BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037594
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 295 bits (755), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 206/293 (70%), Gaps = 16/293 (5%)
Query: 11 PKFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMI 69
P F Y K IN+AL+ A+PL PA +HE+MRYSL GGKR+ LC+A+CE++
Sbjct: 74 PPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELV 133
Query: 70 GGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHC 129
GG+ S+AM ACA+E++ TM++I DDLPC+DNDDLRRGKP+NH VFGE A+LA AL
Sbjct: 134 GGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLA 193
Query: 130 LAMQHIAIIKAKNINS------------AVGSEGIAAGQIMDINSEG-KEVSLSELNFIH 176
A +HIA + N++S A+G+EG+ AGQ++DINSEG EV L +L FIH
Sbjct: 194 FAFEHIA-VSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIH 252
Query: 177 RHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVI-GSPEMREKT 235
HKT K +E ++V G I+GGG +EE+E++R + + +G+ +Q+ +DI+DV S E+ +
Sbjct: 253 IHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTA 312
Query: 236 GRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFI 288
G+D++ DK TYPKL+GI+ S++ A++L EA+++LA FDP +AAPL L N+I
Sbjct: 313 GKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYI 365
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 287 bits (734), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 142/296 (47%), Positives = 201/296 (67%), Gaps = 18/296 (6%)
Query: 11 PKFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMI 69
P F Y KA+ +N+ALD AVPL P +HEAMRYSL GGKR+ LCIA+CE++
Sbjct: 71 PSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELV 130
Query: 70 GGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHC 129
GG +S AM ACA+E++ TM++I DDLPC+DNDDLRRGKP+NHKVFGE A+LA AL
Sbjct: 131 GGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLS 190
Query: 130 LAMQHIAIIKAKNINS-------------AVGSEGIAAGQIMDINSEG---KEVSLSELN 173
A +H+A + ++ S A+G+EG+ AGQ++DI+SEG +V L L
Sbjct: 191 FAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLE 250
Query: 174 FIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVI-GSPEMR 232
FIH HKT +EAS V G I+GGG+++EIER+R F + +G+ +Q+ +DI+DV S E+
Sbjct: 251 FIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELG 310
Query: 233 EKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFI 288
+ G+D++ DK TYPK++G++ S++ A++L EA+ +L FD + APL L N+I
Sbjct: 311 KTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYI 366
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 281 bits (720), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 142/297 (47%), Positives = 200/297 (67%), Gaps = 17/297 (5%)
Query: 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGS 72
F Y KA +N+ALD AVPL P +HEAMRYSL GGKR+ LCIA+CE++GG
Sbjct: 70 FDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGE 129
Query: 73 QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132
+S+AM CA+E++ TM++I DDLPC+DNDDLRRGKP+NHKV+GE A+LA AL A
Sbjct: 130 ESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAF 189
Query: 133 QHIAIIKAKNIN------------SAVGSEGIAAGQIMDINSEGKE---VSLSELNFIHR 177
+H+A + ++ A+G+EG+ AGQ++DI+SEG + V L L FIH
Sbjct: 190 EHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHL 249
Query: 178 HKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVI-GSPEMREKTG 236
HKT +EAS V G IIGGG++EEIER+R F + +G+ +Q+ +DI+DV S E+ + G
Sbjct: 250 HKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAG 309
Query: 237 RDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293
+D++ DK TYPKL+G++ S++ A++L EA+ +L FD + APL L N+I + N
Sbjct: 310 KDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 280 bits (716), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 140/285 (49%), Positives = 199/285 (69%), Gaps = 16/285 (5%)
Query: 19 YKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAM 77
Y KA +N+AL++AV + P +HE+MRYSL GGKR+ LCIA+CE+ GG++SVAM
Sbjct: 69 YMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAM 128
Query: 78 SMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAI 137
ACA+E++ TM+++ DDLPC+DNDDLRRGKP+NHKVFGE A+LA AL A +HIA
Sbjct: 129 PSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIA- 187
Query: 138 IKAKNINS------------AVGSEGIAAGQIMDINSEG-KEVSLSELNFIHRHKTGKFI 184
K ++S +GSEG+ AGQ++D+ SEG +V L L FIH HKT +
Sbjct: 188 TATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALL 247
Query: 185 EASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVI-GSPEMREKTGRDMMRDK 243
E S+V G I+GG N+E+I ++R F + +G+ +Q+ +DI+DV S E+ + G+D++ DK
Sbjct: 248 EGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADK 307
Query: 244 ATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFI 288
TYPKL+GID S++ A++L EA+++LA FDP +AAPL L N+I
Sbjct: 308 VTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYI 352
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 274 bits (701), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 139/295 (47%), Positives = 198/295 (67%), Gaps = 15/295 (5%)
Query: 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPG-GKRLMSTLCIASCEMIGGS 72
F Y KA +NEALD AV L P +HEA+RYSL GKR+ LCIA+CE++GG
Sbjct: 53 FDFTSYMIGKANAVNEALDSAVSLREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGE 112
Query: 73 QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132
+SVA+ ACA+E++ TM++I DDLPC+DNDDLRRGKP+NHKVFGE A+LA AL A
Sbjct: 113 ESVALPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAF 172
Query: 133 QHIA---------IIKA-KNINSAVGSEGIAAGQIMDINSEG---KEVSLSELNFIHRHK 179
+H+A +++A + A+GS+G+ AGQ++D+ S G +V L L FIH HK
Sbjct: 173 EHLATSTAVSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHK 232
Query: 180 TGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-GRD 238
T +EA+ V G I+GGG++EE+E++R F + +G+ +Q+ +DI+DV S E KT G+D
Sbjct: 233 TAVLLEAATVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKD 292
Query: 239 MMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293
++ DK TYPKL+G++ SK A +L+++A ++L FD +R PL L N+I N
Sbjct: 293 LIADKLTYPKLMGLEKSKDFADKLLSDAHEQLHGFDSSRVKPLLALANYIAKRQN 347
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 272 bits (696), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/289 (47%), Positives = 195/289 (67%), Gaps = 14/289 (4%)
Query: 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGS 72
F Y KA +N+ALDEA+ + P ++HEAMRYSL GGKR+ LC+A+CE++GG+
Sbjct: 76 FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGN 135
Query: 73 QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132
Q AM+ ACA+E++ TM++I DDLPC+DNDDLRRGKP+NHK++GE A+LA +L A
Sbjct: 136 QENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAF 195
Query: 133 QHIA----------IIKA-KNINSAVGSEGIAAGQIMDINSEGK-EVSLSELNFIHRHKT 180
+HI I+ A + ++G+EG+ AGQ+ DI G VSL L FIH HKT
Sbjct: 196 EHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKT 255
Query: 181 GKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-GRDM 239
+E+S+V G I+GGG E+E++R F + +G+ +Q+ +DI+DV S E KT G+D+
Sbjct: 256 AALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 315
Query: 240 MRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFI 288
+ DK TYPKL+G++ +K+ A EL EAKQ+L FD +AAPL L ++I
Sbjct: 316 VVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYI 364
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 269 bits (688), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/289 (46%), Positives = 198/289 (68%), Gaps = 14/289 (4%)
Query: 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYS-LPGGKRLMSTLCIASCEMIGGS 72
F Y KA+ IN ALDEA+PL P +H+AMRY+ L GGKR+ LC+A+CE++GG
Sbjct: 79 FDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGE 138
Query: 73 QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132
+ +A+ ACA+E++ TM++I+DDLPC+DNDDLRRGKP+ HKVFGE+ AIL+ AL LA
Sbjct: 139 ERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAF 198
Query: 133 QHIA--------IIKA-KNINSAVGSEGIAAGQIMDINSEGKE---VSLSELNFIHRHKT 180
+H+ +++A K + ++G++G+ AGQ D++SEG E V L +L +IH HKT
Sbjct: 199 EHLTEADVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKT 258
Query: 181 GKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-GRDM 239
G +EAS V G +IGGG E+EIE++RNF + +G+ +Q+ +DI+D S E KT G+D
Sbjct: 259 GSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDK 318
Query: 240 MRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFI 288
+ K TYPK++G++ SK+ ++L +A++ L FD + PL L NFI
Sbjct: 319 VAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFI 367
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 267 bits (682), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 133/289 (46%), Positives = 190/289 (65%), Gaps = 14/289 (4%)
Query: 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYS-LPGGKRLMSTLCIASCEMIGGS 72
F+ + Y KA+ +N+AL+EA+P+ P +HEAMRY+ L GKR+ LC+ASCE++GG
Sbjct: 83 FEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQ 142
Query: 73 QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132
++ AM ACA+E++ TM++I+DDLPC+DNDDLRRGKP+ HKV+GE AIL+ AL LA
Sbjct: 143 ENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAF 202
Query: 133 QHIA---------IIKAKNINSAVGSEGIAAGQIMDINSEG---KEVSLSELNFIHRHKT 180
+H+ + + + ++G+ G+ AGQ MDI+SEG EV L L FIH HKT
Sbjct: 203 EHMTTAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKT 262
Query: 181 GKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-GRDM 239
+E + V G IIGGG++EEIE +R F + +G+ +Q+ +DI+D S E KT G+D
Sbjct: 263 AVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQ 322
Query: 240 MRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFI 288
+ K TYPKL+G++ SK+ K L +A+Q L F + APL L FI
Sbjct: 323 LAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFI 371
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/297 (46%), Positives = 194/297 (65%), Gaps = 17/297 (5%)
Query: 14 FQVNEYKALKAKQINEALDEAVPLPHPAI-LHEAMRYSL-PGGKRLMSTLCIASCEMIGG 71
F+ Y KAK +N+AL+EAVPL P + + EAMRY+L GKR+ LC+A+CE++GG
Sbjct: 48 FKFMSYMVNKAKSVNKALEEAVPLREPELKIREAMRYTLLSDGKRVRPMLCLAACELVGG 107
Query: 72 SQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLA 131
+S AMS ACAIE+L ++I DDLPC+DND LRRGKP+NH VFGE+ AILA QAL LA
Sbjct: 108 QESTAMSAACAIEMLHASSLILDDLPCMDNDSLRRGKPTNHIVFGESIAILASQALIALA 167
Query: 132 MQH-----IAIIKAKNINSAV-----GSEGIAAGQIMDINSEG----KEVSLSELNFIHR 177
+Q A + + I V EG+ AGQ D+ EG + L L FIH
Sbjct: 168 VQKTTSSTFADVPPERILKTVQEMVKAVEGLVAGQQADLAGEGMRFDSDTGLEHLEFIHI 227
Query: 178 HKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-G 236
HKT +EA+ V G I+GGG++EEIER+R++ + +G+ +Q+ +D++DV S E KT G
Sbjct: 228 HKTAALLEAAAVMGAIMGGGSDEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAG 287
Query: 237 RDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293
+D++ K TYP+L+G++ SK++A+ L EA++ L FD + APL L ++IV+ N
Sbjct: 288 KDLIAGKLTYPRLMGVEKSKEYAERLNIEAREHLLGFDIDKVAPLVSLADYIVNRQN 344
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 245 bits (625), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 135/297 (45%), Positives = 199/297 (67%), Gaps = 17/297 (5%)
Query: 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGS 72
F Y KA+ +N ALD +VPL P + EA+RYSL GGKR+ LCIA+CE++GG
Sbjct: 64 FDFKLYMIRKAESVNAALDVSVPLLKPLTIQEAVRYSLLAGGKRVRPLLCIAACELVGGD 123
Query: 73 QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132
++ AMS ACA+E++ T ++I DDLPC+DN DLRRGKP+NHKV+GE A+LA AL LA
Sbjct: 124 EATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAF 183
Query: 133 QHIAIIKAK------------NINSAVGSEGIAAGQIMDINSEG---KEVSLSELNFIHR 177
+H+ ++ + + A+G+ G+ AGQ++D+ SE +V L L FIH
Sbjct: 184 EHMTVVSSGLVAPEKMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHL 243
Query: 178 HKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-G 236
HKT +EA+ V GVI+GGG E+EIE++R + + +G+ +Q+ +DI+DV S E KT G
Sbjct: 244 HKTAALLEAAAVLGVIMGGGTEQEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAG 303
Query: 237 RDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293
+D+M K TYP+L+G++GS++ A++L EA+++L FDP++AAPL L ++I N
Sbjct: 304 KDVMAGKLTYPRLIGLEGSREVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 196/293 (66%), Gaps = 18/293 (6%)
Query: 14 FQVNEYKALKAKQINEALDEA-VPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGG 71
F Y KA+ +N ALD + VPL P + EA+RYSL GGKR+ LCIA CE++GG
Sbjct: 64 FDFKLYMIRKAESVNAALDVSIVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGG 123
Query: 72 SQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLA 131
++ AMS ACA+E++ T ++I DDLPC+DN DLRRGKP+NHKVFGE A+LA AL LA
Sbjct: 124 DEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVFGEDMAVLAGDALLALA 183
Query: 132 MQHIAIIKAKNINS------------AVGSEGIAAGQIMDINSEG---KEVSLSELNFIH 176
+H+ ++ + + S A+G++G+ AGQ++D++SE +V L L FIH
Sbjct: 184 FEHMTVVSSGLVASERMIRAVVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIH 243
Query: 177 RHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT- 235
HKT +EA+ V G I+GGG EEEIE++R + + +G+ +Q+ +DI+DV S E KT
Sbjct: 244 LHKTAALLEAAAVIGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTA 303
Query: 236 GRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFI 288
G+D+M K TYP+L+G++ S++ A++L EA+++L F+ +AAPL L ++I
Sbjct: 304 GKDVMAGKLTYPRLIGLERSREVAEKLSREAEEQLLGFESDKAAPLVALASYI 356
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/297 (45%), Positives = 197/297 (66%), Gaps = 17/297 (5%)
Query: 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGS 72
F Y KA+ +N ALD +VPL P + EA+RYSL GGKR+ LCIA CE++GG
Sbjct: 64 FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGD 123
Query: 73 QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132
++ AMS ACA+E++ T ++I DDLPC+DN DLRRGKP+NHKV+GE A+LA AL LA
Sbjct: 124 EATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAF 183
Query: 133 QHIAIIKAK------------NINSAVGSEGIAAGQIMDINSE---GKEVSLSELNFIHR 177
+H+ ++ + + A+G+ G+ AGQ++D+ SE +V L L FIH
Sbjct: 184 EHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHL 243
Query: 178 HKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-G 236
HKT +EA+ V GVI+GGG EEEIE++R + + +G+ +Q+ +DI+DV S E KT G
Sbjct: 244 HKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAG 303
Query: 237 RDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293
+D+M K TYP+L+G++ SK+ A++L EA+++L FDP++AAPL L ++I N
Sbjct: 304 KDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 235 bits (599), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 117/295 (39%), Positives = 192/295 (65%), Gaps = 17/295 (5%)
Query: 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGS 72
F + Y + + + + L++++P +P +++++RYSL GGKR+ LC+ASCE+ GG+
Sbjct: 8 FNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGT 67
Query: 73 QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132
+A+ ACA+E++ TM++I DDLP +DND RRGKP+NH ++GE AILA AL A
Sbjct: 68 MEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAF 127
Query: 133 QHIAIIKAKNINS------------AVGSEGIAAGQIMDINSEGK-EVSLSELNFIHRHK 179
+ IA + KN+ + +V + G+ GQI+D++SEGK + +L LNFIH HK
Sbjct: 128 EFIA-TQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHK 186
Query: 180 TGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-GRD 238
TG +EA+++SG ++ G E+++ R + + +G+A+Q+ +D++D+I + E K+ G+D
Sbjct: 187 TGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKD 246
Query: 239 MMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293
+ KATYP G++ S K A+ L+ EAK+E+ YFD +A PL + +FIV+ N
Sbjct: 247 LKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300
>sp|Q9LHR4|GGPPC_ARATH Geranylgeranyl pyrophosphate synthase 12, chloroplastic
OS=Arabidopsis thaliana GN=At3g32040 PE=2 SV=1
Length = 360
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 194/297 (65%), Gaps = 17/297 (5%)
Query: 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGS 72
F Y KA+ ++ AL+ +VP P + EA+RYSL GGKR+ LCIA+CE++GG
Sbjct: 64 FDFKSYMIRKAESVSMALNVSVPPQDPLAIQEAVRYSLLAGGKRVRPLLCIAACELVGGD 123
Query: 73 QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132
++ AMS ACA+E++ T ++I DDLPC+D+ DLRRGKP+NHKVFGE A+LA AL LA
Sbjct: 124 EATAMSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKVFGEHMAVLAGDALLALAF 183
Query: 133 QHIAIIKA------------KNINSAVGSEGIAAGQIMDINSEG---KEVSLSELNFIHR 177
+H+ ++ + + A+G++G+ AGQ+ D+ S+G +V L L FIH
Sbjct: 184 EHMTVVSSGLVAPERMIRSVTELAKAIGTKGLVAGQVSDLCSQGLNPYDVGLERLEFIHL 243
Query: 178 HKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-G 236
HKT +EA+ V G IIGGG EEEI+++R +G+ +G+ +Q+ +DI+DV S E KT G
Sbjct: 244 HKTAALLEAAAVLGAIIGGGTEEEIQKLRKYGRCIGLLFQVVDDIIDVTESTEELGKTAG 303
Query: 237 RDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293
+D+M K TYP+L+G++ S++ A++L EA ++L FD + APL L ++I N
Sbjct: 304 KDVMARKLTYPRLIGLERSREVAEKLRREAAEQLLGFDSNKVAPLVALASYIACRHN 360
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 190/302 (62%), Gaps = 27/302 (8%)
Query: 19 YKALKAKQINEALDEA-------VPLPHPAI-LHEAMRYSL-PGGKRLMSTLCIASCEMI 69
Y KAK IN+ALD + VPL P + +H+AMRY+L PGGKR+ LC+ +CE++
Sbjct: 35 YMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELV 94
Query: 70 GGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHC 129
GG +S AM ACA+E++ ++I DDLPC+D+D LRRGKP+NHKVFGE T+ILA AL
Sbjct: 95 GGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNALRS 154
Query: 130 LAMQHIAIIKAKNINS------------AVGSEGIAAGQIMDINSE-----GKEVSLSEL 172
LA++ + + S AVG+EG+ AGQ D+ E ++ L L
Sbjct: 155 LAVKQTLASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYL 214
Query: 173 NFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMR 232
+H HKT +EA+ V G I+GGG++EEIER++++ + VG+ +Q+ +D++D S E
Sbjct: 215 ELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEEL 274
Query: 233 EKT-GRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSF 291
KT G+D++ K TYPK++G+D ++++AK L EA++ L FD + PL L ++IV
Sbjct: 275 GKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKR 334
Query: 292 GN 293
N
Sbjct: 335 QN 336
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 228 bits (581), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 198/313 (63%), Gaps = 26/313 (8%)
Query: 2 INSQRNDTLP---------KFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL- 51
++SQ D +P F Y KA+ ++ AL+ +VPL P + EA+RYSL
Sbjct: 40 LSSQGGDMIPPEGKSNDRNSAFDFKSYMIRKAESVSAALNVSVPLQEPLTIQEAVRYSLL 99
Query: 52 PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSN 111
GGKR+ LCIA+CE++GG ++ AMS ACA+E++ T ++I DDLPC+D+ DLRRGKP+N
Sbjct: 100 AGGKRVRPLLCIAACELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTN 159
Query: 112 HKVFGEATAILACQALHCLAMQHIAIIK------------AKNINSAVGSEGIAAGQIMD 159
HK FGE A+LA AL LA +H+ + + A+G++G+ AGQ+ D
Sbjct: 160 HKEFGEDMAVLAGDALLALAFEHMTFVSNGLVAPERMIRAVMELAKAIGTKGLVAGQVTD 219
Query: 160 INSEG---KEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAY 216
+ S+G +V L L FIH HKT +EA+ V G I+GGG EEEIE++R + + +G+ +
Sbjct: 220 LCSQGLNPDDVGLERLEFIHLHKTAALLEAAAVLGAIMGGGTEEEIEKLRKYARCIGLLF 279
Query: 217 QLWNDIVDVIGSP-EMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDP 275
Q+ +DI+DV S E+ + G+D+M K TYP+L+G++ S++ A++L EA ++L FD
Sbjct: 280 QVVDDILDVTESTKELGKTAGKDVMAGKLTYPRLIGLERSREVAEKLRREAAEQLLGFDS 339
Query: 276 TRAAPLDHLVNFI 288
+AAPL L ++I
Sbjct: 340 DKAAPLVALASYI 352
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/257 (42%), Positives = 156/257 (60%), Gaps = 14/257 (5%)
Query: 37 LPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDD 95
L PA L +AM YSL GGKR+ L +++ +G +V + +ACAIE++ T ++I DD
Sbjct: 28 LEGPAKLKKAMAYSLEAGGKRIRPLLLLSTVRALGKDPAVGLPVACAIEMIHTYSLIHDD 87
Query: 96 LPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSAV-------- 147
LP +DNDDLRRGKP+NHKVFGEA AILA L A Q I I + I +V
Sbjct: 88 LPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQLITEIDDERIPPSVRLRLIERL 147
Query: 148 ----GSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIE 203
G EG+ AGQ D+ EGK ++LSEL +IHRHKTGK ++ S+ +G +IGG + +
Sbjct: 148 AKAAGPEGMVAGQAADMEGEGKTLTLSELEYIHRHKTGKMLQYSVHAGALIGGADARQTR 207
Query: 204 RMRNFGKYVGMAYQLWNDIVDVIGSPE-MREKTGRDMMRDKATYPKLVGIDGSKKHAKEL 262
+ F ++G+A+Q+ +DI+D+ G+ E + + G D +KATYP L+ + G+K+
Sbjct: 208 ELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATYPALLSLAGAKEKLAFH 267
Query: 263 IAEAKQELAYFDPTRAA 279
I A++ L D AA
Sbjct: 268 IEAAQRHLRNADVDGAA 284
>sp|O66126|ISPA_MICLU Farnesyl diphosphate synthase OS=Micrococcus luteus GN=fps PE=3
SV=1
Length = 291
Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/276 (42%), Positives = 163/276 (59%), Gaps = 17/276 (6%)
Query: 27 INEALDEAVPLPHPAI--LHEAMRYSLP-GGKRLMSTLCIASCEMIGGSQSVAMSMACAI 83
INE+L + HPA LHEA+ YSL GGKR+ L + + + +GG+ + A+
Sbjct: 16 INESL---LNKYHPAQSRLHEAINYSLSAGGKRIRPLLVLTTLDSLGGNAHDGLPFGIAL 72
Query: 84 ELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHI------AI 137
E++ T ++I DDLP +DNDD RRGK +NHK F EATAILA AL A Q I A
Sbjct: 73 EMIHTYSLIHDDLPAMDNDDYRRGKLTNHKRFDEATAILAGDALLTDAFQCILNTQLNAE 132
Query: 138 IKAKNIN---SAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVII 194
IK IN +A GS G+ GQ++D+ E K ++L+EL IH HKTG+ I A+IVS II
Sbjct: 133 IKLSLINLLSTASGSNGMVYGQMLDMQGEHKTLTLNELERIHIHKTGELIRAAIVSAGII 192
Query: 195 GGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-GRDMMRDKATYPKLVGID 253
N+ +IE++ GK VG+ +Q+ +DI+DV GS E KT G D+ DK+TY L+G++
Sbjct: 193 MNFNDAQIEQLNIIGKNVGLMFQIKDDILDVEGSFENIGKTVGSDLNNDKSTYVSLLGLE 252
Query: 254 GSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIV 289
SK+ + + E L P L L+ +IV
Sbjct: 253 ASKQLLNDKLTETYDALKTLQPIN-DNLKTLITYIV 287
>sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit,
chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
Length = 326
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 135/226 (59%), Gaps = 20/226 (8%)
Query: 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL--PGGKRLMSTLCIASCEMIGG 71
F + Y +IN+ LDEA+P+ HPA ++EAMRYS+ G KR +C+A+CE+ GG
Sbjct: 45 FDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGG 104
Query: 72 SQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLA 131
+ A ACA+E++ ++I DDLPC+D+D +RRGKPSNH V+G AILA AL LA
Sbjct: 105 DRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLA 164
Query: 132 MQHI------------AIIKA-KNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRH 178
QHI I++ I VGS G+AAGQ +D+ EG LS F+
Sbjct: 165 FQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDL--EGGPFPLS---FVQEK 219
Query: 179 KTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVD 224
K G E S V G ++GG E+E++ +R +G+ VGM YQ+ +DI +
Sbjct: 220 KFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITE 265
>sp|P54383|ISPA_BACSU Farnesyl diphosphate synthase OS=Bacillus subtilis (strain 168)
GN=ispA PE=3 SV=2
Length = 296
Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 99/246 (40%), Positives = 151/246 (61%), Gaps = 14/246 (5%)
Query: 37 LPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDD 95
L P L ++M YSL GGKRL + +A G S+ + + CA+E++ T ++I DD
Sbjct: 27 LDMPDSLKKSMLYSLQAGGKRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLIHDD 86
Query: 96 LPCLDNDDLRRGKPSNHKVFGEATAILACQALHC----LAMQHI-----AIIKAKNIN-- 144
LPC+D+DDLRRGKP+NHKVFGEATA+LA L L H+ A + + +N
Sbjct: 87 LPCMDDDDLRRGKPTNHKVFGEATAVLAGDGLLTESFKLITSHVSDEVSAEKRLRLVNEL 146
Query: 145 -SAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIE 203
SA G+EG+ GQ+ D+ +E ++V+L EL IH KT K + +++G I+ EE+IE
Sbjct: 147 ISAAGTEGMVGGQVADMEAENRQVTLEELESIHERKTAKLLGFCVIAGAILADAPEEDIE 206
Query: 204 RMRNFGKYVGMAYQLWNDIVDVIGSPE-MREKTGRDMMRDKATYPKLVGIDGSKKHAKEL 262
+R F ++G+ +Q+ +DI+D+ GS E + ++ G D DK+TYP L+ ++G+K
Sbjct: 207 TLRTFSSHIGIGFQIRDDILDLEGSEEKIGKRVGSDTTNDKSTYPSLLSLEGAKHKLDVH 266
Query: 263 IAEAKQ 268
I EAK+
Sbjct: 267 IKEAKR 272
>sp|P45204|ISPA_HAEIN Farnesyl diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispA PE=3 SV=1
Length = 295
Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/270 (38%), Positives = 158/270 (58%), Gaps = 24/270 (8%)
Query: 39 HPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLP 97
H A L EAM+Y+L GGKR+ L A+ +M+G + A AIE + ++I DDLP
Sbjct: 29 HNAPLLEAMKYALLLGGKRVRPFLVYATGQMLGAEKQTLDYAAAAIEAIHAYSLIHDDLP 88
Query: 98 CLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINS------------ 145
+D+D+LRRG P+ H F EATAILA AL A + + K NI++
Sbjct: 89 AMDDDNLRRGHPTCHIQFDEATAILAGDALQSFAFE--ILTKTPNISTEQKLALIQILAQ 146
Query: 146 AVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGG-NEEEIER 204
G +G+ GQ +D+ SE K++SLSEL IHR+KTG + A++ G I ++ +E+
Sbjct: 147 GAGVQGMCLGQSLDLISEHKQISLSELELIHRNKTGALLIAALKLGFICSPHFTDKRLEQ 206
Query: 205 -MRNFGKYVGMAYQLWNDIVDVIG-SPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKEL 262
+ + + +G+A+Q+ +DI+D+ G S E+ ++ G D+ DK+TYPKL+G+ G+K+ A++L
Sbjct: 207 SLTQYAEAIGLAFQVQDDILDIEGDSAEIGKQVGADLDLDKSTYPKLLGLSGAKQKAQDL 266
Query: 263 IAEAKQELAY--FDPTRAAPLDHLVNFIVS 290
A EL FD T A L FI++
Sbjct: 267 YQSALSELEKIPFDTTVRA----LAEFIIT 292
>sp|P22939|ISPA_ECOLI Farnesyl diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispA PE=1 SV=1
Length = 299
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 159/286 (55%), Gaps = 23/286 (8%)
Query: 25 KQINEALDEAV-PLPH---PAILHEAMRY-SLPGGKRLMSTLCIASCEMIGGSQSVAMSM 79
KQ N+AL + PLP P + E M+Y +L GGKRL L A+ M G S + +
Sbjct: 12 KQANQALSRFIAPLPFQNTPVV--ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAP 69
Query: 80 ACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIA--- 136
A A+E + ++I DDLP +D+DDLRRG P+ H FGEA AILA AL LA ++
Sbjct: 70 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAD 129
Query: 137 ---------IIKAKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEAS 187
I + SA G G+ GQ +D+++EGK V L L IHRHKTG I A+
Sbjct: 130 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAA 189
Query: 188 IVSGVIIGGGN-EEEIERMRNFGKYVGMAYQLWNDIVDVIG-SPEMREKTGRDMMRDKAT 245
+ G + G + + + + +G+A+Q+ +DI+DV+G + + ++ G D K+T
Sbjct: 190 VRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKST 249
Query: 246 YPKLVGIDGSKKHAKELIAEAKQELAYF--DPTRAAPLDHLVNFIV 289
YP L+G++ ++K A++LI +A+Q L + L+ L ++I+
Sbjct: 250 YPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYII 295
>sp|P57537|ISPA_BUCAI Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ispA PE=3 SV=1
Length = 282
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 150/266 (56%), Gaps = 22/266 (8%)
Query: 13 FFQVNE-YKALKAKQINEALDEAVPLPHPAILHEAMRYS-LPGGKRLMSTLCIASCEMIG 70
FF + E YK +++ L++ +P ++L +AM+YS G KRL S+L ++ ++
Sbjct: 3 FFHLYERYKHRINQKLFYTLNQ-LPFQKSSLL-KAMKYSVFSGSKRLRSSLIYSTGDVFK 60
Query: 71 GSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCL 130
+ + ++ AIE + + ++I DDLPC+DND+ RRGK S H +GE+T++LA AL L
Sbjct: 61 VNITTLDVISTAIEFIHSYSLIHDDLPCMDNDNFRRGKISCHVKYGESTSLLAGDALQSL 120
Query: 131 A--------MQHIAIIK----AKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRH 178
A M +++ +K ++ ++GS G+ GQ +D+ +E K+V+LSEL I+ +
Sbjct: 121 AFNILSNSFMPNVSNLKRIKMISELSYSIGSSGMCMGQNLDLEAEKKDVNLSELEIINLY 180
Query: 179 KTGKFIEASIVSGVIIGGGNEEE--IERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTG 236
KT F+ S V V N + + + F +G+A+Q+ +DI+D + KT
Sbjct: 181 KTS-FLMRSAVRLVYFSSNNFSKSILSILDLFSISIGLAFQIQDDILDF---KKDSVKTD 236
Query: 237 RDMMRDKATYPKLVGIDGSKKHAKEL 262
+ K TYP ++G+D S+K K+L
Sbjct: 237 NKKIIKKHTYPLIIGLDESRKKIKQL 262
>sp|Q8K9A0|ISPA_BUCAP Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ispA PE=3 SV=1
Length = 294
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 143/257 (55%), Gaps = 19/257 (7%)
Query: 26 QINEALDEAVP-LP-HPAILHEAMRYS-LPGGKRLMSTLCIASCEMIGGSQSVAMSMACA 82
+IN+ L E + LP ++L AM+YS L GGKRL + L A+ E + + ++ A
Sbjct: 13 RINKKLFEIIQELPFQDSVLFRAMKYSTLSGGKRLRACLIYATGETFQVNIAALDVISAA 72
Query: 83 IELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIA------ 136
+EL+ + ++I DDLPC+DND RRGK S H +GE A+LA AL LA ++
Sbjct: 73 VELVHSYSLIHDDLPCIDNDYFRRGKISCHIKYGENFALLAGDALQGLAFNILSNSNMPG 132
Query: 137 ---IIKAKNI---NSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVS 190
I+ K I ++A+G G+ GQ++D+ E K++++SEL I+ +KT I SI
Sbjct: 133 VHDSIRLKMIAEFSNAIGYSGMCIGQMLDLEKERKKINISELEKINLYKTAFLIRCSIRL 192
Query: 191 GVIIGGGNEEEIERMRN-FGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKL 249
+E+ + + F +G+A+Q+ +DI+D+ + E + R+ + K TYP L
Sbjct: 193 AYFASNNFSKEVLFILDKFSVSIGLAFQIQDDILDLKNDIKKLE-SKRN--KTKNTYPLL 249
Query: 250 VGIDGSKKHAKELIAEA 266
+G+ SK KEL EA
Sbjct: 250 IGLKKSKIKIKELYKEA 266
>sp|P55539|ISPA_RHISN Probable farnesyl diphosphate synthase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a02750 PE=3 SV=1
Length = 332
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 125/248 (50%), Gaps = 15/248 (6%)
Query: 43 LHEAMRY-SLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDN 101
L AMRY +L GGKR + LC+A+ + + + AIE++ ++ DDLP +D+
Sbjct: 62 LMAAMRYATLHGGKRTRALLCLAAGALADTPAHILDDVGAAIEMMHACTLVHDDLPAMDD 121
Query: 102 DDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKA---------KNINSAVGSEGI 152
D LRRG P+ H FGEATAIL AL A +A + A + + AV +EG
Sbjct: 122 DVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLDAPGDNRIALVRELAQAVSAEGA 181
Query: 153 AAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIG----GGNEEEIERMRNF 208
A GQ MD++ GK V L + +HR K G + AS+ G + + + ++
Sbjct: 182 AGGQAMDLSLVGKHVELDRIVAMHRMKCGALVRASVRMGALCAIAEDAADATLYCALDHY 241
Query: 209 GKYVGMAYQLWNDIVDVIGSPEMREKT-GRDMMRDKATYPKLVGIDGSKKHAKELIAEAK 267
G+A Q+ +DI+D KT G+D K T ++G+ +++ A +L+ EA
Sbjct: 242 SACFGLALQVVDDILDATADTATLGKTPGKDAAAQKPTCASIMGLQAARQFALDLLCEAG 301
Query: 268 QELAYFDP 275
+ +A P
Sbjct: 302 EAIAPLGP 309
>sp|Q45220|ISPA_BRAJA Probable farnesyl diphosphate synthase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=fppS PE=3 SV=1
Length = 332
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 133/259 (51%), Gaps = 16/259 (6%)
Query: 43 LHEAMRY-SLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDN 101
L AMRY +L GGKR + LC+A+ + + + AIE++ ++ DDLP +D+
Sbjct: 62 LMAAMRYATLHGGKRTRALLCLAAGALADTPAHMLDDVGAAIEMMHACTLVHDDLPAMDD 121
Query: 102 DDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKA---------KNINSAVGSEGI 152
D LRRG P+ H FGEATAIL AL A +A + A + + AV +EG
Sbjct: 122 DVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLNAPGDSPIALVRELAQAVSAEGA 181
Query: 153 AAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVI----IGGGNEEEIERMRNF 208
A GQ +D++ GK V L + +HR K+G + AS+ G + + + + ++
Sbjct: 182 AGGQAIDLSLVGKHVELDRIVAMHRMKSGALVRASVRMGALCAVGVNAAHAALYCALDHY 241
Query: 209 GKYVGMAYQLWNDIVDVIGSPEMREKT-GRDMMRDKATYPKLVGIDGSKKHAKELIAEAK 267
G+A Q+ +DI+DV KT G+D K T ++G+ +++ A +L+ +A
Sbjct: 242 SACFGLALQVIDDILDVTADTAALGKTPGKDAAAQKPTCASIMGLQEARQFALDLLRDAG 301
Query: 268 QELAYFDPTRAAPLDHLVN 286
+ +A P RA L L+
Sbjct: 302 EAIAPLGP-RAERLAQLIQ 319
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 140/292 (47%), Gaps = 46/292 (15%)
Query: 43 LHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDN 101
L+ A ++ L GGKR+ L + + + + A A+EL+ +I DD+ +DN
Sbjct: 35 LYNASKHLLFAGGKRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI--MDN 92
Query: 102 DDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSAV------GSEGIAAG 155
DD RRGKP+ H V+GE AILA L+ A + ++ IK V + G
Sbjct: 93 DDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAVSRIKDNKKAHEVLKILSKACVEVCEG 152
Query: 156 QIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMA 215
Q MD+ E ++ E + R KTG +EAS+ G ++ NEEE E ++ + K +G+
Sbjct: 153 QAMDMEFENYYPTMEEYLDMIRKKTGALLEASVGIGAVMADCNEEEREALKEYAKRIGLT 212
Query: 216 YQLWNDIVDVIG-SPEMREKTGRDMMRDKATY--------------PKLVGIDGSK---- 256
+Q+ +D++D+IG ++ + G D+ K T +L+ I G+K
Sbjct: 213 FQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHALKTLDEDKKKRLLEILGNKNVKD 272
Query: 257 --------------KHAKELIA----EAKQELAYFDPTRAAPLDHLVNFIVS 290
++AKEL+ EAK+ L F+ R L+ L +FI+S
Sbjct: 273 EEIKEAIEILKPSIEYAKELMKQKTEEAKEYLKIFNKDRRKVLEDLADFIMS 324
>sp|O66952|ISPA_AQUAE Farnesyl diphosphate synthase OS=Aquifex aeolicus (strain VF5)
GN=ispA PE=3 SV=1
Length = 262
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 129/265 (48%), Gaps = 36/265 (13%)
Query: 25 KQINEALDEAVPLPHPAILHEAMRYS-LPGGKRLMSTLCIASCEMIGGSQSVAMSMACAI 83
++I + L+E + P L EAM+Y L GKR+ +A +GG++ A+++ I
Sbjct: 9 EKIEKRLNEILKPEGPEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAITVGSGI 68
Query: 84 ELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQAL--------------HC 129
EL+ ++I DDLPC+DND RRG P+ H FGEA A+LA AL
Sbjct: 69 ELIHNYSLIHDDLPCMDNDVWRRGLPTCHIKFGEAMALLAGDALLTYTFEVLSQRENYKT 128
Query: 130 LAMQHIAIIKAKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIV 189
L+ + I I K I GS G+ GQ++DI +L + KTG EA +
Sbjct: 129 LSCEEILEIN-KIIAQKAGSNGMVGGQVLDIK------GYEDLYEVSVKKTGALFEACFM 181
Query: 190 SGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRD-KATYPK 248
G ++ E+++ M + G+ VG+ +Q+ +D +D G EK G + + K Y +
Sbjct: 182 CGAVV-AKRREKLKEMESIGRKVGLLFQMVDDYLDKDG---FYEKLGECLKEEIKKLYEE 237
Query: 249 LVGIDGSKKHAKELIAEAKQELAYF 273
L KE+ E+ QEL Y
Sbjct: 238 L--------KEKEIFKES-QELRYL 253
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 28/252 (11%)
Query: 29 EALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGS-QSVAMSMACAIELL 86
EAL E+ PL L A+ Y + PGG R+ T+ ++ G +V + A A+EL+
Sbjct: 18 EALGESPPL-----LAAALPYGVFPGGARIRPTILVSVALACGDDCPAVTDAAAVALELM 72
Query: 87 VTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSA 146
+++ DDLP DN D+RRGKPS HK + E A+LA +L + +A + A N + A
Sbjct: 73 HCASLVHDDLPAFDNADIRRGKPSLHKAYNEPLAVLAGDSLLIRGFEVLADVGAVNPDRA 132
Query: 147 V-----------GSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIG 195
+ GI AGQ + S+ +L H+ KTG A+ G I
Sbjct: 133 LKLISKLGQLSGARGGICAGQAWESESK------VDLAAYHQAKTGALFIAATQMGAIAA 186
Query: 196 GGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPE-MREKTGRDMMRDKATYPKLVGIDG 254
G E E + G +G A+Q+ +D+ D + S E M + G+D+ ++ K +GI+G
Sbjct: 187 G---YEAEPWFDLGMRIGSAFQIADDLKDALMSAEAMGKPAGQDIANERPNAVKTMGIEG 243
Query: 255 SKKHAKELIAEA 266
++KH ++++A A
Sbjct: 244 ARKHLQDVLAGA 255
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 140/259 (54%), Gaps = 23/259 (8%)
Query: 16 VNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSV 75
+ +Y + K+I E + + P +L + GGK++ +L + SCE +GG+
Sbjct: 8 LRKYSEVADKRIMECISDITP---DTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPED 64
Query: 76 AMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHI 135
A +A AIEL+ T ++I DD+ +D+D++RRG+PS H ++GE AILA L A +
Sbjct: 65 AAGVAAAIELIHTFSLIHDDI--MDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFE-- 120
Query: 136 AIIK-----------AKNINSAVGSEGIAAGQIMDINSEGK-EVSLSELNFIHRHKTGKF 183
A+I+ A ++S V I GQ +D+ E + +V+ E + KT
Sbjct: 121 AVIRNGDSERVKDALAVVVDSCVK---ICEGQALDMGFEERLDVTEDEYMEMIYKKTAAL 177
Query: 184 IEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPE-MREKTGRDMMRD 242
I A+ +G I+GG +E E+E + ++GK++G+A+Q+ +D +DV+ E + + G D+
Sbjct: 178 IAAATKAGAIMGGASEREVEALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEG 237
Query: 243 KATYPKLVGIDGSKKHAKE 261
K T + ++ + + +E
Sbjct: 238 KMTLMVVKALEEASEEDRE 256
>sp|P22873|CRTE_ESCVU Geranylgeranyl pyrophosphate synthase OS=Escherichia vulneris
GN=crtE PE=3 SV=1
Length = 307
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 21/249 (8%)
Query: 42 ILHEAMRYS-LPGGKRLMSTLCIASCEMI--GGSQSVAMSMACAIELLVTMAVIQDDLPC 98
I+ AMR + GKR+ L + + + GS + +ACA+EL T +++ DD+PC
Sbjct: 38 IVSLAMREGVMAPGKRIRPLLMLLAARDLRYQGSMPTLLDLACAVELTHTASLMLDDMPC 97
Query: 99 LDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAII-------KAKNIN---SAVG 148
+DN +LRRG+P+ HK FGE+ AILA L A IA +A+ +N +AVG
Sbjct: 98 MDNAELRRGQPTTHKKFGESVAILASVGLLSKAFGLIAATGDLPGERRAQAVNELSTAVG 157
Query: 149 SEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNF 208
+G+ GQ D+N + + + + KTG A + I + E + F
Sbjct: 158 VQGLVLGQFRDLNDAALDRTPDAILSTNHLKTGILFSAMLQIVAIASASSPSTRETLHAF 217
Query: 209 GKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRD--KATYPKLVGIDGSKKHAKELIAEA 266
G A+QL +D+ D PE TG+D +D K+T +G D +++ +E I A
Sbjct: 218 ALDFGQAFQLLDDLRD--DHPE----TGKDRNKDAGKSTLVNRLGADAARQKLREHIDSA 271
Query: 267 KQELAYFDP 275
+ L + P
Sbjct: 272 DKHLTFACP 280
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 153/298 (51%), Gaps = 40/298 (13%)
Query: 16 VNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSV 75
+ +Y + ++I E++ + P +L + GGK++ +L + S E +GG
Sbjct: 8 LRKYSEMADERIRESISDITP---ETLLRASEHLITAGGKKIRPSLALLSSEAVGGDPGD 64
Query: 76 AMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHI 135
A +A AIEL+ T ++I DD+ +D+D++RRG+P+ H ++GE AILA L A +
Sbjct: 65 AAGVAAAIELIHTFSLIHDDI--MDDDEIRRGEPAVHVLWGEPMAILAGDVLFSKAFE-- 120
Query: 136 AIIKAKNINSAVGSEGIAA----------GQIMDINSEGK-EVSLSELNFIHRHKTGKFI 184
A+I+ N +S + E +A GQ +D+ E + +V+ E + KT I
Sbjct: 121 AVIR--NGDSEMVKEALAVVVDSCVKICEGQALDMGFEERLDVTEEEYMEMIYKKTAALI 178
Query: 185 EASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPE-MREKTGRDMMRDK 243
A+ +G I+GGG+ +EI + ++G+ +G+A+Q+ +D +DV+ E + + G D+ K
Sbjct: 179 AAATKAGAIMGGGSPQEIAALEDYGRCIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGK 238
Query: 244 ATY--------------PKLVGIDGSKKHAKELIAEAKQELAYFDPTR---AAPLDHL 284
T +L+ I GS ++L+AEA + + T A LDH+
Sbjct: 239 MTLMVVKALERASEKDRERLISILGSGD--EKLVAEAIEIFERYGATEYAHAVALDHV 294
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 130/261 (49%), Gaps = 22/261 (8%)
Query: 27 INEALDEAVPLP-HPAILHEAMRY-SLPGGKRLMSTLCIASCEMIGG--SQSVAMSMACA 82
I+ LD+ +P+ ++ AMR +L GKR+ L + + +G S + +ACA
Sbjct: 23 IDRRLDQLLPVEGERDVVGAAMREGALAPGKRIRPMLLLLTARDLGCAVSHDGLLDLACA 82
Query: 83 IELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIK--- 139
+E++ ++I DD+PC+D+ LRRG+P+ H +GE AILA AL A IA
Sbjct: 83 VEMVHAASLILDDMPCMDDAKLRRGRPTIHSHYGEHVAILAAVALLSKAFGVIADADGLT 142
Query: 140 --AKN-----INSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGV 192
AKN +++A+G +G+ GQ D++ K S + + KT AS+
Sbjct: 143 PLAKNRAVSELSNAIGMQGLVQGQFKDLSEGDKPRSAEAILMTNHFKTSTLFCASMQMAS 202
Query: 193 IIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRD--KATYPKLV 250
I+ + E + + F +G A+QL +D+ D + TG+D +D K+T L+
Sbjct: 203 IVANASSEARDCLHRFSLDLGQAFQLLDDLTDGM------TDTGKDSNQDAGKSTLVNLL 256
Query: 251 GIDGSKKHAKELIAEAKQELA 271
G ++ ++ + A + L+
Sbjct: 257 GPRAVEERLRQHLQLASEHLS 277
>sp|P54976|CRTE_RHOS4 Geranylgeranyl pyrophosphate synthase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=crtE PE=3 SV=3
Length = 288
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 11/235 (4%)
Query: 40 PAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQ-SVAMSMACAIELLVTMAVIQDDLP 97
P+ L A+ Y++ PGG R+ TL ++ G + +++ + A A+EL+ +++ DDLP
Sbjct: 24 PSKLATALDYAVTPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDDLP 83
Query: 98 CLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSA---VGSEGIAA 154
C D+ ++RRGKP+ H+ + E AIL +L + + +A A A V + +
Sbjct: 84 CFDDAEIRRGKPTVHRAYSEPLAILTGDSLIVMGFEVLARAAADQPQRALQLVTALAVRT 143
Query: 155 GQIMDINSEGKEVSLSELNF--IHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYV 212
G M I + S S++N HR KTG A+ G I G E E G +
Sbjct: 144 GMPMGICAGQGWESESQINLSAYHRAKTGALFIAATQMGAIAAG---YEAEPWEELGARI 200
Query: 213 GMAYQLWNDIVDVIGSPE-MREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEA 266
G A+Q+ +D+ D + E + + G+D + + + G++G+ K K+++ A
Sbjct: 201 GEAFQVADDLRDALCDAETLGKPAGQDEIHARPNAVREYGVEGAAKRLKDILGGA 255
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 150/286 (52%), Gaps = 23/286 (8%)
Query: 23 KAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMAC 81
++ ++ A+DE +P+ P L++A RY + GGKRL + I + E +G + + A
Sbjct: 13 RSSHVDAAIDELLPVTRPEELYKASRYLVDAGGKRLRPAVLILAAEAVGSNLRSVLPAAV 72
Query: 82 AIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIA----- 136
A+EL+ +I DD+ D+ +RRG P+ H +GEA AILA L+ A + ++
Sbjct: 73 AVELVHNFTLIHDDIMDRDD--IRRGMPAVHVKWGEAGAILAGDTLYSKAFEILSKVENE 130
Query: 137 ---IIKAKNINSAVGSEGIAAGQIMDINSEG-KEVSLSELNFIHRHKTGKFIEASIVSGV 192
++K ++ S +E I GQ +D++ E K+V+ SE + KT A+ G
Sbjct: 131 PVRVLKCMDVLSKTCTE-ICEGQWLDMDFETRKKVTESEYLEMVEKKTSVLYAAAAKIGA 189
Query: 193 IIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-GRDMMRDKATYPKLVG 251
++GG ++E E + +G+ +G+ +Q+++D++D+ E+ K G D+M K T L+
Sbjct: 190 LLGGASDEVAEALSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYT---LIV 246
Query: 252 IDGSKKHAKELI---AEA---KQELAYFDPTRAAPLDHLVNFIVSF 291
I+ +K K I EA + E A T LD++ N +S+
Sbjct: 247 INAFEKGVKLDIFGKGEATLEETEAAVRTLTECGSLDYVKNLAISY 292
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 103/186 (55%), Gaps = 14/186 (7%)
Query: 53 GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNH 112
GGKRL + ++S ++IGG + A A A+E+L ++ DD+ +DND LRRG P+ H
Sbjct: 43 GGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI--MDNDGLRRGLPTVH 100
Query: 113 KVFGEATAILACQALHCLAMQHI-AIIKAKNINSAVGS--------EGIAAGQIMDINSE 163
+GE AILA LH A + + +K + N+ + E I+ GQ MD++ E
Sbjct: 101 VKWGEPMAILAGDYLHAKAFEALNEALKGLDGNTFYKAFSIFITSIEIISEGQAMDMSFE 160
Query: 164 GKEVSLSELNFIH--RHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWND 221
+ + ++E +I + KT S G II N++ ++++ +G +G+++Q+ +D
Sbjct: 161 NR-LDVTEEEYIQMIKGKTAMLFSCSAALGGIINKANDDVVKKLTEYGLNLGISFQIVDD 219
Query: 222 IVDVIG 227
I+ +IG
Sbjct: 220 ILGIIG 225
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 27/290 (9%)
Query: 27 INEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELL 86
+N+ + + P + + GGKRL + S ++ GG + A AIE+L
Sbjct: 15 VNDIIKSYISGDVPKLYEASYHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAAIEVL 74
Query: 87 VTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHI----------A 136
T ++ DD+ +D D++RRG P+ H +G AILA LH A Q +
Sbjct: 75 HTFTLVHDDI--MDQDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQLLTQALRGLPSET 132
Query: 137 IIKAKNINSAVGSEGIAAGQIMDINSEGKEVSLSE---LNFIHRHKTGKFIEASIVSGVI 193
IIKA +I + I+ GQ +D+ E + + + E L+ I R KT AS G +
Sbjct: 133 IIKAFDIFTR-SIIIISEGQAVDMEFEDR-IDIKEQEYLDMISR-KTAALFSASSSIGAL 189
Query: 194 IGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGS-PEMREKTGRDMMRDKATYPKLVGI 252
I G N+ ++ M +FG +G+A+Q+ +DI+ + E+ + D+ K T + +
Sbjct: 190 IAGANDNDVRLMSDFGTNLGIAFQIVDDILGLTADEKELGKPVFSDIREGKKTILVIKTL 249
Query: 253 DGSKKHAKELIAEA-------KQEL-AYFDPTRAAPLDHLVNFIVSFGNN 294
+ K+ K+++ +A K+EL + D + LD+ N + N
Sbjct: 250 ELCKEDEKKIVLKALGNKSASKEELMSSADIIKKYSLDYAYNLAEKYYKN 299
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 118/225 (52%), Gaps = 14/225 (6%)
Query: 53 GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNH 112
GGKR+ + + + +G S +++ A +E + T +++ DD+ +D D+RRG+ + +
Sbjct: 49 GGKRIRPLIAVLAARSLGFEGSNSITCATFVEFIHTASLLHDDV--VDESDMRRGRATAN 106
Query: 113 KVFGEATAILACQALHCLAMQHIAIIKAKNINS--AVGSEGIAAG---QIMDINSEGKEV 167
FG A ++L ++ A Q +A +++ I S A + +A G Q+M++N +
Sbjct: 107 AEFGNAASVLVGDFIYTRAFQLVAQLESLKILSIMADATNVLAEGEVQQLMNVN----DP 162
Query: 168 SLSELNFIH--RHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDV 225
SE N++ KT + E + + I+ GG E + + ++++G+Y+G A+QL +D++D
Sbjct: 163 ETSEANYMRVIYSKTARLFEVAGQAAAIVAGGTEAQEKALQDYGRYLGTAFQLVDDVLDY 222
Query: 226 IGSPE-MREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQE 269
+ + + + G D+ K T P L + LI EA ++
Sbjct: 223 SANTQALGKNVGDDLAEGKPTLPLLHAMRHGNAQQAALIREAIEQ 267
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 16/207 (7%)
Query: 53 GGKRLMSTLCIASCEMIGG--SQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPS 110
GGKRL + + + M+GG +++ A+ +A +IE T ++I DD+ +D D++RRG P+
Sbjct: 29 GGKRLRPLITLLTARMLGGLEAEARAIPLAASIETAHTFSLIHDDI--MDRDEVRRGVPT 86
Query: 111 NHKVFGEATAILACQALHCLAMQHIAIIKAKNINS-------AVGSEG---IAAGQIMD- 159
H V+G+ AILA LH A + IA + ++ V SE I+ GQ D
Sbjct: 87 THVVYGDDWAILAGDTLHAAAFKMIADSREWGMSHEQAYRAFKVLSEAAIQISRGQAYDM 146
Query: 160 INSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLW 219
+ E +V +++ + R KTG IEA+ G + G E + M G G+A+Q+
Sbjct: 147 LFEETWDVDVADYLNMVRLKTGALIEAAARIGAVAAGAGSEIEKMMGEVGMNAGIAFQIR 206
Query: 220 NDIVDVIGSPEMREK-TGRDMMRDKAT 245
+DI+ VIG P++ K D+ R K T
Sbjct: 207 DDILGVIGDPKVTGKPVYNDLRRGKKT 233
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 28/245 (11%)
Query: 27 INEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIG--------------- 70
+NEA+ E +P+ P L+ A RY L GGKRL T+ + + E +
Sbjct: 18 VNEAVSEQLPVQKPERLYSASRYLLDAGGKRLRPTILLLAAESLADVEPLSADYRQFPSL 77
Query: 71 -GSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHC 129
G + +S A +IE++ + +I DD+ D+ LRRG P+ H+ + TAILA L+
Sbjct: 78 PGDEVDVLSAAVSIEVIQSFTLIHDDIMDDDD--LRRGVPAVHREYDLETAILAGDTLYS 135
Query: 130 LAMQHIAIIKAKNINS-------AVGSEGIAAGQIMDINSEGK-EVSLSELNFIHRHKTG 181
A +++ A S A I GQ +D++ E + +V+ E + KT
Sbjct: 136 KAFEYMLDTGAPAERSVEALDELATTCTEICEGQALDVDFENRSDVTTEEYLEMVEFKTA 195
Query: 182 KFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIG-SPEMREKTGRDMM 240
A+ I+ G ++E +E + +G +G A+Q+ +D++D+ S E+ ++ G D++
Sbjct: 196 VLYAAAASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTAPSDELGKQRGSDLV 255
Query: 241 RDKAT 245
+K T
Sbjct: 256 ENKRT 260
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 16/206 (7%)
Query: 53 GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNH 112
GGKR+ + + + +G + +++A IE + T ++ DD+ +D D+RRGK + +
Sbjct: 43 GGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDV--VDESDMRRGKATAN 100
Query: 113 KVFGEATAILACQALHCLAMQHIAIIKAKNINSAVGSEG---IAAG---QIMDINSEGKE 166
FG A ++L ++ A Q + + + + V SE IA G Q+M++N +
Sbjct: 101 AAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLE-VMSEAVNVIAEGEVLQLMNVN----D 155
Query: 167 VSLSELNFIH--RHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVD 224
++E N++ KT + EA+ I+ G EE + ++++G+Y+G A+QL +D++D
Sbjct: 156 PDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLD 215
Query: 225 VIGSPE-MREKTGRDMMRDKATYPKL 249
E + + G D+ K T P L
Sbjct: 216 YNADGEQLGKNVGDDLNEGKPTLPLL 241
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 16/206 (7%)
Query: 53 GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNH 112
GGKR+ + + + +G + +++A IE + T ++ DD+ +D D+RRGK + +
Sbjct: 43 GGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDV--VDESDMRRGKATAN 100
Query: 113 KVFGEATAILACQALHCLAMQHIAIIKAKNINSAVGSEG---IAAG---QIMDINSEGKE 166
FG A ++L ++ A Q + + + + V SE IA G Q+M++N +
Sbjct: 101 AAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLE-VMSEAVNVIAEGEVLQLMNVN----D 155
Query: 167 VSLSELNFIH--RHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVD 224
++E N++ KT + EA+ I+ G EE + ++++G+Y+G A+QL +D++D
Sbjct: 156 PDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLD 215
Query: 225 VIGSPE-MREKTGRDMMRDKATYPKL 249
E + + G D+ K T P L
Sbjct: 216 YNADGEQLGKNVGDDLNEGKPTLPLL 241
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 106/211 (50%), Gaps = 11/211 (5%)
Query: 54 GKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHK 113
GK + L + E G A+ A ++EL+ +++ DDL +D D+ RR +P+
Sbjct: 72 GKAIRPALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDL--MDRDEHRRHRPTVWA 129
Query: 114 VFGEATAILACQALHCLAMQHIAIIKAKNINSAV-----GSEGIAAGQIMDINSEGK-EV 167
++G+A A+LA A+ LA + + + ++ +A+ + + GQ D E + +V
Sbjct: 130 LWGDAMALLAGDAMLSLAHEVLLDCDSPHVGAALRAISEATRELIRGQAADTAFESRTDV 189
Query: 168 SLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIG 227
+L E + KT + AS G ++ G E + +G+++G+A+QL +D++ + G
Sbjct: 190 ALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDDLLGIWG 249
Query: 228 SPEMREKTGRDMMRDKATYPKLVGIDGSKKH 258
PE+ TG+ + D + K + + + H
Sbjct: 250 RPEI---TGKPVYSDLRSRKKTLPVTWTVAH 277
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 106/211 (50%), Gaps = 11/211 (5%)
Query: 54 GKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHK 113
GK + L + E G A+ A ++EL+ +++ DDL +D D+ RR +P+
Sbjct: 72 GKAIRPALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDL--MDRDEHRRHRPTVWA 129
Query: 114 VFGEATAILACQALHCLAMQHIAIIKAKNINSAV-----GSEGIAAGQIMDINSEGK-EV 167
++G+A A+LA A+ LA + + + ++ +A+ + + GQ D E + +V
Sbjct: 130 LWGDAMALLAGDAMLSLAHEVLLDCDSPHVGAALRAISEATRELIRGQAADTAFESRTDV 189
Query: 168 SLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIG 227
+L E + KT + AS G ++ G E + +G+++G+A+QL +D++ + G
Sbjct: 190 ALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDDLLGIWG 249
Query: 228 SPEMREKTGRDMMRDKATYPKLVGIDGSKKH 258
PE+ TG+ + D + K + + + H
Sbjct: 250 RPEI---TGKPVYSDLRSRKKTLPVTWTVAH 277
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 22/251 (8%)
Query: 18 EYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCI----ASCEMIGGSQ 73
E A+ + +N+ L V +P ++ A + GGKR+ L A+ E+ G +
Sbjct: 89 ELVAVDLQTLNDNLLSIVGAENPVLISAAEQIFGAGGKRMRPGLVFLVSHATAELAGLKE 148
Query: 74 SVA--MSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQA 126
+A IE++ T ++I DD+ LD D+RRGK + H++FG A+LA QA
Sbjct: 149 LTTEHRRLAEIIEMIHTASLIHDDV--LDESDMRRGKETVHELFGTRVAVLAGDFMFAQA 206
Query: 127 LHCLA-MQHIAIIK--AKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKF 183
LA ++++ +IK ++ I E A + D +++ E L +KT
Sbjct: 207 SWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDTKLDEYLLKSF-----YKTASL 261
Query: 184 IEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRD 242
+ AS I + E+M FGK +G+++Q+ +DI+D S E K G D+ +
Sbjct: 262 VAASTKGAAIFSRVEPDVTEQMYEFGKNLGLSFQIVDDILDFTQSTEQLGKPAGSDLAKG 321
Query: 243 KATYPKLVGID 253
T P + ++
Sbjct: 322 NLTAPVIFALE 332
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 18/231 (7%)
Query: 53 GGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNH 112
GGKR+ + + E+ GS S +++ A A+E++ + ++I DDL LD +RR PS
Sbjct: 49 GGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDL--LDQGLVRRNLPSAP 106
Query: 113 KVFGEATAILACQALHCLAMQHIAIIKAKNINSAVGSEGI--AAGQIMDINSEGKEVSLS 170
+ FG + A+L L ++ I+ K I G G+ A G+++D+ E + +
Sbjct: 107 EKFGPSGALLCGDYLIAKSIAFISPYGEKVIQD-FGKAGMDMAEGEVLDLKLEDESFGEN 165
Query: 171 ELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPE 230
+ KT S G GG EE ER +FG +G AYQ+ +DI++ + E
Sbjct: 166 DYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE 225
Query: 231 MREKTGRDMMRDKATYPKLVGIDGSKKHA--------KELIAEAKQELAYF 273
G++ T P + SK+ A K +A AK+ L F
Sbjct: 226 -----GKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLETF 271
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 14/219 (6%)
Query: 53 GGKRLMSTLCIASCEMIGGSQ-SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSN 111
GGKR+ +C+ + G + A +A IE+L T ++ DD+ +D LRRG+P+
Sbjct: 46 GGKRMRPIMCLLAAYACGETNLKHAQKLAAIIEMLHTATLVHDDV--VDESGLRRGRPTA 103
Query: 112 HKVFGEATAILACQALHCLAMQHIA----IIKAKNINSAVGSEGIAAGQIMDINSEGKEV 167
+ + TA+L L A + +I K+ ++ G+ IA G+++ + ++ +
Sbjct: 104 NATWNNQTAVLVGDFLIARAFDLLVDLDNMILLKDFST--GTCEIAEGEVLQLQAQHQPD 161
Query: 168 SLSE--LNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDV 225
+ + L IH KT + E + G I G E E +R F + G A+Q+ +DI+D
Sbjct: 162 TTEDIYLQIIH-GKTSRLFELA-TEGAAILAGKPEYREPLRRFAGHFGNAFQIIDDILDY 219
Query: 226 IGSPEMREKT-GRDMMRDKATYPKLVGIDGSKKHAKELI 263
+ K G D+M K T P + + ++ ++LI
Sbjct: 220 TSDADTLGKNIGDDLMEGKPTLPLIAAMQNTQGEQRDLI 258
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 116/242 (47%), Gaps = 22/242 (9%)
Query: 26 QINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCI----ASCEMIGGSQSVA--MSM 79
++N L V +P ++ A + GGKRL L A+ E+ G + +
Sbjct: 63 KLNNNLKSLVGAENPVLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRL 122
Query: 80 ACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILA-----CQALHCLA-MQ 133
A IE++ T ++I DD+ +D+ +RRGK + H+++G A+LA Q+ LA ++
Sbjct: 123 AEIIEMIHTASLIHDDV--IDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLE 180
Query: 134 HIAIIK--AKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSG 191
+I +IK ++ I E A + D + ++L + +KT I AS S
Sbjct: 181 NIEVIKLISQVIKDFASGEIKQASTLFDCD-----ITLDDYLLKSYYKTASLIAASTRSA 235
Query: 192 VIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKLV 250
I G + E+M +G+ +G+++Q+ +DI+D S E K G D+ + T P +
Sbjct: 236 AIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIF 295
Query: 251 GI 252
+
Sbjct: 296 AL 297
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 8/238 (3%)
Query: 27 INEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELL 86
+ E L+ AV + + A+ GGKR+ + + +A A+EL+
Sbjct: 17 VEEELERAVQSEYGPLGEAALHLLQAGGKRIRPVFVLLAARFGQYDLERMKHVAVALELI 76
Query: 87 VTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAII---KAKNI 143
+++ DD+ +D+ DLRRG+P+ + A+ L +++ +A + +A +
Sbjct: 77 HMASLVHDDV--IDDADLRRGRPTIKAKWSNRFAMYTGDYLFARSLERMAELGNPRAHQV 134
Query: 144 NSAVGSEGIAAGQIMDINSEGK-EVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEI 202
+ E + G+I I + + + L R KT I AS G + G E +
Sbjct: 135 LAKTIVE-VCRGEIEQIKDKYRFDQPLRTYLRRIRRKTALLIAASCQLGALAAGAPEPIV 193
Query: 203 ERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKLVGIDGSKKHA 259
+R+ FG YVGM++Q+ +DI+D G+ E K G D+++ T P L + + A
Sbjct: 194 KRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPAGSDLLQGNVTLPVLYALSDERVKA 251
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 12/239 (5%)
Query: 25 KQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCI----ASCEMIGGSQSVA--MS 78
+++N+ L V +P ++ A + GGKR+ L A+ E+ G +
Sbjct: 107 QRLNDNLLSIVGAENPVLISAAEQIFSAGGKRMRPGLVFLVSRATAELAGLKELTVEHRR 166
Query: 79 MACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAII 138
+ IE++ T ++I DD+ LD D+RRG+ + H++FG A+LA + A ++A +
Sbjct: 167 LGEIIEMIHTASLIHDDV--LDESDMRRGRETVHELFGTRVAVLAGDFMFAQASWYLANL 224
Query: 139 KAKNINSAVGS--EGIAAGQIMDINSEGK-EVSLSELNFIHRHKTGKFIEASIVSGVIIG 195
+ + + + A+G+I +S +V L + +KT + AS I
Sbjct: 225 ENLEVIKLISQVIKDFASGEIKQASSLFDCDVKLDDYMLKSYYKTASLVAASTKGAAIFS 284
Query: 196 GGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKLVGID 253
+ E+M FGK +G+++Q+ +DI+D S E K D+ + T P + ++
Sbjct: 285 KVESKVAEQMYQFGKNLGLSFQVVDDILDFTQSTEQLGKPAANDLAKGNITAPVIFALE 343
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,724,345
Number of Sequences: 539616
Number of extensions: 4506926
Number of successful extensions: 11253
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 11020
Number of HSP's gapped (non-prelim): 121
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)