Query 037592
Match_columns 337
No_of_seqs 480 out of 1394
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 03:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7.1E-33 2.4E-37 249.7 33.7 321 1-328 215-590 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-31 3.7E-36 242.0 33.3 310 1-315 99-504 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.6E-29 3.3E-33 211.2 35.9 307 3-314 50-367 (388)
4 4g26_A Pentatricopeptide repea 100.0 5.3E-31 1.8E-35 229.8 20.6 206 5-233 9-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 5.6E-28 1.9E-32 206.4 36.1 310 1-315 14-334 (388)
6 4g26_A Pentatricopeptide repea 100.0 2.2E-30 7.5E-35 225.9 19.8 181 84-265 27-223 (501)
7 2y4t_A DNAJ homolog subfamily 100.0 3.1E-26 1.1E-30 199.3 31.8 305 6-315 12-358 (450)
8 2y4t_A DNAJ homolog subfamily 100.0 2.6E-25 9.1E-30 193.4 33.0 305 1-312 41-406 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.4E-23 4.6E-28 185.6 30.9 312 1-317 21-480 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 4.5E-23 1.5E-27 173.6 32.3 294 20-316 2-336 (359)
11 2gw1_A Mitochondrial precursor 99.9 1.4E-23 4.7E-28 185.5 30.1 294 21-318 6-404 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 1E-22 3.4E-27 171.5 31.4 295 1-300 18-354 (359)
13 3fp2_A TPR repeat-containing p 99.9 7.6E-23 2.6E-27 181.9 32.1 312 1-318 40-494 (537)
14 3hym_B Cell division cycle pro 99.9 1.2E-22 4E-27 169.3 29.0 283 17-301 18-320 (330)
15 3hym_B Cell division cycle pro 99.9 6E-22 2.1E-26 164.9 28.3 274 49-328 19-310 (330)
16 1fch_A Peroxisomal targeting s 99.9 2.3E-22 7.8E-27 170.2 22.9 280 30-312 34-356 (368)
17 4eqf_A PEX5-related protein; a 99.9 3E-22 1E-26 169.4 19.7 258 51-311 64-352 (365)
18 3fp2_A TPR repeat-containing p 99.9 6.6E-21 2.3E-25 169.4 28.0 293 20-317 24-409 (537)
19 3mkr_A Coatomer subunit epsilo 99.9 3.5E-20 1.2E-24 151.4 28.6 271 28-308 6-287 (291)
20 1fch_A Peroxisomal targeting s 99.9 4.3E-21 1.5E-25 162.3 23.7 276 33-317 13-316 (368)
21 3cv0_A Peroxisome targeting si 99.9 1.1E-20 3.8E-25 157.0 22.5 271 22-314 22-314 (327)
22 4eqf_A PEX5-related protein; a 99.9 5.7E-21 2E-25 161.6 20.4 233 82-317 64-312 (365)
23 1b89_A Protein (clathrin heavy 99.9 1.5E-21 5.3E-26 163.5 11.6 268 32-327 14-287 (449)
24 4g1t_A Interferon-induced prot 99.9 7.4E-19 2.5E-23 153.7 28.9 322 1-326 66-470 (472)
25 3cv0_A Peroxisome targeting si 99.9 4.6E-20 1.6E-24 153.3 20.1 240 1-245 36-311 (327)
26 1b89_A Protein (clathrin heavy 99.9 1.3E-21 4.6E-26 163.8 9.2 275 2-308 19-304 (449)
27 3mkr_A Coatomer subunit epsilo 99.8 3.5E-19 1.2E-23 145.4 22.5 246 59-317 6-266 (291)
28 2xm6_A Protein corresponding t 99.8 4.4E-17 1.5E-21 143.2 35.4 301 2-317 59-434 (490)
29 2xm6_A Protein corresponding t 99.8 6.9E-17 2.4E-21 142.0 35.0 270 2-284 131-435 (490)
30 3uq3_A Heat shock protein STI1 99.8 7E-18 2.4E-22 135.2 22.5 219 85-316 7-237 (258)
31 3u4t_A TPR repeat-containing p 99.8 1.3E-17 4.4E-22 134.9 22.9 240 58-300 9-269 (272)
32 3uq3_A Heat shock protein STI1 99.8 1.3E-17 4.4E-22 133.6 21.5 228 22-292 6-253 (258)
33 2pl2_A Hypothetical conserved 99.8 8.5E-18 2.9E-22 131.3 19.7 196 115-313 2-212 (217)
34 1xnf_A Lipoprotein NLPI; TPR, 99.8 5.9E-18 2E-22 137.0 19.2 237 64-309 17-269 (275)
35 2ooe_A Cleavage stimulation fa 99.8 3.6E-16 1.2E-20 138.8 30.1 311 1-316 27-455 (530)
36 4g1t_A Interferon-induced prot 99.8 4.4E-16 1.5E-20 136.1 30.0 293 19-315 49-401 (472)
37 3spa_A Mtrpol, DNA-directed RN 99.8 2.6E-19 8.8E-24 161.9 8.5 162 117-279 126-308 (1134)
38 2h6f_A Protein farnesyltransfe 99.8 4.5E-17 1.5E-21 137.4 21.7 244 52-299 97-366 (382)
39 3u4t_A TPR repeat-containing p 99.8 4.5E-16 1.5E-20 125.8 26.6 230 21-252 3-254 (272)
40 2pl2_A Hypothetical conserved 99.8 3.4E-17 1.2E-21 127.9 18.9 192 19-246 3-211 (217)
41 2ho1_A Type 4 fimbrial biogene 99.8 4.8E-16 1.6E-20 124.2 24.7 200 86-288 40-245 (252)
42 2q7f_A YRRB protein; TPR, prot 99.8 5.8E-17 2E-21 128.7 18.7 206 85-294 25-235 (243)
43 1ouv_A Conserved hypothetical 99.8 1.1E-15 3.6E-20 123.8 25.8 221 54-284 8-254 (273)
44 3sf4_A G-protein-signaling mod 99.8 3.7E-17 1.3E-21 139.8 17.9 287 18-304 6-365 (406)
45 1ouv_A Conserved hypothetical 99.8 1.9E-15 6.4E-20 122.4 26.4 224 83-318 6-254 (273)
46 4a1s_A PINS, partner of inscut 99.8 6.3E-17 2.1E-21 138.9 18.7 261 55-315 51-372 (411)
47 2h6f_A Protein farnesyltransfe 99.8 8.1E-17 2.8E-21 135.9 18.6 240 84-330 98-361 (382)
48 3e4b_A ALGK; tetratricopeptide 99.7 4.2E-16 1.4E-20 135.2 23.4 303 1-316 18-352 (452)
49 2ooe_A Cleavage stimulation fa 99.7 1.1E-14 3.7E-19 129.3 32.7 212 101-317 256-494 (530)
50 3sf4_A G-protein-signaling mod 99.7 1.4E-16 4.7E-21 136.3 19.6 265 51-315 8-336 (406)
51 2vq2_A PILW, putative fimbrial 99.7 1.1E-15 3.7E-20 119.7 23.2 194 90-286 15-216 (225)
52 3ro2_A PINS homolog, G-protein 99.7 1.2E-16 4.1E-21 132.8 18.4 267 23-315 7-332 (338)
53 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6.1E-22 150.1 13.8 114 149-263 127-247 (1134)
54 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.2E-16 4.1E-21 129.3 17.1 237 31-275 15-269 (275)
55 2ho1_A Type 4 fimbrial biogene 99.7 9.4E-16 3.2E-20 122.5 22.0 198 118-317 37-240 (252)
56 2vq2_A PILW, putative fimbrial 99.7 1.2E-15 4E-20 119.5 21.9 199 116-316 6-212 (225)
57 4a1s_A PINS, partner of inscut 99.7 2.1E-16 7.2E-21 135.6 18.5 263 22-284 49-375 (411)
58 1xi4_A Clathrin heavy chain; a 99.7 1.2E-14 4.1E-19 135.8 31.0 252 33-312 1088-1339(1630)
59 2q7f_A YRRB protein; TPR, prot 99.7 4E-16 1.4E-20 123.8 18.7 199 116-317 21-224 (243)
60 3ro2_A PINS homolog, G-protein 99.7 6E-16 2E-20 128.6 19.2 256 1-284 20-335 (338)
61 4abn_A Tetratricopeptide repea 99.7 2.4E-16 8.2E-21 137.6 15.8 210 98-312 83-318 (474)
62 1xi4_A Clathrin heavy chain; a 99.7 3.2E-14 1.1E-18 133.1 29.6 263 20-308 1104-1377(1630)
63 3ulq_A Response regulator aspa 99.7 2.3E-15 8E-20 128.0 20.0 285 31-316 22-369 (383)
64 3vtx_A MAMA; tetratricopeptide 99.7 1.1E-14 3.8E-19 110.4 21.2 166 148-316 4-171 (184)
65 3ulq_A Response regulator aspa 99.7 7.4E-15 2.5E-19 124.9 20.8 281 1-281 27-368 (383)
66 3e4b_A ALGK; tetratricopeptide 99.7 1.1E-13 3.9E-18 120.0 28.5 301 2-318 54-390 (452)
67 2ond_A Cleavage stimulation fa 99.7 5.6E-14 1.9E-18 115.8 24.3 214 69-286 33-275 (308)
68 3q15_A PSP28, response regulat 99.6 8.3E-14 2.8E-18 118.2 24.1 297 18-315 7-365 (378)
69 2ond_A Cleavage stimulation fa 99.6 1.5E-13 5E-18 113.2 23.7 214 100-318 33-273 (308)
70 3nf1_A KLC 1, kinesin light ch 99.6 1.8E-15 6.2E-20 124.5 12.0 240 52-315 27-307 (311)
71 3vtx_A MAMA; tetratricopeptide 99.6 3.8E-14 1.3E-18 107.5 18.0 157 20-177 4-169 (184)
72 4abn_A Tetratricopeptide repea 99.6 9.7E-15 3.3E-19 127.5 16.6 208 35-246 82-318 (474)
73 3q15_A PSP28, response regulat 99.6 5.6E-13 1.9E-17 113.1 25.1 279 1-280 27-364 (378)
74 1hz4_A MALT regulatory protein 99.6 2.5E-12 8.6E-17 108.8 28.3 260 25-284 18-325 (373)
75 4gyw_A UDP-N-acetylglucosamine 99.6 1.5E-13 5.2E-18 124.9 21.2 165 148-315 8-174 (723)
76 3as5_A MAMA; tetratricopeptide 99.6 1.8E-13 6.2E-18 103.4 18.2 161 153-316 12-174 (186)
77 3nf1_A KLC 1, kinesin light ch 99.6 2.2E-14 7.7E-19 117.9 12.0 241 20-284 26-310 (311)
78 3as5_A MAMA; tetratricopeptide 99.6 1.4E-12 4.7E-17 98.5 20.2 167 118-287 8-179 (186)
79 4i17_A Hypothetical protein; T 99.6 1E-12 3.4E-17 103.2 20.0 203 82-295 6-223 (228)
80 1hz4_A MALT regulatory protein 99.6 3.8E-12 1.3E-16 107.7 24.9 259 56-314 18-321 (373)
81 4i17_A Hypothetical protein; T 99.5 8.8E-13 3E-17 103.6 18.9 191 117-317 6-211 (228)
82 1qqe_A Vesicular transport pro 99.5 6E-12 2.1E-16 102.7 21.4 240 3-285 2-273 (292)
83 1qqe_A Vesicular transport pro 99.5 1.7E-12 5.7E-17 106.1 17.7 201 98-313 32-267 (292)
84 4gyw_A UDP-N-acetylglucosamine 99.5 1.2E-12 4.1E-17 119.0 17.7 155 21-176 9-172 (723)
85 3edt_B KLC 2, kinesin light ch 99.5 3.3E-13 1.1E-17 109.2 12.5 197 118-314 43-280 (283)
86 3mv2_B Coatomer subunit epsilo 99.4 7E-11 2.4E-15 95.1 20.5 241 28-287 20-288 (310)
87 3edt_B KLC 2, kinesin light ch 99.4 6E-12 2.1E-16 101.7 14.7 200 20-245 42-277 (283)
88 3qky_A Outer membrane assembly 99.4 2.1E-11 7.1E-16 97.8 17.3 185 117-303 14-249 (261)
89 3mv2_B Coatomer subunit epsilo 99.4 1.2E-10 4.2E-15 93.7 21.4 238 60-316 21-283 (310)
90 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.1E-10 3.8E-15 91.3 19.9 185 118-319 4-217 (225)
91 3qky_A Outer membrane assembly 99.4 8.6E-11 2.9E-15 94.2 19.3 171 146-317 12-226 (261)
92 2fo7_A Synthetic consensus TPR 99.4 8.6E-11 2.9E-15 83.4 16.9 128 187-316 4-133 (136)
93 2pzi_A Probable serine/threoni 99.3 8.3E-11 2.9E-15 107.2 19.0 169 94-267 402-583 (681)
94 3urz_A Uncharacterized protein 99.3 9.1E-11 3.1E-15 90.6 15.4 131 152-285 57-190 (208)
95 4ga2_A E3 SUMO-protein ligase 99.3 9.8E-12 3.4E-16 90.7 9.3 142 156-301 4-149 (150)
96 3qou_A Protein YBBN; thioredox 99.3 1.9E-10 6.5E-15 93.5 17.8 177 134-314 102-283 (287)
97 2pzi_A Probable serine/threoni 99.3 2E-11 7E-16 111.2 13.3 169 129-301 402-583 (681)
98 2fo7_A Synthetic consensus TPR 99.3 3.3E-10 1.1E-14 80.3 17.0 131 151-284 3-135 (136)
99 3dra_A Protein farnesyltransfe 99.3 7.6E-09 2.6E-13 84.0 25.4 225 66-294 47-301 (306)
100 3urz_A Uncharacterized protein 99.3 1.4E-10 4.7E-15 89.6 14.6 23 26-48 9-31 (208)
101 2ifu_A Gamma-SNAP; membrane fu 99.3 5.5E-10 1.9E-14 91.8 18.7 218 64-307 3-253 (307)
102 3rjv_A Putative SEL1 repeat pr 99.3 7.6E-10 2.6E-14 85.7 18.5 162 148-318 17-200 (212)
103 4e6h_A MRNA 3'-END-processing 99.3 2E-08 6.8E-13 90.6 29.7 166 151-317 345-535 (679)
104 2r5s_A Uncharacterized protein 99.2 5.2E-10 1.8E-14 83.9 16.1 57 121-177 9-68 (176)
105 2vsy_A XCC0866; transferase, g 99.2 3.1E-10 1.1E-14 101.5 17.3 160 131-293 2-169 (568)
106 2r5s_A Uncharacterized protein 99.2 4.1E-10 1.4E-14 84.4 15.4 159 85-245 8-169 (176)
107 3rjv_A Putative SEL1 repeat pr 99.2 2.8E-10 9.6E-15 88.1 14.5 138 3-144 3-155 (212)
108 3qou_A Protein YBBN; thioredox 99.2 8.3E-10 2.8E-14 89.7 17.6 156 119-278 118-281 (287)
109 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.4E-09 4.6E-14 85.1 18.0 178 20-212 3-212 (225)
110 2ifu_A Gamma-SNAP; membrane fu 99.2 9.6E-10 3.3E-14 90.3 17.8 217 2-242 7-254 (307)
111 4ga2_A E3 SUMO-protein ligase 99.2 1.3E-10 4.5E-15 84.6 11.2 138 93-234 7-148 (150)
112 3dra_A Protein farnesyltransfe 99.2 9.1E-09 3.1E-13 83.6 22.7 226 95-325 44-296 (306)
113 2vsy_A XCC0866; transferase, g 99.2 7.9E-10 2.7E-14 98.9 17.9 147 96-246 2-154 (568)
114 4e6h_A MRNA 3'-END-processing 99.2 4.8E-09 1.6E-13 94.5 21.7 212 71-285 328-574 (679)
115 3u3w_A Transcriptional activat 99.1 2.4E-08 8.3E-13 81.3 21.8 163 152-314 78-265 (293)
116 3gyz_A Chaperone protein IPGC; 99.1 1.2E-09 4.1E-14 79.3 12.2 97 220-316 36-134 (151)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1E-08 3.5E-13 79.1 17.9 124 121-245 9-146 (213)
118 2uy1_A Cleavage stimulation fa 99.1 1E-07 3.6E-12 83.2 25.5 174 2-178 30-242 (493)
119 2c2l_A CHIP, carboxy terminus 99.1 3.8E-10 1.3E-14 91.4 9.6 189 118-315 4-199 (281)
120 4gco_A Protein STI-1; structur 99.1 4.2E-09 1.4E-13 74.1 13.7 107 186-294 15-123 (126)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.1 3.9E-09 1.3E-13 81.5 14.8 141 22-178 7-150 (213)
122 1a17_A Serine/threonine protei 99.1 8.7E-09 3E-13 76.0 15.3 127 186-314 15-145 (166)
123 3u3w_A Transcriptional activat 99.0 2.4E-08 8.1E-13 81.4 18.5 87 58-144 81-181 (293)
124 2qfc_A PLCR protein; TPR, HTH, 99.0 8.2E-09 2.8E-13 84.1 15.5 157 89-245 81-262 (293)
125 2qfc_A PLCR protein; TPR, HTH, 99.0 1.9E-08 6.5E-13 81.9 17.6 164 151-314 77-265 (293)
126 4gco_A Protein STI-1; structur 99.0 6.6E-09 2.3E-13 73.1 12.7 101 216-316 8-111 (126)
127 1na0_A Designed protein CTPR3; 99.0 2.4E-08 8.1E-13 69.5 14.8 114 185-300 10-125 (125)
128 2vgx_A Chaperone SYCD; alterna 99.0 1.6E-09 5.6E-14 78.6 8.8 93 222-314 23-117 (148)
129 2e2e_A Formate-dependent nitri 99.0 5E-09 1.7E-13 78.4 11.8 124 160-286 21-149 (177)
130 2vyi_A SGTA protein; chaperone 99.0 1.9E-08 6.5E-13 70.7 14.2 116 185-302 13-130 (131)
131 3gw4_A Uncharacterized protein 99.0 3.3E-09 1.1E-13 81.2 10.6 144 32-175 3-173 (203)
132 2lni_A Stress-induced-phosphop 99.0 1.6E-08 5.4E-13 71.4 13.4 115 184-300 16-132 (133)
133 4f3v_A ESX-1 secretion system 99.0 1.8E-08 6.2E-13 80.1 14.6 181 64-246 18-234 (282)
134 3q7a_A Farnesyltransferase alp 99.0 5E-07 1.7E-11 74.3 23.4 173 60-236 62-258 (349)
135 4f3v_A ESX-1 secretion system 99.0 2.1E-08 7.1E-13 79.8 14.7 190 95-292 18-247 (282)
136 1p5q_A FKBP52, FK506-binding p 99.0 1.6E-08 5.5E-13 84.0 14.6 95 220-314 196-293 (336)
137 2c2l_A CHIP, carboxy terminus 99.0 5.1E-09 1.8E-13 84.7 10.9 95 20-114 3-103 (281)
138 2xcb_A PCRH, regulatory protei 98.9 2.6E-08 8.7E-13 71.6 12.2 95 190-286 24-120 (142)
139 3gw4_A Uncharacterized protein 98.9 3.4E-08 1.2E-12 75.4 13.6 151 130-280 4-175 (203)
140 2e2e_A Formate-dependent nitri 98.9 1E-08 3.5E-13 76.8 10.4 113 64-177 22-143 (177)
141 2fbn_A 70 kDa peptidylprolyl i 98.9 2.2E-09 7.5E-14 82.1 6.6 173 124-317 10-188 (198)
142 3dss_A Geranylgeranyl transfer 98.9 1.8E-06 6.1E-11 70.6 24.1 226 64-294 41-317 (331)
143 3q7a_A Farnesyltransferase alp 98.9 4.3E-07 1.5E-11 74.6 20.4 227 94-325 65-340 (349)
144 3upv_A Heat shock protein STI1 98.9 2.7E-08 9.2E-13 69.8 11.7 93 222-314 6-100 (126)
145 3gyz_A Chaperone protein IPGC; 98.9 1E-07 3.6E-12 69.0 14.6 99 185-285 37-137 (151)
146 2vgx_A Chaperone SYCD; alterna 98.9 1.7E-08 5.7E-13 73.2 10.3 90 121-211 24-116 (148)
147 1a17_A Serine/threonine protei 98.9 6.7E-08 2.3E-12 71.1 13.5 126 151-279 15-144 (166)
148 2kck_A TPR repeat; tetratricop 98.9 2.6E-08 8.8E-13 67.9 10.2 96 222-317 8-108 (112)
149 2lni_A Stress-induced-phosphop 98.9 7.2E-08 2.5E-12 68.0 12.8 114 18-132 13-132 (133)
150 3dss_A Geranylgeranyl transfer 98.9 2.2E-06 7.6E-11 70.1 22.9 219 94-316 40-305 (331)
151 1p5q_A FKBP52, FK506-binding p 98.8 3E-08 1E-12 82.4 11.7 93 118-211 196-292 (336)
152 1na0_A Designed protein CTPR3; 98.8 1.1E-07 3.6E-12 66.1 13.0 109 21-130 9-123 (125)
153 1elw_A TPR1-domain of HOP; HOP 98.8 1.8E-07 6.2E-12 64.2 13.9 107 186-294 6-114 (118)
154 2vyi_A SGTA protein; chaperone 98.8 5.4E-08 1.8E-12 68.3 11.4 114 20-134 11-130 (131)
155 3q49_B STIP1 homology and U bo 98.8 9.4E-08 3.2E-12 67.9 12.7 96 219-314 8-105 (137)
156 3upv_A Heat shock protein STI1 98.8 1.2E-07 4.1E-12 66.4 12.8 108 186-295 6-121 (126)
157 4b4t_Q 26S proteasome regulato 98.8 9.4E-07 3.2E-11 76.0 20.9 185 28-212 11-244 (434)
158 3sz7_A HSC70 cochaperone (SGT) 98.8 6.5E-08 2.2E-12 71.3 11.8 109 183-293 10-120 (164)
159 1hxi_A PEX5, peroxisome target 98.8 3.4E-08 1.2E-12 68.8 9.6 93 223-315 20-114 (121)
160 2xcb_A PCRH, regulatory protei 98.8 8.6E-08 2.9E-12 68.8 12.0 95 221-315 19-115 (142)
161 3sz7_A HSC70 cochaperone (SGT) 98.8 1.8E-07 6.3E-12 68.9 13.9 96 148-246 10-105 (164)
162 4b4t_Q 26S proteasome regulato 98.8 5.5E-07 1.9E-11 77.4 18.7 159 122-280 59-244 (434)
163 4gcn_A Protein STI-1; structur 98.8 6.7E-08 2.3E-12 68.0 10.6 96 187-284 11-115 (127)
164 2dba_A Smooth muscle cell asso 98.8 1.8E-07 6.2E-12 67.3 13.2 106 184-292 28-139 (148)
165 4gcn_A Protein STI-1; structur 98.8 1.4E-07 4.9E-12 66.2 12.0 94 151-245 10-108 (127)
166 2fbn_A 70 kDa peptidylprolyl i 98.8 9.3E-09 3.2E-13 78.5 5.7 159 27-204 10-176 (198)
167 1elw_A TPR1-domain of HOP; HOP 98.8 1.6E-07 5.6E-12 64.4 11.6 98 219-316 3-102 (118)
168 2hr2_A Hypothetical protein; a 98.7 1E-07 3.6E-12 68.6 10.3 62 254-315 59-131 (159)
169 2dba_A Smooth muscle cell asso 98.7 4.1E-07 1.4E-11 65.4 13.7 92 150-245 29-124 (148)
170 2kck_A TPR repeat; tetratricop 98.7 3.8E-07 1.3E-11 61.9 12.4 99 185-285 7-110 (112)
171 3q49_B STIP1 homology and U bo 98.7 3E-07 1E-11 65.3 12.1 100 183-284 8-109 (137)
172 2xev_A YBGF; tetratricopeptide 98.7 2.4E-07 8.2E-12 65.0 11.2 99 189-289 7-113 (129)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 3.4E-07 1.2E-11 79.4 14.4 129 186-314 270-414 (457)
174 1wao_1 Serine/threonine protei 98.7 1.2E-07 4.3E-12 82.5 10.8 118 191-310 13-134 (477)
175 1elr_A TPR2A-domain of HOP; HO 98.7 3.2E-07 1.1E-11 64.3 11.1 107 187-296 7-122 (131)
176 2uy1_A Cleavage stimulation fa 98.7 1.8E-05 6.1E-10 69.1 24.2 200 69-280 196-412 (493)
177 3ro3_A PINS homolog, G-protein 98.6 2.8E-07 9.5E-12 67.2 10.2 24 187-210 132-155 (164)
178 2xev_A YBGF; tetratricopeptide 98.6 1.3E-06 4.4E-11 61.2 13.2 88 155-245 8-101 (129)
179 3ro3_A PINS homolog, G-protein 98.6 5.2E-07 1.8E-11 65.7 11.2 94 222-315 51-158 (164)
180 3k9i_A BH0479 protein; putativ 98.6 9E-08 3.1E-12 66.2 6.4 89 197-286 3-95 (117)
181 1elr_A TPR2A-domain of HOP; HO 98.6 3.6E-07 1.2E-11 64.0 9.7 98 220-317 4-110 (131)
182 2if4_A ATFKBP42; FKBP-like, al 98.6 2.7E-07 9.4E-12 76.6 10.2 150 149-318 179-331 (338)
183 3rkv_A Putative peptidylprolyl 98.6 4.5E-07 1.6E-11 66.6 10.3 102 185-286 12-131 (162)
184 1hxi_A PEX5, peroxisome target 98.6 6.4E-07 2.2E-11 62.2 10.5 97 187-285 20-118 (121)
185 1ihg_A Cyclophilin 40; ppiase 98.6 7.6E-07 2.6E-11 74.8 12.7 90 219-308 272-363 (370)
186 1wao_1 Serine/threonine protei 98.6 1.8E-07 6.2E-12 81.5 8.9 119 23-142 8-134 (477)
187 3rkv_A Putative peptidylprolyl 98.6 9.1E-07 3.1E-11 64.9 11.3 102 149-252 11-130 (162)
188 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 7.5E-07 2.6E-11 77.2 11.0 132 52-204 268-405 (457)
189 3k9i_A BH0479 protein; putativ 98.5 5.1E-07 1.7E-11 62.3 7.8 81 163-245 4-86 (117)
190 3n71_A Histone lysine methyltr 98.5 9.9E-07 3.4E-11 76.6 11.3 125 193-317 318-466 (490)
191 2if4_A ATFKBP42; FKBP-like, al 98.5 5.8E-07 2E-11 74.7 9.3 140 53-211 180-326 (338)
192 1dce_A Protein (RAB geranylger 98.4 1.5E-05 5.2E-10 70.7 17.8 167 135-304 46-244 (567)
193 2l6j_A TPR repeat-containing p 98.4 2.7E-07 9.2E-12 62.8 4.7 93 219-311 3-103 (111)
194 1ihg_A Cyclophilin 40; ppiase 98.4 2.3E-06 7.8E-11 71.9 11.2 117 22-139 224-362 (370)
195 3ma5_A Tetratricopeptide repea 98.3 3.4E-06 1.2E-10 56.2 8.4 64 251-314 6-69 (100)
196 2hr2_A Hypothetical protein; a 98.3 6.3E-06 2.2E-10 59.3 9.5 58 120-177 59-130 (159)
197 1na3_A Designed protein CTPR2; 98.3 9.6E-06 3.3E-10 52.6 9.8 81 220-300 9-91 (91)
198 1zu2_A Mitochondrial import re 98.3 2.5E-06 8.4E-11 61.3 7.0 96 196-315 14-120 (158)
199 3n71_A Histone lysine methyltr 98.2 3.6E-06 1.2E-10 73.1 8.6 95 118-212 351-463 (490)
200 1dce_A Protein (RAB geranylger 98.2 8.9E-05 3E-09 65.9 17.4 167 68-238 45-244 (567)
201 2kat_A Uncharacterized protein 98.2 7.5E-06 2.6E-10 56.0 8.4 81 202-284 3-85 (115)
202 2kat_A Uncharacterized protein 98.1 3.2E-05 1.1E-09 52.8 10.6 77 3-80 2-81 (115)
203 1klx_A Cysteine rich protein B 98.1 7E-05 2.4E-09 53.1 11.9 108 164-280 10-125 (138)
204 2l6j_A TPR repeat-containing p 98.1 1.8E-05 6.1E-10 53.5 8.3 67 251-317 3-69 (111)
205 3bee_A Putative YFRE protein; 98.1 2.6E-05 8.9E-10 51.0 8.5 69 250-318 4-75 (93)
206 1klx_A Cysteine rich protein B 98.1 4.5E-05 1.5E-09 54.1 10.3 108 2-114 11-128 (138)
207 1zu2_A Mitochondrial import re 98.0 1.4E-05 4.7E-10 57.5 6.5 94 95-191 14-131 (158)
208 3ma5_A Tetratricopeptide repea 98.0 5.8E-05 2E-09 50.1 8.8 64 148-212 6-69 (100)
209 1na3_A Designed protein CTPR2; 98.0 5.7E-05 2E-09 48.8 8.6 74 55-129 12-88 (91)
210 2kc7_A BFR218_protein; tetratr 97.8 4.5E-05 1.5E-09 50.4 5.8 64 226-289 6-72 (99)
211 3qww_A SET and MYND domain-con 97.7 0.00023 8E-09 60.7 10.7 91 197-287 311-422 (433)
212 3qww_A SET and MYND domain-con 97.7 8.6E-05 3E-09 63.4 7.7 83 232-314 310-410 (433)
213 2kc7_A BFR218_protein; tetratr 97.6 0.00016 5.6E-09 47.6 6.8 61 258-318 6-67 (99)
214 3qwp_A SET and MYND domain-con 97.6 0.00023 7.8E-09 60.8 9.2 60 221-280 330-399 (429)
215 3qwp_A SET and MYND domain-con 97.6 0.0009 3.1E-08 57.2 12.8 88 227-314 294-399 (429)
216 3ly7_A Transcriptional activat 97.5 0.0073 2.5E-07 49.8 16.4 68 217-284 274-342 (372)
217 1wy6_A Hypothetical protein ST 97.5 0.01 3.5E-07 40.8 14.7 141 159-318 17-157 (172)
218 3ly7_A Transcriptional activat 97.5 0.0097 3.3E-07 49.1 16.5 62 148-211 276-337 (372)
219 3mkq_B Coatomer subunit alpha; 97.4 0.019 6.4E-07 41.9 15.8 130 28-175 12-141 (177)
220 3mkq_A Coatomer beta'-subunit; 97.4 0.0041 1.4E-07 57.9 14.7 98 129-247 610-708 (814)
221 3mkq_A Coatomer beta'-subunit; 97.3 0.0082 2.8E-07 55.8 16.6 100 30-145 608-708 (814)
222 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0025 8.7E-08 42.4 9.6 75 218-292 3-86 (104)
223 3mkq_B Coatomer subunit alpha; 97.2 0.022 7.4E-07 41.5 14.1 129 126-278 13-141 (177)
224 1pc2_A Mitochondria fission pr 97.2 0.0032 1.1E-07 44.7 9.3 88 199-288 13-107 (152)
225 3lvg_A Clathrin heavy chain 1; 97.1 2.1E-05 7.1E-10 66.3 -2.9 235 20-272 53-324 (624)
226 3u64_A Protein TP_0956; tetrat 97.1 0.0025 8.5E-08 50.4 8.8 53 266-318 218-272 (301)
227 3bee_A Putative YFRE protein; 97.1 0.011 3.6E-07 38.4 10.0 68 217-284 3-75 (93)
228 3lvg_A Clathrin heavy chain 1; 96.9 1.3E-07 4.4E-12 79.3 -17.8 241 51-312 53-317 (624)
229 1pc2_A Mitochondria fission pr 96.8 0.0054 1.9E-07 43.5 7.4 82 236-317 14-102 (152)
230 3u64_A Protein TP_0956; tetrat 96.7 0.037 1.3E-06 43.9 11.9 142 98-245 102-265 (301)
231 2v5f_A Prolyl 4-hydroxylase su 96.6 0.012 4.2E-07 39.0 8.1 66 251-316 4-76 (104)
232 4gns_B Protein CSD3, chitin bi 96.3 0.056 1.9E-06 49.3 12.5 123 188-313 252-398 (754)
233 1nzn_A CGI-135 protein, fissio 96.3 0.15 5.1E-06 34.8 11.5 92 196-289 13-111 (126)
234 1qsa_A Protein (soluble lytic 96.0 0.81 2.8E-05 40.9 24.1 113 164-280 229-347 (618)
235 1wy6_A Hypothetical protein ST 95.7 0.29 9.8E-06 33.8 12.5 61 151-212 93-153 (172)
236 3ffl_A Anaphase-promoting comp 95.6 0.26 9E-06 35.3 10.9 130 15-157 12-163 (167)
237 4h7y_A Dual specificity protei 95.6 0.12 4.2E-06 36.3 8.7 109 183-294 12-136 (161)
238 3ffl_A Anaphase-promoting comp 95.5 0.2 7E-06 35.9 10.0 113 122-248 24-150 (167)
239 4fhn_B Nucleoporin NUP120; pro 95.5 0.31 1.1E-05 47.3 14.4 157 26-199 817-986 (1139)
240 2ff4_A Probable regulatory pro 95.4 0.047 1.6E-06 45.9 7.6 67 256-322 175-246 (388)
241 4gns_B Protein CSD3, chitin bi 95.4 0.28 9.4E-06 44.8 12.8 120 25-145 252-398 (754)
242 1nzn_A CGI-135 protein, fissio 95.2 0.11 3.8E-06 35.4 7.6 83 235-317 16-105 (126)
243 4h7y_A Dual specificity protei 94.5 0.81 2.8E-05 32.2 11.7 93 51-144 12-120 (161)
244 3lpz_A GET4 (YOR164C homolog); 94.5 1.6 5.4E-05 35.5 19.6 170 119-315 36-216 (336)
245 4b4t_P 26S proteasome regulato 94.3 1.4 4.7E-05 37.7 14.0 181 132-314 30-246 (445)
246 4ady_A RPN2, 26S proteasome re 94.3 3.6 0.00012 38.6 18.9 246 29-279 382-656 (963)
247 4ady_A RPN2, 26S proteasome re 94.1 3.9 0.00013 38.4 18.5 285 23-313 341-656 (963)
248 4b4t_P 26S proteasome regulato 93.9 2.8 9.4E-05 35.9 16.4 181 65-246 29-244 (445)
249 4fhn_B Nucleoporin NUP120; pro 93.7 5.6 0.00019 38.7 22.6 143 89-239 818-990 (1139)
250 2wpv_A GET4, UPF0363 protein Y 93.6 2.3 8E-05 34.2 18.4 171 119-315 34-217 (312)
251 2wpv_A GET4, UPF0363 protein Y 93.4 2.6 8.8E-05 34.0 19.8 26 117-142 133-158 (312)
252 3o48_A Mitochondria fission 1 93.4 0.96 3.3E-05 31.0 8.9 72 217-288 37-114 (134)
253 3ltm_A Alpha-REP4; protein eng 93.2 1.9 6.7E-05 32.2 18.5 180 42-234 23-202 (211)
254 2uwj_G Type III export protein 93.2 1.1 3.6E-05 28.9 8.9 73 3-79 23-95 (115)
255 2p58_C Putative type III secre 93.0 1.1 3.9E-05 28.8 9.6 72 3-78 24-95 (116)
256 1y8m_A FIS1; mitochondria, unk 92.6 1.8 6.2E-05 30.1 11.3 72 217-288 36-113 (144)
257 2ff4_A Probable regulatory pro 92.5 0.86 2.9E-05 38.2 9.7 62 190-253 177-246 (388)
258 3txn_A 26S proteasome regulato 92.3 4.4 0.00015 33.9 18.7 162 84-245 20-206 (394)
259 1y8m_A FIS1; mitochondria, unk 91.8 2.3 8E-05 29.6 9.7 71 247-317 34-108 (144)
260 4b4t_R RPN7, 26S proteasome re 91.1 3.9 0.00013 34.8 12.3 96 119-214 132-238 (429)
261 1v54_E Cytochrome C oxidase po 91.0 2.1 7.3E-05 27.7 8.9 74 164-248 25-98 (109)
262 1v54_E Cytochrome C oxidase po 90.7 1.6 5.5E-05 28.2 7.0 53 39-91 28-87 (109)
263 3o48_A Mitochondria fission 1 90.6 2.1 7.3E-05 29.3 8.1 79 239-317 26-109 (134)
264 3ltm_A Alpha-REP4; protein eng 90.5 4.2 0.00014 30.3 19.1 170 81-264 31-200 (211)
265 4b4t_R RPN7, 26S proteasome re 89.2 4.4 0.00015 34.4 11.1 94 85-178 133-237 (429)
266 3txn_A 26S proteasome regulato 88.7 9.7 0.00033 31.9 30.8 277 22-317 20-345 (394)
267 1zbp_A Hypothetical protein VP 88.6 1.9 6.5E-05 33.7 7.5 58 228-285 5-64 (273)
268 1qsa_A Protein (soluble lytic 88.4 14 0.00046 33.2 23.0 299 3-320 137-484 (618)
269 2y69_E Cytochrome C oxidase su 88.3 4.6 0.00016 27.7 8.9 75 164-249 68-142 (152)
270 3esl_A Checkpoint serine/threo 88.3 6.1 0.00021 29.4 9.6 29 252-280 115-143 (202)
271 2uwj_G Type III export protein 88.2 3.7 0.00013 26.5 9.7 86 97-187 20-105 (115)
272 2p58_C Putative type III secre 87.9 3.9 0.00013 26.4 9.7 79 97-179 21-99 (116)
273 3ltj_A Alpharep-4; protein eng 87.3 7.1 0.00024 28.7 18.8 49 116-164 88-136 (201)
274 4b4t_S RPN3, 26S proteasome re 86.7 15 0.00052 31.9 15.3 181 118-318 231-432 (523)
275 1zbp_A Hypothetical protein VP 85.9 11 0.00037 29.5 11.3 53 158-211 6-58 (273)
276 4gq2_M Nucleoporin NUP120; bet 85.7 9.2 0.00032 36.4 11.9 104 190-299 816-949 (950)
277 2y69_E Cytochrome C oxidase su 85.4 4.7 0.00016 27.7 7.0 71 22-92 52-131 (152)
278 3ltj_A Alpharep-4; protein eng 84.1 10 0.00036 27.8 19.4 155 18-177 25-179 (201)
279 4a1g_A Mitotic checkpoint seri 79.8 6.3 0.00022 27.8 6.3 55 39-93 83-142 (152)
280 4a1g_A Mitotic checkpoint seri 78.2 15 0.00052 25.8 9.4 49 271-319 84-134 (152)
281 4b4t_S RPN3, 26S proteasome re 77.9 15 0.0005 32.0 9.2 63 52-114 231-301 (523)
282 3lpz_A GET4 (YOR164C homolog); 77.4 28 0.00094 28.3 24.3 165 22-212 36-215 (336)
283 2d2s_A Exocyst complex compone 76.3 24 0.00081 27.0 10.1 82 58-142 24-115 (235)
284 1wdy_A 2-5A-dependent ribonucl 73.7 29 0.00098 26.7 10.4 21 27-47 8-28 (285)
285 3esl_A Checkpoint serine/threo 73.5 25 0.00087 26.1 10.5 67 151-219 82-149 (202)
286 2wvi_A Mitotic checkpoint seri 73.3 23 0.00077 25.4 8.7 30 251-280 95-124 (164)
287 1wdy_A 2-5A-dependent ribonucl 73.1 30 0.001 26.7 10.8 42 6-47 18-62 (285)
288 2wvi_A Mitotic checkpoint seri 72.9 13 0.00043 26.7 6.4 57 38-94 77-138 (164)
289 4gq2_M Nucleoporin NUP120; bet 71.8 30 0.001 32.9 10.6 53 27-80 816-868 (950)
290 2d2s_A Exocyst complex compone 71.5 22 0.00076 27.2 8.0 86 155-244 24-115 (235)
291 4aez_C MAD3, mitotic spindle c 70.5 20 0.00068 27.1 7.3 30 251-280 149-178 (223)
292 4aez_C MAD3, mitotic spindle c 67.6 13 0.00045 28.1 5.8 57 38-94 131-192 (223)
293 2ion_A PDCD4, programmed cell 67.2 30 0.001 24.3 7.8 62 121-182 12-78 (152)
294 2ion_A PDCD4, programmed cell 66.5 31 0.0011 24.3 8.5 71 24-94 12-87 (152)
295 1oyz_A Hypothetical protein YI 66.1 44 0.0015 25.9 23.1 181 48-237 33-223 (280)
296 3bu8_A Telomeric repeat-bindin 62.8 43 0.0015 25.1 7.5 47 200-246 88-140 (235)
297 2nsz_A Programmed cell death p 60.5 37 0.0013 23.1 9.3 62 121-182 10-76 (129)
298 2fe3_A Peroxide operon regulat 59.9 38 0.0013 23.5 6.8 63 173-237 11-73 (145)
299 3re2_A Predicted protein; meni 57.1 81 0.0028 25.9 8.7 30 51-80 295-324 (472)
300 3kea_A K1L; tropism, ANK repea 56.7 68 0.0023 25.0 10.3 20 28-47 35-54 (285)
301 2nsz_A Programmed cell death p 54.5 47 0.0016 22.5 9.9 71 24-94 10-85 (129)
302 1wgl_A TOLL-interacting protei 51.9 13 0.00044 21.3 2.6 46 273-320 11-57 (59)
303 2xig_A Ferric uptake regulatio 50.4 61 0.0021 22.6 7.3 63 173-237 16-78 (150)
304 1n11_A Ankyrin; clathrin, BAND 49.9 81 0.0028 26.3 8.7 41 7-47 28-70 (437)
305 2b7e_A PRE-mRNA processing pro 49.4 20 0.00068 20.5 3.1 36 2-37 2-38 (59)
306 3ygs_P Procaspase 9; apoptosis 48.8 33 0.0011 21.9 4.6 38 35-72 51-88 (97)
307 4ets_A Ferric uptake regulatio 48.5 47 0.0016 23.6 5.8 70 166-237 14-86 (162)
308 3bqo_A Telomeric repeat-bindin 47.9 82 0.0028 23.3 6.9 17 229-245 126-142 (211)
309 4ets_A Ferric uptake regulatio 46.3 76 0.0026 22.5 7.3 50 85-134 34-85 (162)
310 3kea_A K1L; tropism, ANK repea 45.3 1.1E+02 0.0036 23.9 8.9 22 124-145 65-86 (285)
311 3u84_A Menin; MLL, JUND, ledgf 45.1 1.4E+02 0.0048 25.2 9.5 30 51-80 317-346 (550)
312 1oai_A Nuclear RNA export fact 44.9 16 0.00055 20.9 2.3 21 1-21 35-56 (59)
313 2ijq_A Hypothetical protein; s 44.8 82 0.0028 22.4 8.0 52 161-212 44-103 (161)
314 1ya0_A SMG-7 transcript varian 44.3 84 0.0029 27.3 7.7 39 268-306 168-206 (497)
315 1n11_A Ankyrin; clathrin, BAND 44.2 1.4E+02 0.0047 24.9 11.4 135 6-145 60-203 (437)
316 3bqo_A Telomeric repeat-bindin 43.8 95 0.0033 23.0 6.6 71 236-306 94-171 (211)
317 4gq4_A Menin; tumor suppressor 42.5 1.5E+02 0.0052 24.9 9.9 30 51-80 302-331 (489)
318 3bu8_A Telomeric repeat-bindin 42.2 1.1E+02 0.0037 23.0 7.5 21 191-211 121-141 (235)
319 3ygs_P Procaspase 9; apoptosis 42.1 35 0.0012 21.7 3.9 37 132-168 51-87 (97)
320 3eu9_A Huntingtin-interacting 41.8 56 0.0019 24.2 5.9 22 124-145 45-66 (240)
321 2o03_A Probable zinc uptake re 41.1 56 0.0019 22.1 5.1 37 161-197 22-58 (131)
322 3mwm_A ZUR, putative metal upt 40.7 48 0.0016 22.8 4.7 43 192-235 21-63 (139)
323 2zu6_B Programmed cell death p 40.1 1.4E+02 0.0049 23.8 8.5 27 24-50 6-32 (307)
324 2p1h_A APAF-1, apoptotic prote 39.0 70 0.0024 20.0 6.6 60 102-165 24-83 (94)
325 3mwm_A ZUR, putative metal upt 38.3 53 0.0018 22.5 4.7 47 88-134 18-64 (139)
326 2o03_A Probable zinc uptake re 37.8 60 0.002 21.9 4.8 47 88-134 15-61 (131)
327 3eyy_A Putative iron uptake re 37.7 69 0.0024 22.1 5.2 62 173-237 8-69 (145)
328 3ph0_C ASCG; type III secretio 37.3 56 0.0019 18.4 3.7 39 34-72 19-60 (61)
329 2qx5_A Nucleoporin NIC96; mRNA 37.3 2.4E+02 0.0081 25.6 14.4 18 90-107 301-318 (661)
330 3eyy_A Putative iron uptake re 37.1 1E+02 0.0035 21.3 6.6 53 212-266 11-66 (145)
331 2yru_A Steroid receptor RNA ac 36.4 61 0.0021 21.6 4.4 19 62-80 71-89 (118)
332 2w57_A Ferric uptake regulatio 35.4 1.1E+02 0.0038 21.2 7.2 63 173-237 6-69 (150)
333 1mzb_A Ferric uptake regulatio 35.4 1E+02 0.0035 20.9 6.5 62 174-237 8-70 (136)
334 2w57_A Ferric uptake regulatio 35.1 83 0.0028 21.9 5.3 48 153-200 20-68 (150)
335 2xig_A Ferric uptake regulatio 34.8 1.1E+02 0.0039 21.2 7.6 55 212-267 19-76 (150)
336 1mzb_A Ferric uptake regulatio 34.6 1.1E+02 0.0037 20.8 7.0 54 212-266 10-67 (136)
337 1zl8_A LIN-7; heterodimer, alp 34.6 58 0.002 17.7 3.8 43 2-46 9-51 (53)
338 3hra_A Ankyrin repeat family p 34.4 1.2E+02 0.0043 21.5 7.6 50 27-77 42-94 (201)
339 1oyz_A Hypothetical protein YI 34.3 1.6E+02 0.0054 22.6 24.9 188 18-212 34-233 (280)
340 2r9g_A AAA ATPase, central reg 33.7 1.4E+02 0.0049 22.1 10.1 59 160-220 25-88 (204)
341 2fe3_A Peroxide operon regulat 32.5 1.2E+02 0.0041 20.8 8.1 55 212-267 14-71 (145)
342 1ug3_A EIF4GI, eukaryotic prot 32.3 2E+02 0.0069 23.3 9.7 89 24-112 14-114 (339)
343 3hra_A Ankyrin repeat family p 31.9 1.2E+02 0.0043 21.5 6.3 19 127-145 11-29 (201)
344 2ijq_A Hypothetical protein; s 31.6 1.4E+02 0.0047 21.2 6.9 56 24-80 36-103 (161)
345 4b4t_O 26S proteasome regulato 29.2 2.5E+02 0.0085 23.3 8.2 21 124-144 133-153 (393)
346 2zu6_B Programmed cell death p 28.8 2.2E+02 0.0076 22.7 9.8 69 25-93 170-243 (307)
347 2yru_A Steroid receptor RNA ac 28.8 87 0.003 20.9 4.2 42 171-212 48-89 (118)
348 3ljn_A Hypothetical protein; a 28.0 1.9E+02 0.0064 23.3 7.2 17 229-245 179-195 (364)
349 2qq8_A TBC1 domain family memb 27.5 2.2E+02 0.0074 23.0 7.3 43 171-213 215-257 (334)
350 3ctd_A Putative ATPase, AAA fa 27.4 1.9E+02 0.0067 21.6 9.2 46 154-199 37-85 (213)
351 1bpo_A Protein (clathrin); cla 27.1 3E+02 0.01 23.7 9.4 100 9-108 349-454 (494)
352 2cfu_A SDSA1; SDS-hydrolase, l 26.8 1.6E+02 0.0053 26.7 6.8 43 259-301 456-498 (658)
353 3ljn_A Hypothetical protein; a 26.4 2.5E+02 0.0085 22.5 11.1 216 20-245 17-266 (364)
354 2crb_A Nuclear receptor bindin 25.8 1.2E+02 0.004 19.2 4.0 20 258-277 21-40 (97)
355 3kae_A CDC27, possible protein 25.7 1.9E+02 0.0066 21.0 17.1 82 128-211 43-141 (242)
356 2f6m_A Suppressor protein STP2 24.9 1.1E+02 0.0038 17.8 5.2 46 85-131 4-49 (65)
357 2cos_A Serine/threonine protei 22.9 1.1E+02 0.0037 17.0 3.7 42 102-148 9-52 (54)
358 1ya0_A SMG-7 transcript varian 22.3 3.8E+02 0.013 23.2 8.1 63 97-160 166-231 (497)
359 3bge_A Predicted ATPase; struc 21.7 2.5E+02 0.0085 20.8 8.9 45 155-199 10-57 (201)
360 2fu4_A Ferric uptake regulatio 21.4 1.4E+02 0.0048 17.8 7.1 60 174-235 7-67 (83)
361 3eu9_A Huntingtin-interacting 21.3 2.4E+02 0.0083 20.5 6.6 193 6-209 22-232 (240)
362 1ug3_A EIF4GI, eukaryotic prot 21.3 3.3E+02 0.011 22.0 10.7 26 122-147 15-40 (339)
363 3f3f_C Nucleoporin NUP85; stru 21.0 2E+02 0.007 25.3 6.1 67 101-168 499-568 (570)
364 1rw2_A ATP-dependent DNA helic 20.7 2.2E+02 0.0075 19.9 5.2 49 66-114 72-125 (152)
365 4b4t_O 26S proteasome regulato 20.6 3.6E+02 0.012 22.3 8.5 22 224-245 131-152 (393)
366 1q2z_A ATP-dependent DNA helic 20.4 1.8E+02 0.0061 19.3 4.6 48 67-114 42-94 (120)
367 2p22_A Suppressor protein STP2 20.2 2.3E+02 0.0077 20.5 5.2 53 81-134 109-161 (174)
368 2jp7_A MRNA export factor MEX6 20.2 40 0.0014 19.1 1.1 20 1-21 34-53 (57)
369 2keb_A DNA polymerase subunit 20.0 1.8E+02 0.0063 18.6 7.5 29 168-196 28-56 (101)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.1e-33 Score=249.73 Aligned_cols=321 Identities=11% Similarity=0.014 Sum_probs=281.1
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHH--------------------------------------HHHHHHhcCChHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESS--------------------------------------LVDMYGKCGLVDESHR 42 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------------l~~~~~~~~~~~~A~~ 42 (337)
++++|.++|+.|.+.+ +.+...+.. ++..|.+.|++++|.+
T Consensus 215 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 215 NFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 4678999999999875 223333332 3556678899999999
Q ss_pred HHHHccc--CChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC
Q 037592 43 VFDKMLK--KNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117 (337)
Q Consensus 43 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 117 (337)
+|+++.. ++..+|+.++.+|.+.|++++|+++|+++.+ .+..++..++.++.+.|++++|..+++++.+..+ .+
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 372 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EK 372 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TS
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-cc
Confidence 9999966 7899999999999999999999999999987 4677899999999999999999999999997654 67
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8999999999999999999999999886 4568899999999999999999999999999864 34778899999999
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-------cCCCc--hhHHHHHHHHHhcC
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-------DCRHD--SSLWEVLLGACTTF 265 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~ 265 (337)
.+.|++++|.++|+++++.. +.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 99999999999999997643 557899999999999999999999999975 44677 67899999999999
Q ss_pred CChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 266 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
|++++|++.++++.+..|+++.+|..++.+|.+.|++++|.+.|+++.+.. |+....|..+
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l 590 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMASDLL 590 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHHHHH
Confidence 999999999999999999989999999999999999999999999999854 3333444433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-31 Score=242.02 Aligned_cols=310 Identities=13% Similarity=0.013 Sum_probs=204.0
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc--ccCChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALLQGYCQTGDFESVIRIFREM 78 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (337)
++++|..+|+.+.+. .|+..++..++.+|.+.|++++|..+|+.+ ..++..+++.++.+|.+.|++++|+++|+++
T Consensus 99 ~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 176 (597)
T 2xpi_A 99 QYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET 176 (597)
T ss_dssp CHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS
T ss_pred CchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 356677777777754 466677777777777777777777777777 4556777777777777777777777777743
Q ss_pred hhc-------------------CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHH---------------
Q 037592 79 EEI-------------------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL--------------- 124 (337)
Q Consensus 79 ~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------- 124 (337)
... +..+|..++.+|.+.|++++|.++|+++++.++ .+...+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~ 255 (597)
T 2xpi_A 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLV 255 (597)
T ss_dssp CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHH
Confidence 321 245677777777777777777777777776543 222222211
Q ss_pred -----------------------HHHHHhcCCHHHHHHHHhcCCC--CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC
Q 037592 125 -----------------------VDLYAKCGCVDFAHQIFLQMPV--RNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179 (337)
Q Consensus 125 -----------------------~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 179 (337)
+..|.+.|++++|.++|+++.. ++..+|+.++.+|.+.|++++|..+|+++.+.+
T Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 335 (597)
T 2xpi_A 256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335 (597)
T ss_dssp HHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC
Confidence 2333445555566666655553 455555555555555666666655555555432
Q ss_pred C---------------------------------CCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHH
Q 037592 180 T---------------------------------KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226 (337)
Q Consensus 180 ~---------------------------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (337)
. +.+..++..++..|.+.|++++|.++|+++++.. +.+..+|+.+
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l 413 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGF 413 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 1 2345566666677777777777777777775431 3446677777
Q ss_pred HHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhh
Q 037592 227 VDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWND 304 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 304 (337)
+.+|.+.|++++|.++|+++ . .+++..+|..++.+|.+.|++++|+++|+++.+..|+++.+|..++.+|.+.|++++
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 77777777777777777764 2 233566777777777777777777777777777777777777777777777777778
Q ss_pred HHHHHHHHHHh
Q 037592 305 AFKIRTLMKYS 315 (337)
Q Consensus 305 A~~~~~~m~~~ 315 (337)
|.++|+++.+.
T Consensus 494 A~~~~~~~~~~ 504 (597)
T 2xpi_A 494 AINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 87777777765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=9.6e-29 Score=211.17 Aligned_cols=307 Identities=16% Similarity=0.113 Sum_probs=203.8
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
++|...++..++.. +.+..+|..+...+.+.|++++|+..|+++. .| +..+|..++.++...|++++|++.|+++.
T Consensus 50 ~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 50 DRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444432 3344555555555555666666666555552 22 33445555555666666666666665555
Q ss_pred h--cCcc-cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHH
Q 037592 80 E--IDLF-SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWN 153 (337)
Q Consensus 80 ~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 153 (337)
+ |+.. .+..+...+...|++++|...|+++++..+ .+..++..+..++.+.|++++|+..|+++. +.+...|.
T Consensus 129 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 207 (388)
T 1w3b_A 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 5 3332 344445555556666666666666665533 345556666666666666666666666654 22345566
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037592 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233 (337)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (337)
.+...+...|++++|...|++..+... .+..++..+...+...|++++|...++++++.. +.++.++..++..+.+.
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHc
Confidence 666666666677777777666665421 245667777788888888888888888886532 34567788888888888
Q ss_pred CChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 234 GLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 234 g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
|++++|.+.|+++ . .+++..++..+...+.+.|++++|+..++++.+..|++..++..++.++.+.|++++|...|++
T Consensus 285 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888874 2 3456677888888888889999999999988888888888888888888889999999999888
Q ss_pred HHH
Q 037592 312 MKY 314 (337)
Q Consensus 312 m~~ 314 (337)
+.+
T Consensus 365 a~~ 367 (388)
T 1w3b_A 365 AIR 367 (388)
T ss_dssp HHT
T ss_pred HHh
Confidence 876
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.3e-31 Score=229.85 Aligned_cols=206 Identities=15% Similarity=0.168 Sum_probs=157.0
Q ss_pred hHHHHHHHHhcCCCCch-HhHHHHHHHHHhcCChHHHHHHHHHc----ccCChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 5 GKEVHAKVITLGLCGNV-VVESSLVDMYGKCGLVDESHRVFDKM----LKKNSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 5 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
+..+.+.+.+.+..+++ ..++.+|++|++.|++++|.++|++| ..||..+||+||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 34445555555544333 34566666666666666666666666 455666666666666665543321
Q ss_pred hcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC----CCcHHhHHHH
Q 037592 80 EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP----VRNLITWNSM 155 (337)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l 155 (337)
...+.+++|.++|++|...|+.||..+|++++.+|++.|++++|.++|++|. .||..+|+++
T Consensus 81 --------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 81 --------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred --------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 1345577888999999999999999999999999999999999999999987 6899999999
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (337)
|.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|+.++|.+++++| ++.+..|+..||+.++..|+..
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M-r~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL-RDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH-HHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999 6669999999999999888753
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.6e-28 Score=206.40 Aligned_cols=310 Identities=14% Similarity=0.094 Sum_probs=272.3
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc---cCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML---KKNSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|.+.++.+.+.. +.+...+..+...+...|++++|...++... +.+..+|..++.++.+.|++++|++.|++
T Consensus 14 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5789999999998874 4456677778889999999999999998873 23677899999999999999999999999
Q ss_pred Hhh--cCc-ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHh
Q 037592 78 MEE--IDL-FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLIT 151 (337)
Q Consensus 78 ~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 151 (337)
+.+ |+. .+|..+..++...|++++|...++++++..+ .+...+..+...+...|++++|.+.|+++. +.+..+
T Consensus 93 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 171 (388)
T 1w3b_A 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 988 554 4688999999999999999999999998865 567778889999999999999999999887 345789
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...+++++... +.+..++..++.+|.
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHH
Confidence 99999999999999999999999998643 256678888899999999999999999997542 445788999999999
Q ss_pred hcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHH
Q 037592 232 RAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 232 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
..|++++|.+.|+++ ...| +..+|..+..++.+.|++++|+..++++.+..|+++.++..++.++.+.|++++|...+
T Consensus 249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999985 3444 46678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 037592 310 TLMKYS 315 (337)
Q Consensus 310 ~~m~~~ 315 (337)
+++.+.
T Consensus 329 ~~al~~ 334 (388)
T 1w3b_A 329 RKALEV 334 (388)
T ss_dssp HHHTTS
T ss_pred HHHHhc
Confidence 998764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.2e-30 Score=225.94 Aligned_cols=181 Identities=14% Similarity=0.072 Sum_probs=167.3
Q ss_pred ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC---------HHHHHHHHhcCC----CCcHH
Q 037592 84 FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC---------VDFAHQIFLQMP----VRNLI 150 (337)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~~----~~~~~ 150 (337)
..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+. +++|.++|++|. .||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777888888999999999999999999999999999999999987665 688999999997 78999
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (337)
+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|. ..|+.||..+|+.|+.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV-ESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999994 559999999999999999
Q ss_pred HhcCChHHHHHHHHHh---cCCCchhHHHHHHHHHhcC
Q 037592 231 GRAGLLEEAETLIENA---DCRHDSSLWEVLLGACTTF 265 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~ 265 (337)
++.|++++|.++|++| +..|+..||+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999987 6899999999999887653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=3.1e-26 Score=199.31 Aligned_cols=305 Identities=10% Similarity=0.030 Sum_probs=251.7
Q ss_pred HHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--
Q 037592 6 KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFREMEE-- 80 (337)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 80 (337)
...+....... +.+...+..++..+.+.|++++|+.+|+++.. .+..+|..++.++...|++++|+..|+++.+
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 34444555443 55678899999999999999999999999843 3678899999999999999999999999998
Q ss_pred c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCc---hhHHHH------------HHHHHhcCCHHHHHHHHhcC
Q 037592 81 I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV---IIESAL------------VDLYAKCGCVDFAHQIFLQM 144 (337)
Q Consensus 81 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~ 144 (337)
| +..++..+..++...|++++|...++++++..+ .+. ..+..+ ...+...|++++|+..|+++
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 355788899999999999999999999998654 334 555555 44589999999999999988
Q ss_pred C---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHH
Q 037592 145 P---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221 (337)
Q Consensus 145 ~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (337)
. +.+..++..++.+|...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.++... +.+..
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~ 246 (450)
T 2y4t_A 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKR 246 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHH
Confidence 6 4577889999999999999999999999998763 3467888899999999999999999999997542 33444
Q ss_pred HHHHH------------HHHHHhcCChHHHHHHHHHh-cCCCc-----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCC
Q 037592 222 HYNCM------------VDLLGRAGLLEEAETLIENA-DCRHD-----SSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283 (337)
Q Consensus 222 ~~~~l------------~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 283 (337)
.+..+ +..+...|++++|...|+++ ...|+ ...+..+..++.+.|++++|+..++++.+..|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 55444 78899999999999999975 33444 34677888999999999999999999999999
Q ss_pred CccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 284 DCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 284 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
+++.+|..++.+|...|++++|...++++.+.
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999874
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.6e-25 Score=193.45 Aligned_cols=305 Identities=10% Similarity=0.030 Sum_probs=257.3
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|..+|+.+++.. +.+..++..++.++...|++++|+..|+++.. | +..++..++.+|...|++++|.++|++
T Consensus 41 ~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 119 (450)
T 2y4t_A 41 QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 119 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4688999999999874 55788999999999999999999999999843 3 577899999999999999999999999
Q ss_pred Hhh--cCc----ccHHHH------------HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 78 MEE--IDL----FSFGIV------------LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 78 ~~~--~~~----~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
+.+ |+. ..+..+ ...+...|++++|...++++++..+ .+..++..++.+|.+.|++++|+.
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHH
Confidence 998 443 344444 4458899999999999999998765 678889999999999999999999
Q ss_pred HHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC-HhHHHHH------------HHHHhhcCchhhH
Q 037592 140 IFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD-HVSFIGV------------LSACSHMGLIDRG 203 (337)
Q Consensus 140 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l------------~~~~~~~~~~~~a 203 (337)
.|+++. +.+..+|..++..|...|++++|+..|+++.+. .|+ ...+..+ ...+...|++++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 276 (450)
T 2y4t_A 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276 (450)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999987 457889999999999999999999999999875 343 3334333 7788899999999
Q ss_pred HHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 204 RKHFASMTKEYRIKPK-----IEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
...++.+++. .|+ ...+..++.++.+.|++++|...++++ ... .+...|..+..+|...|++++|...++
T Consensus 277 ~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 277 TSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999764 344 457888999999999999999999985 333 467889999999999999999999999
Q ss_pred HHHhcCCCccchHHHHHHH------------HHHcC-----ChhhHHHHHHHH
Q 037592 277 KIMELKPDCHLSYVLLDNV------------YRAVG-----RWNDAFKIRTLM 312 (337)
Q Consensus 277 ~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m 312 (337)
++.++.|+++..+..+..+ |...| +.+++.+.|+++
T Consensus 354 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 354 TAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999999998888888844 44445 556667777763
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-23 Score=185.59 Aligned_cols=312 Identities=13% Similarity=-0.032 Sum_probs=210.0
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|...|+.+++.+ |+..+|..+..++.+.|++++|+..|+++. .| +..+|..++.++...|++++|+..|++
T Consensus 21 ~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 21 KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678999999999885 788889999999999999999999998873 33 567788888999999999999988888
Q ss_pred Hhh--cC-------------------------------------------------------------------------
Q 037592 78 MEE--ID------------------------------------------------------------------------- 82 (337)
Q Consensus 78 ~~~--~~------------------------------------------------------------------------- 82 (337)
+.. |+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 99 LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 765 21
Q ss_pred -------cccHHHHHHHHHh---hchhhhhHHHHHHHHH-----h--hC------CCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 83 -------LFSFGIVLRACAG---LAALRLGKEVHCQYIR-----R--SG------CKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 83 -------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
...+......+.. .|++++|...++++++ . .+ +.+..++..+...+...|++++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 1111222222222 5667777777766666 2 10 1224455556666666666666666
Q ss_pred HHhcCC------------------------------------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC
Q 037592 140 IFLQMP------------------------------------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183 (337)
Q Consensus 140 ~~~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 183 (337)
.|+++. +.+..++..+...|...|++++|...|+++.+.... +
T Consensus 259 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 337 (514)
T 2gw1_A 259 DIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-N 337 (514)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-C
T ss_pred HHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-h
Confidence 665543 123445555666666666666666666666654222 3
Q ss_pred HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c---CCCc----hhHH
Q 037592 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D---CRHD----SSLW 255 (337)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~----~~~~ 255 (337)
...+..+...+...|++++|...++.+++.. +.+..++..++..+...|++++|...++++ . ..++ ...+
T Consensus 338 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 4455566666667777777777777765432 334566777777777777777777777653 1 1122 2367
Q ss_pred HHHHHHHhc---CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 256 EVLLGACTT---FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 256 ~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
..+...+.. .|++++|...++++.+..|+++.++..++.+|...|++++|...|++..+...
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 777777777 78888888888888887887777778888888888888888888887776543
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=4.5e-23 Score=173.62 Aligned_cols=294 Identities=10% Similarity=0.030 Sum_probs=240.6
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRAC 93 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 93 (337)
|+..+..+...+...|++++|+..|+++.. .+...+..+..++...|++++|+..++++.+ | +...+..+..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 456778888999999999999999998832 3577889999999999999999999999988 4 445788888999
Q ss_pred HhhchhhhhHHHHHHHHHhhCC--CCchhHHHH------------HHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGC--KDVIIESAL------------VDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMI 156 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 156 (337)
...|++++|...++++++..+. .+...+..+ ...+...|++++|+..++++. +.+...+..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999876431 234444444 578899999999999999876 44678889999
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHH------------
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN------------ 224 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 224 (337)
..+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+++.. +.+...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999998863 3466788888899999999999999999997643 33333332
Q ss_pred HHHHHHHhcCChHHHHHHHHHh-cCCCch-----hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 225 CMVDLLGRAGLLEEAETLIENA-DCRHDS-----SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 225 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
.++..+.+.|++++|...+++. ...|+. ..+..+..++...|++++|+..++++.+..|+++.++..++.++..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3366788999999999999874 333332 2244566789999999999999999999999989999999999999
Q ss_pred cCChhhHHHHHHHHHHhC
Q 037592 299 VGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 299 ~g~~~~A~~~~~~m~~~~ 316 (337)
.|++++|...|++..+..
T Consensus 319 ~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 999999999999988754
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-23 Score=185.55 Aligned_cols=294 Identities=12% Similarity=-0.042 Sum_probs=249.2
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHc--ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHh
Q 037592 21 VVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAG 95 (337)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~ 95 (337)
...+..+...+.+.|++++|+..|+++ ..|+...|..++.++.+.|++++|++.++++.+ |+ ..++..+..++..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999 457888999999999999999999999999998 54 3578889999999
Q ss_pred hchhhhhHHHHHHHHHhhCCC-----------------------------------------------------------
Q 037592 96 LAALRLGKEVHCQYIRRSGCK----------------------------------------------------------- 116 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~----------------------------------------------------------- 116 (337)
.|++++|...|+++.+.++..
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 999999999999998765411
Q ss_pred -------------------CchhHHHHHHHHHh---cCCHHHHHHHHhcCCC----------------C-cHHhHHHHHH
Q 037592 117 -------------------DVIIESALVDLYAK---CGCVDFAHQIFLQMPV----------------R-NLITWNSMIS 157 (337)
Q Consensus 117 -------------------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l~~ 157 (337)
+...+..+...+.. .|++++|+..|+++.. | +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 13344445555554 8999999999987654 2 3457888999
Q ss_pred HHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 037592 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
.+...|++++|...|+++.+... +...+..+...+...|++++|...++.++.. .+.+..++..++..+...|+++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999998643 3778888889999999999999999999653 2456788999999999999999
Q ss_pred HHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 238 EAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 238 ~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
+|...+++. ... .+...+..+...+...|++++|+..++++.+..|+++.++..++.++...|++++|...++++.+.
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999974 333 356678888899999999999999999999999998999999999999999999999999998875
Q ss_pred CCc
Q 037592 316 GVK 318 (337)
Q Consensus 316 ~~~ 318 (337)
...
T Consensus 402 ~~~ 404 (514)
T 2gw1_A 402 ENK 404 (514)
T ss_dssp HHT
T ss_pred hhc
Confidence 433
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=1e-22 Score=171.49 Aligned_cols=295 Identities=9% Similarity=-0.021 Sum_probs=245.3
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|...|+.+++.. +.+..++..+...+...|++++|...|+++. .| +...|..+..++...|++++|...|++
T Consensus 18 ~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 96 (359)
T 3ieg_A 18 QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 96 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5789999999999875 4567889999999999999999999999984 33 677899999999999999999999999
Q ss_pred Hhh--c---Cc-ccHHHH------------HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 78 MEE--I---DL-FSFGIV------------LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 78 ~~~--~---~~-~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
+.+ | +. ..+..+ ...+...|++++|...++++++..+ .+..++..+..++...|++++|..
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~ 175 (359)
T 3ieg_A 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAIS 175 (359)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHH
Confidence 988 5 22 233333 5788899999999999999999865 678889999999999999999999
Q ss_pred HHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHH------------HHHHHHhhcCchhhHH
Q 037592 140 IFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI------------GVLSACSHMGLIDRGR 204 (337)
Q Consensus 140 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~~~~~~a~ 204 (337)
.++++. +.+..++..+...|...|++++|...|++..+.... +...+. .+...+.+.|++++|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 254 (359)
T 3ieg_A 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254 (359)
T ss_dssp HHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999876 446788999999999999999999999999885322 233222 2256688999999999
Q ss_pred HHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 205 KHFASMTKEYRIKPKI----EHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 205 ~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
..++.+++.. +.+. ..+..+..++...|++++|...+++. . .+.+...+..+...+...|++++|...++++
T Consensus 255 ~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 255 SKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999997653 2233 33556788999999999999999974 3 3336778889999999999999999999999
Q ss_pred HhcCCCccchHHHHHHHHHHcC
Q 037592 279 MELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 279 ~~~~p~~~~~~~~l~~~~~~~g 300 (337)
.+..|+++..+..+..+....+
T Consensus 333 ~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 333 QEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHH
Confidence 9999999888888877765543
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=7.6e-23 Score=181.89 Aligned_cols=312 Identities=11% Similarity=-0.006 Sum_probs=241.1
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|...|+.+++.. +.+..++..+..+|.+.|++++|++.|+++. .| +...+..+..++...|++++|+..|+.
T Consensus 40 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 118 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV 118 (537)
T ss_dssp CCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678999999999875 4577888889999999999999999999883 33 567788888888888888888887743
Q ss_pred H-------------------------------------------------------------------------------
Q 037592 78 M------------------------------------------------------------------------------- 78 (337)
Q Consensus 78 ~------------------------------------------------------------------------------- 78 (337)
+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (537)
T 3fp2_A 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD 198 (537)
T ss_dssp HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHH
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHH
Confidence 3
Q ss_pred ------------------------------hh--cCc--------ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCc
Q 037592 79 ------------------------------EE--IDL--------FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118 (337)
Q Consensus 79 ------------------------------~~--~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 118 (337)
.+ |+. .++..+...+...|++++|...++++++..+ +.
T Consensus 199 ~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~ 276 (537)
T 3fp2_A 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--TP 276 (537)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--Cc
Confidence 11 111 1244445566677778888888888887653 36
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHh
Q 037592 119 IIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 195 (337)
.++..+...+...|++++|...++++. +.+..++..+...|...|++++|...|+++.+.... +...+..+...+.
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 355 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 777778888888888888888888776 345778888888999999999999999998875322 4567777888888
Q ss_pred hcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-------chhHHHHHHHHHhcC--
Q 037592 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-------DSSLWEVLLGACTTF-- 265 (337)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-------~~~~~~~l~~~~~~~-- 265 (337)
..|++++|...++.+++.. +.+...+..+...+...|++++|...|++. ...| ....+......+...
T Consensus 356 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 433 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS 433 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987653 455778888899999999999999998874 1111 111233344556666
Q ss_pred --------CChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 266 --------RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 266 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
|++++|+..++++.+..|+++.++..++.+|...|++++|...|++..+....
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred ccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999998876543
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.2e-22 Score=169.25 Aligned_cols=283 Identities=11% Similarity=-0.001 Sum_probs=206.2
Q ss_pred CCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHH
Q 037592 17 LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVL 90 (337)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 90 (337)
.+.+...+..++..+...|++++|.++|+++.. | +...+..++.++...|++++|..+++++.+ | +...+..+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 355666777777888888888888888888732 2 455666777778888888888888888877 3 445677777
Q ss_pred HHHHhhc-hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHh
Q 037592 91 RACAGLA-ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGE 166 (337)
Q Consensus 91 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 166 (337)
..+...| ++++|...++++++..+ .+...+..+..++...|++++|+..++++. +.+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7788888 78888888888877654 456777778888888888888888887776 334566777778888888888
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCChHHH
Q 037592 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR-------IKPKIEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 239 (337)
+|...++++.+.. +.+...+..+...+...|++++|...++.+++... .+....++..++.+|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887753 23456677777778888888888888887765321 133456777788888888888888
Q ss_pred HHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH-HHcCC
Q 037592 240 ETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY-RAVGR 301 (337)
Q Consensus 240 ~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~ 301 (337)
...+++. . .+.+...+..+...+...|++++|...++++.+..|+++..+..+..++ ...|+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 8888763 2 2234566777777788888888888888888888888777777777777 34444
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=6e-22 Score=164.91 Aligned_cols=274 Identities=11% Similarity=0.022 Sum_probs=233.4
Q ss_pred cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHH
Q 037592 49 KKNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV 125 (337)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (337)
..+...+..++..+...|++++|+++|+++.+ | +...+..++.++...|++++|..+++++++..+ .+..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 34677788899999999999999999999988 3 445677788999999999999999999999865 6788899999
Q ss_pred HHHHhcC-CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchh
Q 037592 126 DLYAKCG-CVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201 (337)
Q Consensus 126 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 201 (337)
..+...| ++++|...|+++. +.+...|..+...+...|++++|...|+++.+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999876 345678999999999999999999999999886433 4556677888999999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc-----------CCCchhHHHHHHHHHhcCCChhH
Q 037592 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD-----------CRHDSSLWEVLLGACTTFRNAHV 270 (337)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~ 270 (337)
+|...++.+++. .+.+..++..++..+...|++++|...+++.- .+.....+..+..++...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999753 25567889999999999999999999998641 13345678899999999999999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 271 AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 271 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
|+..++++.+..|+++.++..++.++...|++++|...+++..+.. |+....|..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 310 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTML 310 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHH
Confidence 9999999999999999999999999999999999999999877643 4343344333
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=2.3e-22 Score=170.21 Aligned_cols=280 Identities=11% Similarity=-0.002 Sum_probs=223.8
Q ss_pred HHHhcCChHHHHH-HHHHccc--C-----ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhch
Q 037592 30 MYGKCGLVDESHR-VFDKMLK--K-----NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAA 98 (337)
Q Consensus 30 ~~~~~~~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 98 (337)
.+...|++++|+. .|++... | +...+..+...+...|++++|+.+|+++.+ | +..++..+..++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3445688999998 8887632 2 345688999999999999999999999998 3 44578888999999999
Q ss_pred hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CC-cHHhHHH---------------HHHHHH
Q 037592 99 LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VR-NLITWNS---------------MISGFA 160 (337)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~---------------l~~~~~ 160 (337)
+++|...++++++..+ .+..++..+..+|...|++++|+..++++. .| +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999999999875 678899999999999999999999999876 22 2222221 133334
Q ss_pred hCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 037592 161 QNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 161 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 239 (337)
..|++++|...|+++.+..... +..++..+...+...|++++|...+++++... +.+..++..++..+...|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999998864321 46788888999999999999999999997652 45678999999999999999999
Q ss_pred HHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc-----------cchHHHHHHHHHHcCChhhHH
Q 037592 240 ETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC-----------HLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 240 ~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 306 (337)
...|++. .. +.+...+..+..+|...|++++|...++++.+..|++ ..+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999974 33 3456778889999999999999999999999988876 689999999999999999999
Q ss_pred HHHHHH
Q 037592 307 KIRTLM 312 (337)
Q Consensus 307 ~~~~~m 312 (337)
.++++-
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 988643
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=3e-22 Score=169.40 Aligned_cols=258 Identities=10% Similarity=-0.059 Sum_probs=212.7
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
+...|..++..+.+.|++++|+++|+++.+ | +..++..+..++...|++++|...++++++..+ .+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 455689999999999999999999999988 4 456788899999999999999999999999865 668899999999
Q ss_pred HHhcCCHHHHHHHHhcCCC--Cc-----------HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-CCHhHHHHHHHH
Q 037592 128 YAKCGCVDFAHQIFLQMPV--RN-----------LITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-PDHVSFIGVLSA 193 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~ 193 (337)
|...|++++|+..|+++.. |+ ...+..+...+...|++++|..+|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999998872 22 123344588899999999999999999986432 157788889999
Q ss_pred HhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHH
Q 037592 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 271 (337)
+...|++++|...++++++.. +.+..++..++.+|...|++++|...|++. ...| +..++..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999997653 556889999999999999999999999974 3334 477888999999999999999
Q ss_pred HHHHHHHHhcCCC------------ccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 272 ERVAKKIMELKPD------------CHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 272 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
...++++.++.|+ +...|..+..++...|+.+.+..+.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999997766 367899999999999999988877654
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=6.6e-21 Score=169.37 Aligned_cols=293 Identities=12% Similarity=0.007 Sum_probs=237.0
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcc--c-CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKML--K-KNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRAC 93 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 93 (337)
....+..+...+.+.|++++|+..|++++ . .+..+|..++.+|.+.|++++|++.|+++.+ | +..++..+..++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 34667888999999999999999999983 3 3678899999999999999999999999998 4 345788889999
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCch------------------------------------------------------
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVI------------------------------------------------------ 119 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~------------------------------------------------------ 119 (337)
...|++++|...|+.+ ...+.+...
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999998633 221111100
Q ss_pred -------------hHHHHHHHHH--------hcCCHHHHHHHHhcCCC--Cc--------HHhHHHHHHHHHhCCCHhHH
Q 037592 120 -------------IESALVDLYA--------KCGCVDFAHQIFLQMPV--RN--------LITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 120 -------------~~~~l~~~~~--------~~g~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~~a 168 (337)
....+...+. ..|++++|..+++++.. |+ ..++..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 1111211111 12478889999888763 32 23567777888999999999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D 247 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 247 (337)
...|+++.+. .|+...+..+...+...|++++|...++.+++.. +.+..++..++..+...|++++|...+++. .
T Consensus 263 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 263 QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999985 4567788888899999999999999999997653 456888999999999999999999999974 2
Q ss_pred C-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 248 C-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 248 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
. +.+...+..+...+...|++++|...++++.+..|+++..+..++.++...|++++|...|+++.+...
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 2 334667888899999999999999999999999999999999999999999999999999999988653
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=3.5e-20 Score=151.40 Aligned_cols=271 Identities=11% Similarity=0.019 Sum_probs=217.0
Q ss_pred HHHHHhcCChHHHHHHHHHcccCC----hhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhH
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKKN----SVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGK 103 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 103 (337)
++.....|+++.|+..++.....+ ......+..+|...|+++.|+..++....|+..++..+...+...++.++|.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 455678899999999999875443 2345667899999999999998876643366667888888999999999999
Q ss_pred HHHHHHHHhhCCC-CchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCC
Q 037592 104 EVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182 (337)
Q Consensus 104 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 182 (337)
+.+++++..+..| +...+..+..++...|++++|++.+++ ..+...+..++..|.+.|++++|...|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 9999999876434 566777888999999999999999999 5678899999999999999999999999999863 5
Q ss_pred CHhHHH---HHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHH
Q 037592 183 DHVSFI---GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEV 257 (337)
Q Consensus 183 ~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~ 257 (337)
+..... .++..+...|++++|..+|+++++. .+.++..++.+..++.+.|++++|...|++. ... .++.++..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 543221 2234444569999999999999775 3678899999999999999999999999984 333 46778889
Q ss_pred HHHHHhcCCChhH-HHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHH
Q 037592 258 LLGACTTFRNAHV-AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKI 308 (337)
Q Consensus 258 l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (337)
++..+...|+.++ +.++++++.+..|+++.+. ....+.+.++++..-
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 9999999999876 6789999999999976433 344455555555443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=4.3e-21 Score=162.35 Aligned_cols=276 Identities=12% Similarity=0.013 Sum_probs=205.8
Q ss_pred hcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHH-HHHHHhh--c-----CcccHHHHHHHHHhhchhhhhHH
Q 037592 33 KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIR-IFREMEE--I-----DLFSFGIVLRACAGLAALRLGKE 104 (337)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~ 104 (337)
..+.++.+...|+.+...+.. ++.-.|++++|++ .|++... | +...+..+...+...|++++|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 85 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVL 85 (368)
T ss_dssp ----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHH
Confidence 334455555556655443322 3445588999998 8887766 2 35678899999999999999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC
Q 037592 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181 (337)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 181 (337)
.++++++..+ .+..++..+..++.+.|++++|+..|+++. +.+..++..+...|...|++++|...++++.+....
T Consensus 86 ~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 86 LFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp HHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999998865 678889999999999999999999999876 457789999999999999999999999999986432
Q ss_pred CCHhHHH-H--------------HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 182 PDHVSFI-G--------------VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 182 p~~~~~~-~--------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
. ...+. . .+..+...|++++|...++.+++.....++..++..++..|...|++++|...+++.
T Consensus 165 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 165 Y-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp T-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred c-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 22221 1 233344889999999999999765322225889999999999999999999999974
Q ss_pred -cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 247 -DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 247 -~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.. +.+...+..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|...|++..+...
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33 335678899999999999999999999999999999999999999999999999999999999987543
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=1.1e-20 Score=156.99 Aligned_cols=271 Identities=8% Similarity=-0.051 Sum_probs=182.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHh
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAG 95 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 95 (337)
..+..+...+...|++++|..+|+++.. .+...+..+..++...|++++|.+.++++.+ | +..++..+..++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3444555566666666666666666521 2344555556666666666666666666555 2 23344445555555
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHH-HH-HHHhCCCHhHHHHHHH
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM-IS-GFAQNGRGEEALRIFD 173 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~~~~~ 173 (337)
.|++++|...++++++..+ .+...+..+.... ++......+ .. .+...|++++|...++
T Consensus 102 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp TTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 5555555555555554432 1122221111000 011111112 22 3677889999999999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCc
Q 037592 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHD 251 (337)
Q Consensus 174 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~ 251 (337)
++.+... .+...+..+...+...|++++|...++.+++.. +.+..++..++..+...|++++|...+++. .. +.+
T Consensus 163 ~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 163 AALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 9888643 366778888889999999999999999987642 456788899999999999999999999874 32 335
Q ss_pred hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC------------ccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD------------CHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 252 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
...+..+...+...|++++|.+.++++.+..|+ ++..+..++.++...|++++|..++++..+
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677888889999999999999999999998888 788999999999999999999999875543
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=5.7e-21 Score=161.57 Aligned_cols=233 Identities=12% Similarity=-0.016 Sum_probs=197.1
Q ss_pred CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHH
Q 037592 82 DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISG 158 (337)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 158 (337)
+...+..+...+.+.|++++|...++++++..+ .+..++..+..+|.+.|++++|+..|+++. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 445689999999999999999999999999875 678899999999999999999999999887 4467899999999
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCH-----------hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDH-----------VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
|...|++++|+..|+++.+.. |+. ..+..+...+...|++++|...++++++.....++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998743 321 2223347788899999999999999987642222688999999
Q ss_pred HHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhH
Q 037592 228 DLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 305 (337)
..|...|++++|...|++. . .+.+..+|..+..+|...|++++|+..++++.+..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999984 2 3346778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 037592 306 FKIRTLMKYSGV 317 (337)
Q Consensus 306 ~~~~~~m~~~~~ 317 (337)
...|++..+...
T Consensus 301 ~~~~~~al~~~~ 312 (365)
T 4eqf_A 301 VSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999999987543
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=1.5e-21 Score=163.45 Aligned_cols=268 Identities=12% Similarity=0.042 Sum_probs=125.9
Q ss_pred HhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHH
Q 037592 32 GKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (337)
-+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3678899999999999554 59999999999999999999999765 6777999999999999999999998887777
Q ss_pred hhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 037592 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191 (337)
Q Consensus 112 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 191 (337)
. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.++..|...|++++|..+|..+ ..|..++
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHH
Confidence 4 35578889999999999999999988864 77789999999999999999999999977 4788999
Q ss_pred HHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHH
Q 037592 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 271 (337)
.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.+++|
T Consensus 156 ~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHHH
Confidence 9999999999999999887 26889999999999999999997776666655554 45688899999999999
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH-HhCCcc-----CCCCccee
Q 037592 272 ERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK-YSGVKK-----MPGKSWIE 327 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~-----~~~~~~~~ 327 (337)
+.+++..+.++|.....|..|..+|++- ++++.++.++... +-+++| ....-|.+
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9999999999999888899988888874 4555555554433 334544 44555543
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=7.4e-19 Score=153.75 Aligned_cols=322 Identities=11% Similarity=-0.032 Sum_probs=214.5
Q ss_pred CchhhHHHHHHHHhc-------CCCC-chHhHHHHHHHHHhcCChHHHHHHHHHccc-------C----ChhhHHHHHHH
Q 037592 1 RLKQGKEVHAKVITL-------GLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLK-------K----NSVSSSALLQG 61 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~ 61 (337)
++++|++.|++.++. ...| ...+|+.+..+|...|++++|...+++... + ...++..+..+
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence 457788888776552 1233 356799999999999999999999987721 1 24456666555
Q ss_pred HHc--CCChhHHHHHHHHHhh--cCcc-cHHHHHHHH---HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh---
Q 037592 62 YCQ--TGDFESVIRIFREMEE--IDLF-SFGIVLRAC---AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK--- 130 (337)
Q Consensus 62 ~~~--~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 130 (337)
+.. .+++++|++.|++..+ |+.. .+..+..++ ...++.++|++.+++.++..+ .+..++..+...+..
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~ 224 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMRE 224 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC-
T ss_pred HHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHh
Confidence 544 5679999999999988 5543 344444443 445667889999999998865 566667666655554
Q ss_pred -cCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc---------
Q 037592 131 -CGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM--------- 197 (337)
Q Consensus 131 -~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------- 197 (337)
.|++++|.+.+++.. +.+..++..+...|...|++++|...+++..+..+. +..++..+..+|...
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467788999998765 456778999999999999999999999999885322 445555555554322
Q ss_pred ----------CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCchhH----HHHHHH-H
Q 037592 198 ----------GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSSL----WEVLLG-A 261 (337)
Q Consensus 198 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~----~~~l~~-~ 261 (337)
+..+.|...++.+.+.. +.+..++..+...|...|++++|+..|++. ...|+... +..+.. .
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 33567888888886543 445567888999999999999999999974 34443322 222222 2
Q ss_pred HhcCCChhHHHHHHHHHHhc------------------------CCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 262 CTTFRNAHVAERVAKKIMEL------------------------KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
....|++++|+..|++++++ +|+++.+|..++.+|...|++++|++.|++..+.|.
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 45789999999988887654 567788999999999999999999999999999877
Q ss_pred ccCCCCcce
Q 037592 318 KKMPGKSWI 326 (337)
Q Consensus 318 ~~~~~~~~~ 326 (337)
......+|+
T Consensus 462 ~~p~a~~~~ 470 (472)
T 4g1t_A 462 LIPSASSWN 470 (472)
T ss_dssp ---------
T ss_pred CCCcHhhcC
Confidence 665666664
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=4.6e-20 Score=153.27 Aligned_cols=240 Identities=13% Similarity=0.018 Sum_probs=167.2
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|..+|+.+.+.. +.+..++..+...+...|++++|...|+++.. .+..++..+...+...|++++|++.+++
T Consensus 36 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 114 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4688999999999875 44778889999999999999999999999832 3677899999999999999999999999
Q ss_pred Hhh--cCcc-cHHHH--------------HH-HHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 78 MEE--IDLF-SFGIV--------------LR-ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 78 ~~~--~~~~-~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
+.+ |+.. .+..+ .. .+...|++++|...++++++..+ .+..++..+...+...|++++|..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp HHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHH
Confidence 988 4333 33333 22 36677888888888888877654 456667777777777777777777
Q ss_pred HHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCC
Q 037592 140 IFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216 (337)
Q Consensus 140 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (337)
.++++. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++.++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-- 270 (327)
T 3cv0_A 194 NLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-- 270 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--
Confidence 776655 2345566666666777777777777777666542 2244555566666666666666666666665432
Q ss_pred CC------------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 217 KP------------KIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 217 ~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
+. +..++..+..++...|++++|..++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11 245555566666666666666665543
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=1.3e-21 Score=163.80 Aligned_cols=275 Identities=13% Similarity=0.111 Sum_probs=136.1
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
+++|.++++.+ ++..+|+.|+.++.+.|++++|++.|.+. +|...|..++.++...|++++|+.+++..++
T Consensus 19 ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 19 LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 56677777776 33459999999999999999999999764 5777999999999999999999999988877
Q ss_pred -cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHH
Q 037592 81 -IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF 159 (337)
Q Consensus 81 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 159 (337)
+++.+.+.++.+|.+.|++.++.++++ .|+..+|..++..|...|++++|...|.++ ..|..++.++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L 158 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTL 158 (449)
T ss_dssp ------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHH
Confidence 677889999999999999999998874 267779999999999999999999999987 5899999999
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 239 (337)
.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ...+.-...++..|.+.|++++|
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHHHH
Confidence 9999999999999988 26789999999999999999996655432 23444455789999999999999
Q ss_pred HHHHHH-hcCC-CchhHHHHHHHHHhcC--CChhHHHHHHHHHHhcCC-----CccchHHHHHHHHHHcCChhhHHHH
Q 037592 240 ETLIEN-ADCR-HDSSLWEVLLGACTTF--RNAHVAERVAKKIMELKP-----DCHLSYVLLDNVYRAVGRWNDAFKI 308 (337)
Q Consensus 240 ~~~~~~-~~~~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (337)
..+++. ++.. .....|+-+..+|++- ++..+.++.|..-..+.| .+...|..++..|.+.++++.|...
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 999997 4543 3456677776666544 455555555554444556 5678999999999999999998875
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=3.5e-19 Score=145.45 Aligned_cols=246 Identities=11% Similarity=0.047 Sum_probs=201.7
Q ss_pred HHHHHcCCChhHHHHHHHHHhh--cCc--ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 037592 59 LQGYCQTGDFESVIRIFREMEE--IDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134 (337)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (337)
+......|+++.|+..+++... |+. .....+.+++...|+++.|...++. . .+|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 3456678999999999988766 332 3456678999999999999987654 2 346778888899999999999
Q ss_pred HHHHHHHhcCC----CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHH
Q 037592 135 DFAHQIFLQMP----VR-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209 (337)
Q Consensus 135 ~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (337)
++|++.++++. .| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999864 24 566778888999999999999999987 45777888889999999999999999999
Q ss_pred HHHhcCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 210 MTKEYRIKPKIEHY---NCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 210 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+++. .|+.... ..++..+...|++++|..+|+++- .+.+...++.+..++.+.|++++|+..++++++.+|+
T Consensus 156 ~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9765 3553211 223344556699999999999852 4557778999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHcCChhh-HHHHHHHHHHhCC
Q 037592 285 CHLSYVLLDNVYRAVGRWND-AFKIRTLMKYSGV 317 (337)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~ 317 (337)
++.++..++.++...|+.++ +.++++++.+...
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999976 5788888877543
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=4.4e-17 Score=143.24 Aligned_cols=301 Identities=13% Similarity=0.023 Sum_probs=151.7
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHh----cCChHHHHHHHHHcccC-ChhhHHHHHHHHHc----CCChhHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGK----CGLVDESHRVFDKMLKK-NSVSSSALLQGYCQ----TGDFESVI 72 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~ 72 (337)
+++|...|+...+.| +...+..|...|.. .+++++|...|++.... +...+..|...|.. .+++++|+
T Consensus 59 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345555666555543 34455555555555 56666666666655333 44455555555555 55566666
Q ss_pred HHHHHHhh-cCcccHHHHHHHHHh----hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHhc
Q 037592 73 RIFREMEE-IDLFSFGIVLRACAG----LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK----CGCVDFAHQIFLQ 143 (337)
Q Consensus 73 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 143 (337)
+.|++..+ -+...+..+...|.. .+++++|...|++..+.+ +...+..|...|.. .++.++|...|++
T Consensus 136 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 136 KWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 66665554 233344444444444 445555555555555442 34444445555554 4555555555544
Q ss_pred CC-CCcHHhHHHHHH------------------------------------HHHh----CCCHhHHHHHHHHHHhcCCCC
Q 037592 144 MP-VRNLITWNSMIS------------------------------------GFAQ----NGRGEEALRIFDDMTEGGTKP 182 (337)
Q Consensus 144 ~~-~~~~~~~~~l~~------------------------------------~~~~----~~~~~~a~~~~~~m~~~~~~p 182 (337)
.. ..+..++..+.. .|.. .+++++|+..|++..+.|
T Consensus 213 a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--- 289 (490)
T 2xm6_A 213 SATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--- 289 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---
Confidence 33 223333444444 4443 444444544444444332
Q ss_pred CHhHHHHHHHHHhhc-----CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHhcCCCchhH
Q 037592 183 DHVSFIGVLSACSHM-----GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG---LLEEAETLIENADCRHDSSL 254 (337)
Q Consensus 183 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~ 254 (337)
+...+..+...+... +++++|...++++.+. .+...+..+...|...| ++++|.+.|++.-...++..
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a 365 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAA 365 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHH
Confidence 222333333444433 4555555555554321 12334444444554434 45555555554322234445
Q ss_pred HHHHHHHHhc----CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH----cCChhhHHHHHHHHHHhCC
Q 037592 255 WEVLLGACTT----FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA----VGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 255 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 317 (337)
+..+...|.. .+++++|...|+++.+.. ++.++..|..+|.. .+++++|...|++..+.+.
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5555555555 566666666666665532 24556666666665 5666666666666666553
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=6.9e-17 Score=141.98 Aligned_cols=270 Identities=11% Similarity=-0.029 Sum_probs=197.6
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHh----cCChHHHHHHHHHcccC-ChhhHHHHHHHHHc----CCChhHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGK----CGLVDESHRVFDKMLKK-NSVSSSALLQGYCQ----TGDFESVI 72 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~ 72 (337)
+++|...|+...+.| +...+..|..+|.. .+++++|++.|++..+. +...+..+...|.. .+++++|+
T Consensus 131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 455666666665544 34455555555555 55666666666665333 45556666666665 66777777
Q ss_pred HHHHHHhh-cCcccHHHHHHHHHh----hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHhc
Q 037592 73 RIFREMEE-IDLFSFGIVLRACAG----LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK----CGCVDFAHQIFLQ 143 (337)
Q Consensus 73 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 143 (337)
+.|++..+ .+..++..+...+.. .+++++|..++++..+.+ +...+..+...|.. .++.++|+..|++
T Consensus 208 ~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 208 QWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 77776666 444456666666654 667777777777776653 34566667777777 7888888888888
Q ss_pred CCC-CcHHhHHHHHHHHHhC-----CCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC---chhhHHHHHHHHHHhc
Q 037592 144 MPV-RNLITWNSMISGFAQN-----GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG---LIDRGRKHFASMTKEY 214 (337)
Q Consensus 144 ~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 214 (337)
... .+...+..+...|... +++++|...|++..+.| +...+..+...+...| +.++|.+.+++..+.
T Consensus 285 a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 285 SAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK- 360 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-
Confidence 763 4667788888888887 89999999999998864 3456666777777656 889999999999653
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhcCCCchhHHHHHHHHHhc----CCChhHHHHHHHHHHhcCCC
Q 037592 215 RIKPKIEHYNCMVDLLGR----AGLLEEAETLIENADCRHDSSLWEVLLGACTT----FRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~ 284 (337)
.++..+..|...|.. .+++++|.+.|++.-...+...+..+...|.. .+++++|...|+++.+..|+
T Consensus 361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 467888999999998 89999999999986434467778888888877 89999999999999998887
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=7e-18 Score=135.15 Aligned_cols=219 Identities=10% Similarity=-0.016 Sum_probs=173.3
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC--C----c----HHhHHH
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--R----N----LITWNS 154 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~ 154 (337)
.+..+...+...|++++|...++++++.. .+..++..+..++...|++++|+..+++... | + ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45556666777777777777777777766 6677777788888888888888888877662 1 1 467888
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
+...|...|++++|...|+++.+. .|+. ..+...|++++|...++.++.. .+.+...+..++..+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence 888899999999999999988874 3442 3456678889999999988643 2345677888888999999
Q ss_pred ChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 235 LLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 235 ~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
++++|...+++. . .+.+...+..+..++...|++++|+..++++.+..|+++.++..++.++...|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999874 2 33456778888888999999999999999999999998899999999999999999999999988
Q ss_pred HHhC
Q 037592 313 KYSG 316 (337)
Q Consensus 313 ~~~~ 316 (337)
.+..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7654
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.81 E-value=1.3e-17 Score=134.89 Aligned_cols=240 Identities=13% Similarity=0.044 Sum_probs=114.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC--chhHHHHHHHHHhcC
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCG 132 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 132 (337)
....+...|++++|+.+|+++.+ |+ ...+..+..++...|++++|...++++++....++ ...+..+..++...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 33344444444444444444433 22 22344444444444444444444444444211011 112344444444445
Q ss_pred CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHH
Q 037592 133 CVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209 (337)
Q Consensus 133 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (337)
++++|+..|++.. +.+..++..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|...++.
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444443 2233444455555555555555555555544431 11223333333122223355555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHh----cCCCc------hhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 210 MTKEYRIKPKIEHYNCMVDLLGRAGL---LEEAETLIENA----DCRHD------SSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
+++.. +.+...+..+..++...|+ +++|...+++. ...|+ ...|..+...|...|++++|...++
T Consensus 168 a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 168 VLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 54331 2234445555555555555 55555555442 11122 2456667778888899999999999
Q ss_pred HHHhcCCCccchHHHHHHHHHHcC
Q 037592 277 KIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 277 ~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
++.+++|+++.++..+.......+
T Consensus 246 ~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 246 NILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcCccHHHHHHHhhhhhcccc
Confidence 999999998877777766555443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-17 Score=133.62 Aligned_cols=228 Identities=13% Similarity=0.026 Sum_probs=124.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHccc--CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC--------cccHHHH
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALLQGYCQTGDFESVIRIFREMEE--ID--------LFSFGIV 89 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~~~l 89 (337)
..+..+...+...|++++|+..|++... .+...|..+..++...|++++|++.++++.+ |+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4555666666666666666666666522 4455566666666666666666666666554 21 2344444
Q ss_pred HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHH
Q 037592 90 LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169 (337)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 169 (337)
..++...|++++|...++++++.. |+. ..+...|++++|.
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CCH-------HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC---------------------------------chh-------HHHHHHhHHHHHH
Confidence 445555555555555555554432 221 2233445555555
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-
Q 037592 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D- 247 (337)
Q Consensus 170 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 247 (337)
..++++.... +.+...+..+...+...|++++|...++.+++.. +.+..++..++.+|...|++++|...+++. .
T Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 126 KKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5555555531 1123344445555556666666666666654432 334555666666666666666666666653 2
Q ss_pred CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcC------CCccchHHHH
Q 037592 248 CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK------PDCHLSYVLL 292 (337)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l 292 (337)
.+.+...|..+..++...|++++|...++++.+.. |++...+..+
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 22234556666666666677777777777666655 6554444443
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=8.5e-18 Score=131.34 Aligned_cols=196 Identities=12% Similarity=-0.015 Sum_probs=153.3
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 037592 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191 (337)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 191 (337)
+++...+..+...+.+.|++++|+..|++.. +.+...+..+..++.+.|++++|+..|++..+..+ .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 3567788888888999999999999998765 34677888888999999999999999999888532 2556777788
Q ss_pred HHHhhc-----------CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCchhHHHHHH
Q 037592 192 SACSHM-----------GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSSLWEVLL 259 (337)
Q Consensus 192 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 259 (337)
..+... |++++|...++++++.. +.+...+..+..+|...|++++|+..|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 99999999999997652 445788899999999999999999999973 2116778889999
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
.++...|++++|+..|+++.+..|+++..+..++.++...|++++|...+++.-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988754
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.80 E-value=5.9e-18 Score=137.05 Aligned_cols=237 Identities=8% Similarity=-0.101 Sum_probs=166.6
Q ss_pred cCCChhHHHHHHHHHhhc-------CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH
Q 037592 64 QTGDFESVIRIFREMEEI-------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF 136 (337)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 136 (337)
..|++++|++.|+++.+. +..++..+..++...|++++|...++++++..+ .+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 345566666666665541 223455566666666666666666666666644 456777777778888888888
Q ss_pred HHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 137 AHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 137 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
|+..|+++. +.+..++..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++..+..
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888877766 335677888888888889999999999888874 444444444555556778999999999887664
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCCc-----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc
Q 037592 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD-CRHD-----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 287 (337)
. +++...+ .++..+...++.++|...+++.- ..|. ...+..+...+...|++++|...++++.+..|++..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2 3444444 36777778888889999888752 2232 467788889999999999999999999999998644
Q ss_pred hHHHHHHHHHHcCChhhHHHHH
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
.+ ..++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 56777888899988776
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=3.6e-16 Score=138.79 Aligned_cols=311 Identities=9% Similarity=-0.011 Sum_probs=199.9
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cCChhhHHHHHH-HHHcCCChhHHHH----
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KKNSVSSSALLQ-GYCQTGDFESVIR---- 73 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~-~~~~~g~~~~A~~---- 73 (337)
++++|..+|+.+++.. +-+...|..++..+.+.|++++|..+|++++ .|+...|...+. .....|+.+.|.+
T Consensus 27 ~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~ 105 (530)
T 2ooe_A 27 PIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQ 105 (530)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHH
Confidence 3567778888887753 4456677888888888888888888888873 345555655553 2234566655554
Q ss_pred HHHHHhh-----c-CcccHHHHHHHHHh---------hchhhhhHHHHHHHHHhhCCCC-chhHHHHHHHH---------
Q 037592 74 IFREMEE-----I-DLFSFGIVLRACAG---------LAALRLGKEVHCQYIRRSGCKD-VIIESALVDLY--------- 128 (337)
Q Consensus 74 ~~~~~~~-----~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~--------- 128 (337)
+|++... | +...|...+..... .|+++.|..+|++.++. +..+ ..+|.......
T Consensus 106 ~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~~~~~ 184 (530)
T 2ooe_A 106 AYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINIHLAK 184 (530)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhchhHHH
Confidence 5555443 1 22344444444333 57777788777777762 1111 12222111100
Q ss_pred ----HhcCCHH------------------------------------------------------------HHHHHHhcC
Q 037592 129 ----AKCGCVD------------------------------------------------------------FAHQIFLQM 144 (337)
Q Consensus 129 ----~~~g~~~------------------------------------------------------------~A~~~~~~~ 144 (337)
.+.+++. +|..+|+++
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 0111222 233333333
Q ss_pred C---CCcHHhHHHHHHHHHh-------CCCHh-------HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHH
Q 037592 145 P---VRNLITWNSMISGFAQ-------NGRGE-------EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207 (337)
Q Consensus 145 ~---~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 207 (337)
. +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3 2244556666666654 68876 88889988876312334667777888888889999999999
Q ss_pred HHHHHhcCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc-hhHHHHHHHH-HhcCCChhHHHHHHHHHHhcC
Q 037592 208 ASMTKEYRIKPK-I-EHYNCMVDLLGRAGLLEEAETLIENA-DCRHD-SSLWEVLLGA-CTTFRNAHVAERVAKKIMELK 282 (337)
Q Consensus 208 ~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~ 282 (337)
+++++. +|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +...|+++.|..+|+++++..
T Consensus 345 ~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 345 NRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 998753 454 3 47888888888889999999999874 33333 2222222212 335889999999999999989
Q ss_pred CCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 283 PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 283 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
|+++..|..++..+.+.|+.++|..+|++....+
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 9888899999999999999999999999988764
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.4e-16 Score=136.13 Aligned_cols=293 Identities=9% Similarity=-0.104 Sum_probs=215.0
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHccc-----------C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh-----c
Q 037592 19 GNVVVESSLVDMYGKCGLVDESHRVFDKMLK-----------K-NSVSSSALLQGYCQTGDFESVIRIFREMEE-----I 81 (337)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~ 81 (337)
.....|+.|...+...|++++|++.|++..+ + ...+|+.+..+|...|++++|...+++..+ +
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456799999999999999999999987621 2 356799999999999999999999999876 1
Q ss_pred C------cccHHHHHHHHHh--hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHH---HhcCCHHHHHHHHhcCC---CC
Q 037592 82 D------LFSFGIVLRACAG--LAALRLGKEVHCQYIRRSGCKDVIIESALVDLY---AKCGCVDFAHQIFLQMP---VR 147 (337)
Q Consensus 82 ~------~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~---~~ 147 (337)
+ ..++.....++.. .+++++|...|+++++..+ .+...+..+..++ ...++.++|++.+++.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 1245555555544 4579999999999999865 4566666665553 45577788888887765 34
Q ss_pred cHHhHHHHHHHHHh----CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH
Q 037592 148 NLITWNSMISGFAQ----NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 148 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (337)
+..++..+...+.. .|++++|..++++...... .+...+..+...+...|++++|...++++++.. +.+..++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~ 284 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLH 284 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHH
Confidence 56666666655544 5678999999999887633 356678888899999999999999999997653 4456777
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 037592 224 NCMVDLLGRA-------------------GLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282 (337)
Q Consensus 224 ~~l~~~~~~~-------------------g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 282 (337)
..+..+|... +.+++|...+++. . .+.+...+..+...+...|++++|+..|+++++..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 7777666432 2355677777653 2 23355678888899999999999999999999988
Q ss_pred CCccc---hHHHHHH-HHHHcCChhhHHHHHHHHHHh
Q 037592 283 PDCHL---SYVLLDN-VYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 283 p~~~~---~~~~l~~-~~~~~g~~~~A~~~~~~m~~~ 315 (337)
|++.. .+..++. .+...|++++|+..|++..+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 87433 2333333 345779999999999887764
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.6e-19 Score=161.89 Aligned_cols=162 Identities=13% Similarity=0.134 Sum_probs=128.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhcCC-------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHH
Q 037592 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP-------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189 (337)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 189 (337)
...+|++||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35689999999999999999999997653 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCch-hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCC----CchhHHHHHHHHHhc
Q 037592 190 VLSACSHMGLI-DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR----HDSSLWEVLLGACTT 264 (337)
Q Consensus 190 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~ 264 (337)
+|.++++.|+. +.|.++|++|. ..|+.||..+|+.++....+.+-++...++...+..+ |...+...|...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 99999999984 78999999995 5599999999999987665554444443332222211 224455556677776
Q ss_pred CC---------ChhHHHHHHHHHH
Q 037592 265 FR---------NAHVAERVAKKIM 279 (337)
Q Consensus 265 ~g---------~~~~a~~~~~~~~ 279 (337)
.+ ..++....|++-+
T Consensus 285 d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 285 DGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp CSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred CCCCcCccccCCHHHHHHHHHHHH
Confidence 55 2356666666554
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=4.5e-17 Score=137.44 Aligned_cols=244 Identities=11% Similarity=0.037 Sum_probs=196.6
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhch-hhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 52 SVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLAA-LRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
...|+.+..++...|++++|+..++++.+ |+ ..+|..+..++...|+ +++|+..++++++..+ .+..+|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 45688888889999999999999999888 44 4567888888888896 9999999999998876 678888899999
Q ss_pred HHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh-cCchhhH
Q 037592 128 YAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH-MGLIDRG 203 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a 203 (337)
+...|++++|+..|+++. +.+..+|..+..++...|++++|+..|+++++.... +...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999999887 446788999999999999999999999999886433 66778888888888 5665777
Q ss_pred -----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHhcCCC-chhHHHHHHHHHhcCC--------C
Q 037592 204 -----RKHFASMTKEYRIKPKIEHYNCMVDLLGRAG--LLEEAETLIENADCRH-DSSLWEVLLGACTTFR--------N 267 (337)
Q Consensus 204 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g--------~ 267 (337)
+..++++++.. +-+...|+.+..++...| ++++|.+.++++...| +...+..+..+|.+.| +
T Consensus 255 ~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 47888887642 445788888888888888 6889999888875444 3456677777777763 2
Q ss_pred -hhHHHHHHHHH-HhcCCCccchHHHHHHHHHHc
Q 037592 268 -AHVAERVAKKI-MELKPDCHLSYVLLDNVYRAV 299 (337)
Q Consensus 268 -~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 299 (337)
.++|+++++++ .+++|.....|..++..+...
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 58999999999 889999888888887776653
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=4.5e-16 Score=125.77 Aligned_cols=230 Identities=10% Similarity=-0.009 Sum_probs=187.2
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCccc----HHHHHH
Q 037592 21 VVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFS----FGIVLR 91 (337)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~----~~~l~~ 91 (337)
...+......+...|++++|+..|+++.. | +...+..+..++...|++++|++.++++.+ ++... |..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 44566678899999999999999999843 3 566899999999999999999999999988 33333 788999
Q ss_pred HHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHH
Q 037592 92 ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 168 (337)
++...|++++|...++++++..+ .+..++..+..+|...|++++|+..|++.. +.+...+..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999865 577899999999999999999999999988 33567788888344445699999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc---hhhHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCChHHH
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGL---IDRGRKHFASMTKEYRIKPK------IEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A 239 (337)
...|+++.+... .+...+..+...+...|+ +++|...++++++...-.|+ ..++..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999998632 245667777778888888 88899999998765433344 25788899999999999999
Q ss_pred HHHHHHh-cCCCch
Q 037592 240 ETLIENA-DCRHDS 252 (337)
Q Consensus 240 ~~~~~~~-~~~~~~ 252 (337)
.+.|++. ...|+.
T Consensus 241 ~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 241 DAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCccH
Confidence 9999974 344543
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=3.4e-17 Score=127.92 Aligned_cols=192 Identities=14% Similarity=0.033 Sum_probs=93.8
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHh
Q 037592 19 GNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAG 95 (337)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 95 (337)
++...+..+...+.+.|++++|+..|++.+. | +...|..+..++.+.|++++|+..|++..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 67 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--------------- 67 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------
Confidence 3444455555555555555555555555422 1 344455555555555555555555555544
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc-----------CCHHHHHHHHhcCC---CCcHHhHHHHHHHHHh
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC-----------GCVDFAHQIFLQMP---VRNLITWNSMISGFAQ 161 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 161 (337)
..+ .+...+..+..++... |++++|+..|++.. +.+...+..+..+|..
T Consensus 68 ----------------~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 68 ----------------RTP-RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp ----------------HCT-TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ----------------hCC-CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 322 2333333444444444 55555555555443 2234455555566666
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
.|++++|+..|++..+.. .+...+..+..++...|++++|...++.+++.. +.+...+..+...+...|++++|..
T Consensus 131 ~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 131 LGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------
T ss_pred cCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHH
Confidence 666666666666666554 455555556666666666666666666665432 3345555666666666666666666
Q ss_pred HHHHh
Q 037592 242 LIENA 246 (337)
Q Consensus 242 ~~~~~ 246 (337)
.|++.
T Consensus 207 ~~~~~ 211 (217)
T 2pl2_A 207 AAALE 211 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 66543
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=4.8e-16 Score=124.20 Aligned_cols=200 Identities=12% Similarity=0.020 Sum_probs=120.5
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhC
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQN 162 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 162 (337)
+..+...+...|++++|...++++++..+ .+..++..+..+|...|++++|.+.++++. +.+...+..+...|...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 34444555555555555555555555433 345555666666666666666666666554 23455666666666777
Q ss_pred CCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 163 GRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
|++++|..+++++.+.+..| +...+..+...+...|++++|...++++++.. +.+...+..++..+...|++++|..
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777666532233 33455556666667777777777777765432 3345666666677777777777777
Q ss_pred HHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 242 LIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 242 ~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
.+++. ... .+...+..+...+...|++++|.+.++++.+..|+++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 77653 222 334455556666677777777777777777777765433
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.76 E-value=5.8e-17 Score=128.69 Aligned_cols=206 Identities=12% Similarity=0.059 Sum_probs=113.0
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHh
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQ 161 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 161 (337)
.+..+...+...|++++|...++++++..+ .+..++..+..++...|++++|+..++++. +.+..++..+...|..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 344445555555556666665555555433 345555556666666666666666666554 2345556666666666
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..++..+...|++++|..
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666543 2244555556666666677777777666665432 3345566666666666666666666
Q ss_pred HHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 242 LIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 242 ~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
.+++. . .+.+..++..+..++...|++++|...++++.+..|+++..+..+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 66653 1 22234556666666666777777777777777766666555554433
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=1.1e-15 Score=123.82 Aligned_cols=221 Identities=11% Similarity=-0.054 Sum_probs=92.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhc-CcccHHHHHHHHHh----hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHH
Q 037592 54 SSSALLQGYCQTGDFESVIRIFREMEEI-DLFSFGIVLRACAG----LAALRLGKEVHCQYIRRSGCKDVIIESALVDLY 128 (337)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (337)
++..+...+...|++++|+++|++..++ +..++..+...+.. .+++++|...|++..+.+ +...+..+...|
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 3344444444444444444444444331 12223333333333 444444444444444332 333444444444
Q ss_pred Hh----cCCHHHHHHHHhcCC-CCcHHhHHHHHHHHHh----CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh---
Q 037592 129 AK----CGCVDFAHQIFLQMP-VRNLITWNSMISGFAQ----NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH--- 196 (337)
Q Consensus 129 ~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--- 196 (337)
.. .+++++|+..|++.. ..+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~ 161 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRG 161 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred hCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCC
Confidence 44 444444444444433 1233344444444444 455555555555544432 22333333344443
Q ss_pred -cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhcCCCchhHHHHHHHHHhc----CCC
Q 037592 197 -MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR----AGLLEEAETLIENADCRHDSSLWEVLLGACTT----FRN 267 (337)
Q Consensus 197 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 267 (337)
.+++++|...+++..+. .+...+..+...|.. .+++++|...|++.-...+...+..+...|.. .++
T Consensus 162 ~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 162 TPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCC
T ss_pred CCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccC
Confidence 44555555555544321 123344444444444 44444444444432111113333334444444 444
Q ss_pred hhHHHHHHHHHHhcCCC
Q 037592 268 AHVAERVAKKIMELKPD 284 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~ 284 (337)
+++|...++++.+..|+
T Consensus 238 ~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGAK 254 (273)
T ss_dssp STTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 44444444444444443
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.76 E-value=3.7e-17 Score=139.84 Aligned_cols=287 Identities=13% Similarity=0.026 Sum_probs=221.5
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-C----hhhHHHHHHHHHcCCChhHHHHHHHHHhh-----cC---
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-N----SVSSSALLQGYCQTGDFESVIRIFREMEE-----ID--- 82 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~--- 82 (337)
.+....+..+...+...|++++|+..|+++.. | + ...|..+...+...|++++|...++++.. .+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44556677788999999999999999999832 3 2 34688899999999999999999999866 11
Q ss_pred -cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-CC----chhHHHHHHHHHhcCC--------------------HHH
Q 037592 83 -LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-KD----VIIESALVDLYAKCGC--------------------VDF 136 (337)
Q Consensus 83 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~ 136 (337)
..++..+...+...|++++|...++++++.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 336777888999999999999999998876432 12 4577888999999999 999
Q ss_pred HHHHHhcCC-----CC----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCC-CCC----HhHHHHHHHHHhhcCchhh
Q 037592 137 AHQIFLQMP-----VR----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGT-KPD----HVSFIGVLSACSHMGLIDR 202 (337)
Q Consensus 137 A~~~~~~~~-----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~ 202 (337)
|...+++.. .+ ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 988887764 11 234688889999999999999999999875311 111 2367778888999999999
Q ss_pred HHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHh-------cCCC-chhHHHHHHHHHhcCCChhH
Q 037592 203 GRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLEEAETLIENA-------DCRH-DSSLWEVLLGACTTFRNAHV 270 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~ 270 (337)
|...+++++....-.++ ..++..+...|...|++++|...+++. +..+ ...++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999988653211122 567788899999999999999999863 1111 14467778888999999999
Q ss_pred HHHHHHHHHhcC------CCccchHHHHHHHHHHcCChhh
Q 037592 271 AERVAKKIMELK------PDCHLSYVLLDNVYRAVGRWND 304 (337)
Q Consensus 271 a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 304 (337)
|...++++.++. |....++..+...+...|+...
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999998742 3335578888889988887643
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.75 E-value=1.9e-15 Score=122.35 Aligned_cols=224 Identities=11% Similarity=-0.085 Sum_probs=193.5
Q ss_pred cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHhcCC-CCcHHhHHHHHH
Q 037592 83 LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK----CGCVDFAHQIFLQMP-VRNLITWNSMIS 157 (337)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~ 157 (337)
..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++.. ..+..++..+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 82 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 346677888899999999999999999983 456788889999999 999999999999876 347788999999
Q ss_pred HHHh----CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh----cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037592 158 GFAQ----NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH----MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229 (337)
Q Consensus 158 ~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (337)
.|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...++++.+. + +...+..+...
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSL 155 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHH
Confidence 9999 999999999999999864 66778888888888 99999999999999653 2 56788888889
Q ss_pred HHh----cCChHHHHHHHHHhcCCCchhHHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH---
Q 037592 230 LGR----AGLLEEAETLIENADCRHDSSLWEVLLGACTT----FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA--- 298 (337)
Q Consensus 230 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 298 (337)
|.. .+++++|...|++.-...+...+..+...|.. .+++++|+..++++.+..| +..+..+..+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 988 99999999999985333456778888888888 9999999999999999876 5788899999999
Q ss_pred -cCChhhHHHHHHHHHHhCCc
Q 037592 299 -VGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 299 -~g~~~~A~~~~~~m~~~~~~ 318 (337)
.+++++|...|++..+.|..
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTCH
T ss_pred cccCHHHHHHHHHHHHHcCCH
Confidence 99999999999999987754
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.75 E-value=6.3e-17 Score=138.90 Aligned_cols=261 Identities=11% Similarity=0.036 Sum_probs=168.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhh--cCc-----ccHHHHHHHHHhhchhhhhHHHHHHHHHhh-----CCCCchhHH
Q 037592 55 SSALLQGYCQTGDFESVIRIFREMEE--IDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRS-----GCKDVIIES 122 (337)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~ 122 (337)
+..+...+...|++++|+.+|+++.+ |+. ..+..+..++...|++++|...++++++.. .+....++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 44455666677777777777777666 332 245566666677777777777777666541 112345666
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---------CcHHhHHHHHHHHHhCCC-----------------HhHHHHHHHHHH
Q 037592 123 ALVDLYAKCGCVDFAHQIFLQMPV---------RNLITWNSMISGFAQNGR-----------------GEEALRIFDDMT 176 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~ 176 (337)
.+...|...|++++|...+++... ....++..+...|...|+ +++|+..+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 677777777777777777766541 123456667777777777 777777777654
Q ss_pred hc----CCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHh-
Q 037592 177 EG----GTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLEEAETLIENA- 246 (337)
Q Consensus 177 ~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~- 246 (337)
+. +..+ ...++..+...+...|++++|...++++++...-.++ ...+..+...|...|++++|...+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 1111 1235566667777888888888888777543211112 236677778888888888888887753
Q ss_pred c----CC---CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc------cchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 247 D----CR---HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC------HLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 247 ~----~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
. .. ....++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|...+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 11 113456667777888888888888888887743322 3477778888888888888888888776
Q ss_pred Hh
Q 037592 314 YS 315 (337)
Q Consensus 314 ~~ 315 (337)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=8.1e-17 Score=135.89 Aligned_cols=240 Identities=10% Similarity=0.037 Sum_probs=200.2
Q ss_pred ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC-HHHHHHHHhcCC---CCcHHhHHHHHHHH
Q 037592 84 FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC-VDFAHQIFLQMP---VRNLITWNSMISGF 159 (337)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~~ 159 (337)
..|..+..++...|++++|+..++++++..+ .+..+|+.+..++...|+ +++|+..|+++. +.+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3577788889999999999999999999876 678899999999999997 999999999987 44678999999999
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCChHH
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR-AGLLEE 238 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 238 (337)
...|++++|+..|+++++.... +...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999986433 66788888899999999999999999998753 4568899999999999 666588
Q ss_pred H-----HHHHHH-hcCCC-chhHHHHHHHHHhcCC--ChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC---------
Q 037592 239 A-----ETLIEN-ADCRH-DSSLWEVLLGACTTFR--NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG--------- 300 (337)
Q Consensus 239 A-----~~~~~~-~~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 300 (337)
| +..|++ +...| +...|..+...+...| ++++|++.+.++ +..|+++.++..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 467776 34444 5667888888888888 689999999998 889998999999999999874
Q ss_pred ChhhHHHHHHHH-HHhCCccCCCCcceeccc
Q 037592 301 RWNDAFKIRTLM-KYSGVKKMPGKSWIEANS 330 (337)
Q Consensus 301 ~~~~A~~~~~~m-~~~~~~~~~~~~~~~~~~ 330 (337)
..++|+.+|+++ .+ +.|.....|.....
T Consensus 333 ~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 333 ILNKALELCEILAKE--KDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHHHHHHHHHHT--TCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCchhHHHHHHHHH
Confidence 258999999987 44 44545556654433
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=4.2e-16 Score=135.24 Aligned_cols=303 Identities=11% Similarity=0.020 Sum_probs=144.7
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCCh---HHHHHHHHHcccCChhhHHHHHHHHHcCC-----ChhHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLV---DESHRVFDKMLKKNSVSSSALLQGYCQTG-----DFESVI 72 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~ 72 (337)
++++|.++|+...+.| +...+..|..+|...|+. ++|...|++..+.++..+..+...+...+ ++++|+
T Consensus 18 ~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~ 94 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAE 94 (452)
T ss_dssp HHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHH
Confidence 3678999999988876 445556677777778888 89999999887667777888888565555 778999
Q ss_pred HHHHHHhh-cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC----CHHHHHHHHhcCCCC
Q 037592 73 RIFREMEE-IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG----CVDFAHQIFLQMPVR 147 (337)
Q Consensus 73 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~ 147 (337)
..|++..+ -+...+..+...|...+..+.+...++.+.......+......|...|...+ ..+.+..+++.....
T Consensus 95 ~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~ 174 (452)
T 3e4b_A 95 SLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT 174 (452)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC
Confidence 99999887 3445777777777766654433333332222211122334444555555555 233334444444444
Q ss_pred cHHhHHHHHHHHHhCC---CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc----CchhhHHHHHHHHHHhcCCCCCH
Q 037592 148 NLITWNSMISGFAQNG---RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM----GLIDRGRKHFASMTKEYRIKPKI 220 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~ 220 (337)
++..+..|...|...| +.++|+..|++..+.|.. +...+..+...|... +++++|...|+... +-++
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~ 248 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYP 248 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGST
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCH
Confidence 4445555555555555 555555555555554422 222223333333332 45555555555542 2233
Q ss_pred HHHHHHHHH-H--HhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCC-----ChhHHHHHHHHHHhcCCCccchHHHH
Q 037592 221 EHYNCMVDL-L--GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR-----NAHVAERVAKKIMELKPDCHLSYVLL 292 (337)
Q Consensus 221 ~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~p~~~~~~~~l 292 (337)
..+..|... | ...+++++|.+.|++.-...+...+..+...|. .| ++++|+.+|+++. |.++.++..|
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~L 324 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHH
Confidence 344444444 2 234555555555554322223344444444443 22 5555555555544 4445555555
Q ss_pred HHHHHH----cCChhhHHHHHHHHHHhC
Q 037592 293 DNVYRA----VGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 293 ~~~~~~----~g~~~~A~~~~~~m~~~~ 316 (337)
+..|.. ..++++|...|++..+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 555444 125555555555544433
No 49
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=1.1e-14 Score=129.26 Aligned_cols=212 Identities=9% Similarity=-0.005 Sum_probs=168.6
Q ss_pred hhHHHHHHHHHhhCCCCchhHHHHHHHHHh-------cCCHH-------HHHHHHhcCCC---C-cHHhHHHHHHHHHhC
Q 037592 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAK-------CGCVD-------FAHQIFLQMPV---R-NLITWNSMISGFAQN 162 (337)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~ 162 (337)
++..+|++++...+ .+..+|..++..+.+ .|+++ +|+.+|++... | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45567777777754 567888888888876 79987 89999998763 4 577899999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCCH--hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCChHHH
Q 037592 163 GRGEEALRIFDDMTEGGTKPDH--VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL-LGRAGLLEEA 239 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 239 (337)
|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|+++++.. +.+...+...+.. +...|+.++|
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHH
Confidence 9999999999999984 5543 478888888888999999999999997532 2233444333322 3468999999
Q ss_pred HHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc----hHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 240 ETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL----SYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 240 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
..+|++. ...| +...|..++..+.+.|+.+.|..+|+++....|.++. .|...+......|+.+.+..+++++.
T Consensus 411 ~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999973 3334 5678999999999999999999999999998776554 78888888889999999999999988
Q ss_pred HhCC
Q 037592 314 YSGV 317 (337)
Q Consensus 314 ~~~~ 317 (337)
+.-.
T Consensus 491 ~~~p 494 (530)
T 2ooe_A 491 TAFR 494 (530)
T ss_dssp HHTH
T ss_pred HHCc
Confidence 7554
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.4e-16 Score=136.27 Aligned_cols=265 Identities=12% Similarity=0.059 Sum_probs=208.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCc-----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-----CCc
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-----KDV 118 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 118 (337)
....+......+...|++++|+.+|+++.+ |+. .++..+...+...|++++|...+++++..... ...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 445567788899999999999999999988 443 46778889999999999999999998765311 225
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCC-----Cc----HHhHHHHHHHHHhCCC--------------------HhHHH
Q 037592 119 IIESALVDLYAKCGCVDFAHQIFLQMPV-----RN----LITWNSMISGFAQNGR--------------------GEEAL 169 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 169 (337)
.++..+...|...|++++|...+++... ++ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 6778889999999999999999988761 12 3478888999999999 99999
Q ss_pred HHHHHHHhc----CCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHH
Q 037592 170 RIFDDMTEG----GTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLEEAE 240 (337)
Q Consensus 170 ~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 240 (337)
..+++..+. +..| ...++..+...+...|++++|...++++++...-.++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999887543 1111 1246677788899999999999999998654222222 347888899999999999999
Q ss_pred HHHHHh-c---CCCc----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc------cchHHHHHHHHHHcCChhhHH
Q 037592 241 TLIENA-D---CRHD----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC------HLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 241 ~~~~~~-~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 306 (337)
..+++. . ..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999863 1 1111 4567778888999999999999999998854332 457889999999999999999
Q ss_pred HHHHHHHHh
Q 037592 307 KIRTLMKYS 315 (337)
Q Consensus 307 ~~~~~m~~~ 315 (337)
..+++..+.
T Consensus 328 ~~~~~al~~ 336 (406)
T 3sf4_A 328 HFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.74 E-value=1.1e-15 Score=119.66 Aligned_cols=194 Identities=12% Similarity=0.017 Sum_probs=88.0
Q ss_pred HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhC-CCH
Q 037592 90 LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQN-GRG 165 (337)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~~~ 165 (337)
...+...|++++|...++++++..+ .+..++..+..+|...|++++|...++++. +.+..++..+...|... |++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH
Confidence 3333334444444444444433322 233344444444444444444444444433 22334444455555555 555
Q ss_pred hHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037592 166 EEALRIFDDMTEGGTKPD-HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244 (337)
Q Consensus 166 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 244 (337)
++|...++++.+.+..|+ ...+..+...+...|++++|...++++++.. +.+...+..++..+...|++++|...++
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544211222 2334444445555555555555555554321 2234445555555555555555555554
Q ss_pred Hh-cCC--CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc
Q 037592 245 NA-DCR--HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286 (337)
Q Consensus 245 ~~-~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 286 (337)
+. ... .+...+..+...+...|+.+.+..+++.+.+..|+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 172 KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 42 111 2333344444444555555555555555555555543
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.74 E-value=1.2e-16 Score=132.85 Aligned_cols=267 Identities=12% Similarity=0.038 Sum_probs=155.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHccc--C-C----hhhHHHHHHHHHcCCChhHHHHHHHHHhh-----cC----cccH
Q 037592 23 VESSLVDMYGKCGLVDESHRVFDKMLK--K-N----SVSSSALLQGYCQTGDFESVIRIFREMEE-----ID----LFSF 86 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~ 86 (337)
.+......+...|++++|+..|+++.. | + ...+..+...+...|++++|.+++++..+ ++ ..++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666677777777777776622 2 2 24456666667777777777777766543 11 1233
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCC--
Q 037592 87 GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR-- 164 (337)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 164 (337)
..+...+...|++++|...+++.++........ .....++..+...|...|+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------------------------VGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc--------------------------hHHHHHHHHHHHHHHHcCccc
Confidence 344444444444444444444444332110000 0001244455555555555
Q ss_pred ------------------HhHHHHHHHHHHhc----CCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC--
Q 037592 165 ------------------GEEALRIFDDMTEG----GTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-- 219 (337)
Q Consensus 165 ------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 219 (337)
+++|...+++.... +..| ....+..+...+...|++++|...++++++...-.++
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 56666555554321 1111 1234555666677777788777777776543211111
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHh-c---CCCc----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc----
Q 037592 220 --IEHYNCMVDLLGRAGLLEEAETLIENA-D---CRHD----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC---- 285 (337)
Q Consensus 220 --~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---- 285 (337)
..++..+...+...|++++|...+++. . ..++ ..++..+...+...|++++|...++++.+..|..
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 236677777888888888888887753 1 1111 3456667777888888888888888887744332
Q ss_pred --cchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 286 --HLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 286 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
..++..++.+|...|++++|...+++..+.
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 336778888888899999999998887764
No 53
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=150.07 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=104.4
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHh---cCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHH
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTE---GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
..+|++||.+|++.|+.++|.++|++|.+ .|+.||..|||++|.+||+.|++++|.++|++| ...|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM-~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV-KDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCcHHHHHH
Confidence 46899999999999999999999988764 589999999999999999999999999999999 56699999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHh---cCCCchhHHHHHHHHHh
Q 037592 226 MVDLLGRAGLL-EEAETLIENA---DCRHDSSLWEVLLGACT 263 (337)
Q Consensus 226 l~~~~~~~g~~-~~A~~~~~~~---~~~~~~~~~~~l~~~~~ 263 (337)
+|.++++.|+. ++|.++|++| |..||..+|+.++.++.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 99999999985 7899999987 79999999998885543
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=1.2e-16 Score=129.32 Aligned_cols=237 Identities=8% Similarity=-0.116 Sum_probs=173.1
Q ss_pred HHhcCChHHHHHHHHHcccC-------ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhh
Q 037592 31 YGKCGLVDESHRVFDKMLKK-------NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALR 100 (337)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 100 (337)
+...|++++|+..|+++... +..+|..++..+...|++++|+..|+++.+ | +..++..+..++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 34567888888888887542 356678888888888999999998888887 3 3567788888888889999
Q ss_pred hhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
+|...++++++..+ .+..++..+..+|.+.|++++|...|+++. .|+.......+..+...|++++|...+++....
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999988888754 567888888899999999999999988876 444444444444556678999999999887775
Q ss_pred CCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCch
Q 037592 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-----IEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDS 252 (337)
Q Consensus 179 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 252 (337)
. +++...+ .++..+...++.++|...++.++.. .|+ ..++..++..|...|++++|...|++. ...|+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 3 3343444 3666677778888888888887532 232 577888899999999999999999874 455533
Q ss_pred hHHHHHHHHHhcCCChhHHHHHH
Q 037592 253 SLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 253 ~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 233345667778888877665
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=9.4e-16 Score=122.48 Aligned_cols=198 Identities=9% Similarity=-0.069 Sum_probs=172.4
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
...+..+...+...|++++|...|+++. +.+...+..+...|...|++++|...|+++.+... .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 5677888999999999999999999876 44678899999999999999999999999988643 3667788888999
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHH
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a 271 (337)
...|++++|.+++++++. .+..| +...+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999965 22344 5678888999999999999999999974 2 233567788888999999999999
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 272 ERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
...++++.+..|++...+..++..+...|++++|.++++++.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999889999999999999999999999999988653
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.73 E-value=1.2e-15 Score=119.47 Aligned_cols=199 Identities=11% Similarity=-0.055 Sum_probs=171.5
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 037592 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192 (337)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 192 (337)
.+..++..+...+...|++++|+..|+++. +.+...+..+...|...|++++|...++++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 356778889999999999999999999876 4467789999999999999999999999998863 236677888889
Q ss_pred HHhhc-CchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCCh
Q 037592 193 ACSHM-GLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNA 268 (337)
Q Consensus 193 ~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~ 268 (337)
.+... |++++|...++.+++ .+..| +...+..++.++...|++++|...+++. ... .+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999976 22334 3678889999999999999999999874 333 3467788888999999999
Q ss_pred hHHHHHHHHHHhcCC-CccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 269 HVAERVAKKIMELKP-DCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
++|...++++.+..| +++..+..+...+...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999999 888889888999999999999999999987754
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.73 E-value=2.1e-16 Score=135.59 Aligned_cols=263 Identities=10% Similarity=0.015 Sum_probs=206.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHccc--C-Ch----hhHHHHHHHHHcCCChhHHHHHHHHHhh---------cCccc
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLK--K-NS----VSSSALLQGYCQTGDFESVIRIFREMEE---------IDLFS 85 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~ 85 (337)
..+..+...+...|++++|+..|+++.. | +. ..|..+...|...|++++|++.++++.+ ....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4455677888999999999999999843 3 22 4688899999999999999999999876 12346
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhhC-----CCCchhHHHHHHHHHhcCC-----------------HHHHHHHHhc
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRSG-----CKDVIIESALVDLYAKCGC-----------------VDFAHQIFLQ 143 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 143 (337)
+..+...+...|++++|...++++++... .....++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 77888899999999999999999887631 1235678889999999999 9999998887
Q ss_pred CCC-----C----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHhhcCchhhHHHHHHH
Q 037592 144 MPV-----R----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-PD----HVSFIGVLSACSHMGLIDRGRKHFAS 209 (337)
Q Consensus 144 ~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (337)
... . ...++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 651 1 2347888899999999999999999998764111 11 12677788899999999999999998
Q ss_pred HHHhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHh-------cCC-CchhHHHHHHHHHhcCCChhHHHHHHHH
Q 037592 210 MTKEYRIKP----KIEHYNCMVDLLGRAGLLEEAETLIENA-------DCR-HDSSLWEVLLGACTTFRNAHVAERVAKK 277 (337)
Q Consensus 210 ~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 277 (337)
++....-.. ...++..+...|...|++++|...+++. +.. ....++..+...|...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 865421111 1567888999999999999999999863 111 1234677788889999999999999999
Q ss_pred HHhcCCC
Q 037592 278 IMELKPD 284 (337)
Q Consensus 278 ~~~~~p~ 284 (337)
+.++.+.
T Consensus 369 al~~~~~ 375 (411)
T 4a1s_A 369 HLQLAXX 375 (411)
T ss_dssp HHHHCCH
T ss_pred HHHHHhh
Confidence 9987665
No 58
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=1.2e-14 Score=135.84 Aligned_cols=252 Identities=11% Similarity=0.027 Sum_probs=201.7
Q ss_pred hcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHh
Q 037592 33 KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112 (337)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (337)
..+++++|.++.+++ .+..+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.+++...++.
T Consensus 1088 ~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566777777777665 34778889999999999999999999775 66777888999999999999999999988876
Q ss_pred hCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 037592 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192 (337)
Q Consensus 113 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 192 (337)
. +++.+.+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+..
T Consensus 1164 ~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~ 1229 (1630)
T 1xi4_A 1164 A--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 1229 (1630)
T ss_pred c--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHH
Confidence 5 33334445889999999988655443 3556677778999999999999999999885 37888999
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 272 (337)
++.+.|+++.|.+.++++ .+..+|..+..+|...|++..|......+.. ++..+..++..|.+.|.+++|+
T Consensus 1230 tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv--~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV--HADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc--CHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998876 3457899899999999999999988775433 4555778899999999999999
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 273 RVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
.+++..+.++|.+...|..|..+|.+. ++++.++.++..
T Consensus 1301 ~LlE~aL~LeraH~gmftELaiLyaKy-~peklmEhlk~f 1339 (1630)
T 1xi4_A 1301 TMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHhccChhHhHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 999999999999888888888888774 344444444333
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=4e-16 Score=123.82 Aligned_cols=199 Identities=10% Similarity=0.033 Sum_probs=156.4
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 037592 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192 (337)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 192 (337)
.....+..+...+...|++++|...|+++. +.+...+..+...|...|++++|...++++.+... .+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 356677788889999999999999999876 34678899999999999999999999999988632 36677888889
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHV 270 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~ 270 (337)
.+...|++++|.+.++++++.. +.+...+..++..+...|++++|...+++. . .+.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999997653 556788999999999999999999999974 2 33456778888899999999999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 271 AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 271 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
|+..++++.+..|+++.++..++.+|...|++++|...++++.+...
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999999999999999988554
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.72 E-value=6e-16 Score=128.61 Aligned_cols=256 Identities=12% Similarity=0.047 Sum_probs=160.3
Q ss_pred CchhhHHHHHHHHhcCCCCc----hHhHHHHHHHHHhcCChHHHHHHHHHcccC---------ChhhHHHHHHHHHcCCC
Q 037592 1 RLKQGKEVHAKVITLGLCGN----VVVESSLVDMYGKCGLVDESHRVFDKMLKK---------NSVSSSALLQGYCQTGD 67 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~ 67 (337)
++++|...|+.+.+.+ +.+ ..++..+...+...|++++|...+++.... ...++..+...+...|+
T Consensus 20 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp CHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 4789999999999974 223 367888999999999999999999887321 25568889999999999
Q ss_pred hhHHHHHHHHHhh-----cC----cccHHHHHHHHHhhch--------------------hhhhHHHHHHHHHhhCC-CC
Q 037592 68 FESVIRIFREMEE-----ID----LFSFGIVLRACAGLAA--------------------LRLGKEVHCQYIRRSGC-KD 117 (337)
Q Consensus 68 ~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~~~~-~~ 117 (337)
+++|.+.+++..+ ++ ..++..+...+...|+ +++|...+++.+..... ++
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~ 178 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 178 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999877 22 2266777778888888 67777766665443110 00
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC----CCC-CHhHHHHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG----TKP-DHVSFIGVLS 192 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~ 192 (337)
.. ....++..+...|...|++++|...+++..+.. ..+ ...++..+..
T Consensus 179 ~~---------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 179 RA---------------------------AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231 (338)
T ss_dssp HH---------------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH---------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 00 011234444445555555555555555443320 000 1124455555
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHh-------cCCC-chhHHHHHHH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLEEAETLIENA-------DCRH-DSSLWEVLLG 260 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~ 260 (337)
.+...|++++|...+++.+....-..+ ..++..+...|...|++++|...+++. +..+ ...++..+..
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 311 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN 311 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 666666666666666665432111111 345566667777777777777777653 1111 1334556667
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCC
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
.+...|++++|...++++.++.+.
T Consensus 312 ~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 312 AYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHcCChHHHHHHHHHHHHHHHh
Confidence 777888888888888887776554
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.71 E-value=2.4e-16 Score=137.63 Aligned_cols=210 Identities=7% Similarity=-0.047 Sum_probs=178.2
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH-HHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHH
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV-DFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFD 173 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (337)
.++++...+++.....+ .+...+..+..++...|++ ++|++.|++.. +.+..+|..+..+|...|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666666554432 5678888899999999999 99999998876 3457889999999999999999999999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHhhc---------CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CCh
Q 037592 174 DMTEGGTKPDHVSFIGVLSACSHM---------GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA--------GLL 236 (337)
Q Consensus 174 ~m~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 236 (337)
+..+. .|+...+..+...+... |++++|...++++++.. +.+...|..+..+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99885 56778888888889999 99999999999997653 45688899999999988 999
Q ss_pred HHHHHHHHHh-cCCC----chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 237 EEAETLIENA-DCRH----DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 237 ~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
++|...|++. ...| +...|..+..+|...|++++|+..|+++.+++|+++.++..+..++...|++++|++.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999974 3344 6778899999999999999999999999999999999999999999999999999976654
Q ss_pred H
Q 037592 312 M 312 (337)
Q Consensus 312 m 312 (337)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
No 62
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=3.2e-14 Score=133.10 Aligned_cols=263 Identities=13% Similarity=0.101 Sum_probs=213.8
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhc
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLA 97 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 97 (337)
+..+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|+++|....+ ++......++.+|++.+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence 5778999999999999999999999775 6788899999999999999999999998887 55555667999999998
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
+++....+ ++ .++...+..+...|...|++++|..+|... ..|..++.+|.+.|++++|.+.+++.
T Consensus 1182 rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1182 RLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred CHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence 88854444 22 256667778999999999999999999985 58999999999999999999999987
Q ss_pred cCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCC-chhHH
Q 037592 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRH-DSSLW 255 (337)
Q Consensus 178 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~ 255 (337)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++. ++..+ ....|
T Consensus 1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 25588998999999999999998866543 34566777999999999999999999986 34443 34456
Q ss_pred HHHHHHHh--cCCChhHHHHHHHHHHhcCC-----CccchHHHHHHHHHHcCChhhHHHH
Q 037592 256 EVLLGACT--TFRNAHVAERVAKKIMELKP-----DCHLSYVLLDNVYRAVGRWNDAFKI 308 (337)
Q Consensus 256 ~~l~~~~~--~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (337)
+-+...|+ +-++..++.+.|..-..+.| .+...|..++..|.+.|+++.|...
T Consensus 1318 tELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1318 TELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 55555554 44566666777766555555 4567899999999999999999843
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.69 E-value=2.3e-15 Score=127.98 Aligned_cols=285 Identities=9% Similarity=-0.044 Sum_probs=203.1
Q ss_pred HHhcCChHHHHHHHHHccc------C--ChhhHHHHHHH--HHcCCChhHHH-----------HHHHHHhh-cCc-c---
Q 037592 31 YGKCGLVDESHRVFDKMLK------K--NSVSSSALLQG--YCQTGDFESVI-----------RIFREMEE-IDL-F--- 84 (337)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~-~~~-~--- 84 (337)
+.+.+++++|..+++++.. . +...|..++.. ..-.++.+.+. +.++.+.. ++. .
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 4678999999999988721 2 23333443322 12223333444 66666644 111 1
Q ss_pred ---cHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-C----CchhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCc---
Q 037592 85 ---SFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K----DVIIESALVDLYAKCGCVDFAHQIFLQMP-----VRN--- 148 (337)
Q Consensus 85 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~--- 148 (337)
.+......+...|++++|...++++++.... + ...++..+..+|...|++++|+..+++.. .++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1223566778899999999999999875211 2 34678889999999999999999888766 121
Q ss_pred --HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHhhcCchhhHHHHHHHHHHhc---CC-C
Q 037592 149 --LITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-PD----HVSFIGVLSACSHMGLIDRGRKHFASMTKEY---RI-K 217 (337)
Q Consensus 149 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~ 217 (337)
..+++.+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|...++++++-. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 357888899999999999999999988753111 11 1367778889999999999999999986521 22 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHh-------cCCCchhHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCCccc
Q 037592 218 PKIEHYNCMVDLLGRAGLLEEAETLIENA-------DCRHDSSLWEVLLGACTTFRN---AHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~ 287 (337)
....++..+..+|...|++++|...+++. +.+.....+..+...+...|+ +++|+.++++. ...|....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~ 340 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLED 340 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHH
Confidence 34677889999999999999999999863 122222335666777889998 77777777766 33344456
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.+..++..|...|++++|...+++..+..
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 78899999999999999999999987643
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.69 E-value=1.1e-14 Score=110.41 Aligned_cols=166 Identities=11% Similarity=0.077 Sum_probs=132.6
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
+...|..+...|...|++++|+..|++..+..+. +..++..+..++.+.|++++|...+..+.... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 4567888888888888888888888888875322 55677777788888888888888888886542 44566777778
Q ss_pred HHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhH
Q 037592 228 DLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 305 (337)
..+...++++.|...+++. . .+.+...+..+...+.+.|++++|++.|+++++.+|+++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888764 2 2335666777888888999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHhC
Q 037592 306 FKIRTLMKYSG 316 (337)
Q Consensus 306 ~~~~~~m~~~~ 316 (337)
+..|++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99998887743
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.68 E-value=7.4e-15 Score=124.90 Aligned_cols=281 Identities=9% Similarity=-0.013 Sum_probs=206.8
Q ss_pred CchhhHHHHHHHHhc--CC--CCchHhHHHHHHHH--HhcCChHHHH-----------HHHHHccc-C-Chh------hH
Q 037592 1 RLKQGKEVHAKVITL--GL--CGNVVVESSLVDMY--GKCGLVDESH-----------RVFDKMLK-K-NSV------SS 55 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~--~~~~~~~~A~-----------~~~~~~~~-~-~~~------~~ 55 (337)
++++|..+++++.+. .. .++...|-.++..- .-.++++.+. +.++.+.. + +.. .+
T Consensus 27 ~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 106 (383)
T 3ulq_A 27 SIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFN 106 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHHH
Confidence 467889998888664 22 33444445554321 2233444444 56655521 1 111 22
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhh-----cC----cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC------chh
Q 037592 56 SALLQGYCQTGDFESVIRIFREMEE-----ID----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD------VII 120 (337)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 120 (337)
......+...|++++|++.|++..+ +| ..++..+..++...|++++|...+++.++...... ..+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 3366778899999999999999977 32 24688889999999999999999999988643222 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC-----CCc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhc----CC-CCCHhH
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP-----VRN----LITWNSMISGFAQNGRGEEALRIFDDMTEG----GT-KPDHVS 186 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~ 186 (337)
++.+..+|...|++++|+..|++.. .++ ..++..+...|...|++++|+..|++..+. +. +....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 8889999999999999999998876 122 247888999999999999999999998772 23 334557
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHhcCCCch-hHHHHHH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYR---IKPKIEHYNCMVDLLGRAGL---LEEAETLIENADCRHDS-SLWEVLL 259 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~l~ 259 (337)
+..+...+.+.|++++|...+++.++... .+.....+..+...|...|+ +++|..++++.+..|+. ..+..+.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 346 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 78888999999999999999998865321 11223345678888889999 89999999988655543 3566777
Q ss_pred HHHhcCCChhHHHHHHHHHHhc
Q 037592 260 GACTTFRNAHVAERVAKKIMEL 281 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~ 281 (337)
..|...|++++|...++++.++
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999873
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=1.1e-13 Score=120.01 Aligned_cols=301 Identities=10% Similarity=-0.042 Sum_probs=189.2
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcC-----ChHHHHHHHHHcccC-ChhhHHHHHHHHHcCCChhHH---H
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCG-----LVDESHRVFDKMLKK-NSVSSSALLQGYCQTGDFESV---I 72 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A---~ 72 (337)
+++|...|+...+. +...+..|..++...+ ++++|+..|++...+ +...+..|...|...+..+++ .
T Consensus 54 ~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~ 129 (452)
T 3e4b_A 54 IKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQ 129 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHH
T ss_pred HHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 46788888877754 5566677777555554 778899999888555 455777788877776654443 3
Q ss_pred HHHHHHhh-cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC---CHHHHHHHHhcCC---
Q 037592 73 RIFREMEE-IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG---CVDFAHQIFLQMP--- 145 (337)
Q Consensus 73 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~--- 145 (337)
+.+.+... .+......+...|...+.++++......+.+.....++..+..|...|...| +.++|++.|++..
T Consensus 130 ~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 130 QQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp HHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 44443333 4566777777777777766666665555554444445557777888888888 7888888887765
Q ss_pred CCcHHhHHHHHHHHHhC----CCHhHHHHHHHHHHhcCCCCCHhHHHHHHHH-H--hhcCchhhHHHHHHHHHHhcCCCC
Q 037592 146 VRNLITWNSMISGFAQN----GRGEEALRIFDDMTEGGTKPDHVSFIGVLSA-C--SHMGLIDRGRKHFASMTKEYRIKP 218 (337)
Q Consensus 146 ~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~ 218 (337)
.++...+..+...|... +++++|+..|++.. .| +...+..+... + ...+++++|...|++..+. |
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g--- 281 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D--- 281 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---
Confidence 33444446666666544 68888888888876 32 33444445444 3 4577888888888887542 3
Q ss_pred CHHHHHHHHHHHHhcC-----ChHHHHHHHHHhcCCCchhHHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCccchH
Q 037592 219 KIEHYNCMVDLLGRAG-----LLEEAETLIENADCRHDSSLWEVLLGACTT----FRNAHVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~ 289 (337)
++..+..|...|. .| ++++|.+.|++.- ..++..+..+...|.. ..++++|..+|+++.+. .++.+.
T Consensus 282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~ 357 (452)
T 3e4b_A 282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSAD 357 (452)
T ss_dssp CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHH
T ss_pred CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHH
Confidence 5667777777776 44 8888888888766 5566666666666654 34788888888887663 335567
Q ss_pred HHHHHHHHH----cCChhhHHHHHHHHHHhCCc
Q 037592 290 VLLDNVYRA----VGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 290 ~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 318 (337)
..|..+|.. ..+.++|...|+...+.|..
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 777777764 34777888888777766643
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=5.6e-14 Score=115.76 Aligned_cols=214 Identities=11% Similarity=0.033 Sum_probs=146.7
Q ss_pred hHHHHHHHHHhh--cC-cccHHHHHHHHH-------hhchh-------hhhHHHHHHHHHh-hCCCCchhHHHHHHHHHh
Q 037592 69 ESVIRIFREMEE--ID-LFSFGIVLRACA-------GLAAL-------RLGKEVHCQYIRR-SGCKDVIIESALVDLYAK 130 (337)
Q Consensus 69 ~~A~~~~~~~~~--~~-~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 130 (337)
++|..+|+++.. |+ ...|..++..+. ..|++ ++|..+|++.++. .+ .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHh
Confidence 455556666555 32 234444444443 23554 7788888887773 32 456677888888888
Q ss_pred cCCHHHHHHHHhcCC--CC-cHH-hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH-hhcCchhhHHH
Q 037592 131 CGCVDFAHQIFLQMP--VR-NLI-TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC-SHMGLIDRGRK 205 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~--~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 205 (337)
.|++++|..+|+++. .| +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888776 23 333 788888888888888888888888877532 2333443333222 23688888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c---CCC--chhHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037592 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D---CRH--DSSLWEVLLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
+|+.+++.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++..+.+.|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887653 446778888888888888888888888874 2 243 34567777888888888888888888888
Q ss_pred hcCCCcc
Q 037592 280 ELKPDCH 286 (337)
Q Consensus 280 ~~~p~~~ 286 (337)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8888754
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.65 E-value=8.3e-14 Score=118.18 Aligned_cols=297 Identities=10% Similarity=-0.004 Sum_probs=207.8
Q ss_pred CCchHhHHHHHHHH--HhcCChHHHHHHHHHccc------CC--hhhHHHHHHH--HHcCCChhHHH---------HHHH
Q 037592 18 CGNVVVESSLVDMY--GKCGLVDESHRVFDKMLK------KN--SVSSSALLQG--YCQTGDFESVI---------RIFR 76 (337)
Q Consensus 18 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~------~~--~~~~~~l~~~--~~~~g~~~~A~---------~~~~ 76 (337)
.|+..+-+.|-..| ...+++++|..+++++.. .| ...|..++.. ..-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 56666667777777 889999999999998721 22 3334444332 11112222222 5566
Q ss_pred HHhh---cCc-----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-C----CchhHHHHHHHHHhcCCHHHHHHHHhc
Q 037592 77 EMEE---IDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K----DVIIESALVDLYAKCGCVDFAHQIFLQ 143 (337)
Q Consensus 77 ~~~~---~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 143 (337)
.+.. +.. ..+......+...|++++|...++++++.... + ...++..+..+|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5543 111 12334455678899999999999999875321 2 246778899999999999999988877
Q ss_pred CC-----CC-----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc----CCCC-CHhHHHHHHHHHhhcCchhhHHHHHH
Q 037592 144 MP-----VR-----NLITWNSMISGFAQNGRGEEALRIFDDMTEG----GTKP-DHVSFIGVLSACSHMGLIDRGRKHFA 208 (337)
Q Consensus 144 ~~-----~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 208 (337)
.. .+ ...+++.+...|...|++++|...|++..+. +..+ ...++..+...+...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 65 11 1357888999999999999999999988763 1111 12466778888999999999999999
Q ss_pred HHHHhc---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-------cCCCchhHHHHHHHHHhcCCC---hhHHHHHH
Q 037592 209 SMTKEY---RIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-------DCRHDSSLWEVLLGACTTFRN---AHVAERVA 275 (337)
Q Consensus 209 ~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 275 (337)
+++.-. +.+....++..+..+|.+.|++++|...+++. +.+.....+..+...+...++ +.+|+..+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 986511 22334678889999999999999999999873 122223345555566888888 77777777
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
++. ...|.....+..++..|...|++++|...|++..+.
T Consensus 327 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 327 EKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 762 233444567788999999999999999999988653
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=1.5e-13 Score=113.23 Aligned_cols=214 Identities=10% Similarity=0.034 Sum_probs=173.9
Q ss_pred hhhHHHHHHHHHhhCCCCchhHHHHHHHHHh-------cCCH-------HHHHHHHhcCCC---C-cHHhHHHHHHHHHh
Q 037592 100 RLGKEVHCQYIRRSGCKDVIIESALVDLYAK-------CGCV-------DFAHQIFLQMPV---R-NLITWNSMISGFAQ 161 (337)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 161 (337)
++|..+|++++...+ .+...|..++..+.. .|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 678899999999875 778889888887763 5886 899999998763 3 55689999999999
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCH-h-HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCChHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDH-V-SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG-RAGLLEE 238 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 238 (337)
.|++++|..+|+++.+ +.|+. . .|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 45543 3 78888888999999999999999997532 344556654444432 3799999
Q ss_pred HHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhc---CCC-ccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 239 AETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL---KPD-CHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 239 A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
|..+|++. .. +.+...|..++..+.+.|+++.|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999974 22 235677888999999999999999999999995 553 4668889999999999999999999999
Q ss_pred HHhCCc
Q 037592 313 KYSGVK 318 (337)
Q Consensus 313 ~~~~~~ 318 (337)
.+....
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 886654
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=124.52 Aligned_cols=240 Identities=14% Similarity=0.092 Sum_probs=125.1
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 037592 52 SVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131 (337)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (337)
..++..+...+...|++++|+.+++++.+. .........+....++..+...|...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------------~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALED------------------------LEKTSGHDHPDVATMLNILALVYRDQ 82 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------HHHHHCSSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------------HHHHcCCCCHHHHHHHHHHHHHHHHC
Confidence 445666677777777777777777766540 00000000111233344444555555
Q ss_pred CCHHHHHHHHhcCCC----------C-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc------CCCC-CHhHHHHHHHH
Q 037592 132 GCVDFAHQIFLQMPV----------R-NLITWNSMISGFAQNGRGEEALRIFDDMTEG------GTKP-DHVSFIGVLSA 193 (337)
Q Consensus 132 g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~ 193 (337)
|++++|...+++... + ...++..+...|...|++++|...|+++.+. +..| ....+..+...
T Consensus 83 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 555555554444330 1 1234555566666666666666666665543 1112 22345555566
Q ss_pred HhhcCchhhHHHHHHHHHHhc-----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc----------CCCc------
Q 037592 194 CSHMGLIDRGRKHFASMTKEY-----R-IKPKIEHYNCMVDLLGRAGLLEEAETLIENAD----------CRHD------ 251 (337)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~------ 251 (337)
+...|++++|..++++++... + .+....++..+..+|...|++++|.+.+++.- ..+.
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 666677777777766664421 0 11123456666677777777777777766531 1111
Q ss_pred -hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 252 -SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 252 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
...+..+...+...+.+.++...++......|....++..++.+|...|++++|..+|++..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222334556666777777888887777887888889999999999999999999887653
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=3.8e-14 Score=107.48 Aligned_cols=157 Identities=16% Similarity=0.106 Sum_probs=99.8
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRAC 93 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 93 (337)
+..+|..+...|.+.|++++|++.|++.+ .| +..+|..+..+|.+.|++++|+..+++... | +...+..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45667777777777777777777777762 23 456677777777777777777777777665 2 223444555556
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALR 170 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (337)
...++++.+...+.+..+..+ .+...+..+..+|.+.|++++|++.|++.. +.+..+|..+..+|.+.|++++|+.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 666666666666666666543 445556666666666666666666666554 2345556666666666666666666
Q ss_pred HHHHHHh
Q 037592 171 IFDDMTE 177 (337)
Q Consensus 171 ~~~~m~~ 177 (337)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666655
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=9.7e-15 Score=127.47 Aligned_cols=208 Identities=8% Similarity=-0.019 Sum_probs=169.7
Q ss_pred CChHHHHHHHHHccc---CChhhHHHHHHHHHcCCCh-hHHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHH
Q 037592 35 GLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDF-ESVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHC 107 (337)
Q Consensus 35 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 107 (337)
+.+++++..++.... .+...+..+...+...|++ ++|++.|+++.+ |+ ..+|..+..++...|++++|...|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 346777777776632 2577788888999999999 999999999887 43 5578888889999999999999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhc---------CCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhC--------CCHhH
Q 037592 108 QYIRRSGCKDVIIESALVDLYAKC---------GCVDFAHQIFLQMP---VRNLITWNSMISGFAQN--------GRGEE 167 (337)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~--------~~~~~ 167 (337)
++++.. |+...+..+..+|... |++++|+..|++.. +.+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 998875 4468888888889888 99999999998876 44677888888888888 88999
Q ss_pred HHHHHHHHHhcCCC--CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 168 ALRIFDDMTEGGTK--PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 168 a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
|+..|++..+.... .+...+..+..++...|++++|...|+++++.. +.+...+..+..++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999885321 266788888889999999999999999987653 44567888889999999999999988776
Q ss_pred h
Q 037592 246 A 246 (337)
Q Consensus 246 ~ 246 (337)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 5
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.61 E-value=5.6e-13 Score=113.08 Aligned_cols=279 Identities=11% Similarity=0.020 Sum_probs=201.6
Q ss_pred CchhhHHHHHHHHhcC--C--CCchHhHHHHHHHH--HhcCChHHHH---------HHHHHcc---cC-C-h---hhHHH
Q 037592 1 RLKQGKEVHAKVITLG--L--CGNVVVESSLVDMY--GKCGLVDESH---------RVFDKML---KK-N-S---VSSSA 57 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~--~~~~~~~~A~---------~~~~~~~---~~-~-~---~~~~~ 57 (337)
++++|.++++++.+.- . .++...|-.|+..- .-.+.++.+. +.++.+. .+ + . ..|..
T Consensus 27 ~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~ 106 (378)
T 3q15_A 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFF 106 (378)
T ss_dssp CHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHHH
Confidence 4678999999876632 2 23444455554431 1112222222 4444442 22 1 1 12344
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh-----cC----cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-C-----CchhHH
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE-----ID----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K-----DVIIES 122 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 122 (337)
....+...|++++|+..|+++.+ ++ ..++..+..++...|+++.|...+++.++.... + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 56677899999999999999987 22 236778889999999999999999999876432 1 245677
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-----Cc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHh-----cCCCCCHhHHH
Q 037592 123 ALVDLYAKCGCVDFAHQIFLQMPV-----RN----LITWNSMISGFAQNGRGEEALRIFDDMTE-----GGTKPDHVSFI 188 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 188 (337)
.+..+|...|++++|.+.|++... ++ ..++..+..+|...|++++|+..|++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 899999999999999999987761 22 34788899999999999999999999877 32 22356777
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHhcCCCch-hHHHHHHHH
Q 037592 189 GVLSACSHMGLIDRGRKHFASMTKEYRI---KPKIEHYNCMVDLLGRAGL---LEEAETLIENADCRHDS-SLWEVLLGA 261 (337)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~l~~~ 261 (337)
.+...+.+.|++++|...+++.++...- +.....+..+...|...|+ +.+|...+++.+..|+. ..+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8889999999999999999998764322 2224456667777778888 89999999987655443 345667788
Q ss_pred HhcCCChhHHHHHHHHHHh
Q 037592 262 CTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~ 280 (337)
|...|++++|...|+++.+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999876
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.60 E-value=2.5e-12 Score=108.76 Aligned_cols=260 Identities=13% Similarity=0.014 Sum_probs=135.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHccc--C--Ch----hhHHHHHHHHHcCCChhHHHHHHHHHhh--c---Cc----ccHH
Q 037592 25 SSLVDMYGKCGLVDESHRVFDKMLK--K--NS----VSSSALLQGYCQTGDFESVIRIFREMEE--I---DL----FSFG 87 (337)
Q Consensus 25 ~~l~~~~~~~~~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~----~~~~ 87 (337)
..+...+...|++++|...+++... + +. ..++.+...+...|++++|.+.+++... + +. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444556677888888887777522 1 11 1355566677777788888777777665 1 11 1234
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhCC------C-CchhHHHHHHHHHhcCCHHHHHHHHhcCC--CC------cHHhH
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSGC------K-DVIIESALVDLYAKCGCVDFAHQIFLQMP--VR------NLITW 152 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~------~~~~~ 152 (337)
.+...+...|++++|...+++.++.... | ...++..+...+...|++++|...+++.. .+ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 4555666667777777777666654211 1 12344445566666666666666665543 00 12345
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH-hHHHH-----HHHHHhhcCchhhHHHHHHHHHHhcCCCC--CHHHHH
Q 037592 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDH-VSFIG-----VLSACSHMGLIDRGRKHFASMTKEYRIKP--KIEHYN 224 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 224 (337)
..+...+...|++++|...+++.......++. ..+.. .+..+...|++++|...++.........+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 55556666666666666666665543111111 11111 11224456666666666665532110000 012344
Q ss_pred HHHHHHHhcCChHHHHHHHHHh-------cCCCch-hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 225 CMVDLLGRAGLLEEAETLIENA-------DCRHDS-SLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 225 ~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
.+...+...|++++|...+++. +..++. ..+..+..++...|+.++|...++++....+.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 5555666666666666666542 111111 13333445555666666666666666655544
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.59 E-value=1.5e-13 Score=124.89 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=140.9
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
+..+|+.|...|.+.|++++|+..|++.++... -+..++..+..++.+.|++++|+..|+++++.. +-+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 456888899999999999999999999888532 246678888889999999999999999987642 34578899999
Q ss_pred HHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhH
Q 037592 228 DLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 305 (337)
.+|...|++++|++.|++. ...| +...|..+..+|.+.|++++|+..|+++++++|+++.++..++.++...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999873 3344 5677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 037592 306 FKIRTLMKYS 315 (337)
Q Consensus 306 ~~~~~~m~~~ 315 (337)
.+.+++..+.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887653
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.59 E-value=1.8e-13 Score=103.40 Aligned_cols=161 Identities=14% Similarity=0.068 Sum_probs=89.0
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037592 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (337)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+++.. +.+...+..++..+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Confidence 334444444444444444444443321 1133344444444445555555555555543321 2334445555555555
Q ss_pred cCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHH
Q 037592 233 AGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 233 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
.|++++|.+.+++. . .+.+...+..+...+...|++++|...++++.+..|+++..+..++.++...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555542 1 222444555666666777777777777777777777767777777777777777777777777
Q ss_pred HHHHhC
Q 037592 311 LMKYSG 316 (337)
Q Consensus 311 ~m~~~~ 316 (337)
+..+..
T Consensus 169 ~~~~~~ 174 (186)
T 3as5_A 169 KANELD 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 776544
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=2.2e-14 Score=117.92 Aligned_cols=241 Identities=12% Similarity=0.068 Sum_probs=138.6
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHccc--------C---ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLK--------K---NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGI 88 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 88 (337)
+..++..+...+...|++++|...|+++.. . ...++..+...|...|++++|..+++++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI------- 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence 456788899999999999999999999844 2 2456778888889999999999988877540
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC----------C-cHHhHHHHHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV----------R-NLITWNSMIS 157 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~ 157 (337)
++.......+....++..+...|...|++++|...++++.. + ...++..+..
T Consensus 99 -----------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 99 -----------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp -----------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -----------------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 00000000001223344444445555555555554444331 1 2234556666
Q ss_pred HHHhCCCHhHHHHHHHHHHhc------CCCCC-HhHHHHHHHHHhhcCchhhHHHHHHHHHHhc------CCCCC-----
Q 037592 158 GFAQNGRGEEALRIFDDMTEG------GTKPD-HVSFIGVLSACSHMGLIDRGRKHFASMTKEY------RIKPK----- 219 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~----- 219 (337)
.|...|++++|+.+|+++.+. +..|. ..++..+...+...|++++|...++++++.. ...+.
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 667777777777777666553 11222 2345566667777777777777777765421 01111
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHhc-CC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 220 --IEHYNCMVDLLGRAGLLEEAETLIENAD-CR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 220 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
...+..+...+...+.+.+|...++... .. ....++..+..+|.+.|++++|.+.++++.++.|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1222223333444555666666666543 22 34556777888899999999999999998887664
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=1.4e-12 Score=98.51 Aligned_cols=167 Identities=10% Similarity=-0.021 Sum_probs=141.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
...+..+...+...|++++|...++++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45667788889999999999999999873 367788899999999999999999999998863 33567788888899
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHH
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAE 272 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~ 272 (337)
...|++++|.+.++.+++.. +.+...+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999997653 556788899999999999999999999874 2 3345677888889999999999999
Q ss_pred HHHHHHHhcCCCccc
Q 037592 273 RVAKKIMELKPDCHL 287 (337)
Q Consensus 273 ~~~~~~~~~~p~~~~ 287 (337)
..++++.+..|++..
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999999998887544
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=1e-12 Score=103.23 Aligned_cols=203 Identities=9% Similarity=0.054 Sum_probs=143.7
Q ss_pred CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHH
Q 037592 82 DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISG 158 (337)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 158 (337)
|...+......+...|++++|...|+++++..++++...+..+..++...|++++|+..|++.. +.+..+|..+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4456777788888889999999999998888765666777778888888999999988888776 3356678888888
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCH-------hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDH-------VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK---IEHYNCMVD 228 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~ 228 (337)
|...|++++|+..|++..+.... +. ..|..+...+...|++++|+..++++++ ..|+ ...+..+..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHH
Confidence 88899999999999888875322 33 3466666777788888899888888863 3454 566777777
Q ss_pred HHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHH
Q 037592 229 LLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 295 (337)
+|...|+ ..++++. ...+...+.... ....+.+++|+..++++.++.|+++.+...+...
T Consensus 162 ~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7765543 2333321 111233333322 2344567899999999999999987666655443
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.55 E-value=3.8e-12 Score=107.69 Aligned_cols=259 Identities=12% Similarity=0.005 Sum_probs=140.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhh--cCcc------cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCC-C----chhHH
Q 037592 56 SALLQGYCQTGDFESVIRIFREMEE--IDLF------SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-D----VIIES 122 (337)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~ 122 (337)
......+...|++++|...+++... |+.. ++..+...+...|++++|...+++.+...... + ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444455566777777777776655 2221 23444555666677777777776666543221 1 12345
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC-------C---C-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCC----CHhHH
Q 037592 123 ALVDLYAKCGCVDFAHQIFLQMP-------V---R-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP----DHVSF 187 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~ 187 (337)
.+...+...|++++|...+++.. . | ....+..+...+...|++++|...+++........ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 56666667777777766666554 1 1 12344556666667777777777776665432211 12344
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHhc-CCCc-----hhHHH
Q 037592 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN-----CMVDLLGRAGLLEEAETLIENAD-CRHD-----SSLWE 256 (337)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~ 256 (337)
..+...+...|++++|...+++.............+. ..+..+...|++++|...+++.. ..|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 5555666667777777777766643311111111111 22233556677777777776542 1111 11344
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCC------ccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 257 VLLGACTTFRNAHVAERVAKKIMELKPD------CHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 257 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
.+...+...|++++|...++++....+. ....+..+..++...|+.++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555666677777777777666552211 112455566666677777777766666543
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.54 E-value=8.8e-13 Score=103.56 Aligned_cols=191 Identities=14% Similarity=-0.014 Sum_probs=122.0
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhcCC---C-CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 037592 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP---V-RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192 (337)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 192 (337)
++..+..+...+...|++++|+..|++.. + ++...+..+..++...|++++|+..|++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 45666677777777777777777777665 2 56666666777777777777777777777764221 3445666667
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc---hhHHHHHHHH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPKI-------EHYNCMVDLLGRAGLLEEAETLIENA-DCRHD---SSLWEVLLGA 261 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~ 261 (337)
.+...|++++|...++++++.. +.+. ..|..+...+...|++++|.+.|++. ...|+ ...|..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 7777777777777777776542 2233 44666667777777777777777763 44454 3445555555
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 262 CTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
|.. .+...++++..+.+.+...|.... ....+.+++|+..+++..+...
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 533 334455666666555444444333 2334567999999999888643
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.50 E-value=6e-12 Score=102.71 Aligned_cols=240 Identities=8% Similarity=-0.053 Sum_probs=133.4
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhc--C-ChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--G-LVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
.+|.+++.+..+.- +++...+ .+ + +. + ++++|...|++. +..|...|++++|.+.|++..
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-KL---F-SGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-hh---c-CCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Confidence 46777777777762 3322222 22 2 32 2 478888887765 445677788888888887765
Q ss_pred hc-----C----cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHH
Q 037592 80 EI-----D----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150 (337)
Q Consensus 80 ~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 150 (337)
+. + ..+|+.+..++...|++++|...+++.++... ..|+...+ ..
T Consensus 65 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~---------------~~g~~~~~-----------a~ 118 (292)
T 1qqe_A 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT---------------HRGQFRRG-----------AN 118 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HTTCHHHH-----------HH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------HcCCHHHH-----------HH
Confidence 40 1 12344445555555555555555544443211 11111111 23
Q ss_pred hHHHHHHHHHhC-CCHhHHHHHHHHHHhcCCCC-C----HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCH----
Q 037592 151 TWNSMISGFAQN-GRGEEALRIFDDMTEGGTKP-D----HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI---- 220 (337)
Q Consensus 151 ~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 220 (337)
+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++|+..++++++...-.+..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 556666777774 77777777777766531110 1 2345666677777777777777777775432111111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHh-cCCCchh------HHHHHHHHHh--cCCChhHHHHHHHHHHhcCCCc
Q 037592 221 -EHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSS------LWEVLLGACT--TFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 221 -~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
..+..++.++...|++++|...|++. ...|+.. .+..++.++. ..+++++|+..|+++..++|..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 14566677777777888888777763 3333321 2333444443 4566777777777776666664
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.50 E-value=1.7e-12 Score=106.05 Aligned_cols=201 Identities=11% Similarity=0.015 Sum_probs=135.4
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC-------CC--cHHhHHHHHHHHHhCCCHhHH
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-------VR--NLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a 168 (337)
++++|...|+++ +..|...|++++|...|++.. .+ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 234556677766666665554 11 134677788888888888888
Q ss_pred HHHHHHHHhcCCC---C--CHhHHHHHHHHHhhc-CchhhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHH
Q 037592 169 LRIFDDMTEGGTK---P--DHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 169 ~~~~~~m~~~~~~---p--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 238 (337)
+..|++..+.... + ...++..+...|... |++++|+..|+++++-..-..+ ..++..++..|...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888877653111 1 134677788888886 9999999999998754211111 3568889999999999999
Q ss_pred HHHHHHHh-cCCCch--------hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch-----HHHHHHHHH--HcCCh
Q 037592 239 AETLIENA-DCRHDS--------SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS-----YVLLDNVYR--AVGRW 302 (337)
Q Consensus 239 A~~~~~~~-~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 302 (337)
|...|++. ...|+. ..|..+..++...|++++|+..++++.++.|+.... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999974 223321 146677788999999999999999999999885443 344566664 34678
Q ss_pred hhHHHHHHHHH
Q 037592 303 NDAFKIRTLMK 313 (337)
Q Consensus 303 ~~A~~~~~~m~ 313 (337)
++|+..|+++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888876543
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=1.2e-12 Score=119.02 Aligned_cols=155 Identities=10% Similarity=0.044 Sum_probs=86.1
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHH
Q 037592 21 VVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACA 94 (337)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~ 94 (337)
..+|+.|...|.+.|++++|++.|++.+ .| +..+|+.+..+|.+.|++++|++.|++..+ |+ ..+|..+..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4556666666666666666666666652 22 355566666666666666666666666655 32 334555555555
Q ss_pred hhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--C-CcHHhHHHHHHHHHhCCCHhHHHHH
Q 037592 95 GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--V-RNLITWNSMISGFAQNGRGEEALRI 171 (337)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (337)
..|++++|++.|+++++..+ .+...++.+..+|.+.|++++|++.|++.. . .+...+..+..+|...|++++|.+.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 55555555555555555543 344555555555555555555555555444 2 2344555555555555555555555
Q ss_pred HHHHH
Q 037592 172 FDDMT 176 (337)
Q Consensus 172 ~~~m~ 176 (337)
++++.
T Consensus 168 ~~kal 172 (723)
T 4gyw_A 168 MKKLV 172 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.48 E-value=3.3e-13 Score=109.20 Aligned_cols=197 Identities=15% Similarity=0.125 Sum_probs=118.0
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCCC----------C-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-----CC-
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMPV----------R-NLITWNSMISGFAQNGRGEEALRIFDDMTEG-----GT- 180 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~- 180 (337)
..++..+..+|...|++++|+..++++.. | ...++..+...|...|++++|...|+++.+. +.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 45566666777777777777766665541 1 2345667777777777777777777776653 11
Q ss_pred CC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhc-----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc------
Q 037592 181 KP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEY-----R-IKPKIEHYNCMVDLLGRAGLLEEAETLIENAD------ 247 (337)
Q Consensus 181 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------ 247 (337)
.| ...++..+...+...|++++|...++++++.. + .+....++..+..+|...|++++|..++++.-
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 12 23456666777777888888888887775430 1 12234567777788888888888888877531
Q ss_pred ----CCCc-hhHHHHHHHHHhcCCC------hhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 248 ----CRHD-SSLWEVLLGACTTFRN------AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 248 ----~~~~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
..+. ...|..+...+...+. +..+...++......|....++..++.+|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 2223333333333222 22333333322223455566788889999999999999999888765
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.41 E-value=7e-11 Score=95.14 Aligned_cols=241 Identities=10% Similarity=0.004 Sum_probs=163.2
Q ss_pred HHHHHhcCChHHHHHHHHHcccCCh-hhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHHhhchhhhhHHH
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKKNS-VSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGLAALRLGKEV 105 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 105 (337)
++-..-.|.+..++.-...+...+. ..-.-+.++|+..|++.... .. |....+..+. .|.. ..+...
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~------~~~~~~~a~~~la-~~~~----~~a~~~ 88 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD------PTSKLGKVLDLYV-QFLD----TKNIEE 88 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC------SSSTTHHHHHHHH-HHHT----TTCCHH
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC------CCCHHHHHHHHHH-HHhc----ccHHHH
Confidence 4556678999999886666533232 23334558888888877521 11 2222222222 2222 227788
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCC
Q 037592 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-----RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 180 (337)
+++++..+ .++..++..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 88887765 35555566788889999999999999988742 2456777888999999999999999999987 4
Q ss_pred CC-----CHhHHHHHHHHHh--hcC--chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcC---
Q 037592 181 KP-----DHVSFIGVLSACS--HMG--LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADC--- 248 (337)
Q Consensus 181 ~p-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 248 (337)
.| +..+...++.++. ..| +...|..+|+++... .|+..+...++.++.+.|++++|.+.++.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 56 3566666666633 234 899999999998543 45533333444478899999999999876421
Q ss_pred ---------CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc
Q 037592 249 ---------RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 249 ---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 287 (337)
+.++.+...+|......|+ .|.++++++.+..|+++.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 3356666566655555676 788999999999999753
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=6e-12 Score=101.71 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=101.2
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHccc----------C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLK----------K-NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGI 88 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 88 (337)
...++..+...|...|++++|+..|+++.. + ...++..+...|...|++++|+++++++.+.
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------- 114 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------- 114 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------
Confidence 455677777777777888887777777631 1 2345666777777777777777777666530
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC----------C-cHHhHHHHHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV----------R-NLITWNSMIS 157 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~ 157 (337)
+++......+....++..+..+|...|++++|...++++.. | ...++..+..
T Consensus 115 -----------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 115 -----------------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp -----------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred -----------------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 00000000011233444455555555555555555544431 1 1234555666
Q ss_pred HHHhCCCHhHHHHHHHHHHhc-------CCCCCHh-HHHHHHHHHhhcCchhhH------HHHHHHHHHhcCCCCCHHHH
Q 037592 158 GFAQNGRGEEALRIFDDMTEG-------GTKPDHV-SFIGVLSACSHMGLIDRG------RKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-~~~~l~~~~~~~~~~~~a------~~~~~~~~~~~~~~~~~~~~ 223 (337)
.|...|++++|...++++.+. ...+... .+..+.......+....+ ...++... . ..+....++
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 255 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK-V-DSPTVNTTL 255 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC-C-CCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-C-CCHHHHHHH
Confidence 666666666666666665542 1122222 222222222222222222 22221110 0 011124566
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 037592 224 NCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
..+...|...|++++|..++++
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 6777777788888888877775
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.40 E-value=2.1e-11 Score=97.78 Aligned_cols=185 Identities=14% Similarity=0.039 Sum_probs=113.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhcCC--CC-c---HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-CC-HhHHH
Q 037592 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP--VR-N---LITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-PD-HVSFI 188 (337)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~~~ 188 (337)
+...+..+...+.+.|++++|+..|+++. .| + ..++..+..+|...|++++|+..|++..+..+. |. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34555556666666777777777776665 22 2 445666666677777777777777776664221 11 23344
Q ss_pred HHHHHHhh--------cCchhhHHHHHHHHHHhcCCCCCHHHH-----------------HHHHHHHHhcCChHHHHHHH
Q 037592 189 GVLSACSH--------MGLIDRGRKHFASMTKEYRIKPKIEHY-----------------NCMVDLLGRAGLLEEAETLI 243 (337)
Q Consensus 189 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 243 (337)
.+..++.. .|++++|...|+++++.. +.+.... ..+...|...|++++|...|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45555555 677777777777765543 1122222 55677888889999998888
Q ss_pred HHh-cCCCc----hhHHHHHHHHHhcC----------CChhHHHHHHHHHHhcCCCccc---hHHHHHHHHHHcCChh
Q 037592 244 ENA-DCRHD----SSLWEVLLGACTTF----------RNAHVAERVAKKIMELKPDCHL---SYVLLDNVYRAVGRWN 303 (337)
Q Consensus 244 ~~~-~~~~~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 303 (337)
+++ ...|+ ...+..+..+|... |++++|+..++++++..|+++. +...+...+...++++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 874 22333 34556666666655 8888999999999998888643 3334444444444433
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.40 E-value=1.2e-10 Score=93.73 Aligned_cols=238 Identities=9% Similarity=-0.039 Sum_probs=169.4
Q ss_pred HHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHH
Q 037592 60 QGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 138 (337)
+-..-.|++..++.-..++.. .+......+.+++...|++.... ...|....+..+.. |...+ |+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HH
Confidence 344567888888885544432 11223344568888888877531 22244334444443 33333 67
Q ss_pred HHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhc
Q 037592 139 QIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY 214 (337)
Q Consensus 139 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (337)
..|++.. .++..++..+..++...|++++|++++.+....|.. -+...+...+..+.+.|+.+.|.+.++.|.+.
T Consensus 87 ~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~- 165 (310)
T 3mv2_B 87 EELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA- 165 (310)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 7787766 355666678889999999999999999998776542 25567777889999999999999999999533
Q ss_pred CCCC-----CHHHHHHHHHHH--HhcC--ChHHHHHHHHHhcC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhc---
Q 037592 215 RIKP-----KIEHYNCMVDLL--GRAG--LLEEAETLIENADC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--- 281 (337)
Q Consensus 215 ~~~~-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 281 (337)
.| +..+...|+.++ ...| ++.+|..+|+++.. .|+..+...++.++.+.|++++|++.++.+.+.
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 66 356666666663 3334 89999999999753 354334445556899999999999999987765
Q ss_pred -------CCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 282 -------KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 282 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+|+++.++..++......|+ +|.++++++.+..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 58889999888888777887 8899999988744
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.38 E-value=1.1e-10 Score=91.29 Aligned_cols=185 Identities=11% Similarity=-0.019 Sum_probs=119.1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCC--CCc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH--hHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMP--VRN----LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH--VSFIG 189 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ 189 (337)
...+..+...+.+.|++++|+..|+++. .|+ ...+..+..+|.+.|++++|+..|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566777888888888888888776 232 246777788888888888888888888775322111 13333
Q ss_pred HHHHHhh------------------cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCc
Q 037592 190 VLSACSH------------------MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251 (337)
Q Consensus 190 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 251 (337)
+..++.. .|+.++|...|+.+++.. +-+...+....... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH-----
Confidence 3444433 355666666666665332 11122211111000 000000
Q ss_pred hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc---chHHHHHHHHHHcCChhhHHHHHHHHHHhCCcc
Q 037592 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH---LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 252 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 319 (337)
......+...|.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00112345678899999999999999999999865 568899999999999999999999888866553
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.37 E-value=8.6e-11 Score=94.16 Aligned_cols=171 Identities=11% Similarity=-0.016 Sum_probs=137.6
Q ss_pred CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC---HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HH
Q 037592 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD---HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IE 221 (337)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 221 (337)
..+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|+.+++...-.|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 446677888889999999999999999999886322 2 456777888999999999999999999876422223 56
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHh-cCCCc-hhHH-----------------HHHHHHHhcCCChhHHHHH
Q 037592 222 HYNCMVDLLGR--------AGLLEEAETLIENA-DCRHD-SSLW-----------------EVLLGACTTFRNAHVAERV 274 (337)
Q Consensus 222 ~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~~~-~~~~-----------------~~l~~~~~~~g~~~~a~~~ 274 (337)
.+..+..++.. .|++++|...|++. ...|+ .... ..+...|...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 77888889988 99999999999974 33333 2233 3456779999999999999
Q ss_pred HHHHHhcCCCc---cchHHHHHHHHHHc----------CChhhHHHHHHHHHHhCC
Q 037592 275 AKKIMELKPDC---HLSYVLLDNVYRAV----------GRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 275 ~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~ 317 (337)
|+++++..|++ +..+..++.+|... |++++|...|+++.+...
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 99999999984 45788899999877 889999999999987553
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=8.6e-11 Score=83.45 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=76.0
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhc
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTT 264 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~ 264 (337)
+..+...+...|++++|..+++.+++.. +.+...+..++..+...|++++|..+++++ . .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3344445555555666665555554321 234445555555566666666666666543 1 12234455556666667
Q ss_pred CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.|++++|.+.++++.+..|++...+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777777777777777666666666777777777777777777777666543
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.33 E-value=8.3e-11 Score=107.20 Aligned_cols=169 Identities=9% Similarity=-0.047 Sum_probs=130.2
Q ss_pred HhhchhhhhHHHHHHHH--------HhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhC
Q 037592 94 AGLAALRLGKEVHCQYI--------RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQN 162 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 162 (337)
...|++++|.+.+++++ +..+ .+...+..+..++...|++++|+..|+++. +.+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888899999998888 4433 567788888889999999999999998877 44677888888899999
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
|++++|+..|++..+.... +...+..+..++.+.|++++ .+.|+++++.. +.+...+..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998885322 45667778888888999999 99999887643 44577888889999999999999999
Q ss_pred HHHh-cCCCc-hhHHHHHHHHHhcCCC
Q 037592 243 IENA-DCRHD-SSLWEVLLGACTTFRN 267 (337)
Q Consensus 243 ~~~~-~~~~~-~~~~~~l~~~~~~~g~ 267 (337)
|++. ...|+ ...+..+..++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9885 45554 4556666677766555
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.31 E-value=9.1e-11 Score=90.63 Aligned_cols=131 Identities=6% Similarity=-0.058 Sum_probs=97.6
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
...+..+|...|++++|+..|++..+..+ -+...+..+...+...|++++|...|+++++.. +.+..++..+..+|.
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 34488889999999999999999988632 256778888889999999999999999997653 446788888888887
Q ss_pred hcCC--hHHHHHHHHHhc-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 232 RAGL--LEEAETLIENAD-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 232 ~~g~--~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
..|+ .+.+...+++.. ..|....+.....++...|++++|+..|++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 445556666543 22223334445556777899999999999999999983
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=9.8e-12 Score=90.70 Aligned_cols=142 Identities=9% Similarity=-0.018 Sum_probs=95.6
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
...+...|++++|+..+++.... .| +...+..+...|.+.|++++|++.|+++++.. +-+..+|..+..+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 34445566777777777766542 22 23345556677777788888888887776542 445677777777888888
Q ss_pred ChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHH-HHHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 235 LLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERV-AKKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 235 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
++++|...|++. ...| +...|..+...|.+.|++++|.+. ++++++++|+++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888887763 3333 455677777778888887665544 578888888888888777777776664
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.31 E-value=1.9e-10 Score=93.50 Aligned_cols=177 Identities=7% Similarity=-0.041 Sum_probs=137.8
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 134 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
.+.....+....+.+...+..+...+...|++++|...|++..+... -+...+..+...+...|++++|...++.++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 44555566666656667788888889999999999999999888532 25567777888899999999999999988543
Q ss_pred cCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc--cch
Q 037592 214 YRIKPKIEHYN-CMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC--HLS 288 (337)
Q Consensus 214 ~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 288 (337)
.|+..... .....+...++.++|...+++. . .+.+...+..+...+...|++++|+..++++++.+|++ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 45544333 3333466778888888888864 3 33456778888889999999999999999999999987 778
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 289 YVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+..++.++...|+.++|...|++-..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999998887653
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.30 E-value=2e-11 Score=111.22 Aligned_cols=169 Identities=12% Similarity=-0.042 Sum_probs=143.0
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc
Q 037592 129 AKCGCVDFAHQIFLQMP-----------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197 (337)
Q Consensus 129 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 197 (337)
...|++++|++.+++.. +.+...+..+..+|...|++++|+..|+++.+... .+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 77899999999998875 44667899999999999999999999999988532 2567888888899999
Q ss_pred CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHH
Q 037592 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
|++++|...|+++++.. +.+...+..+..+|.+.|++++ .+.|++. ... .+...|..+..++.+.|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999997653 4467889999999999999999 9999874 333 35677888999999999999999999
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
+++.+++|++..++..++.++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999877555
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.30 E-value=3.3e-10 Score=80.33 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=101.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (337)
.|..++..+...|++++|..+++++.+.+. .+...+..+...+...|++++|...++++.... +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 466777888888888888888888877532 355667777778888888888888888886542 44567778888888
Q ss_pred HhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 231 GRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
...|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8899999999888874 2 2335667777888888999999999999998888776
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.27 E-value=7.6e-09 Score=84.03 Aligned_cols=225 Identities=11% Similarity=-0.050 Sum_probs=153.9
Q ss_pred CChhHHHHHHHHHhh--cCcc-cHHHHHHHHHhhc--hhhhhHHHHHHHHHhhCCCCchhHHHHHHHH----Hhc---CC
Q 037592 66 GDFESVIRIFREMEE--IDLF-SFGIVLRACAGLA--ALRLGKEVHCQYIRRSGCKDVIIESALVDLY----AKC---GC 133 (337)
Q Consensus 66 g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 133 (337)
...++|+.+++++.. |+.. +|+.-..++...+ ++++++..++.++..++ .+..+|+.-..++ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCC
Confidence 334577777777776 4333 3555555666666 77777777777777665 4555665544444 444 67
Q ss_pred HHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHh--HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc------hhh
Q 037592 134 VDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGE--EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL------IDR 202 (337)
Q Consensus 134 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~------~~~ 202 (337)
+++++.+++++. +.+..+|+.-.-.+...|.++ ++++.++++.+..+. |...|+.-.....+.+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 788888887776 446677777777777777777 888888888886544 66666655555555555 788
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHhc-----CCCchhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE-AETLIENAD-----CRHDSSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
+++.++.++... +-|...|+.+...+.+.|+... +..+.+++- ...++..+..+...+.+.|+.++|.++++
T Consensus 205 El~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888887653 5678888888888888877444 445666531 12355667777788888888888888888
Q ss_pred HHHh-cCCCccchHHHHHH
Q 037592 277 KIME-LKPDCHLSYVLLDN 294 (337)
Q Consensus 277 ~~~~-~~p~~~~~~~~l~~ 294 (337)
.+.+ .+|.....|...+.
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 8886 78887666665443
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.27 E-value=1.4e-10 Score=89.60 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHcc
Q 037592 26 SLVDMYGKCGLVDESHRVFDKML 48 (337)
Q Consensus 26 ~l~~~~~~~~~~~~A~~~~~~~~ 48 (337)
.....+...|++++|+..|++.+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al 31 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTI 31 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445556666666666666653
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.27 E-value=5.5e-10 Score=91.76 Aligned_cols=218 Identities=10% Similarity=0.019 Sum_probs=150.7
Q ss_pred cCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 037592 64 QTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141 (337)
Q Consensus 64 ~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 141 (337)
..|++++|.+++++..+ +.. + +...++++.|...|.++ ...|...|++++|...|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 45677888888887766 321 0 11145666666666554 45677889999888888
Q ss_pred hcCCC-----Cc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCC---CCC--HhHHHHHHHHHhhcCchhhHHHHH
Q 037592 142 LQMPV-----RN----LITWNSMISGFAQNGRGEEALRIFDDMTEGGT---KPD--HVSFIGVLSACSHMGLIDRGRKHF 207 (337)
Q Consensus 142 ~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~ 207 (337)
.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|+..+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 77651 11 34788888999999999999999998765311 111 3466677778888 9999999999
Q ss_pred HHHHHhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHh-cC------CCc-hhHHHHHHHHHhcCCChhHHHHHH
Q 037592 208 ASMTKEYRIKP----KIEHYNCMVDLLGRAGLLEEAETLIENA-DC------RHD-SSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 208 ~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
++++....-.. ...++..+...|...|++++|+..|++. .. .+. ...+..+..++...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98865321111 1467888899999999999999999874 11 111 224556667788889999999999
Q ss_pred HHHHhcCCCccch-----HHHHHHHHHHcCChhhHHH
Q 037592 276 KKIMELKPDCHLS-----YVLLDNVYRAVGRWNDAFK 307 (337)
Q Consensus 276 ~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 307 (337)
+++. ..|+...+ ...++.++ ..|+.+.+..
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999 88875432 33445555 5577666555
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.27 E-value=7.6e-10 Score=85.67 Aligned_cols=162 Identities=10% Similarity=-0.012 Sum_probs=90.5
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC----chhhHHHHHHHHHHhcCCCCCHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG----LIDRGRKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (337)
++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|+...+ .-++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHHH
Confidence 34444445555555555555555555555543 23344444444444 4 56666666666532 1244455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHhc-CCCc---hhHHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCccchHHH
Q 037592 224 NCMVDLLGR----AGLLEEAETLIENAD-CRHD---SSLWEVLLGACTT----FRNAHVAERVAKKIMELKPDCHLSYVL 291 (337)
Q Consensus 224 ~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 291 (337)
..|...|.. .+++++|.++|++.- ..|. +..+..|...|.. .+++++|+.+|+++.+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 555555555 556666666666542 2221 4555555555555 56677777777777666 333556666
Q ss_pred HHHHHHHc-C-----ChhhHHHHHHHHHHhCCc
Q 037592 292 LDNVYRAV-G-----RWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 292 l~~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 318 (337)
|..+|... | ++++|...|++..+.|..
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 66666543 2 677777777776666543
No 103
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.26 E-value=2e-08 Score=90.55 Aligned_cols=166 Identities=7% Similarity=-0.069 Sum_probs=98.9
Q ss_pred hHHHHHHHHHhCCCHhHHH-HHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhc---------CCCC--
Q 037592 151 TWNSMISGFAQNGRGEEAL-RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY---------RIKP-- 218 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~-- 218 (337)
.|...+..+...|+.++|. .+|++.... ++.+...+...+....+.|+++.|..+|+.++... +.+.
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 3444444445566666775 777777654 33344445555666666777777777777775421 1111
Q ss_pred ---------CHHHHHHHHHHHHhcCChHHHHHHHHHhcCC-C--chhHHHHHHHHHhcC-CChhHHHHHHHHHHhcCCCc
Q 037592 219 ---------KIEHYNCMVDLLGRAGLLEEAETLIENADCR-H--DSSLWEVLLGACTTF-RNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 219 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~ 285 (337)
...+|...+....+.|..+.|..+|++.... | ....|...+....+. ++++.|.++|+.+++..|++
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 1235666666666777777777777764211 1 122233222222233 44777777777777777776
Q ss_pred cchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 286 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+..+...+......|+.+.|..+|++......
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 66666777777777777777777777665443
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.24 E-value=5.2e-10 Score=83.85 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
+..+...+.+.|++++|+..|++.. +.+...+..+...+...|++++|+..|++...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 4445556666677777777776666 23455666666666677777777777666654
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.24 E-value=3.1e-10 Score=101.50 Aligned_cols=160 Identities=8% Similarity=-0.048 Sum_probs=122.0
Q ss_pred cCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHH
Q 037592 131 CGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 207 (337)
.|++++|+..+++.. +.+...+..+...|...|++++|...|++..+... .+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999887 33577899999999999999999999999988532 25667888889999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcC---CChhHHHHHHHHHHhcC
Q 037592 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTF---RNAHVAERVAKKIMELK 282 (337)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 282 (337)
+++++.. +.+...+..+..+|...|++++|.+.+++. ... .+...+..+..++... |++++|.+.++++.+..
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9997653 456788999999999999999999999974 333 3566788888888888 99999999999999999
Q ss_pred CCccchHHHHH
Q 037592 283 PDCHLSYVLLD 293 (337)
Q Consensus 283 p~~~~~~~~l~ 293 (337)
|++...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99877777665
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.24 E-value=4.1e-10 Score=84.44 Aligned_cols=159 Identities=8% Similarity=0.003 Sum_probs=99.8
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC--CcHHhHHHHHHH-HHh
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--RNLITWNSMISG-FAQ 161 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~-~~~ 161 (337)
.+......+...|++++|...++++++..+ .+...+..+..++...|++++|+..+++... |+...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 345566677778888888888888877765 5677888888888889999999999888872 333333222211 112
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
.++..+|+..+++..+..+ .+...+..+...+...|++++|...++++++...-..+...+..++.++...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2223345666666666421 134556666666777777777777777765331111124466666677777777777766
Q ss_pred HHHH
Q 037592 242 LIEN 245 (337)
Q Consensus 242 ~~~~ 245 (337)
.|++
T Consensus 166 ~y~~ 169 (176)
T 2r5s_A 166 KYRR 169 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.23 E-value=2.8e-10 Score=88.13 Aligned_cols=138 Identities=13% Similarity=0.008 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC-ChhhHHHHHHHHHcCC----ChhHHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-NSVSSSALLQGYCQTG----DFESVIRIFRE 77 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g----~~~~A~~~~~~ 77 (337)
++|.+.|+...+.| +...+..|...|...+++++|+..|++.... ++..+..|...|.. + ++++|+++|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35677777777764 6667777777777788888888888777544 56667777777766 5 67777777777
Q ss_pred Hhh-cCcccHHHHHHHHHh----hchhhhhHHHHHHHHHhhCC-CCchhHHHHHHHHHh----cCCHHHHHHHHhcC
Q 037592 78 MEE-IDLFSFGIVLRACAG----LAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAK----CGCVDFAHQIFLQM 144 (337)
Q Consensus 78 ~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 144 (337)
..+ -+..++..+...+.. .+++++|..+|++..+.+.. .....+..|..+|.. .+++++|+..|++.
T Consensus 79 A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 655 233344444444444 44555555555555544321 013344444444444 34444444444443
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.23 E-value=8.3e-10 Score=89.71 Aligned_cols=156 Identities=9% Similarity=-0.063 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH-HHH
Q 037592 119 IIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL-SAC 194 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~ 194 (337)
..+..+...+...|++++|+..|++.. +.+...+..+...+...|++++|...++++... .|+........ ..+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHH
Confidence 333444444444444444444444443 223344444444444455555555544444332 22222111111 123
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc---hhHHHHHHHHHhcCCChhH
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD---SSLWEVLLGACTTFRNAHV 270 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~ 270 (337)
...++.+.|...+++++... +.+...+..+...|...|++++|...|+++ ...|+ ...+..++..+...|+.++
T Consensus 196 ~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 33444444444444443321 233444445555555555555555555442 11121 3344444555555555555
Q ss_pred HHHHHHHH
Q 037592 271 AERVAKKI 278 (337)
Q Consensus 271 a~~~~~~~ 278 (337)
|...+++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.22 E-value=1.4e-09 Score=85.10 Aligned_cols=178 Identities=8% Similarity=-0.056 Sum_probs=119.3
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHccc--CC----hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcc----cHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLK--KN----SVSSSALLQGYCQTGDFESVIRIFREMEE--IDLF----SFG 87 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 87 (337)
+...+..+...+.+.|++++|+..|++++. |+ ...+..++.++.+.|++++|+..|+++.+ |+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556677888999999999999999843 32 24678888999999999999999999988 6553 344
Q ss_pred HHHHHHHh------------------hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH
Q 037592 88 IVLRACAG------------------LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149 (337)
Q Consensus 88 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 149 (337)
.+..++.. .|++++|...|+++++..+ .+......+.... ...... .
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a~~~l~----~~~~~~----------~ 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDATKRLV----FLKDRL----------A 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHHHHHHH----HHHHHH----------H
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHHHHHHH----HHHHHH----------H
Confidence 44555443 4677888888888777643 2233322211110 000000 0
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD--HVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
.....+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+.++|.+.++.+..
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 1123456778888999999999998887532211 13566777888889999999998888754
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.22 E-value=9.6e-10 Score=90.29 Aligned_cols=217 Identities=9% Similarity=-0.066 Sum_probs=144.1
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
+++|.+++++..+.. +.+ .+...+++++|...|++. +..|...|++++|.+.|.+..+
T Consensus 7 ~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~ 65 (307)
T 2ifu_A 7 ISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEA 65 (307)
T ss_dssp HHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 567888888877642 111 011147777777777654 4567777888888888887766
Q ss_pred -c---C----cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCC-----CchhHHHHHHHHHhcCCHHHHHHHHhcCCC-
Q 037592 81 -I---D----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-----DVIIESALVDLYAKCGCVDFAHQIFLQMPV- 146 (337)
Q Consensus 81 -~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 146 (337)
+ + ..+|..+..+|...|++++|...+++.++..... ...++..+..+|.. |++++|+..|++...
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 1 1 2356777777888888888888888877653221 13567778888877 888888888877661
Q ss_pred ----Cc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhc----CCCCC-HhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 147 ----RN----LITWNSMISGFAQNGRGEEALRIFDDMTEG----GTKPD-HVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 147 ----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
.+ ..+++.+...|...|++++|+..|++..+. +..+. ...+..+..++...|++++|...|++.+ .
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 11 356778888889999999999999888763 11111 1255556667777899999999998886 3
Q ss_pred cCCCCC---HHHHHHHHHHHHhcCChHHHHHH
Q 037592 214 YRIKPK---IEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 214 ~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
..-.++ ......++..+ ..|+.+.+.++
T Consensus 224 ~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 224 IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 211112 12344555555 56777777764
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=1.3e-10 Score=84.64 Aligned_cols=138 Identities=12% Similarity=0.034 Sum_probs=63.3
Q ss_pred HHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHH
Q 037592 93 CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEAL 169 (337)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 169 (337)
+...|++++|+..+++.....+ .+...+..+..+|.+.|++++|++.|++.. +.+..+|..+..+|...|++++|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHH
Confidence 3344455555555544443322 223333445555555555555555555444 224445555555555555555555
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH-FASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 170 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
..|++..+..+. +...+..+...+.+.|++++|.+. ++++++.. |-++.+|......+...|
T Consensus 86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 555555553211 334444455555555555444333 34443321 223444444444444333
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=9.1e-09 Score=83.59 Aligned_cols=226 Identities=13% Similarity=0.148 Sum_probs=175.3
Q ss_pred hhch-hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC--CHHHHHHHHhcCC---CCcHHhHHHHHHHH----HhC--
Q 037592 95 GLAA-LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG--CVDFAHQIFLQMP---VRNLITWNSMISGF----AQN-- 162 (337)
Q Consensus 95 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~-- 162 (337)
+.+. .++|+..+.+++..++ .+..+|+.-..++...| ++++++.+++.+. +.+..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 44 KAEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HcCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 3444 4689999999999876 67788888888888888 9999999999887 34556776655554 445
Q ss_pred -CCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchh--hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----
Q 037592 163 -GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID--RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL---- 235 (337)
Q Consensus 163 -~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 235 (337)
+++++++.+++++.+...+ +..+|+.-.-.+.+.|.++ ++++.++.+++.. +-|-..|+.-...+...|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchh
Confidence 7899999999999986443 6677776666667788888 9999999998764 5677888877777777776
Q ss_pred --hHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhH-HHHHHHHHHhcC---CCccchHHHHHHHHHHcCChhhHHH
Q 037592 236 --LEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHV-AERVAKKIMELK---PDCHLSYVLLDNVYRAVGRWNDAFK 307 (337)
Q Consensus 236 --~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~ 307 (337)
++++++.+++. . .+.|...|+.+...+.+.|+... +..++.++.+.+ |.++.++..++.+|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 88888888863 3 34477789888888888887544 566777777665 7778899999999999999999999
Q ss_pred HHHHHHHhCCccCCCCcc
Q 037592 308 IRTLMKYSGVKKMPGKSW 325 (337)
Q Consensus 308 ~~~~m~~~~~~~~~~~~~ 325 (337)
+++.+.+ .+.|.....|
T Consensus 280 ~~~~l~~-~~Dpir~~yW 296 (306)
T 3dra_A 280 VYDLLKS-KYNPIRSNFW 296 (306)
T ss_dssp HHHHHHH-TTCGGGHHHH
T ss_pred HHHHHHh-ccChHHHHHH
Confidence 9999764 2334344444
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.20 E-value=7.9e-10 Score=98.87 Aligned_cols=147 Identities=10% Similarity=-0.050 Sum_probs=110.7
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHH
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIF 172 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (337)
.|++++|...++++++..+ .+...+..+...+...|++++|++.+++.. +.+...+..+..+|...|++++|...|
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999999988765 567889999999999999999999999876 345778999999999999999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHh
Q 037592 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA---GLLEEAETLIENA 246 (337)
Q Consensus 173 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 246 (337)
++..+... .+...+..+..++...|++++|.+.++++++.. +.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 99988632 356788888899999999999999999997653 44678888999999999 9999999999874
No 114
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.18 E-value=4.8e-09 Score=94.54 Aligned_cols=212 Identities=8% Similarity=-0.018 Sum_probs=152.8
Q ss_pred HHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhH-HHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 037592 71 VIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGK-EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146 (337)
Q Consensus 71 A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (337)
+..+|+++.. | +...|...+..+...|+.++|. .+|++.+...+ .+...|...+....+.|++++|.++|+++..
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4456666665 3 3345666666677778888886 99999887543 5666777788888889999999999888762
Q ss_pred -------------Cc------------HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc-Cch
Q 037592 147 -------------RN------------LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM-GLI 200 (337)
Q Consensus 147 -------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~ 200 (337)
|+ ...|...+....+.|+.+.|..+|.++.+.-..+....|...+..-.+. ++.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 21 2357777777778888999999999988751111223333322222233 458
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC----chhHHHHHHHHHhcCCChhHHHHHH
Q 037592 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH----DSSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
+.|.++|+..++.. +.+...+...+......|+.+.|..+|++. ...| ....|...+..-.+.|+.+.+.++.
T Consensus 487 e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 487 KTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988764 456667778888888889999999999974 3233 3456888888888899999999999
Q ss_pred HHHHhcCCCc
Q 037592 276 KKIMELKPDC 285 (337)
Q Consensus 276 ~~~~~~~p~~ 285 (337)
+++.+..|++
T Consensus 565 ~R~~~~~P~~ 574 (679)
T 4e6h_A 565 KRFFEKFPEV 574 (679)
T ss_dssp HHHHHHSTTC
T ss_pred HHHHHhCCCC
Confidence 9999988885
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.12 E-value=2.4e-08 Score=81.27 Aligned_cols=163 Identities=9% Similarity=-0.040 Sum_probs=121.9
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCC-CCCHh----HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC----HHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGT-KPDHV----SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK----IEH 222 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 222 (337)
+...+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++.++....-.++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33346778899999999999999887422 22211 2334556677788999999999999763222233 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhc--------CCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC------ccc
Q 037592 223 YNCMVDLLGRAGLLEEAETLIENAD--------CRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD------CHL 287 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 287 (337)
++.++.+|...|++++|...|++.- ..+. ..++..+...|.+.|++++|+..+++++++.+. -..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8899999999999999999998641 1122 236777888899999999999999999874322 256
Q ss_pred hHHHHHHHHHHcCC-hhhHHHHHHHHHH
Q 037592 288 SYVLLDNVYRAVGR-WNDAFKIRTLMKY 314 (337)
Q Consensus 288 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 314 (337)
+|..++.+|...|+ +++|...+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999999995 5999999988765
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.12 E-value=1.2e-09 Score=79.33 Aligned_cols=97 Identities=10% Similarity=-0.077 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
...+..+...+.+.|++++|...|++. .. +.+...|..+..+|...|++++|+..|+++.+++|+++..|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456667777778888888888888764 22 3356667777778888888888888888888888888888888888888
Q ss_pred HcCChhhHHHHHHHHHHhC
Q 037592 298 AVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 298 ~~g~~~~A~~~~~~m~~~~ 316 (337)
..|++++|...|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877754
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.11 E-value=1e-08 Score=79.14 Aligned_cols=124 Identities=12% Similarity=-0.075 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCch
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 200 (337)
+..+...+...|++++|+..|++...++...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34556667777777777777777776677777777777777777777777777776653 22455666666777777777
Q ss_pred hhHHHHHHHHHHhcCCCC--------------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 201 DRGRKHFASMTKEYRIKP--------------KIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
++|...++.+++...-.+ ....+..+..+|...|++++|.+.|++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 777777777754321111 114444555555555555555555554
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=1e-07 Score=83.20 Aligned_cols=174 Identities=10% Similarity=-0.025 Sum_probs=96.2
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCC-hHHHHHHHHHccc------CChhhHHHHHHHHH----cCCChhH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLK------KNSVSSSALLQGYC----QTGDFES 70 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~------~~~~~~~~l~~~~~----~~g~~~~ 70 (337)
++.+.++|+..+.. .|++..|...+....+.+. .+....+|+..+. .+...|...+..+. .+|+.+.
T Consensus 30 ~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 30 YRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp HHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 56788888888875 5788888888887777663 3556667776532 25567777776544 2456778
Q ss_pred HHHHHHHHhh-cCcccHHHHHHHHH-----------------hhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 037592 71 VIRIFREMEE-IDLFSFGIVLRACA-----------------GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132 (337)
Q Consensus 71 A~~~~~~~~~-~~~~~~~~l~~~~~-----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 132 (337)
+.++|+++.. |... +..+-..|. ..+.+..|..+++++...-...+...|...+..-...+
T Consensus 108 vR~iy~rAL~~P~~~-~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~ 186 (493)
T 2uy1_A 108 IRNGYMRALQTPMGS-LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG 186 (493)
T ss_dssp HHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHhChhhh-HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence 8888888877 3221 111111111 11223334444444433211112334444443322110
Q ss_pred --C-----HHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 133 --C-----VDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 133 --~-----~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
- .+.+..+|+++. +.+...|...+..+.+.|+.++|..+|++....
T Consensus 187 ~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 187 MKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 0 233455666554 234556666666667777777777777777765
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.09 E-value=3.8e-10 Score=91.38 Aligned_cols=189 Identities=8% Similarity=-0.099 Sum_probs=101.2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
...+..+...+.+.|++++|+..|++.. +.+...|..+..+|...|++++|+..+++..+... .+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3444555556666666666666665554 22455566666666666666666666666655321 2344555556666
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHH
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKP---KIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 271 (337)
...|++++|...++.+++...-.+ ....+..+ ...+...+.. .......++......+ ..+. .|++++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 666666666666666543311000 01111111 1111111111 1112222333322222 2222 5788888
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHc-CChhhHHHHHHHHHHh
Q 037592 272 ERVAKKIMELKPDCHLSYVLLDNVYRAV-GRWNDAFKIRTLMKYS 315 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 315 (337)
++.++++.+.+|++......+...+.+. +.+++|.++|++..+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888888888766666666555555 6678888888877654
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.09 E-value=4.2e-09 Score=74.08 Aligned_cols=107 Identities=10% Similarity=0.001 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACT 263 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~ 263 (337)
.+......+.+.|++++|++.|+++++.. +.+..+|..+..+|.+.|++++|+..+++. .. +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 34445555666666666666666665432 334556666666666666666666666652 22 223455666666666
Q ss_pred cCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
..|++++|++.|+++++++|++..++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 6667777777777766666666655555443
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.09 E-value=3.9e-09 Score=81.50 Aligned_cols=141 Identities=8% Similarity=-0.112 Sum_probs=91.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhch
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAA 98 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 98 (337)
..+..+...+...|++++|+..|++...++...|..+..++...|++++|++.|++..+ | +...+..+..++...|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 34556677777888888888888888777777888888888888888888888887776 3 33456666667777777
Q ss_pred hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 99 LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
+++|...++++++..+......+.. .|. .........+..+..+|...|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~-------~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKI-------LGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGG-------GTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHH-------hcc---------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777766543211111000 000 000112356666777777777777777777777664
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.06 E-value=8.7e-09 Score=75.98 Aligned_cols=127 Identities=8% Similarity=-0.058 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACT 263 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~ 263 (337)
.+..+...+...|++++|...++.++... +.+..++..+..++...|++++|...+++. .. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44555666677788888888887776542 445677777788888888888888888763 22 334566777888888
Q ss_pred cCCChhHHHHHHHHHHhcCCCccchHHHHHHH--HHHcCChhhHHHHHHHHHH
Q 037592 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNV--YRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 314 (337)
..|++++|...++++.+..|++...+..+..+ +...|++++|+..+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999877777544444 7788999999999887654
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.05 E-value=2.4e-08 Score=81.37 Aligned_cols=87 Identities=11% Similarity=0.047 Sum_probs=43.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh--cCcc-------cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC-----chhHHH
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE--IDLF-------SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD-----VIIESA 123 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~--~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 123 (337)
.+..+...|++++|.+++++..+ +... .+..+...+...+++++|...++++++.....+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777777777777777665 1111 112234444445556666666666655322211 113444
Q ss_pred HHHHHHhcCCHHHHHHHHhcC
Q 037592 124 LVDLYAKCGCVDFAHQIFLQM 144 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~ 144 (337)
+..+|...|++++|+..|+++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 444444445544444444433
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.04 E-value=8.2e-09 Score=84.09 Aligned_cols=157 Identities=8% Similarity=-0.024 Sum_probs=94.0
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCC-----chhHHHHHHHHHhcCCHHHHHHHHhcCCC-----Cc----HHhHHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKD-----VIIESALVDLYAKCGCVDFAHQIFLQMPV-----RN----LITWNS 154 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 154 (337)
.+..+...|++++|.+.+.+.++...... ...+..+...+...|++++|+..+++... .+ ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 33444455555555555555444322111 12233455566677777777777665431 11 346777
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHhc-CCCCC-----HhHHHHHHHHHhhcCchhhHHHHHHHHHHhc---CCCC-CHHHHH
Q 037592 155 MISGFAQNGRGEEALRIFDDMTEG-GTKPD-----HVSFIGVLSACSHMGLIDRGRKHFASMTKEY---RIKP-KIEHYN 224 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~ 224 (337)
+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|...+++.++.. +... -..++.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 778888888888888888777621 01111 1466677777888888888888888775431 1111 156777
Q ss_pred HHHHHHHhcCChHHH-HHHHHH
Q 037592 225 CMVDLLGRAGLLEEA-ETLIEN 245 (337)
Q Consensus 225 ~l~~~~~~~g~~~~A-~~~~~~ 245 (337)
.+..+|.+.|++++| ...+++
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 788888888888888 665654
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.04 E-value=1.9e-08 Score=81.92 Aligned_cols=164 Identities=9% Similarity=-0.028 Sum_probs=111.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH-----hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCC--CCC--HH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH-----VSFIGVLSACSHMGLIDRGRKHFASMTKEYRI--KPK--IE 221 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~ 221 (337)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++.++..... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667778888888888888877764322111 12333445566778888888888887643111 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh----cCCCc-----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC------cc
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIENA----DCRHD-----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD------CH 286 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 286 (337)
+++.++..|...|++++|...|++. ...|+ ..++..+...|...|++++|+..+++++++.++ ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888888888888888888763 11122 246777778888999999999999888774322 14
Q ss_pred chHHHHHHHHHHcCChhhH-HHHHHHHHH
Q 037592 287 LSYVLLDNVYRAVGRWNDA-FKIRTLMKY 314 (337)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 314 (337)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5778888899999999998 676776543
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.03 E-value=6.6e-09 Score=73.06 Aligned_cols=101 Identities=13% Similarity=0.076 Sum_probs=89.2
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHH
Q 037592 216 IKPK-IEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292 (337)
Q Consensus 216 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 292 (337)
+.|+ ...+...+..|.+.|++++|++.|++. .. +.+...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 456778899999999999999999974 33 34677888899999999999999999999999999999999999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHhC
Q 037592 293 DNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 293 ~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+.++...|++++|...|++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999998854
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.00 E-value=2.4e-08 Score=69.53 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHH
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGAC 262 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~ 262 (337)
..+..+...+...|++++|.+.+++++... +.+..++..++..+...|++++|..+++++ . .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 455556666677777777777777775432 345566677777777777777777777763 1 233455677777778
Q ss_pred hcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
...|++++|...++++.+..|+++..+..+..++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888887777777776665543
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.00 E-value=1.6e-09 Score=78.56 Aligned_cols=93 Identities=11% Similarity=-0.073 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHc
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 299 (337)
.+..+...+...|++++|...|++. . .+.+...|..+..++...|++++|+..|+++++++|+++..+..++.+|...
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3334444444444444444444432 1 1123333444444444444444444444444444444444444444444444
Q ss_pred CChhhHHHHHHHHHH
Q 037592 300 GRWNDAFKIRTLMKY 314 (337)
Q Consensus 300 g~~~~A~~~~~~m~~ 314 (337)
|++++|...|++..+
T Consensus 103 g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 103 GELAEAESGLFLAQE 117 (148)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555444444443
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.00 E-value=5e-09 Score=78.43 Aligned_cols=124 Identities=12% Similarity=0.082 Sum_probs=73.9
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCh--
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL-LGRAGLL-- 236 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 236 (337)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 44566777777777666642 2244566666666677777777777777765542 3345566666666 5566666
Q ss_pred HHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc
Q 037592 237 EEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286 (337)
Q Consensus 237 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 286 (337)
++|...+++. ...| +...+..+...+...|++++|...++++.+..|+++
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 7777776653 2222 344555666666777777777777777777666653
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.00 E-value=1.9e-08 Score=70.69 Aligned_cols=116 Identities=12% Similarity=-0.030 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHH
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGAC 262 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~ 262 (337)
..+..+...+...|++++|...++.++... +.+...+..+...+...|++++|...+++. .. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 445556666677777777777777775542 345667777777777788888888777763 22 23455677777788
Q ss_pred hcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCCh
Q 037592 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 302 (337)
...|++++|...++++.+..|+++..+..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888889999999888888888888888888888887765
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.99 E-value=3.3e-09 Score=81.18 Aligned_cols=144 Identities=9% Similarity=-0.064 Sum_probs=69.1
Q ss_pred HhcCChHHHHH---HHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---------cCcccHHHHHHHHHhhchh
Q 037592 32 GKCGLVDESHR---VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE---------IDLFSFGIVLRACAGLAAL 99 (337)
Q Consensus 32 ~~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~ 99 (337)
...|++++|.+ .+..-+.....++..+...+...|++++|...+++... ....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34667777777 44332222345566667777777777777777776654 0112344444555555555
Q ss_pred hhhHHHHHHHHHhhCC-C-----CchhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCc----HHhHHHHHHHHHhCCC
Q 037592 100 RLGKEVHCQYIRRSGC-K-----DVIIESALVDLYAKCGCVDFAHQIFLQMP-----VRN----LITWNSMISGFAQNGR 164 (337)
Q Consensus 100 ~~a~~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~ 164 (337)
++|...+++.++.... + ...++..+...+...|++++|...+++.. ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 5555555555443100 1 12234444555555555555555544433 011 1123344444445555
Q ss_pred HhHHHHHHHHH
Q 037592 165 GEEALRIFDDM 175 (337)
Q Consensus 165 ~~~a~~~~~~m 175 (337)
+++|...+++.
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.98 E-value=1.6e-08 Score=71.45 Aligned_cols=115 Identities=13% Similarity=0.045 Sum_probs=72.3
Q ss_pred HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHH
Q 037592 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGA 261 (337)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~ 261 (337)
...+..+...+...|++++|...++.+++. .+.+...+..+..++...|++++|...+++. . .+.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344555555666666666666666666432 1234556666666666666666666666653 2 22244556666667
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 262 CTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
+...|++++|+..++++.+..|.+...+..+..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 777777777777777777777776677777777666554
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.98 E-value=1.8e-08 Score=80.08 Aligned_cols=181 Identities=9% Similarity=-0.069 Sum_probs=99.9
Q ss_pred cCCChhHHHHHHHHHhh--cC-cccHHHH-------HHHHHhhchhhhhHHHHHHHHHhhCCC-----C-----------
Q 037592 64 QTGDFESVIRIFREMEE--ID-LFSFGIV-------LRACAGLAALRLGKEVHCQYIRRSGCK-----D----------- 117 (337)
Q Consensus 64 ~~g~~~~A~~~~~~~~~--~~-~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~----------- 117 (337)
..++...|.+.|.++.+ |+ ...|..+ ..++...++..+++..+...+...+.. +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57778888888888777 33 2356655 456666666666666666655521100 0
Q ss_pred ----chhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC--HhHHHH
Q 037592 118 ----VIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD--HVSFIG 189 (337)
Q Consensus 118 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ 189 (337)
....-.+...+...|++++|.+.|+.+. .|+......+...+.+.+++++|+..|+...... .|. ...+..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHH
Confidence 1122334556666777777777777665 3332244555556666677777777766443321 110 123444
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPK--IEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
+..++...|++++|+..|++.... ...|. .........++.+.|+.++|..+|+++
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666321 11132 234445555566666666666666654
No 134
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.97 E-value=5e-07 Score=74.28 Aligned_cols=173 Identities=8% Similarity=-0.017 Sum_probs=120.4
Q ss_pred HHHHcCCChhHHHHHHHHHhh--cCcc-cHHHHHHHHHhhc-hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc-C-C
Q 037592 60 QGYCQTGDFESVIRIFREMEE--IDLF-SFGIVLRACAGLA-ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC-G-C 133 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 133 (337)
....+.+..++|+++++++.. |+.. +|+.-..++...+ .+++++..++.++...+ .+..+|+.-..++.+. + +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCC
Confidence 334455566788888888888 4433 4566666666667 58888888888888766 6677777776666666 6 7
Q ss_pred HHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCCHh--------HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc---
Q 037592 134 VDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGE--------EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL--- 199 (337)
Q Consensus 134 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--- 199 (337)
+++++++++++.. .+..+|+...-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 8888888888873 35566666555555545555 888888888886543 66777776666666665
Q ss_pred ----hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 037592 200 ----IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236 (337)
Q Consensus 200 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (337)
++++++.++.++... +-|...|+.+-..+.+.|+.
T Consensus 220 ~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCC
Confidence 677888888876643 55677887777667666653
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.97 E-value=2.1e-08 Score=79.75 Aligned_cols=190 Identities=10% Similarity=-0.079 Sum_probs=101.9
Q ss_pred hhchhhhhHHHHHHHHHhhCCCCchhHHHH-------HHHHHhcCCHHHHHHHHhcCCC--C-------c----------
Q 037592 95 GLAALRLGKEVHCQYIRRSGCKDVIIESAL-------VDLYAKCGCVDFAHQIFLQMPV--R-------N---------- 148 (337)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~-------~---------- 148 (337)
..++...|.+.|.++....+ .....|..+ ...+.+.++..+++..+.+-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 46677777777777777654 445566655 3444444444444444433331 1 1
Q ss_pred -----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC----
Q 037592 149 -----LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK---- 219 (337)
Q Consensus 149 -----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 219 (337)
...+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .|+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccH
Confidence 112233455566666666666666666543 23333333344455566666666666654421 121
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhcCC---Cc--hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENADCR---HD--SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 292 (337)
...+..+..++...|++++|+..|++.... |. .........++.+.|+.++|..+|+++...+|+ ...+..|
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 224555666666666666666666654211 21 223344445566666666666666666666666 4444443
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.97 E-value=1.6e-08 Score=84.00 Aligned_cols=95 Identities=12% Similarity=-0.009 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
...|..+..+|.+.|++++|+..+++. .. +.+...|..+..+|...|++++|+..|++++++.|++..++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888889999999999999999874 33 3366778888899999999999999999999999999999999999999
Q ss_pred HcCChhhH-HHHHHHHHH
Q 037592 298 AVGRWNDA-FKIRTLMKY 314 (337)
Q Consensus 298 ~~g~~~~A-~~~~~~m~~ 314 (337)
..|++++| ...|+.|..
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999998 446666653
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=5.1e-09 Score=84.73 Aligned_cols=95 Identities=6% Similarity=-0.108 Sum_probs=64.0
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRAC 93 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 93 (337)
+...+..+...+.+.|++++|+..|++.+ .| +...|..+..+|.+.|++++|+..+++..+ | +...+..+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556666777777777777777777763 23 566677777777777777777777777766 3 234556666667
Q ss_pred HhhchhhhhHHHHHHHHHhhC
Q 037592 94 AGLAALRLGKEVHCQYIRRSG 114 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~ 114 (337)
...|++++|...++++++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCc
Confidence 777777777777777666543
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.91 E-value=2.6e-08 Score=71.64 Aligned_cols=95 Identities=12% Similarity=-0.061 Sum_probs=44.7
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCC
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRN 267 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~ 267 (337)
+...+.+.|++++|...|+.++... +.+...|..+..+|...|++++|...|++. .. +.+...+..+..++...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 3344445555555555555554321 233444445555555555555555555442 11 1223334444444555555
Q ss_pred hhHHHHHHHHHHhcCCCcc
Q 037592 268 AHVAERVAKKIMELKPDCH 286 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~~~ 286 (337)
+++|+..|++++++.|+++
T Consensus 102 ~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 102 LDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 5555555555555444433
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.91 E-value=3.4e-08 Score=75.42 Aligned_cols=151 Identities=15% Similarity=0.057 Sum_probs=72.8
Q ss_pred hcCCHHHHHH---HHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc----CCCC-CHhHHHHHHHHHhhcCchh
Q 037592 130 KCGCVDFAHQ---IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG----GTKP-DHVSFIGVLSACSHMGLID 201 (337)
Q Consensus 130 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 201 (337)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443322223445555555666666666666666555441 1111 1233444455555666666
Q ss_pred hHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHhc------CCCc--hhHHHHHHHHHhcCCCh
Q 037592 202 RGRKHFASMTKEYRIKP-K----IEHYNCMVDLLGRAGLLEEAETLIENAD------CRHD--SSLWEVLLGACTTFRNA 268 (337)
Q Consensus 202 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~--~~~~~~l~~~~~~~g~~ 268 (337)
+|...+++.+....-.+ + ...+..+...+...|++++|...+++.- ..+. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666655543211111 1 2344555556666666666666655420 0111 12234445556666666
Q ss_pred hHHHHHHHHHHh
Q 037592 269 HVAERVAKKIME 280 (337)
Q Consensus 269 ~~a~~~~~~~~~ 280 (337)
++|...++++.+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=1e-08 Score=76.75 Aligned_cols=113 Identities=7% Similarity=0.047 Sum_probs=54.6
Q ss_pred cCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH-HHhcCCH--HHH
Q 037592 64 QTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL-YAKCGCV--DFA 137 (337)
Q Consensus 64 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 137 (337)
..|++++|+..+++..+ | +...+..+..++...|++++|...++++++..+ .+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34455555555555444 2 223444444555555555555555555555443 344444445554 4455555 555
Q ss_pred HHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 138 HQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 138 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
+..++++. +.+...+..+...|...|++++|...|+++.+
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555444 22344455555555555555555555555555
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.90 E-value=2.2e-09 Score=82.07 Aligned_cols=173 Identities=9% Similarity=-0.097 Sum_probs=100.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCch
Q 037592 124 LVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 200 (337)
.+......|+++++.+.++.... .....+..+...+...|++++|+..|++..+.. |+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~---------- 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ---------- 77 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH----------
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh----------
Confidence 34444555666666666654331 133456666777777777777777777776632 211100000
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
....-.. ......+..+..+|...|++++|...+++. . .+.+...+..+..++...|++++|+..|+++
T Consensus 78 -----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 78 -----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000000 001356777888888888999988888863 2 2335667788888899999999999999999
Q ss_pred HhcCCCccchHHHHHHHHHHcCChhhHH-HHHHHHHHhCC
Q 037592 279 MELKPDCHLSYVLLDNVYRAVGRWNDAF-KIRTLMKYSGV 317 (337)
Q Consensus 279 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~~ 317 (337)
.++.|++...+..+..++...++.+++. ..+..|...+.
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999998889999999998888888877 56666655443
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.90 E-value=1.8e-06 Score=70.63 Aligned_cols=226 Identities=12% Similarity=0.046 Sum_probs=131.4
Q ss_pred cCCChh-HHHHHHHHHhh--cCcc-cHHHHHHHHHhhch----------hhhhHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 037592 64 QTGDFE-SVIRIFREMEE--IDLF-SFGIVLRACAGLAA----------LRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129 (337)
Q Consensus 64 ~~g~~~-~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (337)
+.|.++ +|+.+++.+.. |+.. +|+.--.++...+. +++++.+++.++...+ .+..+|+.-.-++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHh
Confidence 344443 66777777766 3332 23332223322222 5677777888777665 56777777666666
Q ss_pred hcC--CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCC-HhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc------
Q 037592 130 KCG--CVDFAHQIFLQMP---VRNLITWNSMISGFAQNGR-GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM------ 197 (337)
Q Consensus 130 ~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------ 197 (337)
+.| .+++++.+++++. +.|..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc
Confidence 767 4788888887776 4466677777666677777 57888888888876443 566665554444433
Q ss_pred --------CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHh-cCCCchhHHHH
Q 037592 198 --------GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA-----------GLLEEAETLIENA-DCRHDSSLWEV 257 (337)
Q Consensus 198 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~~~~~~~~~ 257 (337)
+.++++++.+..++... +-|..+|+.+-..+.+. +.++++++.++++ ...|+. .|..
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l 275 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCL 275 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHH
Confidence 44677777777776543 55566676555444444 2345555555543 333443 2332
Q ss_pred HHH-----HHhcCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 258 LLG-----ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 258 l~~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
+.. +....|..++....+.++++++|....-|..+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 111 1223455566666666666666665444444433
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.90 E-value=4.3e-07 Score=74.63 Aligned_cols=227 Identities=12% Similarity=0.088 Sum_probs=161.8
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhC-C-CHhH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG-CVDFAHQIFLQMP---VRNLITWNSMISGFAQN-G-RGEE 167 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~-~~~~ 167 (337)
...+..++|+.++.+++..++ .+..+|+.-..++...| .+++++.+++.+. +.+..+|+.-...+... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 344455789999999999876 67788888888888888 5999999999887 44667888776666665 6 8899
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchh--------hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----
Q 037592 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID--------RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL---- 235 (337)
Q Consensus 168 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 235 (337)
++.+++++.+...+ +..+|+.-.-...+.|.++ ++++.++++++.. +-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccc
Confidence 99999999886433 6666665554555555555 8999999998754 5678899888888888776
Q ss_pred ---hHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCCh--------------------hHHHHHHHHHHhcC------CC
Q 037592 236 ---LEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNA--------------------HVAERVAKKIMELK------PD 284 (337)
Q Consensus 236 ---~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~ 284 (337)
++++++.+++. . .+.|...|+.+-..+.+.|+. .....+..++.... +.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 67888888763 3 334667787776666666554 22333333332222 45
Q ss_pred ccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcc
Q 037592 285 CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325 (337)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 325 (337)
++.+...|+..|.+.|+.++|.++++.+.+ ...|.....|
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~~yw 340 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRAGYW 340 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHHHHH
Confidence 577888999999999999999999999753 3444444444
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.90 E-value=2.7e-08 Score=69.81 Aligned_cols=93 Identities=12% Similarity=-0.003 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHc
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 299 (337)
.+..+...+.+.|++++|...|++. .. +.+...|..+..++...|++++|+..++++++++|+++..|..++.++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3344444455555555555555442 11 123344444555555555555555555555555555555555555555555
Q ss_pred CChhhHHHHHHHHHH
Q 037592 300 GRWNDAFKIRTLMKY 314 (337)
Q Consensus 300 g~~~~A~~~~~~m~~ 314 (337)
|++++|...|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555555544
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.88 E-value=1e-07 Score=69.02 Aligned_cols=99 Identities=9% Similarity=-0.022 Sum_probs=82.3
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHH
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGAC 262 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 262 (337)
..+..+...+.+.|++++|...|+.++... +.+...|..+..+|...|++++|...|++. ...| ++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 456667778889999999999999997653 456888899999999999999999999874 3333 466788888999
Q ss_pred hcCCChhHHHHHHHHHHhcCCCc
Q 037592 263 TTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
...|++++|+..|++++++.|++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999984
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.88 E-value=1.7e-08 Score=73.21 Aligned_cols=90 Identities=9% Similarity=-0.039 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 197 (337)
+..+...+.+.|++++|+..|++.. +.+...|..+..+|...|++++|+..|++...... .+...+..+..++...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3334444444444444444444433 22333444444444444444444444444444211 1223333344444444
Q ss_pred CchhhHHHHHHHHH
Q 037592 198 GLIDRGRKHFASMT 211 (337)
Q Consensus 198 ~~~~~a~~~~~~~~ 211 (337)
|++++|...|+.++
T Consensus 103 g~~~~A~~~~~~al 116 (148)
T 2vgx_A 103 GELAEAESGLFLAQ 116 (148)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 147
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.87 E-value=6.7e-08 Score=71.10 Aligned_cols=126 Identities=10% Similarity=-0.035 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (337)
.+..+...+...|++++|...|++..+... .+...+..+...+...|++++|...++.+++.. +.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 344444455555555555555555544321 133444444445555555555555555554321 23344455555555
Q ss_pred HhcCChHHHHHHHHHh-cCCC-chhHHHH--HHHHHhcCCChhHHHHHHHHHH
Q 037592 231 GRAGLLEEAETLIENA-DCRH-DSSLWEV--LLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
...|++++|...|++. ...| +...+.. ....+...|++++|+..+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 5555555555555542 1111 2222211 2222444555555555555443
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.86 E-value=2.6e-08 Score=67.93 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC--ccchHHHHHHHHH
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD--CHLSYVLLDNVYR 297 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 297 (337)
.+..+...+...|++++|...+++. . .+.+...+..+...+...|++++|+..++++.+..|+ +...+..++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 4444555555555555555555542 1 1223444555555566666666666666666666666 5666666666666
Q ss_pred Hc-CChhhHHHHHHHHHHhCC
Q 037592 298 AV-GRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 298 ~~-g~~~~A~~~~~~m~~~~~ 317 (337)
.. |++++|.+.+++......
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCC
T ss_pred HHhCCHHHHHHHHHHHhhccc
Confidence 66 666666666666655443
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.85 E-value=7.2e-08 Score=67.97 Aligned_cols=114 Identities=7% Similarity=-0.038 Sum_probs=83.9
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHH
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLR 91 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 91 (337)
+.+...+..+...+.+.|++++|+..|++.... +...+..+..++...|++++|++.++++.+ | +...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 445667788888888888888888888887432 566778888888888888888888888877 3 3456677777
Q ss_pred HHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 037592 92 ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 132 (337)
++...|++++|...+++.++..+ .+...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 78888888888888888877654 44556666666666554
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.85 E-value=2.2e-06 Score=70.06 Aligned_cols=219 Identities=11% Similarity=0.029 Sum_probs=157.2
Q ss_pred Hhhchhh-hhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC----------HHHHHHHHhcCC---CCcHHhHHHHHHHH
Q 037592 94 AGLAALR-LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC----------VDFAHQIFLQMP---VRNLITWNSMISGF 159 (337)
Q Consensus 94 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~ 159 (337)
.+.|.+. +|+.+...++..++ .+..+|+.--.++...+. +++++.+++.+. +.+..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4556554 79999999998876 566677765444444443 678888888876 45778888877777
Q ss_pred HhCC--CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc-hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---
Q 037592 160 AQNG--RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL-IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA--- 233 (337)
Q Consensus 160 ~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 233 (337)
...+ .+++++.+++++.+.... |..+|+.-.-.....|. ++++++.++.+++.. +-|...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhc
Confidence 7777 489999999999987544 66777766666667777 589999999998754 66788888777666654
Q ss_pred -----------CChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcC-----------CChhHHHHHHHHHHhcCCCccchH
Q 037592 234 -----------GLLEEAETLIENA-D-CRHDSSLWEVLLGACTTF-----------RNAHVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 234 -----------g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~ 289 (337)
+.++++++.+++. . .+.|...|+.+-..+... +.++++++.++++.+..|++.-++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4577888888763 3 344666777665555444 457899999999999999974443
Q ss_pred HHHHHHH---HHcCChhhHHHHHHHHHHhC
Q 037592 290 VLLDNVY---RAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 290 ~~l~~~~---~~~g~~~~A~~~~~~m~~~~ 316 (337)
..++... ...|..+++...+.++.+-+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3333221 24577788889999988743
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.84 E-value=3e-08 Score=82.43 Aligned_cols=93 Identities=11% Similarity=-0.097 Sum_probs=60.3
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
..++..+..+|.+.|++++|+..+++.. +.+..+|..+..+|...|++++|+..|++..+... .+...+..+..++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 3566667777777777777777776665 33556677777777777777777777777766422 2445566666666
Q ss_pred hhcCchhhH-HHHHHHHH
Q 037592 195 SHMGLIDRG-RKHFASMT 211 (337)
Q Consensus 195 ~~~~~~~~a-~~~~~~~~ 211 (337)
...|+.++| ...++.|.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777766 34555554
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=1.1e-07 Score=66.14 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=74.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHH
Q 037592 21 VVVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACA 94 (337)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 94 (337)
...+..+...+...|++++|.+.|+++.. .+...+..+...+...|++++|..+++++.+ | +..++..+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45677777778888888888888877732 2456677777778888888888888877776 2 3445666677777
Q ss_pred hhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 037592 95 GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130 (337)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (337)
..|++++|...++++++..+ .+...+..+..++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHh
Confidence 77777777777777776654 444555555554443
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=1.8e-07 Score=64.21 Aligned_cols=107 Identities=12% Similarity=-0.004 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACT 263 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~ 263 (337)
.+..+...+...|++++|...++.++... +.+...+..+..++...|++++|...+++. ... .+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444445555555555555555554321 234455555555555566666666655542 112 23444555556666
Q ss_pred cCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
..|++++|...++++.+..|+++..+..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666666666666666666665555444443
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.83 E-value=5.4e-08 Score=68.29 Aligned_cols=114 Identities=11% Similarity=-0.008 Sum_probs=79.7
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRAC 93 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~ 93 (337)
+...+..+...+...|++++|...|++.. .| +...+..+..++...|++++|.+.+++..+ |+ ...+..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45566777777788888888888887763 22 566677777778888888888888887776 33 44566666777
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (337)
...|++++|...+++.++..+ .+...+..+..++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 777777777777777777654 4556666666666666553
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.83 E-value=9.4e-08 Score=67.94 Aligned_cols=96 Identities=9% Similarity=-0.022 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
+...+..+...+...|++++|...|++. .. +.+...|..+..++...|++++|+..++++.+..|+++..+..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444555555555555555555555542 11 223344455555555555555555555555555555555555555555
Q ss_pred HHcCChhhHHHHHHHHHH
Q 037592 297 RAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~ 314 (337)
...|++++|...|++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555544
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.2e-07 Score=66.42 Aligned_cols=108 Identities=10% Similarity=-0.095 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACT 263 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 263 (337)
.+......+.+.|++++|...|+++++.. +.+...+..+..+|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34444555556666666666666665432 334556666666666666666666666652 2222 3445666666666
Q ss_pred cCCChhHHHHHHHHHHhcC------CCccchHHHHHHH
Q 037592 264 TFRNAHVAERVAKKIMELK------PDCHLSYVLLDNV 295 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 295 (337)
..|++++|+..++++.++. |++......+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 7777777777777777666 6655555444443
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.81 E-value=9.4e-07 Score=75.95 Aligned_cols=185 Identities=9% Similarity=-0.088 Sum_probs=121.6
Q ss_pred HHHHHhcCChHHHHHHHHHcccCC--------------------hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC---
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKKN--------------------SVSSSALLQGYCQTGDFESVIRIFREMEE--ID--- 82 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--- 82 (337)
...+.+.|++++|++.|..+.+.+ ..++..++..|...|++++|.+++.++.. +.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 455677888888888888773220 11366778888888888888888888776 11
Q ss_pred c----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC----C-CchhHHHHHHHHHhcCCHHHHHHHHhcCC--------
Q 037592 83 L----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC----K-DVIIESALVDLYAKCGCVDFAHQIFLQMP-------- 145 (337)
Q Consensus 83 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------- 145 (337)
. .+.+.+...+...|+++.+..++++....... + -..++..+...|...|++++|..++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11222333444567788888888777654221 1 13566778888888888888888877654
Q ss_pred CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc--CC-CC-C--HhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 146 VR-NLITWNSMISGFAQNGRGEEALRIFDDMTEG--GT-KP-D--HVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 146 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~-~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
.+ ...++..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...+.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2346777888888888888888888876542 11 11 1 13344555666777888888887777654
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.81 E-value=6.5e-08 Score=71.34 Aligned_cols=109 Identities=12% Similarity=-0.050 Sum_probs=91.1
Q ss_pred CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHH
Q 037592 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLG 260 (337)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 260 (337)
+...+..+...+...|++++|+..|+++++.. +.+...+..+..+|...|++++|+..|++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44567778888999999999999999997653 457888999999999999999999999974 3333 5677888889
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCccchHHHHH
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 293 (337)
++...|++++|+..|++++++.|++...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999887655444
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.81 E-value=3.4e-08 Score=68.84 Aligned_cols=93 Identities=14% Similarity=-0.073 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 223 YNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445566777788888888888763 3333 56667777777888888888888888888888888888888888888888
Q ss_pred ChhhHHHHHHHHHHh
Q 037592 301 RWNDAFKIRTLMKYS 315 (337)
Q Consensus 301 ~~~~A~~~~~~m~~~ 315 (337)
++++|+..+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888877654
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.81 E-value=8.6e-08 Score=68.84 Aligned_cols=95 Identities=9% Similarity=-0.106 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 221 EHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
..+..+...+.+.|++++|...|++. .. +.+...|..+..++...|++++|+..|+++.+++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34445555666666666666666653 22 22444555556666666666666666666666666666666666666666
Q ss_pred cCChhhHHHHHHHHHHh
Q 037592 299 VGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 299 ~g~~~~A~~~~~~m~~~ 315 (337)
.|++++|...|++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.80 E-value=1.8e-07 Score=68.86 Aligned_cols=96 Identities=8% Similarity=-0.049 Sum_probs=73.5
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
+...+..+...+...|++++|+..|++..+... .+...+..+..++...|++++|+..++.+++.. +.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 445677788888888888888888888877532 256677777788888888888888888886542 44577788888
Q ss_pred HHHHhcCChHHHHHHHHHh
Q 037592 228 DLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~ 246 (337)
.+|...|++++|...|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 8888888888888888763
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.79 E-value=5.5e-07 Score=77.39 Aligned_cols=159 Identities=9% Similarity=-0.019 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----CcH----HhHHHHHHHHHhCCCHhHHHHHHHHHHh----cCCCCC-HhHH
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMPV-----RNL----ITWNSMISGFAQNGRGEEALRIFDDMTE----GGTKPD-HVSF 187 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~ 187 (337)
..++..|...|++++|.+.+.++.. ++. .+.+.+...+...|++++|..+++.... .+..+. ..++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 3445555555555555555554431 111 1222222333344555555555555432 111221 2234
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHh-------cCCCc--hhH
Q 037592 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKP----KIEHYNCMVDLLGRAGLLEEAETLIENA-------DCRHD--SSL 254 (337)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~ 254 (337)
..+...+...|++++|..+++.+........ ...++..++..|...|++++|..++++. +..+. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 4455555556666666666555543211111 1344555555666666666666655542 11111 122
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 255 WEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 255 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
+..+...+...|++++|...|.++.+
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344445555666666655555543
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.79 E-value=6.7e-08 Score=67.95 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc--------hhHHHH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD--------SSLWEV 257 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--------~~~~~~ 257 (337)
+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|++.+++. ...|+ ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444455555555555555555554321 223444555555555555555555555432 11111 112333
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+..++...|++++|++.|+++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 444444555555555555555544444
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.8e-07 Score=67.29 Aligned_cols=106 Identities=10% Similarity=-0.061 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHH
Q 037592 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEV 257 (337)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 257 (337)
...+..+...+...|++++|...|+.+++ ..|+ ...+..+..+|...|++++|...+++. ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 33444455555556666666666665542 2333 345555555555555555555555542 2222 3344445
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHH
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 292 (337)
+..++...|++++|...++++.+..|++...+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 55555555555555555555555555544444333
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.78 E-value=1.4e-07 Score=66.25 Aligned_cols=94 Identities=7% Similarity=-0.046 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC-CCCC----HHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR-IKPK----IEHYNC 225 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~ 225 (337)
++..+...+.+.|++++|+..|++.++..+ .+...|..+..+|...|++++|+..++.+++... ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344555555555555555555555555321 1334444455555555555555555555543210 0011 124444
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 037592 226 MVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~ 245 (337)
+..++...|++++|++.|++
T Consensus 89 lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555554
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.76 E-value=9.3e-09 Score=78.55 Aligned_cols=159 Identities=8% Similarity=-0.062 Sum_probs=73.2
Q ss_pred HHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhh
Q 037592 27 LVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRL 101 (337)
Q Consensus 27 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 101 (337)
.+......|+++.+.+.|+..... ....+..+...+...|++++|+..|++..+ |+...+... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------~--- 78 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--------I--- 78 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--------H---
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--------h---
Confidence 344445556666666665433221 344566667777777777777777777765 222100000 0
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
..-... .....++..+..+|.+.|++++|+..+++.. +.+...+..+..+|...|++++|...|++..+.
T Consensus 79 -~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 79 -LLDKKK------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -HHHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHH------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 000000 0002344555555666666666666555544 234455555666666666666666666666553
Q ss_pred CCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 179 GTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 179 ~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
.. .+...+..+..++...++.+++.
T Consensus 152 ~p-~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 152 NP-NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp ST-TCHHHHHHHHHHHHHHHHHHC--
T ss_pred CC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 21 13344444445555555555544
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=1.6e-07 Score=64.44 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
....+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|+++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3457788889999999999999999974 2 3336677888888999999999999999999999999999999999999
Q ss_pred HHcCChhhHHHHHHHHHHhC
Q 037592 297 RAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~~ 316 (337)
...|++++|...+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987654
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.74 E-value=1e-07 Score=68.59 Aligned_cols=62 Identities=16% Similarity=0.021 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhc-------CCCccchH----HHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMEL-------KPDCHLSY----VLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
.|..+..++.+.|++++|+..+++++++ +|++..+| ...+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6777778888888888888888888888 99988888 89999999999999999999888764
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=4.1e-07 Score=65.35 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC----HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD----HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
..+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++.+++.. +.+...+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHH
Confidence 34444444445555555555555554442 232 2334444444444555555555554443321 223444444
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 037592 226 MVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~ 245 (337)
+..++...|++++|...|++
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 44445555555555555443
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.71 E-value=3.8e-07 Score=61.91 Aligned_cols=99 Identities=10% Similarity=-0.036 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC---chhHHHHHHH
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH---DSSLWEVLLG 260 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~ 260 (337)
..+..+...+...|++++|...++.+++.. +.+...+..+..++...|++++|...+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 344455556666677777777776665432 334556666677777777777777777653 2333 3556666667
Q ss_pred HHhcC-CChhHHHHHHHHHHhcCCCc
Q 037592 261 ACTTF-RNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 261 ~~~~~-g~~~~a~~~~~~~~~~~p~~ 285 (337)
++... |++++|.+.++++....|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 77777 77777777777777776664
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=3e-07 Score=65.27 Aligned_cols=100 Identities=7% Similarity=-0.130 Sum_probs=57.6
Q ss_pred CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHH
Q 037592 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLG 260 (337)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~ 260 (337)
+...+..+...+...|++++|...|+.++... +.+...+..+..++...|++++|...+++. .. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34455555555666666666666666654432 334555666666666666666666666552 21 223445556666
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCC
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
++...|++++|+..++++.+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 666666666666666666665554
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.70 E-value=2.4e-07 Score=65.00 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=63.7
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc----hhHHHHHHH
Q 037592 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKI---EHYNCMVDLLGRAGLLEEAETLIENA-DCRHD----SSLWEVLLG 260 (337)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~ 260 (337)
.+...+...|++++|...++.+++.. +.+. ..+..+..++...|++++|...|++. ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34556667777777777777776542 2222 46666777777777777777777763 22232 344556666
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCccchH
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 289 (337)
++...|++++|...++++.+..|+++...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 67777777777777777777777754433
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.70 E-value=3.4e-07 Score=79.35 Aligned_cols=129 Identities=9% Similarity=-0.026 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CC
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-------------KIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RH 250 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~ 250 (337)
.+..+...+.+.|++++|...|+++++.....+ ....|..+..+|.+.|++++|+..+++. .. +.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444555566666666666666666654321111 1578888999999999999999999874 33 33
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHH-HHHHHHH
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFK-IRTLMKY 314 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 314 (337)
+...|..+..+|...|++++|+..|+++++++|++..++..+..++...++.+++.+ .+..|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888999999999999999999999999999999999999999999888774 4555543
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.67 E-value=1.2e-07 Score=82.52 Aligned_cols=118 Identities=8% Similarity=-0.057 Sum_probs=90.6
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCCh
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNA 268 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 268 (337)
...+.+.|++++|.+.++++++.. +.+..++..+..+|.+.|++++|.+.+++. ...| +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344567788888888888886542 445778888888888888888888888874 3333 456778888889999999
Q ss_pred hHHHHHHHHHHhcCCCccchHHHHHHH--HHHcCChhhHHHHHH
Q 037592 269 HVAERVAKKIMELKPDCHLSYVLLDNV--YRAVGRWNDAFKIRT 310 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 310 (337)
++|++.++++.+..|++...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999988888888777 888899999999887
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.67 E-value=3.2e-07 Score=64.30 Aligned_cols=107 Identities=10% Similarity=-0.003 Sum_probs=57.1
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC----CCc----hhHHHH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC----RHD----SSLWEV 257 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~~~----~~~~~~ 257 (337)
+..+...+...|++++|...++.++... +.+...+..+...+...|++++|...+++. .. .++ ...+..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3344444555555555555555554321 233445555555555555555555555542 11 111 444555
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
+..++...|++++|...++++.+..|+ +.....+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 666667777777777777777776664 45544444443
No 176
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=1.8e-05 Score=69.13 Aligned_cols=200 Identities=12% Similarity=0.010 Sum_probs=129.2
Q ss_pred hHHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH-HHHHHhcC
Q 037592 69 ESVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF-AHQIFLQM 144 (337)
Q Consensus 69 ~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~ 144 (337)
+.+..+|+++.. |. ...|...+..+.+.|+.+.|..++++++.. + .+...+.. |....+.++ ...+.+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~----y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLY----YGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHH----HHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHH----HHhhcchhHHHHHHHHHH
Confidence 456778888887 33 345666677778889999999999999988 3 44444432 222111111 11122211
Q ss_pred C---------CC---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh-cCchhhHHHHHHHHH
Q 037592 145 P---------VR---NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH-MGLIDRGRKHFASMT 211 (337)
Q Consensus 145 ~---------~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 211 (337)
. .+ ....|...+....+.++.+.|..+|+++ +. ...+...|...+..-.. .++.+.|..+|+..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 1 01 1245666677766778899999999988 32 22233344322222222 336889999999987
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
+.. +.++..+...++.....|+.+.|..+|+... .....|...+..-...|+.+.+.++++++.+
T Consensus 348 ~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 754 3335556667777788899999999999873 2466788888777788999999888888875
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.63 E-value=2.8e-07 Score=67.23 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=11.5
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
+..+...+...|++++|.+.+++.
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 333444444555555555555444
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.62 E-value=1.3e-06 Score=61.21 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=43.0
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHhcCCCCCH---hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 037592 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDH---VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK---IEHYNCMVD 228 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~ 228 (337)
+...+...|++++|...|+++.+.... +. ..+..+..++...|++++|...++.++... +.+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 444455555555555555555543211 11 234444455555555555555555554331 112 344455555
Q ss_pred HHHhcCChHHHHHHHHH
Q 037592 229 LLGRAGLLEEAETLIEN 245 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~ 245 (337)
++...|++++|...|++
T Consensus 85 ~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 55555555555555554
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.60 E-value=5.2e-07 Score=65.72 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh-------cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcC------CCccc
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIENA-------DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELK------PDCHL 287 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 287 (337)
++..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...++++.+.. +....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555555566666666555542 0000 12344555566677777777777777766521 11134
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
++..++.++...|++++|...+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5677777888888888888888776653
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.60 E-value=9e-08 Score=66.19 Aligned_cols=89 Identities=15% Similarity=0.089 Sum_probs=48.0
Q ss_pred cCchhhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHH
Q 037592 197 MGLIDRGRKHFASMTKEYR--IKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAE 272 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 272 (337)
.|++++|+..|+++++. + -+.+...+..+..+|...|++++|...|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666666666666532 1 1223455566666666666666666666653 2222 3444555556666666666666
Q ss_pred HHHHHHHhcCCCcc
Q 037592 273 RVAKKIMELKPDCH 286 (337)
Q Consensus 273 ~~~~~~~~~~p~~~ 286 (337)
..++++++..|+++
T Consensus 82 ~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCcH
Confidence 66666666666543
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.60 E-value=3.6e-07 Score=64.03 Aligned_cols=98 Identities=9% Similarity=0.024 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc-------cchHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC-------HLSYV 290 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 290 (337)
...+..++..+...|++++|...|++. . .+.+...+..+...+...|++++|...++++.+..|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456778889999999999999999974 2 33466778888899999999999999999999987765 77899
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 291 LLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 291 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.++.++...|++++|...|++..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999999988643
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.59 E-value=2.7e-07 Score=76.62 Aligned_cols=150 Identities=9% Similarity=-0.081 Sum_probs=80.1
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (337)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345667777778888888888888887763 344331 223333433332211 137788889
Q ss_pred HHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHH-HHHcCChhhH
Q 037592 229 LLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV-YRAVGRWNDA 305 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A 305 (337)
+|.+.|++++|+..+++. ... .+...|..+..+|...|++++|+..|++++++.|++..++..+..+ ....+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 333 3567788888999999999999999999999999988888887776 3445677888
Q ss_pred HHHHHHHHHhCCc
Q 037592 306 FKIRTLMKYSGVK 318 (337)
Q Consensus 306 ~~~~~~m~~~~~~ 318 (337)
...|.+|......
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 8888888765443
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.59 E-value=4.5e-07 Score=66.57 Aligned_cols=102 Identities=13% Similarity=-0.007 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYR----------------IKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D 247 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 247 (337)
..+......+.+.|++++|+..|..++.... .+.+...|..+..+|.+.|++++|+..+++. .
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4556666777788888888888888765300 1222356666777777777777777777653 2
Q ss_pred CC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc
Q 037592 248 CR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286 (337)
Q Consensus 248 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 286 (337)
.. .+...|..+..++...|++++|...|+++++++|+++
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 22 3455666666777777777777777777777777765
No 184
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.58 E-value=6.4e-07 Score=62.23 Aligned_cols=97 Identities=11% Similarity=0.010 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhc
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTT 264 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 264 (337)
+..+...+.+.|++++|...++.+++.. +.+...|..+..++...|++++|+..|++. ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3344555666777777777777776542 345666667777777777777777777653 2333 44556666677777
Q ss_pred CCChhHHHHHHHHHHhcCCCc
Q 037592 265 FRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~p~~ 285 (337)
.|++++|+..++++++..|++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 777777777777777777764
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.58 E-value=7.6e-07 Score=74.84 Aligned_cols=90 Identities=12% Similarity=-0.043 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
+..+|..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|++++|+..|++++++.|++...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578888999999999999999999874 4444 5667888889999999999999999999999999888999999998
Q ss_pred HHcCChhhHHHH
Q 037592 297 RAVGRWNDAFKI 308 (337)
Q Consensus 297 ~~~g~~~~A~~~ 308 (337)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 888887777653
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.57 E-value=1.8e-07 Score=81.49 Aligned_cols=119 Identities=9% Similarity=-0.028 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhh
Q 037592 23 VESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGL 96 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 96 (337)
.+..+...+.+.|++++|++.|++.+ .| +...|..+..+|.+.|++++|++.+++..+ | +..++..+..++...
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34555666778899999999999883 33 577889999999999999999999999988 3 345788888899999
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHH--HHhcCCHHHHHHHHh
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDL--YAKCGCVDFAHQIFL 142 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 142 (337)
|++++|...++++++..+ .+...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999998865 445566666666 888899999999988
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.55 E-value=9.1e-07 Score=64.92 Aligned_cols=102 Identities=10% Similarity=0.010 Sum_probs=71.3
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHhc--------CC--------CC-CHhHHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTEG--------GT--------KP-DHVSFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
...+......+.+.|++++|+..|.+.... .. .| +...+..+..++.+.|++++|+..++.++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345667777888888888888888887663 00 11 22456667777778888888888888886
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCch
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDS 252 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 252 (337)
+.. +.+...|..+..+|...|++++|...|++. ...|+.
T Consensus 91 ~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 91 KRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred hcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 542 445777788888888888888888888763 444543
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.50 E-value=7.5e-07 Score=77.22 Aligned_cols=132 Identities=10% Similarity=-0.045 Sum_probs=72.5
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 037592 52 SVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129 (337)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (337)
...|..+...+.+.|++++|+..|++..+ |+...+. . +... +.. .....+|..+..+|.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---------~--~~~~----~~~----~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS---------E--KESK----ASE----SFLLAAFLNLAMCYL 328 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC---------H--HHHH----HHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC---------h--HHHH----HHH----HHHHHHHHHHHHHHH
Confidence 34456666666677777777777766665 3321000 0 0000 000 001345566666666
Q ss_pred hcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHH
Q 037592 130 KCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 130 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
+.|++++|+..+++.. +.+..+|..+..+|...|++++|+..|+++.+. .| +...+..+..++.+.++.+++.
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777766666655 334556666667777777777777777776663 23 3345555556666666666554
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.49 E-value=5.1e-07 Score=62.30 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=35.2
Q ss_pred CCHhHHHHHHHHHHhcCC-CC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037592 163 GRGEEALRIFDDMTEGGT-KP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 240 (337)
|++++|+..|++..+.+. .| +...+..+..++...|++++|...++++++.. +.+..++..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHHH
Confidence 445555555555544320 01 22334444444445555555555555554321 223444444555555555555555
Q ss_pred HHHHH
Q 037592 241 TLIEN 245 (337)
Q Consensus 241 ~~~~~ 245 (337)
..+++
T Consensus 82 ~~~~~ 86 (117)
T 3k9i_A 82 ELLLK 86 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.49 E-value=9.9e-07 Score=76.59 Aligned_cols=125 Identities=9% Similarity=-0.036 Sum_probs=99.5
Q ss_pred HHhhcCchhhHHHHHHHHHHhcC--CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHh--------c-CCCc-hhHHH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYR--IKP----KIEHYNCMVDLLGRAGLLEEAETLIENA--------D-CRHD-SSLWE 256 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~ 256 (337)
.+...|++++|..++++.++... +.+ ...+++.|+.+|...|++++|+.++++. | ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999999988875432 122 2577899999999999999999998863 2 3343 45688
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHh-----cCCCccc---hHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 257 VLLGACTTFRNAHVAERVAKKIME-----LKPDCHL---SYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 257 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.|...|...|++++|+.+++++++ +.|+++. ....+..++.+.+++++|..+|.++++.-.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999986 5677544 456788889999999999999999987543
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.48 E-value=5.8e-07 Score=74.67 Aligned_cols=140 Identities=10% Similarity=-0.056 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 037592 53 VSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130 (337)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (337)
..+..+...+.+.|++++|+..|++... |+.. .+...++.+++...+ ...+|..+..+|.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l----------~~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAV----------KNPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHH----------HTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 3466677778888888888888888776 3321 111222222222111 01245566666666
Q ss_pred cCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH-hHHHHHHHH-HhhcCchhhHHH
Q 037592 131 CGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH-VSFIGVLSA-CSHMGLIDRGRK 205 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~-~~~~~~~~~a~~ 205 (337)
.|++++|+..+++.. +.+...|..+..+|...|++++|...|++..+. .|+. ..+..+... ....+..+.+..
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666654 234556666666666667777777666666553 3322 222323222 123445556666
Q ss_pred HHHHHH
Q 037592 206 HFASMT 211 (337)
Q Consensus 206 ~~~~~~ 211 (337)
.|..++
T Consensus 321 ~~~~~l 326 (338)
T 2if4_A 321 MYKGIF 326 (338)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 666664
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=1.5e-05 Score=70.74 Aligned_cols=167 Identities=8% Similarity=-0.009 Sum_probs=105.8
Q ss_pred HHHHHHHhcCC---CCcHHhHHHHHHHHHhCCC----------HhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC--c
Q 037592 135 DFAHQIFLQMP---VRNLITWNSMISGFAQNGR----------GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG--L 199 (337)
Q Consensus 135 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~ 199 (337)
++|++.++++. +.+..+|+.--.++...|+ +++++..++++.+...+ +..+|..-.-.+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 34455555444 2233444444444444444 66777777777665333 4455555555555666 5
Q ss_pred hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHh-cCCC-chhHHHHHHHHHhc------------
Q 037592 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG-LLEEAETLIENA-DCRH-DSSLWEVLLGACTT------------ 264 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~------------ 264 (337)
++++++.++.+++.. +-+..+|+.-..++.+.| .++++.+.++++ ...| +...|+.....+..
T Consensus 125 ~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 577777777776543 445666666666666666 677777777653 3222 45556555544333
Q ss_pred --CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhh
Q 037592 265 --FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWND 304 (337)
Q Consensus 265 --~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 304 (337)
.+.++++++.+.+++..+|++..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2567999999999999999999999999999998888555
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.7e-07 Score=62.80 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc------cchHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC------HLSYV 290 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 290 (337)
+...+..+...+...|++++|.+.|++. .. +.+...+..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888888999998888863 22 3356677788888999999999999999999999987 66777
Q ss_pred HHHHHHHHcCChhhHHHHHHH
Q 037592 291 LLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 291 ~l~~~~~~~g~~~~A~~~~~~ 311 (337)
.+..++...|+.++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 788888888877777665543
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.40 E-value=2.3e-06 Score=71.94 Aligned_cols=117 Identities=10% Similarity=0.009 Sum_probs=76.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHccc----------------C---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLK----------------K---NSVSSSALLQGYCQTGDFESVIRIFREMEE-- 80 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 80 (337)
..+..+...+.+.|++++|+..|++.+. . +...|..+..+|.+.|++++|++.++++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3466777888888888888888887754 1 244566666777777777777777777766
Q ss_pred c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 81 I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 81 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
| +..++..+..++...|++++|...++++++..+ .+..++..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 234566666666777777777777777666643 345555556666666666555543
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.32 E-value=3.4e-06 Score=56.24 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+...+..+..++...|++++|+..|+++++.+|+++.+|..++.+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555566666666666666666666666666666666666666666666666666666554
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.28 E-value=6.3e-06 Score=59.32 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCC---------CC-cHHhH----HHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 120 IESALVDLYAKCGCVDFAHQIFLQMP---------VR-NLITW----NSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
.|..+..++.+.|++++|+..+++.. .| +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555555555555555555544433 22 33456 6777777777777777777777765
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.27 E-value=9.6e-06 Score=52.62 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
...+..+...+...|++++|...+++. .. +.+...+..+..++...|++++|...++++.+..|+++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777777788888888887763 22 2345567777778888888888888888888888887778877777776
Q ss_pred HcC
Q 037592 298 AVG 300 (337)
Q Consensus 298 ~~g 300 (337)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.26 E-value=2.5e-06 Score=61.32 Aligned_cols=96 Identities=9% Similarity=0.035 Sum_probs=62.2
Q ss_pred hcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHH
Q 037592 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
+.+.+++|.+.++..++.. +.+...|..+..++...++++.+...++ .+++|+..|
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~~l 69 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHHHH
Confidence 4566777888888776543 4466777777777777666553333221 256677777
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcC-----------ChhhHHHHHHHHHHh
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVG-----------RWNDAFKIRTLMKYS 315 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~ 315 (337)
+++++++|+...+|..++.+|...| ++++|++.|++..+.
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 7777777776667777777776653 677777777766654
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.22 E-value=3.6e-06 Score=73.05 Aligned_cols=95 Identities=8% Similarity=-0.063 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCC----------CCc-HHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-----CCC
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMP----------VRN-LITWNSMISGFAQNGRGEEALRIFDDMTEG-----GTK 181 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~ 181 (337)
..+++.|..+|...|++++|+.++++.. .|+ ..+++.|...|...|++++|..++++..+. |..
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455666666666666666666665544 122 245667777777777777777777765431 221
Q ss_pred -CC-HhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 182 -PD-HVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 182 -p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
|+ ..+...+..++...+.+++|+.++.++.+
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12334444566677777777777777744
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.21 E-value=8.9e-05 Score=65.88 Aligned_cols=167 Identities=13% Similarity=0.016 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHhh--cCcc-cHHHHHHHHHhhch----------hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC--
Q 037592 68 FESVIRIFREMEE--IDLF-SFGIVLRACAGLAA----------LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG-- 132 (337)
Q Consensus 68 ~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 132 (337)
.++|++.++++.. |+.. +|+.-..++...++ ++++...++++++..+ .+..+|+.-.-++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccc
Confidence 3456666666666 3322 34444444444444 6677777777776654 55666666666666666
Q ss_pred CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCC-CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc-----------
Q 037592 133 CVDFAHQIFLQMP---VRNLITWNSMISGFAQNG-RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM----------- 197 (337)
Q Consensus 133 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------- 197 (337)
+++++++.++++. +.+..+|+.....+...| .++++++.++++.+..+. +..+|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccc
Confidence 5577777777766 345566666666666666 677777777777665332 555555554444432
Q ss_pred ---CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 198 ---GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 198 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
+.++++.+.++.++... +-+...|+.+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCccc
Confidence 55788999998887653 5567888888888887777444
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.21 E-value=7.5e-06 Score=56.04 Aligned_cols=81 Identities=10% Similarity=-0.004 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037592 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
.|...++.+++. .+.+...+..+...|...|++++|...|++. .. +.+...|..+..++...|++++|...|+++.
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466667766542 2345667777777777777777777777763 22 2244566666677777777777777777777
Q ss_pred hcCCC
Q 037592 280 ELKPD 284 (337)
Q Consensus 280 ~~~p~ 284 (337)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 76554
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.15 E-value=3.2e-05 Score=52.81 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
+.|+..|+..++.. +.+...+..+...|...|++++|+..|++.+ .| +...|..+..++...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56788888888764 4467788888889999999999999998873 23 56678888888999999999999998876
Q ss_pred h
Q 037592 80 E 80 (337)
Q Consensus 80 ~ 80 (337)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 6
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.10 E-value=7e-05 Score=53.10 Aligned_cols=108 Identities=10% Similarity=-0.061 Sum_probs=49.0
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR----AGLLEEA 239 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 239 (337)
++++|+..|++..+.|. |... +...|...+..++|.+.|++..+. -++..+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45555555555555442 1211 334444444455555555555321 234444445555544 4455555
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHhc----CCChhHHHHHHHHHHh
Q 037592 240 ETLIENADCRHDSSLWEVLLGACTT----FRNAHVAERVAKKIME 280 (337)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 280 (337)
.+.|++.-...++..+..+...|.. .+++++|..+|+++.+
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 5555443222233334444444443 4444444444444444
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=1.8e-05 Score=53.49 Aligned_cols=67 Identities=7% Similarity=-0.038 Sum_probs=61.3
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+...+..+...+...|++++|+..|+++++..|+++..+..++.++...|++++|+..+++..+...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 5567788888999999999999999999999999999999999999999999999999999887543
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.08 E-value=2.6e-05 Score=50.98 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=56.1
Q ss_pred CchhHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 250 HDSSLWEVLLGACTTFRN---AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 250 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
+++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666667766543333 789999999999999999999999999999999999999999999886554
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.07 E-value=4.5e-05 Score=54.12 Aligned_cols=108 Identities=11% Similarity=-0.061 Sum_probs=74.4
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC-ChhhHHHHHHHHHc----CCChhHHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-NSVSSSALLQGYCQ----TGDFESVIRIFR 76 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~ 76 (337)
+++|.+.|+...+.| .|+.. |...|...+.+++|++.|++..+. +...+..|...|.. .+++++|+++|+
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 85 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS 85 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 467777777777776 22222 666666667777788877776443 56677777777776 677778888877
Q ss_pred HHhh-cCcccHHHHHHHHHh----hchhhhhHHHHHHHHHhhC
Q 037592 77 EMEE-IDLFSFGIVLRACAG----LAALRLGKEVHCQYIRRSG 114 (337)
Q Consensus 77 ~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 114 (337)
+..+ -+...+..+...|.. .+++++|...|++..+.|.
T Consensus 86 ~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 86 KACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7766 555566666666666 6777777777777776654
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.00 E-value=1.4e-05 Score=57.46 Aligned_cols=94 Identities=9% Similarity=0.014 Sum_probs=48.7
Q ss_pred hhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH----------HHHHHHHhcCC--C-CcHHhHHHHHHHHHh
Q 037592 95 GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV----------DFAHQIFLQMP--V-RNLITWNSMISGFAQ 161 (337)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~--~-~~~~~~~~l~~~~~~ 161 (337)
+.+.+++|...+++.++..+ .+...|+.+..++...+++ ++|+..|++.. . .+..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34445555555555555543 4455555555555554443 34444444443 1 233444445555444
Q ss_pred C-----------CCHhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 037592 162 N-----------GRGEEALRIFDDMTEGGTKPDHVSFIGVL 191 (337)
Q Consensus 162 ~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 191 (337)
. |++++|+..|++.++ +.|+...|...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 3 467777777777776 455555444333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.97 E-value=5.8e-05 Score=50.09 Aligned_cols=64 Identities=11% Similarity=0.176 Sum_probs=37.6
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
+...+..+..+|...|++++|+..|++..+.... +...|..+..++...|++++|...+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455566666666666666666666666654322 334555555666666666666666666543
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.96 E-value=5.7e-05 Score=48.79 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 037592 55 SSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129 (337)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (337)
+..+...+...|++++|+..|++..+ | +...+..+..++...|++++|...+++.++..+ .+...+..+..++.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 33444444444444444444444443 1 122333444444444444444444444444432 23344444444433
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.79 E-value=4.5e-05 Score=50.37 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=41.7
Q ss_pred HHHHHHhcCChHHHHHHHHHh-cCCC-chh-HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchH
Q 037592 226 MVDLLGRAGLLEEAETLIENA-DCRH-DSS-LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 289 (337)
.+..+...|++++|...|++. ...| +.. .+..+..++...|++++|+..|+++++.+|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566667777777777653 2223 334 566666677777777777777777777777766554
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.73 E-value=0.00023 Score=60.73 Aligned_cols=91 Identities=11% Similarity=0.004 Sum_probs=56.2
Q ss_pred cCchhhHHHHHHHHHHhcC--CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHh--------c-CCCc-hhHHHHHHH
Q 037592 197 MGLIDRGRKHFASMTKEYR--IKPK----IEHYNCMVDLLGRAGLLEEAETLIENA--------D-CRHD-SSLWEVLLG 260 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~~ 260 (337)
.|++++|..++++.+.... +.|+ ..+++.|+.+|...|++++|+.++++. | ..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4667777777776654321 1222 356677777777777777777777652 2 2333 345666677
Q ss_pred HHhcCCChhHHHHHHHHHHh-----cCCCccc
Q 037592 261 ACTTFRNAHVAERVAKKIME-----LKPDCHL 287 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~ 287 (337)
.|...|++++|+.+++++++ +.|+++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 77777777777777777765 4566443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.71 E-value=8.6e-05 Score=63.39 Aligned_cols=83 Identities=12% Similarity=0.056 Sum_probs=67.9
Q ss_pred hcCChHHHHHHHHHh--------c-CCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHh-----cCCCc---cchHHHHH
Q 037592 232 RAGLLEEAETLIENA--------D-CRHD-SSLWEVLLGACTTFRNAHVAERVAKKIME-----LKPDC---HLSYVLLD 293 (337)
Q Consensus 232 ~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~ 293 (337)
..|++++|+.++++. + ..|+ ..+++.+..+|...|++++|+.+++++++ ..|++ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999998762 2 2333 35788899999999999999999999986 44444 45799999
Q ss_pred HHHHHcCChhhHHHHHHHHHH
Q 037592 294 NVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m~~ 314 (337)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.64 E-value=0.00016 Score=47.57 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=55.0
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCccc-hHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDCHL-SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
....+...|++++|+..++++.+..|+++. .+..++.+|...|++++|...|++..+....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 345678899999999999999999999988 9999999999999999999999999886543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.63 E-value=0.00023 Score=60.85 Aligned_cols=60 Identities=15% Similarity=-0.011 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHh--------c-CCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 221 EHYNCMVDLLGRAGLLEEAETLIENA--------D-CRHD-SSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
.+++.++.+|...|++++|+.++++. | ..|+ ..+++.|...|...|++++|+.+++++++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444555555555555555554431 1 1121 22344444445555555555555555555
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.63 E-value=0.0009 Score=57.19 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=61.9
Q ss_pred HHHHHhcCChHHHHHHHHHh--------c-CCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHh-----cCCCc---cch
Q 037592 227 VDLLGRAGLLEEAETLIENA--------D-CRH-DSSLWEVLLGACTTFRNAHVAERVAKKIME-----LKPDC---HLS 288 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~--------~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~ 288 (337)
+..+.+.|++++|+.++++. + ..| ...+++.+..+|...|++++|+.+++++++ ..|++ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455677888888887753 1 112 234677777888888888888888888875 33443 446
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 289 YVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
++.|+..|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77888888888888888888887654
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.54 E-value=0.0073 Score=49.79 Aligned_cols=68 Identities=13% Similarity=-0.004 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+.++.++..+...+...|++++|...+++. ...|+...|..+...+.-.|++++|.+.++++..++|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 445566666655555566777777666652 23355555555556666667777777777776666666
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.50 E-value=0.01 Score=40.77 Aligned_cols=141 Identities=13% Similarity=0.042 Sum_probs=103.1
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+ |--.| ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I----GkiFD----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI----GSYFD----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH----GGGSC----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH----hhhcC----------cHhhhcHHH
Confidence 34567788888888777653 24455666665555555556666666665 32333 235677777
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
....+-.++. +.......+......|+-++..+++..+..-.|.++.....+..+|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 7777777653 45557778888999999999999999976655544889999999999999999999999999999986
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.50 E-value=0.0097 Score=49.07 Aligned_cols=62 Identities=6% Similarity=0.080 Sum_probs=30.9
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...+++++
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444455555555555555532 444444444444445555555555555554
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.019 Score=41.86 Aligned_cols=130 Identities=13% Similarity=0.047 Sum_probs=91.6
Q ss_pred HHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHH
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHC 107 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 107 (337)
.......|+++.|.++.+.+ .+...|..|.......|+++-|.++|.+... +..+.-.|.-.|+.++...+-+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence 45567899999999998876 4677899999999999999999999998754 5666666777777777666655
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHH
Q 037592 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175 (337)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 175 (337)
.....|- ++.....+.-.|+++++.++|.+......... .....|-.+.|.++.+++
T Consensus 85 iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~-----~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 85 IAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA-----VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH-----HHHHTTCHHHHHHHHHHT
T ss_pred HHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH-----HHHHcCcHHHHHHHHHHh
Confidence 5555443 45555667778888888888876654222111 112245666666666554
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.36 E-value=0.0041 Score=57.87 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=47.8
Q ss_pred HhcCCHHHHHH-HHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHH
Q 037592 129 AKCGCVDFAHQ-IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207 (337)
Q Consensus 129 ~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 207 (337)
...+++++|.+ ++..+. +......++..+.+.|.+++|+++.+.-. . -.......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~----~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD--------Q----KFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------H----HHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc--------h----heehhhhcCCHHHHHHHH
Confidence 34566666655 443322 01122445555555666666555442110 0 012223456666665553
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc
Q 037592 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247 (337)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 247 (337)
+.+ .+...|..+...+.+.|+++.|++.|.+++
T Consensus 676 ~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 TDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred Hhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 222 344566666666666666666666666553
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.35 E-value=0.0082 Score=55.81 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=57.5
Q ss_pred HHHhcCChHHHHH-HHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHH
Q 037592 30 MYGKCGLVDESHR-VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQ 108 (337)
Q Consensus 30 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 108 (337)
.....+++++|.+ ++..+. +......++..+.+.|.++.|+++.+.- ..-.......|+++.|.++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHh
Confidence 3345677777766 443322 0222366666667777777776655321 1123334556677777666432
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 678 ~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 678 E------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp C------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred h------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 1 455667777777777777777777666544
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.34 E-value=0.0025 Score=42.37 Aligned_cols=75 Identities=20% Similarity=0.104 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHh----c-----CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 218 PKIEHYNCMVDLLGRAGLLEEAETLIENA----D-----CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
.+..-+..++..+.+.|+++.|...|+.. . ..+....+..+..++.+.|+++.|...++++.++.|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34455566777777777777777777652 0 12345667788888999999999999999999999997655
Q ss_pred HHHH
Q 037592 289 YVLL 292 (337)
Q Consensus 289 ~~~l 292 (337)
...+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 4433
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.022 Score=41.53 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=81.3
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHH
Q 037592 126 DLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205 (337)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 205 (337)
......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888887765 3567888888888888888888888877643 2334444555677766665
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
+-+....+ | -++.....+...|+++++.++|.+.+.-|.... .....|-.+.|.++..++
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 55554222 2 233444556677888888888887765443321 122255566666665544
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.22 E-value=0.0032 Score=44.68 Aligned_cols=88 Identities=11% Similarity=0.014 Sum_probs=63.1
Q ss_pred chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHh-cCC-C--chhHHHHHHHHHhcCCChhHH
Q 037592 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG---LLEEAETLIENA-DCR-H--DSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~a 271 (337)
....+.+.|.+.... + +++..+...+.-++++.+ +.+++..+|++. ... | ....+..+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344556666665443 2 467778888888888877 566888888864 222 4 244555666778999999999
Q ss_pred HHHHHHHHhcCCCccch
Q 037592 272 ERVAKKIMELKPDCHLS 288 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~ 288 (337)
.+.++.+++.+|++..+
T Consensus 91 ~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhcCCCCHHH
Confidence 99999999999987544
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.14 E-value=2.1e-05 Score=66.34 Aligned_cols=235 Identities=12% Similarity=0.109 Sum_probs=173.1
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhc
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLA 97 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 97 (337)
.+.+|+.|..+..+.+++.+|++-| +...|+..|..+|.+..+.|++++-++++...++ .+...=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 4567889999999999999988877 4445778889999999999999999999988877 56666678999999999
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC------------------------CCcHHhHH
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP------------------------VRNLITWN 153 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~ 153 (337)
+..+.++++. .|+..-...+.+-|...|.++.|.-+|..+. ..++.||.
T Consensus 131 rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 131 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp SSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred cHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 8887766542 2666666778888888888888888887664 23667899
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHh
Q 037592 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI-KPKIEHYNCMVDLLGR 232 (337)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 232 (337)
.+-.+|...+++.-|.-.--.+. +.|+ -...++..|-..|.+++-+.+++..+ |. ......|+.|.-.|++
T Consensus 204 eV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHh
Confidence 99999999998887766544443 2222 22346677888999999999888775 33 3567888888888877
Q ss_pred cCChHHHHHHHHH----hcCC------CchhHHHHHHHHHhcCCChhHHH
Q 037592 233 AGLLEEAETLIEN----ADCR------HDSSLWEVLLGACTTFRNAHVAE 272 (337)
Q Consensus 233 ~g~~~~A~~~~~~----~~~~------~~~~~~~~l~~~~~~~g~~~~a~ 272 (337)
- ++++..+.++- +.++ -....|.-++-.|.+-.+++.|.
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5 55555555543 3222 13445777777777777777665
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.14 E-value=0.0025 Score=50.43 Aligned_cols=53 Identities=2% Similarity=-0.182 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHHhcCCCc-cchHHHHHHHHHHc-CChhhHHHHHHHHHHhCCc
Q 037592 266 RNAHVAERVAKKIMELKPDC-HLSYVLLDNVYRAV-GRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 266 g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 318 (337)
|+.++|.+.|+++++++|+. ..++....+.++.. |+.++|.+.+++.......
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45555555555555555532 44444444444442 4455555555544443333
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.05 E-value=0.011 Score=38.36 Aligned_cols=68 Identities=9% Similarity=-0.019 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 217 KPKIEHYNCMVDLLGRAGL---LEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+.++..+..+..++...++ .++|..++++. ...| ++.....+...+.+.|++++|+..|+++.+..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455566666666544333 56677766652 3333 3444455556667777777777777777776666
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.92 E-value=1.3e-07 Score=79.32 Aligned_cols=241 Identities=12% Similarity=0.089 Sum_probs=166.1
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (337)
.+..|..|..+....++..+|++.|-+. .|+..|..++.++.+.|.+++-..++.-..+.. .++.+=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 4667999999999999999998877544 677789999999999999999999987766553 455566789999999
Q ss_pred cCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC--------------------CCCCHhHHHHH
Q 037592 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG--------------------TKPDHVSFIGV 190 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------------------~~p~~~~~~~l 190 (337)
.++..+-.+++. .|+..-......-|...|.++.|.-+|..+.... -.-+..||..+
T Consensus 129 ~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV 205 (624)
T 3lvg_A 129 TNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 205 (624)
T ss_dssp SCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred hCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 999765544432 4555555666677777777777766665432210 01245677777
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hc-CCCchhHHHHHHHHHhcCCCh
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-AD-CRHDSSLWEVLLGACTTFRNA 268 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~~~~~~~~~l~~~~~~~g~~ 268 (337)
-.+|...+.+.-|.-.--.++- .++ -...++..|-..|-+++-+.+++. +| .+.....|+-|.-.|++- ++
T Consensus 206 ~~ACvd~~EfrLAqicGLniIv----had--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 206 CFACVDGKEFRLAQMCGLHIVV----HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp THHHHHSCTTTTTTHHHHHHHC----CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHhCchHHHHHHHhcchhcc----cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence 7788888877776554444432 122 222356667788888888888875 44 345666777777777766 55
Q ss_pred hHHHHHHHHHHh-cC-CCccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 269 HVAERVAKKIME-LK-PDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 269 ~~a~~~~~~~~~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
++..+.++.... ++ | .++++|.+..-|.++.-+|..-
T Consensus 279 eKlmEHlklf~sriNip-------KviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIP-------KVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp THHHHHHTTSSSSSCCT-------TTHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHH-------HHHHHHHHHhhHHHHHHHHhcc
Confidence 555555544333 22 2 3678888888899888877654
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.80 E-value=0.0054 Score=43.52 Aligned_cols=82 Identities=7% Similarity=-0.075 Sum_probs=64.9
Q ss_pred hHHHHHHHHHh--cCCCchhHHHHHHHHHhcCC---ChhHHHHHHHHHHhcC-C-CccchHHHHHHHHHHcCChhhHHHH
Q 037592 236 LEEAETLIENA--DCRHDSSLWEVLLGACTTFR---NAHVAERVAKKIMELK-P-DCHLSYVLLDNVYRAVGRWNDAFKI 308 (337)
Q Consensus 236 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (337)
+..+++-|.+. ...++..+.-.+..++++.+ +.++++.++++..+.. | +...++..|.-+|.+.|++++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34555555543 23467777777788888888 6679999999999987 7 4578899999999999999999999
Q ss_pred HHHHHHhCC
Q 037592 309 RTLMKYSGV 317 (337)
Q Consensus 309 ~~~m~~~~~ 317 (337)
++.+.+...
T Consensus 94 ~~~lL~ieP 102 (152)
T 1pc2_A 94 VRGLLQTEP 102 (152)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHhcCC
Confidence 999988554
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.66 E-value=0.037 Score=43.86 Aligned_cols=142 Identities=9% Similarity=0.036 Sum_probs=78.3
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH--HhHHHHHH-HHHhC--CC------Hh
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL--ITWNSMIS-GFAQN--GR------GE 166 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~-~~~~~--~~------~~ 166 (337)
+...|..+|.+..+.+..- ..+-..=..--.+.++..+..+.+.++.+.++ ..|..++. .+... |+ ..
T Consensus 102 ~~~RA~~Ly~ra~~y~~ra-L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~ 180 (301)
T 3u64_A 102 AYSRARKLYLRGARYALSS-LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVH 180 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHH
Confidence 3456666766666554310 00000000012344555566666666664443 34555543 23322 32 45
Q ss_pred HHHHHHHHHHhcCCCCC---HhHHHHHHHHHhhc-----CchhhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhc-CC
Q 037592 167 EALRIFDDMTEGGTKPD---HVSFIGVLSACSHM-----GLIDRGRKHFASMTKEYRIKP--KIEHYNCMVDLLGRA-GL 235 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g~ 235 (337)
.|...+++..+ +.|+ ...|..+...|... |+.++|.+.|++.++- .| +..++......++.. |+
T Consensus 181 ~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 181 AAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCC
Confidence 66666676666 4454 34666666666663 7777777777777644 34 256666667777763 77
Q ss_pred hHHHHHHHHH
Q 037592 236 LEEAETLIEN 245 (337)
Q Consensus 236 ~~~A~~~~~~ 245 (337)
.+++.+.+++
T Consensus 256 ~~~a~~~L~k 265 (301)
T 3u64_A 256 RAGFDEALDR 265 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777776
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.64 E-value=0.012 Score=38.97 Aligned_cols=66 Identities=11% Similarity=-0.105 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcC-------CCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELK-------PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+...+-.+...+...|+++.|...++++.+.. +..+..+..|+.++.+.|++++|...+++..+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34456677888999999999999999998732 3346689999999999999999999999988743
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.056 Score=49.25 Aligned_cols=123 Identities=17% Similarity=0.138 Sum_probs=80.5
Q ss_pred HHHHHHHhhcCc-hhhHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCC-hHHHHHHHHH-h--------cCCC-ch-
Q 037592 188 IGVLSACSHMGL-IDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGL-LEEAETLIEN-A--------DCRH-DS- 252 (337)
Q Consensus 188 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~-~~~A~~~~~~-~--------~~~~-~~- 252 (337)
..++..+.-.++ .+.|..+++++.+. .|...++ ..++..+...++ --+|.+++.+ + ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 445555555556 57899999998554 4543333 233333333332 2234444432 1 1111 11
Q ss_pred ---------hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 253 ---------SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 253 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
.....-...+...|+++.|+++.+++....|++-.+|..|..+|...|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0111122447789999999999999999999999999999999999999999999999884
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.26 E-value=0.15 Score=34.81 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=63.1
Q ss_pred hcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHhc-CC-C-ch-hHHHHHHHHHhcCCCh
Q 037592 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE---AETLIENAD-CR-H-DS-SLWEVLLGACTTFRNA 268 (337)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-~-~~-~~~~~l~~~~~~~g~~ 268 (337)
.......+.+-|...... | .++..+-..+..++.+..+... ++.+++.+- .. | .. .....+.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334455566666665443 3 3777777778888888776555 788888753 22 3 12 2334455678999999
Q ss_pred hHHHHHHHHHHhcCCCccchH
Q 037592 269 HVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p~~~~~~ 289 (337)
+.|.+.++.+++..|++..+.
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999875543
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.00 E-value=0.81 Score=40.92 Aligned_cols=113 Identities=9% Similarity=-0.024 Sum_probs=52.4
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHH----HHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFI----GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 239 (337)
+.+.|...|....+... .+..... .+.......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 55666666666544321 1222111 1122222233234444455544221 22322233333333455777777
Q ss_pred HHHHHHhcCCC-c-hhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 240 ETLIENADCRH-D-SSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 240 ~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
...|+.+...+ + .....-+..++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777665332 1 22122333455666777777777766654
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.75 E-value=0.29 Score=33.77 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
.....+......|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++.+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344455556666666666666664332 345555555666666666666666666666643
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.63 E-value=0.26 Score=35.30 Aligned_cols=130 Identities=10% Similarity=-0.022 Sum_probs=67.1
Q ss_pred cCCCCchHh--HHHHHHHHHhcCChHHHHHHHHHcc-----cCCh-------hhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 15 LGLCGNVVV--ESSLVDMYGKCGLVDESHRVFDKML-----KKNS-------VSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 15 ~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
.|+.|.... +-.-+..+...|.++.|+-+.+.+. .++. .+...+.+++...|++.+|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 355554443 3334667778888888888777651 1221 1456677888888888888888888655
Q ss_pred -----cCcc-cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHhH
Q 037592 81 -----IDLF-SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITW 152 (337)
Q Consensus 81 -----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 152 (337)
+... +...+. . ...... ......+..+-..+..+|.+.|++++|+.+++.++ .+++..-
T Consensus 92 ~~k~l~k~~s~~~~~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvn 158 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKIN 158 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHH
T ss_pred HHHHHhcCCCcccccc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHH
Confidence 1111 110010 0 000000 00111234455567788888888888888888876 3344443
Q ss_pred HHHHH
Q 037592 153 NSMIS 157 (337)
Q Consensus 153 ~~l~~ 157 (337)
-.|..
T Consensus 159 m~Lak 163 (167)
T 3ffl_A 159 MLLAN 163 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33433
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.57 E-value=0.12 Score=36.28 Aligned_cols=109 Identities=7% Similarity=0.014 Sum_probs=68.1
Q ss_pred CHhHHHHHHHHHhhcCch------hhHHHHHHHHHHhcCCCCCH-HHHHHHHH------HHHhcCChHHHHHHHHHh---
Q 037592 183 DHVSFIGVLSACSHMGLI------DRGRKHFASMTKEYRIKPKI-EHYNCMVD------LLGRAGLLEEAETLIENA--- 246 (337)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~~l~~------~~~~~g~~~~A~~~~~~~--- 246 (337)
|..+|-..+...-+.|+. ++..++|++++. .++|+. ..|...+. .+...++.++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 556666666666667887 777788888765 445642 11111111 123457888888888764
Q ss_pred cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 247 DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
..+- ...|-.....-.+.|+...|.+++.+++...|.....+...+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 1221 5556666666778888888888888888877775445444443
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.51 E-value=0.2 Score=35.86 Aligned_cols=113 Identities=7% Similarity=-0.066 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC-----CCcH-------HhHHHHHHHHHhCCCHhHHHHHHHHHHhcC-CCCCH-hHH
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMP-----VRNL-------ITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDH-VSF 187 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-~~~ 187 (337)
..-+..+...|.++.|+-+.+.+. .++. .++..+..++...|++..|...|++.++.. .-+.. .+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 334555666677777666655543 2221 244555666666777777777776654321 11111 111
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcC
Q 037592 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADC 248 (337)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 248 (337)
..+. ...... .......+...-..+..+|.+.|++++|+.+++.++.
T Consensus 104 ~~~~----~~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 104 PSTG----NSASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccc----ccCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0000 000000 0001223344555577778888888888888887643
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.47 E-value=0.31 Score=47.31 Aligned_cols=157 Identities=8% Similarity=-0.018 Sum_probs=83.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHHhhchhhhh
Q 037592 26 SLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLG 102 (337)
Q Consensus 26 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 102 (337)
.++..+...+..+-+.++.... +.+......+..+|...|++++|.++|++... .+..... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~--------------~ 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA--------------V 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS--------------S
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh--------------h
Confidence 4555666677777776655443 34555556677888888888888888887643 1110000 0
Q ss_pred HHHHHHHHHhhCC--CCchhHHHHHHHHHhcCCHHHHHHHHhcCC----CCcH----HhHHHHHHHHHhCCCHhHHHHHH
Q 037592 103 KEVHCQYIRRSGC--KDVIIESALVDLYAKCGCVDFAHQIFLQMP----VRNL----ITWNSMISGFAQNGRGEEALRIF 172 (337)
Q Consensus 103 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~~~a~~~~ 172 (337)
..-+..+...... .-..-|..++..+.+.|.++.+.++-.... ..+. ..|..+...+...|++++|...+
T Consensus 882 ~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 882 LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 0000111111110 112334556666666666666655443322 1111 24666777777777777777777
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 173 DDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 173 ~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
-.+..... -...+..++...|..|.
T Consensus 962 ~~~pd~~~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 962 MVLSTTPL--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHSSS--CHHHHHHHHHHHHHHCC
T ss_pred HhCCCHHH--HHHHHHHHHHHHHhCCC
Confidence 66654322 23344555555554443
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.39 E-value=0.047 Score=45.90 Aligned_cols=67 Identities=16% Similarity=0.061 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH-----hCCccCCC
Q 037592 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY-----SGVKKMPG 322 (337)
Q Consensus 256 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 322 (337)
..++..+...|++++++..+..+...+|-+...|..++.++...|+..+|++.|+++.+ .|+.|.|.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33455566777777777777777777777667777777777777777777777776543 36665444
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.28 Score=44.82 Aligned_cols=120 Identities=15% Similarity=-0.029 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHcccCCh--hhH--HHHHHHHHcCC-ChhHHHHHHHHHhh---------cCcc-----
Q 037592 25 SSLVDMYGKCGL-VDESHRVFDKMLKKNS--VSS--SALLQGYCQTG-DFESVIRIFREMEE---------IDLF----- 84 (337)
Q Consensus 25 ~~l~~~~~~~~~-~~~A~~~~~~~~~~~~--~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~---------~~~~----- 84 (337)
..|+..+...|+ ++.|+.+|+++...++ .++ ..++..+...+ +--+|.+++.+..+ +...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555666 5889999999854433 222 23333333332 23346666655542 1111
Q ss_pred -------cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 85 -------SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 85 -------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
....-...|...|+++.|+.+-++.+...+ .+-.+|..|..+|...|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223456778999999999999998865 678999999999999999999999999885
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.24 E-value=0.11 Score=35.43 Aligned_cols=83 Identities=8% Similarity=-0.094 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhH---HHHHHHHHHhcC-C-CccchHHHHHHHHHHcCChhhHHH
Q 037592 235 LLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHV---AERVAKKIMELK-P-DCHLSYVLLDNVYRAVGRWNDAFK 307 (337)
Q Consensus 235 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 307 (337)
.+..+++-|.+.. ..++..+--.+..++.+..+... ++.++++..... | ........|..++.+.|++++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3445555555431 23666666667778888887766 889999888866 5 345678889999999999999999
Q ss_pred HHHHHHHhCC
Q 037592 308 IRTLMKYSGV 317 (337)
Q Consensus 308 ~~~~m~~~~~ 317 (337)
.++.+.+...
T Consensus 96 ~~~~lL~~eP 105 (126)
T 1nzn_A 96 YVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 9999988654
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.54 E-value=0.81 Score=32.23 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=50.5
Q ss_pred ChhhHHHHHHHHHcCCCh------hHHHHHHHHHhh---cCcc----cHHHHHH---HHHhhchhhhhHHHHHHHHHhhC
Q 037592 51 NSVSSSALLQGYCQTGDF------ESVIRIFREMEE---IDLF----SFGIVLR---ACAGLAALRLGKEVHCQYIRRSG 114 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~---~~~~----~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~ 114 (337)
|..+|-..+...-+.|++ ++..++|++... |+.. .|-.+-- .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h- 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC- 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-
Confidence 566666666666666666 666666666655 2211 1111100 1133367777777777776652
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhcC
Q 037592 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQM 144 (337)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 144 (337)
+.-..+|......-.+.|++.+|.+++.+.
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 222555555555556666666666665543
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.51 E-value=1.6 Score=35.49 Aligned_cols=170 Identities=13% Similarity=0.073 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHH----HHHHhcCCCCCHhHHHHHHHHH
Q 037592 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF----DDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
..|.++..=|.+.+++++|++++.. -...+.+.|+...|-++- +-..+.+++++......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455666778889999999987642 223455667766665544 4455667888888777777776
Q ss_pred hhcCchh-hHHHHHHHHHH---hcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCCh
Q 037592 195 SHMGLID-RGRKHFASMTK---EYR--IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268 (337)
Q Consensus 195 ~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 268 (337)
.....-+ .=.++++++++ +.| -.-++.....+...|.+.+++.+|+..|- .+..+.+..+..++.-+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-
Confidence 6544311 11223333321 223 23467777888999999999999988874 4555555666555544433332
Q ss_pred hHHHHHHHHHHhcCCCccc-hHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 269 HVAERVAKKIMELKPDCHL-SYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
|.... .....+--|.-.++...|..+++.+.+.
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 22222 2334455667778999998888777653
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.35 E-value=1.4 Score=37.74 Aligned_cols=181 Identities=10% Similarity=0.077 Sum_probs=113.3
Q ss_pred CCHHHHHHHHhcCC---------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-CCCCCHhHHHHHHHHH----hhc
Q 037592 132 GCVDFAHQIFLQMP---------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG-GTKPDHVSFIGVLSAC----SHM 197 (337)
Q Consensus 132 g~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~----~~~ 197 (337)
|+++.|++.+..+. .........++..|...|+++...+.+.-+.+. |..+. ....++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 67888888765443 123456777889999999999998888766554 33222 223333322 223
Q ss_pred CchhhH--HHHHHHHH--HhcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhc-----CCCc---hhHHHHHHHHH
Q 037592 198 GLIDRG--RKHFASMT--KEYRIKP---KIEHYNCMVDLLGRAGLLEEAETLIENAD-----CRHD---SSLWEVLLGAC 262 (337)
Q Consensus 198 ~~~~~a--~~~~~~~~--~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~---~~~~~~l~~~~ 262 (337)
...+.. ..+.+... ....+-. .......|...|...|++.+|.+++..+. ..+. ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 322221 11221110 0001111 22345678889999999999999998752 1111 23455566789
Q ss_pred hcCCChhHHHHHHHHHHh---cCCCcc----chHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 263 TTFRNAHVAERVAKKIME---LKPDCH----LSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
...+++..|..+++++.. -.+..+ ..+...+..+...++|.+|.+.|.+..+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999998753 222212 3566778888888999999988887764
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.27 E-value=3.6 Score=38.64 Aligned_cols=246 Identities=9% Similarity=-0.058 Sum_probs=115.2
Q ss_pred HHHHhcCChHHHHHHHHHcccC----Chhh--HHHHHHHHHcCCChhHHHHHHHHHhh-cC--------ccc--HHHHHH
Q 037592 29 DMYGKCGLVDESHRVFDKMLKK----NSVS--SSALLQGYCQTGDFESVIRIFREMEE-ID--------LFS--FGIVLR 91 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~----~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~~~--~~~l~~ 91 (337)
-+....|+.++++.+++..... +..+ =..+.-+.+..|..+++..++..... ++ ... -..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3455677777888887776541 2221 22333445555555567776666554 33 111 111111
Q ss_pred HHHhhch-hhhhHHHHHHHHHhhCCCCchhHH--HHHHHHHhcCCHHHHHHHHhcCC-CCcHH--hHHHHHHHHHhCCCH
Q 037592 92 ACAGLAA-LRLGKEVHCQYIRRSGCKDVIIES--ALVDLYAKCGCVDFAHQIFLQMP-VRNLI--TWNSMISGFAQNGRG 165 (337)
Q Consensus 92 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~ 165 (337)
++.-.|. -+++.+.+..++...- +...... .|...+.-.|+-+....++..+. ..+.. -.-.+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2222222 2345555555554311 1111111 23333445566555555554433 11222 223333444567777
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHH---HHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 166 EEALRIFDDMTEGGTKPDHVSFI---GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 166 ~~a~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
+.+..+.+.+... ..| ..-|. ++..+|+..|+.....+++..+..+ ...+..-...+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777777777653 122 22222 2345667777776666677777432 122333223333344446666666666
Q ss_pred HHHhc--CCCchhHHHHHHHHHhcCCCh-hHHHHHHHHHH
Q 037592 243 IENAD--CRHDSSLWEVLLGACTTFRNA-HVAERVAKKIM 279 (337)
Q Consensus 243 ~~~~~--~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 279 (337)
++.+. ..|.+..-..+.-+....|+. .+++..+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 65432 233333333333344444443 45555555554
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.12 E-value=3.9 Score=38.43 Aligned_cols=285 Identities=12% Similarity=0.000 Sum_probs=139.5
Q ss_pred hHHHHHHHHHhcCChHHH-HHHH-HHccc-CChhhHHH-HHHHHHcCCChhHHHHHHHHHhh-c-CcccHH----HHHHH
Q 037592 23 VESSLVDMYGKCGLVDES-HRVF-DKMLK-KNSVSSSA-LLQGYCQTGDFESVIRIFREMEE-I-DLFSFG----IVLRA 92 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A-~~~~-~~~~~-~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~----~l~~~ 92 (337)
+-.++.+++...|-.... +... +.+.+ .+..-+.+ ..-+.+..|+.++++.++..... . ....+. .+.-+
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 334566777777754332 2222 22222 23333333 34457778888888887776553 1 122121 12223
Q ss_pred HHhhchhhhhHHHHHHHHHhhC-------CCCchhHHHHHHHHHhcCC-HHHHHHHHhcCC-CCcHH----hHHHHHHHH
Q 037592 93 CAGLAALRLGKEVHCQYIRRSG-------CKDVIIESALVDLYAKCGC-VDFAHQIFLQMP-VRNLI----TWNSMISGF 159 (337)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~-~~~~~----~~~~l~~~~ 159 (337)
....|..+++..++...+...- .+....-..+.-+.+-.|. -+++.+.+..+. ..+.. +-.+|...+
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~ 500 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCM 500 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 3444554567777776665432 0112222334334433342 234444444433 23322 122334445
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH--HHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCC
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL--SACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGL 235 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 235 (337)
.-.|+.+-...++..+.+. . +......+. -++...|+.+.+..+.+.+... ..|....- ..+..+|+..|+
T Consensus 501 vGTgn~~ai~~LL~~~~e~-~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQET-Q--HGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHC-S--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHHHhcc-C--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCC
Confidence 6677777777777776653 1 223333333 3444678888888888887432 12322222 234556778888
Q ss_pred hHHHHHHHHHhcCCC--chhHHHHHHHHHhcCCChhHHHHHHHHHHh-cCCCccchHHHHHHHHHHcCCh-hhHHHHHHH
Q 037592 236 LEEAETLIENADCRH--DSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSYVLLDNVYRAVGRW-NDAFKIRTL 311 (337)
Q Consensus 236 ~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 311 (337)
.....+++..+...+ ++.....+.-++...|+.+.+.++++.+.+ .+|. ...-..+..+....|.. .+++.++..
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~-VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAH-VRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHH-HHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 777777887764332 233223333345556666666666654443 2222 22222333333333333 345555555
Q ss_pred HH
Q 037592 312 MK 313 (337)
Q Consensus 312 m~ 313 (337)
+.
T Consensus 655 L~ 656 (963)
T 4ady_A 655 LT 656 (963)
T ss_dssp HH
T ss_pred Hc
Confidence 43
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.88 E-value=2.8 Score=35.89 Aligned_cols=181 Identities=12% Similarity=0.101 Sum_probs=102.9
Q ss_pred CCChhHHHHHHHHHhh-----cCc----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHH----HHHhc
Q 037592 65 TGDFESVIRIFREMEE-----IDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVD----LYAKC 131 (337)
Q Consensus 65 ~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 131 (337)
.|+++.|++.+-.+.+ .|. .....++..|...++++...+.+.-+.+..... ......+++ .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 3677888877766654 222 235667778888888888877766554432211 222223332 22223
Q ss_pred CCHH--HHHHHHhcCCC---C-------cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc--CCCCC---HhHHHHHHHHH
Q 037592 132 GCVD--FAHQIFLQMPV---R-------NLITWNSMISGFAQNGRGEEALRIFDDMTEG--GTKPD---HVSFIGVLSAC 194 (337)
Q Consensus 132 g~~~--~A~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~ 194 (337)
...+ .-..+.+.... . .......|...|...|++.+|.+++..+... |..+. ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 22333333331 1 1122355677788888888888888887543 22221 13455556777
Q ss_pred hhcCchhhHHHHHHHHHHh-cCC--CCC--HHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 195 SHMGLIDRGRKHFASMTKE-YRI--KPK--IEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
...+++..|..+++.+... ... +|+ ...+..++..+...+++.+|-+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7888888888888776321 111 222 234556666777778888887776665
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.67 E-value=5.6 Score=38.71 Aligned_cols=143 Identities=11% Similarity=-0.004 Sum_probs=84.1
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC---------------------
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR--------------------- 147 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------- 147 (337)
++..+...+..+.+.++. .. .+.+......+..+|...|++++|.+.|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~----~~-~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHH----HH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHh----hh-ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455555555554432 11 2234444455677888888888888888776410
Q ss_pred -----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH----hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC
Q 037592 148 -----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH----VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP 218 (337)
Q Consensus 148 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 218 (337)
-..-|.-++..+.+.|.++.+.++-....+...+-+. ..|..+..++...|++++|...+-.+. .. ..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~--~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TT--PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HS--SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CH--HH
Confidence 0122555667777778888777777666554221111 145667777778888888877776663 22 23
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A 239 (337)
-......|+..++..|+.+.-
T Consensus 970 r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhh
Confidence 345566666666666555443
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.63 E-value=2.3 Score=34.22 Aligned_cols=171 Identities=11% Similarity=0.063 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHH----HHHHHhcCCCCCHhHHHHHHHHH
Q 037592 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI----FDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
..|.++..=|.+.+++++|++++.. -...+.+.|+...|-++ .+-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455666777888888888887642 22345566777666554 44455667888888877777766
Q ss_pred hhcCchh-hHHHHHHHHHH---hcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcC---
Q 037592 195 SHMGLID-RGRKHFASMTK---EYR--IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF--- 265 (337)
Q Consensus 195 ~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~--- 265 (337)
.....-+ .=.++++++++ +.| ..-++.....+...|.+.|++.+|+..|- .+...++..+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCC
Confidence 5533211 12333444332 112 22467788889999999999999998776 43332455555555433332
Q ss_pred CChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 266 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
|...++- ......+--|.-.|+...|..+++...+.
T Consensus 182 ~~~~e~d--------------lf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 182 IEDSTVA--------------EFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCHHHHH--------------HHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchHH--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3332221 11223344566678888998888877543
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.38 E-value=2.6 Score=33.97 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=16.7
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHh
Q 037592 117 DVIIESALVDLYAKCGCVDFAHQIFL 142 (337)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 142 (337)
++..+..+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 45566666666666666666666654
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.35 E-value=0.96 Score=31.02 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHh-cCCC--chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 217 KPKIEHYNCMVDLLGRAGL---LEEAETLIENA-DCRH--DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
.|++.+-..+.-++.+..+ ..+++.+++.+ ...| ....+-.+.-++.+.|+++.|.+..+.+++..|++..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4566666666666666654 34566666653 2223 22334455567888888888888888888888886443
No 253
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.25 E-value=1.9 Score=32.18 Aligned_cols=180 Identities=10% Similarity=0.050 Sum_probs=95.9
Q ss_pred HHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhH
Q 037592 42 RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121 (337)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 121 (337)
.+.+.+..++...-...+..+.+.|..+..-.+.+.+..+|...-...+.++...++. .+...+..++. .++..+-
T Consensus 23 ~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr 98 (211)
T 3ltm_A 23 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVR 98 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHH
Confidence 3333444455555555555555555533333333333335555555555555555543 33333333332 2556666
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchh
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 201 (337)
...+.++.+.|+.+....+.+-+..++...-...+.++...|.. ++...+..+.+ .++...-...+.++.+.+. +
T Consensus 99 ~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 99 QSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 66677777777655444455555567766666666666666654 34455555543 3455555556666666665 4
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
.+...+..++.+ ++..+-...+.++.+.+
T Consensus 174 ~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 174 RVRAAMEKLAET----GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHH----CCHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHhC----CCHHHHHHHHHHHHhcC
Confidence 555666666443 45556656666665544
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=93.17 E-value=1.1 Score=28.89 Aligned_cols=73 Identities=11% Similarity=-0.044 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
++|.-+-+++...+. ...+-.+-+..+.+.|++++|..+.+....||..+|.+|... +.|..+++..-+..+.
T Consensus 23 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 23 EEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345555555555432 222222223445566666666666666666666665555443 4454454444444443
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=92.98 E-value=1.1 Score=28.78 Aligned_cols=72 Identities=10% Similarity=-0.041 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (337)
++|.-+-+++...+. ...+-.+-+..+.+.|++++|..+.+....||..+|.+|... +.|..+++..-+..+
T Consensus 24 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 24 EEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 344444455544432 222222223444555555555555555555555555555433 334444444444333
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.60 E-value=1.8 Score=30.11 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHh-cCCC--chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 217 KPKIEHYNCMVDLLGRAGL---LEEAETLIENA-DCRH--DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
.|+..+-..+.-++.+..+ ..+++.+++.+ ...| .......+.-++.+.|+++.|.++.+.+++..|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 5677777777777777665 44566777764 2223 22334445577999999999999999999999997443
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.53 E-value=0.86 Score=38.23 Aligned_cols=62 Identities=8% Similarity=-0.061 Sum_probs=39.3
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH--------hcCCCchh
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN--------ADCRHDSS 253 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~~~~~~ 253 (337)
++..+...|+++++...+..++... +.+...+..+|.+|.+.|+..+|.+.|+. +|..|...
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 4455556677777776666665443 45666777777777777777777766653 35666554
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.33 E-value=4.4 Score=33.91 Aligned_cols=162 Identities=10% Similarity=-0.047 Sum_probs=92.7
Q ss_pred ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-C---CchhHHHHHHHHHhcC-CHHHHHHHHhcCC---CCcHHhH---
Q 037592 84 FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K---DVIIESALVDLYAKCG-CVDFAHQIFLQMP---VRNLITW--- 152 (337)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~--- 152 (337)
.+...+...|.+.|+.++..+++......=.. + .......+++.+.... ..+.-.++..+.. ..+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778888888888888877665432111 1 2344456666665543 3333333333333 1111222
Q ss_pred ---HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH-----hHHHHHHHHHhhcCchhhHHHHHHHHHHhc-CCCCCHHHH
Q 037592 153 ---NSMISGFAQNGRGEEALRIFDDMTEGGTKPDH-----VSFIGVLSACSHMGLIDRGRKHFASMTKEY-RIKPKIEHY 223 (337)
Q Consensus 153 ---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 223 (337)
.-++..|...|++.+|..++.++.+.-.+.|. ..+..-+..|...+++.++...+....... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 24678888889999988888888764222222 234444566778888888888887764322 222343332
Q ss_pred HH----HHHHHH-hcCChHHHHHHHHH
Q 037592 224 NC----MVDLLG-RAGLLEEAETLIEN 245 (337)
Q Consensus 224 ~~----l~~~~~-~~g~~~~A~~~~~~ 245 (337)
.. -+..+. ..+++..|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 21 223455 67888888777644
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.77 E-value=2.3 Score=29.56 Aligned_cols=71 Identities=6% Similarity=-0.104 Sum_probs=53.8
Q ss_pred cCCCchhHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCC-ccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 247 DCRHDSSLWEVLLGACTTFRN---AHVAERVAKKIMELKPD-CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+..|+..+--.+..++.+..+ ..+++.++++.....|. .......|..++.+.|++++|.++.+.+.+...
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 445566655555556666554 55788899999887774 456778889999999999999999999988554
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.14 E-value=3.9 Score=34.79 Aligned_cols=96 Identities=9% Similarity=-0.092 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCC------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC-CCCCHhHHHHH-
Q 037592 119 IIESALVDLYAKCGCVDFAHQIFLQMP------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDHVSFIGV- 190 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l- 190 (337)
.+...+...|.+.|+++.|.+.+.++. ..-...+...+..+...+++..+...+.++...- -.++....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356678888888888888888888776 1234567777788888888888888888775431 11222222211
Q ss_pred ---HHHHhhcCchhhHHHHHHHHHHhc
Q 037592 191 ---LSACSHMGLIDRGRKHFASMTKEY 214 (337)
Q Consensus 191 ---~~~~~~~~~~~~a~~~~~~~~~~~ 214 (337)
...+...+++..|.+.|-++....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 122335677888877777765543
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.01 E-value=2.1 Score=27.68 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=50.3
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 243 (337)
+.-+..+-++.+......|+.....+.+.+|.+.+++..|.++++.+..+.| ....+|..+++ +-.-++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq---------ElkPtl 93 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ---------ELRPTL 93 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH---------HHhhHH
Confidence 4456666777777777888888888888888888888888888888744433 33445665543 334455
Q ss_pred HHhcC
Q 037592 244 ENADC 248 (337)
Q Consensus 244 ~~~~~ 248 (337)
+++|+
T Consensus 94 ~ELGI 98 (109)
T 1v54_E 94 NELGI 98 (109)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 55554
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.71 E-value=1.6 Score=28.24 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=27.9
Q ss_pred HHHHHHHHc----ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHH
Q 037592 39 ESHRVFDKM----LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLR 91 (337)
Q Consensus 39 ~A~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 91 (337)
+..+-++.+ .-|++....+.+.+|-+.+++..|+++++-++. +...+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344444444 334555566666666666666666666665554 22333555443
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.61 E-value=2.1 Score=29.33 Aligned_cols=79 Identities=5% Similarity=-0.092 Sum_probs=55.9
Q ss_pred HHHHHHH-hcCCCchhHHHHHHHHHhcCC---ChhHHHHHHHHHHhcCCC-ccchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 239 AETLIEN-ADCRHDSSLWEVLLGACTTFR---NAHVAERVAKKIMELKPD-CHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 239 A~~~~~~-~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
.++-|.+ .+..|+..+--.+..++.+.. +...++.++++..+..|. ....+..|..++.+.|++++|.++.+.+.
T Consensus 26 l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 26 LRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334433 344455555444455555554 456788999999887784 36688889999999999999999999988
Q ss_pred HhCC
Q 037592 314 YSGV 317 (337)
Q Consensus 314 ~~~~ 317 (337)
+...
T Consensus 106 ~~eP 109 (134)
T 3o48_A 106 EHER 109 (134)
T ss_dssp TTCT
T ss_pred hhCC
Confidence 7544
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.54 E-value=4.2 Score=30.29 Aligned_cols=170 Identities=14% Similarity=0.043 Sum_probs=91.3
Q ss_pred cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHH
Q 037592 81 IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFA 160 (337)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 160 (337)
++...-...+..+...+.. .+...+.+++. .++..+-...+.++.+.|..+....+.+.+..++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5555555555556555553 34444434443 2455566666667777776554445555555677766666667776
Q ss_pred hCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037592 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240 (337)
Q Consensus 161 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 240 (337)
..++.+ +...+..+.. .++...-...+.++.+.|..+ +...+..++. .++..+....+.++.+.+. .++.
T Consensus 107 ~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~~~~ 176 (211)
T 3ltm_A 107 QIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG-ERVR 176 (211)
T ss_dssp HHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-HHHH
T ss_pred HhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-hhHH
Confidence 666643 4444444443 345555555566666666543 3444444432 4566666667777777766 3444
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhc
Q 037592 241 TLIENADCRHDSSLWEVLLGACTT 264 (337)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~ 264 (337)
..+.++-..++...-...+.++..
T Consensus 177 ~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 177 AAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Confidence 444443223344333344444433
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.23 E-value=4.4 Score=34.42 Aligned_cols=94 Identities=6% Similarity=-0.095 Sum_probs=70.3
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCcHHhHH----
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCGCVDFAHQIFLQMP-----VRNLITWN---- 153 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~---- 153 (337)
+...+...+.+.|+++.|.+.+.++......+. ...+-.+++.+...+++..+...+.++. .++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 677899999999999999999999998765433 4666678889999999999998888765 22322211
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 154 SMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
.-+..+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1223345689999999998887654
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.69 E-value=9.7 Score=31.85 Aligned_cols=277 Identities=10% Similarity=0.037 Sum_probs=163.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccC--------ChhhHHHHHHHHHcC-CChhHHHHHHHHHhh---cCcccHH--
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKK--------NSVSSSALLQGYCQT-GDFESVIRIFREMEE---IDLFSFG-- 87 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~---~~~~~~~-- 87 (337)
.....|...|.+.|+.++..+++....+- ....-..++..+... +..+.-.++..+..+ ....+|-
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999887221 234466777777664 444555555555554 2223441
Q ss_pred ----HHHHHHHhhchhhhhHHHHHHHHHhhCCCC-----chhHHHHHHHHHhcCCHHHHHHHHhcCC------CCcHHhH
Q 037592 88 ----IVLRACAGLAALRLGKEVHCQYIRRSGCKD-----VIIESALVDLYAKCGCVDFAHQIFLQMP------VRNLITW 152 (337)
Q Consensus 88 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~ 152 (337)
.++..|...|++.+|..++.++.+.-...| ..++-.-+..|...+++.++...+.+.. .+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 577889999999999999999988644433 2344555677888999999888886654 1333221
Q ss_pred ----HHHHHHHH-hCCCHhHHHHHHHHHHhc-C-C-CC---CHhHHHHHHHHHhhcCchhhHHHHHH-HHHHhcCCCCCH
Q 037592 153 ----NSMISGFA-QNGRGEEALRIFDDMTEG-G-T-KP---DHVSFIGVLSACSHMGLIDRGRKHFA-SMTKEYRIKPKI 220 (337)
Q Consensus 153 ----~~l~~~~~-~~~~~~~a~~~~~~m~~~-~-~-~p---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 220 (337)
..-...+. ..++|..|...|-+..+. . . .| +...|..+ .+... ++..+-..++. ...... ..|..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~-~~pei 256 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITY-SGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTT-CSHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhcccccccc-CCccH
Confidence 12233456 789999999888776432 1 0 11 11223222 22222 22222222222 211211 24555
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh------cCCCccchHHHH
Q 037592 221 EHYNCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIME------LKPDCHLSYVLL 292 (337)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l 292 (337)
..+..++.+| ..+++.+...+++... ...|.... .....+++.+.+ ..|-....+..+
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~-------------~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~i 322 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQ-------------AHLGTLYDTMLEQNLCRIIEPYSRVQVAHV 322 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHH-------------HHHHHHHHHHHHHHHHHHHTTCSEEEHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHH-------------HHHHHHHHHHHHHHHHHHhHhhceeeHHHH
Confidence 5566666654 5668877777777643 22333211 111122222222 557667778887
Q ss_pred HHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 293 DNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 293 ~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
...+.- ..+++...+-+|...|.
T Consensus 323 A~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 323 AESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHCc--CHHHHHHHHHHHHHCCC
Confidence 776643 67899999999988765
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.64 E-value=1.9 Score=33.72 Aligned_cols=58 Identities=17% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHHHhcCChHHHHHHHHH-hcCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 228 DLLGRAGLLEEAETLIEN-ADCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
..+.+.|++++|+..... ++..| |...-..++..+|-.|+++.|.+-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345667778887777654 55444 34444556677778888888888888777777773
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.41 E-value=14 Score=33.18 Aligned_cols=299 Identities=11% Similarity=-0.014 Sum_probs=142.3
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC-------------ChhhHHH------------
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-------------NSVSSSA------------ 57 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------~~~~~~~------------ 57 (337)
+.+-.+|+...+.|.-.....+. -+......|+...|..+...+... ++.....
T Consensus 137 ~~c~~l~~~~~~~g~lt~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~ 215 (618)
T 1qsa_A 137 NACDKLFSVWRASGKQDPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTR 215 (618)
T ss_dssp THHHHHHHHHHHTTCSCHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhH
Confidence 34556777777666333333333 335566777777777776665111 1111111
Q ss_pred -----HHHHHHcCCChhHHHHHHHHHhh---cCccc----HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHH
Q 037592 58 -----LLQGYCQTGDFESVIRIFREMEE---IDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV 125 (337)
Q Consensus 58 -----l~~~~~~~g~~~~A~~~~~~~~~---~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (337)
.+.-+.+ .+.+.|...+..... .+... ...+.......+...++...+...... ..+.....-.+
T Consensus 216 ~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~ 292 (618)
T 1qsa_A 216 QMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHH
Confidence 1111222 255666666666643 11111 112222222333244455555543332 23333344445
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCc---HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhh
Q 037592 126 DLYAKCGCVDFAHQIFLQMPVRN---LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202 (337)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 202 (337)
....+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|+.+.+. . ..|..+. ..+.|..-.
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~lA--a~~Lg~~~~ 365 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMVA--AQRIGEEYE 365 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHHH--HHHTTCCCC
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHHH--HHHcCCCCC
Confidence 55566788888888888887421 222223455667778888888888887641 1 2233222 222332100
Q ss_pred HHHHHHHHHHhcCCCC---CH---HHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 203 GRKHFASMTKEYRIKP---KI---EHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
. . . . ...+ .. ..-..-+..+...|....|...+..+....+......+.......|.++.++....
T Consensus 366 ~-~----~-~--~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 366 L-K----I-D--KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp C-C----C-C--CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C-C----C-C--CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0 0 0 0 0000 00 01112244566778888888877765333333333444444566777777665554
Q ss_pred HHHhcCC---CccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccC
Q 037592 277 KIMELKP---DCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 277 ~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 320 (337)
.....+. ..+..|..++..+.+...++.++-.---..++++.|.
T Consensus 438 ~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 438 AGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 3322110 0122355556555555555554433233345666553
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.34 E-value=4.6 Score=27.74 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=53.3
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 243 (337)
|.-+..+-++.+....+.|+.......+.+|.+.+++..|.++++-+..+. .+...+|..++ ++-.-++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~l---------qElkPtl 136 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI---------QELRPTL 136 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHH---------HHHhhHH
Confidence 444566667777777888999999999999999999999999999884443 33344666655 3445556
Q ss_pred HHhcCC
Q 037592 244 ENADCR 249 (337)
Q Consensus 244 ~~~~~~ 249 (337)
+++|+.
T Consensus 137 ~ELGI~ 142 (152)
T 2y69_E 137 NELGIS 142 (152)
T ss_dssp HHHTCC
T ss_pred HHhCCC
Confidence 666643
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=88.28 E-value=6.1 Score=29.36 Aligned_cols=29 Identities=14% Similarity=-0.065 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 252 SSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 252 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
+..|......+...|++.+|..+|+..++
T Consensus 115 AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 115 SLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555566666666666666655
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.23 E-value=3.7 Score=26.45 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=57.3
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 176 (337)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.++-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456677777666665533 22222223445678899999999988888888888877765 57788888888777776
Q ss_pred hcCCCCCHhHH
Q 037592 177 EGGTKPDHVSF 187 (337)
Q Consensus 177 ~~~~~p~~~~~ 187 (337)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 654 3344343
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.94 E-value=3.9 Score=26.39 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=51.7
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 176 (337)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.++-
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 446677776666655432 22222223345677888888888888888888888877765 45677777777776666
Q ss_pred hcC
Q 037592 177 EGG 179 (337)
Q Consensus 177 ~~~ 179 (337)
.+|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 554
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.29 E-value=7.1 Score=28.71 Aligned_cols=49 Identities=6% Similarity=0.035 Sum_probs=20.8
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCC
Q 037592 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164 (337)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (337)
++..+-...+.++.+.|+.+....+...+..++...-...+.++...++
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3444444444445554443333333333334444444444444444443
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.70 E-value=15 Score=31.88 Aligned_cols=181 Identities=10% Similarity=0.001 Sum_probs=93.3
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH-------HhH-HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh----
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNL-------ITW-NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV---- 185 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---- 185 (337)
..++|.+++.|...+.++.|..+..+..-|.. ..| ..+...+.-.+++.+|.+.+......-+ ++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap-~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP-HNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS-CSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-cchhhhhH
Confidence 46777888889999999999999988874421 122 2345667778899999988888776422 2221
Q ss_pred ---HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHH
Q 037592 186 ---SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262 (337)
Q Consensus 186 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 262 (337)
.+..++-+-.-.|+...- .+| ...+.......|..|..++ +.|++++-...+++-. ..+
T Consensus 310 r~~a~K~lI~V~LLlG~iP~r-~lf----~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~~F 371 (523)
T 4b4t_S 310 LQQSNKLHCCIQLLMGDIPEL-SFF----HQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------QLL 371 (523)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHH----TTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------HHH
T ss_pred HHHHHHHHHhHHhhcCCCCCh-HHh----hchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------cee
Confidence 111111111113444331 111 1111111234466666665 5677766665555421 112
Q ss_pred hcCCChhHHHHHHHH----HHh-cCCC-ccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 263 TTFRNAHVAERVAKK----IME-LKPD-CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~----~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
.+.|.+--..++-.- ... +... +......+.... .....++|..+.-.|...|.-
T Consensus 372 ~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL-~L~s~eeaE~iVAkmI~dG~I 432 (523)
T 4b4t_S 372 LKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKL-NLDSEQTVEYMVSRAIRDGVI 432 (523)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHH-HHHHSSCHHHHHHHHHHHTSS
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHh-CCCCHHHHHHHHHHHHHcCCc
Confidence 333343333322222 222 2221 122333332222 223356799999999988764
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.93 E-value=11 Score=29.51 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=31.5
Q ss_pred HHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
...+.|++++|+.....-++.. +-|...-..++..+|-.|++++|.+-++...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455666777766666665542 2244444455566666677777776666664
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.70 E-value=9.2 Score=36.35 Aligned_cols=104 Identities=6% Similarity=-0.204 Sum_probs=63.4
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc--CCC-----------------
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD--CRH----------------- 250 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----------------- 250 (337)
++..|...|..+-|.++.. -++.++..-..++.+|...|++++|...|++.. ...
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 5556666777665544322 234455555567888999999999999998741 110
Q ss_pred ------chhHHHHHHHHHhcCCChhHHHHHHHHHHh-cCCCccc----hHHHHHHHHHHc
Q 037592 251 ------DSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHL----SYVLLDNVYRAV 299 (337)
Q Consensus 251 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~----~~~~l~~~~~~~ 299 (337)
....|..++..+-+.+-++.+.++.+.+++ ..++++. .|..+..+.+..
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 011355666667777777777777777776 4444432 444555544443
No 277
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.44 E-value=4.7 Score=27.72 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHhc-C-ChHHHHHHHHHc----ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHH
Q 037592 22 VVESSLVDMYGKC-G-LVDESHRVFDKM----LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRA 92 (337)
Q Consensus 22 ~~~~~l~~~~~~~-~-~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 92 (337)
.-+..--..|... . |.=+..+-++.+ .-|++....+.+.+|-+.+++..|+++|+-.+. +...+|..++.-
T Consensus 52 EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 52 EEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 3344333344433 3 344555555555 456777888888888888888888888888776 444457776654
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.15 E-value=10 Score=27.77 Aligned_cols=155 Identities=13% Similarity=0.100 Sum_probs=97.0
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhc
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLA 97 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 97 (337)
.+|..+-...+..+.+.+..+....+.+.+..++...-...+.++...|..+..-.+.+.+..++...-...+.++...+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 46677777777888888876655666666666777776677777777776544444444333377777777777777777
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
+.+ +...+..++. .++..+-...+.++.+.|..+....+..-+..++...-...+.++...|. .++...+..+.+
T Consensus 105 ~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 105 DER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp CGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred cHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 653 4444444443 36677777777888887775444444444456666666666666666554 345555555544
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=79.80 E-value=6.3 Score=27.79 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=37.7
Q ss_pred HHHHHHHHcccCC-----hhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHH
Q 037592 39 ESHRVFDKMLKKN-----SVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRAC 93 (337)
Q Consensus 39 ~A~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 93 (337)
++.++|..|.... +.-|......+-..|++++|.++|+.-.+........|...+
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 3777777775442 344777777778888888888888887775555555555544
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=78.23 E-value=15 Score=25.84 Aligned_cols=49 Identities=8% Similarity=0.004 Sum_probs=32.4
Q ss_pred HHHHHHHHHh--cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCcc
Q 037592 271 AERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 271 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 319 (337)
+..+|..+.. +.-..+..|...+..+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5666666655 445555666677777777777777777777766666555
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.86 E-value=15 Score=31.95 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhhcCc-cc-------HHHHHHHHHhhchhhhhHHHHHHHHHhhC
Q 037592 52 SVSSSALLQGYCQTGDFESVIRIFREMEEIDL-FS-------FGIVLRACAGLAALRLGKEVHCQYIRRSG 114 (337)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 114 (337)
...+|.+++.|...+.++.|..+..+..-|.. .. +..+.+.+.-.+++.+|.+.+..+....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34577888888888888888888888765432 21 12244556667778888877777776544
No 282
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.41 E-value=28 Score=28.34 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=80.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--------cCcccHHHHHHHH
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE--------IDLFSFGIVLRAC 93 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~ 93 (337)
-+|.++..-|.+.+++++|++++-.- ...+.+.|+...|-++..-+.+ +|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45677777777888888888776443 1223333444333333322222 3333334444443
Q ss_pred Hhhchhh-hhHHHHHHHH----Hhh--CCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHh
Q 037592 94 AGLAALR-LGKEVHCQYI----RRS--GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166 (337)
Q Consensus 94 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (337)
.....-+ .-..+.++++ +.| ..-++.....+...|.+.+++.+|...|---..+....+..++.-+...+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 3322111 1122222222 222 22466777788888888888888888874322333345544443333333222
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
++ +...-..++ -|...++...|..+++..++
T Consensus 185 e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred cH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 11 111222223 34456777777776665543
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=76.26 E-value=24 Score=27.03 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=42.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh-----cC-----cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE-----ID-----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
-++.+....++++|++++++..+ ++ .......+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 45677788888888888887765 21 111122222222222222333333333 22 2344444555666
Q ss_pred HHhcCCHHHHHHHHh
Q 037592 128 YAKCGCVDFAHQIFL 142 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~ 142 (337)
+.+.|+-++|.++|-
T Consensus 101 L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 101 MIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCChhHHHHHHH
Confidence 677777777777664
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.66 E-value=29 Score=26.74 Aligned_cols=21 Identities=14% Similarity=-0.015 Sum_probs=12.8
Q ss_pred HHHHHHhcCChHHHHHHHHHc
Q 037592 27 LVDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 27 l~~~~~~~~~~~~A~~~~~~~ 47 (337)
.+...++.|+.+....+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGG 28 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 444556667776666666654
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.54 E-value=25 Score=26.07 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH-hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH-VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 219 (337)
.|-..+..+ ..+...++.++|..|...|+-... ..|......+...|++.+|..+|+.-++. +-.|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 344444433 245577888999999888776544 35666677777889999999999888654 55554
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.29 E-value=23 Score=25.37 Aligned_cols=30 Identities=7% Similarity=0.028 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
-+..|......+-..|++..|.++|+..++
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455556666666777777777777666
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.06 E-value=30 Score=26.65 Aligned_cols=42 Identities=7% Similarity=-0.093 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCCchH---hHHHHHHHHHhcCChHHHHHHHHHc
Q 037592 6 KEVHAKVITLGLCGNVV---VESSLVDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 6 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~ 47 (337)
.++++.+++.|..++.. .-.+.+...+..|+.+-+..+++.-
T Consensus 18 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 35666777776555432 1124556667778877777666654
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.88 E-value=13 Score=26.67 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=40.0
Q ss_pred HHHHHHHHHcccC-----ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHH
Q 037592 38 DESHRVFDKMLKK-----NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACA 94 (337)
Q Consensus 38 ~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 94 (337)
+.+.++|..|... -+..|......+-..|++.+|.++|+.-.+........|-..+.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~ 138 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHR 138 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3366677777444 34457777888888899999999999888855555555555543
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.81 E-value=30 Score=32.90 Aligned_cols=53 Identities=9% Similarity=0.077 Sum_probs=39.4
Q ss_pred HHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 27 LVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 27 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
++..+...|.++-|.++...+. .++..-..+..+|...|++++|..+|+++-.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 5667777888887776554443 4555556788889999999999999988754
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=71.47 E-value=22 Score=27.21 Aligned_cols=86 Identities=17% Similarity=0.084 Sum_probs=48.9
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHhc--CCCC----CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037592 155 MISGFAQNGRGEEALRIFDDMTEG--GTKP----DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (337)
-+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+++ .. .+++......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHHH
Confidence 355667777777777777765432 2221 1122222333333333333444455554 32 455666677778
Q ss_pred HHHhcCChHHHHHHHH
Q 037592 229 LLGRAGLLEEAETLIE 244 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~ 244 (337)
.+.+.|+.++|.++|=
T Consensus 100 ~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHH
Confidence 8889999999998874
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.51 E-value=20 Score=27.13 Aligned_cols=30 Identities=17% Similarity=0.027 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
-+..|......+...|++.+|..+|+..++
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344456666666666777777777776666
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=67.61 E-value=13 Score=28.09 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=41.0
Q ss_pred HHHHHHHHHcccC-----ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHH
Q 037592 38 DESHRVFDKMLKK-----NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACA 94 (337)
Q Consensus 38 ~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 94 (337)
+.+.++|..|... -...|......+-..|++.+|..+|+.-.+........|...+.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~ 192 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQ 192 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 5667788777444 34457778888888999999999999888855555555655543
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=67.17 E-value=30 Score=24.34 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCcH---HhHHHHHHHHHhCCC--HhHHHHHHHHHHhcCCCC
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNL---ITWNSMISGFAQNGR--GEEALRIFDDMTEGGTKP 182 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p 182 (337)
...++.=|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 35577788888999999999998886632 334444555554332 456677777777665543
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=66.47 E-value=31 Score=24.26 Aligned_cols=71 Identities=13% Similarity=0.240 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcccCC---hhhHHHHHHHHHcCCC--hhHHHHHHHHHhhcCcccHHHHHHHHH
Q 037592 24 ESSLVDMYGKCGLVDESHRVFDKMLKKN---SVSSSALLQGYCQTGD--FESVIRIFREMEEIDLFSFGIVLRACA 94 (337)
Q Consensus 24 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~l~~~~~ 94 (337)
...++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+......+-..+..++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~ 87 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 87 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 5667888888999999999999986552 2334444555555332 345667777776655555555555543
No 295
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=66.14 E-value=44 Score=25.90 Aligned_cols=181 Identities=9% Similarity=-0.078 Sum_probs=73.3
Q ss_pred ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHHhhchhhhhH-HHHHHHHH-hhCCCCchhHHHH
Q 037592 48 LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGLAALRLGK-EVHCQYIR-RSGCKDVIIESAL 124 (337)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~-~~~~~~~~~~~~l 124 (337)
..++...-...+.++...|. ..+...+..+.. ++...-...+.++...+....+. .++..+.+ .-..++..+....
T Consensus 33 ~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a 111 (280)
T 1oyz_A 33 DDHNSLKRISSARVLQLRGG-QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATA 111 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHccCC-chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 33444444444444444443 233333333333 44444444455555544322221 11111110 0012444444445
Q ss_pred HHHHHhcCC-----HHHHHHHHh-cCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC
Q 037592 125 VDLYAKCGC-----VDFAHQIFL-QMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198 (337)
Q Consensus 125 ~~~~~~~g~-----~~~A~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 198 (337)
+.++...|. ...+...+. .+..++...-...+.++...|+.+ +...+..+.+ .++...-...+.++...+
T Consensus 112 ~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 112 IESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhc
Confidence 555544431 223333332 233556555555555666555532 3334444433 234333333334444433
Q ss_pred -chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 037592 199 -LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 199 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
....+...+..++. .++..+....+.++.+.|+..
T Consensus 188 ~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~~ 223 (280)
T 1oyz_A 188 YDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDKR 223 (280)
T ss_dssp CCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCGG
T ss_pred cCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCHh
Confidence 12233333333322 345555555555566555433
No 296
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=62.85 E-value=43 Score=25.09 Aligned_cols=47 Identities=11% Similarity=0.218 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHhcCCCCCH-H-----HHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 200 IDRGRKHFASMTKEYRIKPKI-E-----HYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~-~-----~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
++.|+-+|+.+.+...++.+. . .--..+..|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 466777777774443221111 1 1123345677888888888888875
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=60.45 E-value=37 Score=23.05 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCcH---HhHHHHHHHHHhCCC--HhHHHHHHHHHHhcCCCC
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNL---ITWNSMISGFAQNGR--GEEALRIFDDMTEGGTKP 182 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p 182 (337)
...++.=|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34577778888999999999988876632 334444455555432 456777777777666543
No 298
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=59.94 E-value=38 Score=23.49 Aligned_cols=63 Identities=8% Similarity=0.105 Sum_probs=38.6
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 037592 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 173 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
+.+.+.|.+++..-.. ++..+...+..-.|.++++.+ +..+...+..|...-+..+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l-~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKAL-EGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHH-GGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHH-HHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 3455667776655432 344455556666788888877 44455556666666677777776543
No 299
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=57.10 E-value=81 Score=25.95 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=24.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
.+..|..+...+.+.+++.+|++.+.+.-.
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 466678888888899999999998887654
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.72 E-value=68 Score=24.98 Aligned_cols=20 Identities=5% Similarity=-0.280 Sum_probs=10.9
Q ss_pred HHHHHhcCChHHHHHHHHHc
Q 037592 28 VDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~ 47 (337)
+...+..|+.+.+..+++.-
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g 54 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAG 54 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCC
Confidence 34445566666655555543
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.52 E-value=47 Score=22.49 Aligned_cols=71 Identities=13% Similarity=0.240 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcccCC---hhhHHHHHHHHHcCCC--hhHHHHHHHHHhhcCcccHHHHHHHHH
Q 037592 24 ESSLVDMYGKCGLVDESHRVFDKMLKKN---SVSSSALLQGYCQTGD--FESVIRIFREMEEIDLFSFGIVLRACA 94 (337)
Q Consensus 24 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~l~~~~~ 94 (337)
...++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+......+-..+..++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~ 85 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 85 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 4667888888999999999999986552 2334444455555432 355677777776655555555555543
No 302
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=51.95 E-value=13 Score=21.29 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCCccchHHHHHHHH-HHcCChhhHHHHHHHHHHhCCccC
Q 037592 273 RVAKKIMELKPDCHLSYVLLDNVY-RAVGRWNDAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~~~~~~ 320 (337)
+-...+.+..|+ ... ..+-.++ ...|+.+.|+..+-+|...+.+|+
T Consensus 11 e~l~~L~emFP~-ld~-~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 11 EDLKAIQDMFPN-MDQ-EVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHCSS-SCH-HHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHCCC-CCH-HHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 333444455666 222 2222233 334667777777777666555554
No 303
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=50.44 E-value=61 Score=22.57 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=36.7
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 037592 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 173 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
+.+.+.|.+++..-. .++..+...+..-.|.++++.+. ..+...+..|...-+..+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIR-QKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHH-HHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHH-HhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 345566766554433 34445555556677888888773 3354556666666677777776543
No 304
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=49.90 E-value=81 Score=26.31 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCCchHh--HHHHHHHHHhcCChHHHHHHHHHc
Q 037592 7 EVHAKVITLGLCGNVVV--ESSLVDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~ 47 (337)
++++.+++.|..|+... ..+.+...+..|+.+-+..+++.-
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g 70 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 45555666665554321 223445555667766666666553
No 305
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=49.37 E-value=20 Score=20.49 Aligned_cols=36 Identities=3% Similarity=-0.060 Sum_probs=26.3
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHH-HhcCCh
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMY-GKCGLV 37 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 37 (337)
.++|...|-.|++..--++.-+|...+..+ ++..++
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcc
Confidence 468889999988876555667788888887 555443
No 306
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=48.83 E-value=33 Score=21.89 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHH
Q 037592 35 GLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVI 72 (337)
Q Consensus 35 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 72 (337)
.+.+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46777888888777777777888888777667665553
No 307
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=48.52 E-value=47 Score=23.58 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=43.8
Q ss_pred hHHHHHHHH-HHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChH
Q 037592 166 EEALRIFDD-MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY--RIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 166 ~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
+.+++-+.+ +.+.|.+++..- ..++..+...+..-.|.++++.+ +.. +...+..|...-+..+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l-~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEI-KQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHH-HHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHH-HhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444444443 455677776543 33556666667777888888888 443 44556666666677888777544
No 308
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=47.90 E-value=82 Score=23.30 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=8.4
Q ss_pred HHHhcCChHHHHHHHHH
Q 037592 229 LLGRAGLLEEAETLIEN 245 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~ 245 (337)
.|.+.|.+++|.++|++
T Consensus 126 VCiekg~Fk~A~eiLkr 142 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFER 142 (211)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHH
Confidence 34444555555555544
No 309
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=46.27 E-value=76 Score=22.47 Aligned_cols=50 Identities=6% Similarity=-0.031 Sum_probs=32.8
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHh--hCCCCchhHHHHHHHHHhcCCH
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRR--SGCKDVIIESALVDLYAKCGCV 134 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 134 (337)
.-..++..+...+..-.|.++++.+.+. ++..+..|...-++.+...|-+
T Consensus 34 qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 34 QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 4455666666666777788888888777 6655655555556666666643
No 310
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.35 E-value=1.1e+02 Score=23.85 Aligned_cols=22 Identities=5% Similarity=-0.079 Sum_probs=12.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC
Q 037592 124 LVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
.+...+..|+.+-+..+++.-.
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~~ga 86 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLFSGL 86 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHCCC
Confidence 3444556677666666665433
No 311
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=45.09 E-value=1.4e+02 Score=25.17 Aligned_cols=30 Identities=7% Similarity=0.144 Sum_probs=24.1
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
.+..|..+...+.+.+++.+|+..|.+.-.
T Consensus 317 HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 317 HIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 466678888888899999999988887654
No 312
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=44.87 E-value=16 Score=20.87 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=15.4
Q ss_pred CchhhHHHHHHHHhcC-CCCch
Q 037592 1 RLKQGKEVHAKVITLG-LCGNV 21 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~-~~~~~ 21 (337)
+++.|...|..+...| ++|+.
T Consensus 35 d~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCGGG
T ss_pred CHHHHHHHHHHHHHcCCCCHHH
Confidence 5778889998887655 66654
No 313
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.81 E-value=82 Score=22.40 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=32.5
Q ss_pred hCCCHhHHHHHHHHHHhcCCCC--CHhHHHHHHH------HHhhcCchhhHHHHHHHHHH
Q 037592 161 QNGRGEEALRIFDDMTEGGTKP--DHVSFIGVLS------ACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 161 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 212 (337)
..|++-+|-++|+........+ ....+..||. ...+.|+...|..++.+.+.
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4478888888888777654444 3344555554 22346777777777777654
No 314
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=44.26 E-value=84 Score=27.25 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHH
Q 037592 268 AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 306 (337)
++.|...|.++..+.|++...|+.|+......|+.-+|.
T Consensus 168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 445555555555555555555555555444444444433
No 315
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.17 E-value=1.4e+02 Score=24.86 Aligned_cols=135 Identities=12% Similarity=0.121 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCCchH--hHHHHHHHHHhcCChHHHHHHHHHcccCChhh--HHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 6 KEVHAKVITLGLCGNVV--VESSLVDMYGKCGLVDESHRVFDKMLKKNSVS--SSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
.++.+.+++.|..++.. .-.+.+...+..|+.+-+.-+++.-..++... -.+.+...+..|+.+-+..+++.-..
T Consensus 60 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~ 139 (437)
T 1n11_A 60 TEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139 (437)
T ss_dssp HHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 34566667766554332 12234555567788877777776643332111 11223334556776666555554322
Q ss_pred --cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchh--HHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 81 --IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII--ESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 81 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
.+...++ .+...+..|+.+ +.+.+++.|..++... -.+.+...+..|+.+-+.-+++.-.
T Consensus 140 ~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 203 (437)
T 1n11_A 140 ACMTKKGFT-PLHVAAKYGKVR----VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203 (437)
T ss_dssp CCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC
T ss_pred cCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 1111122 222333444443 3334444554333211 1123344456667666666655443
No 316
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=43.77 E-value=95 Score=22.96 Aligned_cols=71 Identities=18% Similarity=0.129 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhcCCCchh--HHH-----HHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHH
Q 037592 236 LEEAETLIENADCRHDSS--LWE-----VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 236 ~~~A~~~~~~~~~~~~~~--~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 306 (337)
++.|+.+|+.++..-+.. ... ..+..|.+.|.+++|.+++++..+..|++...-..|...-.+...+..-+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 567888888775333311 112 22345999999999999999988877665555555554444444344333
No 317
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=42.54 E-value=1.5e+02 Score=24.92 Aligned_cols=30 Identities=7% Similarity=0.144 Sum_probs=23.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
....|..+...+.+.+++.+|++.+.+.-.
T Consensus 302 hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 302 HIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 466677888888888888888888877654
No 318
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=42.19 E-value=1.1e+02 Score=23.05 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=15.9
Q ss_pred HHHHhhcCchhhHHHHHHHHH
Q 037592 191 LSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~ 211 (337)
+..|.+.|.+++|.+++++..
T Consensus 121 V~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHhcchHHHHHHHHHHh
Confidence 345778888888888888774
No 319
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=42.06 E-value=35 Score=21.73 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=25.3
Q ss_pred CCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHH
Q 037592 132 GCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 132 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 168 (337)
...++|.++++.+...++.+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567777777777777777777777777665655444
No 320
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.84 E-value=56 Score=24.21 Aligned_cols=22 Identities=14% Similarity=0.082 Sum_probs=12.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC
Q 037592 124 LVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
.+...++.|+.+-+..+++.-.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 3444555666666655555443
No 321
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.10 E-value=56 Score=22.06 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=14.9
Q ss_pred hCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc
Q 037592 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197 (337)
Q Consensus 161 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 197 (337)
..+..-.|.++++.+.+.+...+..|....+..+...
T Consensus 22 ~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 22 TLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3333444444444444443333333333333333333
No 322
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=40.72 E-value=48 Score=22.76 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=19.4
Q ss_pred HHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
..+...+..-.|.++++.+ +..+...+..|...-+..+...|-
T Consensus 21 ~~L~~~~~h~sa~eI~~~l-~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDML-KHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3333434444555555555 222333444444444455555443
No 323
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.09 E-value=1.4e+02 Score=23.84 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcccC
Q 037592 24 ESSLVDMYGKCGLVDESHRVFDKMLKK 50 (337)
Q Consensus 24 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 50 (337)
...++.-|...|+.++|...++++..|
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 356788888889999999999988544
No 324
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=39.02 E-value=70 Score=19.99 Aligned_cols=60 Identities=8% Similarity=0.001 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRG 165 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (337)
...++..+.+.|+ -+..-+..+-. .....++|..+++.+...+..+|..++.++...+..
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 3456666666665 33333332222 246677788888877777777888888777776653
No 325
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=38.34 E-value=53 Score=22.51 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=32.0
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (337)
.++..+...+..-.|.++++.+.+.++..+..|...-++.+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 35555556666777888888888777666666666666777776654
No 326
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=37.84 E-value=60 Score=21.92 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=31.0
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (337)
.++..+...+..-.|.++++.+.+.++..+..|...-++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555566778888888888776666665655566666666643
No 327
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.69 E-value=69 Score=22.12 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=38.3
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 037592 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 173 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
+.+.+.|.+++..-.. ++..+...+ .-.|.++++.+ +..+...+..|...-+..+...|-+.
T Consensus 8 ~~L~~~g~r~T~qR~~-Il~~l~~~~-h~ta~ei~~~l-~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQL-VLEAVDTLE-HATPDDILGEV-RKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCHHHHH-HHHHHHHHS-SBCHHHHHHHH-HTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHHHH-HHHHHHhcC-CCCHHHHHHHH-HhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 3455667776665432 344444555 66788888888 44355566667666677777777543
No 328
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=37.34 E-value=56 Score=18.38 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=16.3
Q ss_pred cCChHHHHHHHHHcc-cCChhhHHHHH--HHHHcCCChhHHH
Q 037592 34 CGLVDESHRVFDKML-KKNSVSSSALL--QGYCQTGDFESVI 72 (337)
Q Consensus 34 ~~~~~~A~~~~~~~~-~~~~~~~~~l~--~~~~~~g~~~~A~ 72 (337)
..+.++|..+-+.+. ..+..-...+| ..+...|++++|+
T Consensus 19 ~HcH~EA~tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 19 HHCHQEAASIADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp TTCHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred chHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 345667766666652 22323233333 4566777777765
No 329
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=37.28 E-value=2.4e+02 Score=25.57 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=10.4
Q ss_pred HHHHHhhchhhhhHHHHH
Q 037592 90 LRACAGLAALRLGKEVHC 107 (337)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~ 107 (337)
..++.-.|+++.|.+++-
T Consensus 301 f~vLlLtgqFE~AI~~L~ 318 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTY 318 (661)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 344455666776666554
No 330
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.11 E-value=1e+02 Score=21.26 Aligned_cols=53 Identities=4% Similarity=0.017 Sum_probs=23.2
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc---CCCchhHHHHHHHHHhcCC
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD---CRHDSSLWEVLLGACTTFR 266 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g 266 (337)
+..|++++..= ..++..+...+ .-.|.++++.+. ...+..|...-+..+.+.|
T Consensus 11 ~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 11 RQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 44455555432 22333344444 445666666542 1223344444444444444
No 331
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.44 E-value=61 Score=21.63 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=10.6
Q ss_pred HHcCCChhHHHHHHHHHhh
Q 037592 62 YCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~ 80 (337)
+...++++.|..+...+..
T Consensus 71 al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4455566666666655544
No 332
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.38 E-value=1.1e+02 Score=21.21 Aligned_cols=63 Identities=8% Similarity=0.134 Sum_probs=39.1
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhhcC-chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 037592 173 DDMTEGGTKPDHVSFIGVLSACSHMG-LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 173 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
+.+.+.|.+++..-.. ++..+...+ ..-.|.++++.+ +..+...+..|...-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l-~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKL-IDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3456677777665433 444555555 567788888888 44354556666666666776666543
No 333
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.38 E-value=1e+02 Score=20.87 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=38.1
Q ss_pred HHHhcCCCCCHhHHHHHHHHHhhcC-chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 037592 174 DMTEGGTKPDHVSFIGVLSACSHMG-LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 174 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
.+.+.|.+++..-.. ++..+...+ ..-.|.++++.+ +..+...+..|...-+..+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l-~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKAL-MEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHH-HhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 355667776655433 444555555 567788888887 44355566666666677777777544
No 334
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.07 E-value=83 Score=21.88 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=32.5
Q ss_pred HHHHHHHHhCC-CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCch
Q 037592 153 NSMISGFAQNG-RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200 (337)
Q Consensus 153 ~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 200 (337)
..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34445555555 6677888888888877666777766667777766654
No 335
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.84 E-value=1.1e+02 Score=21.16 Aligned_cols=55 Identities=16% Similarity=0.068 Sum_probs=25.0
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc---CCCchhHHHHHHHHHhcCCC
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD---CRHDSSLWEVLLGACTTFRN 267 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~ 267 (337)
+..|..++..= ..++..+...+..-.|.++++.+. ...+..|....+..+.+.|-
T Consensus 19 ~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 19 KKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 44455554322 234444445555555666665542 22344444444555555543
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.57 E-value=1.1e+02 Score=20.79 Aligned_cols=54 Identities=11% Similarity=0.005 Sum_probs=24.6
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhc---CCCchhHHHHHHHHHhcCC
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAG-LLEEAETLIENAD---CRHDSSLWEVLLGACTTFR 266 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g 266 (337)
+..|.++++.= ..++..+...+ ..-.|.++++.+. ...+..|...-+..+.+.|
T Consensus 10 ~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 10 RKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44466555432 23344444444 4555666666542 2223444444444444444
No 337
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=34.57 E-value=58 Score=17.74 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=22.4
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDK 46 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 46 (337)
+..|.++++.+.+.|--|+... .+| .--.++.-.....++|+.
T Consensus 9 v~RaiELle~lq~sgevp~~KL-~aL-q~VLqSdF~~aVREVYEh 51 (53)
T 1zl8_A 9 VQRILELMEHVQKTGEVNNAKL-ASL-QQVLQSEFFGAVREVYET 51 (53)
T ss_dssp HHHHHHHHHHHGGGSSSTHHHH-HHH-HHHHSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHH-HHH-HHHHHHHHHHHHHHHHHH
Confidence 4567888888888775444432 112 222233334444555543
No 338
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.40 E-value=1.2e+02 Score=21.51 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=28.4
Q ss_pred HHHHHHhcCChHHHHHHHHHcccCC---hhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 27 LVDMYGKCGLVDESHRVFDKMLKKN---SVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 27 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
.+...+..|+.+-+..+++.-..++ ..-++ .+...+..|+.+-+..+++.
T Consensus 42 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 42 PLNIAVHNNDIEIAKALIDRGADINLQNSISDS-PYLYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhc
Confidence 4555567888887777777643332 21222 23344566777666655544
No 339
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.25 E-value=1.6e+02 Score=22.63 Aligned_cols=188 Identities=11% Similarity=-0.104 Sum_probs=100.4
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChh----HHHHHHHH-Hhh-cCcccHHHHHH
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFE----SVIRIFRE-MEE-IDLFSFGIVLR 91 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~-~~~-~~~~~~~~l~~ 91 (337)
.++..+-...+..+.+.|..+....+.+.+..++...-...+.++...|... ..+.++.. +.. ++...-...+.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~ 113 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIE 113 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3555555566677777776444444444445666666666667777666432 33344442 222 66666666677
Q ss_pred HHHhhch-----hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCC-CH
Q 037592 92 ACAGLAA-----LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG-RG 165 (337)
Q Consensus 92 ~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 165 (337)
++...+. ...+...+..++. .++..+-...+.++...|+.+..-.+..-+..++...-...+.++...+ ..
T Consensus 114 aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~ 190 (280)
T 1oyz_A 114 STAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDN 190 (280)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc
Confidence 7666652 2234444333332 3667777777777777776433333333344566655555555555544 23
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 166 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
..+...+..+.+ .++...-...+.++.+.|... +...+..++.
T Consensus 191 ~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~ 233 (280)
T 1oyz_A 191 SDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKR-VLSVLCDELK 233 (280)
T ss_dssp HHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGG-GHHHHHHHHT
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHh-hHHHHHHHhc
Confidence 455555555543 345555555666777777544 3333333333
No 340
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.72 E-value=1.4e+02 Score=22.05 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=37.1
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCch-----hhHHHHHHHHHHhcCCCCCH
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI-----DRGRKHFASMTKEYRIKPKI 220 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~ 220 (337)
.+-.+.+.|+-++.+|++.| .|....-..++.+.-..|.- ..|...++.. +.-|.+--.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~-~~iG~PE~~ 88 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAA-EKLGLPEAR 88 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHH-HHHCTTTTH
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH-HHhCCCHHH
Confidence 35689999999999999999 76655555555666555542 2344444444 333654433
No 341
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.54 E-value=1.2e+02 Score=20.82 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=24.9
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc---CCCchhHHHHHHHHHhcCCC
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD---CRHDSSLWEVLLGACTTFRN 267 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~ 267 (337)
+..|+.+++.= ..++..+...+..-.|.++++.+. ...+..|....+..+.+.|-
T Consensus 14 ~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 14 KETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 44455555422 233444444444555666665542 12233444444444444443
No 342
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.30 E-value=2e+02 Score=23.27 Aligned_cols=89 Identities=4% Similarity=0.015 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcccCC---hhhHHHHHHHHHcCC-ChhHHHHHHHHHhhcCcccHHHHHHHHHhhc--
Q 037592 24 ESSLVDMYGKCGLVDESHRVFDKMLKKN---SVSSSALLQGYCQTG-DFESVIRIFREMEEIDLFSFGIVLRACAGLA-- 97 (337)
Q Consensus 24 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-- 97 (337)
...++.-|...|+.++|...++++..|. ......+..++-+.. .-+.+..++..+.+....+-..+..++.+..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL 93 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 4567888889999999999999996653 122233333332221 2344555666665555555555555544321
Q ss_pred ------hhhhhHHHHHHHHHh
Q 037592 98 ------ALRLGKEVHCQYIRR 112 (337)
Q Consensus 98 ------~~~~a~~~~~~~~~~ 112 (337)
|...|...+.++...
T Consensus 94 l~Dl~lDiP~a~~~La~~v~~ 114 (339)
T 1ug3_A 94 AEDMEIDIPHVWLYLAELVTP 114 (339)
T ss_dssp HHHHTTTCTTHHHHHHHHHGG
T ss_pred ChHhhcCccchHHHHHHHHHH
Confidence 344555555555443
No 343
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.89 E-value=1.2e+02 Score=21.51 Aligned_cols=19 Identities=11% Similarity=-0.067 Sum_probs=12.4
Q ss_pred HHHhcCCHHHHHHHHhcCC
Q 037592 127 LYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~ 145 (337)
..+..|+.+....++..-.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTT
T ss_pred HHHHhccHHHHHHHHHcCC
Confidence 3456677777777776544
No 344
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.64 E-value=1.4e+02 Score=21.22 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcccC------ChhhHHHHHH-H-----HHcCCChhHHHHHHHHHhh
Q 037592 24 ESSLVDMYGKCGLVDESHRVFDKMLKK------NSVSSSALLQ-G-----YCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 24 ~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 80 (337)
|..-+.. ...|++-+|.++|+..-.. ....|..||. . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~l-Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRL-YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333344 3559999999999998332 2344666666 2 3456888888888887765
No 345
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.15 E-value=2.5e+02 Score=23.33 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcC
Q 037592 124 LVDLYAKCGCVDFAHQIFLQM 144 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~ 144 (337)
+...|...|+.+.|..++++.
T Consensus 133 i~~~yl~~~d~~~a~~~l~~~ 153 (393)
T 4b4t_O 133 IARTYLLKNDLVKARDLLDDL 153 (393)
T ss_dssp HHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 344455555555555544443
No 346
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.79 E-value=2.2e+02 Score=22.71 Aligned_cols=69 Identities=13% Similarity=0.260 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcccCC---hhhHHHHHHHHHcCCC--hhHHHHHHHHHhhcCcccHHHHHHHH
Q 037592 25 SSLVDMYGKCGLVDESHRVFDKMLKKN---SVSSSALLQGYCQTGD--FESVIRIFREMEEIDLFSFGIVLRAC 93 (337)
Q Consensus 25 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~l~~~~ 93 (337)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+....++..+.+....+-..+..++
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 456677777788888888888875552 2233344444444322 34455666666554444444444443
No 347
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.79 E-value=87 Score=20.89 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 171 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
+|+.+.+..+.|+...-..-+..+...++++.|.+++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444545544433333334445567788888888777743
No 348
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.96 E-value=1.9e+02 Score=23.26 Aligned_cols=17 Identities=6% Similarity=-0.050 Sum_probs=10.6
Q ss_pred HHHhcCChHHHHHHHHH
Q 037592 229 LLGRAGLLEEAETLIEN 245 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~ 245 (337)
..+..|+.+-+..+++.
T Consensus 179 ~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 34466777766666664
No 349
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=27.53 E-value=2.2e+02 Score=22.97 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 171 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
+++.+.+.|+.|...++..++..+.+.=.++.+.++|+.+...
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 4455566678887777777777777666778888888887654
No 350
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.38 E-value=1.9e+02 Score=21.56 Aligned_cols=46 Identities=28% Similarity=0.528 Sum_probs=32.9
Q ss_pred HHHHHHH---hCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 154 SMISGFA---QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 154 ~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
-+|+++. +-.+.+.|+-++.+|++.|-.|....-..++.+.-..|.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3455554 568999999999999999887766665556656555554
No 351
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.13 E-value=3e+02 Score=23.66 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc---ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cC
Q 037592 9 HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM---LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE---ID 82 (337)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 82 (337)
+....+.|++.-...|..-.+.+...|++++|.++--.. .-++..+.+.+-..-...|+..--+.+|..+.+ .+
T Consensus 349 ~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln 428 (494)
T 1bpo_A 349 LRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLN 428 (494)
T ss_dssp HHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCccc
Q ss_pred cccHHHHHHHHHhhchhhhhHHHHHH
Q 037592 83 LFSFGIVLRACAGLAALRLGKEVHCQ 108 (337)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 108 (337)
..--..+++.-...|+.+..+..+.+
T Consensus 429 ~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 429 KYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHhhHHhHHHHhccHHHHHHHHHhc
No 352
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.81 E-value=1.6e+02 Score=26.68 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=37.0
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 259 LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 259 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
.......|++.-|.++.+.+...+|++..+-..+..+|.+.|.
T Consensus 456 a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 456 ARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3446688999999999999999999998888888888887764
No 353
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.44 E-value=2.5e+02 Score=22.49 Aligned_cols=216 Identities=10% Similarity=0.049 Sum_probs=102.1
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcccCC---hhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhh
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKN---SVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGL 96 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (337)
|..-++ .+...+..|+.+.+..+++.-..++ ..-++ .+...+..|+.+-+.-+++.-..++...-.+.+...+..
T Consensus 17 d~~g~t-~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 17 DDENME-KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp CHHHHH-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCCCCC-HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHc
Confidence 444444 4455567888888888887643332 21122 334445567776555555543333322222234444566
Q ss_pred chhhhhHHHHHHHHHhhCCCCc--------------------hhHHHHHHHHHhcC--CHHHHHHHHhcCCCC---cHHh
Q 037592 97 AALRLGKEVHCQYIRRSGCKDV--------------------IIESALVDLYAKCG--CVDFAHQIFLQMPVR---NLIT 151 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~---~~~~ 151 (337)
|+.+-+..+++.....|..++. .-. +.+...+..| ..+-+..+++.-..+ |...
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g 173 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD 173 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCC-CHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTS
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCC-CHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCC
Confidence 7776666666654444443222 112 2344556667 677676666654322 3233
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHh-cCCCCC---HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHH--HHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTE-GGTKPD---HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH--YNC 225 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ 225 (337)
.+.|..+ +..|+.+-+..+++.-.. .+..++ ..-.+.|. ..+..|..+-+. .+++ .|..++... -.+
T Consensus 174 ~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~----~Ll~-~gad~~~~d~~g~t 246 (364)
T 3ljn_A 174 ETPLMRA-MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVAM----RFVE-MGIDVNMEDNEHTV 246 (364)
T ss_dssp CCHHHHH-HHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHHH----HHHT-TTCCTTCCCTTSCC
T ss_pred CCHHHHH-HHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHHH----HHHH-cCCCCCCCCCCCCC
Confidence 3334333 455666555444443211 000011 11122222 334556654333 3322 255443211 011
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 037592 226 MVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~ 245 (337)
-+..-+..|+.+-+.-+++.
T Consensus 247 pL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 247 PLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHc
Confidence 23334556777777777764
No 354
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.85 E-value=1.2e+02 Score=19.23 Aligned_cols=20 Identities=10% Similarity=-0.125 Sum_probs=10.6
Q ss_pred HHHHHhcCCChhHHHHHHHH
Q 037592 258 LLGACTTFRNAHVAERVAKK 277 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~ 277 (337)
....+.+.|++++|++..++
T Consensus 21 rAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 34445555566555555443
No 355
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=25.73 E-value=1.9e+02 Score=20.97 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=51.3
Q ss_pred HHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC--C--------------CH-hHHHHH
Q 037592 128 YAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK--P--------------DH-VSFIGV 190 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--------------~~-~~~~~l 190 (337)
+.-.|.+..++-++...-.-+..-|.. -+|-+.+++.+|+..++.+.+..+. | |. ..++.+
T Consensus 43 LyyngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~ 120 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLL 120 (242)
T ss_dssp HHHTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHH
Confidence 344678888877776554333333333 3566778888888888888755443 1 12 234555
Q ss_pred HHHHhhcCchhhHHHHHHHHH
Q 037592 191 LSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~ 211 (337)
...|...|+.++|+..+..--
T Consensus 121 a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 121 GDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHhhhHhhhhc
Confidence 566777888888888776543
No 356
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.90 E-value=1.1e+02 Score=17.84 Aligned_cols=46 Identities=13% Similarity=-0.065 Sum_probs=33.2
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (337)
.++.++..++...-.+.++-.+.++++.|. .+..+|-.-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 355677777777778888888888888876 6677776666655543
No 357
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.88 E-value=1.1e+02 Score=17.03 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC--HHHHHHHHhcCCCCc
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGC--VDFAHQIFLQMPVRN 148 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~ 148 (337)
-.+.++.+++.|+.+. ....+..+.|. ++.|.+++.+|.-|+
T Consensus 9 n~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 9 NRQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp CHHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 3455777888888543 22334555666 888888888876554
No 358
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.26 E-value=3.8e+02 Score=23.20 Aligned_cols=63 Identities=5% Similarity=-0.164 Sum_probs=43.7
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFA 160 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 160 (337)
..++.|...|.++....+ .+...||.|.-.....|+.-+|.-.|-+.. .|-..+...|...+.
T Consensus 166 ~~~~~A~~~Y~~A~~~~P-~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp TCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 345678888888888765 667788888877777887777776655433 455666666666554
No 359
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.69 E-value=2.5e+02 Score=20.77 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=31.6
Q ss_pred HHHHH---HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 155 MISGF---AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 155 l~~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
+|+++ .+-.+.+.|+-.+.+|++.|-.|....-..++.+.-..|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 44444 3568999999999999999887766655555555555544
No 360
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.44 E-value=1.4e+02 Score=17.78 Aligned_cols=60 Identities=8% Similarity=0.121 Sum_probs=34.2
Q ss_pred HHHhcCCCCCHhHHHHHHHHHhhcC-chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 174 DMTEGGTKPDHVSFIGVLSACSHMG-LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 174 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
.+.+.|+..+..-. .++..+...+ ..-.+.++++.+ .+.+...+..|....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l-~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRL-IDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHH-HHhCCCCCHhhHHHHHHHHHHCCC
Confidence 35566766665443 3445555443 455677777777 333444566666666666666554
No 361
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.28 E-value=2.4e+02 Score=20.49 Aligned_cols=193 Identities=11% Similarity=-0.000 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCCCCchH--hHHHHHHHHHhcCChHHHHHHHHHcccCCh---hhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 6 KEVHAKVITLGLCGNVV--VESSLVDMYGKCGLVDESHRVFDKMLKKNS---VSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
.++++.+++.|..++.. .-.+.+...+..|+.+-+..+++.-...+. ..-.+.+...+..|+.+-+..+++.-..
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~ 101 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC
Confidence 45677788887665432 223456777888999888888876533321 1112334444556776655444443222
Q ss_pred ---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCHHHHHHHHhcCC-CC---cH-
Q 037592 81 ---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV---IIESALVDLYAKCGCVDFAHQIFLQMP-VR---NL- 149 (337)
Q Consensus 81 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---~~- 149 (337)
.+....+.+ ...+..|+.+ +.+.+++.|..++. .-.+.+..+.. .+......+++.+.. .+ +.
T Consensus 102 ~~~~~~~g~t~l-~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~-~~~~~~~~~~L~~~~~~~~~~~~~ 175 (240)
T 3eu9_A 102 PSLIDGEGCSCI-HLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAY-RTHSVDPTRLLLTFNVSVNLGDKY 175 (240)
T ss_dssp TTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH-HCCSSTTHHHHHHTTCCTTCCCTT
T ss_pred CcccCCCCCCHH-HHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHH-hCChHHHHHHHHhcCCCcchhhcc
Confidence 222222333 3334445544 44555566654432 22233443333 344334444443332 22 21
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHH--HHHHHHHhhcCchhhHHHHHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF--IGVLSACSHMGLIDRGRKHFAS 209 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~ 209 (337)
...+. +...+..|+.+-+ +.+.+.|..++.... .+.+....+.|+.+-+..+++.
T Consensus 176 ~g~t~-L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 176 HKNTA-LHWAVLAGNTTVI----SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp TCCCH-HHHHHHHTCHHHH----HHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCcH-HHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 11222 2333455665543 334444555543211 1223344566776665555544
No 362
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.28 E-value=3.3e+02 Score=22.00 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMPVR 147 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (337)
..++.=|...|+.++|...++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34566666667777777777777655
No 363
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=21.00 E-value=2e+02 Score=25.33 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC---cHHhHHHHHHHHHhCCCHhHH
Q 037592 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR---NLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 168 (337)
..+...++++.+-+..+..-...++..|.+.|-.+.|.++++.+-.. +...+ .-+..|.++|+++.+
T Consensus 499 ~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 499 AKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhc
Confidence 34445555554433344444555666666666666666666655422 22233 334455566665543
No 364
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.72 E-value=2.2e+02 Score=19.94 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=28.3
Q ss_pred CChhHHHHHHHHHhh-----cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhC
Q 037592 66 GDFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114 (337)
Q Consensus 66 g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 114 (337)
..+++|.+++..|++ -.+..||..+..+-..-.-.....+|..+++.++
T Consensus 72 ~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l~~FW~~Iv~~~l 125 (152)
T 1rw2_A 72 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGI 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCCHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCc
Confidence 356778888887776 4556677777665432222222555555555544
No 365
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.65 E-value=3.6e+02 Score=22.30 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 037592 224 NCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
..++..|...|+.++|..++++
T Consensus 131 ~~i~~~yl~~~d~~~a~~~l~~ 152 (393)
T 4b4t_O 131 SEIARTYLLKNDLVKARDLLDD 152 (393)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHH
Confidence 3344445555555555555544
No 366
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.44 E-value=1.8e+02 Score=19.34 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHHhh-----cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhC
Q 037592 67 DFESVIRIFREMEE-----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG 114 (337)
Q Consensus 67 ~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 114 (337)
++++|.+++..|++ -.+..||..+..+-..-.-.....+|..+++.++
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l~~FW~~iv~~~l 94 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGI 94 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCc
Confidence 56777777777776 3455666666655332111222445555555443
No 367
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.22 E-value=2.3e+02 Score=20.46 Aligned_cols=53 Identities=11% Similarity=-0.095 Sum_probs=41.0
Q ss_pred cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 037592 81 IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134 (337)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (337)
|....++.++..++.-.-.+.++-.+.+++..|. .+..+|-.-++.+++..-+
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 4455688888998888889999999999999886 7777777777766654433
No 368
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=20.22 E-value=40 Score=19.06 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=12.5
Q ss_pred CchhhHHHHHHHHhcCCCCch
Q 037592 1 RLKQGKEVHAKVITLGLCGNV 21 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~ 21 (337)
+++.|...|... +..++|+.
T Consensus 34 d~~~A~~~F~~~-~~~IP~eA 53 (57)
T 2jp7_A 34 NYEVAIKGFQSS-MNGIPREA 53 (57)
T ss_dssp CSHHHHHHHHHS-TTTSCHHH
T ss_pred CHHHHHHHHHHH-HcCCCHHH
Confidence 467777777775 44455544
No 369
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.02 E-value=1.8e+02 Score=18.59 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHhh
Q 037592 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSH 196 (337)
Q Consensus 168 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 196 (337)
|.++.++....|+.|+.....-++..|..
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~ 56 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQ 56 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34445555555566655555555544443
Done!