.6 7.8 42 7-48 264-305 (370)
459 COG5108 RPO41 Mitochondrial DN 54.8 1.4E+02 0.0031 27.9 9.2 77 154-230 33-113 (1117)
460 COG0735 Fur Fe2+/Zn2+ uptake r 54.8 80 0.0017 22.9 7.6 45 154-198 25-69 (145)
461 KOG2034 Vacuolar sorting prote 53.7 2.2E+02 0.0048 27.7 22.8 69 28-100 365-433 (911)
462 PF09670 Cas_Cas02710: CRISPR- 53.6 1.5E+02 0.0033 25.7 9.2 56 91-147 139-198 (379)
463 PF06957 COPI_C: Coatomer (COP 53.3 1.6E+02 0.0035 26.0 10.5 32 254-285 302-333 (422)
464 PF08424 NRDE-2: NRDE-2, neces 52.5 1.4E+02 0.0031 25.1 17.4 159 147-319 17-213 (321)
465 COG2912 Uncharacterized conser 52.3 75 0.0016 25.9 6.6 57 260-316 189-245 (269)
466 PF08311 Mad3_BUB1_I: Mad3/BUB 52.0 82 0.0018 22.2 9.6 43 101-143 81-124 (126)
467 KOG0508 Ankyrin repeat protein 51.4 1.8E+02 0.0039 26.0 9.0 45 248-292 332-382 (615)
468 PF09986 DUF2225: Uncharacteri 51.0 1.1E+02 0.0024 24.0 7.4 23 192-214 173-195 (214)
469 PF10475 DUF2450: Protein of u 50.9 1.4E+02 0.0031 24.7 9.6 168 124-296 104-275 (291)
470 PF15297 CKAP2_C: Cytoskeleton 50.3 1.2E+02 0.0025 25.9 7.5 60 236-296 119-185 (353)
471 PF11838 ERAP1_C: ERAP1-like C 50.0 1.5E+02 0.0033 24.7 14.0 78 165-246 146-227 (324)
472 cd07153 Fur_like Ferric uptake 49.6 56 0.0012 22.4 5.1 44 156-199 7-50 (116)
473 PF11848 DUF3368: Domain of un 48.6 48 0.001 18.6 4.9 29 162-190 15-43 (48)
474 PF14561 TPR_20: Tetratricopep 48.3 76 0.0016 20.8 7.3 30 217-246 19-48 (90)
475 KOG1308 Hsp70-interacting prot 47.3 8.2 0.00018 32.2 0.6 92 94-186 125-219 (377)
476 KOG3364 Membrane protein invol 47.2 1.1E+02 0.0023 22.1 5.9 19 193-211 80-98 (149)
477 cd08326 CARD_CASP9 Caspase act 47.1 77 0.0017 20.5 6.3 40 32-71 41-80 (84)
478 PF13929 mRNA_stabil: mRNA sta 46.9 1.7E+02 0.0036 24.3 21.2 114 132-245 142-263 (292)
479 PF08424 NRDE-2: NRDE-2, neces 46.9 1.8E+02 0.0038 24.6 15.9 120 99-219 47-189 (321)
480 COG5191 Uncharacterized conser 46.7 29 0.00063 28.8 3.6 67 249-315 104-171 (435)
481 PF04097 Nic96: Nup93/Nic96; 45.5 2.7E+02 0.0057 26.2 16.9 84 124-210 264-353 (613)
482 PF07575 Nucleopor_Nup85: Nup8 45.4 30 0.00064 31.9 4.0 23 163-185 509-531 (566)
483 PF00244 14-3-3: 14-3-3 protei 44.9 1.6E+02 0.0035 23.5 14.8 163 154-317 6-200 (236)
484 cd07153 Fur_like Ferric uptake 44.8 68 0.0015 21.9 4.9 47 89-135 6-52 (116)
485 PF12069 DUF3549: Protein of u 44.8 2E+02 0.0043 24.5 11.0 172 17-196 122-310 (340)
486 KOG0687 26S proteasome regulat 44.8 1.9E+02 0.0042 24.4 8.4 112 200-313 84-208 (393)
487 PF01475 FUR: Ferric uptake re 44.7 65 0.0014 22.3 4.8 47 88-134 12-58 (120)
488 PF15297 CKAP2_C: Cytoskeleton 44.6 83 0.0018 26.7 5.9 65 65-129 115-186 (353)
489 PF12968 DUF3856: Domain of Un 43.9 1.1E+02 0.0024 21.5 10.3 61 220-280 55-128 (144)
490 KOG2422 Uncharacterized conser 43.6 2.7E+02 0.0058 25.7 14.5 155 128-283 248-450 (665)
491 PF01475 FUR: Ferric uptake re 43.5 48 0.001 23.0 4.0 43 156-198 14-56 (120)
492 COG4976 Predicted methyltransf 43.3 80 0.0017 25.1 5.3 58 193-252 4-62 (287)
493 PHA02537 M terminase endonucle 43.0 1.7E+02 0.0037 23.3 8.6 22 264-285 190-211 (230)
494 PF05053 Menin: Menin; InterP 42.9 2.7E+02 0.0059 25.6 9.8 44 37-80 295-346 (618)
495 PF09454 Vps23_core: Vps23 cor 42.8 77 0.0017 19.3 4.9 50 81-131 6-55 (65)
496 smart00804 TAP_C C-terminal do 42.6 22 0.00047 21.5 1.8 21 1-21 40-61 (63)
497 COG5187 RPN7 26S proteasome re 42.0 1.2E+02 0.0026 25.1 6.2 101 216-316 77-185 (412)
498 KOG0292 Vesicle coat complex C 42.0 3.5E+02 0.0076 26.6 10.2 135 29-181 651-785 (1202)
499 KOG4279 Serine/threonine prote 41.8 3.3E+02 0.0071 26.2 10.0 177 105-284 185-398 (1226)
500 PRK02287 hypothetical protein; 41.7 1.5E+02 0.0032 22.3 7.7 60 220-279 107-167 (171)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-57 Score=414.87 Aligned_cols=327 Identities=38% Similarity=0.710 Sum_probs=312.3
Q ss_pred HHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh----cC
Q 037592 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----ID 82 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 82 (337)
+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..+|..+||++|.+|++.|++++|+++|++|.+ ||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 33333344455566677788999999999999999999999999999999999999999999999999999976 99
Q ss_pred cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhC
Q 037592 83 LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162 (337)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (337)
..||+.++.+|++.|++++|.+++..|.+.|+.|+..+++.|+++|++.|++++|.++|++|..||..+||+||.+|++.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
|+.++|+++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+..|+.|+..+|+.++.+|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCC
Q 037592 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 322 (337)
+++++..|+..+|++++.+|...|+++.|..+++++.+..|++..+|..|+.+|.+.|+|++|.+++++|.+.|+++.|+
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred Ccceecccccc
Q 037592 323 KSWIEANSKLN 333 (337)
Q Consensus 323 ~~~~~~~~~~~ 333 (337)
.+|+++.+.++
T Consensus 565 ~s~i~~~~~~~ 575 (697)
T PLN03081 565 CTWIEVKKQDH 575 (697)
T ss_pred eeEEEECCeEE
Confidence 99999987765
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-54 Score=403.87 Aligned_cols=332 Identities=34% Similarity=0.678 Sum_probs=318.0
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
+++|.++++.|.+.|+.|+..+|++|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|..
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 5677888888888888888888899999999999999999999999999999999999999999999999999999986
Q ss_pred --cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHH
Q 037592 81 --IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158 (337)
Q Consensus 81 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 158 (337)
||..||+.++.+|++.|+.+.+.+++..+++.|+.++..+++.|+++|++.|++++|.++|+++ .+|..+||++|.+
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~ 563 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTG 563 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..|+.|+..+|+.++.+|++.|++++
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999997678999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
|.+++++|+.+||..+|++|+.+|..+|+.+.++...+++.++.|+++..|..|...|...|+|++|.++.+.|++.|++
T Consensus 644 A~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 644 AYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeccccccC
Q 037592 319 KMPGKSWIEANSKLNH 334 (337)
Q Consensus 319 ~~~~~~~~~~~~~~~~ 334 (337)
++|+.|||++.+.++.
T Consensus 724 k~~g~s~ie~~~~~~~ 739 (857)
T PLN03077 724 VDPGCSWVEVKGKVHA 739 (857)
T ss_pred CCCCccEEEECCEEEE
Confidence 9999999999987753
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4e-53 Score=389.49 Aligned_cols=322 Identities=22% Similarity=0.275 Sum_probs=307.3
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc----cCChhhHHHHHHHHHcCCChhHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML----KKNSVSSSALLQGYCQTGDFESVIRIFR 76 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 76 (337)
+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999995 6899999999999999999999999999
Q ss_pred HHhh----cCcccHHHHHHHHHhhchhhhhHHHHHHHHH--hhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC----C
Q 037592 77 EMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIR--RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP----V 146 (337)
Q Consensus 77 ~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~ 146 (337)
+|.+ ||..+|+.++.+|++.|++++|.+++++|.. .|+.||..+|+.++.+|++.|++++|.++|++|. .
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9987 9999999999999999999999999999987 5788999999999999999999999999999998 5
Q ss_pred CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHH
Q 037592 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226 (337)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (337)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|. +.|+.|+..+|+.|
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~-k~G~~pd~~tynsL 690 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR-KQGIKLGTVSYSSL 690 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999994 55999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHh---cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh--cCCCccchHHHHHHHHHHcCC
Q 037592 227 VDLLGRAGLLEEAETLIENA---DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~ 301 (337)
+.+|++.|++++|.++|++| +..||..+|+.+|.+|++.|++++|.++|++|.+ ..|+ ..+|..++.+|.+.|+
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCC
Confidence 99999999999999999987 5789999999999999999999999999999987 6688 7999999999999999
Q ss_pred hhhHHHHHHHHHHhCCccCCCCc
Q 037592 302 WNDAFKIRTLMKYSGVKKMPGKS 324 (337)
Q Consensus 302 ~~~A~~~~~~m~~~~~~~~~~~~ 324 (337)
+++|.+++++|.+.|+.|+....
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999876543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-51 Score=380.22 Aligned_cols=326 Identities=20% Similarity=0.292 Sum_probs=294.7
Q ss_pred CchhhHHHHHHHHhcCCC--------------------------------CchHhHHHHHHHHHhcCChHHHHHHHHHc-
Q 037592 1 RLKQGKEVHAKVITLGLC--------------------------------GNVVVESSLVDMYGKCGLVDESHRVFDKM- 47 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 47 (337)
++++|+++|+.|.+.|+. ||..+|+.++.+|++.|++++|.++|+.|
T Consensus 385 ~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~ 464 (1060)
T PLN03218 385 RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ 464 (1060)
T ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 356777777777776642 67888999999999999999999999998
Q ss_pred ---ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh----cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchh
Q 037592 48 ---LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120 (337)
Q Consensus 48 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 120 (337)
..||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 465 ~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 457899999999999999999999999999986 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
|+.++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 9999999999999999999999984 5889999999999999999999999999999999999999999999999
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh---cCCCchhHHHHHHHHHhcCCChhHH
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA---DCRHDSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 271 (337)
++.|++++|.++|++| ...|+.||..+|+.++.+|++.|++++|.+++++| +..|+..+|+.+|.+|++.|++++|
T Consensus 625 ~k~G~~deAl~lf~eM-~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 625 SQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999 45599999999999999999999999999999886 5789999999999999999999999
Q ss_pred HHHHHHHHh--cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 272 ERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 272 ~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
.++|++|.+ ..|+ ..+|+.|+.+|++.|++++|.++|++|.+.|+.|+..+....+
T Consensus 704 ~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 704 LELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999976 5677 7899999999999999999999999999999998766544443
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.7e-52 Score=376.89 Aligned_cols=319 Identities=25% Similarity=0.478 Sum_probs=302.4
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..||..+|+.++.+|++.|++++|+++|++|.+
T Consensus 139 ~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 139 IRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHH
Q 037592 81 ---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157 (337)
Q Consensus 81 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 157 (337)
||..+|..++.+|...|..+.+.+++..+.+.|..|+..+++.|+.+|++.|++++|.++|++|..+|..+||.+|.
T Consensus 219 g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~ 298 (697)
T PLN03081 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLA 298 (697)
T ss_pred CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 037592 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+ .|++||..+++.|+.+|+++|+++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999999999999999954 599999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh--cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH-
Q 037592 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY- 314 (337)
Q Consensus 238 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~- 314 (337)
+|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+ ..|+ ..+|..++.+|.+.|..++|.++|+.|.+
T Consensus 378 ~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 378 DARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 9999999996 57999999999999999999999999999987 7788 79999999999999999999999999986
Q ss_pred hCCccCCCC
Q 037592 315 SGVKKMPGK 323 (337)
Q Consensus 315 ~~~~~~~~~ 323 (337)
.|+.|+..+
T Consensus 456 ~g~~p~~~~ 464 (697)
T PLN03081 456 HRIKPRAMH 464 (697)
T ss_pred cCCCCCccc
Confidence 699887654
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-49 Score=370.00 Aligned_cols=317 Identities=28% Similarity=0.461 Sum_probs=296.6
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|..||..+|+.+|.+|++.|++++|+++|++|.+
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4567777888888888888999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHH
Q 037592 81 ---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157 (337)
Q Consensus 81 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 157 (337)
||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|..+|..+|+.+|.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 037592 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+++ .|+.++..++++|+.+|+++|+++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHH
Confidence 99999999999999999986 5999999999999999999999999999999955 499999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh--cCCCccchHHHHHHHHHHcCChhhHHHHHHHHH-H
Q 037592 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK-Y 314 (337)
Q Consensus 238 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~ 314 (337)
+|.++|+++ .||..+|+++|.+|++.|+.++|.++|++|.+ ..|+ ..+|..++.+|.+.|++++|.++|++|. +
T Consensus 542 ~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 542 YAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 999999988 78999999999999999999999999999987 6677 7899999999999999999999999998 6
Q ss_pred hCCccCCCC
Q 037592 315 SGVKKMPGK 323 (337)
Q Consensus 315 ~~~~~~~~~ 323 (337)
.|+.|+..+
T Consensus 619 ~gi~P~~~~ 627 (857)
T PLN03077 619 YSITPNLKH 627 (857)
T ss_pred hCCCCchHH
Confidence 788886543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.9e-24 Score=204.96 Aligned_cols=311 Identities=11% Similarity=0.068 Sum_probs=247.0
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc---cCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML---KKNSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|..+++.+.+.+ +.+...+..++..+.+.|++++|..+++.+. ..+...|..++.++...|++++|...|++
T Consensus 548 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 548 NEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred CHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4578888888888765 4566778888888999999999999998884 23567788888999999999999999998
Q ss_pred Hhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHh
Q 037592 78 MEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLIT 151 (337)
Q Consensus 78 ~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 151 (337)
+.+ | +...+..+..++...|++++|..+++++.+..+ .+..++..++..+...|++++|..+++.+. +.+...
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 705 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG 705 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHH
Confidence 877 3 445677788888888999999999988887754 567788888888888899999988888886 345667
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
+..+...+...|++++|...|+++...+ |+..++..+..++.+.|++++|.+.++.+++. .+.+...+..++..|.
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 7778888888888888888888888753 44466677778888888888888888888654 3566778888888888
Q ss_pred hcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHH
Q 037592 232 RAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 232 ~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
..|++++|.+.|+++ . .+++...++.+...+...|+ ++|+..++++.+..|+++..+..++.++...|++++|..++
T Consensus 782 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred HCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888875 2 33456667777778888888 77888888888888888888888888888888888888888
Q ss_pred HHHHHhCCc
Q 037592 310 TLMKYSGVK 318 (337)
Q Consensus 310 ~~m~~~~~~ 318 (337)
+++.+.+..
T Consensus 861 ~~a~~~~~~ 869 (899)
T TIGR02917 861 RKAVNIAPE 869 (899)
T ss_pred HHHHhhCCC
Confidence 888876653
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=3.6e-24 Score=202.98 Aligned_cols=306 Identities=15% Similarity=0.084 Sum_probs=172.7
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFREM 78 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (337)
+++|.++++.+.+.+ +.+..++..+...+.+.|+.++|...|+++.. .+...+..++..+...|++++|.++++++
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445566666665543 33455555566666666666666666665522 13344555556666666666666666665
Q ss_pred hh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhH
Q 037592 79 EE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITW 152 (337)
Q Consensus 79 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 152 (337)
.+ .+...|..+..++...|++++|...++++.+..+ .+...+..+..++.+.|++++|..+++++. +.+..++
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 672 (899)
T TIGR02917 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672 (899)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 54 2334555556666666666666666666655543 344555556666666666666666665554 2234555
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037592 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (337)
..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.++.++.. .|+..++..++.++.+
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHH
Confidence 556666666666666666666665543 224444555555555666666666666665432 3444555555666666
Q ss_pred cCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHH
Q 037592 233 AGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 233 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
.|++++|.+.++++ . .+.+...+..+...|...|++++|...|+++.+..|+++..+..++..+...|+ .+|+..++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 66666666665553 1 223344455555556666666666666666666666655566666666666666 55666666
Q ss_pred HHHH
Q 037592 311 LMKY 314 (337)
Q Consensus 311 ~m~~ 314 (337)
+..+
T Consensus 828 ~~~~ 831 (899)
T TIGR02917 828 KALK 831 (899)
T ss_pred HHHh
Confidence 5554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=1.8e-24 Score=185.81 Aligned_cols=290 Identities=13% Similarity=0.084 Sum_probs=243.4
Q ss_pred HHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCc------ccHHHHHHHHHhh
Q 037592 27 LVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE-IDL------FSFGIVLRACAGL 96 (337)
Q Consensus 27 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~ 96 (337)
....+...|++++|+..|+++... +..++..+...+...|++++|..+++.+.. |+. ..+..++..+...
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 455667889999999999999533 456788999999999999999999999987 332 3577788999999
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC--Cc------HHhHHHHHHHHHhCCCHhHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--RN------LITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a 168 (337)
|++++|..+|+++.+..+ .+..++..++.++.+.|++++|.+.++++.. |+ ...+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999998744 6678899999999999999999999998863 21 12456678888999999999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK--IEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ..+++.++.+|...|++++|...++++
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998853 224557777888999999999999999999654 333 466788999999999999999999985
Q ss_pred -cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH---cCChhhHHHHHHHHHHhCCccCCC
Q 037592 247 -DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA---VGRWNDAFKIRTLMKYSGVKKMPG 322 (337)
Q Consensus 247 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 322 (337)
...|+...+..++..+.+.|++++|..+++++.+..|++ ..+..++..+.. .|+.+++..++++|.+++++|+|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~-~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL-RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH-HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 456777777888899999999999999999999999995 567666666554 468999999999999999998888
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4.2e-23 Score=177.33 Aligned_cols=276 Identities=12% Similarity=0.114 Sum_probs=232.1
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCC-------hhhHHHHHHHHHcCCChhHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN-------SVSSSALLQGYCQTGDFESVIR 73 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~ 73 (337)
++++|...|..+.+.+ +.+..++..+...+...|++++|..+++.+.... ...+..++..|.+.|++++|..
T Consensus 50 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 50 QPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred ChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4678999999999975 4466789999999999999999999999984431 2457888999999999999999
Q ss_pred HHHHHhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCc----hhHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 037592 74 IFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV----IIESALVDLYAKCGCVDFAHQIFLQMP- 145 (337)
Q Consensus 74 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~- 145 (337)
+|+++.+ .+..++..++.++.+.|++++|.+.++.+.+.++.+.. ..+..+...+.+.|++++|...|+++.
T Consensus 129 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 129 LFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 9999987 45568889999999999999999999999987654322 245567888899999999999999987
Q ss_pred --CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH
Q 037592 146 --VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 146 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (337)
+.+...+..++..|.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++.+.+. .|+...+
T Consensus 209 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~ 285 (389)
T PRK11788 209 ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLL 285 (389)
T ss_pred HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHH
Confidence 23456788899999999999999999999988643333456788889999999999999999999643 5676777
Q ss_pred HHHHHHHHhcCChHHHHHHHHH-hcCCCchhHHHHHHHHHhc---CCChhHHHHHHHHHHh
Q 037592 224 NCMVDLLGRAGLLEEAETLIEN-ADCRHDSSLWEVLLGACTT---FRNAHVAERVAKKIME 280 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 280 (337)
..++..+.+.|++++|..++++ +...|+..++..++..+.. .|+.+++..+++++.+
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 8899999999999999999986 4667898889888877653 5689999999998886
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=7.7e-21 Score=171.51 Aligned_cols=312 Identities=10% Similarity=-0.015 Sum_probs=251.4
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|+.+++..+..... +...+..++..+...|++++|...|+++. .| +...+..+...+...|++++|+..+++
T Consensus 57 ~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~ 135 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ 135 (656)
T ss_pred CcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467889999999887533 34555666677778999999999999983 34 567788899999999999999999999
Q ss_pred Hhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC----cHH
Q 037592 78 MEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR----NLI 150 (337)
Q Consensus 78 ~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~ 150 (337)
+.+ |+ ...+..+..++...|++++|...++.+....+. +...+..+ ..+...|++++|...++++... +..
T Consensus 136 Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 136 AWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 988 54 446777888999999999999999988877653 33444333 3478899999999999987632 334
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhh----HHHHHHHHHHhcCCCCCHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR----GRKHFASMTKEYRIKPKIEHYNCM 226 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l 226 (337)
.+..+..++...|++++|+..++++.+... .+...+..+...+...|++++ |...++++++.. +.+...+..+
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~l 290 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLY 290 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHH
Confidence 455567788999999999999999988643 355667778888999999986 899999997542 4457888999
Q ss_pred HHHHHhcCChHHHHHHHHHh-cCCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhh
Q 037592 227 VDLLGRAGLLEEAETLIENA-DCRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWND 304 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 304 (337)
...+...|++++|...+++. ...|+ ...+..+..++.+.|++++|+..++++.+..|++...+..++.++...|++++
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999974 34444 45566777889999999999999999999999976666667888999999999
Q ss_pred HHHHHHHHHHhCCc
Q 037592 305 AFKIRTLMKYSGVK 318 (337)
Q Consensus 305 A~~~~~~m~~~~~~ 318 (337)
|...|++..+....
T Consensus 371 A~~~l~~al~~~P~ 384 (656)
T PRK15174 371 AESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHhChh
Confidence 99999998776443
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.8e-20 Score=169.35 Aligned_cols=310 Identities=13% Similarity=0.044 Sum_probs=210.9
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|+..|+..++. .|+...|..+..+|.+.|++++|++.++..+.. +...|..+..+|...|++++|+..|..
T Consensus 142 ~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 142 DFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred CHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467888999888876 577788888889999999999999999888433 455777788888888888877654432
Q ss_pred Hhh--------------------------------cC-------------------------------------------
Q 037592 78 MEE--------------------------------ID------------------------------------------- 82 (337)
Q Consensus 78 ~~~--------------------------------~~------------------------------------------- 82 (337)
... |.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence 211 00
Q ss_pred -------------------------------cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 037592 83 -------------------------------LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131 (337)
Q Consensus 83 -------------------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (337)
...+..+...+...|++++|...+++.++..+ .....|..+..++...
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLEL 378 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHC
Confidence 01123333344455666666666666665532 3345566666666677
Q ss_pred CCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHH
Q 037592 132 GCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208 (337)
Q Consensus 132 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 208 (337)
|++++|+..|+++. +.+..+|..+...+...|++++|+..|++..+... .+...+..+...+.+.|++++|+..++
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77777777766654 23456677777777777777777777777776422 234455566677777888888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCch-h-------HHHHHHHHHhcCCChhHHHHHHHHHH
Q 037592 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDS-S-------LWEVLLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
.+++. .+.+...++.+...+...|++++|.+.|++. ...|+. . .++.....+...|++++|..+++++.
T Consensus 458 ~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 458 RCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77543 2445677777888888888888888888763 333321 1 11112222344688888888888888
Q ss_pred hcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 280 ELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 280 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+++|++..++..++.++...|++++|+..|++..+..
T Consensus 536 ~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 536 IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 8888887788888889999999999999888876643
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=6e-22 Score=165.82 Aligned_cols=309 Identities=12% Similarity=0.114 Sum_probs=220.2
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCCh-----------------------------
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS----------------------------- 52 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------------------------- 52 (337)
+++|+.+++.+++.. +-.+..|..+..++...|+.+.|...|.+.+..|+
T Consensus 132 ~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 132 LQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 566777777777763 22456677777777777777777777666532211
Q ss_pred --------hhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhH
Q 037592 53 --------VSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121 (337)
Q Consensus 53 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 121 (337)
..|..|...+-.+|+...|++.|++... |+ ..+|..|...|...+.++.|...|.+++...+ ....++
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~ 289 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAH 289 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhc
Confidence 1244444555555666666666666555 22 13566666666666666666666666665543 345556
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC--CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMP--VR-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 198 (337)
..+...|...|.++.|+..+++.. +| -+.+|+.|..++-..|+..+|.+.|.+.+.... -...+.+.|...+...|
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQG 368 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhc
Confidence 666666667777777777777766 33 356888888888888888888888888877422 23456777888888888
Q ss_pred chhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCch-hHHHHHHHHHhcCCChhHHHHHH
Q 037592 199 LIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHDS-SLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
.++.|..+|...++ +.|. ....+.|...|.+.|++++|...+++ +.++|+. ..++.+...|...|+.+.|++.+
T Consensus 369 ~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 369 KIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred cchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 88888888888763 3454 56778888888889999999988886 5677764 46778888888889999999999
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.+++.++|....+++.|...|-.+|+..+|++-|++..+-.
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999888888899999999999999999888877643
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=3.1e-20 Score=167.59 Aligned_cols=309 Identities=10% Similarity=-0.029 Sum_probs=245.7
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|...++.+.+.. +.+...+..+...+...|++++|+..|++... | +...+..++.++...|++++|...++.
T Consensus 91 ~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 91 QPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 4688999999999885 44667888889999999999999999999843 4 567888999999999999999999998
Q ss_pred Hhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhH
Q 037592 78 MEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITW 152 (337)
Q Consensus 78 ~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 152 (337)
+.. |+.......+..+...|++++|...++.+++..+.++......+...+...|++++|+..++++. +.+...+
T Consensus 170 ~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~ 249 (656)
T PRK15174 170 QAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR 249 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 876 55544333344578899999999999999887654555555666788999999999999999887 3456788
Q ss_pred HHHHHHHHhCCCHhH----HHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037592 153 NSMISGFAQNGRGEE----ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (337)
..+...|...|++++ |...|++..+... .+...+..+...+...|++++|...+++++... +.+...+..+..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 889999999999986 8999999988532 255678888899999999999999999997542 445677888899
Q ss_pred HHHhcCChHHHHHHHHHh-cCCCchhHHH-HHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHH
Q 037592 229 LLGRAGLLEEAETLIENA-DCRHDSSLWE-VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 306 (337)
++.+.|++++|...++++ ...|+...+. .+..++...|++++|+..|+++.+..|++. ...+++|.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~ 394 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGL 394 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHH
Confidence 999999999999999985 3556554433 345678999999999999999999999853 24455666
Q ss_pred HHHHHHHHhCCccCCCCcc
Q 037592 307 KIRTLMKYSGVKKMPGKSW 325 (337)
Q Consensus 307 ~~~~~m~~~~~~~~~~~~~ 325 (337)
..+.+..+.--.|.....|
T Consensus 395 ~~~~~~~~~~~~~~~~~~W 413 (656)
T PRK15174 395 LALDGQISAVNLPPERLDW 413 (656)
T ss_pred HHHHHHHHhcCCccchhhH
Confidence 6666666544333333344
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-21 Score=164.36 Aligned_cols=304 Identities=15% Similarity=0.136 Sum_probs=211.9
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccH-HHHHH
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSF-GIVLR 91 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~ 91 (337)
+.-..+|+.+.+.+-..|+++.|+..++.+++. ....|..+..++...|+.+.|.+.|.+..+ |+.... +.+..
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 334678999999999999999999999998443 477899999999999999999999999998 554433 23444
Q ss_pred HHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCc---HHhHHHHHHHHHhCCCHhHH
Q 037592 92 ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN---LITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 168 (337)
.....|+..+|...|.++++..+ .-...|+.|...+-.+|+...|+..|++...-| ..+|-.|...|...+.++.|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 45567788888888888777644 346677778888888888888888888777333 35677777777777777777
Q ss_pred HHHHHHHHhcCCCCC-HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 169 LRIFDDMTEGGTKPD-HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
...|.+.... .|+ ...+..+...|-..|.+|.|+..|++.++ +.|+ +..|+.|..++...|++.+|...+.+.
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 7777776663 443 34555566666677777777777777753 3444 566777777777777777777777652
Q ss_pred -cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCc
Q 037592 247 -DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324 (337)
Q Consensus 247 -~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 324 (337)
...| ...+.+.|...|...|+++.|..+|..+.+..|.....++.|...|-++|+.++|+..|++..+ ++|..+-+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda 424 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADA 424 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHH
Confidence 2222 2344566666666666666666666666666666666666666666666666666666666555 44444443
Q ss_pred ceecc
Q 037592 325 WIEAN 329 (337)
Q Consensus 325 ~~~~~ 329 (337)
...++
T Consensus 425 ~~NmG 429 (966)
T KOG4626|consen 425 LSNMG 429 (966)
T ss_pred HHhcc
Confidence 33333
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=2.5e-19 Score=172.06 Aligned_cols=207 Identities=9% Similarity=0.029 Sum_probs=117.5
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--CCh---hhHH------------HHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNS---VSSS------------ALLQGYC 63 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~------------~l~~~~~ 63 (337)
++++|+..|+..++.. +.+..++..+...+.+.|++++|+..|++... |+. ..|. .....+.
T Consensus 284 ~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 284 QGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3567888888887764 33667777888888888888888888887743 221 1121 2234567
Q ss_pred cCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 037592 64 QTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140 (337)
Q Consensus 64 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 140 (337)
+.|++++|+..|+++.+ | +...+..+..++...|++++|++.|+++++..+ .+...+..+...|. .++.++|+.+
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~ 440 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAF 440 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHH
Confidence 78888888888888877 3 334566677788888888888888888887654 33444444444432 2233444444
Q ss_pred HhcCCCCc------------HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHH
Q 037592 141 FLQMPVRN------------LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208 (337)
Q Consensus 141 ~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 208 (337)
++.+.... ...+..+...+...|++++|+..|++..+..+. +...+..+...+.+.|++++|...++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 43332100 011222333444455555555555555443111 22233334444555555555555555
Q ss_pred HHH
Q 037592 209 SMT 211 (337)
Q Consensus 209 ~~~ 211 (337)
+++
T Consensus 520 ~al 522 (1157)
T PRK11447 520 RLA 522 (1157)
T ss_pred HHH
Confidence 543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.5e-18 Score=155.59 Aligned_cols=291 Identities=14% Similarity=0.007 Sum_probs=233.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc--ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhc
Q 037592 23 VESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLA 97 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~ 97 (337)
.+......+.+.|++++|+..|++. ..|+...|..+..+|.+.|++++|++.+++..+ |+ ..++..+..++...|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 3556778899999999999999998 456778899999999999999999999999998 43 347888899999999
Q ss_pred hhhhhHHHHHHHHHhhCC-----------------------------CCchhHHHHHH----------------------
Q 037592 98 ALRLGKEVHCQYIRRSGC-----------------------------KDVIIESALVD---------------------- 126 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~-----------------------------~~~~~~~~l~~---------------------- 126 (337)
++++|...+..+...+.. ++...+..+..
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 999998766544322110 11001111100
Q ss_pred --------HH------HhcCCHHHHHHHHhcCCC-----C-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC-Hh
Q 037592 127 --------LY------AKCGCVDFAHQIFLQMPV-----R-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD-HV 185 (337)
Q Consensus 127 --------~~------~~~g~~~~A~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~ 185 (337)
.. ...+++++|.+.|++... | ....|+.+...+...|++++|+..|++..+. .|+ ..
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~ 366 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQ 366 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHH
Confidence 00 113578899999987762 2 3457888889999999999999999999885 454 45
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACT 263 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 263 (337)
.|..+...+...|++++|...++.+++.. +.+..++..+...+...|++++|...|++. ...| +...+..+..++.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 77778888899999999999999997642 455789999999999999999999999974 4445 4566777788899
Q ss_pred cCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+.|++++|+..++++++..|+++..+..++.++...|++++|+..|++..+...
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999887543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=2.6e-18 Score=165.15 Aligned_cols=304 Identities=11% Similarity=0.058 Sum_probs=176.3
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|...|+.+++.. +.+...+..+..++...|++++|++.|+++.. | +...+..+...|. .++.++|+.+++.
T Consensus 366 ~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~ 443 (1157)
T PRK11447 366 NLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIAS 443 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHh
Confidence 4678889999998874 44566778888999999999999999999843 3 3444554544442 2344555554443
Q ss_pred Hhhc------------CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 78 MEEI------------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 78 ~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
+... ....+..+...+...|++++|.+.++++++..+ .+..++..+...|.+.|++++|+..++++.
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3220 011223333444445555555555555554433 233444445555555555555555555443
Q ss_pred --CC-cHHhHHH--------------------------------------------HHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 146 --VR-NLITWNS--------------------------------------------MISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 146 --~~-~~~~~~~--------------------------------------------l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
.| +...+.. +...+...|+.++|..+++ .
T Consensus 523 ~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~- 598 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR---Q- 598 (1157)
T ss_pred HcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---h-
Confidence 11 2222222 2334445555555555544 1
Q ss_pred CCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCC-chhHHH
Q 037592 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD-CRH-DSSLWE 256 (337)
Q Consensus 179 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 256 (337)
.+++...+..+...+.+.|++++|+..|+.+++.. +.+...+..++..|...|++++|++.++.+. ..| +...+.
T Consensus 599 -~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~ 675 (1157)
T PRK11447 599 -QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675 (1157)
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence 23344445556666677777777777777775432 3456666777777777777777777777642 233 233445
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCcc------chHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 257 VLLGACTTFRNAHVAERVAKKIMELKPDCH------LSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 257 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
.+..++...|++++|.++++++.+..|+++ ..+..++..+...|++++|+..|++...
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555666677777777777777776554432 2445556667777777777777777654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=4.3e-17 Score=150.36 Aligned_cols=311 Identities=10% Similarity=-0.005 Sum_probs=188.8
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
+.++|++++....... +.+...+..+...+.+.|++++|..+|++.+ .| +...+..++..+...|++++|+..+++
T Consensus 30 ~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 30 QDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3567777887777632 4455568888888888888888888888862 23 466677788888888888888888888
Q ss_pred Hhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC---------
Q 037592 78 MEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--------- 146 (337)
Q Consensus 78 ~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------- 146 (337)
+.+ |+...+..+..++...|+.++|...++++++..+ .+...+..+..++...|..++|++.+++...
T Consensus 109 ~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~ 187 (765)
T PRK10049 109 LVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLE 187 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHH
Confidence 877 4433377777788888888888888888888765 4455555566666666665555544442221
Q ss_pred ------------------------------------------CcHH-hH----HHHHHHHHhCCCHhHHHHHHHHHHhcC
Q 037592 147 ------------------------------------------RNLI-TW----NSMISGFAQNGRGEEALRIFDDMTEGG 179 (337)
Q Consensus 147 ------------------------------------------~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~ 179 (337)
|+.. .+ ...+..+...|++++|+..|+++.+.+
T Consensus 188 ~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 188 ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 1000 00 000123345567777777777776654
Q ss_pred CC-CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCC-----
Q 037592 180 TK-PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP--KIEHYNCMVDLLGRAGLLEEAETLIENAD-CRH----- 250 (337)
Q Consensus 180 ~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----- 250 (337)
.+ |+.. ...+...+...|++++|+.+|+.++......+ .......+..++...|++++|..+++++. ..|
T Consensus 268 ~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~ 346 (765)
T PRK10049 268 QIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL 346 (765)
T ss_pred CCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee
Confidence 22 3221 12234566677777777777777653211110 12334455556666777777777666542 111
Q ss_pred --------ch---hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 251 --------DS---SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 251 --------~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+. ..+..+...+...|+.++|++.++++....|+++..+..++..+...|++++|++.+++..+
T Consensus 347 ~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 347 YGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11 12233444555666666666666666666666666666666666666666666666665555
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=8.5e-17 Score=148.38 Aligned_cols=315 Identities=10% Similarity=-0.037 Sum_probs=232.9
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|..+++..++.. +.+...+..++..+...|++++|+..++++.. | +.. +..+..++...|+.++|+..+++
T Consensus 64 ~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 64 QWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 4678999999988874 44566777888899999999999999999833 3 455 88888999999999999999999
Q ss_pred Hhh--cCcc-cHHHHHHHHHhhchh----------------------------------------------hhhHHHHHH
Q 037592 78 MEE--IDLF-SFGIVLRACAGLAAL----------------------------------------------RLGKEVHCQ 108 (337)
Q Consensus 78 ~~~--~~~~-~~~~l~~~~~~~~~~----------------------------------------------~~a~~~~~~ 108 (337)
+.+ |+.. .+..+..++...+.. ++|+..++.
T Consensus 142 al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 142 ALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 988 5543 333344444433333 344555555
Q ss_pred HHHhh-CCCCch-hH----HHHHHHHHhcCCHHHHHHHHhcCCCCc---H-HhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 109 YIRRS-GCKDVI-IE----SALVDLYAKCGCVDFAHQIFLQMPVRN---L-ITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 109 ~~~~~-~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
+++.- ..|+.. .+ ...+..+...|++++|+..|+++...+ + .....+...|...|++++|+..|+++.+.
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 55431 112211 11 111334567799999999999998431 1 12233577899999999999999998765
Q ss_pred CCCC---CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC----------CCCC---HHHHHHHHHHHHhcCChHHHHHH
Q 037592 179 GTKP---DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR----------IKPK---IEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 179 ~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
.... .......+..++...|++++|.++++.+..... -.|+ ...+..++..+...|++++|+++
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3221 123455566678899999999999999865321 0123 23556778889999999999999
Q ss_pred HHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 243 IENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 243 ~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
++++ . .+.+...+..+...+...|++++|++.++++++..|++...+..++..+...|++++|..+++++.+...
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9985 3 3345667788888999999999999999999999999999999999999999999999999999987543
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=1e-15 Score=142.03 Aligned_cols=305 Identities=10% Similarity=-0.020 Sum_probs=223.4
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc-C-----ChhhHHHHHHHHHcCCC---hhHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-K-----NSVSSSALLQGYCQTGD---FESVIR 73 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~---~~~A~~ 73 (337)
.++...+..|.+.. +-+....-.+.....+.|+.++|.++|++... + +...-.-++..|.+.+. ..+++.
T Consensus 359 ~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 45566666666652 33566666666777889999999999998844 2 22234466777777765 333333
Q ss_pred H----------------------HHHHhh-----c---CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHH
Q 037592 74 I----------------------FREMEE-----I---DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123 (337)
Q Consensus 74 ~----------------------~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 123 (337)
+ ++.... | +...|..+..++.. ++.++|...+.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 3 222222 2 34456667766665 78888999888887764 44444444
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH-hHHHHHHHHHhhcCch
Q 037592 124 LVDLYAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH-VSFIGVLSACSHMGLI 200 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~ 200 (337)
+...+...|++++|...|+++. .|+...+..+..++.+.|++++|...+++..+.. |+. ..+..+.......|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCH
Confidence 4555578999999999998776 3455566777888889999999999999988754 333 2333333444456999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
++|...++++++. .|+...+..+..++.+.|++++|+..+++. ...| +...++.+..++...|++++|+..++++
T Consensus 593 ~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999743 567888899999999999999999999874 4445 4455667777899999999999999999
Q ss_pred HhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 279 MELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 279 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.+..|+++..+..++.++...|++++|...+++..+..
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999887654
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=5.4e-19 Score=144.45 Aligned_cols=252 Identities=15% Similarity=0.168 Sum_probs=111.4
Q ss_pred HHHHHcCCChhHHHHHHHHHh-h---c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 037592 59 LQGYCQTGDFESVIRIFREME-E---I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133 (337)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~~-~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (337)
...+.+.|++++|++++++.. . | |...|..+...+...++++.|...++++...+. .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 445556666666666664322 1 2 223344444555666777777777777777654 356667777776 68899
Q ss_pred HHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC-CCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 134 VDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 134 ~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
+++|.+++++.- .+++..+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.++++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998887764 4566777788888999999999999999977543 3456667777888889999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
++.. +.|......++..+...|+.+++.++++... .+.++..|..+..++...|++++|+..+++.....|+++..
T Consensus 173 l~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 173 LELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 8653 4457888899999999999999888887642 24456678888999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 289 YVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
...++.++...|+.++|.++.++..+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999877643
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=1.1e-15 Score=133.79 Aligned_cols=322 Identities=14% Similarity=0.134 Sum_probs=244.4
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc---ccCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM---LKKNSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|..++.++++.. +.....|.+|...|-..|+.+++...+--+ .+.|...|-.+.....+.|++++|.-+|.+
T Consensus 154 ~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5789999999999885 557788999999999999999998877555 344778899999999999999999999999
Q ss_pred Hhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhH----HHHHHHHHhcCCHHHHHHHHhcCCC----
Q 037592 78 MEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE----SALVDLYAKCGCVDFAHQIFLQMPV---- 146 (337)
Q Consensus 78 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~---- 146 (337)
+.+ ++...+-.-...|-+.|+...|...|.++....++.+..-+ ...++.+...++-+.|.+.++....
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 998 33334445567788999999999999999998764343322 2345667777888889988887763
Q ss_pred -CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC---------------------------CCCCHhHHHHHHHHHhhcC
Q 037592 147 -RNLITWNSMISGFAQNGRGEEALRIFDDMTEGG---------------------------TKPDHVSFIGVLSACSHMG 198 (337)
Q Consensus 147 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------------------------~~p~~~~~~~l~~~~~~~~ 198 (337)
-+...++.++..|.+...++.|......+.... ..++...+. ++-++....
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~ 391 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICLVHLK 391 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-Hhhhhhccc
Confidence 244578889999999999999999888776611 122222212 222334444
Q ss_pred chhhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCC---CchhHHHHHHHHHhcCCChhHHHH
Q 037592 199 LIDRGRKHFASMTKEYRI--KPKIEHYNCMVDLLGRAGLLEEAETLIENADCR---HDSSLWEVLLGACTTFRNAHVAER 273 (337)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 273 (337)
..+....+.....+. .+ .-+...|.-+..+|...|++.+|+++|..+... .+...|-.+..+|...|.++.|..
T Consensus 392 ~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 392 ERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred ccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 444444444444333 43 334678899999999999999999999987433 245678999999999999999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcc
Q 037592 274 VAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325 (337)
Q Consensus 274 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 325 (337)
.|++++...|++...-..|...+.+.|+.++|.++++.|..-+....++..|
T Consensus 471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 471 FYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999999999999999999999999999887333222244444
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=1.8e-15 Score=140.56 Aligned_cols=310 Identities=9% Similarity=-0.009 Sum_probs=238.5
Q ss_pred chhhHHHHHHHHhc-C-CCCchHhHHHHHHHHHhcCC---hHHHHHH-------------------------HHHcc---
Q 037592 2 LKQGKEVHAKVITL-G-LCGNVVVESSLVDMYGKCGL---VDESHRV-------------------------FDKML--- 48 (337)
Q Consensus 2 ~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~A~~~-------------------------~~~~~--- 48 (337)
.++|.++|+..... + -.++......|+..|.+.+. ...+..+ +....
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 46788888887763 1 23344556678888888766 3333222 11222
Q ss_pred cC--ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHH
Q 037592 49 KK--NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124 (337)
Q Consensus 49 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 124 (337)
.+ +...|..+..++.. +++++|+..+.+... |+......+...+...|++++|...++++... +|+...+..+
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 12 55678888888876 899999998888877 76544334455557899999999999998665 3445556777
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCc---HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchh
Q 037592 125 VDLYAKCGCVDFAHQIFLQMPVRN---LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201 (337)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 201 (337)
..++.+.|+.++|...+++....+ ...+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.+
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHH
Confidence 888999999999999999887432 233333444455669999999999999984 567788888889999999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037592 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
+|...+++++... +.+...++.+..++...|++++|+..+++. ...| +...+..+..++...|++++|+..++++.
T Consensus 627 eA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 627 AAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999997542 455778888999999999999999999974 4444 56678888899999999999999999999
Q ss_pred hcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 280 ELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 280 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
++.|++...............+++.|.+.+++-...++.
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999998888888899999989999999988876665443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=2.1e-14 Score=130.97 Aligned_cols=158 Identities=11% Similarity=0.059 Sum_probs=107.2
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHh
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR----IKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 232 (337)
-++...|++.++++.|+.+...|.+....+-..+..+|...+++++|..+++.+....+ .+++......|.-+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 34556677778888888877766553444666777888888888888888887755432 12233445667777888
Q ss_pred cCChHHHHHHHHHhcC-C-------------Cch--hH-HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHH
Q 037592 233 AGLLEEAETLIENADC-R-------------HDS--SL-WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295 (337)
Q Consensus 233 ~g~~~~A~~~~~~~~~-~-------------~~~--~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 295 (337)
.+++++|..+++++.. . |+. .. ...++..+.-.|+..+|++.++++....|.+......+...
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v 459 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASI 459 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888888888776521 1 111 11 22344557777888888888888877888877777788888
Q ss_pred HHHcCChhhHHHHHHHHHH
Q 037592 296 YRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~ 314 (337)
+...|.+.+|.+.++....
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 460 YLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHhcCCHHHHHHHHHHHhh
Confidence 8888888888887755444
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=4.1e-15 Score=127.11 Aligned_cols=274 Identities=11% Similarity=0.065 Sum_probs=211.1
Q ss_pred hcCChHHHHHHHHHcccC--ChhhHH-HHHHHHHcCCChhHHHHHHHHHhh--cCcccHH--HHHHHHHhhchhhhhHHH
Q 037592 33 KCGLVDESHRVFDKMLKK--NSVSSS-ALLQGYCQTGDFESVIRIFREMEE--IDLFSFG--IVLRACAGLAALRLGKEV 105 (337)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~--~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~ 105 (337)
-.|+++.|.+.+...... ++..+. ....+..+.|+++.|.+++.++.+ |+..... .....+...|+++.|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 369999999998876443 233333 334556899999999999999988 5554333 336688899999999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC---cH--------HhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR---NL--------ITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
++++.+..+ .+..+...+...|.+.|+|++|.+++..+.+. +. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 999999875 67888889999999999999999999888722 11 1333444444445566666777776
Q ss_pred HHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCch-
Q 037592 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDS- 252 (337)
Q Consensus 175 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~- 252 (337)
+-+. .+.+......+...+...|+.++|.++++..++. +|++... ++.+....++.+++.+..++. ...|+.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 6443 3446677888889999999999999999998753 5665332 233444569999999999874 445544
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 253 SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 253 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
.....+...|.+.+++++|.+.|+.+.+..|+ ...+..+..++.+.|+.++|.+++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667778899999999999999999999999 57788999999999999999999997654
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=3.1e-14 Score=121.74 Aligned_cols=273 Identities=11% Similarity=0.016 Sum_probs=210.4
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHH-HHHHHhcCChHHHHHHHHHccc--CChhhHH--HHHHHHHcCCChhHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSL-VDMYGKCGLVDESHRVFDKMLK--KNSVSSS--ALLQGYCQTGDFESVIRIF 75 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~A~~~~ 75 (337)
|+++|.+.+....+.. +++..+..+ .....+.|+++.|...|.++.+ |+..... .....+...|++++|...+
T Consensus 99 d~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 99 DYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4566776666655442 233333333 4555889999999999999844 3332222 3467889999999999999
Q ss_pred HHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCc-------hhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 76 REMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV-------IIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 76 ~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
+++.+ |+ ......+...+.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS 256 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 99998 54 456778889999999999999999999998764322 133334444445556677788888876
Q ss_pred ---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHH
Q 037592 146 ---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222 (337)
Q Consensus 146 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (337)
+.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+..++.+ +-|+..
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l 330 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLL 330 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--CCCHHH
Confidence 457788899999999999999999999999884 4444322 3344456699999999999997653 556778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh-cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 037592 223 YNCMVDLLGRAGLLEEAETLIENA-DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 281 (337)
+..+...+.+.|++++|.+.|++. ...|+...+..+...+.+.|+.++|.+++++...+
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 889999999999999999999984 67899999999999999999999999999998773
No 28
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=7.4e-15 Score=114.48 Aligned_cols=286 Identities=12% Similarity=0.094 Sum_probs=224.5
Q ss_pred HhcCChHHHHHHHHHcccCChhh---HHHHHHHHHcCCChhHHHHHHHHHhh-cCcc------cHHHHHHHHHhhchhhh
Q 037592 32 GKCGLVDESHRVFDKMLKKNSVS---SSALLQGYCQTGDFESVIRIFREMEE-IDLF------SFGIVLRACAGLAALRL 101 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~ 101 (337)
.-+++.++|++.|-+|.+-|+.+ .-+|.+.|-+.|..++|+++.+.+.+ ||.. +...|..-|...|-++.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 34578999999999997666555 45788999999999999999999988 6653 34556777889999999
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH--------HhHHHHHHHHHhCCCHhHHHHHHH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL--------ITWNSMISGFAQNGRGEEALRIFD 173 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~ 173 (337)
|+.+|..+.+.+. --......|+..|-...+|++|+++-+++.+.+. ..|.-|...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999988654 4466777899999999999999999887763322 245556666777899999999999
Q ss_pred HHHhcCCCCCHhHHHH-HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc
Q 037592 174 DMTEGGTKPDHVSFIG-VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD 251 (337)
Q Consensus 174 ~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 251 (337)
+..+. .|+.+--++ +.......|+++.|.+.++.+.+. +..--+.+...|..+|...|+.++...++.++ ...+.
T Consensus 205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99885 444444443 447788999999999999999654 33333677788999999999999999999874 55666
Q ss_pred hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH---cCChhhHHHHHHHHHHhCCccCCC
Q 037592 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA---VGRWNDAFKIRTLMKYSGVKKMPG 322 (337)
Q Consensus 252 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 322 (337)
...-..+...-....-.+.|...+.+-+...|+ ...+..++..... .|.+.+.+..++.|....++..|.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 666666666666777788899999888899999 6788888776543 456888889999998877766555
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=9.6e-16 Score=130.08 Aligned_cols=274 Identities=15% Similarity=0.095 Sum_probs=216.3
Q ss_pred CChHHHHHHHHHcccC--Chh-hHHHHHHHHHcCCChhHHHHHHHHHhh------cCcccHHHHHHHHHhhchhhhhHHH
Q 037592 35 GLVDESHRVFDKMLKK--NSV-SSSALLQGYCQTGDFESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGKEV 105 (337)
Q Consensus 35 ~~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~ 105 (337)
=+..+|...|..++.. |.. ....+..+|...+++++|.++|+.+.. .+...|++.+..+-+. -+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 3678899999996433 433 345677899999999999999999988 5667888887765322 22333
Q ss_pred H-HHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC
Q 037592 106 H-CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR---NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181 (337)
Q Consensus 106 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 181 (337)
+ +.+.+.. +..+.+|.++.++|.-+++.+.|++.|++..+. ...+|+.+..-+....++|+|...|+..+. +.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 3 3344443 367899999999999999999999999999854 457888888889999999999999999865 33
Q ss_pred CCH-hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHH
Q 037592 182 PDH-VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEV 257 (337)
Q Consensus 182 p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 257 (337)
|.. .+|..+...|.+.++++.|+-.|+.++ .+.| +......++..+.+.|+.++|++++++. ...| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 322 345556678999999999999999997 4455 4566677888999999999999999984 3333 3333334
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
-+..+...+++++|+..+++++++.|++...|..++..|.+.|+.+.|+.-|--+.+...+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 4566788999999999999999999999999999999999999999999999887775544
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.1e-15 Score=129.64 Aligned_cols=272 Identities=14% Similarity=0.035 Sum_probs=195.7
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C----ChhhHHHHHHHHHcCCChhHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K----NSVSSSALLQGYCQTGDFESVIRIFR 76 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 76 (337)
++|...|....+. +.-+..+...+..+|...+++++|.++|+.+.+ | +...|.+.+--+.+ +-++.++.
T Consensus 336 ~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 336 REALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 5677778874443 233446667778888888888888888888732 2 56677776654322 22333332
Q ss_pred H-Hhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhH
Q 037592 77 E-MEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152 (337)
Q Consensus 77 ~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 152 (337)
+ +.. ..+.+|..+..+|..+++.+.|++.|+++++..+ ....+|+.+..=+.....+|+|...|+.....|+..|
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 2 222 3456888888888888888888888888887654 4678888888888888888888888888887766655
Q ss_pred HH---HHHHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037592 153 NS---MISGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228 (337)
Q Consensus 153 ~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (337)
++ +...|.+.++++.|.-.|+++.+ +.| +.+....+...+.+.|+.|+|+++++++..-. +.|+......+.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCKYHRAS 565 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhHHHHHH
Confidence 54 56778888888888888888877 444 44445555667778888888888888886432 445556666677
Q ss_pred HHHhcCChHHHHHHHHHhc-CCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 229 LLGRAGLLEEAETLIENAD-CRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
.+...+++++|+..++++. ..|+ ...+..+...|.+.|+.+.|+.-|.-+.+++|.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 7888888888888888864 3444 444566667888888888888888888888887
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=8.5e-14 Score=119.68 Aligned_cols=278 Identities=12% Similarity=0.001 Sum_probs=203.4
Q ss_pred HhcCChHHHHHHHHHcccC--C-hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcc--cHHHHHHHHHhhchhhhhHH
Q 037592 32 GKCGLVDESHRVFDKMLKK--N-SVSSSALLQGYCQTGDFESVIRIFREMEE--IDLF--SFGIVLRACAGLAALRLGKE 104 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~l~~~~~~~~~~~~a~~ 104 (337)
...|+++.|.+.+.+..+. + ...+-....++.+.|+++.|.+++++..+ |+.. ........+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4689999999999887443 3 23344556778889999999999999877 6654 23335778889999999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC---CcHHhHH----HHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV---RNLITWN----SMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
.++.+.+..+ .+..++..+...+...|++++|.+.+..+.+ .+...+. .........+..++..+.+..+.+
T Consensus 175 ~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999875 5677888999999999999999999988872 3333332 111222333444444556666655
Q ss_pred cCCC---CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHh-cCCC
Q 037592 178 GGTK---PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH---YNCMVDLLGRAGLLEEAETLIENA-DCRH 250 (337)
Q Consensus 178 ~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 250 (337)
.... .+...+..+...+...|+.++|.+++++.++. .|+... ...........++.+.+.+.+++. ...|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 4221 36777888888999999999999999999764 344321 111222233457888888888763 4444
Q ss_pred ch---hHHHHHHHHHhcCCChhHHHHHHH--HHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 251 DS---SLWEVLLGACTTFRNAHVAERVAK--KIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 251 ~~---~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+. ....++...+.+.|++++|.+.|+ .+.+..|+ +..+..++..+.+.|+.++|.+++++-..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 445677888999999999999999 46668898 56677999999999999999999998644
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=7.5e-14 Score=120.03 Aligned_cols=272 Identities=11% Similarity=-0.008 Sum_probs=125.5
Q ss_pred chhhHHHHHHHHhcCCCCchHh-HHHHHHHHHhcCChHHHHHHHHHcc--cCCh--hhHHHHHHHHHcCCChhHHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVV-ESSLVDMYGKCGLVDESHRVFDKML--KKNS--VSSSALLQGYCQTGDFESVIRIFR 76 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 76 (337)
++.|.+.+....+. .|+... +-....+..+.|+++.|.+.+++.. .|+. ...-.....+...|+++.|...++
T Consensus 100 ~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 100 YAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred HHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555544443 233222 2223344555566666666665541 1222 122223455555566666666666
Q ss_pred HHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHH-HHHHHH---Hhc----CCHHHHHHHHhcCC
Q 037592 77 EMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES-ALVDLY---AKC----GCVDFAHQIFLQMP 145 (337)
Q Consensus 77 ~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~----g~~~~A~~~~~~~~ 145 (337)
.+.+ |+ ...+..+...+.+.|+++.|.+.+..+.+.+.. +...+. .-..++ ... ...+...+.++...
T Consensus 178 ~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 178 KLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 5555 32 234445555555666666666666665555432 222111 001111 111 11223333333333
Q ss_pred C---CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhH--H-HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC
Q 037592 146 V---RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS--F-IGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219 (337)
Q Consensus 146 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 219 (337)
. .+...+..++..+...|+.++|.+++++..+.. |+... + ..........++.+.+.+.++..++.. +-|
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p~~ 332 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--DDK 332 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--CCC
Confidence 1 245555555555666666666666666555532 22221 0 111111223345555555555554432 222
Q ss_pred H--HHHHHHHHHHHhcCChHHHHHHHHH---hcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 220 I--EHYNCMVDLLGRAGLLEEAETLIEN---ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 220 ~--~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
+ ....++...+.+.|++++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++...
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3444555555566666666666652 23455555555555556666666666666655543
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=7.1e-14 Score=109.09 Aligned_cols=276 Identities=10% Similarity=0.093 Sum_probs=215.7
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc-CCh------hhHHHHHHHHHcCCChhHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNS------VSSSALLQGYCQTGDFESVIR 73 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~g~~~~A~~ 73 (337)
+.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|..+.|+++...+.+ ||. .....|..-|...|-++.|.+
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3578999999999864 44667788899999999999999999998844 432 234567788999999999999
Q ss_pred HHHHHhh-cC--cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC----chhHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 037592 74 IFREMEE-ID--LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD----VIIESALVDLYAKCGCVDFAHQIFLQMPV 146 (337)
Q Consensus 74 ~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (337)
+|..+.+ |. ..+...|+..|-+..+|++|+++-+++.+.+..+. ...|.-|...+....++++|..++.+..+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 9999987 32 34678899999999999999999999999887654 34455667777778899999999998874
Q ss_pred C---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH
Q 037592 147 R---NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 147 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (337)
. .+.+--.+...+...|++++|.+.++...+.+...-..+...+..+|...|+.++....+.++.+. .++...-
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~ 285 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAE 285 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHH
Confidence 3 344555677889999999999999999999766655667788889999999999999999998654 4555555
Q ss_pred HHHHHHHHhcCChHHHHHH-HHHhcCCCchhHHHHHHHHHh---cCCChhHHHHHHHHHHh
Q 037592 224 NCMVDLLGRAGLLEEAETL-IENADCRHDSSLWEVLLGACT---TFRNAHVAERVAKKIME 280 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~ 280 (337)
..+.+......-.+.|... .+.+..+|+...+..++..-. .-|...+-...++.|..
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5555555555555666555 456889999999999997643 33445666666777664
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.3e-16 Score=130.42 Aligned_cols=254 Identities=15% Similarity=0.154 Sum_probs=107.9
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHc---c--cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHH
Q 037592 19 GNVVVESSLVDMYGKCGLVDESHRVFDKM---L--KKNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVL 90 (337)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 90 (337)
|+...+ .+...+.+.|++++|.++++.. . ..|...|..+...+...++++.|.+.++++.. .+...+..++
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~ 85 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333334 5688899999999999999653 2 22566677788888899999999999999988 2234566666
Q ss_pred HHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCcHHhHHHHHHHHHhCCCH
Q 037592 91 RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-----VRNLITWNSMISGFAQNGRG 165 (337)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~ 165 (337)
.. ...+++++|..++.+..+.. ++...+..++..+.+.++++++.++++++. +.+...|..+...+.+.|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 66 78999999999998876653 566777888899999999999999998854 34677888999999999999
Q ss_pred hHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037592 166 EEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244 (337)
Q Consensus 166 ~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 244 (337)
++|+..+++..+. .| +......++..+...|+.+++..+++...+.. +.++..+..+..+|...|+.++|...|+
T Consensus 163 ~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 163 DKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999985 45 46677788889999999999999998885543 5666788899999999999999999999
Q ss_pred Hh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 245 NA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 245 ~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
+. ...| |+.....+..++...|+.++|.++.+++.+
T Consensus 239 ~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 85 3344 677777888999999999999999988764
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=6.5e-13 Score=121.33 Aligned_cols=191 Identities=13% Similarity=0.062 Sum_probs=149.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCC-----CCCHhHHHHHHHHHh
Q 037592 125 VDLYAKCGCVDFAHQIFLQMPVR----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGT-----KPDHVSFIGVLSACS 195 (337)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~l~~~~~ 195 (337)
+-++...|++.++++.|+.+..+ ...+-..+..+|...+++++|..+|+++..... +++......|..++.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 34556667777777777777722 234556788999999999999999999976531 223333567889999
Q ss_pred hcCchhhHHHHHHHHHHhcC----------CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHH
Q 037592 196 HMGLIDRGRKHFASMTKEYR----------IKPK---IEHYNCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLG 260 (337)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 260 (337)
..+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.++++- .+-|......+..
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~ 458 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALAS 458 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999954211 0122 2445567788899999999999999862 3446777788889
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
.+...|.+..|+..++.+..+.|++..+....+.++...|+|++|..+.+...+.
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999888776553
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=1.1e-12 Score=111.50 Aligned_cols=318 Identities=10% Similarity=0.044 Sum_probs=201.9
Q ss_pred HHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc---cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c
Q 037592 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML---KKNSVSSSALLQGYCQTGDFESVIRIFREMEE--I 81 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 81 (337)
.+|.+.+.. .+-....|.....-+-..|+...|..++.++. ..+...|-.-+..-..+.++++|..+|.+... |
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 344444443 12233444444455555566666666666552 22445566666666666666666666666655 5
Q ss_pred CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CC-cHHhHHHHHHH
Q 037592 82 DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VR-NLITWNSMISG 158 (337)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~ 158 (337)
+...|..-+...--.+..++|.+++++.++.-+ .-...|-.+...+-+.++++.|...|..-. .| .+..|-.|...
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 555555555555555666666666666665421 234455555666666666666666665544 23 34455555555
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
=-+.|.+-.|..++++..-.+++ +...|...|..-.+.|+.+.|..++.+++++ ++.+...|..-|....+.++-..
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchH
Confidence 55666666666666666554332 5555666666666666666666666666553 34455566666666555555555
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
....+++... |+...-.+...+-...++++|.+.|.++...+|++..+|..+...+...|.-++-.+++..... ..
T Consensus 806 s~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~E 881 (913)
T KOG0495|consen 806 SIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AE 881 (913)
T ss_pred HHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cC
Confidence 5555555443 3333555566677788999999999999999999999999999999999999999999988776 56
Q ss_pred cCCCCcceecccccc
Q 037592 319 KMPGKSWIEANSKLN 333 (337)
Q Consensus 319 ~~~~~~~~~~~~~~~ 333 (337)
|..+..|..+.+.+.
T Consensus 882 P~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 882 PTHGELWQAVSKDIK 896 (913)
T ss_pred CCCCcHHHHHhhhHH
Confidence 778999988776553
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.4e-13 Score=111.09 Aligned_cols=294 Identities=12% Similarity=0.037 Sum_probs=202.8
Q ss_pred CCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccH---HHHHHH
Q 037592 16 GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSF---GIVLRA 92 (337)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~ 92 (337)
+...|...+-.....+-+.|..+.|++.|...+..-+-.|.+-+...--.-+.+.+..+.... |....| -.+..+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l--~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGL--PSDMHWMKKFFLKKA 236 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcC--cccchHHHHHHHHHH
Confidence 335565555555666777888888998888775533333333222211111222221111111 110111 123345
Q ss_pred HHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC------cHHh---------------
Q 037592 93 CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR------NLIT--------------- 151 (337)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~--------------- 151 (337)
+....+.+++..-.+.+...|++.+...-+....+.....++++|+.+|+++.+. |..+
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 5555566677777777777776444444444555566667777777777776522 2222
Q ss_pred ----------------HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC
Q 037592 152 ----------------WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215 (337)
Q Consensus 152 ----------------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (337)
...+.+-|...++.++|..+|++.++.+.+ ....|+.+..-|....+...|+.-++.+++-
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-- 393 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-- 393 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--
Confidence 233445566678899999999999985432 4456777778899999999999999999753
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHH
Q 037592 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293 (337)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 293 (337)
.+.|-..|..|+++|.-.+...-|+-.|++. ..+ .|...|.+|..+|.+.++.++|++.|.++......+...+..|+
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 2567899999999999999999999999985 344 47789999999999999999999999999986666688999999
Q ss_pred HHHHHcCChhhHHHHHHHHHH
Q 037592 294 NVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m~~ 314 (337)
..|-+.++.++|...|++..+
T Consensus 474 kLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999988776
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=4e-12 Score=102.25 Aligned_cols=285 Identities=13% Similarity=0.079 Sum_probs=219.7
Q ss_pred HHHHHHH--hcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhhc--Cc--ccHHHHHHHHHhh
Q 037592 26 SLVDMYG--KCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEEI--DL--FSFGIVLRACAGL 96 (337)
Q Consensus 26 ~l~~~~~--~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~l~~~~~~~ 96 (337)
.+..+.. -.|++..|++...+-.+. ....|-.-+.+..+.|+.+.+-.++.++.++ |. ...-+........
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 3344443 379999999999886333 3445666678888999999999999999982 33 3445556678889
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------cHHhHHHHHHHHHhCCCH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-----------NLITWNSMISGFAQNGRG 165 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~ 165 (337)
|+++.|..-..++.+.++ ..+.+......+|.+.|+|.....++.++.+. ...+|..+++-....+..
T Consensus 167 ~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999887 66788888999999999999999999988732 224688888877777777
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 166 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
+.-...|+..-.+ .+-+...-.+++.-+...|+.++|.++..+.++. +..|+. .. .-...+-++.+.-.+..++
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~-~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CR-LIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HH-HHhhcCCCCchHHHHHHHH
Confidence 7767777776544 3445566677788888999999999999999766 555551 11 2234456666665655554
Q ss_pred ----hcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccC
Q 037592 246 ----ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 246 ----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 320 (337)
.+..| ..+.+|...|.+.+.+.+|...|+.+++..|+ ...|..+..++.+.|+..+|.+++++....-.+|.
T Consensus 320 ~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 320 WLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 34444 66888889999999999999999999999999 79999999999999999999999998876555543
No 39
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.64 E-value=2.9e-13 Score=115.86 Aligned_cols=230 Identities=19% Similarity=0.188 Sum_probs=176.8
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHh-----hC-CCCc-hhHHHHHHHHHhcCCHHHHHHHHhcCC----------CC
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRR-----SG-CKDV-IIESALVDLYAKCGCVDFAHQIFLQMP----------VR 147 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~ 147 (337)
+...+...|...|+++.|..++++.++. |. .|.. ...+.+...|...+++++|..+|+++. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 5666888999999999999999988876 11 1333 233447788999999999999998886 12
Q ss_pred -cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-----CCC-CCH-hHHHHHHHHHhhcCchhhHHHHHHHHHHhcC--CC
Q 037592 148 -NLITWNSMISGFAQNGRGEEALRIFDDMTEG-----GTK-PDH-VSFIGVLSACSHMGLIDRGRKHFASMTKEYR--IK 217 (337)
Q Consensus 148 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 217 (337)
-..+++.|..+|.+.|++++|..++++..+- |.. |.. ..++.+...|+..+++++|..+++..++... ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2357888889999999999999988876542 222 222 2455667788899999999999988765432 22
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHHHh--------c-CCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHh---
Q 037592 218 PK----IEHYNCMVDLLGRAGLLEEAETLIENA--------D-CRH-DSSLWEVLLGACTTFRNAHVAERVAKKIME--- 280 (337)
Q Consensus 218 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 280 (337)
++ ..+++.|...|...|++++|++++++. + ..+ ....++.+...|.+.+++..|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 468899999999999999999999863 1 122 245677888899999999999999998876
Q ss_pred -cC---CCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 281 -LK---PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 281 -~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
.. |+...+|..|+.+|...|++++|.++.+....
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33 44456899999999999999999999988763
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=2e-13 Score=111.51 Aligned_cols=269 Identities=13% Similarity=0.066 Sum_probs=208.0
Q ss_pred HHHHhcCChHHHHHHHHHcccCChhh----HHHHHHH--HHcCCChhHHHHHHHHHhhcCcc---cHHHHHHHHHhhchh
Q 037592 29 DMYGKCGLVDESHRVFDKMLKKNSVS----SSALLQG--YCQTGDFESVIRIFREMEEIDLF---SFGIVLRACAGLAAL 99 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~ 99 (337)
.-|.++|+++.|+++++-..+.|..+ -+.|... +..-.++..|.++-+.....|.. +...-.......|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 45778999999999988775554332 2222222 22245677888888777663332 222223345568999
Q ss_pred hhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 037592 100 RLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMT 176 (337)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 176 (337)
++|.+.|++.+...... ......+.-.+-..|++++|++.|-++. ..+......+.+.|-...+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999998765422 3333345567888999999999998775 5677788888999999999999999998776
Q ss_pred hcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCchhHH
Q 037592 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSSLW 255 (337)
Q Consensus 177 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 255 (337)
.. ++.|....+-+...|-+.|+-..|.+.+-.-.+ -++.+..+..-|...|....=+++|+.+|++. -+.|+..-|
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 54 455677888888999999999999988766533 45778888888899999999999999999985 478999999
Q ss_pred HHHHHH-HhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 256 EVLLGA-CTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 256 ~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
..++.. +.+.|+++.|..+|+...+..|.+..+...|++.+...|-
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 998854 6789999999999999999999999999999998887774
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=6.2e-13 Score=109.41 Aligned_cols=213 Identities=16% Similarity=0.115 Sum_probs=166.9
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHH
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIF 172 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (337)
.|+.-.+..-++..++..+. +...|..+..+|....+.++....|++.. +.++.+|..-.+.+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 45666677777777766543 33336777788888889888888888877 446778888888888889999999999
Q ss_pred HHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCC
Q 037592 173 DDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRH 250 (337)
Q Consensus 173 ~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~ 250 (337)
++.+.. .| +...|..+..+..+.+.+++++..|++..+ .++.-+.+|+...+.+...+++++|.+.|+. +...|
T Consensus 418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 998874 44 445666666677789999999999999965 4566788999999999999999999999986 33333
Q ss_pred c---------hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 251 D---------SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 251 ~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+ +..-..++. +.=.+++..|+.+++++++++|.+..+|..|+..-.+.|+.++|+++|++-..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 111122222 22338999999999999999999999999999999999999999999998543
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.7e-12 Score=106.18 Aligned_cols=228 Identities=11% Similarity=0.079 Sum_probs=117.8
Q ss_pred HHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC------ChhhHHHHHHHHHcCCChhHHHHHHHHHh---
Q 037592 9 HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK------NSVSSSALLQGYCQTGDFESVIRIFREME--- 79 (337)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 79 (337)
.+.....|++.+...-+....+.-...++++|+.+|+++.+. |..+|..++.. ++.+- .+.++.+-.
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s--kLs~LA~~v~~i 325 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS--KLSYLAQNVSNI 325 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH--HHHHHHHHHHHh
Confidence 333444444444443343344444555666666666665332 33444444422 22111 111111111
Q ss_pred -hcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHH
Q 037592 80 -EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSM 155 (337)
Q Consensus 80 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 155 (337)
+-.+.|..++.+-|+-.++.++|..+|++.++.++ .....|+.+.+-|....+...|++.++... +.|-..|-.|
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGL 404 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGL 404 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhh
Confidence 12334455555555555666666666666666554 445556655666666666666666666554 3344556666
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
.++|.-.+.+.=|+-+|++..+. +| |...|.++..+|.+.++.++|++.|.+++.- ...+...+..|.+.|-+.+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSALVRLAKLYEELK 480 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHH
Confidence 66666666666666666665553 33 4445555666666666666666666665432 2334455556666666666
Q ss_pred ChHHHHHHHHH
Q 037592 235 LLEEAETLIEN 245 (337)
Q Consensus 235 ~~~~A~~~~~~ 245 (337)
+..+|...|++
T Consensus 481 d~~eAa~~yek 491 (559)
T KOG1155|consen 481 DLNEAAQYYEK 491 (559)
T ss_pred hHHHHHHHHHH
Confidence 66666655554
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.2e-12 Score=115.92 Aligned_cols=322 Identities=12% Similarity=0.065 Sum_probs=152.5
Q ss_pred chhhHHHHHHHHhcCCC--CchHhHHHHHHHHHhcCChHHHHHHHHHcccC--C--hhhHHHHHHHHHcCCChhHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLC--GNVVVESSLVDMYGKCGLVDESHRVFDKMLKK--N--SVSSSALLQGYCQTGDFESVIRIF 75 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~g~~~~A~~~~ 75 (337)
++.+.++..-+...... .-...|-.+..+|...|++++|...|-+...- + +..+.-+...+++.|+++.+...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 44555555555554311 11233555667777777777777766655322 2 223444566666677777777666
Q ss_pred HHHhh--cCc-ccHHHHHHHHHhhc----hhhhhHHHHHHHHHhh-----------------------------------
Q 037592 76 REMEE--IDL-FSFGIVLRACAGLA----ALRLGKEVHCQYIRRS----------------------------------- 113 (337)
Q Consensus 76 ~~~~~--~~~-~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~----------------------------------- 113 (337)
++..+ ||. .+...+...|...+ ..+.|..++.+.++.-
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILES 445 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 66665 332 23334444443332 2344444444444332
Q ss_pred --CCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC-------CCcH------HhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 114 --GCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-------VRNL------ITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 114 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
..+.+...|.+...+...|.+.+|...|.+.. .+|. .+-..+...+-..++++.|.+.|..+.+.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22334444444444444444444444444433 0111 11112223333333444444444444332
Q ss_pred CCCCCH-hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH----hcCCCchh
Q 037592 179 GTKPDH-VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN----ADCRHDSS 253 (337)
Q Consensus 179 ~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~ 253 (337)
. |+- ..|.-++......+...+|...++.++... ..++..+..++..+.+...+..|.+-|+. ....+|+.
T Consensus 526 h--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 526 H--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred C--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 1 111 111112111112234445555555544322 23333444444455555555555543332 22234444
Q ss_pred HHHHHHHHHh------------cCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCC
Q 037592 254 LWEVLLGACT------------TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMP 321 (337)
Q Consensus 254 ~~~~l~~~~~------------~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 321 (337)
+.-+|.+.|. ..+..++|+++|.+++..+|.+..+-+-++.+++..|++.+|..+|.+.++..-. .
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~--~ 679 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD--F 679 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh--C
Confidence 4444444332 2234566777777777777776666666677777777777777777777765542 2
Q ss_pred CCcceecc
Q 037592 322 GKSWIEAN 329 (337)
Q Consensus 322 ~~~~~~~~ 329 (337)
...|+.++
T Consensus 680 ~dv~lNla 687 (1018)
T KOG2002|consen 680 EDVWLNLA 687 (1018)
T ss_pred CceeeeHH
Confidence 33455544
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=1.3e-12 Score=105.11 Aligned_cols=273 Identities=14% Similarity=0.039 Sum_probs=178.0
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC----ChhhHHHHHHHHHcCCChhHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK----NSVSSSALLQGYCQTGDFESVIRIFR 76 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 76 (337)
|+++|+++...-.+.+ +.....|..-+.+--+.|+.+.+-..+.+.-++ +....-+........|+++.|..-+.
T Consensus 99 ~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 99 DFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred cHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 4566666666655554 222333444556666777777777777777333 34445556667777777777777777
Q ss_pred HHhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCc-------hhHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 037592 77 EMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV-------IIESALVDLYAKCGCVDFAHQIFLQMP- 145 (337)
Q Consensus 77 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~- 145 (337)
++.+ .+........++|.+.|++.....+..++.+.+.-.+. .+|..+++=....+..+.-...+++.+
T Consensus 178 ~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr 257 (400)
T COG3071 178 QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR 257 (400)
T ss_pred HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH
Confidence 7776 33445666677777778888777777777777664332 344445544444455555555666665
Q ss_pred --CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH
Q 037592 146 --VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 146 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (337)
+.++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ...-.+.+.++...-++..+.-++.++.. +..+
T Consensus 258 ~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~ 331 (400)
T COG3071 258 KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPED--PLLL 331 (400)
T ss_pred HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCC--hhHH
Confidence 345666667777777777888887777777776665551 12224456666666666666665654333 3567
Q ss_pred HHHHHHHHhcCChHHHHHHHHH-hcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 224 NCMVDLLGRAGLLEEAETLIEN-ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
.+|...|.+.+.|.+|...|+. +...|+..+|+.+..++.+.|+...|.+..++...
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777777778888777775 45677777777777777778888777777777765
No 45
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.62 E-value=4.4e-12 Score=112.48 Aligned_cols=325 Identities=16% Similarity=0.113 Sum_probs=214.4
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCC------hhhHHHHHHHHHcCCChhHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN------SVSSSALLQGYCQTGDFESVIRIFR 76 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 76 (337)
..+.+++...-..+ +-++.+.+.|...|.-.|+++.+..+...++..+ ..+|..+..+|...|++++|..+|.
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34555555555443 4466677777777778888888887777764432 3457777888888888888888888
Q ss_pred HHhh--cCccc--HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC----CHHHHHHHHhcCCC--
Q 037592 77 EMEE--IDLFS--FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG----CVDFAHQIFLQMPV-- 146 (337)
Q Consensus 77 ~~~~--~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~-- 146 (337)
+..+ +|..+ +.-+...+...|+.+.+...|+...+..+ .+..+...|...|...+ ..++|..++.+...
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 7777 44433 34466777788888888888888877654 55666777777776665 45666666666653
Q ss_pred -CcHHhHHHHHHHHHhCCCHhHHHHHHHHHH----hcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC--CCC-
Q 037592 147 -RNLITWNSMISGFAQNGRGEEALRIFDDMT----EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR--IKP- 218 (337)
Q Consensus 147 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~- 218 (337)
.|...|-.+...+...+-+ .++.+|..+. ..+..+.....|.+...+...|+++.|...|..+..... ..+
T Consensus 411 ~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 3556676666666554433 3366665543 334446667777787777888888888888887743310 112
Q ss_pred -----CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCchhH-HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHH
Q 037592 219 -----KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSSL-WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVL 291 (337)
Q Consensus 219 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 291 (337)
+..+-..+...+-..++.+.|.+.|..+ ...|.-.. |-.+.......++..+|...++.+...+..++..+..
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 2223344556666677888888888775 34444322 2223323345567788888888888877777888888
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceeccc
Q 037592 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330 (337)
Q Consensus 292 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 330 (337)
++..+.+...|..|..-|+.+...-...+..++.|.++|
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 888888888888888888777766555556666666665
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=6e-13 Score=105.86 Aligned_cols=198 Identities=13% Similarity=0.025 Sum_probs=155.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 037592 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193 (337)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 193 (337)
....+..+...+...|++++|...+++.. +.+...+..+...|...|++++|.+.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 35666777888888888888888888765 23456777888888889999999999988887533 345566677778
Q ss_pred HhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHH
Q 037592 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 271 (337)
+...|++++|.+.++.++.....+.....+..+..++...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88889999999999988653222334566777888899999999999999874 3333 455677788889999999999
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 272 ERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
...++++.+..|+++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999998888877788888888999999999999988877653
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.6e-11 Score=100.91 Aligned_cols=317 Identities=9% Similarity=0.074 Sum_probs=212.1
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc--ccCChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
+.-|.++|+.-.+- .|+...|.+.|..=.+.+.++.|..++++. .+|++.+|--...-=.+.|+...|..+|+.+.
T Consensus 157 i~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 157 IAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred cHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34566777766654 677778888887777777788888888775 56777777777777777777777777777776
Q ss_pred h--cCc----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC-chhHHHHHHHHHhcCCHHHHHHHH---hcCC----
Q 037592 80 E--IDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCGCVDFAHQIF---LQMP---- 145 (337)
Q Consensus 80 ~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~---~~~~---- 145 (337)
+ .|. ..+.+....-.+...++.|..+|+-++..-+... ...|..+...--+-|+........ +++.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 6 222 2333333333455667777777777776533211 344444444444455544333322 2222
Q ss_pred ----CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh-------HHHHHHHHH---hhcCchhhHHHHHHHHH
Q 037592 146 ----VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV-------SFIGVLSAC---SHMGLIDRGRKHFASMT 211 (337)
Q Consensus 146 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~~~~~~ 211 (337)
+-|-.+|.-.+..-...|+.+...++|++.... ++|-.. .|..+=.++ ....+.+.+.++|+..+
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 224567777777777789999999999998876 555321 122111122 24678888888888886
Q ss_pred HhcCCCCCHHHHHHHH----HHHHhcCChHHHHHHHHH-hcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc
Q 037592 212 KEYRIKPKIEHYNCMV----DLLGRAGLLEEAETLIEN-ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 286 (337)
+ -++....|+..+- +...++.++..|.+++.. +|..|-..++...|..-.+.++++....+|++.++..|.+.
T Consensus 394 ~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c 471 (677)
T KOG1915|consen 394 D--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENC 471 (677)
T ss_pred h--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence 4 3444445554443 334467888889988875 68888888888888888888899999999999999888888
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCC
Q 037592 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGK 323 (337)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 323 (337)
.+|...+..-...|+++.|..+|+-.........|..
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 8888888888888888888888887776554444433
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.7e-12 Score=108.59 Aligned_cols=260 Identities=12% Similarity=0.012 Sum_probs=212.1
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
++........-+...+++.+..++.+...+ ++...+..-|.++...|+..+-..+-.++++.-| ....+|.++.-.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHH
Confidence 334445555667788999999999999998 5555666777788899999888888888888755 678999999999
Q ss_pred HHhcCCHHHHHHHHhcCCCC---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 128 YAKCGCVDFAHQIFLQMPVR---NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
|...|+.++|++.|.+...- -...|-.+..+|+-.|..++|+..+..+-+. ++-...-+.-+.--|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 99999999999999988743 3578999999999999999999999887764 2112222333445678899999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc--------CCC-chhHHHHHHHHHhcCCChhHHHHHH
Q 037592 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD--------CRH-DSSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
++|..+.. -.|.|+.+.+.+.-.....+.+.+|..+|+..- ..+ -..+++.|..+|.+.+.+++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999863 224567888888888888999999999998631 111 3345778889999999999999999
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
++++.+.|.+..++..++..|...|+++.|.+.|.+..-
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999987654
No 49
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.8e-11 Score=98.41 Aligned_cols=238 Identities=15% Similarity=0.134 Sum_probs=179.5
Q ss_pred HHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC----CCcH
Q 037592 74 IFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP----VRNL 149 (337)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~ 149 (337)
++-+..-.+..++.++|.+.++-...+.|.++|++......+.+..+||.+|.+-.-... .+++.+|. .||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 333333356678999999999999999999999999988888999999999877554433 44444444 7999
Q ss_pred HhHHHHHHHHHhCCCHhHH----HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchh-hHHHHHHHHHHhc---CCC----
Q 037592 150 ITWNSMISGFAQNGRGEEA----LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID-RGRKHFASMTKEY---RIK---- 217 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~---~~~---- 217 (337)
.|+|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++.. .+..++..+...- .++
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 9999999999999987654 567888999999999999999998888877654 4555555553321 122
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhc-------CCCc---hhHHHHHHHHHhcCCChhHHHHHHHHHHh--cCCCc
Q 037592 218 PKIEHYNCMVDLLGRAGLLEEAETLIENAD-------CRHD---SSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDC 285 (337)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~ 285 (337)
.+...|...+..|.+..+.+-|.++-.-+. +.|+ ...|..+....++....+.-...|+.+.- ..|+
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~- 432 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH- 432 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC-
Confidence 244566677788888888888888765321 2222 22355566777788888888888888876 5677
Q ss_pred cchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 286 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+.+-..++++....|+++-.-+++..++..|
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 6777888889999999999999999988877
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=3.8e-12 Score=113.65 Aligned_cols=256 Identities=13% Similarity=0.001 Sum_probs=181.6
Q ss_pred ChhhHHHHHHHHHc-----CCChhHHHHHHHHHhh--cCcc-cHHHHHHHHHh---------hchhhhhHHHHHHHHHhh
Q 037592 51 NSVSSSALLQGYCQ-----TGDFESVIRIFREMEE--IDLF-SFGIVLRACAG---------LAALRLGKEVHCQYIRRS 113 (337)
Q Consensus 51 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~ 113 (337)
+...|...+.+... .+.+++|+.+|++..+ |+.. .|..+..++.. .+++++|...++++++..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 44555555554321 2446799999999998 5443 44445444432 345789999999999987
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh-HHHH
Q 037592 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VR-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV-SFIG 189 (337)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ 189 (337)
+ .+...+..+...+...|++++|...|++.. .| +...+..+...+...|++++|...+++..+. .|+.. .+..
T Consensus 335 P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~ 411 (553)
T PRK12370 335 H-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGIT 411 (553)
T ss_pred C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHH
Confidence 6 677888889999999999999999999977 34 5668888999999999999999999999885 44432 2333
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCCchhH-HHHHHHHHhcCC
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENAD-CRHDSSL-WEVLLGACTTFR 266 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~g 266 (337)
++..+...|++++|...+++++... +| ++..+..+..++...|++++|...++++. ..|+... .+.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 4445666899999999999986542 34 45567778889999999999999998853 3444333 444555677777
Q ss_pred ChhHHHHHHHHHHh---cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 267 NAHVAERVAKKIME---LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 267 ~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+.|...++.+.+ ..|.++.. +...|.-.|+.+.+... +++.+.|.
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 477777777766 34443222 44555666776666666 77766543
No 51
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=7.2e-11 Score=100.83 Aligned_cols=316 Identities=11% Similarity=0.023 Sum_probs=245.6
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc----------C--------------Ch-----
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK----------K--------------NS----- 52 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~--------------~~----- 52 (337)
|+.|.++++...+. ++-+..+|.+-...=-.+|+.+...++.++-+. + .+
T Consensus 422 YenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA 500 (913)
T KOG0495|consen 422 YENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA 500 (913)
T ss_pred HHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence 45678888888764 566778888877777788888888777766410 0 12
Q ss_pred ----------------hhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhh
Q 037592 53 ----------------VSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113 (337)
Q Consensus 53 ----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 113 (337)
.+|..-...|.+.+.++-|..+|....+ .+...|......--..|..++...++++++...
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 2344445556667777778888887777 344456666666667788889999999999875
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHH
Q 037592 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190 (337)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 190 (337)
+ .....|-....-+...|++..|+.++.+.. +.+...|.+-+..-..+.+++.|..+|.+... ..|+...|.--
T Consensus 581 p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs 657 (913)
T KOG0495|consen 581 P-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKS 657 (913)
T ss_pred C-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHH
Confidence 4 556667777778888999999999998876 34667898899999999999999999998877 55677777666
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCC-chhHHHHHHHHHhcCCCh
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRH-DSSLWEVLLGACTTFRNA 268 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~ 268 (337)
+...--.++.++|.+++++.++.+ +.-...|..+.+.+-+.++++.|.+.|.. ....| ....|-.+...--+.|++
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch
Confidence 666666799999999999998743 44467888999999999999999999875 44444 456788888888889999
Q ss_pred hHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcc
Q 037592 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 325 (337)
-.|..++++..-.+|++...|...+.+-.+.|..+.|..+..+..+.... .+.-|
T Consensus 736 ~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~--sg~LW 790 (913)
T KOG0495|consen 736 VRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS--SGLLW 790 (913)
T ss_pred hhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cchhH
Confidence 99999999999999999999999999999999999999888777664432 44444
No 52
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=3.1e-11 Score=106.40 Aligned_cols=295 Identities=14% Similarity=0.105 Sum_probs=220.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHH
Q 037592 21 VVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACA 94 (337)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 94 (337)
....-.....+...|++++|.+++.++++. +...|.+|...|-..|+.++++..+-.+.. .|..-|..+.....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 333444445555569999999999999554 577899999999999999999988876655 45567888888899
Q ss_pred hhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH--------HhHHHHHHHHHhCCCHh
Q 037592 95 GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL--------ITWNSMISGFAQNGRGE 166 (337)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~ 166 (337)
+.|++++|.-.|.++++..+ ++...+-.-...|-+.|+...|...|.++.+.++ ..-...+..|...++.+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999987 6666666778899999999999999998873222 22334567778888889
Q ss_pred HHHHHHHHHHhcC-CCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh--------------------------cCCCCC
Q 037592 167 EALRIFDDMTEGG-TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE--------------------------YRIKPK 219 (337)
Q Consensus 167 ~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~~~~ 219 (337)
.|.+.++.....+ -..+...++.++..+.+...++.|.......... .+..++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 9999999887632 2335567788888889999999998887776430 012233
Q ss_pred HHHHHHHHHHHH--hcCChHHHHHHHHHhc---CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc-cchHHHHH
Q 037592 220 IEHYNCMVDLLG--RAGLLEEAETLIENAD---CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC-HLSYVLLD 293 (337)
Q Consensus 220 ~~~~~~l~~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~ 293 (337)
..++. ++-++. +.++..+++.-+-... ...+...|.-+..++...|++.+|+.++..+....+.. ...|..++
T Consensus 378 l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 33311 222333 3444555554443222 23355567778899999999999999999999866552 56899999
Q ss_pred HHHHHcCChhhHHHHHHHHHHhCC
Q 037592 294 NVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.+|...|..++|.+.|++......
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p 480 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAP 480 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC
Confidence 999999999999999999887543
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=7.4e-12 Score=99.55 Aligned_cols=156 Identities=13% Similarity=0.067 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 037592 53 VSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129 (337)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (337)
..+..+...+...|++++|.+.++++.+ |+ ...+..+...+...|++++|...+++.++..+ .+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 3445555555555566655555555544 22 22333444444445555555555555544432 23334444444444
Q ss_pred hcCCHHHHHHHHhcCCC-----CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 130 KCGCVDFAHQIFLQMPV-----RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 130 ~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
..|++++|.+.+++... .....+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444331 0122333334444444444444444444443211 12223333334444444444444
Q ss_pred HHHHHH
Q 037592 205 KHFASM 210 (337)
Q Consensus 205 ~~~~~~ 210 (337)
..++++
T Consensus 190 ~~~~~~ 195 (234)
T TIGR02521 190 AYLERY 195 (234)
T ss_pred HHHHHH
Confidence 444444
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.53 E-value=3.4e-12 Score=113.94 Aligned_cols=212 Identities=11% Similarity=-0.038 Sum_probs=164.2
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh---------cCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCC
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK---------CGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGR 164 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 164 (337)
+++++|...+++.++..+ .+...|..+..+|.. .+++++|...+++.. +.+..++..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 457899999999998765 456667666665542 345889999999887 3367788888899999999
Q ss_pred HhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 037592 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLI 243 (337)
Q Consensus 165 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 243 (337)
+++|...|+++.+.++. +...+..+...+...|++++|...++++++. .|+ ...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999986422 4556777788899999999999999999754 444 333344555677789999999999
Q ss_pred HHhc-C-CCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 244 ENAD-C-RHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 244 ~~~~-~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
++.- . .|+ +..+..+..++...|++++|...++++....|.+......+...|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8753 2 343 3446667778889999999999999988888887777777777888877 4888888887654
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=2.4e-12 Score=101.00 Aligned_cols=224 Identities=9% Similarity=-0.043 Sum_probs=147.9
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHh-HHHHHHHHHhCC
Q 037592 87 GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLIT-WNSMISGFAQNG 163 (337)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~l~~~~~~~~ 163 (337)
+.+..+|.+.|-+.+|...++..++. .|-+.||-.|..+|.+..+...|+.++.+-. -|..+| ..-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45666777777777777777666665 2445566666777777777777777776665 233333 334556666667
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 243 (337)
+.++|.++|+...+.. +.+.....++...|.-.++.+-|+.+|++++.- |+ .++..|+.+.-+|.-.++++-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777777777776642 234455555666666677777777777777544 43 45567777777777777777777777
Q ss_pred HHhc---CCC--chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 244 ENAD---CRH--DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 244 ~~~~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
++.- ..| -...|..+.......|++..|.+.|+-++..+|++..+++.|.-.-.+.|+.++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 6531 112 23446666667777777777777777777777777777777777777778888887777765553
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.4e-10 Score=95.27 Aligned_cols=182 Identities=13% Similarity=0.078 Sum_probs=139.2
Q ss_pred hcCCHHHHHHHHhcCCCCcHHhHHHH---HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHH
Q 037592 130 KCGCVDFAHQIFLQMPVRNLITWNSM---ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206 (337)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 206 (337)
..|++++|.+.+++....|...-.+| .-.+-..|+.++|++.|-++... +.-+......+...|-...+...|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 35778888888888886665443333 34567789999999999877653 233555666777888888889999998
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-Hhc-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE-NAD-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+..+. . -++.|+.+...|...|-+.|+-.+|.+..- .-. .+-+..+..-|..-|....-+++++.+|+++.-+.|+
T Consensus 581 ~~q~~-s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQAN-S-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhc-c-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 87763 2 566778999999999999999999998754 333 3346667777777788888899999999999999999
Q ss_pred ccchHHHH-HHHHHHcCChhhHHHHHHHHHHh
Q 037592 285 CHLSYVLL-DNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 285 ~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
. .-|..+ ..++.+.|++.+|..+|+..-+.
T Consensus 659 ~-~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 Q-SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred H-HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4 555555 55677889999999999987654
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7.5e-11 Score=99.04 Aligned_cols=273 Identities=13% Similarity=0.015 Sum_probs=214.6
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHH
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLR 91 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~ 91 (337)
.-+........+-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+=.++.+ |+ ..+|.++.-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 345555666677788889999999999998544 556677778889999998888888888888 54 458999988
Q ss_pred HHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHH
Q 037592 92 ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 168 (337)
-|.-.|...+|+++|.+...... .-...|-.+...|.-.|..++|...+.... +.....+.-+..-|.+.++.+-|
T Consensus 321 YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 88888999999999999887654 446788899999999999999998876654 22333344466678889999999
Q ss_pred HHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 169 LRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR-----IKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 169 ~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
.+.|.+... +.| |+...+-+.......+.+.+|..+|+..+..-. ......+++.|+.+|.+.+.+++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999998877 444 555666666666678999999999998763211 112456789999999999999999999
Q ss_pred HHHh--cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHH
Q 037592 243 IENA--DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293 (337)
Q Consensus 243 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 293 (337)
+++. -.+.+..++.++.-.|...|+++.|++.|.+++.+.|++..+-..|.
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9973 24457888899999999999999999999999999999744433333
No 58
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2.5e-10 Score=93.05 Aligned_cols=297 Identities=12% Similarity=0.068 Sum_probs=183.1
Q ss_pred CCCchHhHHHHHHHHHhcCChHHHHHHHHHcc----cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh----cCcccHHH
Q 037592 17 LCGNVVVESSLVDMYGKCGLVDESHRVFDKML----KKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGI 88 (337)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 88 (337)
.+.+..+|.++|.++|+-...+.|.+++++.. +.+..+||.+|.+-.- ....+++.+|.+ ||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHH
Confidence 35577899999999999999999999998873 3377788888865332 223677777776 99999999
Q ss_pred HHHHHHhhchhhh----hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH-HHHHHhcCC------------CCcHHh
Q 037592 89 VLRACAGLAALRL----GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF-AHQIFLQMP------------VRNLIT 151 (337)
Q Consensus 89 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~------------~~~~~~ 151 (337)
++.+..+.|+++. |.+++.+|.+.|+.|+..+|..++..+.+.++..+ |..++.++. +.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999997765 45678888999999999999999998888887755 333333322 113344
Q ss_pred HHHHHHHHHhCCCHhHHHHH------------------------------------------HHHHHhcCCCCCHhHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRI------------------------------------------FDDMTEGGTKPDHVSFIG 189 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~------------------------------------------~~~m~~~~~~p~~~~~~~ 189 (337)
|...+..|....+.+-|.++ |+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 44455555555555544443 333333323344455555
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-Ch--------HH-----HHHHHHH-------h-c
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG-LL--------EE-----AETLIEN-------A-D 247 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~~~-------~-~ 247 (337)
++.+..-.|.++-.-++|..+ ...|...+......+...+++.+ +. .. |..+++. + .
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~-~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDS-KEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHH-HHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 555555555555555555555 33343333333333333333332 11 00 0111110 1 1
Q ss_pred CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh---cCCCcc--chHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 248 CRHDSSLWEVLLGACTTFRNAHVAERVAKKIME---LKPDCH--LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
..-.+...+.+...+.+.|..++|.+++.-..+ ..|..+ .+...+++.-...+..-.|..+++-|...+..
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 222334455556667788888888888887754 234422 23335555666667888888888888766654
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.1e-10 Score=92.97 Aligned_cols=266 Identities=12% Similarity=-0.012 Sum_probs=133.0
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhh---HHHHHHHHHcCCChhHHHHHHHHHhhcC---cccHHHHHH
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVS---SSALLQGYCQTGDFESVIRIFREMEEID---LFSFGIVLR 91 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~ 91 (337)
+-|+.....+...+...|+.++|+..|++....|+.+ .......+.+.|+.++...+...+...+ ...|..-+.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 3344555556666666666666666665553222221 1222233345555555555555544421 222333333
Q ss_pred HHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--C-CcHHhHHHHHHHHHhCCCHhHH
Q 037592 92 ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--V-RNLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a 168 (337)
.....+++..|..+-++.++... .+...+-.-...+...|+.++|.-.|+... . -+...|.-|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 33445555555555555555433 333444434445555666666666665544 2 2455666666666666666666
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHH-HHHh-hcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVL-SACS-HMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
.-.-+...+. ++.+..+...+. ..|. ...--++|.++++..+ .+.|+ ....+.+...+..-|..+.+..++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 5554443332 222333333331 2222 2223355555555554 22333 34444555555566666666666655
Q ss_pred -hcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 246 -ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 246 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
+...||....+.|...+...+.+++|...|..+++++|++..+
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 3455566556666666666666666666666666666665433
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.7e-11 Score=96.21 Aligned_cols=227 Identities=12% Similarity=0.047 Sum_probs=194.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 037592 56 SALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133 (337)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (337)
+.+..+|.+.|.+.+|.+.++...+ |.+.||..|-.+|.+..++..|+.++.+-++.-+ -++.....+.+.+...++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHHHh
Confidence 5688999999999999999998887 8889999999999999999999999999887632 455555668889999999
Q ss_pred HHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 134 VDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 134 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
.++|.++++...+ .++.+...+...|.-.++++-|+.+|+++++.|+. +...|..+.-+|.-.+++|-++.-|.++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 9999999998873 35666777778899999999999999999999986 7778888888888999999999999998
Q ss_pred HHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHh--cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 211 TKEYRIKPK--IEHYNCMVDLLGRAGLLEEAETLIENA--DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 211 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
+.. -..|+ ..+|..+.......|++..|.+.|+-. ....+...++.|.-.-.+.|+++.|..+++.+....|+-
T Consensus 385 lst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 385 LST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred Hhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 654 22343 568999999999999999999999963 344567789999988999999999999999999999884
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.47 E-value=2.6e-11 Score=99.53 Aligned_cols=216 Identities=10% Similarity=-0.058 Sum_probs=142.9
Q ss_pred HHcCCChhHHHHHHHHHhh---cC----cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 037592 62 YCQTGDFESVIRIFREMEE---ID----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134 (337)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (337)
....+..+.++.-+.++.. .+ ...|..+...+...|+.++|...|++.++..+ .+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCH
Confidence 3344667778888877775 11 23466777778888888888888888888765 5678888888888888888
Q ss_pred HHHHHHHhcCC--CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 135 DFAHQIFLQMP--VR-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 135 ~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
++|...|++.. .| +..+|..+..++...|++++|.+.|++..+. .|+..........+...++.++|...+....
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 88888888876 33 4567777888888888888888888888774 3443322222223345677888888886654
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHH--HHHHHH-hcCC-----CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCC
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEA--ETLIEN-ADCR-----HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~-~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 283 (337)
.. .+++...+ .+ .....|+...+ .+.+.+ .... .....|..+...+.+.|++++|+..|+++.+.+|
T Consensus 193 ~~--~~~~~~~~-~~--~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EK--LDKEQWGW-NI--VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hh--CCccccHH-HH--HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 32 23332221 22 23334554433 222221 1111 1234677777888888888888888888888886
Q ss_pred Cc
Q 037592 284 DC 285 (337)
Q Consensus 284 ~~ 285 (337)
.+
T Consensus 268 ~~ 269 (296)
T PRK11189 268 YN 269 (296)
T ss_pred ch
Confidence 43
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.44 E-value=8.6e-11 Score=100.90 Aligned_cols=223 Identities=14% Similarity=0.109 Sum_probs=148.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh----------cCcc-cHHHHHHHHHhhchhhhhHHHHHHHHHhh-----CC--CCch
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE----------IDLF-SFGIVLRACAGLAALRLGKEVHCQYIRRS-----GC--KDVI 119 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~--~~~~ 119 (337)
+...|...|+++.|+.++++..+ |... ..+.+...|...+++++|..+|++++..- .. .-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 55555555555555555555544 1111 12234455666666666666666665531 11 1245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCC----------CCcH-HhHHHHHHHHHhCCCHhHHHHHHHHHHhc---CCCCCH-
Q 037592 120 IESALVDLYAKCGCVDFAHQIFLQMP----------VRNL-ITWNSMISGFAQNGRGEEALRIFDDMTEG---GTKPDH- 184 (337)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~- 184 (337)
+++.|..+|.+.|++++|...+++.. .+.+ ..++.++..+...+++++|..++++..+. -+.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 66667777888888877776666554 1222 24566777888889999999888876542 122222
Q ss_pred ---hHHHHHHHHHhhcCchhhHHHHHHHHHHhc----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-------c-
Q 037592 185 ---VSFIGVLSACSHMGLIDRGRKHFASMTKEY----R-IKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-------D- 247 (337)
Q Consensus 185 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~- 247 (337)
.+++.+...|...|++++|.++++.++... | ..+ ....++.|...|.+.+++.+|.++|.+. |
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 467888889999999999999999887643 1 122 2456788888999999999999988762 2
Q ss_pred CCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 248 CRHD-SSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 248 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
..|+ ..+|..|...|...|+++.|+++...+..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2233 35688899999999999999999988874
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=5.3e-13 Score=77.81 Aligned_cols=50 Identities=32% Similarity=0.688 Sum_probs=42.9
Q ss_pred CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh
Q 037592 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196 (337)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 196 (337)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.43 E-value=2e-10 Score=94.37 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=107.1
Q ss_pred hhhhhHHHHHHHHHhhC---CCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHH
Q 037592 98 ALRLGKEVHCQYIRRSG---CKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRI 171 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (337)
..+.++.-+.+++.... ......|..+...|.+.|++++|...|++.. +.+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44445555555554321 1113445556666666666666666666554 23455666666666666666666666
Q ss_pred HHHHHhcCCCCC-HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc--C
Q 037592 172 FDDMTEGGTKPD-HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD--C 248 (337)
Q Consensus 172 ~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 248 (337)
|++..+. .|+ ..++..+..++...|++++|.+.++..++. .|+..........+...++.++|...|++.- .
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 6666653 332 344455555566666666666666666543 2332211111122334456666666665421 1
Q ss_pred CCchhHHHHHHHHHhcCCChhHHHHHHHHHH-------hcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 249 RHDSSLWEVLLGACTTFRNAHVAERVAKKIM-------ELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 249 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.|+. |.. .......|+...+ ..+..+. ++.|+.+.+|..++..+.+.|++++|...|++..+.++
T Consensus 196 ~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2221 211 1112223333332 2233332 23344445666666666666666666666666665443
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.8e-10 Score=94.15 Aligned_cols=289 Identities=12% Similarity=0.018 Sum_probs=198.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHc--ccCC-hhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcc---cHHHHHHHHHhhc
Q 037592 24 ESSLVDMYGKCGLVDESHRVFDKM--LKKN-SVSSSALLQGYCQTGDFESVIRIFREMEEIDLF---SFGIVLRACAGLA 97 (337)
Q Consensus 24 ~~~l~~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~ 97 (337)
+....+-|.++|.+++|++.|.+. ..|+ +..|.....+|...|+|+++.+--.+.++.++. ++..-..++...|
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 455667788889999999999888 4556 667888889999999999999888888883332 4555566778888
Q ss_pred hhhhhHHHH------------------HHHH------------H-hhC--CCCchhHHHHHHHHHh---------cC---
Q 037592 98 ALRLGKEVH------------------CQYI------------R-RSG--CKDVIIESALVDLYAK---------CG--- 132 (337)
Q Consensus 98 ~~~~a~~~~------------------~~~~------------~-~~~--~~~~~~~~~l~~~~~~---------~g--- 132 (337)
++++|..-. ++.+ + .++ -|+.....+....+.. ..
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 888775422 1111 0 011 0222111111111100 00
Q ss_pred -CHHHHHHHHhcCC--------------------CC-----cH------HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCC
Q 037592 133 -CVDFAHQIFLQMP--------------------VR-----NL------ITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180 (337)
Q Consensus 133 -~~~~A~~~~~~~~--------------------~~-----~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 180 (337)
...++.+.+..-. .+ |. .+...-...+.-.|+.-.|..-|+..++...
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 0111222111110 01 11 1111112233457888899999999888654
Q ss_pred CCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHH
Q 037592 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVL 258 (337)
Q Consensus 181 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 258 (337)
.++. .|.-+...|...++.++.++.|+.+..-. +-++.+|..=.+++.-.+++++|..=|++. ...| +...|-.+
T Consensus 358 ~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 358 AFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred ccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 4333 26667778899999999999999995432 446778888899999999999999999985 4444 44556666
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 259 LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 259 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
.-+..+.++++++...|++.++..|+.+..|+...+.+...++++.|.+.|+..++.
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 666678889999999999999999999999999999999999999999999988763
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.41 E-value=2.6e-09 Score=93.12 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=77.0
Q ss_pred HHHHHhcCChHHHHHHHHH-hcCCC-chhHHHHHHHHHhcCCChhHHHH--HHHHHHhcCCCccchHHHHHHHHHHcCCh
Q 037592 227 VDLLGRAGLLEEAETLIEN-ADCRH-DSSLWEVLLGACTTFRNAHVAER--VAKKIMELKPDCHLSYVLLDNVYRAVGRW 302 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 302 (337)
...+...|++++|.+.|.. +-..| ++....++...+.+.|+..-|.. ++..+.+++|.++..|..++..+.+.|+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 3344445666666666654 34445 45567788889999999888888 99999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCccCCCCccee
Q 037592 303 NDAFKIRTLMKYSGVKKMPGKSWIE 327 (337)
Q Consensus 303 ~~A~~~~~~m~~~~~~~~~~~~~~~ 327 (337)
+.|.+.|+...+-... +|-..|..
T Consensus 771 ~~Aaecf~aa~qLe~S-~PV~pFs~ 794 (799)
T KOG4162|consen 771 KQAAECFQAALQLEES-NPVLPFSN 794 (799)
T ss_pred HHHHHHHHHHHhhccC-CCcccccc
Confidence 9999999988775543 35555544
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.5e-10 Score=89.53 Aligned_cols=296 Identities=10% Similarity=-0.041 Sum_probs=215.8
Q ss_pred CCchHhHHHHHHHHHh--cCChHHHHHHHHHc-----ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHH--
Q 037592 18 CGNVVVESSLVDMYGK--CGLVDESHRVFDKM-----LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGI-- 88 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 88 (337)
+|...+...-+.+++. .++...|...+-.+ ...|+.....+..++...|+.++|+..|++....|..+...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3333333334444433 45555555544333 33478888999999999999999999999988744443322
Q ss_pred -HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCC
Q 037592 89 -VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMISGFAQNGR 164 (337)
Q Consensus 89 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 164 (337)
-...+.+.|+++....+...+....- .+...|..-+.......+++.|+.+-++... .+...+-.-...+...|+
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc
Confidence 23345677888887777777766532 3334444455566778899999999998874 355566666688899999
Q ss_pred HhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHh-cCChHHHHHH
Q 037592 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV-DLLGR-AGLLEEAETL 242 (337)
Q Consensus 165 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~ 242 (337)
+++|.-.|+..... -+-+...|..++.+|...|.+.+|...-+...+.. +.+..+.+.+. ..+.- ..--++|.++
T Consensus 350 ~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 350 HTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred hHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999999998774 22467899999999999999999998888876533 45555555443 33332 3345789999
Q ss_pred HHH-hcCCCch-hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 243 IEN-ADCRHDS-SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 243 ~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
+++ +...|+- ...+.+...+...|..+.++.++++.+...|+ ......|++.+...+.+.+|+..|......+.+
T Consensus 427 ~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 987 5677764 34556667899999999999999999999999 689999999999999999999999887765554
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=6.2e-11 Score=88.74 Aligned_cols=164 Identities=17% Similarity=0.093 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (337)
+...|.-.|...|+...|..-+++.++.... +..++..+...|.+.|+.+.|.+-|+.++... +-+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHH
Confidence 3445556666677777777777666664221 33455566666666677777777666665321 23345666666666
Q ss_pred HhcCChHHHHHHHHHhcCCC----chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHH
Q 037592 231 GRAGLLEEAETLIENADCRH----DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 306 (337)
|..|++++|...|++.-..| -..+|..+.-+..+.|+++.|...|++.++.+|+.+.....+.....+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 66677777777666542222 23346666666666677777777777777777776666666677777777777777
Q ss_pred HHHHHHHHhCC
Q 037592 307 KIRTLMKYSGV 317 (337)
Q Consensus 307 ~~~~~m~~~~~ 317 (337)
..++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 66666555544
No 69
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.37 E-value=2.2e-09 Score=85.22 Aligned_cols=297 Identities=10% Similarity=0.048 Sum_probs=221.0
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHH---HHHHcCCChhHHHHHHHHHhh--cCccc-HHHHHHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL---QGYCQTGDFESVIRIFREMEE--IDLFS-FGIVLRAC 93 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~ 93 (337)
++.-.--|...+...|++..|+.-|...++-|+..|.++. ..|...|+..-|+.-+.+..+ ||... ...-...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4455566778889999999999999999888877776654 678999999999999999988 66532 23345577
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCC--chhH------------HHHHHHHHhcCCHHHHHHHHhcCC--CC-cHHhHHHHH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKD--VIIE------------SALVDLYAKCGCVDFAHQIFLQMP--VR-NLITWNSMI 156 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~ 156 (337)
.+.|.++.|..-|+.+++..+... ...+ ...+..+.-.|+...|++....+. .| |...|..-.
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 899999999999999998765211 1111 223344566789999999888877 33 778888889
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHH----H---H--
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC----M---V-- 227 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l---~-- 227 (337)
.+|...|++..|+.=++...+.... +..++.-+-..+...|+.+.++...++.+ .+.||...... | .
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999888877665333 44455556666778899999999999887 45676432211 1 1
Q ss_pred ----HHHHhcCChHHHHHHHHH-hcCCCchh-----HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 228 ----DLLGRAGLLEEAETLIEN-ADCRHDSS-----LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 228 ----~~~~~~g~~~~A~~~~~~-~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
......++|.++.+-.++ |...|... .+..+-.++...|++.+|++...++++..|++..++..-..+|.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 122344566666666655 45555422 23344567889999999999999999999999999999999999
Q ss_pred HcCChhhHHHHHHHHHHhCCccC
Q 037592 298 AVGRWNDAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 298 ~~g~~~~A~~~~~~m~~~~~~~~ 320 (337)
-...+++|+.-|+...+.+...+
T Consensus 353 ~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCcccH
Confidence 99999999999999887665443
No 70
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=4.7e-09 Score=86.81 Aligned_cols=317 Identities=11% Similarity=0.076 Sum_probs=200.4
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREM 78 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (337)
++.|..+|+..+... ..+...|-.-+.+=.++..+..|..++++.+. | --..|.-.+..=-..|++..|.++|++-
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 456777888777755 44666677777777777777888888777632 2 2223444444444567777777777776
Q ss_pred hh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC------CcHH
Q 037592 79 EE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV------RNLI 150 (337)
Q Consensus 79 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~ 150 (337)
.+ |+..+|.+.+..-.+.+.++.|..+|++.+-. .|++..|-..+..-.+.|....|..+|+.... .+..
T Consensus 168 ~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 168 MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 66 77777777777777777777777777777654 26677777777777777777777777766541 0112
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHH--------------------------------------------HhcCCCCCHhH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDM--------------------------------------------TEGGTKPDHVS 186 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m--------------------------------------------~~~~~~p~~~~ 186 (337)
.+.++...=.++..++.|.-+|+-. ... -+.|-.+
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDs 324 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDS 324 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchH
Confidence 2333222222233333333333222 222 1234445
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCH--HHHHHHHH--------HHHhcCChHHHHHHHHHh-cCCC-chhH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI--EHYNCMVD--------LLGRAGLLEEAETLIENA-DCRH-DSSL 254 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 254 (337)
|--.+..-...|+.+...++|++++. +++|-. ..|...|- .-....+.+.+.++|+.. ..-| ...|
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFt 402 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFT 402 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccch
Confidence 55555555667888888888888854 555531 12222221 112467888888888763 3333 2233
Q ss_pred ----HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCccee
Q 037592 255 ----WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327 (337)
Q Consensus 255 ----~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 327 (337)
|-.......++.+...|.+++..++...|. ..+|...+..-.+.++++....+|++..+.+. ..-..|+.
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlFk~YIelElqL~efDRcRkLYEkfle~~P--e~c~~W~k 476 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLFKGYIELELQLREFDRCRKLYEKFLEFSP--ENCYAWSK 476 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh--HhhHHHHH
Confidence 334445566888999999999999999999 68888899999999999999999999988554 34445543
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=1e-09 Score=82.29 Aligned_cols=196 Identities=13% Similarity=0.049 Sum_probs=123.9
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCC
Q 037592 87 GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNG 163 (337)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 163 (337)
..+.-.|...|+...|..-+++.++..+ .+..+|..+...|.+.|+.+.|.+.|++.. +.+..+.|...-.+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 3455566666666666666666666654 556666667777777777777777776655 334556666666667777
Q ss_pred CHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 164 RGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
++++|...|++....-.-| -..+|..+.-+..+.|+.+.|...|++.++.. +-.+.+...+.....+.|++-.|..+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHH
Confidence 7777777777766542111 22355555555566777777777777775432 33345666667777777777777777
Q ss_pred HHHh--cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 243 IENA--DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 243 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
++.. +..++..+.-..|..-...|+.+.+.+.=..+....|.+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 7654 233555555555666667777777777666666677763
No 72
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=3.6e-10 Score=99.72 Aligned_cols=217 Identities=17% Similarity=0.069 Sum_probs=131.3
Q ss_pred HHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC----ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcC
Q 037592 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK----NSVSSSALLQGYCQTGDFESVIRIFREMEEID 82 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 82 (337)
.++-.+...|+.|+-+||.++|.-||..|+.+.|- +|.-|.-. +...++.++.+....++.+.+. +|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56778899999999999999999999999999998 88877222 2334445554444444444332 344
Q ss_pred cccHHHHHHHHHhhchhhh---hHHHHHHHHH----hhCC-------------C-CchhHHHHHHHHHhcCCHHHHHHHH
Q 037592 83 LFSFGIVLRACAGLAALRL---GKEVHCQYIR----RSGC-------------K-DVIIESALVDLYAKCGCVDFAHQIF 141 (337)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~-------------~-~~~~~~~l~~~~~~~g~~~~A~~~~ 141 (337)
..+|..|..+|...||... ..+.+..... .|.- | ...--...+....-.|-|+.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554332 1111111100 0000 0 0000011222222333344444433
Q ss_pred hcCC----------------------------------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHH
Q 037592 142 LQMP----------------------------------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187 (337)
Q Consensus 142 ~~~~----------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 187 (337)
..++ .+++.+|.+.+..-..+|+.+.|..++.+|++.|++.+..-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 3222 367777888888888888888888888888888888777777
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
-.++.+ .++...+..+++.| ...|+.|+..|+...+..+...|+
T Consensus 243 wpLl~g---~~~~q~~e~vlrgm-qe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGM-QEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHH-HHhcCCCCcchhHHHHHhhhcchh
Confidence 766644 67777777777777 555888888887766665555444
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=1.4e-09 Score=94.50 Aligned_cols=253 Identities=11% Similarity=0.054 Sum_probs=142.2
Q ss_pred HHcCCChhHHHHHHHHHhh--cCcc-cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc-----CC
Q 037592 62 YCQTGDFESVIRIFREMEE--IDLF-SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC-----GC 133 (337)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~ 133 (337)
+...|++++|++.+++-.. +|.. ........+.+.|+.++|..+|..+++.++ .+..-|..+..+..-. ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccccccc
Confidence 4455666666666655444 3333 233344555566666666666666666654 4444444444444221 13
Q ss_pred HHHHHHHHhcCCC--CcHHhHHHHHHHHHhCCCH-hHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 134 VDFAHQIFLQMPV--RNLITWNSMISGFAQNGRG-EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 134 ~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
.+...++++++.. |...+...+.-.+.....+ ..+..++..+...|+++ +|+.+-..|......+-..+++...
T Consensus 93 ~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred HHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHH
Confidence 4444555554441 2111111111111111122 23344555666666653 4444444444444444444444443
Q ss_pred HHhc-------------CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHH-hcCCCc-hhHHHHHHHHHhcCCChhHHHH
Q 037592 211 TKEY-------------RIKPKI--EHYNCMVDLLGRAGLLEEAETLIEN-ADCRHD-SSLWEVLLGACTTFRNAHVAER 273 (337)
Q Consensus 211 ~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 273 (337)
.... .-+|+. .++..+.+.|-..|++++|++++++ +...|+ +..|..-...+-..|++++|.+
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 2211 112333 2445667777888888888888886 455565 4455566677888888888888
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 274 VAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 274 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
.++.+.++++.|...-...+..+.+.|+.++|.+++..+-+.+..
T Consensus 250 ~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~ 294 (517)
T PF12569_consen 250 AMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD 294 (517)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence 888888888887777777778888888888888888877766653
No 74
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.32 E-value=3.6e-10 Score=91.60 Aligned_cols=250 Identities=13% Similarity=0.099 Sum_probs=149.1
Q ss_pred HHHHHhcCChHHHHHHHHHcccC----ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhH
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKK----NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGK 103 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 103 (337)
++-+.-.|++..++.-.+ .... +......+.+++...|+++.++.-+..-..|.......+...+....+-+.+.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHH
Confidence 344556788888886555 3222 23345566788888888776554443333355545544444443333444444
Q ss_pred HHHHHHHHhhCC-CCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCC
Q 037592 104 EVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182 (337)
Q Consensus 104 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 182 (337)
.-+++.+..... .+..+.......+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~e 162 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DE 162 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 444443333222 12223333345566678888888888766 45566667778888888888888888888763 33
Q ss_pred CHhHHHHHHHHHhh----cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHH
Q 037592 183 DHVSFIGVLSACSH----MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWE 256 (337)
Q Consensus 183 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~ 256 (337)
| .+...++.++.. ...+.+|..+|+++.. ..++++.+.+.+..++...|++++|.+++++. .. +.++.+..
T Consensus 163 D-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 163 D-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp C-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred c-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 3 344445444432 2357888888888743 44677778888888888888888888888763 32 23455566
Q ss_pred HHHHHHhcCCCh-hHHHHHHHHHHhcCCCc
Q 037592 257 VLLGACTTFRNA-HVAERVAKKIMELKPDC 285 (337)
Q Consensus 257 ~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~ 285 (337)
.++.+....|+. +.+.+.+.++....|++
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 666666666766 66677777777788874
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2e-10 Score=96.87 Aligned_cols=222 Identities=13% Similarity=0.045 Sum_probs=179.3
Q ss_pred HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHh
Q 037592 90 LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGE 166 (337)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 166 (337)
..-+.+.|++.+|.-.|+..++..+ .+...|..|.......++-..|+..+++.. +.+..+.-.|.-+|...|.-.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 3345788999999999999999876 778999999999999999999999998887 346678888889999999999
Q ss_pred HHHHHHHHHHhcCCCC--------CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 167 EALRIFDDMTEGGTKP--------DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
+|++.++.-+...++- +...-.. ..+.....+.+..++|-++....+..+|+.+...|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999998876543210 0000000 12222334455667777776776766888899999999999999999
Q ss_pred HHHHHHH-hcCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 239 AETLIEN-ADCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 239 A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
|...|+. +..+| |...||.|...++...+..+|+..|++++++.|....+...|+.+|...|.+++|...|-+.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999997 45666 5678999999999999999999999999999999999999999999999999999998876654
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.29 E-value=7.5e-11 Score=95.58 Aligned_cols=250 Identities=13% Similarity=0.071 Sum_probs=169.5
Q ss_pred HHHHcCCChhHHHHHHHHHhh----cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 037592 60 QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 135 (337)
+-+.-.|++..++.-.+ ... .+......+.+++...|+++.+.. ++... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchH
Confidence 34456788888886666 322 122345567788888888765443 33333 3466666666655555445666
Q ss_pred HHHHHHhcCC-CC----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 136 FAHQIFLQMP-VR----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 136 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
.++.-+++.. .+ +..........+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776666554 22 2223333345677889999999988643 35666777889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhcC--CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 211 TKEYRIKPKIEHYNCMVDLLGR----AGLLEEAETLIENADC--RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+ ....| .+...+..++.. ...+.+|..+|+++.. .+++.+.+.+..++...|++++|.+++.++.+.+|+
T Consensus 158 -~--~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 -Q--QIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp -H--CCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred -H--hcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 4 33444 344445554443 3479999999999853 467788888889999999999999999999999999
Q ss_pred ccchHHHHHHHHHHcCCh-hhHHHHHHHHHHhCCccCCCCcceec
Q 037592 285 CHLSYVLLDNVYRAVGRW-NDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
++.+...++-+....|+. +.+.+++.++... .|.+.|+.-
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~----~p~h~~~~~ 274 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS----NPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH----TTTSHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh----CCCChHHHH
Confidence 999999999999999998 5677788887764 355666543
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=1.9e-08 Score=87.61 Aligned_cols=283 Identities=12% Similarity=0.091 Sum_probs=181.9
Q ss_pred HHHHHhcCChHHHHHHHHHcccC--C-hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHH-h-----h
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKK--N-SVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACA-G-----L 96 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~-~-----~ 96 (337)
...+...|++++|++.++.-... | ..........+.+.|+.++|..+|..+.. |+...|...+..+. . .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 45567889999999998776322 3 44566778889999999999999999988 77777666665554 1 1
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH-HHHHHHhcCCCCc-HHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD-FAHQIFLQMPVRN-LITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
.+.+...++|+++...-+ .......+.-.+.....+. .+...+..+.... +.+++.+-..|....+.+-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 246677788888776643 2222222222222212222 2333334444333 34566666666655555555555555
Q ss_pred HHhc----C----------CCCCHh--HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChH
Q 037592 175 MTEG----G----------TKPDHV--SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 175 m~~~----~----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 237 (337)
.... + -+|+.. ++..+...|...|++++|+.++++++.. .|+ +..|..-...|-..|+++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHH
Confidence 4322 1 123332 3344567777899999999999988653 454 677888888999999999
Q ss_pred HHHHHHHHhc-CC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcC--CCcc-----chH--HHHHHHHHHcCChhhHH
Q 037592 238 EAETLIENAD-CR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELK--PDCH-----LSY--VLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 238 ~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~-----~~~--~~l~~~~~~~g~~~~A~ 306 (337)
+|.+.++... .. .|-..-+-.+..+.+.|++++|.+.+....+.+ |..- -.| ...+.+|.+.|++..|+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999998753 22 244444445566789999999999888876633 3210 022 34567889999999999
Q ss_pred HHHHHHHHh
Q 037592 307 KIRTLMKYS 315 (337)
Q Consensus 307 ~~~~~m~~~ 315 (337)
..|..+.+.
T Consensus 326 k~~~~v~k~ 334 (517)
T PF12569_consen 326 KRFHAVLKH 334 (517)
T ss_pred HHHHHHHHH
Confidence 888776553
No 78
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.7e-11 Score=71.38 Aligned_cols=50 Identities=30% Similarity=0.491 Sum_probs=45.1
Q ss_pred CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037592 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 182 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (337)
||..+|++++.+|++.|++++|.++|++| .+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M-~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEM-KKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999 455999999999999998874
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.25 E-value=6.6e-08 Score=82.25 Aligned_cols=297 Identities=7% Similarity=-0.029 Sum_probs=181.7
Q ss_pred Cch-HhHHHHHHHHHhcCChHHHHHHHHHcc---cCChh---hHHHHHHHHHcCCChhHHHHHHHHHhh--cCcc-cHHH
Q 037592 19 GNV-VVESSLVDMYGKCGLVDESHRVFDKML---KKNSV---SSSALLQGYCQTGDFESVIRIFREMEE--IDLF-SFGI 88 (337)
Q Consensus 19 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ 88 (337)
||- ..|..+...+...|+.+.+...+.... .++.. ........+...|++++|.+++++..+ |+.. .+..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 443 456666677777888888777776652 22222 233334567788999999999999887 5443 2222
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhC--CC-CchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhC
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSG--CK-DVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQN 162 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 162 (337)
...+...++...+.....+...... .| .......+...+...|++++|...+++.. +.+...+..+...|...
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 2233333333333333333332211 12 23444556678899999999999999887 34566788889999999
Q ss_pred CCHhHHHHHHHHHHhcCCC-CCH--hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH-H--HHHHHHHhcCCh
Q 037592 163 GRGEEALRIFDDMTEGGTK-PDH--VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-N--CMVDLLGRAGLL 236 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~-p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~ 236 (337)
|++++|...+++....... |+. ..+..+...+...|++++|..+++.+.......+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999999998775322 222 234457778889999999999999985322111222221 1 223333444543
Q ss_pred HHHHHH---HHHh-cC-CCchhHHH--HHHHHHhcCCChhHHHHHHHHHHhc-CC---C-----ccchHHHHHHHHHHcC
Q 037592 237 EEAETL---IENA-DC-RHDSSLWE--VLLGACTTFRNAHVAERVAKKIMEL-KP---D-----CHLSYVLLDNVYRAVG 300 (337)
Q Consensus 237 ~~A~~~---~~~~-~~-~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~-~p---~-----~~~~~~~l~~~~~~~g 300 (337)
..+.+. .... .. ......+. ....++...|+.+.|..++..+... .. . ..........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333333 2211 11 11112222 3456678999999999999988762 11 1 1223344455677889
Q ss_pred ChhhHHHHHHHHHHhC
Q 037592 301 RWNDAFKIRTLMKYSG 316 (337)
Q Consensus 301 ~~~~A~~~~~~m~~~~ 316 (337)
++++|.+.+.+....+
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998877654
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=2.8e-08 Score=79.50 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=26.3
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 47 (337)
++++|+.++..+.+.. .|+...+-.|..++.-.|.+.+|..+-...
T Consensus 72 dY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 72 DYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred cHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 3556666666666544 444455555555555566666666665554
No 81
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.20 E-value=4.7e-09 Score=96.95 Aligned_cols=215 Identities=11% Similarity=0.075 Sum_probs=167.2
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC--------CcHHhHHHHHHHHHhCCCHhHHHHHHH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--------RNLITWNSMISGFAQNGRGEEALRIFD 173 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (337)
..+-|++++...+ .+...|-..|......++.++|+++++++.. .-...|.++++.-..-|.-+...++|+
T Consensus 1443 saeDferlvrssP-NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSP-NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCC-CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3344555555443 5677888888888899999999999888772 123578888877777788888889999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCC--
Q 037592 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRH-- 250 (337)
Q Consensus 174 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-- 250 (337)
++.+. .. ....|..|...|.+.+..++|.++++.|+++.+ .....|...+..+.+..+-+.|..++++ +..-|
T Consensus 1522 RAcqy-cd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1522 RACQY-CD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHh-cc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 98874 22 234567788888889999999999999988765 6677888889999999888889888876 33333
Q ss_pred -chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCC
Q 037592 251 -DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMP 321 (337)
Q Consensus 251 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 321 (337)
........+..-.+.|+.+.+..+|+..+.-.|.....|+..++.-.+.|+.+.+..+|++....++.+..
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 44455566667788899999999999999888888889999999999999999999999999888887643
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.3e-08 Score=79.54 Aligned_cols=284 Identities=10% Similarity=0.031 Sum_probs=195.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHH-HHHHHHh
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGI-VLRACAG 95 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~ 95 (337)
.-+++.+..+.+..+++.|++++..-.++ +......|..+|-...++..|-++|+++-. |...-|.. -...+.+
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 34566777778889999999998877443 455678888999999999999999999877 55544433 3455677
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchh--HHHHHHHHHhcCCHHHHHHHHhcCC-CCcHHhHHHHHHHHHhCCCHhHHHHHH
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVII--ESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIF 172 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (337)
.+.+..|.++...|... ++... ...-.......+++..+..++++.. ..+..+.+...-...+.|+++.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 78888888888777543 22111 1111223345788888899998888 456666666666677899999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC-------------C------H--HHHHHHHH---
Q 037592 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-------------K------I--EHYNCMVD--- 228 (337)
Q Consensus 173 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~------~--~~~~~l~~--- 228 (337)
+...+-+--.....|+..+ ++.+.|+++.|.++..+++++ |++. | + ..-+.+++
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 9988764333456677555 455678899999999888665 5421 1 1 11123333
Q ss_pred ----HHHhcCChHHHHHHHHHhc----CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 229 ----LLGRAGLLEEAETLIENAD----CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 229 ----~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
.+.+.|+++.|.+.+..|+ ...|+.|...+.-. --.+++-...+-+.-.++++|-.+.+|..++..|++..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 3456788888888888774 33466666554422 22345555666666677778876789999999999988
Q ss_pred ChhhHHHHHHH
Q 037592 301 RWNDAFKIRTL 311 (337)
Q Consensus 301 ~~~~A~~~~~~ 311 (337)
-++-|-.++-+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 88888777643
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=9.5e-08 Score=76.15 Aligned_cols=279 Identities=13% Similarity=0.029 Sum_probs=203.8
Q ss_pred chhhHHHHHHHHhcCCCCc-hHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHH---HHHHHHcCCChhHHHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSA---LLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~ 77 (337)
+.+|+.-+...++. .|+ -.++-.-...|...|+-..|+.-|++.++.-+..+.+ -...+.++|.+++|..-|+.
T Consensus 54 ~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 54 LSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred HHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence 34566666666664 343 3445556678889999999999898885443333333 34568899999999999999
Q ss_pred Hhh--cCcc----------------cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 78 MEE--IDLF----------------SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 78 ~~~--~~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
... |+.. .....+..+...|+..-|+....++++..+ -+...+..-..+|...|+...|+.
T Consensus 132 vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~ 210 (504)
T KOG0624|consen 132 VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIH 210 (504)
T ss_pred HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHH
Confidence 987 3321 123344556778999999999999999865 788888889999999999999998
Q ss_pred HHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHH----HH---------HHHHhhcCchhhH
Q 037592 140 IFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI----GV---------LSACSHMGLIDRG 203 (337)
Q Consensus 140 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~l---------~~~~~~~~~~~~a 203 (337)
-++... .-+..++.-+...+...|+.+.++...++.++ +.||..... .+ +....+.++|.++
T Consensus 211 Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~c 288 (504)
T KOG0624|consen 211 DLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTEC 288 (504)
T ss_pred HHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 877665 44666777778888999999999999999888 566654221 11 1223445777778
Q ss_pred HHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCc-hhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 204 RKHFASMTKEYRIKPK-----IEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHD-SSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
....+..++. .|. ...+..+-.++...|++.+|++.-.+ +...|+ +.++.--..+|.-...++.|+.-|+
T Consensus 289 le~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 289 LEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred HHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7777777643 343 22334455677788999999998876 455555 6677777788999999999999999
Q ss_pred HHHhcCCCccch
Q 037592 277 KIMELKPDCHLS 288 (337)
Q Consensus 277 ~~~~~~p~~~~~ 288 (337)
.+.+.+|++..+
T Consensus 366 ~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 366 KALELNESNTRA 377 (504)
T ss_pred HHHhcCcccHHH
Confidence 999999886443
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=2.1e-07 Score=80.08 Aligned_cols=307 Identities=13% Similarity=0.134 Sum_probs=173.5
Q ss_pred hhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 4 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
..++..+.+++ +.+-...+.....-.+...|+-++|.......... +.+.|+.+.-.+-...++++|++.|..+..
T Consensus 25 kgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 25 KGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred hHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 34444444444 22223334443444445556666666655554332 344566666656566666666666665554
Q ss_pred --cC-----------------------------------cccHHHHHHHHHhhchhhhhHHHHHHHHHhhC-CCCchhHH
Q 037592 81 --ID-----------------------------------LFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVIIES 122 (337)
Q Consensus 81 --~~-----------------------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 122 (337)
|| ...|...+.+..-.|+...|..+.++..+... .|+...+.
T Consensus 104 ~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 104 IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 21 22355555666667777777777777766542 24444443
Q ss_pred HH------HHHHHhcCCHHHHHHHHhcCCCC--cHH-hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH-H
Q 037592 123 AL------VDLYAKCGCVDFAHQIFLQMPVR--NLI-TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL-S 192 (337)
Q Consensus 123 ~l------~~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~ 192 (337)
.. .....+.|..++|.+.+..-... |.. .-..-...+.+.++.++|..++..++. ..||...|...+ .
T Consensus 184 ~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~--rnPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 184 HSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE--RNPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh--hCchhHHHHHHHHH
Confidence 22 22345667777777777655522 222 223445677888999999999999888 457777666555 4
Q ss_pred HHhhcCchhhHH-HHHHHHHHhcC--CCC----------------------------CHHHHHHHHHHHHhcCChHHHHH
Q 037592 193 ACSHMGLIDRGR-KHFASMTKEYR--IKP----------------------------KIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 193 ~~~~~~~~~~a~-~~~~~~~~~~~--~~~----------------------------~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
++.+-.+.-++. .+|....+... ..| -+.++..+...|-. ..+.-
T Consensus 262 ~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p~k~~- 337 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---PEKVA- 337 (700)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---hhHhH-
Confidence 443333333333 56665522110 000 01112222222211 11111
Q ss_pred HHHHh---------c------------CCCchhHHHH--HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 242 LIENA---------D------------CRHDSSLWEV--LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 242 ~~~~~---------~------------~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
+++++ + .+|+...|.. ++..+-..|+++.|..+.+.++...|.-+..|..-.+.+..
T Consensus 338 ~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH 417 (700)
T KOG1156|consen 338 FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKH 417 (700)
T ss_pred HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHh
Confidence 22221 0 2456665654 44567888899999999998888888877888888888888
Q ss_pred cCChhhHHHHHHHHHHhCC
Q 037592 299 VGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 299 ~g~~~~A~~~~~~m~~~~~ 317 (337)
.|..++|...+++..+.+.
T Consensus 418 ~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 418 AGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cCChHHHHHHHHHHHhccc
Confidence 8888888888888766544
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=5.1e-07 Score=77.00 Aligned_cols=109 Identities=5% Similarity=-0.009 Sum_probs=53.9
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCC--hhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN--SVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
+++|.+.-..++..+ +-+...+..=+-++.+.+++++|+.+.+.-.... ..-+..-..+.-+.++.++|+..++-..
T Consensus 28 ~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~ 106 (652)
T KOG2376|consen 28 YEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLD 106 (652)
T ss_pred HHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhccc
Confidence 566777777777665 3344455555566677777777775554332111 0101112233334555555555555322
Q ss_pred hcCcccHHHHHHHHHhhchhhhhHHHHHHHHH
Q 037592 80 EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111 (337)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (337)
..|..+...-...+.+.+++++|..+|+.+.+
T Consensus 107 ~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 107 RLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 23333444444445555555555555555533
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.12 E-value=2.5e-08 Score=79.55 Aligned_cols=183 Identities=10% Similarity=-0.050 Sum_probs=122.8
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCc-H---HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh--HH
Q 037592 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRN-L---ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV--SF 187 (337)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~ 187 (337)
.....+..++..+...|++++|...|+++. .|+ . .++..+..++...|++++|...++++.+........ ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345666777788888888888888888776 232 2 356777888888888888888888887753321111 34
Q ss_pred HHHHHHHhhc--------CchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHH
Q 037592 188 IGVLSACSHM--------GLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258 (337)
Q Consensus 188 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 258 (337)
..+..++... |+.+.|.+.++.++.. .|+ ...+..+..... .... . ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~---~--------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR---L--------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH---H--------HHHHHHH
Confidence 4444445443 6778888888888654 333 222222211100 0000 0 0011245
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCc---cchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 259 LGACTTFRNAHVAERVAKKIMELKPDC---HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 259 ~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
...+.+.|++++|+..++++.+..|++ +..+..++.++...|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566889999999999999999987764 4688999999999999999999999887653
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=6.3e-07 Score=76.25 Aligned_cols=265 Identities=12% Similarity=0.027 Sum_probs=170.9
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-Cccc---HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHH--
Q 037592 52 SVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFS---FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA-- 123 (337)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 123 (337)
...|..+...+...|+.+.+.+.+.+..+ + +... .......+...|++++|...+++.++..+ .+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhH
Confidence 45677777888888889988777777665 2 2222 22233456778999999999999998754 34444442
Q ss_pred -HHHHHHhcCCHHHHHHHHhcCCC--C-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 124 -LVDLYAKCGCVDFAHQIFLQMPV--R-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 124 -l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
+.......+..+.+.+.+..... | .......+...+...|++++|...+++..+... .+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCC
Confidence 22222234566666666665332 2 233455666788999999999999999998632 245566777788999999
Q ss_pred hhhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhc-CCCchhHH----H--HHHHHHhcCCChhH
Q 037592 200 IDRGRKHFASMTKEYRIKPKI--EHYNCMVDLLGRAGLLEEAETLIENAD-CRHDSSLW----E--VLLGACTTFRNAHV 270 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~----~--~l~~~~~~~g~~~~ 270 (337)
+++|..+++..+......++. ..|..+...+...|++++|..++++.. ..|....+ + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999986542222332 345678889999999999999999853 22311111 1 22233444454444
Q ss_pred HHHH--H-HHHHhcCCCccchH--HHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 271 AERV--A-KKIMELKPDCHLSY--VLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 271 a~~~--~-~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
+.++ + .......|.....+ .....++...|+.++|...++.+......
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~ 296 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASS 296 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4333 2 21111112212222 35667788889999999999998765433
No 88
>PLN02789 farnesyltranstransferase
Probab=99.09 E-value=1.1e-07 Score=78.33 Aligned_cols=224 Identities=10% Similarity=0.032 Sum_probs=116.4
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCC--HhHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG-CVDFAHQIFLQMP---VRNLITWNSMISGFAQNGR--GEEALR 170 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~--~~~a~~ 170 (337)
+..++|+.+..++++..+ .+..+|+....++...| ++++++..++++. +.+..+|+.....+.+.|+ .++++.
T Consensus 51 e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 344444444444444433 33334444434444444 3455555554443 2233344433333333333 244555
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCh----HHHHHHH
Q 037592 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA---GLL----EEAETLI 243 (337)
Q Consensus 171 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~ 243 (337)
+++++.+...+ +..+|+...-.+...|+++++++.++.+++.. +-+..+|+....++.+. |.. +++..+.
T Consensus 130 ~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 130 FTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 66565554322 44455555555555566666666666665432 33444555444444333 212 3344444
Q ss_pred HH-hcCCC-chhHHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC-----------------
Q 037592 244 EN-ADCRH-DSSLWEVLLGACTT----FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG----------------- 300 (337)
Q Consensus 244 ~~-~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------------- 300 (337)
.+ +...| +...|+.+...+.. .++..+|.+++.++....|+++.+...|+..|....
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 32 33333 45566666666655 234566778887777778887778888888887632
Q ss_pred -ChhhHHHHHHHHHHhCCccCCCCcce
Q 037592 301 -RWNDAFKIRTLMKYSGVKKMPGKSWI 326 (337)
Q Consensus 301 -~~~~A~~~~~~m~~~~~~~~~~~~~~ 326 (337)
..++|.++++.+. ...|-....|-
T Consensus 287 ~~~~~a~~~~~~l~--~~d~ir~~yw~ 311 (320)
T PLN02789 287 SDSTLAQAVCSELE--VADPMRRNYWA 311 (320)
T ss_pred ccHHHHHHHHHHHH--hhCcHHHHHHH
Confidence 2367888888883 45554555553
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.5e-07 Score=79.20 Aligned_cols=314 Identities=16% Similarity=0.087 Sum_probs=212.6
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc--ccCC-hhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKN-SVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
+++.|...|-+.+... ++|.+.|+.-..+|+..|++++|.+=-.+. +.|+ ..-|.....++.-.|++++|+.-|.+
T Consensus 17 d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred cHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 5778888998888876 558888999999999999999998777666 3444 44689999999999999999999988
Q ss_pred Hhh--cCcc-cHHHHHHHHHhh------------------------------------------------chhhhhHHHH
Q 037592 78 MEE--IDLF-SFGIVLRACAGL------------------------------------------------AALRLGKEVH 106 (337)
Q Consensus 78 ~~~--~~~~-~~~~l~~~~~~~------------------------------------------------~~~~~a~~~~ 106 (337)
-++ |+.. .+.-+..++... .+.+......
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~ 175 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD 175 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence 776 3221 222222222000 0000011111
Q ss_pred HHHHHh--------h-------CCC------------C----------chhHHHHHHHHHhcCCHHHHHHHHhcCCC--C
Q 037592 107 CQYIRR--------S-------GCK------------D----------VIIESALVDLYAKCGCVDFAHQIFLQMPV--R 147 (337)
Q Consensus 107 ~~~~~~--------~-------~~~------------~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 147 (337)
-.+... + ..| + ..-...+.+...+..+++.|++.+..... .
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~ 255 (539)
T KOG0548|consen 176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELAT 255 (539)
T ss_pred HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhh
Confidence 000000 0 001 0 11234578888888899999988887763 3
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHH-------HHHHHhhcCchhhHHHHHHHHHHhcCCCCCH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG-------VLSACSHMGLIDRGRKHFASMTKEYRIKPKI 220 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 220 (337)
+..-++....+|...|.+.++...-....+.|.. ...-|+. +..++.+.++++.|+..|.+.+..+. .|+.
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R-t~~~ 333 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR-TPDL 333 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc-CHHH
Confidence 4445666677788888888777777666665432 2222332 23355556778888888887765432 2221
Q ss_pred HH-------------------------HHHHHHHHHhcCChHHHHHHHHHh--cCCCchhHHHHHHHHHhcCCChhHHHH
Q 037592 221 EH-------------------------YNCMVDLLGRAGLLEEAETLIENA--DCRHDSSLWEVLLGACTTFRNAHVAER 273 (337)
Q Consensus 221 ~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~ 273 (337)
.. ...-...+.+.|++..|.+.|.++ ..+.|...|..-.-+|.+.|.+..|++
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHH
Confidence 11 111134566789999999999874 344567788888899999999999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 274 VAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 274 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
-.+..++++|+....|..-+.++....+|++|++.|++-.+...
T Consensus 414 Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 414 DAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999989999989999999999999999988777653
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.08 E-value=2.6e-07 Score=88.57 Aligned_cols=294 Identities=12% Similarity=0.005 Sum_probs=191.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHccc---C-----C----hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCc------c
Q 037592 25 SSLVDMYGKCGLVDESHRVFDKMLK---K-----N----SVSSSALLQGYCQTGDFESVIRIFREMEE--IDL------F 84 (337)
Q Consensus 25 ~~l~~~~~~~~~~~~A~~~~~~~~~---~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~------~ 84 (337)
......+...|++++|...++.... . + ......+...+...|++++|...+++... +.. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3445556678999999888876521 1 1 11122334556789999999999998766 222 1
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCC-----CchhHHHHHHHHHhcCCHHHHHHHHhcCCC-------C----c
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-----DVIIESALVDLYAKCGCVDFAHQIFLQMPV-------R----N 148 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~ 148 (337)
..+.+...+...|++++|...+++........ ...++..+...+...|++++|...+++... + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 33455566778899999999998887643211 123445667788899999999988876541 1 1
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC--CCCC--HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH-
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGG--TKPD--HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY- 223 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 223 (337)
...+..+...+...|++++|...+++..... ..+. ...+..+...+...|+.+.|.+.+..+............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2234455667778899999999998875531 1122 2334445566778899999999988874321111111111
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHhcCC--Cchh----HHHHHHHHHhcCCChhHHHHHHHHHHhcC------CCccc
Q 037592 224 ----NCMVDLLGRAGLLEEAETLIENADCR--HDSS----LWEVLLGACTTFRNAHVAERVAKKIMELK------PDCHL 287 (337)
Q Consensus 224 ----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 287 (337)
...+..+...|+.+.|..++...... .... .+..+..++...|++++|...++++.... +....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11224445688999999998764321 1111 13345567889999999999999987631 12234
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
+...+..++...|+.++|...+.+..+..-.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 6677788999999999999999998875543
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.3e-08 Score=86.16 Aligned_cols=209 Identities=13% Similarity=0.102 Sum_probs=108.5
Q ss_pred HHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhhc---CcccHHHHHHHHHhhchhhhh
Q 037592 29 DMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEEI---DLFSFGIVLRACAGLAALRLG 102 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 102 (337)
..+.+.|++.+|.-.|+..+.. +...|--|.......++-..|+..+++..+. +..+...|...|...|.-..|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3445667777777777666433 3556666766677777777777777777662 233455555566666666667
Q ss_pred HHHHHHHHHhhCCCCchhHHH----H---HHHHHhcCCHHHHHHHHhcCC-----CCcHHhHHHHHHHHHhCCCHhHHHH
Q 037592 103 KEVHCQYIRRSGCKDVIIESA----L---VDLYAKCGCVDFAHQIFLQMP-----VRNLITWNSMISGFAQNGRGEEALR 170 (337)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~----l---~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (337)
...+...+...++ -...-.. . -..+.....+....++|-++. .+|+.....|.-.|...|++++|.+
T Consensus 373 l~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 7766666655431 0000000 0 000011111222233333222 2345555555555555566666666
Q ss_pred HHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 037592 171 IFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLI 243 (337)
Q Consensus 171 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 243 (337)
.|+.++.. +| |...|+-|...++...+.++|+..|++++ .++|+ +.+...|.-+|...|.+++|.+.|
T Consensus 452 cf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 452 CFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 66655552 33 33455555555555555556666665554 33444 344455555555555555555544
No 92
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.07 E-value=9.4e-07 Score=76.22 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=34.7
Q ss_pred ChhHHHHHHHHHHhcC--CCccchHHHHHHHHHH---cCChhhHHHHHHHHHHhCCccCCCCcceeccccc
Q 037592 267 NAHVAERVAKKIMELK--PDCHLSYVLLDNVYRA---VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332 (337)
Q Consensus 267 ~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 332 (337)
-++++.++|++.+.+. |+....|+..+.-+.+ ..+.+.|..+|++..+ |.+|...-+...+++.+
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 3444444444444422 3323344444443332 3467888888888887 66666555555544443
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.9e-06 Score=72.54 Aligned_cols=144 Identities=14% Similarity=0.085 Sum_probs=93.0
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHH--------HHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA--------SMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
.+.++..++....+....-........+......|+++.|.+++. .+. + +.-.+.+...+...+.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~-~--~~~~P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL-E--AKHLPGTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-h--hccChhHHHHHHHHHHhccC
Confidence 355566666555443221122344445566778899999999888 442 2 23334455666777777777
Q ss_pred hHHHHHHHHHh--------cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHH
Q 037592 236 LEEAETLIENA--------DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 236 ~~~A~~~~~~~--------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 306 (337)
-+.|..++.+. ...+ -..++..+...-.+.|+.++|..+++++.+.+|++..+...++.+|+. =+.+.|.
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~-~d~eka~ 511 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR-LDPEKAE 511 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh-cCHHHHH
Confidence 66666666542 1111 122333444455677999999999999999999999999999999988 4567777
Q ss_pred HHHHH
Q 037592 307 KIRTL 311 (337)
Q Consensus 307 ~~~~~ 311 (337)
.+-..
T Consensus 512 ~l~k~ 516 (652)
T KOG2376|consen 512 SLSKK 516 (652)
T ss_pred HHhhc
Confidence 66433
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.04 E-value=9.9e-08 Score=73.27 Aligned_cols=120 Identities=9% Similarity=0.049 Sum_probs=80.9
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHH-HhcCCC--hhHH
Q 037592 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGA-CTTFRN--AHVA 271 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~-~~~~g~--~~~a 271 (337)
.++.+++...++..++.. +.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666665532 556677777777777777777777777763 2333 44455555554 355565 4777
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 272 ERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
.++++++.+.+|+++.++..++..+.+.|++++|...|+++.+....
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 77777777777777777777777777777777777777777765544
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.03 E-value=6e-06 Score=71.46 Aligned_cols=312 Identities=13% Similarity=0.088 Sum_probs=193.3
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC------------------------------
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK------------------------------ 50 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~------------------------------ 50 (337)
++|....+...+.. ..+.+.|+.+.-.+....++++|++.|.... .+
T Consensus 58 ~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL 136 (700)
T KOG1156|consen 58 EEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL 136 (700)
T ss_pred HHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45555555555543 3466778877777777788888888887761 21
Q ss_pred -----ChhhHHHHHHHHHcCCChhHHHHHHHHHhh-----cCcccHHHHH------HHHHhhchhhhhHHHHHHHHHhhC
Q 037592 51 -----NSVSSSALLQGYCQTGDFESVIRIFREMEE-----IDLFSFGIVL------RACAGLAALRLGKEVHCQYIRRSG 114 (337)
Q Consensus 51 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~ 114 (337)
....|...+.++.-.|+...|.++++...+ |+...+.... ......|.++.|.+.+..-... +
T Consensus 137 ql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i 215 (700)
T KOG1156|consen 137 QLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I 215 (700)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H
Confidence 223455666677788999999999998887 4444444332 2345566667776666544332 2
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHH-HHHHHHhCCCHhHHH-HHHHHHHhcCC---CCCH---
Q 037592 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITWNS-MISGFAQNGRGEEAL-RIFDDMTEGGT---KPDH--- 184 (337)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~-l~~~~~~~~~~~~a~-~~~~~m~~~~~---~p~~--- 184 (337)
......-..-...+.+.+++++|..++..+. .||...|.- +..++.+..+..++. .+|....+.-. .|-.
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl 295 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL 295 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH
Confidence 1223333456778899999999999999988 455555544 444554343444444 66766655311 1110
Q ss_pred -----hHHHHHHHHHh----hcC-------------chhhHHHHHHHHHHhc-----CC------------CCCHHHH--
Q 037592 185 -----VSFIGVLSACS----HMG-------------LIDRGRKHFASMTKEY-----RI------------KPKIEHY-- 223 (337)
Q Consensus 185 -----~~~~~l~~~~~----~~~-------------~~~~a~~~~~~~~~~~-----~~------------~~~~~~~-- 223 (337)
.-+...+.-|. +.| +.... .++++.+... |. +|.+..|
T Consensus 296 svl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 296 SVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred HHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 11111111111 111 11111 1333222110 11 4555444
Q ss_pred HHHHHHHHhcCChHHHHHHHHH-hcCCCchh-HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 224 NCMVDLLGRAGLLEEAETLIEN-ADCRHDSS-LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
..+++.+-+.|+++.|..+++. ++..|+.. .|..-...+...|+++.|..++.++.+++-.|...-..-+.-..++++
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence 4567788899999999999997 46566553 233444678999999999999999999876644444455666778899
Q ss_pred hhhHHHHHHHHHHhCC
Q 037592 302 WNDAFKIRTLMKYSGV 317 (337)
Q Consensus 302 ~~~A~~~~~~m~~~~~ 317 (337)
.++|..+...+-+.|.
T Consensus 455 i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREGF 470 (700)
T ss_pred cHHHHHHHHHhhhccc
Confidence 9999999988887775
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.5e-07 Score=76.48 Aligned_cols=283 Identities=11% Similarity=0.018 Sum_probs=195.5
Q ss_pred HHHHhcCChHHHHHHHHHcc---cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCc-ccHHHHHHHHHhhchhhhh
Q 037592 29 DMYGKCGLVDESHRVFDKML---KKNSVSSSALLQGYCQTGDFESVIRIFREMEE--IDL-FSFGIVLRACAGLAALRLG 102 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a 102 (337)
.+.+..|+++.|+..|-+.+ ++|...|..-..+|...|++++|++=-.+-++ |+. ..|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 45678899999999998873 33777888899999999999999988888877 664 3799999999999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCC-------------------------------------------------
Q 037592 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGC------------------------------------------------- 133 (337)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------------------------------------------- 133 (337)
+..|.+-++..+ .+...++.+.+++.....
T Consensus 90 ~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 90 ILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 999999988765 566777777766621100
Q ss_pred --HHHHHHHHhcCC----------------CC------------cH----------HhHHHHHHHHHhCCCHhHHHHHHH
Q 037592 134 --VDFAHQIFLQMP----------------VR------------NL----------ITWNSMISGFAQNGRGEEALRIFD 173 (337)
Q Consensus 134 --~~~A~~~~~~~~----------------~~------------~~----------~~~~~l~~~~~~~~~~~~a~~~~~ 173 (337)
+..|.-.+.... .| |. .....+.+...+..+++.|++.+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111111111000 01 00 123446666677788888888888
Q ss_pred HHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHhc
Q 037592 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP------KIEHYNCMVDLLGRAGLLEEAETLIENAD 247 (337)
Q Consensus 174 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 247 (337)
...+.. .+..-++....+|...|.+......-...++. |... =...+..+..+|.+.++++.|...|++.-
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 887753 34444555567788888777666655555433 2111 01122234446777788888888887531
Q ss_pred ---CCCchhH-------------------------HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHc
Q 037592 248 ---CRHDSSL-------------------------WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299 (337)
Q Consensus 248 ---~~~~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 299 (337)
..|+..+ ...-...+.+.|++..|++.|.+++..+|+++..|....-+|.+.
T Consensus 326 te~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 326 TEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 1121111 111134578999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHh
Q 037592 300 GRWNDAFKIRTLMKYS 315 (337)
Q Consensus 300 g~~~~A~~~~~~m~~~ 315 (337)
|.+..|+.-.+...+.
T Consensus 406 ~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIEL 421 (539)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999877666654
No 97
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.02 E-value=2.6e-08 Score=88.38 Aligned_cols=247 Identities=16% Similarity=0.075 Sum_probs=149.9
Q ss_pred ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh----cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHH
Q 037592 48 LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123 (337)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 123 (337)
+.||..||..+|.-||..|+.+.|- +|.-|.- .+...|+.++......++.+.+. .|...+|+.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 5566677777777777777777666 6666554 34445666666666666665554 366667777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-CCCCCHhHHHHHHHHHhhcCchhh
Q 037592 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG-GTKPDHVSFIGVLSACSHMGLIDR 202 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~ 202 (337)
|..+|...|+... .+..++ -...++..+...|-......++..+.-. +.-||..+ .+.-....|.++.
T Consensus 89 Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaq 157 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQ 157 (1088)
T ss_pred HHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHH
Confidence 7777777776654 222111 2223444555555555555555443221 23344433 2233345577777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh-
Q 037592 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGR-AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME- 280 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 280 (337)
+.+++..+.......|... .+.-... ...+++-..+-+.....|++.++..++.+-...|+.+.|..++.+|.+
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 7777765532211112111 1222222 223444444444444578999999999999999999999999999998
Q ss_pred cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCc
Q 037592 281 LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324 (337)
Q Consensus 281 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 324 (337)
.-|-.+-.|..|+-+ .+...-+..++.-|.+.|+.|+..+.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 445544445555444 78888888999999999999876653
No 98
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.02 E-value=1.7e-06 Score=74.64 Aligned_cols=277 Identities=16% Similarity=0.172 Sum_probs=189.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccCC-------hhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCc----------
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKKN-------SVSSSALLQGYCQTGDFESVIRIFREMEE-IDL---------- 83 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------- 83 (337)
..|..+...|-+.|+++.|..+|++..+-+ ..+|-.-...=.+..+++.|+++.+.... |..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 357888899999999999999999985543 23455555556678889999999988766 322
Q ss_pred ----------ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC----CCcH
Q 037592 84 ----------FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP----VRNL 149 (337)
Q Consensus 84 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~ 149 (337)
..|+..++.-...|-++....+|++++...+ .++.+.......+-...-++++.+++++-. -|++
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 2355556666667788889999999998877 555555555666667777899999999877 3444
Q ss_pred -HhHHHHHHHHH---hCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHH--HhhcCchhhHHHHHHHHHHhcCCCCC--HH
Q 037592 150 -ITWNSMISGFA---QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA--CSHMGLIDRGRKHFASMTKEYRIKPK--IE 221 (337)
Q Consensus 150 -~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 221 (337)
..|+..+.-+. .....+.|..+|++.++ |++|...-+.-++.+ --+.|....|+.+++++.. ++++. ..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~ 623 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHH
Confidence 35666554443 34578999999999998 677765543333322 2356889999999999843 45544 35
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH-hcCCCchhHHHHHH---HHHhcCCChhHHHHHHHHHHhc-CCC-ccchHHHHHHH
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIEN-ADCRHDSSLWEVLL---GACTTFRNAHVAERVAKKIMEL-KPD-CHLSYVLLDNV 295 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~ 295 (337)
.|+..|.--...--+.....+|++ +..-|+...-...+ ..-.+.|..+.|..++.-..++ +|. ++..|...=..
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~F 703 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEF 703 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHH
Confidence 667666544444344455556665 23445554443333 4467889999999999888884 444 24456676667
Q ss_pred HHHcCCh
Q 037592 296 YRAVGRW 302 (337)
Q Consensus 296 ~~~~g~~ 302 (337)
-.+.|+-
T Consensus 704 EvrHGne 710 (835)
T KOG2047|consen 704 EVRHGNE 710 (835)
T ss_pred HHhcCCH
Confidence 7777873
No 99
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=7.4e-07 Score=68.70 Aligned_cols=259 Identities=15% Similarity=0.072 Sum_probs=150.2
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHc-cc-CChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHh
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKM-LK-KNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAG 95 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 95 (337)
.|+...|+ ++-+.-.|.+..++..-... .. .+...-.-+.++|...|++.....-...-..|.......+......
T Consensus 7 g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~ 84 (299)
T KOG3081|consen 7 GPEDELFN--IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLEL 84 (299)
T ss_pred CcchhHHH--HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhC
Confidence 34444454 55666678888887766554 22 2344444556777777776654443333222332233333333333
Q ss_pred hchhhhh-HHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 96 LAALRLG-KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 96 ~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
-++.++- .++.+.+.......+......-...|++.|++++|++...... +....-.=...+.+..+.+-|.+.+++
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 3344444444333333334444556788888888888887743 333333334455667778888888888
Q ss_pred HHhcCCCCCHhHHHHHHHHHhh----cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh--cC
Q 037592 175 MTEGGTKPDHVSFIGVLSACSH----MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA--DC 248 (337)
Q Consensus 175 m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 248 (337)
|.+. .+..|.+.|..++.+ .+.+..|.-+|+++.. ..+|++.+.+.+..++...|++++|..++++. ..
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 8762 255666666666543 3567788888888843 35788888888887888888888888888764 23
Q ss_pred CCchhHHHHHHHHHhcCCCh-hHHHHHHHHHHhcCCCc
Q 037592 249 RHDSSLWEVLLGACTTFRNA-HVAERVAKKIMELKPDC 285 (337)
Q Consensus 249 ~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~ 285 (337)
..++.+...++.+-...|.. +.-.+...+.....|..
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 33455555555554445544 33445666666666764
No 100
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=4.9e-07 Score=72.57 Aligned_cols=309 Identities=13% Similarity=0.078 Sum_probs=165.2
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc---cCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML---KKNSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
+++-|..+++.-...+-.....+---+..++...|++++|...+..+. .++...+-.|.-++.-.|.+.+|..+-.+
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 356677777776655433333344445677889999999999998873 33455566666666666677777666655
Q ss_pred Hhh---------------cCccc--------------HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHH-HHHH
Q 037592 78 MEE---------------IDLFS--------------FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA-LVDL 127 (337)
Q Consensus 78 ~~~---------------~~~~~--------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 127 (337)
..+ .|..- -.++.......-.+++|+++|.+.+..++ .....|. +.-+
T Consensus 117 a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~--ey~alNVy~ALC 194 (557)
T KOG3785|consen 117 APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP--EYIALNVYMALC 194 (557)
T ss_pred CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh--hhhhhHHHHHHH
Confidence 433 11111 11233333334466777777777766542 2222222 2223
Q ss_pred HHhcCCHHHHHHHHhcCC--------------------------------------------------------------
Q 037592 128 YAKCGCVDFAHQIFLQMP-------------------------------------------------------------- 145 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~-------------------------------------------------------------- 145 (337)
|.+..-++-+.++++--.
T Consensus 195 yyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgAL 274 (557)
T KOG3785|consen 195 YYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGAL 274 (557)
T ss_pred HHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHH
Confidence 344333333333222110
Q ss_pred --CC-----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC-------chhhHHHHHHHHH
Q 037592 146 --VR-----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG-------LIDRGRKHFASMT 211 (337)
Q Consensus 146 --~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~ 211 (337)
-| =+.+-..|+--|.+.++..+|..+.+++.- ..|-......+. +...| .+.-|.+.|+..-
T Consensus 275 qVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG 350 (557)
T KOG3785|consen 275 QVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVG 350 (557)
T ss_pred HhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhc
Confidence 00 011222344456677888888777665421 222222222222 11222 1333444443321
Q ss_pred -----------------------------------HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc---CCCchh
Q 037592 212 -----------------------------------KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD---CRHDSS 253 (337)
Q Consensus 212 -----------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 253 (337)
+..-...|.. -..+.++++..|++.+|+++|-.+. ++ |..
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ik-n~~ 428 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIK-NKI 428 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhH
Confidence 1111111222 2245677778889999999887653 33 444
Q ss_pred HHHH-HHHHHhcCCChhHHHHHHHHHHhcCCCccch-HHHHHHHHHHcCChhhHHHHHHHHHHhCCcc
Q 037592 254 LWEV-LLGACTTFRNAHVAERVAKKIMELKPDCHLS-YVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 254 ~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 319 (337)
+|.+ +..+|...++++.|+.++-++ -.|..... ...+..-|.+++.+--|-+.|+.+...+..|
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 5544 457788999999887776433 23433332 3344567888888888888888887755543
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.96 E-value=1.4e-07 Score=75.17 Aligned_cols=179 Identities=14% Similarity=0.072 Sum_probs=118.9
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHccc--CC-h---hhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcc----cHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLK--KN-S---VSSSALLQGYCQTGDFESVIRIFREMEE--IDLF----SFG 87 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 87 (337)
....+..++..+...|++++|...|+++.. |+ . .++..+..++...|++++|+..++++.+ |+.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 345566677778888888888888887743 22 1 3567777888888888888888888877 5433 244
Q ss_pred HHHHHHHhh--------chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHH
Q 037592 88 IVLRACAGL--------AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF 159 (337)
Q Consensus 88 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 159 (337)
.+..++... |++++|.+.++.+++..+ .+...+..+..... ..... ......+...|
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~~~~~----------~~~~~~~a~~~ 176 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----LRNRL----------AGKELYVARFY 176 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----HHHHH----------HHHHHHHHHHH
Confidence 445555543 677888888888877654 22222222211110 00000 01123566778
Q ss_pred HhCCCHhHHHHHHHHHHhcCC-CC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 160 AQNGRGEEALRIFDDMTEGGT-KP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
...|++++|+..+++..+... .| ....+..+..++...|++++|..+++.+..+
T Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999999887532 12 3457778889999999999999999888543
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.94 E-value=1.8e-07 Score=81.63 Aligned_cols=210 Identities=11% Similarity=-0.008 Sum_probs=155.2
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCH
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRG 165 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 165 (337)
.+...+...|-...|..+++++.. |...+.+|...|+..+|..+..+-. +||+..|..+........-+
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 455666777777777777766543 4557778888888888888776655 56777788887777777777
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 166 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
++|.++.+..-.. +-..+.....+.+++.++.+.++.-++-. +....+|..+..+..+.++++.|.+.|..
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 8888777664321 11122222334688888888888776543 44567888888888889999999988876
Q ss_pred -hcCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 246 -ADCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 246 -~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
....| +...||.+-.+|.+.|+-.+|...+.++.+.+-.+...|...+-...+.|.+++|++.+.++.+.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 33344 56679999999999999999999999999877666778888888888899999999998888754
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.94 E-value=2.6e-07 Score=84.66 Aligned_cols=230 Identities=10% Similarity=0.068 Sum_probs=152.5
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCccc-HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFS-FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
+...|..|+..+...+++++|.++.+...+ |+... |..+...+.+.++...+..+ .+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--------------- 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--------------- 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh---------------
Confidence 567788999999999999999999998777 65554 44444466667776666555 33332
Q ss_pred HHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHH
Q 037592 128 YAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 205 (337)
.....++.-+..+...+. ..+..++..++.+|-+.|+.++|..+|+++.+.. +-|....+.+...|+.. ++++|.+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 222222222222222222 1233467778888888899999999999888865 33667788888888877 8888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh----------------------cCCCchhHHHHHHHHHh
Q 037592 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA----------------------DCRHDSSLWEVLLGACT 263 (337)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------~~~~~~~~~~~l~~~~~ 263 (337)
++..++.. +...+++.++.++|+++ +..--+.++..+-..|.
T Consensus 171 m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~ 234 (906)
T PRK14720 171 YLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYK 234 (906)
T ss_pred HHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 88887643 33333444444444432 22223444555667788
Q ss_pred cCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH-HhCCc
Q 037592 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK-YSGVK 318 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~ 318 (337)
..+++++++.+++.+++.+|.+..+...++.+|. +.+.. ...|++.. -.|+.
T Consensus 235 ~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~ 287 (906)
T PRK14720 235 ALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIG 287 (906)
T ss_pred hhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccc
Confidence 9999999999999999999999999999999887 34444 44444333 33444
No 104
>PLN02789 farnesyltranstransferase
Probab=98.94 E-value=2.2e-06 Score=70.67 Aligned_cols=227 Identities=11% Similarity=0.021 Sum_probs=132.7
Q ss_pred HHHHcCCChhHHHHHHHHHhh--cCcc-cHHHHHHHHHhhc-hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH-
Q 037592 60 QGYCQTGDFESVIRIFREMEE--IDLF-SFGIVLRACAGLA-ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV- 134 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~- 134 (337)
..+...++.++|+.++.++.+ |+.. +|+....++...+ ++++++..++++++.++ .+..+|+...-++.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchh
Confidence 344556677777777777776 3322 3444444555555 46777777777777655 4555666555555555542
Q ss_pred -HHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc---Cc----hhhH
Q 037592 135 -DFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM---GL----IDRG 203 (337)
Q Consensus 135 -~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~----~~~a 203 (337)
++++.+++++. +.+..+|+...-++...|+++++++.++++++.++. +...|+.....+.+. |. .+..
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 55666666665 345667777777777777788888888888776544 444555444333333 22 2345
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCC-----------
Q 037592 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRA----GLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFR----------- 266 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g----------- 266 (337)
..+...++... +-|...|+.+...+... ++..+|.+++.+. ...| ++.....|+..|+...
T Consensus 203 l~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 203 LKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 66665554432 45567777777777663 3345576666653 2222 4455566666665422
Q ss_pred -------ChhHHHHHHHHHHhcCCCccchHH
Q 037592 267 -------NAHVAERVAKKIMELKPDCHLSYV 290 (337)
Q Consensus 267 -------~~~~a~~~~~~~~~~~p~~~~~~~ 290 (337)
..+.|.+++..+.+.+|-....|.
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred ccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 235677777777556666433333
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=5e-07 Score=69.60 Aligned_cols=255 Identities=11% Similarity=0.052 Sum_probs=164.6
Q ss_pred HHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 62 YCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
+.-.|++..++..-..... .+...-..+.++|...|++.....-... |-.|.......+......-++.+.-+.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~----~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKE----GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccc----ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 3345666666665554433 2333444556677777766554433211 112333334334443443444443333
Q ss_pred -HHhcCCCC----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhc
Q 037592 140 -IFLQMPVR----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY 214 (337)
Q Consensus 140 -~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (337)
+.+.+..+ +......-...|+..|++++|++..... . +......=+..+.+..+.+-|.+.++.|..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~-- 165 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQ-- 165 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 33333322 2223333346788999999999998762 1 223333334556788899999999999952
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 215 RIKPKIEHYNCMVDLLGR----AGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
-.+..+.+.|.+++.+ .+.+..|.-+|+++. ..|+..+.+....++...|++++|..++++++..+|+++.+
T Consensus 166 --ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 --IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred --cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 2355677777777664 467999999999984 57888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHH-HHHHHHHhCCccCCCCcceeccccccC
Q 037592 289 YVLLDNVYRAVGRWNDAFK-IRTLMKYSGVKKMPGKSWIEANSKLNH 334 (337)
Q Consensus 289 ~~~l~~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~~~~~~~~~ 334 (337)
...++-+-...|...++.. .+.+.+. ..|.+.||.-.+....
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~----~~p~h~~vk~~~ekea 286 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL----SHPEHPFVKHLNEKEA 286 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh----cCCcchHHHHHHHHHH
Confidence 9999888888888766553 4454443 4466667655544433
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.92 E-value=8.5e-08 Score=69.73 Aligned_cols=106 Identities=8% Similarity=-0.134 Sum_probs=64.0
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCC
Q 037592 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFR 266 (337)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g 266 (337)
.....+...|++++|...|+.++... +.+...+..+..++...|++++|...|++. .. +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 34455566666666666666665321 335566666666666666666666666653 22 234455666666666667
Q ss_pred ChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 267 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
++++|+..|+++++..|+++..+.....+.
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 777777777777666666666555544443
No 107
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.91 E-value=3.5e-06 Score=74.24 Aligned_cols=280 Identities=11% Similarity=0.085 Sum_probs=183.5
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc----CChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK----KNSVSSSALLQGYCQTGDFESVIRIFREM 78 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (337)
.++++.++..++.+ +-|..+...+.--|+..++++.|.+...+... .+...|..|.-.+...+++.+|+.+.+..
T Consensus 461 ~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 461 KKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 46788899998876 33333333355567788899999999888743 36888999999999999999999999988
Q ss_pred hh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHh---------------------h-------CCCCchhHHHHHHH
Q 037592 79 EE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRR---------------------S-------GCKDVIIESALVDL 127 (337)
Q Consensus 79 ~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~ 127 (337)
.. ++ ......-+..-...++.+++......++.. | +.....++..+...
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 77 33 111111122222234444443333322221 0 00112222222221
Q ss_pred HHhc---CCHHHHHHHHhcCCCCc------HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC
Q 037592 128 YAKC---GCVDFAHQIFLQMPVRN------LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198 (337)
Q Consensus 128 ~~~~---g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 198 (337)
.... -..+..+..+.....|+ ...|......+.+.+..++|...+.+..+. .+.....|......+...|
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHH
Confidence 1111 11111111111111233 234666778888999999999999888764 2334455665666777889
Q ss_pred chhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHH
Q 037592 199 LIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAET--LIENA-DCR-HDSSLWEVLLGACTTFRNAHVAER 273 (337)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~ 273 (337)
.+++|.+.|...+ -+.|+ +....++..++.+.|+...|.. ++..+ ... .+...|..+...+.+.|+.+.|.+
T Consensus 699 ~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 699 QLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred hhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 9999999999886 34554 6788899999999998888877 77654 444 467889999999999999999999
Q ss_pred HHHHHHhcCCCccc
Q 037592 274 VAKKIMELKPDCHL 287 (337)
Q Consensus 274 ~~~~~~~~~p~~~~ 287 (337)
.|..+.++.+.+|.
T Consensus 776 cf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 776 CFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhhccCCCc
Confidence 99999998776553
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.91 E-value=2.8e-09 Score=55.85 Aligned_cols=33 Identities=42% Similarity=0.620 Sum_probs=29.8
Q ss_pred cCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc
Q 037592 15 LGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 47 (337)
.|+.||..+|++||++|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 478899999999999999999999999999887
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1e-06 Score=69.16 Aligned_cols=270 Identities=13% Similarity=0.025 Sum_probs=143.6
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc--ccCChhhHHH-HHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSA-LLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 77 (337)
|+++|.+++..-.+++ +.+....+.|..+|-...++..|-..++++ ..|...-|.. -...+-+.+.+..|+.+...
T Consensus 25 ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 25 RYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4567777777766664 337777888899999999999999999998 3343333332 23455577788888888877
Q ss_pred Hhh-cCcccHHHHH--HHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC----CcHH
Q 037592 78 MEE-IDLFSFGIVL--RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV----RNLI 150 (337)
Q Consensus 78 ~~~-~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 150 (337)
|.. ++...-..-+ ......+++..+..+.++.-.. .+..+.+...-...+.|+++.|.+-|+...+ ....
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 755 2211111111 1223445566666665554321 2333444444445566777777776666552 1234
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-------------CCH---------------hHHHHHHHHHhhcCchhh
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTK-------------PDH---------------VSFIGVLSACSHMGLIDR 202 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-------------p~~---------------~~~~~l~~~~~~~~~~~~ 202 (337)
.|+.-+ +..+.|+++.|++...++.+.|++ ||. ..++.-...+.+.|+++.
T Consensus 181 AYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eA 259 (459)
T KOG4340|consen 181 AYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEA 259 (459)
T ss_pred HHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHH
Confidence 454333 334556777777776666665542 111 112222222344566666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH--HHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE--AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
|.+.+-.|..+.....|+.|...+.-+=....-.+. -+.++-+... -...||..++-.|++..-++.|-.++.
T Consensus 260 A~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 260 AQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 666555554443444456665554332222111111 1111212211 123456666666666666666655554
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=1.5e-06 Score=81.19 Aligned_cols=225 Identities=15% Similarity=0.140 Sum_probs=152.6
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhh-c-------CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHH
Q 037592 52 SVSSSALLQGYCQTGDFESVIRIFREMEE-I-------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123 (337)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 123 (337)
...|-..|.-....++.++|.+++++++. . -...|.++++.-...|.-+...++|+++.+.. ....+|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 45566667777777777777777777765 1 11245666665566666677777777777652 33566777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHhhcCc
Q 037592 124 LVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV-SFIGVLSACSHMGL 199 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~ 199 (337)
|...|.+.+++++|.++++.|.+ .....|...+..+.+.++-+.|..++.+..+.=.+-... ...-.+..-.+.|+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 88888888888888888888873 355678888888888888888888888887742221122 23334455567788
Q ss_pred hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh---cCCC--chhHHHHHHHHHhcCCChhHHHHH
Q 037592 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA---DCRH--DSSLWEVLLGACTTFRNAHVAERV 274 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 274 (337)
.+.+..+|+..+..+ +.-...|+..++.-.+.|+.+.++.+|++. +..| --..|...+.---+.|+-..++.+
T Consensus 1616 aeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred chhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 888888888887643 455678888888888888888888888863 2222 234566666666677776666665
Q ss_pred HHHHHh
Q 037592 275 AKKIME 280 (337)
Q Consensus 275 ~~~~~~ 280 (337)
=.++.+
T Consensus 1694 KarA~E 1699 (1710)
T KOG1070|consen 1694 KARAKE 1699 (1710)
T ss_pred HHHHHH
Confidence 555544
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.87 E-value=1.3e-07 Score=68.73 Aligned_cols=109 Identities=8% Similarity=-0.069 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 037592 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 281 (337)
..++++.+ ...|+ .+..+...+...|++++|...|+.. ... .+...|..+..++...|++++|+..|+++.++
T Consensus 13 ~~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34566664 23454 4556788899999999999999984 344 46777888889999999999999999999999
Q ss_pred CCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 282 KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 282 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+|+++..+..++.++...|++++|...|++..+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999887543
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.86 E-value=4.1e-07 Score=69.88 Aligned_cols=115 Identities=10% Similarity=0.017 Sum_probs=65.0
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHH-HhCCC--HhHHH
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGF-AQNGR--GEEAL 169 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~-~~~~~--~~~a~ 169 (337)
.++.+++...+++.++.++ .+...|..+...|...|++++|...|++.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3444555555555555554 556666666666666666666666666554 22445555555542 44454 36666
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 170 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
.++++..+.+.. +...+..+...+.+.|++++|...|+++++
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666654322 344555555556666666666666666644
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=3.4e-06 Score=70.67 Aligned_cols=177 Identities=15% Similarity=0.050 Sum_probs=125.1
Q ss_pred CHHHHHHHHhcCC------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHH
Q 037592 133 CVDFAHQIFLQMP------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206 (337)
Q Consensus 133 ~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 206 (337)
++..+.+.-++++ .|+...+...+.+.........+..++.+-.+ ..-...-|..-+ .+...|.++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHH-HHHHhcccchHHHH
Confidence 3455555666665 34555666666655544444444433333222 122233344333 45567999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
++.++.. .+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.+++.....+|+
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 9998764 3556667777888999999999999999985 45666 445566778899999999999999999999999
Q ss_pred ccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 285 CHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
++..|..|.++|...|+..++....-++..
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999998888877776665543
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=4.1e-06 Score=73.45 Aligned_cols=212 Identities=16% Similarity=0.112 Sum_probs=167.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 037592 56 SALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135 (337)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 135 (337)
..+...+...|-...|+.+|++.. .|..++.+|...|+..+|..+..+.++ -+|+...|..+++.....--++
T Consensus 402 ~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 457788889999999999999874 577889999999999999999988888 3588999999988887777889
Q ss_pred HHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC
Q 037592 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215 (337)
Q Consensus 136 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (337)
+|.++++....+ +-..+.....+.++++++.+.|+.-.+.. +.-..+|.....+..+.+++..|.+.|...+. +
T Consensus 475 kawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L 548 (777)
T KOG1128|consen 475 KAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--L 548 (777)
T ss_pred HHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--c
Confidence 999998766533 22233333345789999999999877742 22456777777777789999999999988863 3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
-+-+...||.+-.+|.+.|+-.+|...+++. +. ..+...|...+....+.|.+++|++.+.++..
T Consensus 549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 3445788999999999999999999999874 22 33455677788888899999999999998876
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=3.4e-06 Score=74.99 Aligned_cols=75 Identities=8% Similarity=0.046 Sum_probs=34.3
Q ss_pred HcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHh
Q 037592 63 CQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142 (337)
Q Consensus 63 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 142 (337)
...|.+++|+.+|.+.+. |..+=..|...|.+++|.++-+.--+. .=..||......+...++.+.|++.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 344555555555555443 223333444455555555543321111 112344444444445555555555555
Q ss_pred cCC
Q 037592 143 QMP 145 (337)
Q Consensus 143 ~~~ 145 (337)
+..
T Consensus 883 K~~ 885 (1416)
T KOG3617|consen 883 KAG 885 (1416)
T ss_pred hcC
Confidence 543
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=1.4e-06 Score=77.34 Aligned_cols=237 Identities=15% Similarity=0.088 Sum_probs=171.8
Q ss_pred chHhHHHHH--HHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh------------cCccc
Q 037592 20 NVVVESSLV--DMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE------------IDLFS 85 (337)
Q Consensus 20 ~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~ 85 (337)
|..|-..++ +.|..-|+.+.|.+-.+.+ .+...|..+...|++.++.+-|.-.+-.|.. .+...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 455555555 4577789999998877665 3567899999999999999999988888865 11133
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC-cHHhHHHHHHHHHhCCC
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGR 164 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 164 (337)
-..+.......|-+++|+.+|++..+.. .|=..|...|.|++|.++-+.-..- =..||.....-+-..++
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 3344455678899999999999887643 3446788899999999987644322 12467677777777888
Q ss_pred HhHHHHHHHHH----------HhcCC---------CCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHH
Q 037592 165 GEEALRIFDDM----------TEGGT---------KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225 (337)
Q Consensus 165 ~~~a~~~~~~m----------~~~~~---------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
.+.|++.|++. +...+ ..|...|......+-..|+.+.|+.+|..+ + -|.+
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-~---------D~fs 943 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-K---------DYFS 943 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-h---------hhhh
Confidence 88888888753 22111 224455666666666788888888888877 3 3556
Q ss_pred HHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
++...|-.|+.++|-++-++-+ |......+...|-..|++.+|..+|.++..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7777888899999988888876 444556677888888999999988887754
No 117
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=2.1e-05 Score=75.54 Aligned_cols=284 Identities=10% Similarity=-0.016 Sum_probs=167.5
Q ss_pred HhcCChHHHHHHHHHccc----CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c--C---c-c----cHHHHHHHHHh
Q 037592 32 GKCGLVDESHRVFDKMLK----KNSVSSSALLQGYCQTGDFESVIRIFREMEE--I--D---L-F----SFGIVLRACAG 95 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~---~-~----~~~~l~~~~~~ 95 (337)
...|+++.+...++.+.. .+..........+...|++++|..++..... + + . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 344555555555554411 1222223344555677888888888877654 1 1 1 0 11122344567
Q ss_pred hchhhhhHHHHHHHHHhhCCCCc----hhHHHHHHHHHhcCCHHHHHHHHhcCC-------CCc--HHhHHHHHHHHHhC
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDV----IIESALVDLYAKCGCVDFAHQIFLQMP-------VRN--LITWNSMISGFAQN 162 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~--~~~~~~l~~~~~~~ 162 (337)
.|+++.|...+++.+..-...+. ...+.+...+...|++++|...+++.. .+. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 78888888888887764221221 234556666778899988888887765 111 23445566777888
Q ss_pred CCHhHHHHHHHHHHhc----CCC--C-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHh
Q 037592 163 GRGEEALRIFDDMTEG----GTK--P-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR-IKP--KIEHYNCMVDLLGR 232 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~ 232 (337)
|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.+.... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999998888776542 211 1 122333444556677999999888887644211 111 23344456667778
Q ss_pred cCChHHHHHHHHHh----cCCCchhHHH-----HHHHHHhcCCChhHHHHHHHHHHhcCCCccc----hHHHHHHHHHHc
Q 037592 233 AGLLEEAETLIENA----DCRHDSSLWE-----VLLGACTTFRNAHVAERVAKKIMELKPDCHL----SYVLLDNVYRAV 299 (337)
Q Consensus 233 ~g~~~~A~~~~~~~----~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~ 299 (337)
.|++++|.+.+++. ........+. ..+..+...|+.+.|..++.......+.... .+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 89999888887764 1111111111 1123345578888888887665542222111 135677788899
Q ss_pred CChhhHHHHHHHHHHh
Q 037592 300 GRWNDAFKIRTLMKYS 315 (337)
Q Consensus 300 g~~~~A~~~~~~m~~~ 315 (337)
|++++|...+++....
T Consensus 705 g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 705 GQFDEAEIILEELNEN 720 (903)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=6.7e-07 Score=80.70 Aligned_cols=160 Identities=15% Similarity=0.114 Sum_probs=121.0
Q ss_pred CCCc-hHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh-----cCcccHH
Q 037592 17 LCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE-----IDLFSFG 87 (337)
Q Consensus 17 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 87 (337)
+.|+ ...|..|...|....+...|.+.|+...+. +..++......|++..+++.|..+.-..-+ .-...|.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 3455 357899999999888999999999998544 566788899999999999999998444333 1122344
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHH-hH--HHHHHHHHhCCC
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI-TW--NSMISGFAQNGR 164 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~--~~l~~~~~~~~~ 164 (337)
...-.+...++...+..-|+..++..+ .|...|..++.+|.++|++..|+++|.+...-++. .| .-..-.-+..|.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK 645 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh
Confidence 555667888999999999999998876 78899999999999999999999999887733222 11 122233466788
Q ss_pred HhHHHHHHHHHHh
Q 037592 165 GEEALRIFDDMTE 177 (337)
Q Consensus 165 ~~~a~~~~~~m~~ 177 (337)
+.+|+..+.....
T Consensus 646 Ykeald~l~~ii~ 658 (1238)
T KOG1127|consen 646 YKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776654
No 119
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=1.2e-08 Score=53.46 Aligned_cols=33 Identities=36% Similarity=0.480 Sum_probs=25.0
Q ss_pred hCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 113 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
|+.||..+|++|+++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777764
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.77 E-value=1e-06 Score=67.91 Aligned_cols=157 Identities=12% Similarity=-0.017 Sum_probs=106.8
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
|... ..+-..+...|+-+....+..+... .|.......+....+.|++..|...++++....+ +|...|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHH
Confidence 3444 5555666677777777777766544 2333444466777777788888887777777655 777788878778
Q ss_pred HHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 128 YAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
|.+.|+++.|..-|.+.. ..++...+.+...|.-.|+.+.|..++......+.. |...-..+.......|+++.|.
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHH
Confidence 888888888777777665 345667777777777778888888887777665333 4444455666667778888777
Q ss_pred HHHHHH
Q 037592 205 KHFASM 210 (337)
Q Consensus 205 ~~~~~~ 210 (337)
++...-
T Consensus 223 ~i~~~e 228 (257)
T COG5010 223 DIAVQE 228 (257)
T ss_pred hhcccc
Confidence 766543
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=4.7e-06 Score=75.78 Aligned_cols=171 Identities=13% Similarity=0.034 Sum_probs=117.5
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV-SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (337)
+...+..|.....+.|++++|..+++...+ ..|+.. ....++..+.+.+++++|...+++.+.. -+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 467777788888888888888888888887 455543 5555667788888888888888888643 24445666777
Q ss_pred HHHHHhcCChHHHHHHHHHhc-CCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhh
Q 037592 227 VDLLGRAGLLEEAETLIENAD-CRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWND 304 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 304 (337)
..++.+.|++++|..+|+++- ..| +..++..+..++...|+.++|...|+++.+...+-...|+.++. +...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 234 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLNA 234 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHHH
Confidence 788888888888888888753 333 35667777788888888888888888888844443455554432 3444
Q ss_pred HHHHHHHHHHhCCccCCCCcceec
Q 037592 305 AFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 305 A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
-...++++.-.+......++.+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~ 258 (694)
T PRK15179 235 DLAALRRLGVEGDGRDVPVSILVL 258 (694)
T ss_pred HHHHHHHcCcccccCCCceeeeeH
Confidence 455666665555544444444443
No 122
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.76 E-value=3.6e-06 Score=74.05 Aligned_cols=139 Identities=14% Similarity=0.287 Sum_probs=79.4
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 168 (337)
.+.+....+.|.+|+.+++.+..... ...-|..+.+.|...|+++.|.++|-+.- .++-.|..|.+.|+|++|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 34445556667777777666655432 23345556667777777777777775432 344456667777777777
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
.++-.+. .|.......|..-..-.-+.|++.+|.++|-.+ | .|+. .|++|-+.|..+..+++.++-
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 7665444 223334444554455555666666666666444 1 2332 245566666666666666553
No 123
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.76 E-value=1.6e-06 Score=76.12 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=84.0
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (337)
.+-...++|.+|+.+++.+..... ...-|..+...|+..|+++.|.++|.+. + .++-.|.+|.+.|+|
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~----~------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA----D------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc----c------hhHHHHHHHhccccH
Confidence 344456677777777777665422 3345666777888888888888877654 2 234456778888888
Q ss_pred HHHHHHHHHh-cCCCchhHHHHHHHHHhcCCChhHHHH-------------HHHHH------Hh----cCCCc-cchHHH
Q 037592 237 EEAETLIENA-DCRHDSSLWEVLLGACTTFRNAHVAER-------------VAKKI------ME----LKPDC-HLSYVL 291 (337)
Q Consensus 237 ~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~-------------~~~~~------~~----~~p~~-~~~~~~ 291 (337)
+.|.++-++. +.......|-+-..-.-++|++.+|++ .|++. ++ ..|+. ..+...
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH 887 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence 8888877663 333333334333333344444443333 33221 11 22221 345666
Q ss_pred HHHHHHHcCChhhHHHHHHHH
Q 037592 292 LDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 292 l~~~~~~~g~~~~A~~~~~~m 312 (337)
+..-|...|+...|...|-+.
T Consensus 888 f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhh
Confidence 677777778888887776554
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=1e-05 Score=62.47 Aligned_cols=151 Identities=15% Similarity=0.038 Sum_probs=69.1
Q ss_pred HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHh
Q 037592 90 LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGE 166 (337)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 166 (337)
...+...|+-+....+..+.....+ .+......++....+.|++..|...|++.. ++|..+|+.+.-+|.+.|+.+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChh
Confidence 3344444444444444444332211 333344444555555555555555555444 334455555555555555555
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037592 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 244 (337)
+|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++..... .-.-|..+-..+..+....|++++|.++..
T Consensus 152 ~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 152 EARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 555555555443111 223334444444445555555555555422 112244444445555555555555555443
No 125
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.2e-07 Score=72.95 Aligned_cols=266 Identities=9% Similarity=-0.034 Sum_probs=175.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhh--cCc-ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 037592 56 SALLQGYCQTGDFESVIRIFREMEE--IDL-FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132 (337)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 132 (337)
......+.+..++..|+..+....+ ||. .-|..-+..+...++++++.--.++-++... .....+...-.++...+
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALS 131 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhH
Confidence 3344567777788888888888887 544 3456666777777777777776665554422 11222333333343344
Q ss_pred CHHHHHHHHh---------------cCC-----CCcHHhHHHH-HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 037592 133 CVDFAHQIFL---------------QMP-----VRNLITWNSM-ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191 (337)
Q Consensus 133 ~~~~A~~~~~---------------~~~-----~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 191 (337)
+..+|.+.++ ... +|...+|..+ ..++...|++++|.+.--..++.... ..+..++
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~---n~~al~v 208 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT---NAEALYV 208 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc---hhHHHHh
Confidence 4444433332 222 2233444444 35667889999999887777664221 2233334
Q ss_pred H--HHhhcCchhhHHHHHHHHHHhcCCCCCHHHH-------------HHHHHHHHhcCChHHHHHHHHH-hcCCC-----
Q 037592 192 S--ACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-------------NCMVDLLGRAGLLEEAETLIEN-ADCRH----- 250 (337)
Q Consensus 192 ~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~~-~~~~~----- 250 (337)
+ ++--.++.+.|...|++.+ ...|+...- ..=..-..+.|++.+|.+.|.+ +++.|
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred cccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 3 3335788999999999886 345553221 1122334678999999999986 45444
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
++..|.....+..+.|+..+|+.-.+++.+++|.....|..-..++...++|++|.+-|++..+..-.+.+..+|...
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A 363 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREA 363 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 445565566678899999999999999999999988899999999999999999999999988776666565555443
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=9.5e-06 Score=73.81 Aligned_cols=139 Identities=9% Similarity=0.075 Sum_probs=100.0
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcc-cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLF-SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
++..+..|.....+.|++++|+.+++...+ ||.. ....++.++.+.+++++|...+++++...+ .+......+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHH
Confidence 466677777777888888888888888877 5544 556667777888888888888888887765 566667777777
Q ss_pred HHhcCCHHHHHHHHhcCCCC---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 037592 128 YAKCGCVDFAHQIFLQMPVR---NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 191 (337)
+.+.|++++|..+|+++..+ +..++..+..++...|+.++|...|++..+. ..|....|+..+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 88888888888888877732 2567777777778888888888888877665 334444444443
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=5.6e-06 Score=76.25 Aligned_cols=199 Identities=11% Similarity=0.032 Sum_probs=137.0
Q ss_pred CCCC-chHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCc-----
Q 037592 16 GLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREMEE---IDL----- 83 (337)
Q Consensus 16 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~----- 83 (337)
+..| +...+..|+..+...+++++|.++.+.... | ....|..+...+.+.++...+..+ .+.. .+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 4455 467899999999999999999999987633 3 234455555567777766666555 3333 222
Q ss_pred --------------ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH
Q 037592 84 --------------FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149 (337)
Q Consensus 84 --------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 149 (337)
.++..+..+|-+.|+.+++..+|+++++..+ .+..+.|.+...|... +.++|++++.+...
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~--- 177 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIY--- 177 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---
Confidence 4667778888888999999999999998874 7888889999888888 99999888876542
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhc-------------------CCCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEG-------------------GTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
.|...+++.++.++|.++... |..--..++-.+-..|....+++++..+++.+
T Consensus 178 --------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 178 --------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred --------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 244445555555555555543 11112233344446677778888999999888
Q ss_pred HHhcCCCCCHHHHHHHHHHHH
Q 037592 211 TKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~ 231 (337)
++.. +.|......++.+|.
T Consensus 250 L~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 250 LEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred HhcC--CcchhhHHHHHHHHH
Confidence 7532 445666677777765
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=7.7e-07 Score=74.90 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=57.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHH
Q 037592 58 LLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 137 (337)
|+..+...++++.|+++++++.+.++.....++..+...++..+|.+++++.++..+ .+..........+.+.++++.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHH
Confidence 334444445555555555555553333444444444444555555555555554432 3344444444555555555555
Q ss_pred HHHHhcCC--CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHH
Q 037592 138 HQIFLQMP--VR-NLITWNSMISGFAQNGRGEEALRIFDDM 175 (337)
Q Consensus 138 ~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 175 (337)
+.+.+++. .| +..+|..|..+|...|+++.|+..++.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555554 23 2335555555555555555555555443
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=7.9e-07 Score=64.17 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=56.7
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhc
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTT 264 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 264 (337)
...+...+...|++++|...++.+.... +.+...+..+...+...|++++|...+++. ...| +...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 3444455556666666666666664321 345556666666666666666666666653 2222 34445555556666
Q ss_pred CCChhHHHHHHHHHHhcCCCc
Q 037592 265 FRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~p~~ 285 (337)
.|+++.|...++++.+..|++
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGEN 118 (135)
T ss_pred cCCHHHHHHHHHHHHHhcccc
Confidence 666666666666666666664
No 130
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.0001 Score=67.45 Aligned_cols=251 Identities=14% Similarity=0.124 Sum_probs=134.0
Q ss_pred HHHHHHHHhcCCC--CchHhHHHHHHHHHhcCChHHHHHHHHHc-ccCCh-----hhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 6 KEVHAKVITLGLC--GNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNS-----VSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 6 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
+++.+..++.+++ .|+...+.-+.++...+-..+-+++++++ .++++ ..-|.|+-...+. +..++.++.++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHH
Confidence 4566777776643 35566677789999999999999999998 34432 2345555555554 44567777777
Q ss_pred HhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhh---------------------CCCCchhHHHHHHHHHhcCCHHH
Q 037592 78 MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS---------------------GCKDVIIESALVDLYAKCGCVDF 136 (337)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~g~~~~ 136 (337)
+-.-|.. .+...+...+-+++|..+|++.-..+ -...+.+|..+..+-.+.|.+.+
T Consensus 1046 LdnyDa~---~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1046 LDNYDAP---DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred hccCCch---hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHH
Confidence 6652211 12333444455555555554321100 01234555666666666666666
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCC
Q 037592 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216 (337)
Q Consensus 137 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (337)
|++-|-+.. |+..|.-.+....+.|.|++-.+++.-..+....|... +.++-+|++.++..+-+.++ .
T Consensus 1123 AieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--------~ 1190 (1666)
T KOG0985|consen 1123 AIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--------A 1190 (1666)
T ss_pred HHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh--------c
Confidence 665554333 44455556666666666666666655555544444333 23455555555544433221 1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
.|+......+.+-|...|.++.|.-+|.. +..|..+...+...|+++.|....+++
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSN------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 24444444444444444555444444432 223455555555555555555544443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=2.8e-05 Score=65.41 Aligned_cols=135 Identities=10% Similarity=-0.017 Sum_probs=66.7
Q ss_pred HHHhcCCHHHHHHHHhcCC--CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhhcCchhh
Q 037592 127 LYAKCGCVDFAHQIFLQMP--VR-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD-HVSFIGVLSACSHMGLIDR 202 (337)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 202 (337)
.+...|++++|+..++.+. .| |+..+......+.+.|+.++|.+.++++... .|+ ......+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3344455555555555544 23 3333344445555555555555555555552 333 2223334455555555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
|+++++..+. ..+-|+..|..|.++|...|+..++..... ..+...|+++.|+..+..+.+
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A---------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA---------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH---------------HHHHhCCCHHHHHHHHHHHHH
Confidence 5555555533 224445555555555555555544443322 234445555555555555554
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.64 E-value=9.7e-07 Score=63.37 Aligned_cols=98 Identities=13% Similarity=0.004 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
+......+..-+...|++++|.++|+-+- .+.+...|-.|..++...|++++|+..|..+..++|+++..+..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34455666777889999999999999752 3445667888888899999999999999999999999999999999999
Q ss_pred HHcCChhhHHHHHHHHHHhC
Q 037592 297 RAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~~ 316 (337)
...|+.+.|.+.|+..+...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 133
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.00012 Score=67.08 Aligned_cols=139 Identities=13% Similarity=0.058 Sum_probs=93.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (337)
.+..|..+..+-.+.|...+|++-|-+. .|+..|..++..+.+.|.+++-.+++.-+.+...+|.. =+.|+-+|++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAk 1178 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAK 1178 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHH
Confidence 3557888888888888888888877655 56677888999999999999988888777776555544 3567888888
Q ss_pred cCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHH
Q 037592 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 205 (337)
.++..+.++++. .|+..-......-|...|.++.|.-+|... .-|..+...+...|++..|..
T Consensus 1179 t~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred hchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHH
Confidence 888887776543 355555555555666666666665555432 223444444445555554443
No 134
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.62 E-value=0.00024 Score=60.76 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=86.5
Q ss_pred hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc---CCC-chhHHHHHHHHHhcCCChhHHHHHH
Q 037592 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD---CRH-DSSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
.+.....+++++......|+ .+|..++..-.+..-++.|+.+|.+.+ ..+ ++...++++.-++ .++.+.|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44555566666544444444 356667777778888899999998864 222 5556666666555 56888999999
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccC
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 320 (337)
+-.+...++++..-...+.-+...++-..|..+|++....++.++
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 999888888777777778888888888889999998888866543
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.60 E-value=2.9e-06 Score=71.47 Aligned_cols=125 Identities=10% Similarity=0.027 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
....|+..+...++++.|+++|+++...++.....++..+...++..+|.+++.+..+.. +-+...+..-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334566777778999999999999997777777788999999999999999999998752 2355555556677889999
Q ss_pred hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc
Q 037592 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 247 (337)
.+.|..+.+++++. .+-+..+|..|..+|...|+++.|+..++.++
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999753 24446799999999999999999999998764
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.59 E-value=5.9e-06 Score=74.90 Aligned_cols=304 Identities=11% Similarity=0.011 Sum_probs=154.7
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCC-----hhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN-----SVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
.+|.+-|+...+.+ ..+........+.|++..++++|..+.-..-+.+ ...|....-.|...++..+|+.-|+.
T Consensus 509 ~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs 587 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS 587 (1238)
T ss_pred HHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH
Confidence 45777777777765 4466778888899999999999888743332111 12233344445556666666666666
Q ss_pred Hhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC--------
Q 037592 78 MEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-------- 146 (337)
Q Consensus 78 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 146 (337)
... .|...|..++.+|...|++..|.++|.++....+ .+...-....-..+..|++.+|...+.....
T Consensus 588 ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP-~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~ 666 (1238)
T KOG1127|consen 588 ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP-LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTG 666 (1238)
T ss_pred HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc-HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 655 3344555566666666666666666655554432 1222222222333445555555555443320
Q ss_pred -Cc-HHhHHHHHHHHHhCCCHhHHHHHHHH-------------------------------------------------H
Q 037592 147 -RN-LITWNSMISGFAQNGRGEEALRIFDD-------------------------------------------------M 175 (337)
Q Consensus 147 -~~-~~~~~~l~~~~~~~~~~~~a~~~~~~-------------------------------------------------m 175 (337)
.+ ..++-.+...+.-.|-..+|.+++++ .
T Consensus 667 q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~ 746 (1238)
T KOG1127|consen 667 QNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQL 746 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 00 00111111111111111111111111 1
Q ss_pred HhcCCCCC--------------------HhHHHHHHHHHhh-------cC-chhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 176 TEGGTKPD--------------------HVSFIGVLSACSH-------MG-LIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 176 ~~~~~~p~--------------------~~~~~~l~~~~~~-------~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
...+..|+ ..+|..+...|.+ .+ +...|+..+...++.. .-+..+|+.|.
T Consensus 747 e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLG 824 (1238)
T KOG1127|consen 747 EKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALG 824 (1238)
T ss_pred HhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHH
Confidence 11111111 1111111111111 11 1123444444443321 22333444433
Q ss_pred HHHHhcCChHHHHHHHHHh--cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhH
Q 037592 228 DLLGRAGLLEEAETLIENA--DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 305 (337)
.....|++.-|...|-+. ..+....+|..+...+.+..+++.|...|.....+.|.+...|......-...|+.-++
T Consensus 825 -Vlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~ 903 (1238)
T KOG1127|consen 825 -VLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIER 903 (1238)
T ss_pred -HhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHH
Confidence 334455666666655442 22334556666666777888888999999888889998888888777777778888888
Q ss_pred HHHHHH
Q 037592 306 FKIRTL 311 (337)
Q Consensus 306 ~~~~~~ 311 (337)
..+|..
T Consensus 904 ~~lfaH 909 (1238)
T KOG1127|consen 904 LILFAH 909 (1238)
T ss_pred HHHHHh
Confidence 887766
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=4.7e-05 Score=58.62 Aligned_cols=166 Identities=14% Similarity=0.097 Sum_probs=111.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--C-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMPV--R-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 197 (337)
|..++-+....|+.+.|...++++.. | +...-..-...+-..|++++|+++++.+.+.+ +.|.+++---+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 33444555666777777777766552 2 22222222233456788889999998888875 33555666555555667
Q ss_pred CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCch-hHHHHHHHHH---hcCCChhHHH
Q 037592 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDS-SLWEVLLGAC---TTFRNAHVAE 272 (337)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~---~~~g~~~~a~ 272 (337)
|+.-+|++-+...++ .+..|...|..+...|...|++++|.-.++++ -..|.. ..+..+...+ +...+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788888888766 44788889999999999999999999999885 344543 3444555442 3344678888
Q ss_pred HHHHHHHhcCCCccchH
Q 037592 273 RVAKKIMELKPDCHLSY 289 (337)
Q Consensus 273 ~~~~~~~~~~p~~~~~~ 289 (337)
+.|.+++++.|.+...+
T Consensus 212 kyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHhChHhHHHH
Confidence 99999999888544433
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=4.6e-06 Score=60.12 Aligned_cols=97 Identities=21% Similarity=0.196 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
......++..+...|++++|.+.|+.. .. +.+...|..+...+...|+++.|...++++.+..|+++..+..++.++.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 345566667777778888888887764 22 2345566667777777788888888888877777777777777788888
Q ss_pred HcCChhhHHHHHHHHHHhC
Q 037592 298 AVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 298 ~~g~~~~A~~~~~~m~~~~ 316 (337)
..|++++|...|++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888887776654
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=3.5e-05 Score=59.30 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=126.9
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHH-HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV-LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (337)
.|..++-+....|+.+-|..+++++... + |.+.-...+ .--+-..|++++|+++++.++++. +.|..++-.=+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHH
Confidence 4555666777889999999999998775 3 444333222 223446799999999999998764 6677777776777
Q ss_pred HHhcCChHHHHHHHHHh--cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC---Chhh
Q 037592 230 LGRAGLLEEAETLIENA--DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG---RWND 304 (337)
Q Consensus 230 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 304 (337)
....|+.-+|++-+.+. ....|...|.-+...|...|++++|.-.++++.=+.|-++..+..+.+.+.-.| +.+.
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788877888776652 244588899999999999999999999999999999999999999998876655 5667
Q ss_pred HHHHHHHHHHhCC
Q 037592 305 AFKIRTLMKYSGV 317 (337)
Q Consensus 305 A~~~~~~m~~~~~ 317 (337)
|.++|.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8888888776544
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.49 E-value=1.1e-05 Score=58.85 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHhh--cCc----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHH
Q 037592 65 TGDFESVIRIFREMEE--IDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCGCVDF 136 (337)
Q Consensus 65 ~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 136 (337)
.++...+...++.+.+ |+. .....+...+...|++++|...|+.+....+.++ ......|..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555 222 1122233445555566666666665555442222 1223334555556666666
Q ss_pred HHHHHhcCCCC--cHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 137 AHQIFLQMPVR--NLITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 137 A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
|+..++....+ ....+......|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666554322 223444455556666666666666554
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.39 E-value=2.3e-05 Score=57.20 Aligned_cols=124 Identities=12% Similarity=0.105 Sum_probs=53.3
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC--HHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPD--HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK--IEHYNCMV 227 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~ 227 (337)
|..++..+ ..++...+...++.+.+...... ......+...+...|++++|...|+.++.. ...|. ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 44444443 25555555555555555422110 112222334445555555555555555432 11111 12233344
Q ss_pred HHHHhcCChHHHHHHHHHhcCC-CchhHHHHHHHHHhcCCChhHHHHHHHH
Q 037592 228 DLLGRAGLLEEAETLIENADCR-HDSSLWEVLLGACTTFRNAHVAERVAKK 277 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 277 (337)
..+...|++++|+..++..... ..+..+......+...|++++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555555555555443211 1222233333445555555555555544
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.39 E-value=6.7e-07 Score=47.42 Aligned_cols=33 Identities=48% Similarity=0.905 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 183 (337)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.38 E-value=1.6e-05 Score=55.80 Aligned_cols=97 Identities=9% Similarity=0.031 Sum_probs=42.5
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc----hhHHHHHHHHH
Q 037592 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD----SSLWEVLLGAC 262 (337)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~ 262 (337)
.+...+.+.|++++|.+.+..++....-.+ ....+..+..++.+.|++++|...|+.+ ...|+ ...+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 344444455555555555555543211000 1223344445555555555555555542 11122 22333344444
Q ss_pred hcCCChhHHHHHHHHHHhcCCCc
Q 037592 263 TTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
.+.|+.+.|...++++.+..|++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCC
Confidence 45555555555555555555543
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.35 E-value=2.4e-06 Score=53.48 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=58.3
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC-ChhhHHHHHHHHHHh
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG-RWNDAFKIRTLMKYS 315 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 315 (337)
++..|..+...+...|++++|+..|+++++.+|+++..|..++.++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678888888999999999999999999999999999999999999999 799999999887764
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.35 E-value=1.2e-06 Score=57.27 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=24.5
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHH
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
+..++.+.|++++|+.++++ .+.+|.+......++.++.+.|++++|+++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 44445555555555555544 33334333344444555555555555555544
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.34 E-value=2.4e-05 Score=54.87 Aligned_cols=95 Identities=13% Similarity=-0.032 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh-cCCCc----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc---cchHHHHH
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIENA-DCRHD----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC---HLSYVLLD 293 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 293 (337)
++..++..+.+.|++++|.+.|+++ ...|+ ...+..+..++.+.|+++.|...++.+....|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566666666666666666654 12222 2234445556666666666666666666655553 33455666
Q ss_pred HHHHHcCChhhHHHHHHHHHHhC
Q 037592 294 NVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.++.+.|++++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666666666666666666654
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.33 E-value=9.4e-06 Score=54.07 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 223 YNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
+..++..+...|++++|...+++. ...| +...+..+...+...|+++.|.+.+++.....|.+...+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566666777777777777763 2233 23455566666777778888888888877777776667777777888888
Q ss_pred ChhhHHHHHHHHHH
Q 037592 301 RWNDAFKIRTLMKY 314 (337)
Q Consensus 301 ~~~~A~~~~~~m~~ 314 (337)
++++|...+++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888887776654
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.32 E-value=1.3e-06 Score=46.00 Aligned_cols=33 Identities=39% Similarity=0.757 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCC
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 182 (337)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 149
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.27 E-value=8.4e-05 Score=60.61 Aligned_cols=132 Identities=16% Similarity=0.243 Sum_probs=94.1
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHH-HhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA-CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (337)
.+|..++....+.+..+.|..+|.+..+.+. .+...|...+.. +...++.+.|.++|+..++.. +.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 4677788888888889999999999875422 233444444433 233566777999999987754 667778888888
Q ss_pred HHHhcCChHHHHHHHHHh-cCCCc----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 229 LLGRAGLLEEAETLIENA-DCRHD----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
.+...|+.+.|+.+|++. ..-|. ...|...+..-.+.|+.+.+.++.+++.+..|+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 888999999999999874 22232 347888888888889999999999888887776
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.27 E-value=1.2e-05 Score=60.56 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 255 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
+..+...+...|++++|...++++.+..|++...+..++.++...|
T Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 120 (172)
T PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 3333444444444444444444444444444444444444444433
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.26 E-value=5.2e-06 Score=54.22 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=31.7
Q ss_pred CCHhHHHHHHHHHHhcCCC-CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 163 GRGEEALRIFDDMTEGGTK-PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.. +.. +.+......++.++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~~--~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KLD--PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-THH--HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CCC--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555443221 12222333444445555555555555441 111 1112222333444455555555555
Q ss_pred HHH
Q 037592 242 LIE 244 (337)
Q Consensus 242 ~~~ 244 (337)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 152
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.25 E-value=1.4e-05 Score=65.80 Aligned_cols=129 Identities=12% Similarity=0.035 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHH---HhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH-------hcC-CCchh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMT---KEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIEN-------ADC-RHDSS 253 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~-~~~~~ 253 (337)
.|..+.+.|.-.|+++.|+...+.-+ +++|-.. ....+..+..++.-.|+++.|.+.|+. ++. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444444555566666665554321 2222221 134555666666667777777766653 221 12334
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcC------CCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELK------PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+..+|...|.-..++++|+.++.+-+.+. -....++..|..+|...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45556666666666677766665544311 11234666677777777777777666655443
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.25 E-value=5.1e-06 Score=51.26 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=47.6
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+...+.+.|++++|+..|+++++..|+++..+..++.++...|++++|...|+++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34567788888888888888888888888888888888888888888888888887644
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.4e-05 Score=60.58 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHH-h--cCCChhHHHHHHHHHHhcCCCccchHHH
Q 037592 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGAC-T--TFRNAHVAERVAKKIMELKPDCHLSYVL 291 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~-~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 291 (337)
+-|...|..|...|...|+.+.|..-|.+. .. .+++..+..+..++ . ......++..++++++..+|++..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 667899999999999999999999999874 22 23444455555552 2 3334678899999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 292 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
|...+...|++.+|...|+.|.+.....+|..+.|+-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 9999999999999999999999988877776665543
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.23 E-value=1.2e-05 Score=67.90 Aligned_cols=104 Identities=13% Similarity=-0.000 Sum_probs=85.4
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCC
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRN 267 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 267 (337)
-...+...|+++.|+..|+++++.. +.+...|..+..+|...|++++|+..+++. ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3456677899999999999997643 456788889999999999999999999974 4444 56678888889999999
Q ss_pred hhHHHHHHHHHHhcCCCccchHHHHHHH
Q 037592 268 AHVAERVAKKIMELKPDCHLSYVLLDNV 295 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 295 (337)
++.|+..|++++++.|+++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999987665555444
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.21 E-value=3.3e-06 Score=44.37 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHhCCcc
Q 037592 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 319 (337)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999999886
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.16 E-value=0.00016 Score=54.43 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=85.5
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHH
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD--HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (337)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++++... +.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 34566777777888888888888888876533332 3466667777888888888888888886532 3345666667
Q ss_pred HHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
..++...|+...+..-++.. ...+++|.++++++.+.+|++ |..++.-+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 77777777766555433321 012577788888888888885 4455555544443
No 158
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.16 E-value=0.0029 Score=52.38 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (337)
.+.+..+.-+...|+...|.++-.+. .+ |+...|...+.+|+..++|++-.++... + -.+..|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-k--KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS-K--KSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-C--CCCCChHHHHHHHHH
Confidence 34555566677888888887776554 44 8888999999999999999998887654 2 244669999999999
Q ss_pred CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998888761 124667888999999999766433
No 159
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=5.1e-06 Score=43.91 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHhCCccC
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 320 (337)
+|+.++.+|.+.|++++|.++|++|.+.|+.|+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999999875
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.15 E-value=5e-05 Score=56.97 Aligned_cols=94 Identities=14% Similarity=-0.118 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 293 (337)
....+..++..+...|++++|...|++. ...|+ ..++..+...+...|++++|+..++++.++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777788888888888888864 22222 346777778889999999999999999998888877787777
Q ss_pred HHHH-------HcCChhhHHHHHHHH
Q 037592 294 NVYR-------AVGRWNDAFKIRTLM 312 (337)
Q Consensus 294 ~~~~-------~~g~~~~A~~~~~~m 312 (337)
..+. ..|++++|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 7777 778888776666554
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.15 E-value=0.0001 Score=62.35 Aligned_cols=102 Identities=9% Similarity=0.001 Sum_probs=81.6
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
....+...|++++|+..|+++++.... +...|..+..++...|++++|+..+++++... +.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 456677889999999999999986432 56677778889999999999999999997542 446778889999999999
Q ss_pred ChHHHHHHHHH-hcCCCchhHHHHHH
Q 037592 235 LLEEAETLIEN-ADCRHDSSLWEVLL 259 (337)
Q Consensus 235 ~~~~A~~~~~~-~~~~~~~~~~~~l~ 259 (337)
++++|...|++ +...|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999997 45566655444444
No 162
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.0042 Score=56.60 Aligned_cols=220 Identities=11% Similarity=0.051 Sum_probs=100.5
Q ss_pred HcCCChhHHHHHHHHHhh--cCcccHHHHHHH--HHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHH
Q 037592 63 CQTGDFESVIRIFREMEE--IDLFSFGIVLRA--CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138 (337)
Q Consensus 63 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 138 (337)
...+++.+|+....++.+ |+. .|..++.+ ..+.|..++|..+++.....+. .|..+...+-.+|.+.|+.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHH
Confidence 345566666666666655 333 22233333 3455666666655555544443 35556666666666666666666
Q ss_pred HHHhcCCC--CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC-c---------hhhHHHH
Q 037592 139 QIFLQMPV--RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG-L---------IDRGRKH 206 (337)
Q Consensus 139 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~---------~~~a~~~ 206 (337)
.+|++... |+..-...+..+|.+.+.+.+-.++--++-+. .+-+...|-+++......- . ..-|.+.
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 66666652 33333344445555555554443333333332 2222233333332222110 0 1224444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hc-C--CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 037592 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-AD-C--RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282 (337)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~-~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 282 (337)
.+.++++.|.--+..-..-....+...|.+++|.+++.. .. . ..+...-+.-+..+...+++.+..++..++....
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 444444432111111111122233445566666666532 21 1 1112222333444555666666666666666655
Q ss_pred CCc
Q 037592 283 PDC 285 (337)
Q Consensus 283 p~~ 285 (337)
+++
T Consensus 257 ~Dd 259 (932)
T KOG2053|consen 257 NDD 259 (932)
T ss_pred Ccc
Confidence 554
No 163
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.0035 Score=57.09 Aligned_cols=212 Identities=15% Similarity=0.094 Sum_probs=142.9
Q ss_pred HhcCChHHHHHHHHHcccCChh-hHHHHHH--HHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHHhhchhhhhHHH
Q 037592 32 GKCGLVDESHRVFDKMLKKNSV-SSSALLQ--GYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEV 105 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 105 (337)
...+++..|.....++.+..+. .|...+. ...+.|+.++|..+++.... .|..|...+-.+|...++.++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4678899999998888443222 2333333 35789999999998888776 5667888899999999999999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCHHH----HHHHHhcCCCCcHHhHHHHHHHHHhCC-C---------HhHHHHH
Q 037592 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDF----AHQIFLQMPVRNLITWNSMISGFAQNG-R---------GEEALRI 171 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~ 171 (337)
|++..+.. |+......+..+|.+.+.+.+ |.++++... .+...+.+.++.+.+.- . ..-|.+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 99998874 557777888889999988765 566666444 34455555555555432 1 2335556
Q ss_pred HHHHHhcC-CCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 172 FDDMTEGG-TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 172 ~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
++.+.+.+ .--+..-.......+...|.+++|..++..-....-.+-+...-+.-+..+...+++.+..++-.++
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66666554 1112222222334456788999999999543333233344445556677888889998887776654
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=0.00025 Score=62.77 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 253 SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 253 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
..+..+.......|++++|...++++.+++|+ ...|..++.++...|+.++|.+.+++..+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444433334445555555555555555554 45555555555555555555555555444
No 165
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.13 E-value=0.00013 Score=60.24 Aligned_cols=252 Identities=12% Similarity=0.037 Sum_probs=153.5
Q ss_pred HHHHhcCChHHHHHHHHHcccCC-------hhhHHHHHHHHHcCCChhHHHHHHHHHhh---------cCcccHHHHHHH
Q 037592 29 DMYGKCGLVDESHRVFDKMLKKN-------SVSSSALLQGYCQTGDFESVIRIFREMEE---------IDLFSFGIVLRA 92 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~ 92 (337)
.-+++.|+...-+.+|+..++.. ...|..|..+|.-.+++++|+++...=.. -...+...|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 45788888888888888875542 23356666666667777777776543221 112233344445
Q ss_pred HHhhchhhhhHHHHHHHHH----hhCC-CCchhHHHHHHHHHhcCC--------------------HHHHHHHHhcCC--
Q 037592 93 CAGLAALRLGKEVHCQYIR----RSGC-KDVIIESALVDLYAKCGC--------------------VDFAHQIFLQMP-- 145 (337)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~-- 145 (337)
+-..|.+++|...-.+-+. .|-. .....+..+...|...|+ ++.|.++|.+-.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666544322221 1111 224455557777766554 223333333211
Q ss_pred -----C--CcHHhHHHHHHHHHhCCCHhHHHHHHHHHH----hcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 146 -----V--RNLITWNSMISGFAQNGRGEEALRIFDDMT----EGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 146 -----~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
. .-...|..|.+.|.-.|+++.|+..-+.-+ +.|-+. ....+..+.+++.-.|+++.|.+.|+..+.-
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 0 112456677777777889999987655322 223221 2346677788888889999999988875321
Q ss_pred ---cC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHH-------hc-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 214 ---YR-IKPKIEHYNCMVDLLGRAGLLEEAETLIEN-------AD-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 214 ---~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
.| -........+|...|.-..++++|+.++.+ ++ ..-....+-+|..++...|..++|+.+.+..++
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11 122345667788888888889999988764 22 122456677888889999999999988877765
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.11 E-value=0.00046 Score=56.54 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=41.7
Q ss_pred HHHHHHHhC-CCHhHHHHHHHHHHhc----CCCCC--HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC----CCCCH-H
Q 037592 154 SMISGFAQN-GRGEEALRIFDDMTEG----GTKPD--HVSFIGVLSACSHMGLIDRGRKHFASMTKEYR----IKPKI-E 221 (337)
Q Consensus 154 ~l~~~~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~-~ 221 (337)
.+...|... |++++|++.|++..+. | .+. ...+..+...+.+.|++++|.++|+++....- .+.+. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 344555555 5666666666655432 1 111 12344455556666666666666666543210 01111 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
.+...+-++...|++..|.+.+++
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222333345556666666666665
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=8.1e-05 Score=58.89 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=68.8
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcC
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAG 234 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 234 (337)
.-..+.+++.+|+..|.+.++. .| |.+.|..-..+|++.|.++.|++-.+..+. +.|. ..+|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 4456778888888888888774 44 444555566778888888888877777653 3443 567778888888888
Q ss_pred ChHHHHHHHHH-hcCCCchhHHHHHH
Q 037592 235 LLEEAETLIEN-ADCRHDSSLWEVLL 259 (337)
Q Consensus 235 ~~~~A~~~~~~-~~~~~~~~~~~~l~ 259 (337)
++++|.+.|++ +.+.|+-.+|-.=+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 88888888876 56677666655444
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.09 E-value=0.0015 Score=48.23 Aligned_cols=134 Identities=9% Similarity=0.021 Sum_probs=103.3
Q ss_pred CCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCCc---hhHH
Q 037592 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD-CRHD---SSLW 255 (337)
Q Consensus 180 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~ 255 (337)
..|+...-..+..+..+.|+..+|...|++.+.. -+..|......+.++....+++..|...++++. .+|. +.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4567666677888899999999999999998542 345677888888889999999999999998753 2232 2234
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 256 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
-.+...+...|++..|+..|+.+....|+ +..-......+.++|+.++|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 44557789999999999999999998888 677777778888899888887666655543
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=6.9e-05 Score=49.72 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
+..+...+...|++++|...++++.+... .+...+..+...+...++++.|.+.++..... .+.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 34445555555666666666665554321 12234444445555555566666555555332 1223334445555555
Q ss_pred hcCChHHHHHHHHH
Q 037592 232 RAGLLEEAETLIEN 245 (337)
Q Consensus 232 ~~g~~~~A~~~~~~ 245 (337)
..|++++|...+++
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 55555555555544
No 170
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.08 E-value=0.00093 Score=51.77 Aligned_cols=167 Identities=12% Similarity=0.035 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--C----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh
Q 037592 123 ALVDLYAKCGCVDFAHQIFLQMPV--R----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 196 (337)
.....+...|++++|...|+++.. | -..+...++.++.+.|++++|...+++..+.-+.-....+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344455666666666666666651 1 1234445666677777777777777776654222111112222222111
Q ss_pred c-------------CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 037592 197 M-------------GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263 (337)
Q Consensus 197 ~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 263 (337)
- +....|... +..++.-|=...-..+|...+..+...-... --.+...|.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~la~~-e~~ia~~Y~ 152 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNRLAEH-ELYIARFYY 152 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 1 111222233 3333444444444555555544432111111 112446689
Q ss_pred cCCChhHHHHHHHHHHhcCCCcc---chHHHHHHHHHHcCChhhHH
Q 037592 264 TFRNAHVAERVAKKIMELKPDCH---LSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 306 (337)
+.|.+..|..-++.+++..|+++ .+...++.+|.+.|..+.|.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999999988864 35678888999999887554
No 171
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.07 E-value=6e-06 Score=42.26 Aligned_cols=30 Identities=53% Similarity=0.891 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCC
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGT 180 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 180 (337)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.06 E-value=0.0001 Score=53.18 Aligned_cols=89 Identities=10% Similarity=0.037 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 037592 53 VSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129 (337)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (337)
.....+...+...|++++|.++|+-+.. | +..-|..|..++-..|++++|+..|..+....+ .++..+..+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3334444445555555555555555544 2 222334444444455555555555555555443 44444445555555
Q ss_pred hcCCHHHHHHHHh
Q 037592 130 KCGCVDFAHQIFL 142 (337)
Q Consensus 130 ~~g~~~~A~~~~~ 142 (337)
..|+.+.|++.|+
T Consensus 115 ~lG~~~~A~~aF~ 127 (157)
T PRK15363 115 ACDNVCYAIKALK 127 (157)
T ss_pred HcCCHHHHHHHHH
Confidence 5555555555544
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.06 E-value=0.00081 Score=53.55 Aligned_cols=176 Identities=12% Similarity=0.070 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC--CCcH-H---hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP--VRNL-I---TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
+......+...|++++|.+.|+++. .|+. . ..-.++.+|.+.+++++|...+++..+..+.-....+...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3334555666777777777777776 2222 1 22345667777888888888888777753222222232333332
Q ss_pred hh--cC---------------c---hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhH
Q 037592 195 SH--MG---------------L---IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254 (337)
Q Consensus 195 ~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 254 (337)
+. .+ + ...|+..|+.+++.+ |+ ..-..+|...+..+...--..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~- 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKY- 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHH-
Confidence 21 11 1 123444444444331 22 222334443333322111111
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCc---cchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDC---HLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 255 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
--.+..-|.+.|.+..|..-++.+++..|++ ..+...++.+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1133456889999999999999999977775 3467788899999999999998876654
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.04 E-value=0.0051 Score=50.93 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=141.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcc-cHHHHHHHHHhhchhh
Q 037592 23 VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-IDLF-SFGIVLRACAGLAALR 100 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~ 100 (337)
+|..+...-...|+.+-|..+++.=+.+. .-+..+.+.|+.+.|+ .+..+ -|.. +|..++..-....
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~~-----~qVplLL~m~e~e~AL---~kAi~SgD~DLi~~vLl~L~~~l~--- 70 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEPRAS-----KQVPLLLKMGEDELAL---NKAIESGDTDLIYLVLLHLKRKLS--- 70 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCChH-----HHHHHHhcCCchHHHH---HHHHHcCCccHHHHHHHHHHHhCC---
Confidence 46667777788999999999886543321 1233445555555552 22222 2222 2333332211111
Q ss_pred hhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-C
Q 037592 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG-G 179 (337)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~ 179 (337)
..-|..++... |.. ..+...|++..+.+.-..+|.+-..........+-.++.. .+.+.-...+....+. +
T Consensus 71 --~s~f~~il~~~--p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~a~~~y~ 142 (319)
T PF04840_consen 71 --LSQFFKILNQN--PVA---SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQAQKLYS 142 (319)
T ss_pred --HHHHHHHHHhC--cch---HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHH
Confidence 11122333322 221 2345566666666666666654433222333333333332 3444444444433321 0
Q ss_pred CCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHH
Q 037592 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259 (337)
Q Consensus 180 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 259 (337)
-..+......++.-.. +-.++-+++.+..+......+.+..+.-+...|+...|.++-.+.++ |+...|...+
T Consensus 143 ~~k~~~f~~~~~e~q~------~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki 215 (319)
T PF04840_consen 143 KSKNDAFEAKLIEEQI------KLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKI 215 (319)
T ss_pred hcchhHHHHHHHHHHH------HHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHH
Confidence 1111111112221111 11122222222223222233445556777889999999999998876 6888999999
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
.+++..+++++..++... . .+|..|...+.+|.+.|+..+|..++.+
T Consensus 216 ~aLa~~~~w~eL~~fa~s---k--KsPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 216 KALAENKDWDELEKFAKS---K--KSPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHhcCCHHHHHHHHhC---C--CCCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999998887542 2 2368899999999999999999999877
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=2.5e-05 Score=61.71 Aligned_cols=109 Identities=15% Similarity=0.021 Sum_probs=86.8
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCc-hhHHHHHHHHHhcCCChhH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHD-SSLWEVLLGACTTFRNAHV 270 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~ 270 (337)
-..+.+++.+|+..|.++++- .+.|...|..=..+|.+.|.++.|++-.+. +.+.|. ..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456778999999999999742 244566677778899999999999988776 455554 5688999999999999999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHcCChh
Q 037592 271 AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303 (337)
Q Consensus 271 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 303 (337)
|++.|+++++++|++......|-.+-.+.+...
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999998766666666666666555
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.02 E-value=9.3e-06 Score=50.60 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=41.0
Q ss_pred hcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.+.|++++|++.|+++.+..|++...+..++.+|.+.|++++|..+++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3567788888888888888887777777888888888888888888777665443
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.02 E-value=0.0004 Score=56.87 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHhcCC-----CCc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-----CCH
Q 037592 120 IESALVDLYAKC-GCVDFAHQIFLQMP-----VRN----LITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-----PDH 184 (337)
Q Consensus 120 ~~~~l~~~~~~~-g~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~ 184 (337)
++..+...|... |++++|++.|++.. ... ...+..++..+.+.|++++|.++|++....... ++.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455556665 67777777666654 111 234556677788888888888888887654221 111
Q ss_pred h-HHHHHHHHHhhcCchhhHHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHh--cCChHHHHHHHHHhc
Q 037592 185 V-SFIGVLSACSHMGLIDRGRKHFASMTKEY-RIKPK--IEHYNCMVDLLGR--AGLLEEAETLIENAD 247 (337)
Q Consensus 185 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 247 (337)
. .+...+-++...|+...|.+.+++..... ++..+ ......|+.++-. ...++.|..-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1 22223335556788888888888774221 22222 3445566666643 234566666666553
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.02 E-value=2.8e-05 Score=49.21 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=50.8
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
..|.+.++++.|.+++++++..+|+++..+...+.++...|++++|...+++..+.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 46778889999999999999999998888888999999999999999999988876653
No 179
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.97 E-value=0.00024 Score=47.69 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCC-CCCHhHHHHHHHHHhhcC--------chhhHHHHHHHHHHhcCCCCCHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGT-KPDHVSFIGVLSACSHMG--------LIDRGRKHFASMTKEYRIKPKIE 221 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 221 (337)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|+.. +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344566677777999999999999999999 899999999998877542 344677888888655 8999999
Q ss_pred HHHHHHHHHHh
Q 037592 222 HYNCMVDLLGR 232 (337)
Q Consensus 222 ~~~~l~~~~~~ 232 (337)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.97 E-value=4.6e-05 Score=46.93 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=40.4
Q ss_pred HHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 226 MVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
+...+...|++++|.+.|+++ ...| +...+..+..++...|++++|...|+++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 455667777777777777764 3334 45556666677777778888887777777777775
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.96 E-value=0.0057 Score=48.73 Aligned_cols=189 Identities=12% Similarity=0.065 Sum_probs=94.8
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccH----HHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSF----GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 124 (337)
+...+......+...|++++|.+.|+++.. |+.... ..++.++.+.+++++|...+++.++..+.....-+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 444444555566778888888888888877 554322 34556677788888888888888877654333333222
Q ss_pred HHHHHhcCCHHHHHHHHhcC---C--CCcH-------HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 037592 125 VDLYAKCGCVDFAHQIFLQM---P--VRNL-------ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192 (337)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~---~--~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 192 (337)
+.+.+.... ....|... . ..|. ..+..++.-|=.+.-..+|...+..+... + -..- ..+..
T Consensus 111 ~~g~~~~~~---~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~-l--a~~e-~~ia~ 183 (243)
T PRK10866 111 MRGLTNMAL---DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR-L--AKYE-LSVAE 183 (243)
T ss_pred HHHHhhhhc---chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-H--HHHH-HHHHH
Confidence 322221000 00011111 0 0111 12333444444444444444433333221 0 0011 12445
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
.|.+.|.+..|..-++.+++...-.| .......++.+|...|..++|..+...+
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 56666666666666666665432211 2344455566666666666666655443
No 182
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.95 E-value=0.0075 Score=49.92 Aligned_cols=281 Identities=14% Similarity=0.078 Sum_probs=184.1
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHc---ccCChhhHHHHHH--HHHcCCChhHHHHHHHHHhh-cCccc--HHHHHHHH
Q 037592 24 ESSLVDMYG--KCGLVDESHRVFDKM---LKKNSVSSSALLQ--GYCQTGDFESVIRIFREMEE-IDLFS--FGIVLRAC 93 (337)
Q Consensus 24 ~~~l~~~~~--~~~~~~~A~~~~~~~---~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~l~~~~ 93 (337)
|..|-..+. ..|+-..|.++-.+. +..|....-.++. +-.-.|+++.|.+-|+.|.. |.... ...|.-..
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleA 164 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHH
Confidence 444444443 457888888777665 3445555555543 44567999999999999987 43322 22333344
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCcHH--hHHHHHHHHH---hCC
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-----VRNLI--TWNSMISGFA---QNG 163 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~ 163 (337)
.+.|+.+-|.++-+..-...+ .-.-.+...+...+..|+|+.|+++++.-. .++.. .--.|+.+-. -..
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 567888888888887776654 335566778899999999999999998765 34432 1122222111 123
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHH-HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH--H
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIG-VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA--E 240 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~ 240 (337)
+...|...-.+..+ +.|+..--.. -..++.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+.... .
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdta~dRlk 316 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDTALDRLK 316 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCcHHHHHH
Confidence 56777776666555 5666554333 347788999999999999999754 566655543 234556653322 1
Q ss_pred HH--HHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH-HcCChhhHHHHHHHHHH
Q 037592 241 TL--IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR-AVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 241 ~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 314 (337)
+. ++.|+ +.+..+.-.+..+....|++..|..-.+.+....|. ...|..|.+.-. ..|+-.++...+-+-.+
T Consensus 317 Ra~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 317 RAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 11 22232 234556666778888999999999999999899999 678888877654 44898888887765544
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.94 E-value=0.00067 Score=60.09 Aligned_cols=140 Identities=10% Similarity=0.022 Sum_probs=99.6
Q ss_pred CCcHHhHHHHHHHHHh--C---CCHhHHHHHHHHHHhcCCCCCH-hHHHHHHHHHhhcC--------chhhHHHHHHHHH
Q 037592 146 VRNLITWNSMISGFAQ--N---GRGEEALRIFDDMTEGGTKPDH-VSFIGVLSACSHMG--------LIDRGRKHFASMT 211 (337)
Q Consensus 146 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 211 (337)
..+...|...+++... . ++..+|..+|++..+. .|+. ..+..+..++.... ++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3467888888877543 2 2377999999999984 5654 34444444343221 1233444444432
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 287 (337)
.....+.++..+..+.......|++++|...+++ +...|+...|..+...+...|++++|...++++..++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2112344567788887777788999999999997 456788888999999999999999999999999999999653
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.92 E-value=0.0028 Score=46.84 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=80.8
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhcCC----CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC---CCCCHhHH
Q 037592 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMP----VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG---TKPDHVSF 187 (337)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~ 187 (337)
.|+......|..+..+.|+..+|...|++.. ..|......+.++....+++..|...++++.+.. ..|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 3566666667777777777777777777765 3466666677777777777777777777776642 2232 33
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
..+...+...|....|..-|+.++ ..-|+..........+.++|+.++|..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 445566777777777777777775 2356655555555667777766665543
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.92 E-value=0.00022 Score=53.49 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=28.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhh--cCc----ccHHHHHHHHHhhchhhhhHHHHHHHHHh
Q 037592 54 SSSALLQGYCQTGDFESVIRIFREMEE--IDL----FSFGIVLRACAGLAALRLGKEVHCQYIRR 112 (337)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (337)
.|..++..+...|++++|+..|++... ++. .++..+..++...|++++|...+++.+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455555555555555555555543 221 13444444444555555555555544443
No 186
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=2.1e-05 Score=40.21 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+|+.++.+|.+.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577788888888888888888888877764
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00056 Score=55.82 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh-cCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHh
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK-CGCVDFAHQIFLQMP---VRNLITWNSMISGFAQ 161 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 161 (337)
|..+++...+.+..+.|..+|.++++.+. .+..+|...+..-.+ .++.+.|..+|+... ..+...|...+..+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 44455555555555555555555553221 233444443333222 344444555555554 3344555555555555
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCH---hHHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDH---VSFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
.|+.+.|..+|++.... +.++. ..|...+..-.+.|+++.+.++.+++.
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555443 22221 245555555555555555555555553
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.85 E-value=0.00012 Score=45.51 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=39.1
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
.+.|++++|.++++++....+ .+..++..++.+|.+.|++++|..+++++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788888888888887765 467777778888888888888888888877
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=97.85 E-value=0.00031 Score=51.00 Aligned_cols=89 Identities=13% Similarity=-0.013 Sum_probs=62.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChh
Q 037592 226 MVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 303 (337)
...-+...|++++|..+|.-+- ..-+...|..|..++...+++++|+..|..+..+.++++..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444556777777777777532 23345556666677777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHH
Q 037592 304 DAFKIRTLMKY 314 (337)
Q Consensus 304 ~A~~~~~~m~~ 314 (337)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777776665
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.84 E-value=0.00029 Score=59.97 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=60.3
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhcCC-CC-----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHH
Q 037592 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMP-VR-----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189 (337)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 189 (337)
.+......+++......+++.+..++-+.. .| -..|..++++.|...|..++++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 344444555555555555555655555544 11 122344666666666666666666666666666666666666
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHH
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (337)
+++.+.+.|++..|.++...|..+ +...++.++.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~ 177 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQA 177 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHH
Confidence 666666666666666666655433 3334444443
No 191
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.82 E-value=0.014 Score=50.38 Aligned_cols=142 Identities=12% Similarity=0.087 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHhh----cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCC-CchhHHHHHHHHHhcCCHHHHHHHHh
Q 037592 68 FESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFL 142 (337)
Q Consensus 68 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 142 (337)
.+...+.++++.. .-..+|...+..-.+..-+..|..+|.++.+.+..+ .+.+.++++..|+ +++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 4445555555544 112245555555555566666666666666655544 4555555555544 355556666665
Q ss_pred cCC--CCc-HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH--hHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 143 QMP--VRN-LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH--VSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 143 ~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
--. -+| +.--...+.-+...|+-..+..+|++....+++|+. ..|..++..-+.-|++..+.++-++.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 443 122 222334445555556666666666666655444433 35666665555666666666555554
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.81 E-value=0.0017 Score=45.09 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=60.1
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH--hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCC-CCCHHHHHHHHHHH
Q 037592 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDH--VSFIGVLSACSHMGLIDRGRKHFASMTKEYRI-KPKIEHYNCMVDLL 230 (337)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 230 (337)
.+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....+.- +.+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3455667778888888888888887765442 34455667777888888888888887654211 01223333445567
Q ss_pred HhcCChHHHHHHHHH
Q 037592 231 GRAGLLEEAETLIEN 245 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~ 245 (337)
...|+.++|...+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 778888888877654
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.78 E-value=0.00015 Score=45.16 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCC-ChhHHHHHHHHHHhcCC
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFR-NAHVAERVAKKIMELKP 283 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 283 (337)
..+|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666666677777777777777652 2222 4455666666677776 57777777777776665
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.75 E-value=0.00062 Score=54.67 Aligned_cols=99 Identities=10% Similarity=0.046 Sum_probs=52.4
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCCc----hhHHHHHHH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENAD-CRHD----SSLWEVLLG 260 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~ 260 (337)
|...+....+.|++++|...|+.+++.+.-.+ .+..+..++..|...|++++|...|+.+- ..|+ ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666655421110 02455556666666666666666666541 1121 222333344
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
.+...|+.+.|...|+++++..|++
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 5556666666666666666666663
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.74 E-value=0.012 Score=45.63 Aligned_cols=173 Identities=12% Similarity=0.083 Sum_probs=72.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh--cCcc----cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE--IDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (337)
....+...|++.+|.+.|+.+.. |+.. +...++.++.+.|+++.|...+++.++.-+.....-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 33444555566666666665555 3322 23344455555566666666666655554322222122122221111
Q ss_pred CCHHHHHHHHhcCCCCc-------HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 132 GCVDFAHQIFLQMPVRN-------LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 132 g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
....... ...+| ...+..++.-|=.+.-..+|...+..+.+. + ... -..+...|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-l--a~~-e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-L--AEH-ELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-H--HHH-HHHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-H--HHH-HHHHHHHHHHcccHHHHH
Confidence 1111110 01111 123444555555555555555554444331 0 001 112445566677777777
Q ss_pred HHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 037592 205 KHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 205 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 239 (337)
.-++.+++...-.+. ......++.+|.+.|..+.|
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777776654311111 23344555666666665533
No 196
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.73 E-value=0.0088 Score=50.15 Aligned_cols=164 Identities=18% Similarity=0.069 Sum_probs=105.1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCCCC-------cHHhHHHHHHHHHh---CCCHhHHHHHHHHHHhcCCCCCHhHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-------NLITWNSMISGFAQ---NGRGEEALRIFDDMTEGGTKPDHVSF 187 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~ 187 (337)
..+...++-.|....+++..+++++.+... ....-...+.++-+ .|+.++|++++..+......++..++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344445666789999999999999998843 22233344556666 89999999999997666677788888
Q ss_pred HHHHHHHhh---------cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH----HHHHHH---HH-h---c
Q 037592 188 IGVLSACSH---------MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE----EAETLI---EN-A---D 247 (337)
Q Consensus 188 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~---~ 247 (337)
..+...|-. ....++|+..|.+.- .+.|+...--.++..+...|... +..++- .. + +
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 877666532 123677777777654 34455433333333344444321 222222 11 1 1
Q ss_pred ---CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 248 ---CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 248 ---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
...+--.+.+++.++.-.|++++|.+.++++....|+
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 1223334567788888899999999999999988776
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.00067 Score=57.88 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=78.1
Q ss_pred CCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc-C-----ChhhHHHHHHHHHcCCChhHHHHHHHHHhh----cCccc
Q 037592 16 GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-K-----NSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFS 85 (337)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 85 (337)
+.+.+......+++.+....+++.+..++-+... | -..+.+++++.|...|..++++.+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455666667777777777777777777666522 1 233456777777788877777777776655 77778
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (337)
++.|+..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888877777777777766655555555444444444
No 198
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0048 Score=51.35 Aligned_cols=252 Identities=14% Similarity=0.030 Sum_probs=129.3
Q ss_pred HHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhh
Q 037592 29 DMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLG 102 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a 102 (337)
..+.+..++..|+..+...++ | +..-|..-+..+..-|++++|.--.++-.+ + ......-.-.++...++..+|
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344455566666666655522 2 344455556666666777777666655554 1 111222233333333333333
Q ss_pred HHHHH---------------HHHHhhC-CCCchhHHHH-HHHHHhcCCHHHHHHHHhcCCCCcHH-hHHHHH--HHHHhC
Q 037592 103 KEVHC---------------QYIRRSG-CKDVIIESAL-VDLYAKCGCVDFAHQIFLQMPVRNLI-TWNSMI--SGFAQN 162 (337)
Q Consensus 103 ~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~ 162 (337)
.+.++ ....... +|....+..+ ..++.-.|++++|.+.--...+.|.. .+...+ .++.-.
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 33222 1111111 1222222222 24556677777777765555533322 222222 334456
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHhHHHH-------------HHHHHhhcCchhhHHHHHHHHHHhc--CCCCCHHHHHHHH
Q 037592 163 GRGEEALRIFDDMTEGGTKPDHVSFIG-------------VLSACSHMGLIDRGRKHFASMTKEY--RIKPKIEHYNCMV 227 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~ 227 (337)
++.+.|...|++.+.. .|+...-.. =.+-..+.|++..|.+.|.+.+.-. ...|+...|....
T Consensus 217 ~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 217 DNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 7777888888777663 344332111 1122345677888888887776210 1223345566666
Q ss_pred HHHHhcCChHHHHHHHHHh-cCCCchhHHHHHH--HHHhcCCChhHHHHHHHHHHhcCC
Q 037592 228 DLLGRAGLLEEAETLIENA-DCRHDSSLWEVLL--GACTTFRNAHVAERVAKKIMELKP 283 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~p 283 (337)
.+..+.|+.++|+.--+.. .+. .......+. .++...+++++|.+-++++.+...
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6677778888887776653 332 222222232 446667778888888877776443
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.71 E-value=0.00072 Score=47.01 Aligned_cols=86 Identities=13% Similarity=-0.021 Sum_probs=41.5
Q ss_pred HHHHHhhchhhhhHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHHHHHHHhcCC--CCc----HHhHHHHHHHHHh
Q 037592 90 LRACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCGCVDFAHQIFLQMP--VRN----LITWNSMISGFAQ 161 (337)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~ 161 (337)
..++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..+|++.. .|+ ......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3344445555555555555555554322 2334445555555566666665555544 122 1112222334455
Q ss_pred CCCHhHHHHHHHHH
Q 037592 162 NGRGEEALRIFDDM 175 (337)
Q Consensus 162 ~~~~~~a~~~~~~m 175 (337)
.|+.++|+..+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 56666665555444
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0091 Score=46.77 Aligned_cols=226 Identities=10% Similarity=-0.038 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHH-Hhhch-hhhhHHHHH-HHHHhhCCCCchhHHHHHH
Q 037592 53 VSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRAC-AGLAA-LRLGKEVHC-QYIRRSGCKDVIIESALVD 126 (337)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~-~~~~~-~~~a~~~~~-~~~~~~~~~~~~~~~~l~~ 126 (337)
..|+.-+.++.+.+..++|..-++...+ ||.. |...-..| .+.|. +.-+.+++- ++...- |+ -++.|.+
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l--gn--pqesLdR 144 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYL--GN--PQESLDR 144 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhc--CC--cHHHHHH
Confidence 3466667777777778777776666655 2221 00000000 01111 122222222 222211 11 2455555
Q ss_pred HHHhcCCHHHHHHHHhcCCCC----------cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh
Q 037592 127 LYAKCGCVDFAHQIFLQMPVR----------NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196 (337)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 196 (337)
.+.-..-+++-+..++.-..| -....+.++..+.-.|.+.-....+.+..+...+.+......+...-.+
T Consensus 145 l~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ 224 (366)
T KOG2796|consen 145 LHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ 224 (366)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh
Confidence 555444445545444443322 2234455666666777777777788777776555566667777777777
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChh
Q 037592 197 MGLIDRGRKHFASMTKEYRIKPKIEHYN-----CMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAH 269 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 269 (337)
.|+.+.|...|+...+.. -..+..+.+ .....|.-++++..|...+.++. ...++...|.-.-+..-.|+..
T Consensus 225 ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 225 IGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred cccHHHHHHHHHHHHHHH-hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence 888888888888664332 223322222 23334555677777777777653 2223444444444444567778
Q ss_pred HHHHHHHHHHhcCCC
Q 037592 270 VAERVAKKIMELKPD 284 (337)
Q Consensus 270 ~a~~~~~~~~~~~p~ 284 (337)
.|++..+.+.+..|.
T Consensus 304 DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHhccCCc
Confidence 888888888877777
No 201
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.66 E-value=0.028 Score=47.63 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=55.3
Q ss_pred HHHhcCCC----chhHHHHHHHH--HhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 243 IENADCRH----DSSLWEVLLGA--CTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 243 ~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
.++.|+.| +...-|.+..+ +..+|++.++.-.-.-..++.|+ +.+|..++-+.....++++|..++..+
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS-~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS-PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34445554 33445666655 67899999999888888889996 999999999999999999999999874
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.0012 Score=44.47 Aligned_cols=86 Identities=13% Similarity=0.099 Sum_probs=62.5
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHh
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSG-CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (337)
..+..|...+++...-.+|+.+++.|+ .|+..+|+.++...++..--. ..-.++.-
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~-----------------------~~ie~kl~ 86 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS-----------------------EDIENKLT 86 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc-----------------------hhHHHHHH
Confidence 345556666888888888888888888 788888888887655432111 01113455
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhh
Q 037592 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSH 196 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 196 (337)
+.+.+|+.|...+++|+..+|+.++..+.+
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 677899999999999999999999987654
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.59 E-value=0.029 Score=49.67 Aligned_cols=269 Identities=15% Similarity=0.110 Sum_probs=133.9
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhc
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLA 97 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 97 (337)
.|....+.+-+..|...|.+++|..+--- --....|.-|.......=+++-|.+.|.+.+. .
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iacl--gVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRd----------------l 614 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACL--GVTDTDWRELAMEALEALDFETARKAYIRVRD----------------L 614 (1081)
T ss_pred ecccccccccchhhhhccchhhhhccccc--ceecchHHHHHHHHHhhhhhHHHHHHHHHHhc----------------c
Confidence 34444555556667777877777654211 11222344454444444445555554444322 1
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCc--HHhHHH-----HHHHHHhCCCHhHHHH
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN--LITWNS-----MISGFAQNGRGEEALR 170 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~-----l~~~~~~~~~~~~a~~ 170 (337)
.+-+...-++++.+.|-.|+... +...++-.|++.+|-++|.+--..+ ...|+- ..+-|...|..++-..
T Consensus 615 ~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKm 691 (1081)
T KOG1538|consen 615 RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKM 691 (1081)
T ss_pred HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHH
Confidence 11222333445555555555432 3344555566666666666554221 111211 2334444555444444
Q ss_pred HHHHHHh--cCCCCCHhHHHHHHHHHhhcCchhhHHHHHHH-----HHHhcCC---CCCHHHHHHHHHHHHhcCChHHHH
Q 037592 171 IFDDMTE--GGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS-----MTKEYRI---KPKIEHYNCMVDLLGRAGLLEEAE 240 (337)
Q Consensus 171 ~~~~m~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 240 (337)
+.++-.+ .+++.. .+....+...|+.++|..+.-+ ++-+-+- ..+..+...+..-+.+...+..|-
T Consensus 692 L~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 692 LIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 4332111 011100 1122333344555544433211 1111011 223345555555556667777888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch----------HHHHHHHHHHcCChhhHHHHHH
Q 037592 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS----------YVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~----------~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
++|.+++.. ..++......+++++|..+.++.-+..|+.... |...-.+|.++|+-.+|.++++
T Consensus 768 eIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 768 EIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred HHHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 888887632 335566777888888888877776665553222 3334457788888888888888
Q ss_pred HHHHhCC
Q 037592 311 LMKYSGV 317 (337)
Q Consensus 311 ~m~~~~~ 317 (337)
++-...+
T Consensus 842 QLtnnav 848 (1081)
T KOG1538|consen 842 QLTNNAV 848 (1081)
T ss_pred Hhhhhhh
Confidence 8755443
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.58 E-value=0.0021 Score=51.61 Aligned_cols=84 Identities=11% Similarity=-0.060 Sum_probs=37.9
Q ss_pred HhcCChHHHHHHHHHh-cCCCch----hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc---cchHHHHHHHHHHcCCh
Q 037592 231 GRAGLLEEAETLIENA-DCRHDS----SLWEVLLGACTTFRNAHVAERVAKKIMELKPDC---HLSYVLLDNVYRAVGRW 302 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 302 (337)
.+.|++++|...|+.+ ...|+. ..+..+..+|...|++++|...|+.+.+..|++ +.++..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555555442 122221 233334444555555555555555555444442 22333334444455555
Q ss_pred hhHHHHHHHHHH
Q 037592 303 NDAFKIRTLMKY 314 (337)
Q Consensus 303 ~~A~~~~~~m~~ 314 (337)
++|..+|+++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.58 E-value=0.0012 Score=50.12 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=70.8
Q ss_pred HHHhcC--CCCcHHhHHHHHHHHHh-----CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc--------------
Q 037592 139 QIFLQM--PVRNLITWNSMISGFAQ-----NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM-------------- 197 (337)
Q Consensus 139 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------------- 197 (337)
..|++. ...+..+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 35567777777777764 466777777888888888888888999888877542
Q ss_pred --CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 198 --GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 198 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
.+-+-|+++++.| +.+|+-||..++..+++.+.+.+.
T Consensus 115 yp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2346688888888 777888888888888888876654
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.01 Score=46.54 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=118.8
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
.+..+......+..++.|++=.. ...++++..+...|.+.-....+.+.++. .-+.++.....|+..-.+.|
T Consensus 155 ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 155 ILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcc
Confidence 34444444455777777776432 34566777777888888889999998654 44667888889999999999
Q ss_pred ChHHHHHHHHHh---cCCCchhHHHHHH-----HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHH
Q 037592 235 LLEEAETLIENA---DCRHDSSLWEVLL-----GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 235 ~~~~A~~~~~~~---~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 306 (337)
+.+.|...|+.. ..+.+..+.+.++ ..|.-.+++..|...+.++...+|.++..-+.-.-+..-.|+..+|+
T Consensus 227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 999999999843 1223333344333 34677888999999999999999998888887777777789999999
Q ss_pred HHHHHHHHhCCccCCCC
Q 037592 307 KIRTLMKYSGVKKMPGK 323 (337)
Q Consensus 307 ~~~~~m~~~~~~~~~~~ 323 (337)
+.++.|.+.-..|....
T Consensus 307 K~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 307 KQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHhccCCccchhh
Confidence 99999998766654443
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.54 E-value=0.00044 Score=50.52 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH-----HhCCccCCC
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK-----YSGVKKMPG 322 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 322 (337)
....++..+...|+++.|..+++.+...+|-+...|..++.+|...|+..+|.++|+++. +.|+.|.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 355566778899999999999999999999999999999999999999999999998875 357777554
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.059 Score=48.29 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=34.4
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
.+.+....-.+.+++.+.|..++|.+.+-+...|.. .+..|...++|.+|.++-++
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 334566667777788888888888777766665532 22344555556555555443
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.53 E-value=0.00057 Score=57.90 Aligned_cols=99 Identities=8% Similarity=-0.041 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCchh----HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHH
Q 037592 218 PKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHDSS----LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292 (337)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 292 (337)
.+...++.+..+|...|++++|+..|++ +...|+.. +|..+..+|...|+.++|+..++++++..+. .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 3577888899999999999999999987 56667643 4888888899999999999999999886322 23221
Q ss_pred HH--HHHHcCChhhHHHHHHHHHHhCCcc
Q 037592 293 DN--VYRAVGRWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 293 ~~--~~~~~g~~~~A~~~~~~m~~~~~~~ 319 (337)
.. .+....+..+..++++...+.|...
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 11 1223334557777888888777653
No 210
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.51 E-value=8.4e-05 Score=38.72 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=30.5
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHcCChhhHHH
Q 037592 275 AKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFK 307 (337)
Q Consensus 275 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 307 (337)
|+++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.50 E-value=0.037 Score=49.07 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=57.5
Q ss_pred HHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCC
Q 037592 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 217 (337)
.++-+++...+..+...+..-+.+...+.-|-++|..|-. ...++..+...++|++|..+-+... .+.
T Consensus 736 idI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hP---e~~ 803 (1081)
T KOG1538|consen 736 IDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHP---EFK 803 (1081)
T ss_pred HHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCc---ccc
Confidence 3333344444555666666666677778888888887743 2346777888899999988877663 334
Q ss_pred CCHHHHHHHHH-------------HHHhcCChHHHHHHHHHh
Q 037592 218 PKIEHYNCMVD-------------LLGRAGLLEEAETLIENA 246 (337)
Q Consensus 218 ~~~~~~~~l~~-------------~~~~~g~~~~A~~~~~~~ 246 (337)
|++ |....+ +|.++|+-.+|.++++++
T Consensus 804 ~dV--y~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 804 DDV--YMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred ccc--cchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 542 222233 445555555555555544
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.49 E-value=0.00024 Score=39.64 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
+|..+...|...|++++|+++|+++++..|+++..+..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57778888999999999999999999999999888877654
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.47 E-value=0.00045 Score=44.22 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=11.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc
Q 037592 23 VESSLVDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A~~~~~~~ 47 (337)
+|+.+...|...|++++|++.|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
No 214
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.018 Score=46.21 Aligned_cols=110 Identities=13% Similarity=0.003 Sum_probs=78.0
Q ss_pred CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHh-cCCC-chhHHH
Q 037592 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA---GLLEEAETLIENA-DCRH-DSSLWE 256 (337)
Q Consensus 182 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~~-~~~~~~ 256 (337)
-|...|..|...|...|+.+.|..-|....+-. ++++..+..+..++... ....++.++|++. ...| ++.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 367788888889999999999999998886544 44555666666655543 2466788888874 4444 444555
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 257 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
.|...+...|++.+|...|+.|.+..|.+ ..+..+++
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~-~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD-DPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC-CchHHHHH
Confidence 55577889999999999999999876663 44555444
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.43 E-value=0.00032 Score=44.96 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHh----cCCC---ccchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIME----LKPD---CHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
+++.+...|...|++++|+..|+++++ ..++ ...++..++.++...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555666666666666665554 1111 13355566666666666666666666544
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.096 Score=47.31 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=88.7
Q ss_pred CCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHH
Q 037592 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258 (337)
Q Consensus 179 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 258 (337)
|..-...+.+--+.-+...|+..+|.++-.+. + -||...|.-=+.+++..+++++-+++-+.... +.-|.-+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F-k----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF-K----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhc-C----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhH
Confidence 33344455566666777889999998887666 2 58888888888999999999998888776642 4557888
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 259 LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 259 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
+.+|.+.|+.++|.+++-+... +...+.+|.+.|++.+|.++--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999988765422 22577899999999998876443
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.39 E-value=0.0046 Score=43.46 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=55.9
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHh---------------cCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTE---------------GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---------------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
..++.+++.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34556666666666666666666654422 123467777777777777778888888888877777
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 037592 214 YRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~ 231 (337)
++++.+..+|..|++-..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 777777777777776443
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.35 E-value=0.0045 Score=45.16 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHH
Q 037592 123 ALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDM 175 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 175 (337)
.++..+...|++++|..+.+++. +-+...|..+|.+|...|+..+|.+.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444445555555555555444 223445555555555555555555555544
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.12 Score=46.81 Aligned_cols=293 Identities=15% Similarity=0.094 Sum_probs=168.6
Q ss_pred HHHhcCCCCchHhHHHH-----HHHHHhcCChHHHHHHHHHcccCC---hhhHHHHHHHHHcCCC--hhHHHHHH-HHHh
Q 037592 11 KVITLGLCGNVVVESSL-----VDMYGKCGLVDESHRVFDKMLKKN---SVSSSALLQGYCQTGD--FESVIRIF-REME 79 (337)
Q Consensus 11 ~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~A~~~~-~~~~ 79 (337)
.+.+.|++.+..-|..| ++-+...+.+..|+++-..+..|- ...|.....-+++..+ -+++++-. +++.
T Consensus 422 r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 422 RDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred cccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 34566777777666544 566777899999999988885553 3455555666665532 22333333 3333
Q ss_pred h--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC----CCchhHHHHHHHHHhcCCHHHHHHHHhcCCC-------
Q 037592 80 E--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC----KDVIIESALVDLYAKCGCVDFAHQIFLQMPV------- 146 (337)
Q Consensus 80 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 146 (337)
. .+...|..+.+.....|+.+.|..+++.=...+.. .+..-+..-+.-....|+.+-...++-.+..
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 3 44567888888888888888888776432211110 0112223334445556666655555544431
Q ss_pred -------C-cHHhHHHHHH--------HHHhCCCHhHHHHHHH--HHH----hcCCCCCHhHHHHHHHHHhhcCc-----
Q 037592 147 -------R-NLITWNSMIS--------GFAQNGRGEEALRIFD--DMT----EGGTKPDHVSFIGVLSACSHMGL----- 199 (337)
Q Consensus 147 -------~-~~~~~~~l~~--------~~~~~~~~~~a~~~~~--~m~----~~~~~p~~~~~~~l~~~~~~~~~----- 199 (337)
| ....|.-++. .+...++..++..-|. ... ..|..|+. ......+.+...
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHH
Confidence 1 1112222221 1111222222222111 100 01222332 223344443332
Q ss_pred -----hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHH
Q 037592 200 -----IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274 (337)
Q Consensus 200 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 274 (337)
..+-+++.+.+..+.+......+.+--+.-+...|+..+|.++-.+..+ ||-..|-.-+.+++..+++++.+++
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-pdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-PDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-cchhhHHHHHHHHHhhhhHHHHHHH
Confidence 1122333344434445444455566667778889999999999999875 4777788888999999999988877
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 275 AKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 275 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
.+..+. |..|.-.+.+|.+.|+.++|.+++-+.
T Consensus 738 Akskks-----PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 738 AKSKKS-----PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HhccCC-----CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 654332 678999999999999999999998654
No 220
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.12 Score=46.55 Aligned_cols=127 Identities=11% Similarity=0.027 Sum_probs=63.6
Q ss_pred hHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHH----------HHHHHhhchhhhhHHH
Q 037592 37 VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIV----------LRACAGLAALRLGKEV 105 (337)
Q Consensus 37 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l----------~~~~~~~~~~~~a~~~ 105 (337)
+++|.+..++ .|.+..|..+.......-.++-|...|-+... +.......| ...-.--|.+++|+++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 3444444433 34455666666655555555555555554433 222111111 1111223566667666
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC-----cHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-----NLITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
|-.+-++. .-+..+.+.|+|-.+.++++.-... -..+|+.+...+.....|++|.++|..
T Consensus 757 yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 757 YLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65544332 2455666777777777776654311 123556666655555556555555543
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0075 Score=50.21 Aligned_cols=96 Identities=10% Similarity=0.010 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
..++..+..+|.+.+++.+|++.-++. . .++|+...-.=..++...|+++.|+..|++++++.|+|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 346778888999999999999988863 3 34567777777789999999999999999999999999888888877776
Q ss_pred HcCChhhH-HHHHHHHHHh
Q 037592 298 AVGRWNDA-FKIRTLMKYS 315 (337)
Q Consensus 298 ~~g~~~~A-~~~~~~m~~~ 315 (337)
+.....+. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 66655554 6788888754
No 222
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.24 E-value=0.056 Score=44.58 Aligned_cols=214 Identities=16% Similarity=0.093 Sum_probs=116.2
Q ss_pred HhcCChHHHHHHHHHcccC------ChhhHHHHHHHHHcCCChhHHHHHHHHHhh-----cC----cccHHHHHHHHHhh
Q 037592 32 GKCGLVDESHRVFDKMLKK------NSVSSSALLQGYCQTGDFESVIRIFREMEE-----ID----LFSFGIVLRACAGL 96 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~ 96 (337)
...++.++|+..+.+...+ ...++..+..+.+++|++++++..--.-.. .| ..+|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777666665333 123455666677777777766554322221 11 23455566666666
Q ss_pred chhhhhHHHHHHHHHhh-CCC---CchhHHHHHHHHHhcCCHHHHHHHHhcCC-------CC--cHHhHHHHHHHHHhCC
Q 037592 97 AALRLGKEVHCQYIRRS-GCK---DVIIESALVDLYAKCGCVDFAHQIFLQMP-------VR--NLITWNSMISGFAQNG 163 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~ 163 (337)
-++.+++.+-+.-.... ..| .-...-++..++.-.+.++++++.|+... .| ....+-.|.+.|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 66666666655444321 111 12333445666666677777777776654 11 2346777777777777
Q ss_pred CHhHHHHHHHHHHhc----CCCCCHhHHH-----HHHHHHhhcCchhhHHHHHHHHHHhc---CCCC-CHHHHHHHHHHH
Q 037592 164 RGEEALRIFDDMTEG----GTKPDHVSFI-----GVLSACSHMGLIDRGRKHFASMTKEY---RIKP-KIEHYNCMVDLL 230 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~----~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~ 230 (337)
++++|.-+..+..+. ++..-..-|. .+.-++...|.+..|.+.-++..+-. |-.+ .......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 887777666554332 2221111222 23345556677666666666553321 2111 133345566777
Q ss_pred HhcCChHHHHHHHHH
Q 037592 231 GRAGLLEEAETLIEN 245 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~ 245 (337)
...|+.+.|..-|+.
T Consensus 257 R~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcccHhHHHHHHHH
Confidence 777777777766664
No 223
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.24 E-value=0.0055 Score=46.68 Aligned_cols=104 Identities=15% Similarity=0.102 Sum_probs=74.5
Q ss_pred cCcccHHHHHHHHHh-----hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHH
Q 037592 81 IDLFSFGIVLRACAG-----LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155 (337)
Q Consensus 81 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 155 (337)
.|-.+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++++=+ |.+- | ...+.++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-----------p-~n~fQ~~ 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-----------P-RNFFQAE 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-----------c-ccHHHHH
Confidence 455566666666643 47778888888899999999999999999887654 3332 1 1111111
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
-. .--.+-+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 112 F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 1234567889999999999999999999999999977664
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.23 E-value=0.0024 Score=40.17 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=37.6
Q ss_pred HHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc
Q 037592 228 DLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 287 (337)
..|.+.+++++|.++++.+ ...| ++..|.....++.+.|++++|...++++.+..|+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4566667777777777653 2323 3444555556677777777777777777777776543
No 225
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.22 E-value=0.012 Score=48.21 Aligned_cols=219 Identities=12% Similarity=0.004 Sum_probs=101.0
Q ss_pred HHcCCChhHHHHHHHHHhh------cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhh--CCCC---chhHHHHHHHHHh
Q 037592 62 YCQTGDFESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS--GCKD---VIIESALVDLYAK 130 (337)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~ 130 (337)
+..+.+.++|+..+.+... -...++..+..+.+..|.++++...----+..- ...+ ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777776655 112345556666666666665554321111110 0011 2233334444444
Q ss_pred cCCHHHHHHHHhcCC-CC-------cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-----CCHhHHHHHHHHHhhc
Q 037592 131 CGCVDFAHQIFLQMP-VR-------NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-----PDHVSFIGVLSACSHM 197 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~-~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~l~~~~~~~ 197 (337)
.-++.+++.+-..-. -| ......++..++...+.++++++.|+...+.-.. .....+..+-..|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 444444444332221 01 1122333455555666666666666665442111 1223455555556666
Q ss_pred CchhhHHHHHHHHH---HhcCCCCCHHHH-----HHHHHHHHhcCChHHHHHHHHH-------hcCCCc-hhHHHHHHHH
Q 037592 198 GLIDRGRKHFASMT---KEYRIKPKIEHY-----NCMVDLLGRAGLLEEAETLIEN-------ADCRHD-SSLWEVLLGA 261 (337)
Q Consensus 198 ~~~~~a~~~~~~~~---~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~-~~~~~~l~~~ 261 (337)
.++++|.-+...+. ...++..-..-| ..|.-++...|++-.|.+.-++ +|.++. ......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 66666665554432 222222111122 2233344555665555555443 232221 1223334455
Q ss_pred HhcCCChhHHHHHHHHHHh
Q 037592 262 CTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~ 280 (337)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 6666666666666655544
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.19 E-value=0.12 Score=44.12 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=48.9
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCC---hhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN---SVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
+-|+.+|-.|+..|...|.+++..++++++..|- ..+|..-+++-....++..+..+|.+...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 6688899999999999999999999999997763 44566666666666666666666666543
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.058 Score=41.96 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 55 SSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
|.-...+|-...++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4444445555555555555555444
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0061 Score=50.73 Aligned_cols=133 Identities=13% Similarity=0.027 Sum_probs=70.3
Q ss_pred HHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH
Q 037592 59 LQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF 136 (337)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 136 (337)
...|.+.|++..|..-|+++.. ..... -+.++..... ..-..++..|..+|.+.+++..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~-----------~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRS-----------FDEEEQKKAE--------ALKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhcccc-----------CCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhHHH
Confidence 4467788888888888888665 11100 0001111000 0123345556666667777776
Q ss_pred HHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHh-hcCc-hhhHHHHHHHHH
Q 037592 137 AHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS-HMGL-IDRGRKHFASMT 211 (337)
Q Consensus 137 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~-~~~a~~~~~~~~ 211 (337)
|+...++.. ++|+-...--..+|...|+++.|+..|+++++ +.|+......=+..|. +... .+...++|..|.
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666665554 34555555556666677777777777777766 4454444433332332 2222 233355666665
Q ss_pred H
Q 037592 212 K 212 (337)
Q Consensus 212 ~ 212 (337)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 4
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.05 E-value=0.0082 Score=51.14 Aligned_cols=61 Identities=10% Similarity=0.020 Sum_probs=51.4
Q ss_pred CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI----EHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567888888999999999999999998743 5663 35889999999999999999999874
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.03 E-value=0.11 Score=40.92 Aligned_cols=171 Identities=16% Similarity=0.111 Sum_probs=92.7
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--C----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc-
Q 037592 125 VDLYAKCGCVDFAHQIFLQMPV--R----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM- 197 (337)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~- 197 (337)
+..-.+.|++++|.+.|+.+.. | ...+.-.++.++.+.+++++|+..+++....-+.-....|...|.+++.-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 3344566777777777777662 1 23345555666677777777777777766542222222333333333311
Q ss_pred ------Cc---hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhH-HH-HHHHHHhcCC
Q 037592 198 ------GL---IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL-WE-VLLGACTTFR 266 (337)
Q Consensus 198 ------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~l~~~~~~~g 266 (337)
.+ ...|..-|+.++.+. ||. .=...|...+..+. |... ++ .+..-|.+.|
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRG 181 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 11 122333333333321 221 11111111111111 1111 12 2335688999
Q ss_pred ChhHHHHHHHHHHhcCCCcc---chHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 267 NAHVAERVAKKIMELKPDCH---LSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 267 ~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
.+..|..-++++++.-|+.+ ..+..+..+|...|-.++|...-.-+..
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99999999999998766644 4566778899999999998887654443
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=97.03 E-value=0.013 Score=42.81 Aligned_cols=83 Identities=7% Similarity=-0.138 Sum_probs=40.5
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALR 170 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (337)
...|++++|..+|+-+...++ -+..-+..|..++-..+++++|+..|.... ..|+..+.....+|...|+.++|..
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 344555555555544444433 334444445555555555555555554322 2333444445555555555555555
Q ss_pred HHHHHHh
Q 037592 171 IFDDMTE 177 (337)
Q Consensus 171 ~~~~m~~ 177 (337)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555544
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.02 E-value=0.042 Score=39.17 Aligned_cols=62 Identities=19% Similarity=0.049 Sum_probs=36.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhcCC-C----chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc
Q 037592 226 MVDLLGRAGLLEEAETLIENADCR-H----DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 287 (337)
-.....+.|++++|.+.|+.+..+ | ....--.++.+|.+.++++.|...+++.+++.|.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344455666777777777665211 1 1223344556677777777777777777777766543
No 233
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.00 E-value=0.1 Score=39.97 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=104.0
Q ss_pred hcCCHHHHHHHHhcCC--CCc-HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHH
Q 037592 130 KCGCVDFAHQIFLQMP--VRN-LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206 (337)
Q Consensus 130 ~~g~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 206 (337)
..|-+.-|+.-|.+.. .|+ +..||.|.--+...|+++.|.+.|+...+....-+-...|.-| ++--.|++.-|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 3444555555555444 343 5678888888888999999999999888854443333333333 23345788888776
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc-
Q 037592 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC- 285 (337)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~- 285 (337)
+....+...-.|-...|.-+.. ..-++.+|..-+.+--...+..-|...|-.+.- |+. ....++++++....++
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKI-SEETLMERLKADATDNT 230 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhccchH
Confidence 6666554333333344433322 233566776655442223344445554433221 111 1123344444433232
Q ss_pred ------cchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 286 ------HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 286 ------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
..+|..|+.-+...|+.++|..+|+-....++
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 45788888889999999999998887665544
No 234
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.97 E-value=0.19 Score=42.67 Aligned_cols=259 Identities=11% Similarity=0.045 Sum_probs=128.4
Q ss_pred HHHHHhcCChHHHHHHHHHcccCC--hhhHHHHHHHHHcCCChhHHHHHHHHHhh--------cCcccHHHHHHHHHhhc
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKKN--SVSSSALLQGYCQTGDFESVIRIFREMEE--------IDLFSFGIVLRACAGLA 97 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~ 97 (337)
..+.-+.|+|+...+........+ ...+.++... +.|+++++..+++++.. .....|........+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq 82 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ 82 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 456667788888666666654432 3333333332 77888888888877766 11222222222222222
Q ss_pred hhhhhHHHHHHHHHh-------------------hCCCCchhHHHHHHHHHhcCCHHHHHHHHh--cCCCCcHHhHHHHH
Q 037592 98 ALRLGKEVHCQYIRR-------------------SGCKDVIIESALVDLYAKCGCVDFAHQIFL--QMPVRNLITWNSMI 156 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~l~ 156 (337)
.+.+..++.+-.... +..++..++..++..-. .++. .+......+|..++
T Consensus 83 ~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~a 153 (352)
T PF02259_consen 83 QLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKFA 153 (352)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHHH
Confidence 222222222211110 11233333333332110 0111 11123456788888
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCC---CHhHHHHHHHHHhhcCchhhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHh
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKP---DHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 232 (337)
..+.+.|.++-|...+.++...+..+ .......-+...-..|+..+|+..++..+.. .....+......+...+..
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE 233 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc
Confidence 89999999999999998887753222 2233344455666778889999888887652 1111111111111111100
Q ss_pred cCChHHHHHH-HHHhcCCCchhHHHHHHHHHh------cCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHc
Q 037592 233 AGLLEEAETL-IENADCRHDSSLWEVLLGACT------TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299 (337)
Q Consensus 233 ~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 299 (337)
..+..... ........-...+..+..-+. ..+..+.+...|+++.+..|.....|..++..+.+.
T Consensus 234 --~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 234 --SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred --ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 00000000 000000000112222222222 347889999999999999998888888777766543
No 235
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.94 E-value=0.07 Score=37.24 Aligned_cols=140 Identities=11% Similarity=0.107 Sum_probs=86.7
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
..-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+ |--.| ...+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI----GkiFD----------is~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI----GKIFD----------ISKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH----GGGS-----------GGG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH----hhhcC----------chhhcchHH
Confidence 34467777888887777653 24445555655444444455555555555 32233 123556666
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh-cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
....+-.++. +.......+......|+-+...++++++.. -.|+ +.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 75 Vi~C~~~~n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~-p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 75 VIECYAKRNK--LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEIN-PEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCC-HHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 6655555542 344566777888999999999999999875 3444 88899999999999999999999999999998
Q ss_pred c
Q 037592 318 K 318 (337)
Q Consensus 318 ~ 318 (337)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 6
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.92 E-value=0.2 Score=42.24 Aligned_cols=167 Identities=7% Similarity=-0.011 Sum_probs=104.3
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcC---CCCCHhHHHHHHHHHhh---cCchhhHHHHHHHHHHhcCCCCCHHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGG---TKPDHVSFIGVLSACSH---MGLIDRGRKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (337)
.+...++-+|....+++..+++++.+...- +.-....-...+-++.+ .|+.++|.+++..++.. .-.+++.++
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHH
Confidence 344456667999999999999999997641 11111122233445556 89999999999996454 456788888
Q ss_pred HHHHHHHHh---------cCChHHHHHHHHH-hcCCCchhHHHHHHHHHhcCCC----hhHHHHHHHHH---H-h---cC
Q 037592 224 NCMVDLLGR---------AGLLEEAETLIEN-ADCRHDSSLWEVLLGACTTFRN----AHVAERVAKKI---M-E---LK 282 (337)
Q Consensus 224 ~~l~~~~~~---------~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~---~-~---~~ 282 (337)
..++..|.. ....++|...|.+ ....|+..+--.++..+.-.|. ..+..++-.+. . + ..
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 888877743 2247788888886 3455554432222222222222 22233332111 1 1 12
Q ss_pred CC-ccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 283 PD-CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 283 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+. +--.+.+++++..-.|+.++|.+.+++|.....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 22 123456788999999999999999999987643
No 237
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.047 Score=42.44 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC--------CCcH-HhHHHHHHHHHhCCCHhHHHHHHHHHHhcC---CCCCHhHHH
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP--------VRNL-ITWNSMISGFAQNGRGEEALRIFDDMTEGG---TKPDHVSFI 188 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~ 188 (337)
+......+.+..++++|-..|.+-. -++. ..|-..|-.|.-..++..|...++.--+.+ -+-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3344445555555555444443332 1111 223444444445556666666665533321 112334555
Q ss_pred HHHHHHhhcCchhhHHHHH
Q 037592 189 GVLSACSHMGLIDRGRKHF 207 (337)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~ 207 (337)
.|+.+| ..|+.+++.+++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 555544 345555554443
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.89 E-value=0.18 Score=41.24 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=26.8
Q ss_pred HhcCChHHHHHHHHHccc----CChh-------hHHHHHHHHHcCC-ChhHHHHHHHHHhh
Q 037592 32 GKCGLVDESHRVFDKMLK----KNSV-------SSSALLQGYCQTG-DFESVIRIFREMEE 80 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~----~~~~-------~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 80 (337)
.+.|+++.|...+.++.. .++. .+...+......+ +++.|...+++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 467888888888877621 1111 1222223333444 77777777766543
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.88 E-value=0.087 Score=45.95 Aligned_cols=163 Identities=18% Similarity=0.159 Sum_probs=97.4
Q ss_pred HHHHcCCChhHHHHHHH--HHhh-cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH
Q 037592 60 QGYCQTGDFESVIRIFR--EMEE-IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF 136 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 136 (337)
....-.|+++++.++.+ ++.. ........++.-+.+.|..+.|+++- .|+. .-.+...+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCCHHH
Confidence 34455667777666654 2221 11333566666667777777776653 3332 23455678888988
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCC
Q 037592 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216 (337)
Q Consensus 137 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (337)
|.++.++.. +...|..|.....+.|+++-|.+.|.+... +..++-.|.-.|+.+.-.++.+....+ |
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~- 403 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G- 403 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c-
Confidence 888877666 566899999998999999999988887643 445555666778877777777666332 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCch
Q 037592 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 252 (337)
-++....++.-.|+.++..+++.+.+..|-+
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A 434 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIETGRLPEA 434 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT-HHHH
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHcCCchHH
Confidence 2444555666678888888888877654433
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.19 Score=40.46 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=95.0
Q ss_pred HHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC--c--HHhHHHHHHHHHhCCCHh
Q 037592 91 RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR--N--LITWNSMISGFAQNGRGE 166 (337)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~ 166 (337)
......+++..|...+........ .+...--.++.+|...|+.+.|..++..+... + ......-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345677888999999998888765 44566677889999999999999999988732 1 122223344455555555
Q ss_pred HHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 167 EALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
+...+-++.-. .| |...-..+...+...|+.+.|.+.+-.++++..-.-|...-..|+..+.--|..+.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 55555554443 34 55555566777888888888888777776654444555666666666665554333
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.022 Score=45.08 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=26.6
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCc---cchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDC---HLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
|..++...|+++.|...|..+.+-.|++ +.++..|+.+..+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444444555555555554444433322 23344444445555555555555554443
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.79 E-value=0.11 Score=45.94 Aligned_cols=150 Identities=15% Similarity=0.093 Sum_probs=84.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh-cCcc---------cHHHHHHHHHh----hchhhhhHHHHHHHHHhhCCCCchhHHH
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE-IDLF---------SFGIVLRACAG----LAALRLGKEVHCQYIRRSGCKDVIIESA 123 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~-~~~~---------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 123 (337)
++....=.|+-+.+++.+.+..+ .+.. .|+..+..++. ..+.+.+.+++..+.+.- |+...|..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 44444556777777777777665 2221 23333333332 345566777777777653 45444432
Q ss_pred -HHHHHHhcCCHHHHHHHHhcCCCC-------cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH-HHH
Q 037592 124 -LVDLYAKCGCVDFAHQIFLQMPVR-------NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL-SAC 194 (337)
Q Consensus 124 -l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~ 194 (337)
-.+.+...|+.++|++.|++.... ....+.-++-.+.-..+|++|.+.|.++.+..- -+..+|.-+. .++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 345666778888888888765521 122334445556667778888888877776421 1223333332 233
Q ss_pred hhcCch-------hhHHHHHHHH
Q 037592 195 SHMGLI-------DRGRKHFASM 210 (337)
Q Consensus 195 ~~~~~~-------~~a~~~~~~~ 210 (337)
...|+. ++|..++.++
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHH
Confidence 355666 6666666665
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.03 Score=44.33 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC--CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTK--PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMV 227 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 227 (337)
.|+.-+.. .+.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.++++-.|. +..+..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35544443 3456677777777776665321 12234445666666777777777777766665443333 35556666
Q ss_pred HHHHhcCChHHHHHHHHHh
Q 037592 228 DLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~ 246 (337)
.+..+.|+.++|...|+++
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 6666666666666666654
No 244
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.75 E-value=0.27 Score=41.21 Aligned_cols=256 Identities=14% Similarity=0.072 Sum_probs=167.4
Q ss_pred CCchHhHHHHHHHH--HhcCChHHHHHHHHHcccCChhh----HHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHH
Q 037592 18 CGNVVVESSLVDMY--GKCGLVDESHRVFDKMLKKNSVS----SSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGI 88 (337)
Q Consensus 18 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~ 88 (337)
..|....-.|+.+- .-.|+++.|.+-|+.|... +.+ ...|.-...+.|..+.|.++-+..-. |. ...+..
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~A 193 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARA 193 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHH
Confidence 34555455555443 3469999999999999652 222 33444445678999999999988877 44 346788
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhC-CCCch--hHHHHHHHHHh---cCCHHHHHHHHhcCC--CCcHH-hHHHHHHHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSG-CKDVI--IESALVDLYAK---CGCVDFAHQIFLQMP--VRNLI-TWNSMISGF 159 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~~~~-~~~~l~~~~ 159 (337)
.+...+..|+++.|+++.+.-+...+ .++.. .-..|+.+-.. ..+...|...-.+.. .||.. .-..-..++
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAral 273 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARAL 273 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 89999999999999999987766543 22221 11222222111 123444554444433 45543 333445788
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHH
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 238 (337)
.+.|+..++-.+++.+.+....|+.. .+..+.+.|+ .+..-+++..+-...+|| ......+..+-...|++..
T Consensus 274 f~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ 347 (531)
T COG3898 274 FRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA 347 (531)
T ss_pred HhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHH
Confidence 99999999999999999975555432 2233455564 334344444222244555 4556667788888999998
Q ss_pred HHHHHHHh-cCCCchhHHHHHHHH-HhcCCChhHHHHHHHHHHh
Q 037592 239 AETLIENA-DCRHDSSLWEVLLGA-CTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 239 A~~~~~~~-~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~ 280 (337)
|..--+.. ...|....|-.|... -...|+-.++..++-+...
T Consensus 348 ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 348 ARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 88777653 466777778777766 4566999999999988876
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.74 E-value=0.19 Score=39.28 Aligned_cols=218 Identities=16% Similarity=0.069 Sum_probs=121.4
Q ss_pred CCChhHHHHHHHHHhh--cC---cccHHHHHHHHHhhchhhhhHHHHHHHHHh-hCCCCchhHHHHHHHHHhcCCHHHHH
Q 037592 65 TGDFESVIRIFREMEE--ID---LFSFGIVLRACAGLAALRLGKEVHCQYIRR-SGCKDVIIESALVDLYAKCGCVDFAH 138 (337)
Q Consensus 65 ~g~~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 138 (337)
.+....+...+..... +. ...+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 3455555555555555 22 345555666666777777777776666552 22244555556666666677777777
Q ss_pred HHHhcCCC--CcH-HhHHHHHH-HHHhCCCHhHHHHHHHHHHhcCC--CCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 139 QIFLQMPV--RNL-ITWNSMIS-GFAQNGRGEEALRIFDDMTEGGT--KPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 139 ~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
..+..... ++. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 77766653 221 22222333 56677777777777777644211 01222233333334556677777777777653
Q ss_pred hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 213 EYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 213 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
. .+. ....+..+...+...++++.|...+... ...|+ ...+......+...+..+.+...+.+.....|.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2 122 3455666666666677777777776653 23333 233333333333555677777777777666665
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.57 E-value=0.019 Score=39.81 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=50.4
Q ss_pred HHHhcCChHHHHHHHHHcc---cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCc----ccHHHHHHHHHhhchh
Q 037592 30 MYGKCGLVDESHRVFDKML---KKNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDL----FSFGIVLRACAGLAAL 99 (337)
Q Consensus 30 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~----~~~~~l~~~~~~~~~~ 99 (337)
+++..|+++.|++.|.+.+ ..+...||.-..++.-+|+.++|++-+++..+ +.. .+|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4556677777777776652 23566677777777777777777777777666 111 1233344445555666
Q ss_pred hhhHHHHHHHHHhh
Q 037592 100 RLGKEVHCQYIRRS 113 (337)
Q Consensus 100 ~~a~~~~~~~~~~~ 113 (337)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666665555554
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.54 E-value=0.41 Score=42.39 Aligned_cols=161 Identities=15% Similarity=0.055 Sum_probs=108.4
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcC-CCCCH-----hHHHHHHHHHhh----cCchhhHHHHHHHHHHhcCCCCCHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDH-----VSFIGVLSACSH----MGLIDRGRKHFASMTKEYRIKPKIE 221 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (337)
...+++...-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ....+.|.+++..+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445566667899999999998876642 22111 234444433333 45678899999999654 46655
Q ss_pred HHH-HHHHHHHhcCChHHHHHHHHHhcC-CC-----chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHH-
Q 037592 222 HYN-CMVDLLGRAGLLEEAETLIENADC-RH-----DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD- 293 (337)
Q Consensus 222 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~- 293 (337)
.|. .-...+...|++++|.+.|++... +. ....+--+.-.+.-..++++|...|..+.+...-+...|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 554 335667789999999999996421 11 1222334445677889999999999999997666555555554
Q ss_pred HHHHHcCCh-------hhHHHHHHHHHHh
Q 037592 294 NVYRAVGRW-------NDAFKIRTLMKYS 315 (337)
Q Consensus 294 ~~~~~~g~~-------~~A~~~~~~m~~~ 315 (337)
.++...|+. ++|.++|.+....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 455677888 8899999887654
No 248
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.54 E-value=0.26 Score=38.44 Aligned_cols=216 Identities=17% Similarity=0.078 Sum_probs=108.9
Q ss_pred chhhhhHHHHHHHHHhhCCC-CchhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCcHHhHHHHHHHHHhCCCHhHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMP-----VRNLITWNSMISGFAQNGRGEEALR 170 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (337)
+....+...+.......... ....+......+...+.+..+...+.... ......+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444444444432211 23445555566666666666666555543 2233445555555556666666666
Q ss_pred HHHHHHhcCCCCCHhHHHHHHH-HHhhcCchhhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHh-
Q 037592 171 IFDDMTEGGTKPDHVSFIGVLS-ACSHMGLIDRGRKHFASMTKEYRI--KPKIEHYNCMVDLLGRAGLLEEAETLIENA- 246 (337)
Q Consensus 171 ~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 246 (337)
.+.........+. ........ .+...|+++.|...+..... ... ......+......+...++.+.+...+.+.
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 6666655322221 11111222 45566666666666666632 111 112333333344455566666666666653
Q ss_pred cCCCc--hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 247 DCRHD--SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 247 ~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
...++ ...+..+...+...++++.+...+.......|.....+..+...+...+..+++...+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222 344555555566666666666666666666665334444444444455556666666555544
No 249
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.49 E-value=0.058 Score=37.95 Aligned_cols=93 Identities=12% Similarity=-0.002 Sum_probs=50.0
Q ss_pred HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 037592 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263 (337)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 263 (337)
..++..++.++++.|+.+....+++..- |+..+...- .+. +-..-+..|+..+..+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHHH
Confidence 4456666666666666666666665432 333221000 000 0011124466777777777777
Q ss_pred cCCChhHHHHHHHHHHhcC--CCccchHHHHHH
Q 037592 264 TFRNAHVAERVAKKIMELK--PDCHLSYVLLDN 294 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~ 294 (337)
..|++..|.++.+...+.. |-...+|..|+.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 7777777777777776632 222456666655
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=96.39 E-value=0.14 Score=44.03 Aligned_cols=64 Identities=11% Similarity=-0.083 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
|+.....+..+..-.++++.|..+|+++..++|+...+|...+....-.|+.++|.+.+++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3444444444444555566666666666666666666666666666666666666666665443
No 251
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.83 Score=42.26 Aligned_cols=174 Identities=9% Similarity=0.042 Sum_probs=120.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcccCChhh----HHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhh
Q 037592 25 SSLVDMYGKCGLVDESHRVFDKMLKKNSVS----SSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALR 100 (337)
Q Consensus 25 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 100 (337)
..-+..+.+..-++-|+.+-+.-.. +... .....+-+.+.|++++|...|-+... ..--..++.-|.......
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi~kfLdaq~Ik 414 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPSEVIKKFLDAQRIK 414 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChHHHHHHhcCHHHHH
Confidence 4456677777778888887766422 2222 33344556788999999998887655 111234667777788888
Q ss_pred hhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH-HhHHHHHHHHHhCCCHhHHHHHHHHHHhcC
Q 037592 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL-ITWNSMISGFAQNGRGEEALRIFDDMTEGG 179 (337)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 179 (337)
.-..+++.+.+.|. .+...-..|+.+|.+.++.++-.++.+....... .-....+..+.+.+-.++|..+-.+...
T Consensus 415 nLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-- 491 (933)
T KOG2114|consen 415 NLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-- 491 (933)
T ss_pred HHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc--
Confidence 88889999999998 6777778899999999999999998887762211 1244566777777777888776655432
Q ss_pred CCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 180 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
.......++ -..+++++|.+++..+
T Consensus 492 ---he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 ---HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred ---CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 223333333 4568899999988766
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.42 Score=38.56 Aligned_cols=171 Identities=9% Similarity=0.010 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 134 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
-+...+++++...+....-..-.......|++.+|..+|+........ +......++.++...|+.+.|..++..+..+
T Consensus 119 esqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 119 ESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 344555555555442222222334455677777777777777665322 3344455667777777777777777765321
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHh--cCCCccchHH
Q 037592 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290 (337)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~ 290 (337)
. -.........-+..+.+.....+...+-.+....| |...-..+...+...|+.+.|.+.+-.+.+ ..-.+...-.
T Consensus 198 ~-~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 198 A-QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred c-hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 1 01111111223344444445444444545544444 444444555667777777777766655555 2233345566
Q ss_pred HHHHHHHHcCChhhHH
Q 037592 291 LLDNVYRAVGRWNDAF 306 (337)
Q Consensus 291 ~l~~~~~~~g~~~~A~ 306 (337)
.|+..+.-.|.-+.+.
T Consensus 277 ~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 277 TLLELFEAFGPADPLV 292 (304)
T ss_pred HHHHHHHhcCCCCHHH
Confidence 6666666666444433
No 253
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.29 E-value=0.0096 Score=30.79 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+|..+..+|...|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4666666777777777777777777777765
No 254
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.20 E-value=0.075 Score=42.32 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=74.1
Q ss_pred HHHHhcCC--CCcHHhHHHHHHHHHh-----CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC------------
Q 037592 138 HQIFLQMP--VRNLITWNSMISGFAQ-----NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG------------ 198 (337)
Q Consensus 138 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------ 198 (337)
+..|..+. ++|..+|...+..+.. .+..+=....++.|.+.|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 5677788887777754 3566777777888899999999999999888775532
Q ss_pred ----chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 199 ----LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 199 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
+-+-++++++.| +.+|+.||..+-..|+.++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccc
Confidence 234578899999 888999999999999999987764
No 255
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.15 E-value=0.74 Score=39.52 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=84.2
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC-CCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
..+|...++.-.+..-.+.|..+|-++.+.| +.++...+++++..++ .|+...|.++|+.-+..+ +.++.-.+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 3456666666666667777777777777776 4556666677766554 566777777777654432 22333334556
Q ss_pred HHHHhcCChHHHHHHHHHh----cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 228 DLLGRAGLLEEAETLIENA----DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
..+...++-+.|..+|+.. ....-...|..+|.--..-|+...+..+-+++.++.|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 6667777777777777742 11122456777777666777777777777777666665
No 256
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.14 E-value=0.016 Score=29.88 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
.|..+...+...|++++|++.++++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3455556666667777777777776666665
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.11 E-value=0.22 Score=35.58 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHh
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMPV--R----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 195 (337)
..-.....+.|++++|.+.|+.+.. | ...+...++.+|.+.+++++|...+++.++..+.-...-|...+.+++
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344555677888888888877762 1 334566677788888888888888888877543322234444444433
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.10 E-value=1.4 Score=42.53 Aligned_cols=137 Identities=14% Similarity=0.077 Sum_probs=78.7
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
++.-.+.|.+.+|+.++.--.+.-...|.+....+.....+++|.-.|+..-+ ..-.+.+|...|+|.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334444555555444322222223445555556667778888777766532 123456777788888888
Q ss_pred HHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037592 205 KHFASMTKEYRIKPKI--EHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 205 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
.+...+.. ..+. .+-..|+..+...++.-+|-++..+....|.. .+..+++...+++|.++.....
T Consensus 986 ~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 986 SLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 88776621 2222 22356777777888888888887776544332 2334555556666666655544
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.10 E-value=0.33 Score=34.99 Aligned_cols=127 Identities=12% Similarity=0.047 Sum_probs=73.4
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
...++..+...+.......+++.+...+. .+...++.++..|++.+. ......++. ..+.......+..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 34566666667777788888887776653 455667777777775532 233333331 112222334566677
Q ss_pred hcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcC-CChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACTTF-RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 232 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
+.+.++++.-++.+++...+ .+..+... ++++.|.+++.+ ++++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~~~~------Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGNFKD------AIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcCHHH------HHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 77777777777777764222 22223333 677777777664 2335567776665543
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.12 Score=42.24 Aligned_cols=160 Identities=12% Similarity=0.041 Sum_probs=111.5
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCC
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN----CMVDLLGRAGL 235 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 235 (337)
...|++.+|-..++++++. .+.|...+.-.=.+|...|+.+.-...+++++.. ..++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4568888888889998876 5557777777778889999999988888888653 245543333 33345567899
Q ss_pred hHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc----cchHHHHHHHHHHcCChhhHHHHH
Q 037592 236 LEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC----HLSYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 236 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
+++|++.-++. .+.| |.-.-.+....+.-.|+..++.++..+-...-... .--|-...-.+.+.+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998873 4443 44445566677888899999999887765522121 123445566777889999999999
Q ss_pred HHHHHhCCccCCC
Q 037592 310 TLMKYSGVKKMPG 322 (337)
Q Consensus 310 ~~m~~~~~~~~~~ 322 (337)
+.=+-.....+.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8765554554444
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.07 E-value=0.27 Score=42.61 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHh-cCCCc---hhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 224 NCMVDLLGRAGLLEEAETLIENA-DCRHD---SSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
..+..+..+.|+.++|.+.|+++ +..|. ......|+.++...+.+.++..++.+.-+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555555666666666666654 22222 12344556666666666666666666543
No 262
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.05 E-value=0.91 Score=39.64 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=123.0
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLY 128 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (337)
|-...-+++..+..+-++.-+..+..+|.. .+-..|..++.+|... ..+.-..+|+++++..+ .++..-..|+..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 555667888889888888889999999988 5666788899999888 67788899999998876 5555555666666
Q ss_pred HhcCCHHHHHHHHhcCCCC------cH---HhHHHHHHHHHhCCCHhHHHHHHHHHHhc-CCCCCHhHHHHHHHHHhhcC
Q 037592 129 AKCGCVDFAHQIFLQMPVR------NL---ITWNSMISGFAQNGRGEEALRIFDDMTEG-GTKPDHVSFIGVLSACSHMG 198 (337)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~ 198 (337)
.+ ++.+++...|.++..+ +. ..|.-+... -..+.+..+.+..++.+. |..--...+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 65 8888888888877611 11 255555542 235677777777776553 44444555666667788889
Q ss_pred chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
++++|++++..+++.. ..|..+...++.-+.
T Consensus 220 N~~eai~Ilk~il~~d--~k~~~ar~~~i~~lR 250 (711)
T COG1747 220 NWTEAIRILKHILEHD--EKDVWARKEIIENLR 250 (711)
T ss_pred CHHHHHHHHHHHhhhc--chhhhHHHHHHHHHH
Confidence 9999999999886643 445555555555443
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.02 E-value=0.57 Score=37.06 Aligned_cols=68 Identities=13% Similarity=0.001 Sum_probs=34.9
Q ss_pred HHHcCCChhHHHHHHHHHhh--cCc----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHH
Q 037592 61 GYCQTGDFESVIRIFREMEE--IDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLY 128 (337)
Q Consensus 61 ~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (337)
.-.+.|++++|.+.|+.+.. |.. .+...++-++.+.++++.|....++.++..+.....-|...+.++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 34456666666666666665 211 123334445556666666666666666654443333333333333
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.02 E-value=0.93 Score=39.50 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=71.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 135 (337)
++.-.-+..+.+.-+++-.++.+ ||..+.-.++ +--......++++++++.++.|-..-. ..... ...|..-
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg--~s~~~---~~~g~~~ 247 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLG--KSQFL---QHHGHFW 247 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhc--hhhhh---hcccchh
Confidence 44444455566666666666665 4332222111 122334466777777777766531000 00000 0111111
Q ss_pred HHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 136 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
+. ...+-..+-..+-.-+..+..+.|+.++|++.+++|.+..... .......|+.++...+.+.++..++.+.
T Consensus 248 e~--~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 248 EA--WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hh--hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 10 1111111122333446666677788888888888876542221 2234556777777788888887777775
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.01 E-value=0.047 Score=43.93 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
++..++..+...|+.+.+...+++....+|-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4555666777777777777777777777777777777777777777777777777777654
No 266
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.90 E-value=0.068 Score=40.29 Aligned_cols=100 Identities=13% Similarity=0.023 Sum_probs=64.9
Q ss_pred HHHhhcCchhhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCch-hHHHHHHHHHhc
Q 037592 192 SACSHMGLIDRGRKHFASMTKEYRIKPK-----IEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHDS-SLWEVLLGACTT 264 (337)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~-~~~~~l~~~~~~ 264 (337)
+-+.+.|++++|..-|.+++... ++. ...|..-..++.+.+.++.|++--.+ +...|+- .....-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 34667899999999998887643 332 23344445567777888888776654 3444422 122222356888
Q ss_pred CCChhHHHHHHHHHHhcCCCccchHHHHH
Q 037592 265 FRNAHVAERVAKKIMELKPDCHLSYVLLD 293 (337)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 293 (337)
..+++.|+.-|+++.+.+|....+-...+
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 88899999999999998888654443333
No 267
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.83 E-value=1.3 Score=39.50 Aligned_cols=292 Identities=12% Similarity=0.086 Sum_probs=160.7
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHH-hcCChHHHHHHHHHcccC------ChhhHHHHHHHHHcCCChhHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYG-KCGLVDESHRVFDKMLKK------NSVSSSALLQGYCQTGDFESVIRIF 75 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 75 (337)
+.+.++|+..++ |++.+...|...+..+. ..|+.+...+.|+....- +...|...|.--..++++.....+|
T Consensus 96 ~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iy 174 (577)
T KOG1258|consen 96 ENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIY 174 (577)
T ss_pred HHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHH
Confidence 457788888876 56777777777776554 457777888888877332 4556777777777888888888888
Q ss_pred HHHhh-cCcccHHHHHHHHHh---h------chhhhhHHHHHHHH--------------------HhhC-----------
Q 037592 76 REMEE-IDLFSFGIVLRACAG---L------AALRLGKEVHCQYI--------------------RRSG----------- 114 (337)
Q Consensus 76 ~~~~~-~~~~~~~~l~~~~~~---~------~~~~~a~~~~~~~~--------------------~~~~----------- 114 (337)
++.++ |.. .++....-|.+ . ...+++.++-.... ..+-
T Consensus 175 eRileiP~~-~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~ 253 (577)
T KOG1258|consen 175 ERILEIPLH-QLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTI 253 (577)
T ss_pred HHHHhhhhh-HhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHH
Confidence 88876 221 11111100000 0 00111111100000 0000
Q ss_pred ----------------------------------------CCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC---cHHh
Q 037592 115 ----------------------------------------CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR---NLIT 151 (337)
Q Consensus 115 ----------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 151 (337)
+++..+|...+..-.+.|+.+.+.-+|++..-| -...
T Consensus 254 l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~ef 333 (577)
T KOG1258|consen 254 LKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEF 333 (577)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHH
Confidence 012233344444444445555555555444422 1123
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHH-HhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA-CSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDL 229 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 229 (337)
|--.+.-....|+.+-|..++....+--++ +......+-.. +-..|+++.|..+++.+..+ . |+ ...-..-+..
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINW 409 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhH
Confidence 333333334446666666666655544332 22222222222 23467999999999998554 3 54 3333344556
Q ss_pred HHhcCChHHHH---HHHHHh-cCCCchhHHHHHH-----HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 230 LGRAGLLEEAE---TLIENA-DCRHDSSLWEVLL-----GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 230 ~~~~g~~~~A~---~~~~~~-~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
..+.|+.+.+. +++... ..+-+......+. -.+.-.++.+.|..++.++.+..|++...|..++......+
T Consensus 410 e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 410 ERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 67788888887 444432 1122222222222 12556788999999999999999998888988888776665
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.73 E-value=0.094 Score=36.55 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=20.7
Q ss_pred HhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 129 AKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 129 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
...|+.+.|++.|.+.. +.....||.-.+++.-.|+.++|++-+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 33444444444444333 22334444444444444444444444444433
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.98 Score=37.25 Aligned_cols=143 Identities=12% Similarity=0.030 Sum_probs=94.8
Q ss_pred HhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHH----HHHHhhchhhh
Q 037592 32 GKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVL----RACAGLAALRL 101 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~~~~~~~ 101 (337)
-.+|++.+|-..++++.+ .|..++.-.=.+|.-.|+...-...++++.. +|...|+.+- -++...|-+++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345666666666666632 2566666666777788888888888887776 6665554432 23456788888
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC----c---HHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR----N---LITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
|++.-++.++.+. -|.-...++...+...|++.++.++..+-... + ..-|-...-.+...+.++.|+++|++
T Consensus 194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 8888888877765 55666667777778888888888887766521 1 11233334455667888888888875
Q ss_pred H
Q 037592 175 M 175 (337)
Q Consensus 175 m 175 (337)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.65 E-value=0.99 Score=36.99 Aligned_cols=18 Identities=11% Similarity=0.449 Sum_probs=14.5
Q ss_pred HcCCChhHHHHHHHHHhh
Q 037592 63 CQTGDFESVIRIFREMEE 80 (337)
Q Consensus 63 ~~~g~~~~A~~~~~~~~~ 80 (337)
.++|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 467888888888888776
No 271
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.62 E-value=0.55 Score=33.82 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=41.7
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHh
Q 037592 87 GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166 (337)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (337)
..++..+...+.......+++.+...+. .+...++.++..|++.+ ..+..+.++. ..+.......+..|.+.+-++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 3455555555566666666666666553 55566666666666543 2333333331 112222223444444444444
Q ss_pred HHHHHHHHH
Q 037592 167 EALRIFDDM 175 (337)
Q Consensus 167 ~a~~~~~~m 175 (337)
++..++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 444444443
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.33 Score=36.55 Aligned_cols=129 Identities=7% Similarity=0.016 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHH--HHHHHhhcCchhhHHHHHHHHHHhcCCCCCH----HHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG--VLSACSHMGLIDRGRKHFASMTKEYRIKPKI----EHYN 224 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 224 (337)
.|..++.... .+.. +.....+++...........+.. +...+...|++++|...++..+. .+.|. .+--
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHH
Confidence 4444554433 2333 44444555544321211122222 23455666777777777766542 12221 2223
Q ss_pred HHHHHHHhcCChHHHHHHHHHhcCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 225 CMVDLLGRAGLLEEAETLIENADCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 225 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
.|.......|.+++|+..++....+. .......-...+...|+-++|+.-|.++++..++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 34455566677777777776543211 1111112224566777777777777777665543
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.52 E-value=0.19 Score=43.84 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=80.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhh
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRL 101 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 101 (337)
...+.++..+.+.|..+.|+.+-..- ..-.....+.|+++.|.++.++. .+...|..|.......|+++-
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~--~~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKEL--DDPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCC--STHHHHHHHHHHHHHTTBHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhc--CcHHHHHHHHHHHHHcCCHHH
Confidence 34788888889999999998876332 23344456677777777666554 345577778888888888888
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
|++.|++... +..|+-.|.-.|+.++-.++.+...... -++....++.-.|+.++..+++.+
T Consensus 366 Ae~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 366 AEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG--DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8777765543 3456666777777766666655444211 133334444455677776666644
No 274
>PRK11906 transcriptional regulator; Provisional
Probab=95.52 E-value=1.5 Score=38.09 Aligned_cols=62 Identities=11% Similarity=-0.012 Sum_probs=30.1
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV-SFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
|..+...+..+....++++.|...|++... ..||.. +|....-.+.-.|+.++|.+.+++.+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444444555544555556666666665555 233322 22222223334455666666555543
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=0.2 Score=36.90 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=85.7
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHH-----HHHHhhchhhhhHHHHHHHHHhhCCCCch-hHHH-
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVL-----RACAGLAALRLGKEVHCQYIRRSGCKDVI-IESA- 123 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~- 123 (337)
+...|..-+. ..+.|..++|+.-|..+.+.+...|-.|. ....+.|+-..|...|.++-.....|-.. -...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444444444 45677788888888888875555554443 34567788888888888887664444322 1111
Q ss_pred -HHHHHHhcCCHHHHHHHHhcCCCC-c---HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC
Q 037592 124 -LVDLYAKCGCVDFAHQIFLQMPVR-N---LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183 (337)
Q Consensus 124 -l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 183 (337)
-.-.+...|.+++...-.+.+..+ + ...-.+|.-+-.+.|++.+|.+.|..+......|.
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 122456778898888888777632 2 23456677777889999999999998877544443
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.51 E-value=0.033 Score=30.87 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhh
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRS 113 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 113 (337)
+..+...+...|++++|+++++++++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3444445555555555555555555543
No 277
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.37 E-value=0.61 Score=32.76 Aligned_cols=59 Identities=7% Similarity=0.246 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
...+......|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34455556666666666666666542 344555555666677777777777777666644
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=0.8 Score=33.90 Aligned_cols=131 Identities=17% Similarity=0.150 Sum_probs=76.1
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHH-HHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV-SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE-HYNC 225 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 225 (337)
....|..-+. +.+.+..++|+.-|..+.+.|...-.. ............|+...|...|+++-... ..|-.. -...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHH
Confidence 3445554444 356678888888888887765442111 11122234557788888888888885432 222211 1111
Q ss_pred --HHHHHHhcCChHHHHHHHHHhcCCCch---hHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 226 --MVDLLGRAGLLEEAETLIENADCRHDS---SLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 226 --l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
-.-.+...|.++......+.+....++ ..-..|.-+-.+.|++..|.+.|..+..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 122455678888887777776432222 2223455556688888888888887766
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.21 E-value=0.05 Score=28.56 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
+|..|+.+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999998855
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.14 E-value=3.4 Score=40.09 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=55.9
Q ss_pred HHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchh--HHHHHHHHHhcCCChh
Q 037592 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS--LWEVLLGACTTFRNAH 269 (337)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~ 269 (337)
..+.....+++|--.|+..-+ ...-+.+|..+|+|++|+.+-.++...-+.. +-..|+.-+...+++-
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccch
Confidence 334445566666655554411 1223566777777777777777664333322 2256667788888888
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHH
Q 037592 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 270 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
+|-++..+..+ +|. ..+..|++...|++|..+.
T Consensus 1017 eAa~il~e~~s-d~~------~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 1017 EAAKILLEYLS-DPE------EAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred hHHHHHHHHhc-CHH------HHHHHHhhHhHHHHHHHHH
Confidence 88777766543 111 2233444445555555543
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.12 E-value=0.048 Score=28.65 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=11.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHH
Q 037592 55 SSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555554
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.11 E-value=0.59 Score=35.28 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH--hHHHHHHHHHhhcCchhhHHHHHHHHHHhcC--CCCCHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH--VSFIGVLSACSHMGLIDRGRKHFASMTKEYR--IKPKIEHYNCM 226 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l 226 (337)
.+..+...|++.|+.++|++.|.++.+....|.. ..+..++......+++..+...+.++..... -+++....-..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666666666666666666666665443332 2344455555666666666666655522111 11111111111
Q ss_pred H--HHHHhcCChHHHHHHHHHh
Q 037592 227 V--DLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 227 ~--~~~~~~g~~~~A~~~~~~~ 246 (337)
. -.+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1233456777777776553
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=2.5 Score=39.37 Aligned_cols=214 Identities=11% Similarity=0.020 Sum_probs=129.5
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhC
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (337)
....-+..+.+...++-|..+.+. .+..++ ..+.....+.+.+.|++++|...|-+...--.. ..+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 456677777888888888776533 232222 233444556667889999998888766522111 1245666677
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
.+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.. .. |.- ..-....+..+.+.+-.++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~-~~-g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC-DK-GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC-CC-cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 7777888888888888876 4444466888999999988877766654 22 211 11123456667777777888777
Q ss_pred HHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc-cchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC-HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
-.+.+..+.. .. -.+-..+++++|++.+..+ .|+. ..+....+..+.. ..+++-..++-+......
T Consensus 486 A~k~~~he~v--l~---ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~ 552 (933)
T KOG2114|consen 486 ATKFKKHEWV--LD---ILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE-HDPEETMKILIELITELN 552 (933)
T ss_pred HHHhccCHHH--HH---HHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcC
Confidence 7766543222 22 2345678899998887643 3331 1122222333333 456676766665554433
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.00 E-value=0.066 Score=43.84 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=65.5
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCC
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRN 267 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~ 267 (337)
.+-|.+.|.+++|+..|...+ .+.| ++.++..-..+|.+..++..|+.--+.. . .+.=...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 456778899999999998775 3345 7888888888888888888777655442 1 11122345555556667788
Q ss_pred hhHHHHHHHHHHhcCCCc
Q 037592 268 AHVAERVAKKIMELKPDC 285 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~~ 285 (337)
..+|.+-++.++++.|++
T Consensus 181 ~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhHHHHHhhCccc
Confidence 888888888888899985
No 285
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=1.4 Score=34.43 Aligned_cols=52 Identities=19% Similarity=0.068 Sum_probs=29.7
Q ss_pred CChHHHHHHHHHhc-----CCCchhHHHHHHH---HHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 234 GLLEEAETLIENAD-----CRHDSSLWEVLLG---ACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 234 g~~~~A~~~~~~~~-----~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
.++++|+..|+..+ ...+...-..++. --+..+++.+|+++|++.....-++
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45566666665531 1222222223332 2467788999999999888755444
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.91 E-value=0.049 Score=28.17 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=22.3
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHH
Q 037592 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 138 (337)
|++.++..+ .+...|+.+...|...|++++|+
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555554 56777777888888888877775
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.82 E-value=1.1 Score=32.80 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=61.5
Q ss_pred HHHHhcCChHHHHHHHHHc--ccCChhh-HHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhH
Q 037592 29 DMYGKCGLVDESHRVFDKM--LKKNSVS-SSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGK 103 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~--~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~ 103 (337)
..-.+.++.+++..+++.+ ..|.... -..-...++..|++.+|+.+|+.+.+ |....-..|+..|.....-..=.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 3445678888998888887 4554332 23334557788999999999999877 33333344444444443333334
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
.+-+++++.+..|+. ..++..+....+...|..
T Consensus 98 ~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 98 RYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 444455555433332 234455554444444433
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.81 E-value=0.057 Score=27.72 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=17.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 255 WEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 255 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
|..+...|.+.|++++|...|+++.+++|+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 444555566666666666666666665553
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.71 E-value=0.71 Score=34.84 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=9.7
Q ss_pred HhcCCHHHHHHHHhcCC
Q 037592 129 AKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 129 ~~~g~~~~A~~~~~~~~ 145 (337)
...|++..|-+.|-+..
T Consensus 124 l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 124 LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHhchHHHHHHHHHccC
Confidence 34566666666665544
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.68 E-value=0.32 Score=39.29 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMT 176 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 176 (337)
..++..+...|+++.+.+.++++. +-+...|..++.+|.+.|+...|+..|+++.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444444455555555444444 1133445555555555555555555555443
No 291
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.68 E-value=2.6 Score=36.41 Aligned_cols=251 Identities=10% Similarity=0.086 Sum_probs=133.4
Q ss_pred HHHhcCChHHHHHHHHHcccC---C------hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHH--HHhh
Q 037592 30 MYGKCGLVDESHRVFDKMLKK---N------SVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRA--CAGL 96 (337)
Q Consensus 30 ~~~~~~~~~~A~~~~~~~~~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~ 96 (337)
.+-+.+++++|.++|.++.+. + ...-+.++++|... +.+.....+....+ | ...|..+..+ +.+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 345678999999999998332 2 12235566776544 45555555555555 5 4456666554 4577
Q ss_pred chhhhhHHHHHHHHHh--hCCC------------CchhHHHHHHHHHhcCCHHHHHHHHhcCC----C----CcHHhHHH
Q 037592 97 AALRLGKEVHCQYIRR--SGCK------------DVIIESALVDLYAKCGCVDFAHQIFLQMP----V----RNLITWNS 154 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~----~~~~~~~~ 154 (337)
+++++|.+.+...... +..+ +...=+..++++...|++.+++.+++++. + =+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899998888777655 2221 12222456777888899999988888876 1 26667776
Q ss_pred HHHHHHhC--------CC-------HhHHHHHHHHHHhc------CCCCCHhHHHHHHHHHhhc--CchhhHHHHHHHHH
Q 037592 155 MISGFAQN--------GR-------GEEALRIFDDMTEG------GTKPDHVSFIGVLSACSHM--GLIDRGRKHFASMT 211 (337)
Q Consensus 155 l~~~~~~~--------~~-------~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~ 211 (337)
++-.+.++ .. ++-+.-+.++|... .+-|....+..++....-. .+..--.++++.-
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W- 251 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW- 251 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH-
Confidence 44433321 11 22222233333221 1234444444444333221 1122222333322
Q ss_pred HhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhc-------CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCC
Q 037592 212 KEYRIKPKI-EHYNCMVDLLGRAGLLEEAETLIENAD-------CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283 (337)
Q Consensus 212 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 283 (337)
+.+-+.|+- -+...|...+.+ +.+++..+-+.+. .+.-..++..++....+.++...|.+.+.-..-++|
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 222344442 222333333333 4444444433221 111234566666667777777777777777777777
Q ss_pred Cc
Q 037592 284 DC 285 (337)
Q Consensus 284 ~~ 285 (337)
+.
T Consensus 330 ~~ 331 (549)
T PF07079_consen 330 RI 331 (549)
T ss_pred cc
Confidence 74
No 292
>PRK09687 putative lyase; Provisional
Probab=94.60 E-value=2.1 Score=35.07 Aligned_cols=237 Identities=10% Similarity=-0.044 Sum_probs=135.2
Q ss_pred HHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHHhhchh----hhhHHHHHHHHHhhCCCCc
Q 037592 44 FDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGLAAL----RLGKEVHCQYIRRSGCKDV 118 (337)
Q Consensus 44 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~ 118 (337)
++.+.++|.......+.++...|.. ++...+..+.. +|...-...+.++.+.|+. +++...+..+... .++.
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 3334556776777777777766653 34444444444 6666666777777777764 3455555555332 2555
Q ss_pred hhHHHHHHHHHhcCC-----HHHHHHHHhc-CCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 037592 119 IIESALVDLYAKCGC-----VDFAHQIFLQ-MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~-----~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 192 (337)
.+....+.++...+. ...+...+.. +..++..+-...+.++.+.++ ++++..+-.+.+. ++...-...+.
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 555555555555432 1233443433 234566666667777777766 4566666666652 34444444445
Q ss_pred HHhhcC-chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHH
Q 037592 193 ACSHMG-LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 193 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 271 (337)
++.+.+ ..+.+...+..++. .++..+....+.++.+.|+.+-...+.+.+.. ++. ....+.++...|.. +|
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~-~~~--~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELKK-GTV--GDLIIEAAGELGDK-TL 253 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHcC-Cch--HHHHHHHHHhcCCH-hH
Confidence 555442 23456666666543 45667777778888888874433333444443 232 34566777777775 67
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHH
Q 037592 272 ERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
...+..+.+..|+ ...-...+.++
T Consensus 254 ~p~L~~l~~~~~d-~~v~~~a~~a~ 277 (280)
T PRK09687 254 LPVLDTLLYKFDD-NEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHhhCCC-hhHHHHHHHHH
Confidence 7888887776775 44444444443
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.21 E-value=2.3 Score=33.99 Aligned_cols=257 Identities=15% Similarity=0.171 Sum_probs=142.8
Q ss_pred cCCCCchHhHHHHHHH-HHhcCChHHHHHHHHHcccC-------ChhhHHHHHHHHHcCCChhHHHHHHHHHhh------
Q 037592 15 LGLCGNVVVESSLVDM-YGKCGLVDESHRVFDKMLKK-------NSVSSSALLQGYCQTGDFESVIRIFREMEE------ 80 (337)
Q Consensus 15 ~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 80 (337)
.+-.||+..-|..-.. -.+...+++|+.-|+...+. .-.+.-.++..+.+.|++++..+.|.++..
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3445666554433221 12445788888888887432 223445678888899999999888888875
Q ss_pred ---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhC-CCCch----hHHHHHHHHHhcCCHHHHHHHHhcCCC------
Q 037592 81 ---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVI----IESALVDLYAKCGCVDFAHQIFLQMPV------ 146 (337)
Q Consensus 81 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 146 (337)
-...+.+.++.--+...+.+...++|+.-++.-- ..+.. +-+.|...|...|.+.+..++++++..
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 2334567777766677777766666654443210 12222 224577788888888888888777651
Q ss_pred --Cc-------HHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-CCCCCHhHHHHHHHHH-----hhcCchhhHHHHHHHHH
Q 037592 147 --RN-------LITWNSMISGFAQNGRGEEALRIFDDMTEG-GTKPDHVSFIGVLSAC-----SHMGLIDRGRKHFASMT 211 (337)
Q Consensus 147 --~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~ 211 (337)
.| ...|..=|+.|....+-.+-..+|++...- .--|.+.... ++.-| .+.|++++|..-|-++-
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHH
Confidence 01 235666778888888777777788776542 1223443333 33333 34577777765444433
Q ss_pred Hhc---CCCCC--HHHHHHHHHHHHhcCC----hHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHH
Q 037592 212 KEY---RIKPK--IEHYNCMVDLLGRAGL----LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKK 277 (337)
Q Consensus 212 ~~~---~~~~~--~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 277 (337)
+.+ |.+.. ..-|..|..++.+.|- ..+|. .....|.....+.++.+|... +..+-+++++.
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~ 328 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN-DIIEFERILKS 328 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHh
Confidence 432 22111 1223444455554431 11110 012334455566666666433 44444444433
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.13 E-value=0.15 Score=26.15 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666777777776666665
No 295
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.82 E-value=5.6 Score=36.96 Aligned_cols=117 Identities=10% Similarity=0.005 Sum_probs=67.9
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhc-CCCchhHHHHHHHHHhcCCChhHHHH
Q 037592 197 MGLIDRGRKHFASMTKEYRIKPKI--EHYNCMVDLLGRAGLLEEAETLIENAD-CRHDSSLWEVLLGACTTFRNAHVAER 273 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 273 (337)
..+.+.|...+.......++.+.. .++..+.......+..++|...++... ...+......-+......++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 345577888887764443333332 223334333333333566777776542 22233444444545557778887777
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 274 VAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 274 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
.+..+............=++.++...|+.++|..+|++..
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777655333334556666777777888888888887763
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.48 E-value=0.22 Score=25.38 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
..+..++.++...|++++|++.|++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999988754
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=4.8 Score=36.21 Aligned_cols=123 Identities=20% Similarity=0.126 Sum_probs=59.1
Q ss_pred hcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHH
Q 037592 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209 (337)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (337)
-.|+++.|..++-.+.+ ...+.++..+.+.|-.++|+++- ..|+. -| ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHh
Confidence 34555555555444442 22233444444555555554431 22221 11 122355666666665544
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
. .+..-|..|..+....|++..|.+.|.+.. -|..|+-.+...|+-+....+-....+
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 3 234456666666666666666666666532 133444444445554444444444443
No 298
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.66 Score=36.25 Aligned_cols=78 Identities=9% Similarity=0.070 Sum_probs=37.4
Q ss_pred ChHHHHHHHHH-hcCCCchhH-HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 235 LLEEAETLIEN-ADCRHDSSL-WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 235 ~~~~A~~~~~~-~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
+++.|...|.+ +.+.|++.+ |..=+.++.+..+++.+..--++++++.|+.......+.........+++|+..+.+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34444443332 334444422 2333344444555555555555555555555555555555555555555555555444
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.81 E-value=0.56 Score=33.71 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=58.1
Q ss_pred HHHHHHHHH---HhcCChHHHHHHHHHhc-CCCchhHHHHHH-HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 222 HYNCMVDLL---GRAGLLEEAETLIENAD-CRHDSSLWEVLL-GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 222 ~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
+.+.|++.. ...++.+++..+++.+. .+|+......+- ..+...|++++|.+++++..+-.|..+..-..+..++
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 444444433 34788999999998874 455544333332 3377889999999999999887777554444555555
Q ss_pred HHcCChhhHHHHHHHHHHhCCc
Q 037592 297 RAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
.-.|+.+- ...-+++.+.|-.
T Consensus 89 ~al~Dp~W-r~~A~~~le~~~~ 109 (153)
T TIGR02561 89 NAKGDAEW-HVHADEVLARDAD 109 (153)
T ss_pred HhcCChHH-HHHHHHHHHhCCC
Confidence 55555332 2223344444443
No 300
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.65 E-value=6.7 Score=34.48 Aligned_cols=238 Identities=13% Similarity=0.154 Sum_probs=128.5
Q ss_pred HHHHHHHHHcccC--ChhhHHHHHHHHHcCC------ChhHHHHHHHHHhh------cCcccHHHHHHHHHhhchhhhhH
Q 037592 38 DESHRVFDKMLKK--NSVSSSALLQGYCQTG------DFESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGK 103 (337)
Q Consensus 38 ~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~ 103 (337)
+....+|+....+ +..-|+..|..|...- .......+++...+ -....|..+...+...+.. .
T Consensus 299 s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~---r 375 (568)
T KOG2396|consen 299 SRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEA---R 375 (568)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchH---h
Confidence 3344777776443 4445666665554322 33444445555444 2223455555555444433 3
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcC-CHHH-HHHHHhcCC----CCcHHhHHHHH-HHHHhCCCHhHHHHHHHHHH
Q 037592 104 EVHCQYIRRSGCKDVIIESALVDLYAKCG-CVDF-AHQIFLQMP----VRNLITWNSMI-SGFAQNGRGEEALRIFDDMT 176 (337)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~-A~~~~~~~~----~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~m~ 176 (337)
..-..+...++..+...|..-+....+.. +++- -...|.... .+-...|++.. ..+......+..+..+..+
T Consensus 376 ~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~- 454 (568)
T KOG2396|consen 376 EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV- 454 (568)
T ss_pred HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh-
Confidence 33333344445566666655555544332 2211 111122222 23334454444 1111111122222222222
Q ss_pred hcCCCCCHhHH-HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHhc--CCC
Q 037592 177 EGGTKPDHVSF-IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG---RAGLLEEAETLIENAD--CRH 250 (337)
Q Consensus 177 ~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~--~~~ 250 (337)
..|+..|+ +.++..+-+.|-..+|...+..+... -+|+...|..+++.-. .+| +..++.+|+.+- .-.
T Consensus 455 ---~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~ 528 (568)
T KOG2396|consen 455 ---IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGA 528 (568)
T ss_pred ---cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCC
Confidence 45566655 34567777888889999999988543 3567778888876433 233 777888887641 125
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHh-cCCCc
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDC 285 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~ 285 (337)
|+..|--.+.--..+|..+.+-.++.++.+ ++|..
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 677788888777899999998888877766 66663
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.65 E-value=0.28 Score=26.36 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=6.3
Q ss_pred HHHhcCCChhHHHHHHHH
Q 037592 260 GACTTFRNAHVAERVAKK 277 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~ 277 (337)
..|...|++++|..++++
T Consensus 10 ~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 10 NAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHCT-HHHHHHHHHH
T ss_pred HHHHhhhhcchhhHHHHH
Confidence 333333333333333333
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.63 E-value=0.43 Score=36.18 Aligned_cols=87 Identities=11% Similarity=-0.015 Sum_probs=57.6
Q ss_pred HHHhhchhhhhHHHHHHHHHhhCCCC----chhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHH---hHHHHHHHHHhCCC
Q 037592 92 ACAGLAALRLGKEVHCQYIRRSGCKD----VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI---TWNSMISGFAQNGR 164 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 164 (337)
-+.+.|++++|..-|..++...+... ...|..-..++.+.+.++.|+.-..+....++. +..--..+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 35567777777777777777654322 344555566777888888888777766644332 22233456777788
Q ss_pred HhHHHHHHHHHHhc
Q 037592 165 GEEALRIFDDMTEG 178 (337)
Q Consensus 165 ~~~a~~~~~~m~~~ 178 (337)
+++|+.=|.++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888774
No 303
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.58 E-value=1.2 Score=29.31 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=43.2
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
+.-++.+-++.+......|+.....+.+.+|.+.+++..|.++++.+..+.| .+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 3445666666777777788888888888888888888888888887733332 2444565554
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.58 E-value=3.1 Score=30.52 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=24.6
Q ss_pred HhcCCHHHHHHHHhcCC--CCcHH-hHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 129 AKCGCVDFAHQIFLQMP--VRNLI-TWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 129 ~~~g~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
.+.++.+++..++..+. .|... .-..-...+...|+|.+|+.+|+++..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34455666666655554 33222 111222334566666666666666544
No 305
>PRK09687 putative lyase; Provisional
Probab=92.56 E-value=5.1 Score=32.89 Aligned_cols=235 Identities=11% Similarity=-0.028 Sum_probs=146.2
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCCh----hHHHHHHHHHh-h-cCcccHHHHHH
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF----ESVIRIFREME-E-IDLFSFGIVLR 91 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~-~-~~~~~~~~l~~ 91 (337)
.+|..+....+..+...|..+....+..-+..+|...-...+.++...|+. .++...+..+. + ++.......+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~ 113 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAIN 113 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 456666677777777777644444444433566777777778888888864 46888888773 3 77666667777
Q ss_pred HHHhhchhhh--hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCC-CHhHH
Q 037592 92 ACAGLAALRL--GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG-RGEEA 168 (337)
Q Consensus 92 ~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a 168 (337)
++...+.... -......+...-..++..+-...+.++.+.|+-+....+..-+..+|...-...+.++...+ +...+
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~ 193 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDI 193 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 7666543211 11222223222223566777778888888887544444444444667766666666666653 24567
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D 247 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 247 (337)
...+..+.. .++...-...+.++.+.|+. .|...+-..++. ++ .....+.++...|.. +|...+.++ .
T Consensus 194 ~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 194 REAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 777777764 45666677777888888874 566555555443 22 344677888888885 677777765 3
Q ss_pred CCCchhHHHHHHHHHh
Q 037592 248 CRHDSSLWEVLLGACT 263 (337)
Q Consensus 248 ~~~~~~~~~~l~~~~~ 263 (337)
..||...-...+.++.
T Consensus 263 ~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 263 KFDDNEIITKAIDKLK 278 (280)
T ss_pred hCCChhHHHHHHHHHh
Confidence 4667766555555543
No 306
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.51 E-value=3 Score=34.50 Aligned_cols=46 Identities=9% Similarity=0.198 Sum_probs=27.0
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHh--cC----ChHHHHHHHHHc
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGK--CG----LVDESHRVFDKM 47 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~ 47 (337)
+++...+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~m 129 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEM 129 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 34566777777777777776665543333322 22 234566677776
No 307
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.36 E-value=3.1 Score=30.03 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=42.3
Q ss_pred HHhcCChHHHHHHHHHc--ccCC-hhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHH
Q 037592 31 YGKCGLVDESHRVFDKM--LKKN-SVSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACA 94 (337)
Q Consensus 31 ~~~~~~~~~A~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~ 94 (337)
-...++++++..+++.+ ..|+ ...-..-...++..|++.+|+++|+...+ .....|..-+.++|
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34578899999998887 4553 22223334557788999999999999887 33334554444443
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.30 E-value=2.7 Score=37.65 Aligned_cols=133 Identities=12% Similarity=0.092 Sum_probs=82.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhh
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRL 101 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 101 (337)
...+.+++.+.+.|-.++|+++- .+|+ . -.....+.|+++.|.++..+. .+..-|..|.++....+++..
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---~D~d--~---rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~l 684 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---TDPD--Q---RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPL 684 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---CChh--h---hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchh
Confidence 35677778888888888887653 2221 1 123345668888887776654 455668888888888888888
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 175 (337)
|.+.+.+.... ..|+-.+...|+-+....+-..... ....|....+|...|+++++.+++..-
T Consensus 685 A~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~--~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 685 ASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKK--QGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHh--hcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 88887666543 3456666666666544433333321 111122234566678888888877543
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.15 E-value=0.24 Score=24.95 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=10.3
Q ss_pred HHHHHHHcCChhhHHHHHHHHHH
Q 037592 292 LDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 292 l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
++.++.+.|++++|.+.|+++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.02 E-value=0.084 Score=38.25 Aligned_cols=129 Identities=10% Similarity=0.048 Sum_probs=77.5
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhH
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 167 (337)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35566667778888888888888777666788888899999988887888887774332 333445666667777777
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 168 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
|.-++.++....- .+..+...++++.|.++... .+++..|..++..+...+.
T Consensus 89 a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 7776665433211 01112344555555532221 2345566666666555443
No 311
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.81 E-value=2 Score=28.65 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
+..+-+..+....+.|+.....+.+.+|.+.+++..|.++++.+..+.|.. ...|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHH
Confidence 455556666666777888888888888888888888888888874443322 22565554
No 312
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.79 E-value=4.2 Score=30.24 Aligned_cols=135 Identities=8% Similarity=0.071 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHh
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA--GLLEEAETLIENA 246 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 246 (337)
.++++.+.+.+++|+...+..++..+.+.|++..-.+++. . ++-+|.......+-.+... .-..-|.+++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~-~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----Y-HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----h-cccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 3455666677788888888888888888887655444433 2 3344433333332222211 1144555666666
Q ss_pred cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 247 DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+.. +..++..+...|++-+|.++.+.....+.- .-..++++-.+.++...-..+++-..+++
T Consensus 89 ~~~-----~~~iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 89 GTA-----YEEIIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hhh-----HHHHHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 532 455667778888888888887765332211 12345666666666666566665555544
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.74 E-value=0.23 Score=35.89 Aligned_cols=117 Identities=13% Similarity=0.102 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcC
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEID 82 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 82 (337)
+....+++.+...+...+....+.++..|++.++.+...++++.. +......++..|.+.|.+++|.-++.++...+
T Consensus 24 ~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~ 100 (143)
T PF00637_consen 24 EELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCEKHGLYEEAVYLYSKLGNHD 100 (143)
T ss_dssp GGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHT
T ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHHhcchHHHHHHHHHHcccHH
Confidence 344556677776654556777788888888887777777777632 22333456666666666666666666554311
Q ss_pred cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 037592 83 LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133 (337)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (337)
. .+..+...++++.|.++..+ .++..+|..++..+...+.
T Consensus 101 ~-----al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 101 E-----ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp T-----CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred H-----HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 1 11112334455555533211 2567788888887776654
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.56 E-value=0.42 Score=25.63 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=15.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 54 SSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45666666666666666666666554
No 315
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.55 E-value=2.8 Score=27.84 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=13.2
Q ss_pred HHHcCCChhHHHHHHHHHhhcCcccHHH
Q 037592 61 GYCQTGDFESVIRIFREMEEIDLFSFGI 88 (337)
Q Consensus 61 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 88 (337)
.+...|++++|..+.+.+.-||...|..
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~A 75 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLA 75 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHH
Confidence 3444555555555554443344444433
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.42 E-value=3 Score=31.90 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A 239 (337)
|+..+.+|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444433
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.34 E-value=12 Score=34.70 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=33.6
Q ss_pred HhcCCChhHHHHHHHHHHhc---CCC------ccchHHHHHHHHHHcCChhhHHHHHH
Q 037592 262 CTTFRNAHVAERVAKKIMEL---KPD------CHLSYVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~---~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
.+-.+++..|....+.+.+. .|. .+..+...+-.+...|+.+.|...|.
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34678898999999888863 222 12334444445566799999999997
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.31 E-value=12 Score=34.77 Aligned_cols=126 Identities=14% Similarity=0.187 Sum_probs=68.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHHhhchhh
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGLAALR 100 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 100 (337)
......|..+.-.|++++|-...-.|...+..-|..-+..+...++......++=.-.. .+...|..++..+.. .+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~ 471 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK 471 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH
Confidence 45666777777778888887777777666666666666666555554433322211111 222345555555544 2221
Q ss_pred hhHHHHHHH--------------H---HhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH
Q 037592 101 LGKEVHCQY--------------I---RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149 (337)
Q Consensus 101 ~a~~~~~~~--------------~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 149 (337)
.-.++.... . +... .+......|+..|...+++.+|..++-....++.
T Consensus 472 ~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~S-e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 472 GFLELIKEWPGHLYSVLTIISATEPQIKQNS-ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHhCChhhhhhhHHHhhcchHHHhhc-cchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 111111100 0 0000 1234445588889999999999999888875543
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.27 E-value=0.48 Score=23.80 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 256 EVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 256 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
-.+..++.+.|++++|.+.|+++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 345677888999999999999999999973
No 320
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.25 E-value=23 Score=37.69 Aligned_cols=66 Identities=8% Similarity=-0.049 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
....|-...+.....|.++.|....-.+.+..+. ..+...+.-+...|+...|+.++++..+....
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 3456778888888999999999988888886644 57788888899999999999999998866553
No 321
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.23 E-value=0.34 Score=23.11 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHcCChhhHHHHHH
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
+...+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44566777777777777777665
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.18 E-value=0.82 Score=37.77 Aligned_cols=53 Identities=13% Similarity=0.042 Sum_probs=31.3
Q ss_pred HHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHh
Q 037592 60 QGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (337)
.-|.++|++++|+.+|..... | +.+++..-..+|.+.+.+..|+.-...++..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 345666666666666666555 4 5556666666666666666555555544443
No 323
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.09 E-value=3.3 Score=33.46 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=69.9
Q ss_pred cCcccHHHHHHHHHh-----hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHH
Q 037592 81 IDLFSFGIVLRACAG-----LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155 (337)
Q Consensus 81 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 155 (337)
.|-.+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+=+..-. | ...+...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi------------P-~nvfQ~~ 131 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI------------P-QNVFQKV 131 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc------------c-HHHHHHH
Confidence 344455555555532 355666777788889999999999999998765432211 1 1112222
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCch
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 200 (337)
...|- .+-+-+++++++|...|+.||..+-..+++++.+.+-.
T Consensus 132 F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 22222 23456789999999999999999999999999877653
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.76 E-value=2 Score=32.83 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=48.1
Q ss_pred HHhcCChHHHHHHHHHcc-cC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh-------cCcccHHHHHHHHHhhchh
Q 037592 31 YGKCGLVDESHRVFDKML-KK---NSVSSSALLQGYCQTGDFESVIRIFREMEE-------IDLFSFGIVLRACAGLAAL 99 (337)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~ 99 (337)
..+.|+ ++|.+.|-.+. .+ ++.....|..-|. ..+.+++..++.+..+ +|+..+..|+..+.+.+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344455 45666665552 22 4444555555554 6678888888888877 5667888889999888888
Q ss_pred hhhH
Q 037592 100 RLGK 103 (337)
Q Consensus 100 ~~a~ 103 (337)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 325
>PRK10941 hypothetical protein; Provisional
Probab=90.56 E-value=2.3 Score=34.46 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 255 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
.+.+-.+|.+.++++.|+++.+.+..+.|+++.-+.--+..|.+.|.+..|..-++...+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 4445567888899999999999999999998877888888888999999998888888776543
No 326
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.53 E-value=16 Score=34.67 Aligned_cols=200 Identities=14% Similarity=0.078 Sum_probs=111.2
Q ss_pred HHhcCCHHHHHHHHhcCC----CCcH-------HhHHHHH-HHHHhCCCHhHHHHHHHHHHhcC----CCCCHhHHHHHH
Q 037592 128 YAKCGCVDFAHQIFLQMP----VRNL-------ITWNSMI-SGFAQNGRGEEALRIFDDMTEGG----TKPDHVSFIGVL 191 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~----~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~ 191 (337)
.....++++|..++.+.. .|+. ..++.+- ......|++++|.++-+.....= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888877654 2221 2344442 33446788999999888776541 122344555566
Q ss_pred HHHhhcCchhhHHHHHHHHHHhcCCCCCH---HHHHHH--HHHHHhcCChHHHH--HHHHHh-----cCCC----chhHH
Q 037592 192 SACSHMGLIDRGRKHFASMTKEYRIKPKI---EHYNCM--VDLLGRAGLLEEAE--TLIENA-----DCRH----DSSLW 255 (337)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l--~~~~~~~g~~~~A~--~~~~~~-----~~~~----~~~~~ 255 (337)
.+..-.|++++|..+.....+. .-.-+. ..|..+ ...+...|+...+. ..|... +.+| -..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 6677789999998888776332 112222 223333 23455667433333 223221 2222 22334
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHh----cCCCccc---hHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 256 EVLLGACTTFRNAHVAERVAKKIME----LKPDCHL---SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 256 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
..+..++.+ .+.+..-.....+ ..|.... .+..|+.++...|+.++|...++++......+.+...|...
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444455443 3333333333222 3343222 22367788888999999999999998877777666666554
Q ss_pred ccc
Q 037592 329 NSK 331 (337)
Q Consensus 329 ~~~ 331 (337)
...
T Consensus 661 ~~~ 663 (894)
T COG2909 661 AYK 663 (894)
T ss_pred HHH
Confidence 433
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.33 E-value=0.8 Score=23.23 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
.+|..++..|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999998764
No 328
>PRK12798 chemotaxis protein; Reviewed
Probab=90.27 E-value=11 Score=32.44 Aligned_cols=185 Identities=14% Similarity=0.162 Sum_probs=113.0
Q ss_pred cCCHHHHHHHHhcCC----CCcHHhHHHHHHH-HHhCCCHhHHHHHHHHHHhcCCCCCH----hHHHHHHHHHhhcCchh
Q 037592 131 CGCVDFAHQIFLQMP----VRNLITWNSMISG-FAQNGRGEEALRIFDDMTEGGTKPDH----VSFIGVLSACSHMGLID 201 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~----~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~ 201 (337)
.|+-++|.+.+..+. .+....|-.|+.+ .....+..+|+++|+...- ..|.. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 689999999998887 3345567777655 4456789999999998765 23432 23333444556788888
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcC---ChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHH
Q 037592 202 RGRKHFASMTKEYRIKPKIEHYN-CMVDLLGRAG---LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKK 277 (337)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 277 (337)
++..+-.....++...|-..-|. .+...+.+.+ ..+.-..++..|...--...|-.+...-.-.|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88877777766665555543333 2333343333 3344445555554333345677777778888999999888888
Q ss_pred HHhcCCCccchHHHHHHHH-----HHcCChhhHHHHHHHHHHhCCc
Q 037592 278 IMELKPDCHLSYVLLDNVY-----RAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 278 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
+..+... ...-...+..| .-..+.+++.+.+..+-...+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 8875433 22222222222 2234566676666665555444
No 329
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.26 E-value=6.1 Score=29.40 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChh
Q 037592 6 KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSV 53 (337)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 53 (337)
.+.+..+.+.|++|+...+..+++.+.+.|++.....++..-.-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk 61 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSK 61 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcH
Confidence 345556666778888888888888888888887777776655444433
No 330
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.23 E-value=5.9 Score=32.62 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=70.6
Q ss_pred hCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC-C------cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh
Q 037592 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-R------NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185 (337)
Q Consensus 113 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 185 (337)
|.+.+..+...++..-....+++.++..+-++.. | +... .+.++.+. .=++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4445555566666666667788888888877762 2 2111 12233222 346778998888888899999999
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
++..+++.+.+.+++..|.++...|+.+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998888777554
No 331
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.13 E-value=0.56 Score=22.78 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=8.9
Q ss_pred HHHhcCCChhHHHHHHHHHHhc
Q 037592 260 GACTTFRNAHVAERVAKKIMEL 281 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~ 281 (337)
..+...|+++.|...+++.++.
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 9 NAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHhhHHHHHHHHHHHHcc
Confidence 3333344444444444444333
No 332
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.08 E-value=0.49 Score=27.39 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 257 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
.+.-++.+.|+++.|.+..+.+++..|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34567899999999999999999999997543
No 333
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.06 E-value=1.5 Score=35.40 Aligned_cols=59 Identities=14% Similarity=0.009 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 256 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+.....|...|.+.+|.++-++++.++|-+...+..|+..+...|+--.|...++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33446689999999999999999999999999999999999999999999988888754
No 334
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.04 E-value=3.4 Score=36.04 Aligned_cols=116 Identities=10% Similarity=0.085 Sum_probs=58.2
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHH
Q 037592 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERV 274 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 274 (337)
.|++-.|.+-+...++...-.|+.....+ ..+...|.++.+...+.... +.....+...++....+.|+++.|...
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45555554444444444333343333222 22445566666666665431 223344556666666666677777666
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 275 AKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 275 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
...|+...-.++.........-...|-++++...|++...
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 6666653322233332323333444556666666666554
No 335
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.86 E-value=7.3 Score=29.69 Aligned_cols=89 Identities=11% Similarity=0.029 Sum_probs=49.7
Q ss_pred HHHHhhchhhhhHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHh--HHHHHHHHHhCCCHh
Q 037592 91 RACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT--WNSMISGFAQNGRGE 166 (337)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 166 (337)
..+...+++++|...++..+......+ ..+--.|.......|.+++|+.+++....++-.. ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 345566677777776666654311111 1111234455666677777777776666553322 333345666677777
Q ss_pred HHHHHHHHHHhcC
Q 037592 167 EALRIFDDMTEGG 179 (337)
Q Consensus 167 ~a~~~~~~m~~~~ 179 (337)
+|+.-|++.++.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777766654
No 336
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.72 E-value=9.8 Score=31.01 Aligned_cols=113 Identities=10% Similarity=0.098 Sum_probs=61.4
Q ss_pred HhHHHHHHHHHHh-cCCCCCHhHHHHHHHHHhh-cC-chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 165 GEEALRIFDDMTE-GGTKPDHVSFIGVLSACSH-MG-LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 165 ~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
.-+|+++|+..-. ..+--|......+++.... .+ ....-.++.+.+....+..++..+....+..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552211 1133355555555554443 11 2222233444444444556666666777777777777777777
Q ss_pred HHHHhc----CCCchhHHHHHHHHHhcCCChhHHHHHHHH
Q 037592 242 LIENAD----CRHDSSLWEVLLGACTTFRNAHVAERVAKK 277 (337)
Q Consensus 242 ~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 277 (337)
+++... ...|...|..+|..-.+.|+..-..++..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 776531 233556677777777777776666555544
No 337
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.55 E-value=12 Score=31.72 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=54.9
Q ss_pred CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCC----CccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 249 RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP----DCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 249 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
.....+|..++..+.+.|.++.|...+.++....+ ..+.....-+......|+..+|+..+++.....+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 34566788888999999999999999999987442 12456666677888889999999999988874443
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.39 E-value=7.5 Score=29.20 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 268 AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
+++|...|+++...+|++ ..|..-++.. .+|-++..++.+++..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 667777777788899995 6777666554 3466666666555443
No 339
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.37 E-value=2.9 Score=27.62 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=19.9
Q ss_pred HHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc
Q 037592 9 HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 47 (337)
++.+....+-|++.+..+.+.+|.+.+++..|+++|+.+
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334444445555555555555555555555555555544
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.34 E-value=2.9 Score=31.29 Aligned_cols=27 Identities=0% Similarity=-0.159 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDM 30 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 30 (337)
+.|.+..+.-...+ +.|...++.-..+
T Consensus 8 E~ark~aea~y~~n-P~DadnL~~WG~A 34 (186)
T PF06552_consen 8 EHARKKAEAAYAKN-PLDADNLTNWGGA 34 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cHhHHHHHHHHHH
Confidence 44555555544443 4444444333333
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.31 E-value=1 Score=21.40 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHh
Q 037592 123 ALVDLYAKCGCVDFAHQIFL 142 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~ 142 (337)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 342
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.20 E-value=3 Score=27.88 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=15.6
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 50 KNSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
|++....+.+.+|.+.+++..|+++|+-++.
T Consensus 43 P~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 43 PEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555555555555555555544
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.80 E-value=2.4 Score=32.86 Aligned_cols=72 Identities=14% Similarity=0.021 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH-hcCCCch-hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc---chHHHHHH
Q 037592 223 YNCMVDLLGRAGLLEEAETLIEN-ADCRHDS-SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH---LSYVLLDN 294 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 294 (337)
.+.-+..+.+.+++.+|+...+. .+.+|+. ..-..++..++-.|++++|..-++-.-++.|+.. ..|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34456677888899999998875 5666644 4455677889999999999999988888888853 24444444
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.73 E-value=12 Score=30.60 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=52.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh-----cCCCCCHhHH
Q 037592 120 IESALVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGEEALRIFDDMTE-----GGTKPDHVSF 187 (337)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 187 (337)
+++.....|..+|.+.+|.++-++... .+...+..|+..+...|+--.+.+-++++.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 445567789999999999999998873 3667888999999999998888888887754 3666555443
No 345
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.67 E-value=13 Score=30.88 Aligned_cols=126 Identities=11% Similarity=0.136 Sum_probs=70.3
Q ss_pred hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh--cC----CHHHHHHHHhcCC-------CCcHHhHHHHHHHHHhCCC-
Q 037592 99 LRLGKEVHCQYIRRSGCKDVIIESALVDLYAK--CG----CVDFAHQIFLQMP-------VRNLITWNSMISGFAQNGR- 164 (337)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~- 164 (337)
+++...+++.+.+.|+..+..++-+....... .. ...+|..+++.|+ .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888887766555443222222 12 2456778888887 2233444444432 3333
Q ss_pred ---HhHHHHHHHHHHhcCCCCCHh--HHHHHHHHHhhcCc--hhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 165 ---GEEALRIFDDMTEGGTKPDHV--SFIGVLSACSHMGL--IDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 165 ---~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
.+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+..+++.+ ++.|+++....|..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l-~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL-KKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH-HHcCCccccccccHHH
Confidence 355667777777777765443 23333322222222 34677777777 5558888777766554
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.55 E-value=0.93 Score=25.02 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.6
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 291 LLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 291 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.|..+|...|+.+.|.+++++....|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 578899999999999999999886544
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.26 E-value=2.1 Score=37.28 Aligned_cols=109 Identities=6% Similarity=0.030 Sum_probs=79.3
Q ss_pred hHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc---ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM---LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 5 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
..++++.+....-.|+.....+ ..+...|+++.+...+... +.....+..+++....+.|++++|..+-+-|..
T Consensus 309 s~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 309 SQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 3466666666655666554443 4466789999999888765 444667788999999999999999999999987
Q ss_pred --cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC
Q 037592 81 --IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115 (337)
Q Consensus 81 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 115 (337)
.+...........-+.|-++++...|+++...+++
T Consensus 387 eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 387 EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 34444444444456677889999999998877653
No 348
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=88.20 E-value=6.1 Score=26.69 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=5.8
Q ss_pred HHHHcCCChhHH
Q 037592 60 QGYCQTGDFESV 71 (337)
Q Consensus 60 ~~~~~~g~~~~A 71 (337)
..+..+|++++|
T Consensus 48 ~sLmNrG~Yq~A 59 (116)
T PF09477_consen 48 SSLMNRGDYQEA 59 (116)
T ss_dssp HHHHHTT-HHHH
T ss_pred HHHHhhHHHHHH
Confidence 344555555555
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.08 E-value=19 Score=32.08 Aligned_cols=175 Identities=12% Similarity=0.089 Sum_probs=93.8
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
|.....+++..+....++.-+..+..+|. ..+...|..++++|..+ ..++-..+|+++.+..+ +...+..-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHH
Confidence 44445556666666666666666666655 34555666677777766 55666777777766533 333333333333
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHh----cCCCchhHHHHHHHHHhc
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKPK------IEHYNCMVDLLGRAGLLEEAETLIENA----DCRHDSSLWEVLLGACTT 264 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~ 264 (337)
...++...+..+|..++.+ +-|. ...|..+.... ..+.+....+..++ +..--...+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3446666666666666443 1221 12333333211 23444444444432 322233344444455777
Q ss_pred CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
..++.+|++++..+++.+..+..+-..++.-+..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 7777777777777777665555555555544433
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.05 E-value=6 Score=26.39 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=45.6
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
..++|..+-+.+...+- ....+--+-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.+|-.
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34555555555444321 122222223345666777777777777777777777766654 355666666666666665
Q ss_pred cC
Q 037592 178 GG 179 (337)
Q Consensus 178 ~~ 179 (337)
.|
T Consensus 97 sg 98 (115)
T TIGR02508 97 SG 98 (115)
T ss_pred CC
Confidence 54
No 351
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.87 E-value=11 Score=31.21 Aligned_cols=131 Identities=10% Similarity=0.014 Sum_probs=87.4
Q ss_pred HhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc--------------ccCChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 037592 13 ITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--------------LKKNSVSSSALLQGYCQTGDFESVIRIFREM 78 (337)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (337)
....++|...-|- |.+.|.....|+.-....-.+ ...+..+-..++..--...+++.++.++-++
T Consensus 12 ~~~~l~p~~rr~~-LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKl 90 (418)
T KOG4570|consen 12 VLPQLSPAGRRYL-LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKL 90 (418)
T ss_pred hhhcCCchhcchh-hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHH
Confidence 3355666555443 556666666665433322111 1223444555666666678899999988888
Q ss_pred hh-cCc-----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 79 EE-IDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 79 ~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
+. |+. .+-..+++.|. .-+.++++.++..=+..|+.||..+++.+++.+.+.+++.+|.++.-.|.
T Consensus 91 Rhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 91 RHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 76 332 23334444443 33566888888888899999999999999999999999999998877766
No 352
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.55 E-value=13 Score=29.90 Aligned_cols=236 Identities=12% Similarity=0.133 Sum_probs=142.2
Q ss_pred chhhHHHHHHHHhcCCCC---chHhHHHHHHHHHhcCChHHHHHHHHHccc-------C--ChhhHHHHHHHHHcCCChh
Q 037592 2 LKQGKEVHAKVITLGLCG---NVVVESSLVDMYGKCGLVDESHRVFDKMLK-------K--NSVSSSALLQGYCQTGDFE 69 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~~~ 69 (337)
+++|+.-|.+.++..-.. .-.+...++..+.+.|++++....+.++.. + +..+.|+++.--....+.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 578888999988763222 234556778899999999999999988821 1 4556777777666666666
Q ss_pred HHHHHHHHHhh-----cCcc----cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCC-----------CchhHHHHHHHHH
Q 037592 70 SVIRIFREMEE-----IDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-----------DVIIESALVDLYA 129 (337)
Q Consensus 70 ~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~ 129 (337)
.-.++|+.-.. .+.. |-..+...|...+.+.+...+++++....... -..+|..-+..|.
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT 202 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYT 202 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhh
Confidence 55555554433 2222 34567788889999999999999887764322 1356666677888
Q ss_pred hcCCHHHHHHHHhcCC-----CCcHHhHHHHH----HHHHhCCCHhHHHHHHHHH-Hh---cCCCCCHh---HHHHHHHH
Q 037592 130 KCGCVDFAHQIFLQMP-----VRNLITWNSMI----SGFAQNGRGEEALRIFDDM-TE---GGTKPDHV---SFIGVLSA 193 (337)
Q Consensus 130 ~~g~~~~A~~~~~~~~-----~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~m-~~---~~~~p~~~---~~~~l~~~ 193 (337)
...+-.+-..++++.. -|.+.....+- ....+.|++++|..-|-+. +. .| .|-.. -|..+.+.
T Consensus 203 ~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANM 281 (440)
T KOG1464|consen 203 EQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANM 281 (440)
T ss_pred hhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHH
Confidence 8877777777777665 23333322221 2235678898886544443 32 23 23222 34444455
Q ss_pred HhhcCc--hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 194 CSHMGL--IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 194 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
+.+.|- ++. +++ +-+.-.|.....+.|+.+|.. +++.+-++++..
T Consensus 282 LmkS~iNPFDs-----QEA-KPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 282 LMKSGINPFDS-----QEA-KPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHcCCCCCcc-----ccc-CCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 554442 111 011 111224556677888888754 456666666653
No 353
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=87.03 E-value=4.6 Score=26.11 Aligned_cols=65 Identities=8% Similarity=0.035 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 168 (337)
+.+++..+++.|+ -+..-...+-.+-...|+.+.|.+++..+. ..+..|..+++++...|.-.-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4556666666665 333333333222235577777888887777 7777777777777777665544
No 354
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.75 E-value=12 Score=29.66 Aligned_cols=57 Identities=11% Similarity=-0.104 Sum_probs=37.8
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.++...|++-++++-..+++...|.+..+|..-+.+....=+.++|..-|....+..
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 344566677777777777777777777777776666666666666666666655533
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.43 E-value=1.8 Score=23.88 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=12.3
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHh
Q 037592 155 MISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555543
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.42 E-value=9.1 Score=34.47 Aligned_cols=139 Identities=11% Similarity=-0.043 Sum_probs=89.4
Q ss_pred CCchHhHHHHHHHHHhc--CChHHHHHHHHHcccCChhhHHHH--HHH-HHcCCChhHHHHHHHHHhh----cCcccHHH
Q 037592 18 CGNVVVESSLVDMYGKC--GLVDESHRVFDKMLKKNSVSSSAL--LQG-YCQTGDFESVIRIFREMEE----IDLFSFGI 88 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~l--~~~-~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 88 (337)
.|+..+..+++.-.... ...+.+-.+|..|.+++...|-.| ... +...|+...|..++..... ...+....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 45555555554443332 234456667777777766655432 222 3456888888888887765 23345666
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC---CcHHhHHHHHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMIS 157 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 157 (337)
|.....+.|-.-.|-.++.+.+... ...+.++..+.++|....++++|++.|++... .+...-+.|..
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 7777777777778888888777766 35666777788888888888888888877663 23444444443
No 357
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.15 E-value=0.64 Score=38.32 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=56.8
Q ss_pred hcCChHHHHHHHHH-hcCCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHH
Q 037592 232 RAGLLEEAETLIEN-ADCRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 232 ~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
..|.++.|++.|.. +...|. ...|.--..++.+.+++..|++-+..+.+++|+....|-.-..+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 45667777776664 233332 2233333455677777777777777777777777666666666777777777777777
Q ss_pred HHHHHhCCcc
Q 037592 310 TLMKYSGVKK 319 (337)
Q Consensus 310 ~~m~~~~~~~ 319 (337)
....+.++.+
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 7777766654
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.90 E-value=33 Score=32.74 Aligned_cols=219 Identities=12% Similarity=-0.022 Sum_probs=118.1
Q ss_pred HHhhchhhhhHHHHHHHHHhhCCCCch-------hHHHHH-HHHHhcCCHHHHHHHHhcCC--------CCcHHhHHHHH
Q 037592 93 CAGLAALRLGKEVHCQYIRRSGCKDVI-------IESALV-DLYAKCGCVDFAHQIFLQMP--------VRNLITWNSMI 156 (337)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~ 156 (337)
.....++.+|..++.++...-..|+.. .++.|- ......|+.++|.++.+... .+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 355678999999998887764443321 222222 22345688888888776554 23556777788
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHH---HHH--HHHhhcCch--hhHHHHHHHHHHhcCCC-----CCHHHHH
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI---GVL--SACSHMGLI--DRGRKHFASMTKEYRIK-----PKIEHYN 224 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l~--~~~~~~~~~--~~a~~~~~~~~~~~~~~-----~~~~~~~ 224 (337)
.+..-.|++++|..+..+..+....-+...+. .+. ..+...|+. .+....+...-...... +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999999888776542233333332 222 234456633 22333333331111111 1223444
Q ss_pred HHHHHHHh-cCChHHHHHHHHHh---cCCCchhHH--HHHHHHHhcCCChhHHHHHHHHHHh--cCCCccchHHH-----
Q 037592 225 CMVDLLGR-AGLLEEAETLIENA---DCRHDSSLW--EVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVL----- 291 (337)
Q Consensus 225 ~l~~~~~~-~g~~~~A~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~----- 291 (337)
.+..++.+ .+...++..-++-. ...|-.... ..++......|+.+.|...+.++.. ..+.....|..
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 45555544 11222222222211 111222222 3566888999999999999999887 33321222222
Q ss_pred HHHHHHHcCChhhHHHHHHH
Q 037592 292 LDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 292 l~~~~~~~g~~~~A~~~~~~ 311 (337)
-.......|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22234556787777766655
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.86 E-value=6.8 Score=30.48 Aligned_cols=77 Identities=9% Similarity=0.043 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh-cCCCCCHHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDL 229 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 229 (337)
.+.-++.+.+.+...+++...++-.+..+ .+..+-..++..+|-.|++++|..-++-..+- ....+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777788888888888877766532 24445556678888888888888777766321 0112234555555543
No 360
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.65 E-value=3.4 Score=27.08 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc--cchHHHHHHHHHHcCChh
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC--HLSYVLLDNVYRAVGRWN 303 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 303 (337)
|...-..+...+...|+++.|++.+-++.+.+|+. ...-..|+..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 33445555666777777777777777777755442 455666777776666644
No 361
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.22 E-value=33 Score=32.12 Aligned_cols=94 Identities=9% Similarity=-0.111 Sum_probs=51.9
Q ss_pred HHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcC---CCccchHHHHHHHHHHcCChh
Q 037592 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK---PDCHLSYVLLDNVYRAVGRWN 303 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 303 (337)
+..+...|....|...+..+....+......+.....+.|.++.++.........+ -..+..|...+..+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34455667777777777665333444555555566667777777776665443211 011234666666666655566
Q ss_pred hHHHHHHHHHHhCCccC
Q 037592 304 DAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 304 ~A~~~~~~m~~~~~~~~ 320 (337)
.++-.---..++++.|.
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 55533222335666553
No 362
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.11 E-value=29 Score=31.40 Aligned_cols=118 Identities=16% Similarity=-0.001 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-----cCCCchhHHHHHH
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-----DCRHDSSLWEVLL 259 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~ 259 (337)
.+|...+..-...|+.+.+.-++++.+.- +..-...|-..+.-....|+.+-|..++... +..|......+.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~- 374 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR- 374 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH-
Confidence 34555555555666666666666665431 1223344444444444456666666655532 112222211111
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHH
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 306 (337)
..-..|+++.|..+++...+-.|+....-..-+....+.|..+.+.
T Consensus 375 -f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 -FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred -HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 1344567777777777776644664444444444555566666665
No 363
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.90 E-value=42 Score=33.02 Aligned_cols=255 Identities=9% Similarity=-0.084 Sum_probs=137.7
Q ss_pred HHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCch
Q 037592 41 HRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119 (337)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 119 (337)
..+.+.+.++++.+-...+..+.+.+..+ +...+..+.. +|...-...+.++...+........+..+++. ++..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~ 699 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPV 699 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHH
Confidence 34445556777777777777777776544 5555555544 66555555555555544322233344444433 5555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
+-...+..+...+.- ....+...+..+|...-...+.++...+..+. +.... ..++...-...+.++...+.
T Consensus 700 VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 700 VRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhcc
Confidence 555666666544321 12344555567777766667777766654432 22222 23455555555666666655
Q ss_pred hhh-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 200 IDR-GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 200 ~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
.+. +...+..++. .++.......+.++...|..+.+...+...-..++...-...+.++...+. +++...+..+
T Consensus 772 ~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 772 GGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred ccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 432 3444555533 456777778888888888765554444333233454444455666666654 3444444444
Q ss_pred HhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 279 MELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 279 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
++ +|+ ...-...+.++.+.+....+...+....+
T Consensus 847 L~-D~~-~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 847 LT-DPH-LDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hc-CCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 42 344 44555556666554333455555554443
No 364
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.90 E-value=31 Score=31.61 Aligned_cols=113 Identities=14% Similarity=0.011 Sum_probs=53.8
Q ss_pred cCCChhHHHHHHHHHhh--------cCcccHHHHHHHHHhhc-----hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 037592 64 QTGDFESVIRIFREMEE--------IDLFSFGIVLRACAGLA-----ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130 (337)
Q Consensus 64 ~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (337)
...+++.|+.+|+.+.+ -+.....-+..+|.+.. +...|..++.+..+.|. |+.... +..++..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~ 337 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYET 337 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHc
Confidence 44555555555555432 22334444555554432 44556666666666554 333322 2222222
Q ss_pred c---CCHHHHHHHHhcCCC-CcHHhHHHHHHHHH----hCCCHhHHHHHHHHHHhcC
Q 037592 131 C---GCVDFAHQIFLQMPV-RNLITWNSMISGFA----QNGRGEEALRIFDDMTEGG 179 (337)
Q Consensus 131 ~---g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~ 179 (337)
. .+..+|.++|...-. -...++-.+..+|. ...+...|..++.+.-+.|
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 2 245566666665552 22333322332222 2345666777777766665
No 365
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.67 E-value=28 Score=30.84 Aligned_cols=104 Identities=15% Similarity=0.046 Sum_probs=73.9
Q ss_pred HHHHhcCCHHHHHHHHhcCC---C------C---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHh-------cCCCCC---
Q 037592 126 DLYAKCGCVDFAHQIFLQMP---V------R---NLITWNSMISGFAQNGRGEEALRIFDDMTE-------GGTKPD--- 183 (337)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~---~------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~~~~p~--- 183 (337)
..+.-.|++.+|.+++...- . | ....||.|.-.+.+.|.+.-+..+|.+..+ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 45666799999999887654 1 1 223467777777788888877777777664 455543
Q ss_pred --------HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037592 184 --------HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 184 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (337)
..+|+.-+ .+...|++-.|.+.|.+....+ ..++..|..|..+|..
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHH
Confidence 23455444 4667899999999999987754 6788899999888753
No 366
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.58 E-value=2.3 Score=20.99 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=21.8
Q ss_pred CChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 266 RNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 266 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
|+.+.+..+|+++....|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777766554
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.39 E-value=4.3 Score=25.67 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=8.3
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 037592 224 NCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~ 242 (337)
..|+.+|+..|++++++++
T Consensus 47 G~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 368
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.36 E-value=25 Score=30.11 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=44.6
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCC-ccchHHHHHHHH-HHcCChhhHHHHHHHHHH
Q 037592 259 LGACTTFRNAHVAERVAKKIMELKPD-CHLSYVLLDNVY-RAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 259 ~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~ 314 (337)
+..+.+.|-+..|.++.+-+..++|. |+..-..+++.| .++++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 46688999999999999999999998 777666666665 566788888888876654
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.09 E-value=1.7 Score=27.44 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=32.5
Q ss_pred cCCChhHHHHHHHHHHhcCCCccc---hHHHHHHHHHHcCChhhHHHHH
Q 037592 264 TFRNAHVAERVAKKIMELKPDCHL---SYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
...+.++|+..|+.+++..++.+. ++..|+.+|+..|++.+++.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888888888875555333 4556667788888888877653
No 370
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=83.99 E-value=9.2 Score=24.76 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=38.0
Q ss_pred hHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHH
Q 037592 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVI 72 (337)
Q Consensus 5 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 72 (337)
+.++++.+.+.|+- +......+-..-...|+.+.|.++++.+. +.+..|...+.++...|+-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44566666666622 22222322222234577777777777777 66677777777777766655543
No 371
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.14 E-value=33 Score=30.44 Aligned_cols=106 Identities=12% Similarity=-0.038 Sum_probs=66.2
Q ss_pred HhhcCchhhHHHHHHHHH--HhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHh----------cCCCc-----
Q 037592 194 CSHMGLIDRGRKHFASMT--KEYRIKPK-----IEHYNCMVDLLGRAGLLEEAETLIENA----------DCRHD----- 251 (337)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~--~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~~~----- 251 (337)
+.-.|++.+|.+++...- +..|...+ ...||.|...+.+.|.+.-+..+|.+. +.+|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 345688888888775531 11121112 223466666666777776666666542 22221
Q ss_pred --hhHHHHH---HHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHc
Q 037592 252 --SSLWEVL---LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299 (337)
Q Consensus 252 --~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 299 (337)
...+..+ .-.|...|++-.|.+.|.+.......+|..|..|.++|...
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1112222 23477899999999999999997766699999999998764
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.66 E-value=6.8 Score=35.23 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=55.6
Q ss_pred cCchhhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHH-hcC-CCchhHHHHHHHHHhcCCChhHHH
Q 037592 197 MGLIDRGRKHFASMTKEYRIKPK--IEHYNCMVDLLGRAGLLEEAETLIEN-ADC-RHDSSLWEVLLGACTTFRNAHVAE 272 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~a~ 272 (337)
.|+...|.+.+..+... .|- ......|.+.+.+.|..-.|-.++.+ +.+ ...+.++..+..++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 46666666666665432 222 12334455556666666666666553 221 223445556666777777777777
Q ss_pred HHHHHHHhcCCCccchHHHHHH
Q 037592 273 RVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
+.|+++.+..|+++.+-+.|..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHH
Confidence 7777777777777666555543
No 373
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.45 E-value=9 Score=31.84 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH-hc---CC--CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 223 YNCMVDLLGRAGLLEEAETLIEN-AD---CR--HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~-~~---~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
|.-=+.-|.+.+++..|...|.+ +. .. .+...|+.-..+-...|++..++.-...++.++|.+..+|..=..++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 33345567888899999999875 32 11 23445655556667788999999999999999999988988888888
Q ss_pred HHcCChhhHHHHHHHH
Q 037592 297 RAVGRWNDAFKIRTLM 312 (337)
Q Consensus 297 ~~~g~~~~A~~~~~~m 312 (337)
....++++|....++.
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888877777766554
No 374
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.10 E-value=24 Score=28.07 Aligned_cols=118 Identities=9% Similarity=-0.082 Sum_probs=68.7
Q ss_pred HHhcCCHHHHHHHHhcCC--CCcH-HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH-HHHhhcCchhhH
Q 037592 128 YAKCGCVDFAHQIFLQMP--VRNL-ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL-SACSHMGLIDRG 203 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~~~~~~a 203 (337)
|....+++.|+..+.+.. .|++ .-|+.-+.++.+..+++.+..--.+.++ +.|+.+--..++ .+......++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 334456667777666655 4444 3456667777777777777766666666 456655433333 444556667777
Q ss_pred HHHHHHHH---HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc
Q 037592 204 RKHFASMT---KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247 (337)
Q Consensus 204 ~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 247 (337)
+..+.++. +...+++.......|..+--..-...+..++.++..
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 77777652 222334444555555555555555556666666654
No 375
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=81.83 E-value=13 Score=26.04 Aligned_cols=72 Identities=13% Similarity=0.236 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
+..+-+..+....+.|+.......+.+|.+.+++..|.++++-+ +. .+.+....|-.++ ++..-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i-K~-K~g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAI-KD-KCGAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH-HH-hcccHHHHHHHHH---------HHHHHHHHHh
Confidence 34445556666678888888888889999999999999999888 43 3334444455444 3445556666
Q ss_pred cCC
Q 037592 247 DCR 249 (337)
Q Consensus 247 ~~~ 249 (337)
|+.
T Consensus 136 GI~ 138 (149)
T KOG4077|consen 136 GIP 138 (149)
T ss_pred CCC
Confidence 543
No 376
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=81.79 E-value=14 Score=25.11 Aligned_cols=81 Identities=7% Similarity=0.017 Sum_probs=43.9
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHH
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 175 (337)
....++|..+.+.+...+. ....+--+-+..+.+.|++++|+..=.....||...|.+|.. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456677777766666543 222233333445667777777744444444667777665544 4667777777777766
Q ss_pred HhcC
Q 037592 176 TEGG 179 (337)
Q Consensus 176 ~~~~ 179 (337)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 5543
No 377
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.57 E-value=23 Score=27.67 Aligned_cols=180 Identities=11% Similarity=-0.004 Sum_probs=100.5
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHH---hHHHHHHHHHhCCCHhHHHH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI---TWNSMISGFAQNGRGEEALR 170 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~ 170 (337)
-..|-+..|.--|.+.+...+ .-+.+||-|.-.+...|+++.|.+.|+...+.|+. +...-.-++.-.|++.-|.+
T Consensus 76 DSlGL~~LAR~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 344555556666666665543 34678888888889999999999999988855432 22222233445688888888
Q ss_pred HHHHHHhcCCC-CCHhHHHHHHHHHhhcCchhhHHHHH-HHHHHhcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHhc
Q 037592 171 IFDDMTEGGTK-PDHVSFIGVLSACSHMGLIDRGRKHF-ASMTKEYRIKPKIEHYNC-MVDLLGRAGLLEEAETLIENAD 247 (337)
Q Consensus 171 ~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 247 (337)
-|.+.-+.... |-...|.-+. -..-++.+|..-+ ++. + + .+..-|.. ++..|...=..+.+.+-...-.
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~-~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a 226 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRA-E--K--SDKEQWGWNIVEFYLGKISEETLMERLKADA 226 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHH-H--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhc
Confidence 77777665322 2122222222 2334455555433 333 2 2 33334432 2333332222222222222111
Q ss_pred C------CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 037592 248 C------RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282 (337)
Q Consensus 248 ~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 282 (337)
. ..-..||--+..-+...|+.++|..+|+-++..+
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1 0123456667777889999999999999887633
No 378
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=81.00 E-value=26 Score=27.81 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=35.4
Q ss_pred HHhcCCHHHHHHHHhcCC----------------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH
Q 037592 128 YAKCGCVDFAHQIFLQMP----------------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 184 (337)
+...|++.+|+..++... .|.+.....++..| ..+++++|.+++.++.+.|..|..
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH
Confidence 455677777776665433 45555555555544 346777777777777777777644
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=80.67 E-value=37 Score=29.39 Aligned_cols=52 Identities=6% Similarity=-0.013 Sum_probs=27.0
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHh--HHHHHHHHHh--hcCchhhHHHHHHHHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHV--SFIGVLSACS--HMGLIDRGRKHFASMT 211 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~ 211 (337)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34566666666666666654 343333 2333333333 2445556666666553
No 380
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=80.56 E-value=2.2 Score=37.04 Aligned_cols=95 Identities=9% Similarity=-0.027 Sum_probs=62.8
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHH-hcCCCch-hHHHHHHHHHhcCCC
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM-VDLLGRAGLLEEAETLIEN-ADCRHDS-SLWEVLLGACTTFRN 267 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~ 267 (337)
+......+.++.|..++.+++ ...||...|.+. ..++.+.+++..|+.=+.+ +...|+- ..|..=..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 455567788999999999887 446765555332 3677888888888766554 4444432 222222345666777
Q ss_pred hhHHHHHHHHHHhcCCCccch
Q 037592 268 AHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~~~~~ 288 (337)
+.+|...|+....+.|+++..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHH
Confidence 888888888888888996433
No 381
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.33 E-value=42 Score=29.79 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=74.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhh-----cCcc-------cHHHHHHH-HHhhchhhhhHHHHHHHHHhhCCCCchhH--
Q 037592 57 ALLQGYCQTGDFESVIRIFREMEE-----IDLF-------SFGIVLRA-CAGLAALRLGKEVHCQYIRRSGCKDVIIE-- 121 (337)
Q Consensus 57 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-------~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-- 121 (337)
.++-+-.-.|++.+|++-...|.+ |... ....++.. +...+.++.|+.-|....+.--..+...+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444567999999999999887 4321 12233333 34567788888888777765433343333
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHH--------HHHH--HHhCCCHhHHHHHHHHHHhc
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS--------MISG--FAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------l~~~--~~~~~~~~~a~~~~~~m~~~ 178 (337)
..+.-.|.+.|+.+.-.++++.+..++..++.. ++.+ ....+++.+|...+.+-.+.
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 235667888888888888888777664433221 1111 23567788888777776553
No 382
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.00 E-value=32 Score=28.19 Aligned_cols=49 Identities=12% Similarity=-0.006 Sum_probs=25.5
Q ss_pred HHHHhhchhhhhHHHHHHHHHhhCCCCch-------hHHHHHHHHHhcCCHHHHHH
Q 037592 91 RACAGLAALRLGKEVHCQYIRRSGCKDVI-------IESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~ 139 (337)
+-..+.+++++|+..|.+++..|...+.. +...+...|.+.|++..-.+
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 33445556666666666666655543322 22345556666666544333
No 383
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.54 E-value=32 Score=27.95 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=42.0
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHh
Q 037592 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195 (337)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 195 (337)
-++..+..+...|.+.|++.+|+..|-.-..++...+..++......|...++ +...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 35677777888888888888888777555444443332233222222222222 111112222 344
Q ss_pred hcCchhhHHHHHHHHHHh
Q 037592 196 HMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~ 213 (337)
..++...|...+....+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567777777777666543
No 384
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.25 E-value=52 Score=30.24 Aligned_cols=178 Identities=13% Similarity=0.008 Sum_probs=101.0
Q ss_pred HHHHHHHHhcCCC-CcHHhHHHHHHH-----HHhCCCHhHHHHHHHHHHh-------cCCCCCHhHHHHHHHHHhhcC--
Q 037592 134 VDFAHQIFLQMPV-RNLITWNSMISG-----FAQNGRGEEALRIFDDMTE-------GGTKPDHVSFIGVLSACSHMG-- 198 (337)
Q Consensus 134 ~~~A~~~~~~~~~-~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 198 (337)
...|..+++.... .+......+..+ +....+.+.|+.+|+.+.+ .|. ......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCC
Confidence 4567777766653 334433333333 3456788999999988866 442 234445555665532
Q ss_pred ---chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHhcCCCchhHHHHHHHHH----hcCCCh
Q 037592 199 ---LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA---GLLEEAETLIENADCRHDSSLWEVLLGAC----TTFRNA 268 (337)
Q Consensus 199 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~ 268 (337)
+.+.|..++.... ..| .|+.... +...+... .+...|.++|......-.....-.+..+| .-..+.
T Consensus 305 ~~~d~~~A~~~~~~aA-~~g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAA-ELG-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHH-hcC-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 5677888888873 323 3443333 33333332 35778999988754332333333322222 234478
Q ss_pred hHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCcc
Q 037592 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 319 (337)
..|..+++++.+..+.....-...+..+.. ++++.+.-.+..+.+.|...
T Consensus 381 ~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH
Confidence 888999988888663311111222223333 77888887777777776653
No 385
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.94 E-value=44 Score=29.21 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCCCCchHh--HHHHHHHHHhcCChHHHHHHHHHcccCChh--hHHHHHHHHHcCCChhHHHHHHHHHhhc
Q 037592 6 KEVHAKVITLGLCGNVVV--ESSLVDMYGKCGLVDESHRVFDKMLKKNSV--SSSALLQGYCQTGDFESVIRIFREMEEI 81 (337)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 81 (337)
.++++.+++.|..|+... ..+.+...+..|+.+-+.-+++.-..++.. .....+...+..|+.+.+..+++.-...
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc
Confidence 356677778887776543 344566667888888776666554333211 1123455566788888776666543221
Q ss_pred ----CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchh--HHHHHHHHHhcCCHHHHHHHHhcCCCC---cHHhH
Q 037592 82 ----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII--ESALVDLYAKCGCVDFAHQIFLQMPVR---NLITW 152 (337)
Q Consensus 82 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 152 (337)
+..-. +.+...+..|+. ++.+.+++.|..++... -.+.+...+..|+.+-+..+++.-..+ |...+
T Consensus 95 ~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~ 169 (413)
T PHA02875 95 DDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGC 169 (413)
T ss_pred cccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Confidence 11112 223333445554 45555566666554321 123455566788888777777654422 33333
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH
Q 037592 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 184 (337)
+.|..+ +..|+.+ +.+.+.+.|..|+.
T Consensus 170 TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~ 196 (413)
T PHA02875 170 TPLIIA-MAKGDIA----ICKMLLDSGANIDY 196 (413)
T ss_pred CHHHHH-HHcCCHH----HHHHHHhCCCCCCc
Confidence 333333 3445543 44445666666553
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=78.75 E-value=5 Score=24.12 Aligned_cols=29 Identities=17% Similarity=0.380 Sum_probs=15.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
|-...-.+|.++...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334445566666666666666665543
No 387
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=78.55 E-value=72 Score=31.46 Aligned_cols=247 Identities=13% Similarity=0.023 Sum_probs=138.3
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHHhh
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGL 96 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~ 96 (337)
.+|..+-...+..+.+.+..+....+...+.+++...-...+.++.+.+........+..+.. +|...-...+.++...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRAL 711 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 556666666677777776644333344444555555555555555444322222233333333 6666666666666554
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhH-HHHHHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE-ALRIFDDM 175 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m 175 (337)
+..+ . ..+-++++ .++..+-...+.++.+.+..+. +......++...-...+.++...+..+. +...+..+
T Consensus 712 ~~~~-~-~~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~l 783 (897)
T PRK13800 712 RAGD-A-ALFAAALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRAL 783 (897)
T ss_pred ccCC-H-HHHHHHhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 3221 2 22322332 2566666666666666655432 3333456677777777777777665443 34555555
Q ss_pred HhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHH
Q 037592 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLW 255 (337)
Q Consensus 176 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 255 (337)
.+ .++...-...+.++.+.|..+.+...+..++. .++..+-...+.++...+.. ++...+..+-..|+...-
T Consensus 784 l~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D~~~~VR 855 (897)
T PRK13800 784 TG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPALVEALTDPHLDVR 855 (897)
T ss_pred hc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHHHHHHhcCCCHHHH
Confidence 54 35666666777788888876555444555543 35666777777888777753 455555544445566555
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 256 EVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 256 ~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
...+.++.+.+....+...+..+.+
T Consensus 856 ~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 856 KAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5666666665444556666665555
No 388
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.31 E-value=59 Score=30.33 Aligned_cols=172 Identities=11% Similarity=0.090 Sum_probs=104.9
Q ss_pred hhHHHHHHHH-hcCCCCch--HhHHHHHHHHH-hcCChHHHHHHHHHccc----CCh-----hhHHHHHHHHHcCCChhH
Q 037592 4 QGKEVHAKVI-TLGLCGNV--VVESSLVDMYG-KCGLVDESHRVFDKMLK----KNS-----VSSSALLQGYCQTGDFES 70 (337)
Q Consensus 4 ~a~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~~~~~~A~~~~~~~~~----~~~-----~~~~~l~~~~~~~g~~~~ 70 (337)
.|++-++.+. +..++|.. .++-.+...+. ...+++.|...+++... ++. .....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 4667777777 44455543 45666777776 67899999999998722 221 12345667777777666
Q ss_pred HHHHHHHHhh--c--CcccHH----HH-HHHHHhhchhhhhHHHHHHHHHhh---CCCCchhHHHHHHHHH--hcCCHHH
Q 037592 71 VIRIFREMEE--I--DLFSFG----IV-LRACAGLAALRLGKEVHCQYIRRS---GCKDVIIESALVDLYA--KCGCVDF 136 (337)
Q Consensus 71 A~~~~~~~~~--~--~~~~~~----~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~ 136 (337)
|...+++..+ . ....|. .+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 9999999877 1 122222 22 222223378999999998887654 2244455555555444 4455566
Q ss_pred HHHHHhcCC-------------CCcHHhHHHHHHHH--HhCCCHhHHHHHHHHHH
Q 037592 137 AHQIFLQMP-------------VRNLITWNSMISGF--AQNGRGEEALRIFDDMT 176 (337)
Q Consensus 137 A~~~~~~~~-------------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~m~ 176 (337)
+.+.++++. .|-..+|..++..+ ...|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665542 23445677776554 46788777777666553
No 389
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.02 E-value=15 Score=28.07 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=17.9
Q ss_pred CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCC
Q 037592 248 CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283 (337)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 283 (337)
..|++..+..++.++...|+.++|.+..+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344444444445555555555555555555554444
No 390
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=76.72 E-value=31 Score=26.34 Aligned_cols=58 Identities=10% Similarity=0.206 Sum_probs=35.3
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHHhc-------C------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 189 GVLSACSHMGLIDRGRKHFASMTKEY-------R------IKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~-------~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
+++..|.+.-++.++.++++.+.+-. | ..+.-...|.....+.+.|.++.|..++++-
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 35556667777777777777763220 1 1223345566666777777777777777653
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.63 E-value=8 Score=29.65 Aligned_cols=47 Identities=13% Similarity=0.062 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+...+..++..+..|+ +..|..++.++...|+.++|.+..+++...-
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444555666667898 8999999999999999999999999887643
No 392
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.38 E-value=7 Score=30.63 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=25.2
Q ss_pred HhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 231 GRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
.+.++.+.|.+++.+. ... .....|-.+...--+.|+++.|.+.|++..+++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3444445555554442 221 123344444444445555555555555555555554
No 393
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.37 E-value=68 Score=30.29 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=16.3
Q ss_pred HHHhCCCHhHHHHHHHHHHhcCCCCCHh
Q 037592 158 GFAQNGRGEEALRIFDDMTEGGTKPDHV 185 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 185 (337)
.|...+..+.|.+.|++..+ +.|+..
T Consensus 296 ~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 296 NYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred CCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 34455666777778877766 455443
No 394
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.22 E-value=41 Score=27.46 Aligned_cols=84 Identities=8% Similarity=-0.033 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcC----CCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh---
Q 037592 124 LVDLYAKCGCVDFAHQIFLQM----PVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH--- 196 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--- 196 (337)
=|.+++..++|.+++...-+- .+-.......-|-.|.+.+++..+.++-..-...--.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 367777788888876654322 2223445555667777888887777777665554222233446666655543
Q ss_pred --cCchhhHHHHH
Q 037592 197 --MGLIDRGRKHF 207 (337)
Q Consensus 197 --~~~~~~a~~~~ 207 (337)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 57777777766
No 395
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=76.09 E-value=14 Score=32.05 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=16.7
Q ss_pred cchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 286 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
..+|..++.+|.-.+++.+|.++|..+.
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666665543
No 396
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.83 E-value=73 Score=30.14 Aligned_cols=145 Identities=9% Similarity=0.052 Sum_probs=96.1
Q ss_pred HHHHHhcCChHHHHHHHHHcccC-----ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhh
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKK-----NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLG 102 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 102 (337)
++-+.+.+.+++|+++-+..... -...+...|..+...|++++|-...-.|...+..-|...+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 56678889999999998877332 2345778888899999999999999998877777777777777766665544
Q ss_pred HHHHHHHHHhhCC-CCchhHHHHHHHHHhcCCHHHHHHHHhcCC--------------------CCcHHhHHHHHHHHHh
Q 037592 103 KEVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMP--------------------VRNLITWNSMISGFAQ 161 (337)
Q Consensus 103 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------~~~~~~~~~l~~~~~~ 161 (337)
..++ -.|++ .+..+|..++..+.. .+...-.+...+-. ..+...-..|+..|..
T Consensus 443 a~~l----Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 443 APYL----PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLY 517 (846)
T ss_pred hccC----CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHH
Confidence 3331 11221 346677776666665 33333333222221 1122334458889999
Q ss_pred CCCHhHHHHHHHHHHh
Q 037592 162 NGRGEEALRIFDDMTE 177 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~ 177 (337)
.+++.+|..++-..++
T Consensus 518 d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 518 DNKYEKALPIYLKLQD 533 (846)
T ss_pred ccChHHHHHHHHhccC
Confidence 9999999998876643
No 397
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.55 E-value=44 Score=27.43 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=103.0
Q ss_pred HHHHHHhcCChHHHHHHHHHcccC----C-------hhhHHHHHHHHHcCCChhHHHHHHHHHhh-------c-CcccHH
Q 037592 27 LVDMYGKCGLVDESHRVFDKMLKK----N-------SVSSSALLQGYCQTGDFESVIRIFREMEE-------I-DLFSFG 87 (337)
Q Consensus 27 l~~~~~~~~~~~~A~~~~~~~~~~----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~~~~ 87 (337)
+.+-..+.+++++|+..+.++... + ..+...+...|.+.|+...--+......+ | ......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 455567788899999998888443 2 23455677888888888776666655544 1 122334
Q ss_pred HHHHHHHh-hchhhhhHHHHHHHHHhhCCCC-----chhHHHHHHHHHhcCCHHHHHHHHhcCC--------CCcHHhHH
Q 037592 88 IVLRACAG-LAALRLGKEVHCQYIRRSGCKD-----VIIESALVDLYAKCGCVDFAHQIFLQMP--------VRNLITWN 153 (337)
Q Consensus 88 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~ 153 (337)
+++.-+.. ...++..+.+....++...... ...-..++..+.+.|++.+|+.+...+. +++..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 44444432 2345555555555444332111 1222457888899999999988765443 33333322
Q ss_pred HH-HHHHHhCCCHhHHHHHHHHHHhc----CCCCCHhHHHHHHHH--HhhcCchhhHHHHHHHHHH
Q 037592 154 SM-ISGFAQNGRGEEALRIFDDMTEG----GTKPDHVSFIGVLSA--CSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 154 ~l-~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~ 212 (337)
.+ -..|...++..++..-+...... -++|-...-.-++.+ .|.-.++..|..+|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 22 23455555555555554443321 134433333333332 3455677788888877755
No 398
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.02 E-value=24 Score=25.23 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHhc--CCCch--hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc
Q 037592 217 KPKIEHYNCMVDLLGRAGL---LEEAETLIENAD--CRHDS--SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 287 (337)
.++..+-..+.-++.+..+ ..+.+.+++.+- ..|+. .....|.-++.+.++++.+.++.+..++..|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4555555566666665543 445556666542 22221 22333445677888888888888888888887643
No 399
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.90 E-value=30 Score=28.20 Aligned_cols=83 Identities=16% Similarity=0.042 Sum_probs=48.0
Q ss_pred HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC----CCcHHhHHHHHHHHHh----
Q 037592 90 LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP----VRNLITWNSMISGFAQ---- 161 (337)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~---- 161 (337)
|.++...+++.++....-+.-+.--+....+...-|-.|.+.|+...+.++-..-. ..+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 55666777777766654333322111234445555666777787777666654443 2234456666655543
Q ss_pred -CCCHhHHHHHH
Q 037592 162 -NGRGEEALRIF 172 (337)
Q Consensus 162 -~~~~~~a~~~~ 172 (337)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 68888887776
No 400
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=74.88 E-value=35 Score=26.07 Aligned_cols=178 Identities=11% Similarity=0.077 Sum_probs=93.8
Q ss_pred cCCCCchHhHHHHHHHHHhc----CChHHHHHHHHHcc----cC----ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcC
Q 037592 15 LGLCGNVVVESSLVDMYGKC----GLVDESHRVFDKML----KK----NSVSSSALLQGYCQTGDFESVIRIFREMEEID 82 (337)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 82 (337)
.|.-++...++-++..+.+. +.++.+..+=.+.. .+ +......-+..|-..|++.+--.+|-...
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~--- 78 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK--- 78 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH---
Confidence 35566677677666665543 33333333333331 11 22222333445556666665555544332
Q ss_pred cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-CCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 037592 83 LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQ 161 (337)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 161 (337)
.+|.+.++++.--......+....+ ....-|....++-++.-..+++-+.+- ..+=-+++..|.+
T Consensus 79 --------~gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L------GRiGiS~m~~Yhk 144 (233)
T PF14669_consen 79 --------MGCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL------GRIGISLMYSYHK 144 (233)
T ss_pred --------hhcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh------hHHHHHHHHHHHH
Confidence 2333334443322222222222111 112334445555554444444333221 2233456677888
Q ss_pred CCCHhHHHHHHHHHHhcCC--------------CCCHhHHHHHHHHHhhcCchhhHHHHHHH
Q 037592 162 NGRGEEALRIFDDMTEGGT--------------KPDHVSFIGVLSACSHMGLIDRGRKHFAS 209 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~--------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (337)
.-+|.+..++++.|.+..+ .+--...+.....+.+.|.+|.|..++++
T Consensus 145 ~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 145 TLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 8899999999988876422 23345567777889999999999999885
No 401
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=74.70 E-value=23 Score=30.75 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---------C--cHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMPV---------R--NLITWNSMISGFAQNGRGEEALRIFDDMT 176 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 176 (337)
...|++.++-.|++..|+++++.+.- | .+.++--+.-+|...+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888889999999999887761 1 34567778888999999999999998764
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=74.50 E-value=24 Score=24.05 Aligned_cols=27 Identities=11% Similarity=0.434 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777777777777777777777665
No 403
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=74.49 E-value=28 Score=26.33 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=19.5
Q ss_pred HHHHHhcCChHHHHHHHHHhcCCCchhHHHH
Q 037592 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEV 257 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 257 (337)
+..|.+.|.+++|.+++++.-..|+......
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~ 148 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRM 148 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHH
Confidence 4467777777777777777544555544433
No 404
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=74.18 E-value=27 Score=24.36 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHH-------hcCCCccchHHHHH----HHHHHcCChhhHHHHHHH
Q 037592 255 WEVLLGACTTFRNAHVAERVAKKIM-------ELKPDCHLSYVLLD----NVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 255 ~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~----~~~~~~g~~~~A~~~~~~ 311 (337)
+..|..++...|++++++.-.+.++ +++.+....|...+ .++...|+.++|+..|+.
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3444455566666655544433333 35555444554333 356667777777776654
No 405
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.12 E-value=65 Score=28.76 Aligned_cols=239 Identities=8% Similarity=-0.056 Sum_probs=129.2
Q ss_pred hHHHHHHHHHhh--cCcccHHHHHHHHHhhc------hhhhhHHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCCHHH-H
Q 037592 69 ESVIRIFREMEE--IDLFSFGIVLRACAGLA------ALRLGKEVHCQYIRRSG-C-KDVIIESALVDLYAKCGCVDF-A 137 (337)
Q Consensus 69 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~-A 137 (337)
+....+|++..+ |+...|...|..|...- .......+++.....+. . .....|..+.-++.....-.+ |
T Consensus 299 s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 299 SRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 344466666666 55666666666664432 23334445555544332 1 234555666666666554433 4
Q ss_pred HHHHhcCCCCcHHhHHHHHHHHHhCC-CHhH-HHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc-hhh-HHHHHHHHHHh
Q 037592 138 HQIFLQMPVRNLITWNSMISGFAQNG-RGEE-ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL-IDR-GRKHFASMTKE 213 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~-a~~~~~~~~~~ 213 (337)
..+..+....+...|..-++....+. +++- -..+|......-..+-...++... .++ .+. -..++-.+...
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 44443555566666666555544321 2111 112222333221222233333333 122 111 11111122122
Q ss_pred cCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHH--HhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 214 YRIKPKIEH-YNCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGA--CTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 214 ~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
-..|+..+ -+.++..+.+.|-.++|...+..+. .+|+...+..+|+. -...-+..-+..+|+.+..-.-.++..
T Consensus 454 -~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 454 -VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred -hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 22344433 4677888889999999999999864 34456667777744 222334788888999888733255788
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 289 YVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
|......-...|..+.+-.++.+..
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 8888877788899998888776544
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=73.14 E-value=30 Score=24.41 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHHHHHHHh--cCCCccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 270 VAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 270 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
.+.++|..|.. +.-..+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777765 5556566777777777788888888877764
No 407
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.13 E-value=82 Score=29.46 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=34.3
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---c
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR---A 233 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 233 (337)
..+.-.|+++.|++.+-+ ..+...+.+.+...+..|.-.+-.+... ..++....-.|.+.-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 344556788888877765 1122334444444443332221111111 2221111111222556777777775 4
Q ss_pred CChHHHHHHHHHhc
Q 037592 234 GLLEEAETLIENAD 247 (337)
Q Consensus 234 g~~~~A~~~~~~~~ 247 (337)
.+..+|.++|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 56777877776553
No 408
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=73.08 E-value=27 Score=26.47 Aligned_cols=20 Identities=10% Similarity=0.338 Sum_probs=9.6
Q ss_pred HHHcCCChhHHHHHHHHHhh
Q 037592 61 GYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 61 ~~~~~g~~~~A~~~~~~~~~ 80 (337)
.|.+.|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34444555555554444443
No 409
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.04 E-value=22 Score=32.59 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=67.8
Q ss_pred HHHhcCChHHHHHHHHH-hcCCC-c------hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 229 LLGRAGLLEEAETLIEN-ADCRH-D------SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~-~~~~~-~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
...+..++..+.+.|.. +..-| | ......+--+|....+.|.|.+++.++.+.+|.++.+-..+..+....|
T Consensus 363 ~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 363 KLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 34567788888888875 32111 1 2234555667889999999999999999999998888888888888999
Q ss_pred ChhhHHHHHHHHHHhC
Q 037592 301 RWNDAFKIRTLMKYSG 316 (337)
Q Consensus 301 ~~~~A~~~~~~m~~~~ 316 (337)
..++|+.+.......-
T Consensus 443 ~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 443 KSEEALTCLQKIKSSE 458 (872)
T ss_pred chHHHHHHHHHHHhhh
Confidence 9999999988776543
No 410
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=73.01 E-value=9.5 Score=22.89 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHH
Q 037592 68 FESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111 (337)
Q Consensus 68 ~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (337)
.+...++++.+.. -|...--.++.++.+.|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444443 3333344556666777777777776666554
No 411
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.81 E-value=69 Score=28.51 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=92.5
Q ss_pred HhCCCHhHHHHHHHHHHhc-CCCCC--H-----hHHHHHH-HHHhhcCchhhHHHHHHHHHHhcCCCCCHHH--HHHHHH
Q 037592 160 AQNGRGEEALRIFDDMTEG-GTKPD--H-----VSFIGVL-SACSHMGLIDRGRKHFASMTKEYRIKPKIEH--YNCMVD 228 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~-~~~p~--~-----~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~ 228 (337)
.-.|++.+|++-...|++- ...|. . .....++ ..|+..|.++.|...|..+.+. --..|... -..+..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAI 412 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHH
Confidence 4579999999999998764 12233 1 1222333 3445678999999999888654 22233322 245667
Q ss_pred HHHhcCChHHHHHHHHHhcCCCchhHHHH--------HHHH--HhcCCChhHHHHHHHHHHhcC-CC-----ccchHHHH
Q 037592 229 LLGRAGLLEEAETLIENADCRHDSSLWEV--------LLGA--CTTFRNAHVAERVAKKIMELK-PD-----CHLSYVLL 292 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------l~~~--~~~~g~~~~a~~~~~~~~~~~-p~-----~~~~~~~l 292 (337)
.|.+.|+.+.-.++++.++.. +..++.. ++.+ ....+++.+|..++++.++.. .. ..-....|
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p~-nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLL 491 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGPL-NTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLL 491 (629)
T ss_pred HHHHhccHHHHHHHHHhcCCC-CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 889999988888888887533 1211111 1122 347789999999999988743 11 11123344
Q ss_pred HHHHHHcCChhhHHHHHHH
Q 037592 293 DNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 293 ~~~~~~~g~~~~A~~~~~~ 311 (337)
...+...|+..++.+...-
T Consensus 492 s~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 492 SHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHHHhcchHHHHhccch
Confidence 4556677887777765543
No 412
>PF13934 ELYS: Nuclear pore complex assembly
Probab=72.52 E-value=46 Score=26.34 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=10.7
Q ss_pred HHHHHhhcCchhhHHHHHHHH
Q 037592 190 VLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~ 210 (337)
++.++...|+.+.|..+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444455555555555544
No 413
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.89 E-value=52 Score=26.71 Aligned_cols=82 Identities=17% Similarity=0.062 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc-hHHHHHHHH
Q 037592 218 PKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL-SYVLLDNVY 296 (337)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~ 296 (337)
-++.....+...|.+.|++.+|+..|-.-. .|+...+..++.-+.. +..|.... .....+--|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~---------------~~~~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWST---------------KGYPSEADLFIARAVLQY 151 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHH---------------HTSS--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHH---------------hcCCcchhHHHHHHHHHH
Confidence 356777888889999999988887764332 2222222122222222 22233222 233445566
Q ss_pred HHcCChhhHHHHHHHHHHh
Q 037592 297 RAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~ 315 (337)
...++...|...++...+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 6778888888888777765
No 414
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.76 E-value=17 Score=21.02 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=14.9
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh
Q 037592 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 185 (337)
+.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 34455566666666666666655 344443
No 415
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=71.50 E-value=82 Score=31.72 Aligned_cols=153 Identities=11% Similarity=-0.017 Sum_probs=95.0
Q ss_pred HHhcCCHHHHHH------HHh----cCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh-----cCCC--CCHhHHHHH
Q 037592 128 YAKCGCVDFAHQ------IFL----QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE-----GGTK--PDHVSFIGV 190 (337)
Q Consensus 128 ~~~~g~~~~A~~------~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~--p~~~~~~~l 190 (337)
....|.+.++.+ ++. .+.+.....|..+...+.+.|+.++|+..=.+..- .|.. -+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 444566666665 333 22244556788888999999999999876554321 1222 233455555
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHh--------cC--CCchhH
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYR------IKPKIEHYNCMVDLLGRAGLLEEAETLIENA--------DC--RHDSSL 254 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~--~~~~~~ 254 (337)
...+...+....|...+.+.....+ -+|...+++.+-..+...++++.|.++.+.. +. -++..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 5555556677788887777644322 1334455555555566668888888888753 21 235566
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 255 WEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 255 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
+..+...+...+++..|....+....
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 77777778888888887766655543
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.21 E-value=27 Score=23.02 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=28.2
Q ss_pred HhcCChHHHHHHHHHccc----C-C-----h--hhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 32 GKCGLVDESHRVFDKMLK----K-N-----S--VSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~----~-~-----~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
.+.|++.+|.+.+.+..+ . + . ...-.+.......|++++|+..+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 467888888666665511 1 1 1 1112234455666777777777777654
No 417
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=70.75 E-value=26 Score=25.27 Aligned_cols=64 Identities=17% Similarity=0.074 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCCh
Q 037592 236 LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302 (337)
Q Consensus 236 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 302 (337)
-+.|.++.+-||-. ...-.........|++.-|.++.+.+...+|++...-.....+|.+.|.-
T Consensus 57 ~~~A~~~v~l~GG~---d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAGGA---DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTTCH---HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 35566666666532 22333445567889999999999999999999888888888887776543
No 418
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=69.68 E-value=73 Score=28.04 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhch----
Q 037592 26 SLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAA---- 98 (337)
Q Consensus 26 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 98 (337)
.|+.-|.-.|++.+|....+++--| ....+-+++.+.-+.|+-...+.+++..-.....|-+.+-.+|.+..+
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl~D 593 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSLPD 593 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccCcc
Q ss_pred ----hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 037592 99 ----LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133 (337)
Q Consensus 99 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (337)
+..|.+.|+...+.+. .+-.++..|-..+-..++
T Consensus 594 lsLDvPna~ekf~~~Ve~~~-~~G~i~~~l~~~~~s~l~ 631 (645)
T KOG0403|consen 594 LSLDVPNAYEKFERYVEECF-QNGIISKQLRDLCPSRLR 631 (645)
T ss_pred cccCCCcHHHHHHHHHHHHH-HcCchhHHhhhcchhhhc
No 419
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.44 E-value=56 Score=26.03 Aligned_cols=89 Identities=8% Similarity=0.026 Sum_probs=41.1
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhH
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 167 (337)
..+..|...|++..|-.....+-+.- +.+..-+..-|..|-..++|-+-.+.-. .-...+.-....-...+++.+
T Consensus 98 ~aieIyt~~Grf~~aAk~~~~iaEiy-Esdl~d~ekaI~~YE~Aae~yk~ees~s----sANKC~lKvA~yaa~leqY~~ 172 (288)
T KOG1586|consen 98 KAIEIYTDMGRFTMAAKHHIEIAEIY-ESDLQDFEKAIAHYEQAAEYYKGEESVS----SANKCLLKVAQYAAQLEQYSK 172 (288)
T ss_pred HHHHHHHhhhHHHHHHhhhhhHHHHH-hhhHHHHHHHHHHHHHHHHHHcchhhhh----hHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777766665554443331 2333344444444444443322222111 111122222233344566777
Q ss_pred HHHHHHHHHhcCCC
Q 037592 168 ALRIFDDMTEGGTK 181 (337)
Q Consensus 168 a~~~~~~m~~~~~~ 181 (337)
|+++|++.....+.
T Consensus 173 Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 173 AIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHhcc
Confidence 77777776655443
No 420
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=69.04 E-value=25 Score=23.97 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHH
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIR 111 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (337)
|..++..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444444444444444444443
No 421
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.70 E-value=24 Score=28.34 Aligned_cols=55 Identities=9% Similarity=-0.113 Sum_probs=36.1
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhC-----CCCchhHHHHHHHHHhcCCHHHHHHHHh
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSG-----CKDVIIESALVDLYAKCGCVDFAHQIFL 142 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 142 (337)
.+...|...|++++|.++++.+...-- .+...+...+..++.+.|+.+..+.+.-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455667777788888777777743311 1335566667788888888887766543
No 422
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.50 E-value=1.3e+02 Score=30.09 Aligned_cols=148 Identities=11% Similarity=0.044 Sum_probs=86.5
Q ss_pred HHHHcCCChhHHHHHHHHHhh----------------c---C-------------cccHHHHHHHHHhhchhhhhHHHHH
Q 037592 60 QGYCQTGDFESVIRIFREMEE----------------I---D-------------LFSFGIVLRACAGLAALRLGKEVHC 107 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~----------------~---~-------------~~~~~~l~~~~~~~~~~~~a~~~~~ 107 (337)
.+|...|+..+|+++|.+... | + ..-|..+++.+-+.+..+.+.++-.
T Consensus 928 ~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~ 1007 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAV 1007 (1480)
T ss_pred eeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 346678888899998888754 1 1 0125567777777888888888777
Q ss_pred HHHHhhCC--CC-chhHHHHHHHHHhcCCHHHHHHHHhcCCC--CcHHhHHHHHHHHHhCCCHh------------HHHH
Q 037592 108 QYIRRSGC--KD-VIIESALVDLYAKCGCVDFAHQIFLQMPV--RNLITWNSMISGFAQNGRGE------------EALR 170 (337)
Q Consensus 108 ~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~------------~a~~ 170 (337)
.+++.-.. |+ ..+++.+.+.....|.+-+|...+-+-.. .-......++..++..|.++ +...
T Consensus 1008 ~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~ 1087 (1480)
T KOG4521|consen 1008 KAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVED 1087 (1480)
T ss_pred HHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHH
Confidence 66665322 11 35566777888888888888877655442 11224455555666666543 3333
Q ss_pred -HHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHH
Q 037592 171 -IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207 (337)
Q Consensus 171 -~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 207 (337)
+++..-+....-....|..|-..+...+++.+|-.+.
T Consensus 1088 ~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1088 FLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 3333322222223334555555556677776655443
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.22 E-value=80 Score=27.39 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccC------ChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKK------NSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
..+.-+...|..+|+++.|++.|.+..+- ....|-.+|..-+-.|+|.....+..+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34666777788888888888888775221 233466666666677777777777777665
No 424
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.17 E-value=61 Score=26.01 Aligned_cols=59 Identities=10% Similarity=-0.114 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 120 IESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
.+-....++...|++-++++.-.++. +.++-+|.--..+.+..-+.++|..=|...++.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 44556677777888888888777766 335667777777777777888888888887774
No 425
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=67.99 E-value=73 Score=26.80 Aligned_cols=53 Identities=9% Similarity=0.233 Sum_probs=29.1
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
+..+.|+..+|.+.++.+.++..+..-......|+.++....-+.....++-+
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33466777777777777755432211123334566666666555555555443
No 426
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=67.79 E-value=30 Score=22.42 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc
Q 037592 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 47 (337)
++|+.....|+..|..+|..+++.+.-+=-.+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 67777777888888888888887776666677777777777
No 427
>PRK10941 hypothetical protein; Provisional
Probab=67.53 E-value=67 Score=26.25 Aligned_cols=71 Identities=10% Similarity=0.094 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHH
Q 037592 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPD-HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
+.+-.+|.+.++++.|+.+.+.+... .|+ ..-+.--.-.|.+.|.+..|..=++..++...-.|+......
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 34445555556666666666555552 222 222222333455555555555555555444333333333333
No 428
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=67.27 E-value=82 Score=27.11 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=46.8
Q ss_pred cHHhHHHH---HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHh-hcCchhhHHHHHHHHH
Q 037592 148 NLITWNSM---ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS-HMGLIDRGRKHFASMT 211 (337)
Q Consensus 148 ~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 211 (337)
|...|.++ |..+.+.|-+.-|+++.+-+...+..-|.......|+.|+ +.++++--+++.+...
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 44444444 5677889999999999999888655546666666777766 7788887888777763
No 429
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=66.77 E-value=14 Score=30.38 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI 188 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 188 (337)
.-|+..|....+.||+++|+.++++..+.|+.--..+|.
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 346678888888888888888888888888765444443
No 430
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.58 E-value=21 Score=25.05 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=24.8
Q ss_pred ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 48 LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
.-|++..-..-+.++-+-+++..|+++|+-++.
T Consensus 80 lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 80 LVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445666677777888888888888888887765
No 431
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.42 E-value=8.2 Score=27.35 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=24.7
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 193 (337)
...|.-..|..+|++|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4456777899999999999999875 5666654
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.05 E-value=29 Score=27.90 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=45.9
Q ss_pred HHHHHHHHcccCCh--hhHHHHHHHHHcCCChhHHHHHHHHHhh---------cCcccHHHHHHHHHhhchhhhhHHHHH
Q 037592 39 ESHRVFDKMLKKNS--VSSSALLQGYCQTGDFESVIRIFREMEE---------IDLFSFGIVLRACAGLAALRLGKEVHC 107 (337)
Q Consensus 39 ~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 107 (337)
.|...|........ ..--.+..-|.+.|++++|+++|+.+.. +...+...+..++...|+.+....+--
T Consensus 163 ~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 163 KAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45555555433322 2234566778888899999999888864 233345566677778888887777655
Q ss_pred HHH
Q 037592 108 QYI 110 (337)
Q Consensus 108 ~~~ 110 (337)
++.
T Consensus 243 eLl 245 (247)
T PF11817_consen 243 ELL 245 (247)
T ss_pred HHh
Confidence 543
No 433
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.92 E-value=35 Score=22.42 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=28.5
Q ss_pred HhCCCHhHHHHHHHHHHh----cCCCCC----HhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 160 AQNGRGEEALRIFDDMTE----GGTKPD----HVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~----~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
.+.|++.+|.+.+.+... .+..+. ......+...+...|++++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456777777655554433 222211 112222334455667777777777776543
No 434
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.40 E-value=15 Score=32.20 Aligned_cols=99 Identities=8% Similarity=-0.089 Sum_probs=64.9
Q ss_pred HHHHHcCCChhHHHHHHHHHhh--cCcccH-HHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 037592 59 LQGYCQTGDFESVIRIFREMEE--IDLFSF-GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135 (337)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 135 (337)
+..+...+.++.|+.++.++.+ |+...| ..-..++.+.+++..|..-...+++..+ .....|..-..++.+.+++.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP-~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDP-TYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCc-hhhheeeeccHHHHhHHHHH
Confidence 4456677888888888888888 655544 3344777888888888888888877653 23344444445566666777
Q ss_pred HHHHHHhcCC--CCcHHhHHHHHHH
Q 037592 136 FAHQIFLQMP--VRNLITWNSMISG 158 (337)
Q Consensus 136 ~A~~~~~~~~--~~~~~~~~~l~~~ 158 (337)
+|...|+... .|+..-...++.-
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 7777777665 4555444444443
No 435
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.53 E-value=67 Score=25.18 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
....++....+.|+.++|.+.|.++...+-.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4445566666777777777777776655443
No 436
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.06 E-value=12 Score=30.80 Aligned_cols=39 Identities=13% Similarity=0.036 Sum_probs=26.0
Q ss_pred cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCcc
Q 037592 281 LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 281 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 319 (337)
..|+....|+..|..-.+.|++++|+.++++..+.|+..
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 345544556677777777777777777777777777654
No 437
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=63.46 E-value=92 Score=26.38 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHH-HHHHHHhcCCCCCHhHHHHHHHHHhhcCchh
Q 037592 123 ALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR-IFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 201 (337)
.+.+.++|.++-+.+..+-+.+..-......++..++-...=.+...+ +++++... ||......++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 345566666666555555444443333344444444433332222222 33333322 66666666666666655554
Q ss_pred hHHHHHHHHHH
Q 037592 202 RGRKHFASMTK 212 (337)
Q Consensus 202 ~a~~~~~~~~~ 212 (337)
.....+..++.
T Consensus 248 ~~~~~i~~~L~ 258 (340)
T PF12069_consen 248 LVAILIDALLQ 258 (340)
T ss_pred HHHHHHHHHhc
Confidence 44444555543
No 438
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.39 E-value=55 Score=23.77 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhh---------cCcccHHHHHHHHHhhch-hhhhHHHHHHHHHhhCCCCchhHHHH
Q 037592 55 SSALLQGYCQTGDFESVIRIFREMEE---------IDLFSFGIVLRACAGLAA-LRLGKEVHCQYIRRSGCKDVIIESAL 124 (337)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 124 (337)
.|+++.-....+++...+.+++.+.. .+...|..++.+.++... ---+..+|..+.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45666666666777777777776643 445567778877766655 33456667777766677777778878
Q ss_pred HHHHHhc
Q 037592 125 VDLYAKC 131 (337)
Q Consensus 125 ~~~~~~~ 131 (337)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776654
No 439
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=62.89 E-value=90 Score=26.07 Aligned_cols=81 Identities=15% Similarity=0.036 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 200 IDRGRKHFASMTKEYRI---KPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
.+.|.+.|+........ ..++.....+.....+.|..+.-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 34455555555332111 233444444455555555544444444444444444445555555555555555555555
Q ss_pred HHHh
Q 037592 277 KIME 280 (337)
Q Consensus 277 ~~~~ 280 (337)
.+..
T Consensus 226 ~~l~ 229 (324)
T PF11838_consen 226 LLLS 229 (324)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 5554
No 440
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=62.79 E-value=29 Score=28.79 Aligned_cols=80 Identities=6% Similarity=0.051 Sum_probs=54.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHH-HHHHhcCCChhHHHHHHHHHHhcCCCccchHHH
Q 037592 215 RIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVL-LGACTTFRNAHVAERVAKKIMELKPDCHLSYVL 291 (337)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 291 (337)
.+..|+..|...+.--.+.|.+.+...++.+. ...| |+..|-.. -.-+...++++.+..+|.+.++.+|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34556777776666666677777777777763 3334 44455432 233667889999999999999999998887775
Q ss_pred HHH
Q 037592 292 LDN 294 (337)
Q Consensus 292 l~~ 294 (337)
...
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 544
No 441
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=62.08 E-value=17 Score=29.98 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=33.7
Q ss_pred HHhcCChHHHHHHHHH-hcCCCch-hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 230 LGRAGLLEEAETLIEN-ADCRHDS-SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 230 ~~~~g~~~~A~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
..+.|+.++|..+|+. +...|+. .....+....-..++.-+|-.+|-+++.+.|.+..+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3456777777777774 3333332 223333333344456667777777777777776544
No 442
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=61.40 E-value=1.1e+02 Score=26.79 Aligned_cols=192 Identities=8% Similarity=-0.062 Sum_probs=94.8
Q ss_pred HHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCch
Q 037592 40 SHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119 (337)
Q Consensus 40 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 119 (337)
...+.+.+..++.......+.++...+...-.-.+..-+..++.......+.++...+. .+...+..+++ .++..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~ 162 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDAL 162 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHH
Confidence 34444444555555666666776666655544433333333555444455555544331 23333333433 25555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
+-..-+.++...+..+..-.+..-...+|...-..-+.+....|. .+|...+...... ++......+....... .
T Consensus 163 Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~-~ 237 (410)
T TIGR02270 163 VRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVA-G 237 (410)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhC-C
Confidence 555556666665554333333333335566666666666677776 5666655553322 2222222222222222 3
Q ss_pred hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc
Q 037592 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 247 (337)
.+++...+..+.++ +. +-...+.++.+.|+..-+.-+.+.+.
T Consensus 238 ~~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 238 GPDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred chhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 33566656555432 22 44556666667777666555555554
No 443
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.81 E-value=1.1e+02 Score=26.54 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 55 SSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
+.-+..-|...|+++.|++.|.+.+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~Rd 178 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARD 178 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhh
Confidence 34445555555666666655555443
No 444
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.61 E-value=63 Score=23.50 Aligned_cols=76 Identities=7% Similarity=0.105 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---------CCcHHhHHHHHHHHHhCCC-HhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMP---------VRNLITWNSMISGFAQNGR-GEEALRIFDDMTEGGTKPDHVSFIGVL 191 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~ 191 (337)
+.++.-....+.+.....+++.+. ..+...|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445555555566666666665553 1234456666666654443 334455666666656666666666666
Q ss_pred HHHhhc
Q 037592 192 SACSHM 197 (337)
Q Consensus 192 ~~~~~~ 197 (337)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 665544
No 445
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=60.53 E-value=60 Score=24.32 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=25.7
Q ss_pred hcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 037592 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236 (337)
Q Consensus 177 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (337)
+.|++++..-. .++..+...+..-.|.++++.+ +..+...+..|...-+..+...|-+
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L-~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLL-REAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHH-HhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34444443332 2233333334444555566555 3324444444444445555555443
No 446
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=60.05 E-value=58 Score=22.94 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHH-HHHHHHhcCCChhHHHHHHHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE-VLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
...+..++..++.-.|..++|.++++..+.-++-...| .++..|.+..+.++..++-++.
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34566677777777888888888888776655555554 3567777777766666654443
No 447
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.02 E-value=64 Score=23.42 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 171 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
+...+.+.|.+++..-. .++..+...++.-.|..+++.+.+ .+...+..|...-+..+...|-
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~-~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELRE-EGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHH-hCCCCCHhHHHHHHHHHHHCCC
Confidence 33444555555544332 244455555555666666666633 2444445555555566665553
No 448
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=59.79 E-value=32 Score=24.23 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=28.8
Q ss_pred HHHHHHHHHcccCC-----hhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 38 DESHRVFDKMLKKN-----SVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 38 ~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++..++|..|.... +.-|......+-..|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34677788875553 33466677778889999999998863
No 449
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=58.51 E-value=1.2e+02 Score=26.19 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHH------------HHHHHhcCCChhHHHHHHHHHHh---cCCCc---
Q 037592 224 NCMVDLLGRAGLLEEAETLIENADCRHDSSLWEV------------LLGACTTFRNAHVAERVAKKIME---LKPDC--- 285 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~a~~~~~~~~~---~~p~~--- 285 (337)
..|...+-..|++++|..++.+..+ .||.+ -+..|...+++-.|.-+-+++.. -.|+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 4466677788999999988877632 22222 13557778888888877777765 22331
Q ss_pred -cchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 286 -HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 286 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
...|..++......+.+=.+.+.|+.+-+.|........|+..
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~v 254 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEV 254 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhh
Confidence 2367777888778888888889998888777665555555443
No 450
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.14 E-value=1.2e+02 Score=25.78 Aligned_cols=117 Identities=9% Similarity=0.018 Sum_probs=73.7
Q ss_pred HhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh------cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSH------MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 165 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
++++..++++....+. |........|.++-. .-+|.....+|+.+. ...|++.+-..=.-+..+..-.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhHHh
Confidence 5677778888777755 677777666655432 235667777777774 335554333222334455555677
Q ss_pred HHHHHHHhcCCCchhH---H-HHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 239 AETLIENADCRHDSSL---W-EVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 239 A~~~~~~~~~~~~~~~---~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
++.+.+.++..|-..- | ..-...+.+.|..++|...|++++.+.++.
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 7777777655432222 2 222355889999999999999999877773
No 451
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=57.18 E-value=1.8e+02 Score=29.57 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=32.4
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcc---cC--------ChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKML---KK--------NSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
....|..|...+-+.|+.++|+..-.... ++ +...|..+.......++...|+..+.+...
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 34556666666666777777666554431 11 222344444444445556666666555544
No 452
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=56.84 E-value=27 Score=18.19 Aligned_cols=13 Identities=8% Similarity=-0.240 Sum_probs=5.3
Q ss_pred HhcCCChhHHHHH
Q 037592 262 CTTFRNAHVAERV 274 (337)
Q Consensus 262 ~~~~g~~~~a~~~ 274 (337)
+...|++++|+.+
T Consensus 11 ~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 11 FYQKGKYDEAIHF 23 (36)
T ss_dssp HHHTT-HHHHHHH
T ss_pred HHHHhhHHHHHHH
Confidence 3344444444444
No 453
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.64 E-value=1.2e+02 Score=25.54 Aligned_cols=25 Identities=4% Similarity=0.082 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
.+......||+.|+-+.|.+.++..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444555666666666666666554
No 454
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=56.42 E-value=1.2e+02 Score=25.35 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=24.8
Q ss_pred CCchHhHHHHH-HHHHhcCC-hHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHH
Q 037592 18 CGNVVVESSLV-DMYGKCGL-VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESV 71 (337)
Q Consensus 18 ~~~~~~~~~l~-~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 71 (337)
.|...++++|. +.+.+.|= ..-|.++|+.... ....+.++.++.+-+.-++-
T Consensus 162 t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~--Ek~i~~lis~Lrkg~md~rL 215 (412)
T KOG2297|consen 162 TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLV--EKDINDLISSLRKGKMDDRL 215 (412)
T ss_pred CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHh--hccHHHHHHHHHhcChHhHH
Confidence 34444444444 44555553 3346667766522 12235566665554444433
No 455
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=55.95 E-value=27 Score=17.77 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=14.8
Q ss_pred ChhHHHHHHHHHHhcCCCccchHHHH
Q 037592 267 NAHVAERVAKKIMELKPDCHLSYVLL 292 (337)
Q Consensus 267 ~~~~a~~~~~~~~~~~p~~~~~~~~l 292 (337)
.++.|..+|++.....|+ +..|...
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 356666666666666666 5555443
No 456
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=55.75 E-value=1.2e+02 Score=28.48 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcccCC------hhhHHHHHHHHHcCCChh------HHHHHHHHHhh-cCcccHHHHHH
Q 037592 25 SSLVDMYGKCGLVDESHRVFDKMLKKN------SVSSSALLQGYCQTGDFE------SVIRIFREMEE-IDLFSFGIVLR 91 (337)
Q Consensus 25 ~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~-~~~~~~~~l~~ 91 (337)
.+|..+|..+|++-.+.++++.....+ ...+|..|....+.|.++ .|.+++++..- -|..||..++.
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 379999999999999999999985442 456899999999999775 23333333322 56667777766
Q ss_pred HHHhhchhhhhHHHHHHHHH
Q 037592 92 ACAGLAALRLGKEVHCQYIR 111 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~ 111 (337)
+...--+-....-++.+++.
T Consensus 112 ~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hhcChHhHHhccHHHHHHHH
Confidence 55443333333334444443
No 457
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=55.49 E-value=1.2e+02 Score=24.98 Aligned_cols=49 Identities=10% Similarity=-0.050 Sum_probs=21.2
Q ss_pred CHHHHHHHHhcCCCC-cHHhHHHHHHHHHh----CCCHhHHHHHHHHHHhcCCC
Q 037592 133 CVDFAHQIFLQMPVR-NLITWNSMISGFAQ----NGRGEEALRIFDDMTEGGTK 181 (337)
Q Consensus 133 ~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~ 181 (337)
+..+|..+|...-.. .......|...|.. ..+..+|..+|++..+.|..
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh
Confidence 344455555533322 22333334433333 22455555555555554443
No 458
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.19 E-value=1.1e+02 Score=25.58 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc
Q 037592 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML 48 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 48 (337)
++++.+.+.++.|.-..+.-+.-.+.+.=.+...+.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555566665555555555555555666666666553
No 459
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=54.82 E-value=1.4e+02 Score=27.90 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHhc--CCCCCHhHHHHHHHHHhhcCchhh--HHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037592 154 SMISGFAQNGRGEEALRIFDDMTEG--GTKPDHVSFIGVLSACSHMGLIDR--GRKHFASMTKEYRIKPKIEHYNCMVDL 229 (337)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (337)
+|..+|..+|++-.+.++++..... |-+.-...++..++...+.|.++- ...-..+.++...+.-|..||..|+++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 5666777777777777776666543 112223355555666666665431 111122222222344555566555544
Q ss_pred H
Q 037592 230 L 230 (337)
Q Consensus 230 ~ 230 (337)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 460
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.80 E-value=80 Score=22.93 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC
Q 037592 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198 (337)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 198 (337)
.++..+...++.-.|.++++++.+.++..+..|....+..+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444555555555555444444444333334444333
No 461
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.68 E-value=2.2e+02 Score=27.65 Aligned_cols=69 Identities=14% Similarity=0.050 Sum_probs=43.2
Q ss_pred HHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhh
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALR 100 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 100 (337)
=..|...|+++.|.++-+.-++.-..++..-...|.+.+++..|-++|.++.+ .|..+.--+....+.+
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~----~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLS----SFEEVALKFLEINQER 433 (911)
T ss_pred HHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh----hHHHHHHHHHhcCCHH
Confidence 35677889999988876544111122344445667888889999888888744 3444444444455544
No 462
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.59 E-value=1.5e+02 Score=25.74 Aligned_cols=56 Identities=11% Similarity=-0.079 Sum_probs=39.2
Q ss_pred HHHHhhchhhhhHHHHHHHHHhhCCCCch--hHHHHHHHHH--hcCCHHHHHHHHhcCCCC
Q 037592 91 RACAGLAALRLGKEVHCQYIRRSGCKDVI--IESALVDLYA--KCGCVDFAHQIFLQMPVR 147 (337)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 147 (337)
..+...+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999999887 544443 4455555554 456788898888876643
No 463
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=53.28 E-value=1.6e+02 Score=25.96 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
++..-+..+.+.+++..|-.+.++++++.|+.
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 45666777899999999999999999998873
No 464
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=52.50 E-value=1.4e+02 Score=25.13 Aligned_cols=159 Identities=12% Similarity=0.111 Sum_probs=98.3
Q ss_pred CcHHhHHHHHHHHHhCC---C---------HhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhc
Q 037592 147 RNLITWNSMISGFAQNG---R---------GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY 214 (337)
Q Consensus 147 ~~~~~~~~l~~~~~~~~---~---------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (337)
.|+.+|-.++..--..- . .+.-+.+++++++.+. .+.......+..+.+..+.+...+-++.++..+
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 47888888886433221 1 3556778888888733 355566667788888888888888899987653
Q ss_pred CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHh----c---CC------Cc----hhHHHH---HHHHHhcCCChhHH
Q 037592 215 RIKPKIEHYNCMVDLLGR---AGLLEEAETLIENA----D---CR------HD----SSLWEV---LLGACTTFRNAHVA 271 (337)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~----~---~~------~~----~~~~~~---l~~~~~~~g~~~~a 271 (337)
+-+...|...+..... .-.++....+|.+. . .. +. ...... +...+.+.|..+.|
T Consensus 96 --~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 96 --PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred --CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 4467778777765544 33567777776642 1 10 01 111122 22335688999999
Q ss_pred HHHHHHHHhc---CCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCcc
Q 037592 272 ERVAKKIMEL---KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 272 ~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 319 (337)
..+++-+.+. .|..... ....+.+..|+..-+.++..
T Consensus 174 va~~Qa~lE~n~~~P~~~~~-----------~~~~~~~~~fe~FWeS~vpR 213 (321)
T PF08424_consen 174 VALWQALLEFNFFRPESLSS-----------SSFSERLESFEEFWESEVPR 213 (321)
T ss_pred HHHHHHHHHHHcCCcccccc-----------ccHHHHHHHHHHHhCcCCCC
Confidence 9999988883 3553111 11126667777777776643
No 465
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=52.30 E-value=75 Score=25.87 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=40.0
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
..+.+.++++.|....++...++|.++.-..--+-+|.+.|...-|++-++...++-
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 446677777777777777777777776666666777777777777777776655543
No 466
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.95 E-value=82 Score=22.19 Aligned_cols=43 Identities=12% Similarity=0.073 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhhCCC-CchhHHHHHHHHHhcCCHHHHHHHHhc
Q 037592 101 LGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQ 143 (337)
Q Consensus 101 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 143 (337)
.+.++|+.|...|+-. ....|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7778888888776643 355666677777888888888888763
No 467
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=51.43 E-value=1.8e+02 Score=25.97 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=29.3
Q ss_pred CCCchhHHHHHH-HHHhcCCChhHHHHHHHHHHh-----cCCCccchHHHH
Q 037592 248 CRHDSSLWEVLL-GACTTFRNAHVAERVAKKIME-----LKPDCHLSYVLL 292 (337)
Q Consensus 248 ~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~l 292 (337)
..||...|-..- ..|+..|+++..+++|+-++. +.|-++.+-..+
T Consensus 332 sh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssl 382 (615)
T KOG0508|consen 332 SHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSL 382 (615)
T ss_pred CCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHH
Confidence 456665444433 348899999999999988765 455555444433
No 468
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=51.02 E-value=1.1e+02 Score=23.99 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=15.5
Q ss_pred HHHhhcCchhhHHHHHHHHHHhc
Q 037592 192 SACSHMGLIDRGRKHFASMTKEY 214 (337)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~ 214 (337)
....+.|+.++|.+.|.+++...
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCC
Confidence 44556777777777777776543
No 469
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=50.94 E-value=1.4e+02 Score=24.69 Aligned_cols=168 Identities=10% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc-hhh
Q 037592 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL-IDR 202 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~ 202 (337)
++..+.+.++..+..+.+..+. ....-...+..+...|++..|++++.+..+ .--....|+++=..-.+..+ .+.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~--~l~~l~~~~c~~~L~~~L~e~~~~ 179 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ--LLEELKGYSCVRHLSSQLQETLEL 179 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHhcccchHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcC---CChhHHHHHHHHHH
Q 037592 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF---RNAHVAERVAKKIM 279 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 279 (337)
..+.++..+..--..-|+..|..+..+|.-.|+...+.+-+...-...=..+-..++..+... .......--|+.+-
T Consensus 180 i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~vv~~~~~~~~~~~~~~~~~~y~~lC 259 (291)
T PF10475_consen 180 IEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFSVVRSYVEQSESSEERSSKMSYKDLC 259 (291)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCHHHHH
Q ss_pred hcCCCccchHHHHHHHH
Q 037592 280 ELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 280 ~~~p~~~~~~~~l~~~~ 296 (337)
..-|. ......|...+
T Consensus 260 ~~v~~-~~~~~cl~~l~ 275 (291)
T PF10475_consen 260 KQVPS-DQFIPCLLELL 275 (291)
T ss_pred hhCCH-HHHHHHHHHHH
No 470
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=50.27 E-value=1.2e+02 Score=25.86 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=33.1
Q ss_pred hHHHHHHHHHh-cCCCc----hhHHHHHHHHHhcCCChhHHHHHHHHHHhc--CCCccchHHHHHHHH
Q 037592 236 LEEAETLIENA-DCRHD----SSLWEVLLGACTTFRNAHVAERVAKKIMEL--KPDCHLSYVLLDNVY 296 (337)
Q Consensus 236 ~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~ 296 (337)
.++...+++.+ ..-|+ +..|-.++......|.++.++.+|++++.. .|- ...-..++..+
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPi-eElR~~l~diL 185 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPI-EELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHH
Confidence 44555556543 22233 345666667777777777777777777663 333 23444444443
No 471
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.96 E-value=1.5e+02 Score=24.70 Aligned_cols=78 Identities=15% Similarity=0.035 Sum_probs=39.7
Q ss_pred HhHHHHHHHHHHhcCC----CCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037592 165 GEEALRIFDDMTEGGT----KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240 (337)
Q Consensus 165 ~~~a~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 240 (337)
.+.|.+.|+.....+. ..+......++....+.|..+.-..+++.. +. .++......++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~-~~---~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELY-KN---STSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHH-HT---TSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHH-hc---cCCHHHHHHHHHhhhccCCHHHHH
Confidence 3455666666665322 223334444555555666655544444444 22 345666667777777777776666
Q ss_pred HHHHHh
Q 037592 241 TLIENA 246 (337)
Q Consensus 241 ~~~~~~ 246 (337)
++++..
T Consensus 222 ~~l~~~ 227 (324)
T PF11838_consen 222 RLLDLL 227 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666653
No 472
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=49.62 E-value=56 Score=22.36 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=21.9
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
+..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33334444455555556655555544455544444455554443
No 473
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.62 E-value=48 Score=18.59 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=13.1
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCHhHHHHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGV 190 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 190 (337)
.|-.+++..++++|.+.|+..+...+..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 34444444445555444444444444333
No 474
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.33 E-value=76 Score=20.76 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
+.|......+...+...|++++|++.+-++
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455677777788888888888888776653
No 475
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.31 E-value=8.2 Score=32.19 Aligned_cols=92 Identities=10% Similarity=-0.119 Sum_probs=60.0
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC--CcH-HhHHHHHHHHHhCCCHhHHHH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--RNL-ITWNSMISGFAQNGRGEEALR 170 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~ 170 (337)
...|.++.|++.+...+..++ +....|..-..++.+.++...|++-++.... +|. ..|-.--.+....|+|++|..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 345667777777777777665 6666666677777777777777777666552 332 233333444456788888888
Q ss_pred HHHHHHhcCCCCCHhH
Q 037592 171 IFDDMTEGGTKPDHVS 186 (337)
Q Consensus 171 ~~~~m~~~~~~p~~~~ 186 (337)
.|....+.+..+....
T Consensus 204 dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 204 DLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHhccccHHHHH
Confidence 8888877766554443
No 476
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=47.15 E-value=1.1e+02 Score=22.12 Aligned_cols=19 Identities=0% Similarity=0.009 Sum_probs=9.0
Q ss_pred HHhhcCchhhHHHHHHHHH
Q 037592 193 ACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~ 211 (337)
++.+.++++.+.++.+.++
T Consensus 80 g~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444445555544444443
No 477
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=47.09 E-value=77 Score=20.47 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=27.4
Q ss_pred HhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHH
Q 037592 32 GKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESV 71 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 71 (337)
+...+.+.|.++++.++.+...+|.....++...|+..-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4455677777777777777777777777777666655443
No 478
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=46.89 E-value=1.7e+02 Score=24.27 Aligned_cols=114 Identities=8% Similarity=0.050 Sum_probs=83.3
Q ss_pred CCHHHHHHHHhcCC-----CCcHHhHHHHHHHHHh-CC-CHhHHHHHHHHHHh-cCCCCCHhHHHHHHHHHhhcCchhhH
Q 037592 132 GCVDFAHQIFLQMP-----VRNLITWNSMISGFAQ-NG-RGEEALRIFDDMTE-GGTKPDHVSFIGVLSACSHMGLIDRG 203 (337)
Q Consensus 132 g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a 203 (337)
..+.+|+++|+... -.|..+...+++.... .+ ....-.++.+-+.. .|..++..+...++..+++.+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34677888888433 3466777777777665 22 22222233333332 24567788888999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
.++++......+...|...|..++......|+..-..++.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999998865545667899999999999999999999999875
No 479
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=46.87 E-value=1.8e+02 Score=24.58 Aligned_cols=120 Identities=7% Similarity=0.088 Sum_probs=72.5
Q ss_pred hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-cHHhHHHHHHHHHh---CCCHhHHHHHH
Q 037592 99 LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--R-NLITWNSMISGFAQ---NGRGEEALRIF 172 (337)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~---~~~~~~a~~~~ 172 (337)
.+.-+.+++++++.++ .+......++..+.+..+.++..+-++++.. | +...|...+..... .-.++....+|
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3455677788777755 6677777778888888777777777777773 2 45566666654433 23455666666
Q ss_pred HHHHhc------CC------CCC--Hh---HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC
Q 037592 173 DDMTEG------GT------KPD--HV---SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219 (337)
Q Consensus 173 ~~m~~~------~~------~p~--~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 219 (337)
.+..+. +. .++ .. .+..+...+...|..+.|..+++.+++-.-+.|.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 554321 11 011 11 1222223345689999999999988765444454
No 480
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.66 E-value=29 Score=28.75 Aligned_cols=67 Identities=4% Similarity=-0.053 Sum_probs=52.8
Q ss_pred CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHH-HHHHHHHcCChhhHHHHHHHHHHh
Q 037592 249 RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVL-LDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 249 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
..|+..|...+.-..+.|.+.+.-.++.+.....|.+...|.. -..-+...++++.+..+|..-.+.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 3467778888777777888999999999999999999888766 344566778999998888765553
No 481
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=45.47 E-value=2.7e+02 Score=26.21 Aligned_cols=84 Identities=5% Similarity=0.073 Sum_probs=38.1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC-CCCCHhHHHHHHHHHhh---c
Q 037592 124 LVDLYAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDHVSFIGVLSACSH---M 197 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~---~ 197 (337)
....+.-.|+++.|++.+-+.. ..+.+.+-..+..|.-.+-.+... ..+.... -.|...-+..+|..|.+ .
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 3455677899999999998833 334444444343332222111111 2222211 01112456677777765 5
Q ss_pred CchhhHHHHHHHH
Q 037592 198 GLIDRGRKHFASM 210 (337)
Q Consensus 198 ~~~~~a~~~~~~~ 210 (337)
.+...|.+++--+
T Consensus 341 td~~~Al~Y~~li 353 (613)
T PF04097_consen 341 TDPREALQYLYLI 353 (613)
T ss_dssp T-HHHHHHHHHGG
T ss_pred cCHHHHHHHHHHH
Confidence 6788888888776
No 482
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.39 E-value=30 Score=31.90 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHh
Q 037592 163 GRGEEALRIFDDMTEGGTKPDHV 185 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p~~~ 185 (337)
|++.+|.+.+-.+.+....|...
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp -----------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHH
Confidence 45555555554544444444433
No 483
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.90 E-value=1.6e+02 Score=23.53 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=80.2
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHh-hcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037592 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS-HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (337)
.++..+.+.|+++++...++++...+...+..--+.+-.+|- ..|....+++++..+.....-..+ .....++.-|.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 356667788888888888888888766666665555555553 245556666666665433221212 222333333322
Q ss_pred c------CChHHHHHHHHHh--c--CCCchhHHHHHHHH-H----h--cCC-----ChhHHHHHHHHHHh-----cCCCc
Q 037592 233 A------GLLEEAETLIENA--D--CRHDSSLWEVLLGA-C----T--TFR-----NAHVAERVAKKIME-----LKPDC 285 (337)
Q Consensus 233 ~------g~~~~A~~~~~~~--~--~~~~~~~~~~l~~~-~----~--~~g-----~~~~a~~~~~~~~~-----~~p~~ 285 (337)
. .--.+...+++.. + ..+....|-.-+.+ | + ..| -.+.|.+.|+++.+ +.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 1 1112333333331 1 11112222111111 1 1 122 23667777777665 56665
Q ss_pred cchHHH----HHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 286 HLSYVL----LDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 286 ~~~~~~----l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
|.-... -+..|--.|+.++|.++.++..+..+
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 443222 22344557889998888877766544
No 484
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.83 E-value=68 Score=21.93 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=31.0
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 135 (337)
++..+...+..-.|.++++++.+.++..+..|....++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555666678888888887776666666556666777666543
No 485
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=44.77 E-value=2e+02 Score=24.52 Aligned_cols=172 Identities=5% Similarity=-0.041 Sum_probs=98.4
Q ss_pred CCCch---HhHHHHHHHHHhc---CChHHHHHHHHHcccCChhhHHH-----HHHHHHcCCChhHHHHHHHHHhhcCccc
Q 037592 17 LCGNV---VVESSLVDMYGKC---GLVDESHRVFDKMLKKNSVSSSA-----LLQGYCQTGDFESVIRIFREMEEIDLFS 85 (337)
Q Consensus 17 ~~~~~---~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 85 (337)
++|+. ..+|+++..-... ..++.|...|..=. ....|.. +.+.+++.++.+.+..+-+.+.......
T Consensus 122 FkP~~~klA~fhA~v~~~L~~p~S~yye~a~~Ylsg~~--~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~lP~~v 199 (340)
T PF12069_consen 122 FKPSQEKLAMFHAQVRAQLGQPASQYYEHAQAYLSGQL--GWDNWQTLGLQGIADICARLDQEDNAQLLRKALPHLPPEV 199 (340)
T ss_pred cCCChHHHHHHHHHHHHHcCCCcchhHHHHHHHHcCCc--chhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhhCChHH
Confidence 56665 4678888765543 35777777664322 2444544 5578889888887777766666633334
Q ss_pred HHHHHHHHHhhchhhh-hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC-CC---cHHhHHHHH-HHH
Q 037592 86 FGIVLRACAGLAALRL-GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-VR---NLITWNSMI-SGF 159 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---~~~~~~~l~-~~~ 159 (337)
...+..++....-.+. +..+.+.+... +|......++++.............+..+. .+ +......+. ++.
T Consensus 200 l~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W 276 (340)
T PF12069_consen 200 LYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCW 276 (340)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCc
Confidence 5555555544443333 33344444433 788888889999888776665555344444 22 333322222 233
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 196 (337)
....+.+-...+++++-.. ++...|+.+..-...
T Consensus 277 ~~L~d~~~l~~fle~LA~~---~~~~lF~qlfaDLv~ 310 (340)
T PF12069_consen 277 QWLKDPQLLRLFLERLAQQ---DDQALFNQLFADLVM 310 (340)
T ss_pred hhcCCHHHHHHHHHHHHcc---cHHHHHHHHHHHHHh
Confidence 3345666666667666542 345666666554443
No 486
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.76 E-value=1.9e+02 Score=24.42 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-------hcCCCchhHHHHHHHH-HhcCCChhHH
Q 037592 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-------ADCRHDSSLWEVLLGA-CTTFRNAHVA 271 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~~~~~~l~~~-~~~~g~~~~a 271 (337)
+++-.+..+.+.+..|-.--...+.....-|++.|+-+.|.+.+.+ +|.+-|+..+..-+.. |..+.-+.+-
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ 163 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES 163 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 3444444444433323333356677778899999999999999875 3666677655443333 5555555666
Q ss_pred HHHHHHHHhcCC-----CccchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 272 ERVAKKIMELKP-----DCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 272 ~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
++..+.+.+..- +...+|..+-. ....++.+|-.+|-+..
T Consensus 164 iekak~liE~GgDWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 164 IEKAKSLIEEGGDWERRNRLKVYQGLYC--MSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHhCCChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHc
Confidence 666666666322 22345544433 34458888888876543
No 487
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=44.68 E-value=65 Score=22.29 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=32.1
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (337)
.++..+...+..-.|.++++.+.+.++..+..|...-++.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45666666666788888999888887777766655566777766643
No 488
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.57 E-value=83 Score=26.65 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=46.2
Q ss_pred CCCh-hHHHHHHHHHhh--cCcc----cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 037592 65 TGDF-ESVIRIFREMEE--IDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129 (337)
Q Consensus 65 ~g~~-~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (337)
.|-. ++++.+++.+.. |+.. -|..+++.....|.++.++.+|++++..|..|-...-..+++.+-
T Consensus 115 eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 115 EGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred cCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4443 467777776666 5543 466677777778888888888888888888887777666666654
No 489
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=43.86 E-value=1.1e+02 Score=21.46 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHH-------HHHHhc--CCCchhHHHHHH----HHHhcCCChhHHHHHHHHHHh
Q 037592 220 IEHYNCMVDLLGRAGLLEEAET-------LIENAD--CRHDSSLWEVLL----GACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~-------~~~~~~--~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~ 280 (337)
...+..|..++...|++++++. +|++-+ .+.....|-..+ .++...|..++|...|+.+-+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3445566667777777766543 454433 233455565554 346788899999888876654
No 490
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.64 E-value=2.7e+02 Score=25.72 Aligned_cols=155 Identities=9% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHhcCC--------------CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHH----------------
Q 037592 128 YAKCGCVDFAHQIFLQMP--------------VR-NLITWNSMISGFAQNGRGEEALRIFDDMT---------------- 176 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~--------------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~---------------- 176 (337)
+.....+++|...|.-.. .| .+.+...+...+...|+.+-|.++.++.+
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred ----hcCCCCCHhHHHHH---HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHH---
Q 037592 177 ----EGGTKPDHVSFIGV---LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG-RAGLLEEAETLIEN--- 245 (337)
Q Consensus 177 ----~~~~~p~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~--- 245 (337)
.....-|-..|.++ +....+.|-+..|.++-+.++.- ...-|+.....+|+.|+ ++.+++--+++++.
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-DPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q ss_pred ---hcCCCchhHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCC
Q 037592 246 ---ADCRHDSSLWEVLLGACTTFRN---AHVAERVAKKIMELKP 283 (337)
Q Consensus 246 ---~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p 283 (337)
+..-|+-..-.++...|..... -+.|...+.++....|
T Consensus 407 ~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 407 MNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
No 491
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=43.49 E-value=48 Score=22.95 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=17.9
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 198 (337)
+..+...+.+-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3333333344445555555554444444444333344444333
No 492
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=43.27 E-value=80 Score=25.11 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=45.0
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCch
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHDS 252 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~ 252 (337)
...+.++.+.+.+++.+++. -.+-+...|..+...--+.|+++.|.+.|++ +...|..
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34577888999999998864 2244578888888888999999999999987 4555544
No 493
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=42.97 E-value=1.7e+02 Score=23.30 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=17.9
Q ss_pred cCCChhHHHHHHHHHHhcCCCc
Q 037592 264 TFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
..++...|..+++++.+++|+.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 4567788999999999988873
No 494
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=42.86 E-value=2.7e+02 Score=25.58 Aligned_cols=44 Identities=11% Similarity=0.233 Sum_probs=29.1
Q ss_pred hHHHHHHHHHcc--------cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 37 VDESHRVFDKML--------KKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 37 ~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
-..+..+|.+.+ ...+..|..+...|.+.+++.+|+..|.+.-.
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 444566666652 22456688888889999999999998887644
No 495
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.81 E-value=77 Score=19.29 Aligned_cols=50 Identities=12% Similarity=-0.136 Sum_probs=33.8
Q ss_pred cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 037592 81 IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131 (337)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (337)
|....++.++..+++-.-.+.++..+.++++.|. -+..+|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 4555677777777777778888888888888776 5666666666555543
No 496
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=42.60 E-value=22 Score=21.49 Aligned_cols=21 Identities=5% Similarity=0.091 Sum_probs=14.9
Q ss_pred CchhhHHHHHHHHhcC-CCCch
Q 037592 1 RLKQGKEVHAKVITLG-LCGNV 21 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~-~~~~~ 21 (337)
+++.|...|..+...| ++|+.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 5678888888888765 55543
No 497
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.01 E-value=1.2e+02 Score=25.07 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHH-hcCChHHHHHHHHHhc-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh------cCCCccc
Q 037592 216 IKPKIEHYNCMVDLLG-RAGLLEEAETLIENAD-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIME------LKPDCHL 287 (337)
Q Consensus 216 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~ 287 (337)
++.|...++.|+.--- +...++++++-.++.. .......|..+..-|++.++.+.+.++.++..+ ..-+--.
T Consensus 77 ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l 156 (412)
T COG5187 77 IKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFL 156 (412)
T ss_pred eehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHH
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+-..|+..|....-.++-++..+.|.++|
T Consensus 157 ~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 157 CKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhC
No 498
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.96 E-value=3.5e+02 Score=26.58 Aligned_cols=135 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHH
Q 037592 29 DMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQ 108 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 108 (337)
......|+++.|++.-..+ .+..+|..|+....++|+.+-|+..|++.+. |..|--.|.-.|+.++..++.+-
T Consensus 651 ~LaLe~gnle~ale~akkl--dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn-----fekLsfLYliTgn~eKL~Km~~i 723 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKL--DDKDVWERLGEEALRQGNHQIAEMCYQRTKN-----FEKLSFLYLITGNLEKLSKMMKI 723 (1202)
T ss_pred eeehhcCCHHHHHHHHHhc--CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh-----hhheeEEEEEeCCHHHHHHHHHH
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC
Q 037592 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181 (337)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 181 (337)
+..++- .......-.-.|+.++-.++++.....+..-..+... |.-++|.++.++......+
T Consensus 724 ae~r~D------~~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~-----G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 724 AEIRND------ATGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAH-----GLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred HHhhhh------hHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhc-----CcHHHHHHHHHhhccccCC
No 499
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.81 E-value=3.3e+02 Score=26.21 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=91.0
Q ss_pred HHHHHHHhhCCCC---chhHHHHHHHHHhcCCHHHHHHHHhcCC-CCcHH----------hHHHHHHHHHhCCCHhHHHH
Q 037592 105 VHCQYIRRSGCKD---VIIESALVDLYAKCGCVDFAHQIFLQMP-VRNLI----------TWNSMISGFAQNGRGEEALR 170 (337)
Q Consensus 105 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----------~~~~l~~~~~~~~~~~~a~~ 170 (337)
++.+|.++--.|+ ..+...++-.|....+++..+++.+.+. -||.. .|...++---+-|+-++|+.
T Consensus 185 ~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~ 264 (1226)
T KOG4279|consen 185 YLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALN 264 (1226)
T ss_pred HHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHH
Confidence 4455554422233 3445556667777788888888877766 23221 22222332335677888888
Q ss_pred HHHHHHhc--CCCCCHhHHH-----HH--HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHH
Q 037592 171 IFDDMTEG--GTKPDHVSFI-----GV--LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG-LLEEAE 240 (337)
Q Consensus 171 ~~~~m~~~--~~~p~~~~~~-----~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~ 240 (337)
..-.+.+. .+.||..... -+ -..|...+..+.|...|+++- .+.|+...--.+...+...| .++...
T Consensus 265 ~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fens~ 341 (1226)
T KOG4279|consen 265 TVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFENSL 341 (1226)
T ss_pred HHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccchH
Confidence 77777654 3455543221 11 122334455677888888764 44665443333333333333 233222
Q ss_pred HHHH------H-hcCCCch----hHH--HHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 241 TLIE------N-ADCRHDS----SLW--EVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 241 ~~~~------~-~~~~~~~----~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
++-. . ++.+-.. ..| ...+.+-.-.+++.+|+...+.|.+++|.
T Consensus 342 Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 342 ELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 2211 1 1212111 111 12334445567788888888888887777
No 500
>PRK02287 hypothetical protein; Provisional
Probab=41.74 E-value=1.5e+02 Score=22.29 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHH-HHHHHHhcCCChhHHHHHHHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWE-VLLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
..+..+++.++.-.|..+.|.++++..+.-++-...| .++..|.+..+.++..++-++..
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3455666667777777777777777665444444443 35566776666666665555443
Done!