BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037594
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 241 bits (614), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 175/290 (60%), Gaps = 14/290 (4%)
Query: 13 FFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGG 71
F + Y KAK +N+AL+ AV + P +HE+MRYSL GGKR+ LCIA+CE++GG
Sbjct: 1 MFDFDGYMLRKAKSVNKALEAAVQMKEPLKIHESMRYSLLAGGKRVRPMLCIAACELVGG 60
Query: 72 SQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLA 131
+S AM ACA+E++ TM+++ DDLPC+DNDDLRRGKP+NH FGE+ A+LA AL A
Sbjct: 61 DESTAMPAACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALLSFA 120
Query: 132 MQHXXXXXXXX-----------XXSAVGSEGIAAGQIMDINSEG-KEVSLSELNFIHRHK 179
+H ++GSEG+ AGQ++D+ SEG EV L L FIH HK
Sbjct: 121 FEHVAAATKGAPPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIHHHK 180
Query: 180 TGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVI-GSPEMREKTGRD 238
T ++R F +G+ +Q+ +DI+DV S E+ + G+D
Sbjct: 181 TAALLQGSVVLGAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKD 240
Query: 239 MMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFI 288
++ DK TYPKL+G++ SK+ A L EA+++L +F P RAAPL L N+I
Sbjct: 241 LVADKTTYPKLIGVEKSKEFADRLNREAQEQLLHFHPHRAAPLIALANYI 290
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 163/291 (56%), Gaps = 29/291 (9%)
Query: 19 YKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAM 77
Y KA +N+ALD AVPL P +HEA RYSL GGKR+ LCIA+CE++GG +S+A
Sbjct: 16 YIIRKADSVNKALDSAVPLREPLKIHEAXRYSLLAGGKRVRPVLCIAACELVGGEESLAX 75
Query: 78 SMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHXXX 137
ACA+E + T ++I DDLPC DNDDLRRGKP+NHKV+GE A+LA AL A +H
Sbjct: 76 PAACAVEXIHTXSLIHDDLPCXDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLAS 135
Query: 138 XXXXXXX------------SAVGSEGIAAGQIMDINSEGKE---VSLSELNFIHRHKTGK 182
A+G+EG+ AGQ++DI+SEG + V L L FIH HKT
Sbjct: 136 ATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAA 195
Query: 183 FXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRD 242
R+R F + +G+ +Q+ +DI+DV S
Sbjct: 196 LLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKS-------------S 242
Query: 243 KATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293
K TYPKL G++ S++ A++L EA+ +L FD + APL L N+I + N
Sbjct: 243 KLTYPKLXGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 293
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 149/288 (51%), Gaps = 48/288 (16%)
Query: 19 YKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAM 77
Y KA +N+ALD AVPL P +HEAMRYSL GGKR+ LCIA+CE++GG +S+AM
Sbjct: 16 YIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAM 75
Query: 78 SMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHXXX 137
ACA+E++ TM++I DD V+GE A+LA AL A +H
Sbjct: 76 PAACAVEMIHTMSLIHDD------------------VYGEDVAVLAGDALLSFAFEHLAS 117
Query: 138 XXXXXX------------XSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXX 185
A+G+EG+ AGQ++DI++ V L L FIH HKT
Sbjct: 118 ATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISN----VGLEHLKFIHLHKTAALLE 173
Query: 186 XXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKAT 245
R+R F + +G+ +Q+ +DI+DV + DK T
Sbjct: 174 ASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDV-------------TIADKLT 220
Query: 246 YPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293
YPKL+G++ S++ A++L EA+ +L FD + APL L N+I + N
Sbjct: 221 YPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 268
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 151/288 (52%), Gaps = 15/288 (5%)
Query: 16 VNEYKALKAKQINEALDEAVPLPHPA-ILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQ 73
+ ++ ++++ L++ + PA LH AMRYSL GGKR+ L AS +++G
Sbjct: 5 LKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDIS 64
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQ 133
S+ + A A+E + ++I DDLP +DND+LRRGKP+ H F EATAILA AL A +
Sbjct: 65 SLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFE 124
Query: 134 HXXXXXXXXXXSAV----------GSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKF 183
A+ G G+ GQ++D++SE K +SL+EL +H HKTG
Sbjct: 125 LLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGAL 184
Query: 184 XXXXXXXXXXXXXXXX-XXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTG-RDMMR 241
++ + +G+A+Q+ +DI+D+ E KT D
Sbjct: 185 IKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEA 244
Query: 242 DKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIV 289
+KATYPKL+G+DG+K L +A +++ F ++ PL L N+I+
Sbjct: 245 NKATYPKLLGLDGAKALVVRLHEQAIAQISEFG-DKSQPLTDLANYII 291
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 132/240 (55%), Gaps = 13/240 (5%)
Query: 39 HPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLP 97
+ +L+++M YS+ GGKR+ L + S + ++ A AIE++ T ++I DDLP
Sbjct: 58 YNKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLP 117
Query: 98 CLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHXXXXXXXXXXSAV---------- 147
C+DNDDLRRGKP+NHKVFGEA A+LA AL AM+ SA+
Sbjct: 118 CMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAA 177
Query: 148 GSEGIAAGQIMD-INSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMR 206
GS+G+ GQI+D IN + +E+SL EL+++H KTG+ ++
Sbjct: 178 GSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLE 237
Query: 207 NFGKYVGMAYQLWNDIVDVIG-SPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAE 265
FG +G+A+Q+ +DI+DV+G + ++ + +D +K Y + G++ KK + E
Sbjct: 238 GFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEE 297
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 12/226 (5%)
Query: 43 LHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDN 101
L E+M YSL GGKR+ L + + + + + M A A+E++ T ++I DDLP +DN
Sbjct: 30 LEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMDN 89
Query: 102 DDLRRGKPSNHKVFGEATAILACQALHCLAMQ----------HXXXXXXXXXXSAVGSEG 151
DD RRGK +NHKV+GE TAILA AL A + A G G
Sbjct: 90 DDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVG 149
Query: 152 IAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKY 211
+ GQ++D+ SEG+ + L L IH+ KTG + ++ +
Sbjct: 150 MVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYH 209
Query: 212 VGMAYQLWNDIVDVIGS-PEMREKTGRDMMRDKATYPKLVGIDGSK 256
+GM +Q+ +D++D G ++ +K G D+ +K+TY L+G DG++
Sbjct: 210 LGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAE 255
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 133/259 (51%), Gaps = 17/259 (6%)
Query: 16 VNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGSQS 74
++ Y+ +Q+++ L+ +P ++ EAMRY L GGKR L + +M+G S
Sbjct: 13 LSSYQQRNNQQLDQWLNR-IPFQTLPLI-EAMRYGLLLGGKRARPYLVYITGQMLGCELS 70
Query: 75 VAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM-- 132
+ A A+E + ++I DDLP +D+D+LRRGKP+ H F EATAIL AL LA
Sbjct: 71 DLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTI 130
Query: 133 ----------QHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGK 182
+ A G++G+ GQ +D+ +E + +SL EL IHR+KTG
Sbjct: 131 LAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGA 190
Query: 183 FXX-XXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMM 240
+ + + VG+A+Q+ +DI+D+I E K G D
Sbjct: 191 LMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQE 250
Query: 241 RDKATYPKLVGIDGSKKHA 259
+K+TYP L+G++G+++ A
Sbjct: 251 LNKSTYPALLGLEGAQQKA 269
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 155/303 (51%), Gaps = 28/303 (9%)
Query: 13 FFQVNEY---KALKA--KQINEALDEAV-PLPH---PAILHEAMRY-SLPGGKRLMSTLC 62
+FQ N + L+A KQ N+AL + PLP P + E M+Y +L GGKRL L
Sbjct: 19 YFQSNAMDFPQQLEACVKQANQALSRFIAPLPFQNTPVV--ETMQYGALLGGKRLRPFLV 76
Query: 63 IASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAIL 122
A+ M G S + + A A+E + ++I DDLP +D+DDLRRG P+ H FGEA AIL
Sbjct: 77 YATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAIL 136
Query: 123 ACQALHCLAMQ------------HXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLS 170
A AL LA SA G G+ GQ +D+++EGK V L
Sbjct: 137 AGDALQTLAFSILSDANMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLD 196
Query: 171 ELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXR-MRNFGKYVGMAYQLWNDIVDVIG-S 228
L IHRHKTG + + + +G+A+Q+ +DI+DV+G +
Sbjct: 197 ALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDT 256
Query: 229 PEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF--DPTRAAPLDHLVN 286
+ ++ G D K+TYP L+G++ ++K A++LI +A+Q L + L+ L +
Sbjct: 257 ATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQALKQLAEQSLDTSALEALAD 316
Query: 287 FIV 289
+I+
Sbjct: 317 YII 319
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 13/230 (5%)
Query: 41 AILHEAMRYS-LPGGKRLMSTLCIASCEMIGGS--QSVAMSMACAIELLVTMAVIQDDLP 97
A L AM YS L GGKRL L +A+ + +G + A+ELL T ++I DDLP
Sbjct: 34 AQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTYSLIHDDLP 93
Query: 98 CLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHXXXX---------XXXXXXSAVG 148
+DND LRRG+P+NH FG A LA L LA Q +A G
Sbjct: 94 AMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAG 153
Query: 149 SEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNF 208
G+ AGQ DI SE + LS+L +H+ KTG F
Sbjct: 154 PSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQF 213
Query: 209 GKYVGMAYQLWNDIVDVIGSP-EMREKTGRDMMRDKATYPKLVGIDGSKK 257
G+A+Q+++DI+DV+ SP EM + T +D K TYP +G+ G+ +
Sbjct: 214 ADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQ 263
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 147/286 (51%), Gaps = 23/286 (8%)
Query: 25 KQINEALDEAV-PLPH---PAILHEAMRY-SLPGGKRLMSTLCIASCEMIGGSQSVAMSM 79
KQ N+AL + PLP P + E M+Y +L GGKRL L A+ M G S + +
Sbjct: 13 KQANQALSRFIAPLPFQNTPVV--ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAP 70
Query: 80 ACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQ------ 133
A A+E + ++I DDLP +D+DDLRRG P+ H FGEA AILA AL LA
Sbjct: 71 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAD 130
Query: 134 ------HXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXX 187
SA G G+ GQ +D+++EGK V L L IHRHKTG
Sbjct: 131 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAA 190
Query: 188 XXXXXXXXXXXXXXXXR-MRNFGKYVGMAYQLWNDIVDVIG-SPEMREKTGRDMMRDKAT 245
+ + + +G+A+Q+ +DI+DV+G + + ++ G D K+T
Sbjct: 191 VRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKST 250
Query: 246 YPKLVGIDGSKKHAKELIAEAKQELAYF--DPTRAAPLDHLVNFIV 289
YP L+G++ ++K A++LI +A+Q L + L+ L ++I+
Sbjct: 251 YPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYII 296
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 147/286 (51%), Gaps = 23/286 (8%)
Query: 25 KQINEALDEAV-PLPH---PAILHEAMRY-SLPGGKRLMSTLCIASCEMIGGSQSVAMSM 79
KQ N+AL + PLP P + E M+Y +L GGKRL L A+ M G S + +
Sbjct: 12 KQANQALSRFIAPLPFQNTPVV--ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAP 69
Query: 80 ACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQ------ 133
A A+E + ++I DDLP +D+DDLRRG P+ H FGEA AILA AL LA
Sbjct: 70 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAD 129
Query: 134 ------HXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXX 187
SA G G+ GQ +D+++EGK V L L IHRHKTG
Sbjct: 130 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAA 189
Query: 188 XXXXXXXXXXXXXXXXR-MRNFGKYVGMAYQLWNDIVDVIG-SPEMREKTGRDMMRDKAT 245
+ + + +G+A+Q+ +DI+DV+G + + ++ G D K+T
Sbjct: 190 VRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKST 249
Query: 246 YPKLVGIDGSKKHAKELIAEAKQELAYF--DPTRAAPLDHLVNFIV 289
YP L+G++ ++K A++LI +A+Q L + L+ L ++I+
Sbjct: 250 YPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYII 295
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 136/270 (50%), Gaps = 16/270 (5%)
Query: 35 VPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQ 93
P P A L+EA RYS+ GGKR+ L A+CE +GG A ACA+EL+ +++
Sbjct: 31 APSPELARLYEAXRYSVXNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVH 90
Query: 94 DDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHXXXXXXXXXXSAVGSEGIA 153
DDLP D+DDLRRG+P+ HK F EA AILA L LA + + +
Sbjct: 91 DDLPAXDDDDLRRGQPTTHKAFDEAXAILAGDGLQSLAFSALLDPALSDASAEIRLRXVT 150
Query: 154 A------------GQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXX 201
GQ +D+ S G ++ L + HRHKTG
Sbjct: 151 TLAQAAGPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILGALASGRAEKG 210
Query: 202 XXR-MRNFGKYVGMAYQLWNDIVDVIG-SPEMREKTGRDMMRDKATYPKLVGIDGSKKHA 259
+ ++ + + +G+A+Q+ +DI+DV + + ++ G D+ RDK TYP L+G+ +K++A
Sbjct: 211 ELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYA 270
Query: 260 KELIAEAKQELAYFDPTRAAPLDHLVNFIV 289
EL +A L FD A PL L +IV
Sbjct: 271 LELRDQALHALRPFDAA-AEPLRELARYIV 299
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 130/253 (51%), Gaps = 18/253 (7%)
Query: 25 KQINEALDEAVP-----LPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSM 79
K+I +A++ A+ LP L +AM Y+ GGKRL + L I S + G S + AM
Sbjct: 9 KEIQDAVETAMAAAIGRLP-AGDLRDAMAYAAQGGKRLRAFLAIESAAIHGISMAQAMPA 67
Query: 80 ACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQ------ 133
A A+E L +++ DD+PC+DNDDLRRG P+ HK + +ATA+LA AL LA +
Sbjct: 68 ALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPV 127
Query: 134 ----HXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXXX 189
A G+EG+ GQ +DI +E V L+ L+ I R + GK
Sbjct: 128 LGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLT-LDEIIRLQAGKTGALISF 186
Query: 190 XXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMR-EKTGRDMMRDKATYPK 248
+ + +G+A+Q+ +DI+DV G+ E ++ G+D KAT+
Sbjct: 187 AAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVS 246
Query: 249 LVGIDGSKKHAKE 261
L+G+ G+K A +
Sbjct: 247 LLGLAGAKSRAAD 259
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 136/270 (50%), Gaps = 16/270 (5%)
Query: 35 VPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQ 93
P P A L+EA RYS+ GGKR+ L A+CE +GG A ACA+EL+ +++
Sbjct: 24 APSPELARLYEAXRYSVXNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVH 83
Query: 94 DDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHXXXXXXXXXXSAVGSEGIA 153
DDLP D+DDLRRG+P+ HK F EA AILA L LA + + +
Sbjct: 84 DDLPAXDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRXVT 143
Query: 154 A------------GQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXX 201
GQ +D+ S G ++ L + HRHKTG
Sbjct: 144 TLAQAAGPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILGALASGRAEKG 203
Query: 202 XXR-MRNFGKYVGMAYQLWNDIVDVIG-SPEMREKTGRDMMRDKATYPKLVGIDGSKKHA 259
+ ++ + + +G+A+Q+ +DI+DV + + ++ G D+ RDK TYP L+G+ +K++A
Sbjct: 204 ELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYA 263
Query: 260 KELIAEAKQELAYFDPTRAAPLDHLVNFIV 289
EL +A L FD A PL L +IV
Sbjct: 264 LELRDQALHALRPFDAA-AEPLRELARYIV 292
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 152/306 (49%), Gaps = 26/306 (8%)
Query: 1 IINSQRNDTLPKFFQVNEYKALKAKQINEALDEAVPLPH--PAILHEAMRYS-LPGGKRL 57
++N +R +L F + ++ +++ ALD +P P LH+AMRYS L GGKR+
Sbjct: 2 VMNPER--SLSDFMRSSQ------ERVERALDARLPAADRMPERLHQAMRYSVLGGGKRM 53
Query: 58 MSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGE 117
L A+ + IG + + ACA+E + ++I DDLP +D+DDLRRGKP+ HK + E
Sbjct: 54 RPLLTYATGQTIGVAADLLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDE 113
Query: 118 ATAILACQALHCLAMQ------------HXXXXXXXXXXSAVGSEGIAAGQIMDINSEGK 165
ATAILA L LA A G G+ GQ +D+ S GK
Sbjct: 114 ATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGK 173
Query: 166 EVSLSELNFIHRHKTGKFXXXXXXXX-XXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVD 224
++ L L +H KTG R+ ++ K +G+A+Q+ +DI+D
Sbjct: 174 KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILD 233
Query: 225 VIGSPEMREKT-GRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDH 283
+ KT G+D +K YP L+G+ G+K+ A+E+ A + LA F P A L
Sbjct: 234 EESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP-EADLLRE 292
Query: 284 LVNFIV 289
L FI+
Sbjct: 293 LARFII 298
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 120/235 (51%), Gaps = 12/235 (5%)
Query: 43 LHEAMRYSL-PGGKRLMSTLCIASCEMIGGS-QSVAMSMACAIELLVTMAVIQDDLPCLD 100
L EAM YS+ GGKRL L + + ++ +A ++E++ T ++I DDLP +D
Sbjct: 38 LKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLPAMD 97
Query: 101 NDDLRRGKPSNHKVFGEATAILACQALHCLAM---------QHXXXXXXXXXXSAVGSEG 151
+DDLRRGKP+NHKVFGEATAILA L A A G++G
Sbjct: 98 DDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQG 157
Query: 152 IAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKY 211
+ +GQ+ DI E ++L EL +H KTG + F +
Sbjct: 158 MVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHH 217
Query: 212 VGMAYQLWNDIVDVIGS-PEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAE 265
G+A+Q+ +D++D + ++ +K GRD +K+TYP L+GI G+K +AE
Sbjct: 218 YGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAE 272
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 127/266 (47%), Gaps = 24/266 (9%)
Query: 16 VNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQS 74
+++Y + + L+E + +P P I A+ Y+L GGKR+ L + ++I Q
Sbjct: 13 IDKYTQRHELYLEQLLNEII-IPAPQI-RSALHYALFSGGKRIRPILVYLAGDLIDVDQG 70
Query: 75 VAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQ- 133
V +A A+EL ++I DDLP +DNDDLRRGKPS HK F EATAIL + LA++
Sbjct: 71 VLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEV 130
Query: 134 -----------HXXXXXXXXXXSAVGSEGIAAGQIMDINSEGK-EVSLSELNFIHRHKTG 181
+A G G+ +GQ +D++ K V+ +L IH KTG
Sbjct: 131 LLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTG 190
Query: 182 KFXXX-XXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGR--D 238
K +R +GK++G+ +Q+ +D +D+ ++ K GR D
Sbjct: 191 KLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGK-GRSSD 249
Query: 239 MMRDKATYPKLVGIDGSKKHAKELIA 264
K T+ L +K+ +E IA
Sbjct: 250 QANQKTTFATLF----NKQQLEEEIA 271
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 116/259 (44%), Gaps = 19/259 (7%)
Query: 39 HPAILHEAMRYSLPGGKRLMSTLCIAS-CEMIG-----GSQSVAMSMACAIELLVTMAVI 92
HP + L GGKR L +A C ++G Q+ +A +IE L T ++I
Sbjct: 33 HPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLI 92
Query: 93 QDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQ---------HXXXXXXXXX 143
DDLPC+DN LRR P+ H + E TA+L AL+ + + H
Sbjct: 93 HDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKIL 152
Query: 144 XSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXX 203
+ G +G+ GQ +D E ++L +L F+H HKT K
Sbjct: 153 SANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELF 212
Query: 204 R-MRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKEL 262
+ ++ FG +G+ +Q+ +DI+DV E KT + K ++ L+G++ + +A+ L
Sbjct: 213 KWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTH-LDSAKNSFVNLLGLERANNYAQTL 271
Query: 263 IAEAKQELAYFDPTRAAPL 281
E +L P A PL
Sbjct: 272 KTEVLNDLDALKP--AYPL 288
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 116/259 (44%), Gaps = 19/259 (7%)
Query: 39 HPAILHEAMRYSLPGGKRLMSTLCIAS-CEMIG-----GSQSVAMSMACAIELLVTMAVI 92
HP + L GGKR L +A C ++G Q+ +A +IE L T ++I
Sbjct: 40 HPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLI 99
Query: 93 QDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQ---------HXXXXXXXXX 143
DDLPC+DN LRR P+ H + E TA+L AL+ + + H
Sbjct: 100 HDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKIL 159
Query: 144 XSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXX 203
+ G +G+ GQ +D E ++L +L F+H HKT K
Sbjct: 160 SANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELF 219
Query: 204 R-MRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKEL 262
+ ++ FG +G+ +Q+ +DI+DV E KT + K ++ L+G++ + +A+ L
Sbjct: 220 KWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTH-LDSAKNSFVNLLGLERANNYAQTL 278
Query: 263 IAEAKQELAYFDPTRAAPL 281
E +L P A PL
Sbjct: 279 KTEVLNDLDALKP--AYPL 295
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 12/233 (5%)
Query: 23 KAKQINEALDEAVPLPHPAILHEAMR-YSLPGGKRLMSTLCIASCEMIGGSQSVAMSMAC 81
KAK I+E + E +P P +L+EA R Y L GGKR+ + + S E +GG A+ A
Sbjct: 14 KAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAV 73
Query: 82 AIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHXXXXXXX 141
AIEL+ +++ DD+ +D D+ RRGKP+ H+++G AILA L A +
Sbjct: 74 AIELIHNYSLVHDDI--MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIP 131
Query: 142 XXXSA-------VGSEGIAAGQIMDINSEGKE-VSLSELNFIHRHKTGKFXXXXXXXXXX 193
A S + GQ D+ E K V++ E + KTG
Sbjct: 132 PEKKARVLEVIVKASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGI 191
Query: 194 XXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIG-SPEMREKTGRDMMRDKAT 245
+ ++G+ VG+A+Q+W+D++D+I ++ + G D+ + K T
Sbjct: 192 IGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKT 244
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 124/264 (46%), Gaps = 25/264 (9%)
Query: 39 HPAILHEAMRYSLP-GGKRLMSTLCIASC-----EMIGGSQSVAMSMACAIELLVTMAVI 92
HP +EA+ L GGK + L ++ E++ A+ +A A+E + T ++I
Sbjct: 24 HP-FFNEALALXLKAGGKHFRAQLLLSVVQSNKPELLNQ----ALDVALALEFIHTYSLI 78
Query: 93 QDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHC---LAMQHX------XXXXXXXX 143
DDLP DN D RRG P+ HK + E TAIL AL+ L + H
Sbjct: 79 HDDLPAXDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTL 138
Query: 144 XSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXX 203
G G GQ +D E K +SL+EL F+H HKT +
Sbjct: 139 AFNAGLNGXVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKXGCEICELNNEESN 198
Query: 204 RMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRD--KATYPKLVGIDGSKKHAKE 261
++ G +G+ +Q+ +DI+DV S +E++G+ D K ++ L+G++ + K +
Sbjct: 199 QIYKLGLKLGLIFQINDDIIDVTTS---QEQSGKPTNNDIHKNSFVNLLGLEQAIKTKEN 255
Query: 262 LIAEAKQELAYFDPTRAAPLDHLV 285
L+ E +Q+L + A + +L+
Sbjct: 256 LLNECEQDLEKLNEKLAQXIQNLI 279
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 9/221 (4%)
Query: 44 HEAMRYSLP-GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDND 102
EAM YS GG R+ L + E +G + + +A A+EL T ++I DDLP +DN
Sbjct: 35 EEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNA 94
Query: 103 DLRRGKPSNHKVFGEATAILACQALHCLAMQHXXXXXXXXXXSAVGSEG--IAAGQIMDI 160
D RRG PS H+ +GE A+LA L LA + G+ MD+
Sbjct: 95 DFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDV 154
Query: 161 NSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWN 220
E + + +S+ + R M G+ G+A+Q+++
Sbjct: 155 EFERRXMEVSQ-EMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYD 213
Query: 221 DIVDVIGSPEMREKTGRDMMRDK--ATYPKLVGIDGSKKHA 259
D+ D++GS EK G+D+ +D T VGI +++ A
Sbjct: 214 DLXDILGS---FEKVGKDLGKDTEXVTLVXXVGIQXAREMA 251
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 128/266 (48%), Gaps = 14/266 (5%)
Query: 37 LPHPAILHEAMRYS-LPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDD 95
+ P L EAMR+ L GGKRL L I S ++GG + + A+E L +++ DD
Sbjct: 67 ITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLHCYSLVHDD 126
Query: 96 LPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQ-----------HXXXXXXXXXX 144
LP +D+DDLRRG+P+ H+ F EATAILA +L LA
Sbjct: 127 LPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLA 186
Query: 145 SAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXR 204
A G G+A GQ +D+ +E K + + KTG R
Sbjct: 187 RAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQR 246
Query: 205 MRNFGKYVGMAYQLWNDIVDVIG-SPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELI 263
+R FG+ +G+++QL +D++D+ + M + TG+D R K T L G +++ +E +
Sbjct: 247 LRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQV 306
Query: 264 AEAKQELAYFDPTRAAPLDHLVNFIV 289
AEA + LA + +AA L FI
Sbjct: 307 AEASELLAPYGE-KAAILIAAARFIA 331
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 43 LHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDND 102
L +A Y+ GGKRL + L I S + G S + A A A+E L +++ DD PC DND
Sbjct: 30 LRDAXAYAAQGGKRLRAFLAIESAAIHGISXAQAXPAALAVEALHAYSLVHDDXPCXDND 89
Query: 103 DLRRGKPSNHKVFGEATAILACQALHCLAMQ----------HXXXXXXXXXXSAVGSEGI 152
DLRRG P+ HK + +ATA+LA AL LA + A G+EG
Sbjct: 90 DLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGX 149
Query: 153 AAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYV 212
GQ +DI +E V L+ L+ I R + GK + + +
Sbjct: 150 VYGQALDIAAETAAVPLT-LDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYATAL 208
Query: 213 GMAYQLWNDIVDVIGSPEMREKT-GRDMMRDKATYPKLVGIDGSKKHAKE 261
G+A+Q+ +DI+DV G+ E K G+D KAT+ L+G+ G+K A +
Sbjct: 209 GLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAAD 258
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 13/253 (5%)
Query: 15 QVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQS 74
++ ++KAL + L ++ L I H R GK + L + + G
Sbjct: 16 ELEDFKAL----FDTPLSDSNALLDSVITHIRKR----NGKMMRPILVLLVARLYGAVTP 67
Query: 75 VAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQH 134
+ A ++ELL T +++ DD+ +D RRG+ S + +F ++LA L ++ H
Sbjct: 68 ATLHAAVSLELLHTASLVHDDV--VDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVH 125
Query: 135 XXXXXXXXXXSAVGSEG--IAAGQIMDINSEGKEVSLSELNF-IHRHKTGKFXXXXXXXX 191
V S G +A G+++ +++ E+ F + R KT
Sbjct: 126 AEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAA 185
Query: 192 XXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVG 251
R G+Y+G+ +Q+ +DI D S ++ + TG DM+ K T P L
Sbjct: 186 ALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLTLPALYA 245
Query: 252 IDGSKKHAKELIA 264
++ +K E IA
Sbjct: 246 LNTTKDAWAEQIA 258
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 9/202 (4%)
Query: 53 GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNH 112
GGK + L + S E+ G + V + A A+EL+ +++ DDL +D D+ RR + +
Sbjct: 53 GGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDL--MDGDEQRRHRDTVW 110
Query: 113 KVFGEATAILACQALHCLAMQHXXXXXXXXXXSAV-----GSEGIAAGQIMDINSEGKE- 166
KV G A AIL AL LA + A S + GQ DI+ E ++
Sbjct: 111 KVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDR 170
Query: 167 VSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVI 226
VS+ E + +KTG + +G ++G+A+Q +D++ +
Sbjct: 171 VSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIW 230
Query: 227 GSPEMREK-TGRDMMRDKATYP 247
G P+ K T D+ + K + P
Sbjct: 231 GDPDATGKQTWSDLRQRKKSLP 252
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 10/236 (4%)
Query: 53 GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNH 112
GGKRL + +A+ + G +A A+E + T ++ DD +D LRRGK + H
Sbjct: 64 GGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDD--VVDGSQLRRGKVAAH 121
Query: 113 KVFGEATAILACQALHCLAMQHXXXXXXXXXXS--AVGSEGIAAGQIMDINSEGKEVSLS 170
++G A ++L L A + A S IA G+++ + +++LS
Sbjct: 122 LIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQL-MRSHDLNLS 180
Query: 171 ELNFIH--RHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGS 228
+ ++ + KT + +R++G +G+A+QL +D +D G+
Sbjct: 181 QAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGA 240
Query: 229 PE-MREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEA--KQELAYFDPTRAAPL 281
E + + G D KAT P L+ I S E A ++E D RA L
Sbjct: 241 TETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRAREL 296
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 24/218 (11%)
Query: 43 LHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDN 101
EA+ Y + GGKRL L +A+ E + G A+ A +EL+ ++I DD+ +D
Sbjct: 33 FREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDI--IDR 90
Query: 102 DDLRRGKPSNHKVFGEATAILAC----QALHCLAMQHXXXXXXXXXXSAVGSEGIAAGQI 157
D+RRG P+ K FG+ AIL +A+ + + V + I G+
Sbjct: 91 GDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEV-IKAIDEGER 149
Query: 158 MDI-------------NSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXR 204
+DI + +EV+L + + KTG
Sbjct: 150 LDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEA 209
Query: 205 MRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRD 242
NFG G+A+Q+ +D++D+ G P +K G+++ +D
Sbjct: 210 AWNFGMAAGVAFQIIDDVLDIYGDP---KKFGKEIGKD 244
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 85/199 (42%), Gaps = 6/199 (3%)
Query: 53 GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNH 112
GGKRL L +A+ ++G + +A +E + T ++ DD +D RRG+P+ +
Sbjct: 52 GGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLLHDD--VVDESRQRRGRPTAN 109
Query: 113 KVFGEATAILACQALHCLAMQHXXXXXXXXXXS--AVGSEGIAAGQIMDINSEGKEVSLS 170
++ +++L L + Q A S IA G+++ + + +
Sbjct: 110 LLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTE 169
Query: 171 ELNF-IHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIG-S 228
++ + R KT + ++G +G+A+Q+ +D++D G S
Sbjct: 170 DIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKS 229
Query: 229 PEMREKTGRDMMRDKATYP 247
E+ + TG D K T P
Sbjct: 230 AEIGKNTGDDFRERKLTMP 248
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 18/231 (7%)
Query: 53 GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNH 112
GGKR+ + + E+ GS S +++ A A+E + ++I DDL LD +RR PS
Sbjct: 41 GGKRIRPIILLLVSEICSGSYSRSLNAALAVEXXHSASLIHDDL--LDQGLVRRNLPSAP 98
Query: 113 KVFGEATAILACQAL--HCLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLS 170
+ FG + A+L L +A G + A G+++D+ E + +
Sbjct: 99 EKFGPSGALLCGDYLIAKSIAFISPYGEKVIQDFGKAGXD-XAEGEVLDLKLEDESFGEN 157
Query: 171 ELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPE 230
+ KT R +FG +G AYQ+ +DI++ + E
Sbjct: 158 DYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE 217
Query: 231 MREKTGRDMMRDKATYPKLVGIDGSKKHA--------KELIAEAKQELAYF 273
G++ T P + SK+ A K +A AK+ L F
Sbjct: 218 -----GKESKFTSETLPHIYXKSTSKEEALKKSIDCVKLHVAAAKETLETF 263
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 8/205 (3%)
Query: 53 GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNH 112
GGKR+ + S + + + A ++EL+ +++ DD +DN D+RRG S H
Sbjct: 43 GGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDY--IDNSDMRRGNTSVH 100
Query: 113 KVFGEATAILACQALHCLAMQHXXXXXXXXXXSAVGSE--GIAAGQIMDINSEGKEVSLS 170
F + TAI L A+Q+ + G+ D ++ +S
Sbjct: 101 IAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGE-FDQMADRFNYPVS 159
Query: 171 ELNFIHR--HKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGS 228
++ R KT ++ FG +GM+YQ+ +DI+D
Sbjct: 160 FTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSD 219
Query: 229 PEMREK-TGRDMMRDKATYPKLVGI 252
K G D+ TYP + I
Sbjct: 220 EATLGKPVGSDIRNGHITYPLMAAI 244
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 11/212 (5%)
Query: 47 MRYSLPGGKRLMSTLCIASCEMIGGSQSVA---MSMACAIELLVTMAVIQDDLPCLDNDD 103
M + GGKR + + E G + ++ + A +E+ + DD +D
Sbjct: 67 MHLTRAGGKRFRPMFALLASEF--GEKPLSENVIKAAVVVEITHLATLYHDD--VMDEAS 122
Query: 104 LRRGKPSNHKVFGEATAILACQAL--HCLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDIN 161
+RRG PS + + + AILA L H + + E + GQ+ +
Sbjct: 123 MRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGTDTVAHFAETFGE-LVTGQMRETV 181
Query: 162 SEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWND 221
+ + R KTG ++NFG VGM +Q+ +D
Sbjct: 182 GPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDD 241
Query: 222 IVDVIGSPEMREKT-GRDMMRDKATYPKLVGI 252
I+D+ KT G D+ T P L +
Sbjct: 242 IIDIFSETHESGKTPGTDLREGVFTLPVLYAL 273
>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
pdb|3QKC|A Chain A, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
Length = 273
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 15 QVNEYKALKAKQINEALDEAVPLPHPAILHEAMRY-SLPGGKRLMSTLCIASCEMIGGSQ 73
+ Y+A I L +A+P+ P + E M + + + S LC+A+CE++GG +
Sbjct: 5 RTQTYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDR 64
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDN 101
S AM+ A A+ L+ A ++LP D
Sbjct: 65 SDAMAAAAAVHLMHVAAYTHENLPLTDG 92
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 27 INEALDEAV--PLPHPAILHEAMRYSLP--GGKRLMSTLCIASCEMIGGSQSVAMSMACA 82
I +AL E + L HP L+ + P GGK L L + S G + A A
Sbjct: 8 IRQALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATA 67
Query: 83 IELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHC 129
+EL ++ DD+ D + RRG+P+ H++ A+ A A+H
Sbjct: 68 LELFQNWVLVHDDIE--DGSEERRGRPALHRLHPMPLALNAGDAMHA 112
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 105/266 (39%), Gaps = 36/266 (13%)
Query: 8 DTLPKFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCE 67
D P+ + + L A+++ A D P+ A+ H + L GGKR+ A
Sbjct: 19 DKFPEVVRDRLTQFLDAQELTIA-DIGAPVTD-AVAH-LRSFVLNGGKRIRPLYAWAGFL 75
Query: 68 MIGGSQSVA------MSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKV------- 114
G ++ + + A ++E + A+I DD+ +D+ D RRG P+ H+
Sbjct: 76 AAQGHKNSSEKLESVLDAAASLEFIQACALIHDDI--IDSSDTRRGAPTVHRAVEADHRA 133
Query: 115 ---------FGEATAILACQALHCLA---MQHXXXXXXXXXXSAVGSEG----IAAGQIM 158
FG + +ILA A +Q + G + GQ++
Sbjct: 134 NNFEGDPEHFGVSVSILAGDXALVWAEDXLQDSGLSAEALARTRDAWRGXRTEVIGGQLL 193
Query: 159 DINSEGKEVSLSEL-NFIHRHKTGKFXXXXXXXXXXXXXXXX-XXXXRMRNFGKYVGMAY 216
DI E EL + ++R KT + + ++G +G+A+
Sbjct: 194 DIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAF 253
Query: 217 QLWNDIVDVIGSPEMREKTGRDMMRD 242
QL +D++ V G P + K D +R+
Sbjct: 254 QLRDDLLGVFGDPAITGKPAGDDIRE 279
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 93/242 (38%), Gaps = 22/242 (9%)
Query: 49 YSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGK 108
Y L GKR TL + +GG + A AIE+L + ++ DD+ +D D RRG
Sbjct: 44 YILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALDDI--VDLDATRRGD 101
Query: 109 PSNHKVFGEATAILACQAL--HCLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKE 166
+ V+G I L L + S + + G + D+
Sbjct: 102 KAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALNTSIELEKDTSVGALRDMYDNSDY 161
Query: 167 VSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVD-- 224
+ EL KTG +M + GKY+G+ YQ+ +D VD
Sbjct: 162 IRTIEL------KTGSL-FKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDFVDYK 214
Query: 225 ------VIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRA 278
+ GS + K R+ ++ Y + V ++ +K+ ELI+ + Y R+
Sbjct: 215 TKKVEEIDGSAKQLFKYYREGKLEE--YVRSVYLEYKQKY-DELISNIPFQSKYLSEIRS 271
Query: 279 AP 280
P
Sbjct: 272 LP 273
>pdb|3KRA|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
Length = 274
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 25/174 (14%)
Query: 59 STLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEA 118
STLC+A+CE++GG +S AM+ A AI L+ A + + LP D KP+ +G
Sbjct: 45 STLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLTDGSR-PVSKPAIQHKYGPN 103
Query: 119 TAILACQALHCLAMQHXXXXXXXXXXS--------------AVGSEGIAAG-----QIMD 159
+L + + A G EG+ +G +I+D
Sbjct: 104 VELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVD 163
Query: 160 INSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVG 213
N+ SL + ++ + K G+ ++RNFG Y G
Sbjct: 164 GNT-----SLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQG 212
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 92/242 (38%), Gaps = 22/242 (9%)
Query: 49 YSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGK 108
Y L GKR TL + +GG + A AIE+L + ++ D+ +D D RRG
Sbjct: 44 YILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALCDI--VDLDATRRGD 101
Query: 109 PSNHKVFGEATAILACQAL--HCLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKE 166
+ V+G I L L + S + + G + D+
Sbjct: 102 KAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALNTSIELWKDTSVGALRDMYDNSDY 161
Query: 167 VSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVD-- 224
+ EL KTG +M + GKY+G+ YQ+ +D VD
Sbjct: 162 IRTIEL------KTGSL-FKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDFVDYK 214
Query: 225 ------VIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRA 278
+ GS + K R+ ++ Y + V ++ +K+ ELI+ + Y R+
Sbjct: 215 TKKVEEIDGSAKQLFKYYREGKLEE--YVRSVYLEYKQKY-DELISNIPFQSKYLSEIRS 271
Query: 279 AP 280
P
Sbjct: 272 LP 273
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 16/206 (7%)
Query: 36 PLPHP--AILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQ 93
P+ H A+L + PG L ST A+ + + + A AIE+L +I
Sbjct: 42 PIHHKILALLKSGGKLLRPGYFYLFSTFGNAA------TPAQLQAGAAAIEILHVGTLIH 95
Query: 94 DDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHXXXXXXXXXXSAVGSEG-- 151
DD+ +D+ RRG + +G+ AI A + + +
Sbjct: 96 DDV--IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMH 153
Query: 152 -IAAGQI--MDINSEGKEVSLSELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNF 208
I G++ MD+N + LN I KT + R R+
Sbjct: 154 RILQGELHQMDLNYREDITLDAYLNEI-AGKTAELFALSCYQGAQLAGAPQSVIDRTRDI 212
Query: 209 GKYVGMAYQLWNDIVDVIGSPEMREK 234
G +G AYQ+ +DI+D G P+ +K
Sbjct: 213 GIAIGCAYQMLDDILDYAGDPKRTQK 238
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 18/207 (8%)
Query: 36 PLPHP--AILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQ 93
P+ H A+L + PG L ST A+ + + + A AIE+L +I
Sbjct: 35 PIHHKILALLKSGGKLLRPGYFYLFSTFGNAA------TPAQLQAGAAAIEILHVGTLIH 88
Query: 94 DDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHXXXXXXXXXXSAVGSEG-- 151
DD+ +D+ RRG + +G+ AI A + + +
Sbjct: 89 DDV--IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMH 146
Query: 152 -IAAGQI--MDINSEGKEVSL-SELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRN 207
I G++ MD+N ++++L + LN I KT + R R+
Sbjct: 147 RILQGELHQMDLNYR-EDITLDAYLNEI-AGKTAELFALSCYQGAQLAGAPQSVIDRTRD 204
Query: 208 FGKYVGMAYQLWNDIVDVIGSPEMREK 234
G +G AYQ+ +DI+D G P+ +K
Sbjct: 205 IGIAIGCAYQMLDDILDYAGDPKRTQK 231
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 27/179 (15%)
Query: 68 MIGGSQSVAMS--------MACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEAT 119
+IG S + S +A E++ +++ DD+ LD+ D RRG S + V G
Sbjct: 73 LIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKM 130
Query: 120 AILA--------CQALHCLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSE 171
++LA C AL L A E + G+ M+I S E S
Sbjct: 131 SVLAGDFLLSRACGALAALKNTEVVALL------ATAVEHLVTGETMEITS-STEQRYSM 183
Query: 172 LNFIHR--HKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGS 228
++ + +KT +G+ +G+A+QL +DI+D G+
Sbjct: 184 DYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGT 242
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 25/178 (14%)
Query: 68 MIGGSQSVAMS--------MACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEAT 119
+IG S + S +A E++ +++ DD+ LD+ D RRG S + V G
Sbjct: 73 LIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKM 130
Query: 120 AILA--------CQALHCLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSE-GKEVSLS 170
++LA C AL L A E + G+ M+I S S+
Sbjct: 131 SVLAGDFLLSRACGALAALKNTEVVALL------ATAVEHLVTGETMEITSSTAARYSMD 184
Query: 171 ELNFIHRHKTGKFXXXXXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGS 228
+KT +G+ +G+A+QL +DI+D G+
Sbjct: 185 YYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGT 242
>pdb|3OAB|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 264
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 59 STLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLP 97
STLC+A+CE++GG +S AM+ A AI L+ A + + LP
Sbjct: 45 STLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLP 83
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 51 LPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPS 110
L GK L + ++ + ++ +ELL +++ DD+ DN LRRG+ +
Sbjct: 37 LKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDIE--DNAPLRRGQTT 94
Query: 111 NHKVFGEATAILACQALHCLAMQ 133
+H +FG + I ++ AMQ
Sbjct: 95 SHLIFGVPSTINTANYMYFRAMQ 117
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 24/245 (9%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL+ +++ DD +D RRGK + + ++G+ A+ A A H
Sbjct: 61 EAAISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EAGNNKARRAALNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPK 248
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPL 232
Query: 249 LVGID 253
+ ++
Sbjct: 233 VTAME 237
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 42 ILHEAMRY--SLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCL 99
IL E +Y LPG K++ + L A + + + E+L +++ DD+
Sbjct: 12 ILLEPYKYLLQLPG-KQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIE-- 68
Query: 100 DNDDLRRGKPSNHKVFGEATAILACQALHCLAMQ 133
DN LRRG P H ++G + I + ++ L ++
Sbjct: 69 DNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLE 102
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 24/245 (9%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL+ +++ DD +D RRGK + + ++G+ A+ A A H
Sbjct: 61 EDAISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EAGNNKARRAALNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPK 248
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPL 232
Query: 249 LVGID 253
+ ++
Sbjct: 233 VTAME 237
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 77 MSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQAL 127
+ A +ELL ++++QDD +D D RRG + ++G+ AI+A L
Sbjct: 71 LEAAAIVELLHVVSLLQDD--VMDQHDQRRGIKTPRAMYGDGRAIVASDWL 119
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 24/245 (9%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSAKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL+ +++ DD +D RRGK + + ++G+ A+ A A H
Sbjct: 61 EDAISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EIGNNKLRRAFLNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPK 248
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPL 232
Query: 249 LVGID 253
+ ++
Sbjct: 233 VTAME 237
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 97/239 (40%), Gaps = 24/239 (10%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL+ +++ DD +D RRGK + + ++G+ A+ A A H
Sbjct: 61 EDAISSLAALELVHLYSLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EIGNNKLRRAFLNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYP 247
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFP 231
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 24/245 (9%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL+ +++ DD +D RRGK + + ++G+ A+ A A H
Sbjct: 61 EDAISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EIGNNKARRAALNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPK 248
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPL 232
Query: 249 LVGID 253
+ ++
Sbjct: 233 VTAME 237
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 97/239 (40%), Gaps = 24/239 (10%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL+ +++ DD +D RRGK + + ++G+ A+ A A H
Sbjct: 61 EDAISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EIGNNKLRRAFLNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYP 247
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFP 231
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 24/245 (9%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLAVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL+ +++ DD +D RRGK + + ++G+ A+ A A H
Sbjct: 61 EDAISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EIGNNKLRRAFLNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPK 248
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPL 232
Query: 249 LVGID 253
+ ++
Sbjct: 233 VTAME 237
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 24/245 (9%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL+ +++ DD +D RRGK + + ++G+ A+ A A H
Sbjct: 61 EDAISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EIGNNKLRRAALNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPK 248
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPL 232
Query: 249 LVGID 253
+ ++
Sbjct: 233 VTAME 237
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 24/245 (9%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQ 133
A+S A+EL+ +++ DD +D RRGK + + ++G+ A+ A L ++ +
Sbjct: 61 EDAISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAV-AAGDLVLVSAE 117
Query: 134 HXXX-----XXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
H + +G ++ ++++ S K ++ E I K+G
Sbjct: 118 HTVEEIGNNKLRRAFLNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPK 248
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPL 232
Query: 249 LVGID 253
+ ++
Sbjct: 233 VTAME 237
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 13/183 (7%)
Query: 76 AMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALHCL 130
A+S A+EL+ +++ DD +D RRGK + + ++G+ A+ A A H +
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTV 120
Query: 131 AMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXXXX 190
+ + +G ++ ++++ S K ++ E I K+G
Sbjct: 121 E-EIGNNKLRRAFLNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQL 177
Query: 191 XXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLV 250
+ N G +G YQ+++DI+D G ++ + D+ A++P +
Sbjct: 178 PALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVT 234
Query: 251 GID 253
++
Sbjct: 235 AME 237
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 24/245 (9%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL +++ DD +D RRGK + + ++G+ A+ A A H
Sbjct: 61 EDAISSLAALELYHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EIGNNKLRRAFLNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPK 248
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPL 232
Query: 249 LVGID 253
+ ++
Sbjct: 233 VTAME 237
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 96/239 (40%), Gaps = 24/239 (10%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL+ ++ DD +D RRGK + + ++G+ A+ A A H
Sbjct: 61 EDAISSLAALELVHLYFLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EIGNNKLRRAFLNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYP 247
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFP 231
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 96/239 (40%), Gaps = 24/239 (10%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL+ ++ DD +D RRGK + + ++G+ A+ A A H
Sbjct: 61 EDAISSLAALELVHLAFLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EIGNNKLRRAFLNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYP 247
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFP 231
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 32/203 (15%)
Query: 76 AMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLA---M 132
A+++ +E++ T +++ DD +D +RR PS + +FG A++ + A +
Sbjct: 59 ALNLCTIVEMIQTASLLHDD--VIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFEL 116
Query: 133 QHXXXXXXXXXXSAVGSEGIAAGQIMDI------NSEGKEVSLSELNFIHRHKTGKFXXX 186
+AV ++ G+I D+ NS+ ++ I KT F
Sbjct: 117 SKMGELIAQALSNAVLR--LSRGEIEDVFVGECFNSDKQKYWR-----ILEDKTAHFIEA 169
Query: 187 XXXXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDV------IGSPEMREKTGRDMM 240
+FG GMA+Q+ +D++D+ +G P D
Sbjct: 170 SLKSMAILLNKDAKIYA---DFGLNFGMAFQIIDDLLDITQDAKTLGKPNF-----SDFK 221
Query: 241 RDKATYPKLVGIDGSKKHAKELI 263
K T P L+ + +H + L+
Sbjct: 222 EGKTTLPYLLLYEKLNQHDQGLL 244
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 24/245 (9%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL+ +++ DD +D RGK + + ++G+ A+ A A H
Sbjct: 61 EDAISSLAALELVHLASLLHDD--VIDGARFARGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EIGNNKLRRAFLNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPK 248
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPL 232
Query: 249 LVGID 253
+ ++
Sbjct: 233 VTAME 237
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 24/245 (9%)
Query: 17 NEYKALKAKQ-INEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS-Q 73
N Y+ K K+ I + L + P E + LP GK L L I S + G
Sbjct: 9 NSYELEKVKERIEQILSQFFP--------EQIMKDLPLYGKMLRVRLSILSFKNRGVEIG 60
Query: 74 SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALH 128
A+S A+EL+ +++ DD +D R GK + + ++G+ A+ A A H
Sbjct: 61 EDAISSLAALELVHLASLLHDD--VIDGARFRAGKETINFMYGDKAAVAAGDLVLVSAFH 118
Query: 129 CLAMQHXXXXXXXXXXSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFXXXXX 188
+ + + +G ++ ++++ S K ++ E I K+G
Sbjct: 119 TVE-EIGNNKLRRAFLNVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 189 XXXXXXXXXXXXXXXRMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPK 248
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 176 QLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPL 232
Query: 249 LVGID 253
+ ++
Sbjct: 233 VTAME 237
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 51 LPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPS 110
LPG RL+ L + ++ +A S A ++L +A+I D +D L +GKP
Sbjct: 94 LPGIGRLLCQLKNENIKI-----GLASSSRNAPKILRRLAIIDDFHAIVDPTTLAKGKP- 147
Query: 111 NHKVFGEATAILACQALHCLAMQHXXXXXXXXXXSAVGSEGIAAGQ 156
+ +F A A L C A++ + + G+ GQ
Sbjct: 148 DPDIFLTAAAXLDVSPADCAAIEDAEAGISAIKSAGXFAVGVGQGQ 193
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 204 RMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYP 247
++ + +G +Q+ +D +D+ G K G D+ +K T+P
Sbjct: 271 KIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWP 314
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 204 RMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYP 247
++ + +G +Q+ +D +D+ G K G D+ +K T+P
Sbjct: 270 KIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWP 313
>pdb|2JAP|A Chain A, Clavulanic Acid Dehydrogenase: Structural And Biochemical
Analysis Of The Final Step In The Biosynthesis Of The
Beta- Lactamase Inhibitor Clavulanic Acid
pdb|2JAP|B Chain B, Clavulanic Acid Dehydrogenase: Structural And Biochemical
Analysis Of The Final Step In The Biosynthesis Of The
Beta- Lactamase Inhibitor Clavulanic Acid
pdb|2JAP|C Chain C, Clavulanic Acid Dehydrogenase: Structural And Biochemical
Analysis Of The Final Step In The Biosynthesis Of The
Beta- Lactamase Inhibitor Clavulanic Acid
pdb|2JAP|D Chain D, Clavulanic Acid Dehydrogenase: Structural And Biochemical
Analysis Of The Final Step In The Biosynthesis Of The
Beta- Lactamase Inhibitor Clavulanic Acid
Length = 247
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 15 QVNEYKALKAKQINEALDEAVPLPHPAILHE 45
++++ + L+A+ I EA+ AV PH A +HE
Sbjct: 208 RISQIRKLQAQDIAEAVRYAVTAPHHATVHE 238
>pdb|2JAH|A Chain A, Biochemical And Structural Analysis Of The Clavulanic Acid
Dehydeogenase (Cad) From Streptomyces Clavuligerus
pdb|2JAH|B Chain B, Biochemical And Structural Analysis Of The Clavulanic Acid
Dehydeogenase (Cad) From Streptomyces Clavuligerus
pdb|2JAH|C Chain C, Biochemical And Structural Analysis Of The Clavulanic Acid
Dehydeogenase (Cad) From Streptomyces Clavuligerus
pdb|2JAH|D Chain D, Biochemical And Structural Analysis Of The Clavulanic Acid
Dehydeogenase (Cad) From Streptomyces Clavuligerus
Length = 247
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 15 QVNEYKALKAKQINEALDEAVPLPHPAILHE 45
++++ + L+A+ I EA+ AV PH A +HE
Sbjct: 208 RISQIRKLQAQDIAEAVRYAVTAPHHATVHE 238
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 205 MRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYP 247
+ N G +G YQ+++DI+D G ++ + D+ A++P
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFP 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,572,515
Number of Sequences: 62578
Number of extensions: 264185
Number of successful extensions: 721
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 93
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)