Query 037594
Match_columns 295
No_of_seqs 200 out of 1292
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10581 geranyltranstransfera 100.0 8.9E-69 1.9E-73 496.0 7.4 280 14-293 1-299 (299)
2 COG0142 IspA Geranylgeranyl py 100.0 9E-65 2E-69 474.1 5.1 275 15-293 2-322 (322)
3 TIGR02748 GerC3_HepT heptapren 100.0 1.3E-63 2.8E-68 466.0 6.2 274 15-293 4-319 (319)
4 PRK10888 octaprenyl diphosphat 100.0 2.3E-63 5.1E-68 464.6 4.7 273 16-293 6-323 (323)
5 PLN02890 geranyl diphosphate s 100.0 5.7E-63 1.2E-67 472.9 5.9 273 16-293 84-422 (422)
6 TIGR02749 prenyl_cyano solanes 100.0 4.5E-63 9.7E-68 462.6 4.5 273 15-292 5-321 (322)
7 CHL00151 preA prenyl transfera 100.0 7E-63 1.5E-67 461.8 4.0 274 15-293 6-323 (323)
8 PLN02857 octaprenyl-diphosphat 100.0 1.5E-62 3.3E-67 470.1 5.0 277 12-293 93-416 (416)
9 KOG0776 Geranylgeranyl pyropho 100.0 1.7E-59 3.6E-64 436.7 6.5 276 14-291 65-384 (384)
10 cd00685 Trans_IPPS_HT Trans-Is 100.0 5.3E-58 1.2E-62 416.8 3.0 244 41-291 4-259 (259)
11 PF00348 polyprenyl_synt: Poly 100.0 8.4E-56 1.8E-60 402.7 -2.1 222 44-269 2-236 (260)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 1.3E-43 2.7E-48 316.9 3.5 227 57-291 1-236 (236)
13 KOG0711 Polyprenyl synthetase 100.0 1.3E-37 2.8E-42 281.0 8.1 218 41-262 38-277 (347)
14 KOG0777 Geranylgeranyl pyropho 100.0 4.9E-36 1.1E-40 260.0 3.6 225 41-273 21-289 (322)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.8 2.7E-21 5.8E-26 169.1 1.0 185 77-273 13-223 (243)
16 PF07307 HEPPP_synt_1: Heptapr 95.9 0.0072 1.6E-07 53.4 3.3 77 71-156 30-110 (212)
17 PLN02632 phytoene synthase 92.5 0.018 3.8E-07 54.5 -2.0 117 150-278 143-281 (334)
18 cd00683 Trans_IPPS_HH Trans-Is 89.8 0.029 6.2E-07 51.1 -3.5 111 150-277 96-228 (265)
19 TIGR03465 HpnD squalene syntha 87.4 0.1 2.2E-06 47.6 -1.5 109 150-276 88-218 (266)
20 TIGR01559 squal_synth farnesyl 87.0 0.42 9.1E-06 45.3 2.3 115 150-275 111-248 (336)
21 TIGR03464 HpnC squalene syntha 86.9 0.1 2.2E-06 47.7 -1.9 110 150-277 89-220 (266)
22 PF00494 SQS_PSY: Squalene/phy 71.7 0.4 8.6E-06 43.4 -3.3 110 150-275 94-227 (267)
23 PF06783 UPF0239: Uncharacteri 67.0 5.6 0.00012 30.0 2.6 23 198-220 14-36 (85)
24 PRK12884 ubiA prenyltransferas 65.0 2 4.3E-05 39.2 -0.1 163 76-259 39-204 (279)
25 PRK10581 geranyltranstransfera 51.3 28 0.00061 32.4 5.0 85 52-139 181-278 (299)
26 PRK13105 ubiA prenyltransferas 51.1 29 0.00064 32.0 5.1 59 76-135 162-220 (282)
27 PRK10888 octaprenyl diphosphat 48.5 10 0.00022 35.7 1.6 67 196-273 60-126 (323)
28 PRK13591 ubiA prenyltransferas 47.4 9.1 0.0002 35.9 1.1 37 215-261 194-230 (307)
29 PRK12872 ubiA prenyltransferas 46.2 9 0.00019 35.0 0.9 39 212-260 173-211 (285)
30 cd00685 Trans_IPPS_HT Trans-Is 44.0 30 0.00064 31.2 3.9 64 200-274 39-102 (259)
31 cd00687 Terpene_cyclase_nonpla 43.4 4.5 9.7E-05 37.1 -1.6 109 150-270 139-261 (303)
32 PLN00012 chlorophyll synthetas 41.5 15 0.00033 35.4 1.7 40 211-260 263-302 (375)
33 TIGR02748 GerC3_HepT heptapren 41.5 13 0.00029 34.8 1.3 67 196-273 59-125 (319)
34 COG0142 IspA Geranylgeranyl py 39.8 16 0.00034 34.4 1.5 60 204-274 70-129 (322)
35 PRK13105 ubiA prenyltransferas 39.6 14 0.0003 34.2 1.0 42 212-263 172-213 (282)
36 TIGR01476 chlor_syn_BchG bacte 38.3 20 0.00043 32.9 1.8 39 213-261 174-212 (283)
37 PRK06080 1,4-dihydroxy-2-napht 33.4 1E+02 0.0022 28.2 5.7 57 75-132 169-225 (293)
38 PLN02878 homogentisate phytylt 32.1 1E+02 0.0023 28.5 5.4 49 84-133 166-214 (280)
39 PF00348 polyprenyl_synt: Poly 30.3 12 0.00026 33.8 -1.0 68 196-274 29-96 (260)
40 TIGR02056 ChlG chlorophyll syn 29.1 99 0.0021 28.7 4.9 52 79-131 188-239 (306)
41 PRK12875 ubiA prenyltransferas 28.6 69 0.0015 29.5 3.7 38 84-122 175-212 (282)
42 TIGR02056 ChlG chlorophyll syn 28.0 32 0.00069 32.1 1.4 51 80-132 60-113 (306)
43 PRK07566 bacteriochlorophyll/c 26.1 1.1E+02 0.0025 28.4 4.8 56 76-132 191-246 (314)
44 PLN02878 homogentisate phytylt 25.9 42 0.00091 31.1 1.7 50 208-267 164-213 (280)
45 TIGR01476 chlor_syn_BchG bacte 25.9 1.7E+02 0.0036 26.7 5.7 49 79-128 166-214 (283)
46 CHL00151 preA prenyl transfera 25.7 81 0.0017 29.6 3.7 46 52-100 174-219 (323)
47 PRK12887 ubiA tocopherol phyty 25.2 1E+02 0.0022 28.8 4.2 53 79-132 187-239 (308)
48 COG1562 ERG9 Phytoene/squalene 25.1 88 0.0019 29.0 3.7 111 150-277 106-238 (288)
49 KOG0018 Structural maintenance 23.2 66 0.0014 35.1 2.7 51 13-63 995-1052(1141)
50 PRK12883 ubiA prenyltransferas 23.1 49 0.0011 30.1 1.7 53 79-133 42-97 (277)
51 PRK12875 ubiA prenyltransferas 22.2 45 0.00098 30.8 1.2 39 211-259 176-214 (282)
52 PRK12884 ubiA prenyltransferas 21.6 1.8E+02 0.0038 26.4 5.0 50 76-126 157-206 (279)
53 PRK12882 ubiA prenyltransferas 20.6 2.1E+02 0.0045 25.9 5.3 73 59-132 141-214 (276)
54 PF01040 UbiA: UbiA prenyltran 20.2 82 0.0018 27.6 2.5 178 60-256 9-192 (257)
No 1
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=8.9e-69 Score=496.00 Aligned_cols=280 Identities=35% Similarity=0.572 Sum_probs=252.5
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCC--ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLP--HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMA 90 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~as 90 (295)
|+|..+++...+.|++.|.+.+... .++.+.++++|++ .||||+||.|++++++++|++.+.+.++|++|||+|+||
T Consensus 1 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~aS 80 (299)
T PRK10581 1 MDFPQQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLGGKRLRPFLVYATGQMFGVSTNTLDAPAAAVECIHAYS 80 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4577888889999999999988642 2456999999999 999999999999999999998888999999999999999
Q ss_pred HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc------------ccccccccccccccee
Q 037594 91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN------------INSAVGSEGIAAGQIM 158 (295)
Q Consensus 91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~------------l~~~~~~~~~~~Gq~~ 158 (295)
||||||||||+|++|||+||+|.+||++.||++||+|++.||+++++...+. ++++.+...++.||.+
T Consensus 81 LiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~l 160 (299)
T PRK10581 81 LIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQAL 160 (299)
T ss_pred HHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhhHH
Confidence 9999999999999999999999999999999999999999999998753221 2333233679999999
Q ss_pred cccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCH-HHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hh
Q 037594 159 DINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNE-EEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TG 236 (295)
Q Consensus 159 dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~-~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~ 236 (295)
|+.+....+++++|.+|+.+|||+||++||.+|++++|+++ +.++.+++||.++|+||||+||++|++++++.+|| .+
T Consensus 161 d~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g 240 (299)
T PRK10581 161 DLEAEGKQVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQG 240 (299)
T ss_pred HHhccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcc
Confidence 99887655788999999999999999999999999999864 56889999999999999999999999999999999 99
Q ss_pred hhhhccccCCCceeeccCchhhHHHHHHHHHhhccccCCC-C-CCchhhhhhhhhccCC
Q 037594 237 RDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPT-R-AAPLDHLVNFIVSFGN 293 (295)
Q Consensus 237 ~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~-~-~~~L~~l~~~~~~R~~ 293 (295)
+|+++||+|||+++++++|++.+++|.++|++.|..+|+. . ++.|.++++|+++|.+
T Consensus 241 ~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T PRK10581 241 ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLAAQSLDTSALEALANYIIQRDK 299 (299)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCchhHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999643 3 5789999999999975
No 2
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=9e-65 Score=474.06 Aligned_cols=275 Identities=36% Similarity=0.560 Sum_probs=252.8
Q ss_pred chhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhh----HHHHHHHHHHHHHHH
Q 037594 15 QVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQS----VAMSMACAIELLVTM 89 (295)
Q Consensus 15 ~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~----~~~~~A~avEliH~a 89 (295)
.+...+.+..+.|++.|.+.++...|+.+.++++|.+ .||||+||.+++++++++|.+.+ .++++|++|||||++
T Consensus 2 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~l~~a~~~~~~aGGKrlRP~l~l~~~~~~~~~~~~~~~~~~~~aaavEliH~~ 81 (322)
T COG0142 2 DLLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLAGGKRLRPLLVLLAAEALGIDLETGGNDALDLAAAIELIHTA 81 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCccHhHHHHHHHHHHcCCCcccchhhHHHHHHHHHHHHHH
Confidence 3566788899999999999998445678999999999 89999999999999999984433 679999999999999
Q ss_pred HHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhc--cc----cccccccccccccceecccCC
Q 037594 90 AVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKA--KN----INSAVGSEGIAAGQIMDINSE 163 (295)
Q Consensus 90 sLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~--~~----l~~~~~~~~~~~Gq~~dl~~~ 163 (295)
||||||| ||+|++|||+||+|.+||+.+||++||+|++.||+++++... .. ++..+ ..|+.||.+|+.+.
T Consensus 82 SLiHDDv--mD~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~ 157 (322)
T COG0142 82 SLIHDDL--MDDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEAIKALAEAI--NGLCGGQALDLAFE 157 (322)
T ss_pred HHHHhhc--ccCCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH--HHHHHhHHHHHHcc
Confidence 9999999 999999999999999999999999999999999999999754 22 56666 89999999999998
Q ss_pred CceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhcc
Q 037594 164 GKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRD 242 (295)
Q Consensus 164 ~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~g 242 (295)
.+.+++++|.+|+++|||+||+++|.+|+++++++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++|
T Consensus 158 ~~~~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~g 237 (322)
T COG0142 158 NKPVTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEG 237 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcC
Confidence 77689999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccCCCceeeccCchh---------------------------------hHHHHHHHHHhhccccCC-CCCCchhhhhhhh
Q 037594 243 KATYPKLVGIDGSKK---------------------------------HAKELIAEAKQELAYFDP-TRAAPLDHLVNFI 288 (295)
Q Consensus 243 k~T~p~~~~le~a~~---------------------------------~~~~~~~~A~~~L~~l~~-~~~~~L~~l~~~~ 288 (295)
|+|||++++++.+.+ .+++|.++|++.|+.+|. +.++.|.++++|+
T Consensus 238 K~T~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~~~~~L~~la~~i 317 (322)
T COG0142 238 KPTLPVLLALEKANEDQKLLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSEAKEALLELADFI 317 (322)
T ss_pred CchHHHHHHHHcCchhhHHHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999997777 489999999999999974 4678999999999
Q ss_pred hccCC
Q 037594 289 VSFGN 293 (295)
Q Consensus 289 ~~R~~ 293 (295)
++|.+
T Consensus 318 ~~R~~ 322 (322)
T COG0142 318 IKRKY 322 (322)
T ss_pred HhccC
Confidence 99964
No 3
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=1.3e-63 Score=465.97 Aligned_cols=274 Identities=25% Similarity=0.403 Sum_probs=249.3
Q ss_pred chhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhh
Q 037594 15 QVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQ 93 (295)
Q Consensus 15 ~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIh 93 (295)
++..++++.++.|++.|.+.+.... +.+.++++|++ .||||+||.|++++++++|++.+.++++|++|||||+|||||
T Consensus 4 ~~~~~~~~~l~~v~~~l~~~~~~~~-~~l~~~~~~~~~~gGKriRp~L~ll~~~~~~~~~~~~~~~A~aiEliH~asLiH 82 (319)
T TIGR02748 4 DIYSFLQKDIDSIEKELEKAVQAEH-PVLSEASLHLLEAGGKRIRPVFVLLAGKFGDYDLDAIKHVAVALELIHMASLVH 82 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788899999999999987643 46999999999 999999999999999999888888999999999999999999
Q ss_pred cCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCCce-ee
Q 037594 94 DDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEGKE-VS 168 (295)
Q Consensus 94 DDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~~~-~~ 168 (295)
||| ||+|++|||+||+|.+||+++||++||||+++|++.+++++... +++++ ..++.||.+|+.+.... ++
T Consensus 83 DDI--~D~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~Gq~~~~~~~~~~~~~ 158 (319)
T TIGR02748 83 DDV--IDDADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKDPRAHQILSHTI--VEVCRGEIEQIKDKYNFDQN 158 (319)
T ss_pred ccc--cCCCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH--HHHHHHHHHHHHhccCCCCC
Confidence 999 99999999999999999999999999999999999998865432 67777 88999999999776443 78
Q ss_pred ccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCC
Q 037594 169 LSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYP 247 (295)
Q Consensus 169 ~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p 247 (295)
+++|..++.+|||+||++||.+|++++|++++.++.+++||+++|+||||+||++|++++++.+|| .++|+++||+|+|
T Consensus 159 ~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp 238 (319)
T TIGR02748 159 LRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLP 238 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ceeecc----------------------------------CchhhHHHHHHHHHhhccccCCC-CCCchhhhhhhhhccC
Q 037594 248 KLVGID----------------------------------GSKKHAKELIAEAKQELAYFDPT-RAAPLDHLVNFIVSFG 292 (295)
Q Consensus 248 ~~~~le----------------------------------~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~~~~R~ 292 (295)
++++++ ++++.+++|.++|.+.|+.+|++ .++.|..+++|+++|.
T Consensus 239 ~l~al~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~ 318 (319)
T TIGR02748 239 VLYAMEDPFLKKRIEQVLEETTAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLPDGRAKKPLQEIAKYIGKRK 318 (319)
T ss_pred HHHHhcCcchhHHHHHHHcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 998654 46778899999999999999754 4688999999999996
Q ss_pred C
Q 037594 293 N 293 (295)
Q Consensus 293 ~ 293 (295)
+
T Consensus 319 ~ 319 (319)
T TIGR02748 319 Y 319 (319)
T ss_pred C
Confidence 4
No 4
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=2.3e-63 Score=464.56 Aligned_cols=273 Identities=24% Similarity=0.402 Sum_probs=247.5
Q ss_pred hhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhc
Q 037594 16 VNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQD 94 (295)
Q Consensus 16 ~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhD 94 (295)
+..++++.++.|++.|.+.+... ++.+.++.+|.+ .||||+||.|++++++++|++.+.++++|++||+||+||||||
T Consensus 6 ~~~~i~~~l~~v~~~l~~~~~~~-~~~l~~~~~~~~~~~GKrlRp~l~ll~~~~~g~~~~~~~~~A~avEllH~asLiHD 84 (323)
T PRK10888 6 INELTAQDMAGVNAAILEQLNSD-VQLINQLGYYIISGGGKRIRPMIAVLAARAVGYQGNAHVTIAALIEFIHTATLLHD 84 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHhCCCchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHc
Confidence 46677888999999999998764 345999999999 9999999999999999999988899999999999999999999
Q ss_pred CCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCCce-eec
Q 037594 95 DLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEGKE-VSL 169 (295)
Q Consensus 95 DI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~~~-~~~ 169 (295)
|| ||++++|||+||+|.+||+++||++||||++.+++.+++++... +++++ ..+++||.+|+.+..+. +++
T Consensus 85 DI--~D~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~s~ 160 (323)
T PRK10888 85 DV--VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAV--NVIAEGEVLQLMNVNDPDITE 160 (323)
T ss_pred cc--ccCCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCH
Confidence 99 99999999999999999999999999999999999998764332 66777 78999999999775443 788
Q ss_pred cccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCCc
Q 037594 170 SELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPK 248 (295)
Q Consensus 170 ~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~ 248 (295)
++|..|+.+|||+||++||.+|++++|++++.++.+++||+++|+||||+||++|++++++.+|| .++||++||+|||+
T Consensus 161 ~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~ 240 (323)
T PRK10888 161 ENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPL 240 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred eeec-------------------------------------cCchhhHHHHHHHHHhhccccCCC-CCCchhhhhhhhhc
Q 037594 249 LVGI-------------------------------------DGSKKHAKELIAEAKQELAYFDPT-RAAPLDHLVNFIVS 290 (295)
Q Consensus 249 ~~~l-------------------------------------e~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~~~~ 290 (295)
++++ +++++.+++|.++|++.|+.+|+. .++.|..+++++++
T Consensus 241 l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~ 320 (323)
T PRK10888 241 LHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQ 320 (323)
T ss_pred HHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 9754 345566789999999999999754 46899999999999
Q ss_pred cCC
Q 037594 291 FGN 293 (295)
Q Consensus 291 R~~ 293 (295)
|..
T Consensus 321 R~~ 323 (323)
T PRK10888 321 RDR 323 (323)
T ss_pred CcC
Confidence 963
No 5
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=5.7e-63 Score=472.91 Aligned_cols=273 Identities=24% Similarity=0.306 Sum_probs=247.0
Q ss_pred hhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CC--chhhhhhhhhhhhhhccchh-----------------hH
Q 037594 16 VNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PG--GKRLMSTLCIASCEMIGGSQ-----------------SV 75 (295)
Q Consensus 16 ~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~--GK~lRp~l~~~~~~~~g~~~-----------------~~ 75 (295)
+...++.+++.|++.|.+.+....| .+.++++|++ .| |||+||.|++++++++|.+. +.
T Consensus 84 ~~~~i~~~L~~v~~~L~~~v~~~~~-~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 162 (422)
T PLN02890 84 PFSLVADELSLLANKLRSMVVAEVP-KLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASELRTR 162 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCh-HHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhccchhhh
Confidence 4556778899999999999877544 6999999999 88 99999999999999988642 44
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----ccccccccc
Q 037594 76 AMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEG 151 (295)
Q Consensus 76 ~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~ 151 (295)
++++|++|||||+|||||||| ||++++|||+||+|.+||++.||++||||++.|+..++...... +++++ ..
T Consensus 163 ~~~~AaavEliH~ASLVHDDI--iD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~--~~ 238 (422)
T PLN02890 163 QQNIAEITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAV--EH 238 (422)
T ss_pred HHHHHHHHHHHHHHHHHHccc--ccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH--HH
Confidence 789999999999999999999 99999999999999999999999999999999999998754332 67777 89
Q ss_pred ccccceecccCCCce-eeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChh
Q 037594 152 IAAGQIMDINSEGKE-VSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPE 230 (295)
Q Consensus 152 ~~~Gq~~dl~~~~~~-~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~ 230 (295)
+++||++|+.+..+. +++++|..++.+|||+||+.||.+|++++|++++.++.+++||+++|+||||+||++||+++++
T Consensus 239 l~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~~~ 318 (422)
T PLN02890 239 LVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTSA 318 (422)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChh
Confidence 999999999887543 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh-hhhhhhccccCCCceee---------------------------------ccCchhhHHHHHHHHHhhccccCCC
Q 037594 231 MREK-TGRDMMRDKATYPKLVG---------------------------------IDGSKKHAKELIAEAKQELAYFDPT 276 (295)
Q Consensus 231 ~~GK-~~~Dl~~gk~T~p~~~~---------------------------------le~a~~~~~~~~~~A~~~L~~l~~~ 276 (295)
.+|| .++||++||+|+|++++ ++++++.+++|+++|.+.|+.+|+.
T Consensus 319 ~~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A~~~L~~lp~s 398 (422)
T PLN02890 319 SLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLPET 398 (422)
T ss_pred hhCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999 99999999999999973 5677888999999999999999764
Q ss_pred C-------CCchhhhhhhhhccCC
Q 037594 277 R-------AAPLDHLVNFIVSFGN 293 (295)
Q Consensus 277 ~-------~~~L~~l~~~~~~R~~ 293 (295)
. ++.|..|++++++|.+
T Consensus 399 ~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 399 DDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred ccccchHHHHHHHHHHHHHHhccC
Confidence 3 6789999999999975
No 6
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=4.5e-63 Score=462.65 Aligned_cols=273 Identities=26% Similarity=0.365 Sum_probs=247.4
Q ss_pred chhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccch---hhHHHHHHHHHHHHHHHH
Q 037594 15 QVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGS---QSVAMSMACAIELLVTMA 90 (295)
Q Consensus 15 ~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~---~~~~~~~A~avEliH~as 90 (295)
++..+++..+..|++.+.+.+....| .+.++++|++ .||||+||.|++++++++|+. .+..+.+|++|||||+||
T Consensus 5 ~~~~~~~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKrlRp~l~ll~~~~~~~~~~~~~~~~~~A~avEliH~as 83 (322)
T TIGR02749 5 SLFAPVEDDLYLLTDNLKSLVGARHP-ILYAAAEHLFSAGGKRLRPAIVLLVSRATAEQQELTPRHRRLAEITEMIHTAS 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHCCCchHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHHHH
Confidence 46678888999999999999987555 5999999999 999999999999999998753 467889999999999999
Q ss_pred HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCCce
Q 037594 91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEGKE 166 (295)
Q Consensus 91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~~~ 166 (295)
|||||| ||+|++|||+||+|.+||+++||++||||++.|++.++++.... +++++ ..++.||++|+.+....
T Consensus 84 LiHDDi--iD~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~Gq~~~~~~~~~~ 159 (322)
T TIGR02749 84 LVHDDV--IDESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVI--TDFAEGEIKQGLNQFDS 159 (322)
T ss_pred HHHccc--ccCccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--HHHHHHHHHHHHcccCC
Confidence 999999 99999999999999999999999999999999999998764332 66677 78999999998765433
Q ss_pred -eeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhcccc
Q 037594 167 -VSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKA 244 (295)
Q Consensus 167 -~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~ 244 (295)
+++++|.+|+.+|||+||++||.+|++++|++++.++.+++||.++|+||||+||++|++++++.+|| .++||++||+
T Consensus 160 ~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~ 239 (322)
T TIGR02749 160 DLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNL 239 (322)
T ss_pred CCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCceee---------------------------------ccCchhhHHHHHHHHHhhccccCCC-CCCchhhhhhhhhc
Q 037594 245 TYPKLVG---------------------------------IDGSKKHAKELIAEAKQELAYFDPT-RAAPLDHLVNFIVS 290 (295)
Q Consensus 245 T~p~~~~---------------------------------le~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~~~~ 290 (295)
|+|++++ ++++++.+++|.++|++.|..+|++ .++.|..|++++++
T Consensus 240 Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~ 319 (322)
T TIGR02749 240 TAPVLFALEEEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSPPREALKELVHFVLS 319 (322)
T ss_pred hHHHHHHHhcChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 9999975 4567788899999999999999754 46889999999999
Q ss_pred cC
Q 037594 291 FG 292 (295)
Q Consensus 291 R~ 292 (295)
|.
T Consensus 320 R~ 321 (322)
T TIGR02749 320 RL 321 (322)
T ss_pred cC
Confidence 96
No 7
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=7e-63 Score=461.79 Aligned_cols=274 Identities=26% Similarity=0.383 Sum_probs=247.3
Q ss_pred chhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccch---hhHHHHHHHHHHHHHHHH
Q 037594 15 QVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGS---QSVAMSMACAIELLVTMA 90 (295)
Q Consensus 15 ~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~---~~~~~~~A~avEliH~as 90 (295)
++..++++.+..|++.|.+.+....| .+.++++|++ .||||+||.||+++++++|++ ...++.+|+++|++|+||
T Consensus 6 ~~~~~~~~~l~~i~~~l~~~~~~~~~-~l~~~~~~~~~~gGKr~Rp~L~ll~~~~~~~~~~~~~~~~~~A~aiEllH~as 84 (323)
T CHL00151 6 NLLTPIEEELLILEDNLKKLIGSGHP-ILYAAAKHLFSAGGKRIRPAIVLLVAKATGGNMEIKTSQQRLAEITEIIHTAS 84 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHHHH
Confidence 45668889999999999999877555 6999999999 999999999999999999874 345778999999999999
Q ss_pred HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCCce
Q 037594 91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEGKE 166 (295)
Q Consensus 91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~~~ 166 (295)
|||||| ||++++|||+||+|.+||+++||++||||++.|++.++++.... +++++ ..++.||..|..+....
T Consensus 85 LiHDDi--~D~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~--~~l~~G~~~~~~~~~~~ 160 (323)
T CHL00151 85 LVHDDV--IDECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANLNNLEVVKLISKVI--TDFAEGEIRQGLVQFDT 160 (323)
T ss_pred HHHccc--ccCccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhCCChHHHHHHHHHH--HHHHHHHHHHHhcCCCC
Confidence 999999 99999999999999999999999999999999999998754332 56667 78899999987665433
Q ss_pred -eeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhcccc
Q 037594 167 -VSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKA 244 (295)
Q Consensus 167 -~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~ 244 (295)
.++++|..++.+|||+||++||.+|++++|++++.++.+++||.++|+||||+||++|++++++.+|| .|+|+++||+
T Consensus 161 ~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~ 240 (323)
T CHL00151 161 TLSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNL 240 (323)
T ss_pred CCCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCch
Confidence 77889999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCceee---------------------------------ccCchhhHHHHHHHHHhhccccCCC-CCCchhhhhhhhhc
Q 037594 245 TYPKLVG---------------------------------IDGSKKHAKELIAEAKQELAYFDPT-RAAPLDHLVNFIVS 290 (295)
Q Consensus 245 T~p~~~~---------------------------------le~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~~~~ 290 (295)
|||++++ ++++++.+++|.++|++.|+.+|.. .++.|..+++++++
T Consensus 241 Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~ 320 (323)
T CHL00151 241 TAPVLFALTQNSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPPSSAKDSLIEIANFIIN 320 (323)
T ss_pred HHHHHHHHhcChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 9999986 5677888999999999999999753 46889999999999
Q ss_pred cCC
Q 037594 291 FGN 293 (295)
Q Consensus 291 R~~ 293 (295)
|.+
T Consensus 321 R~~ 323 (323)
T CHL00151 321 RLN 323 (323)
T ss_pred ccC
Confidence 974
No 8
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=1.5e-62 Score=470.08 Aligned_cols=277 Identities=27% Similarity=0.378 Sum_probs=248.9
Q ss_pred cccchhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhcc------chhhHHHHHHHHHH
Q 037594 12 KFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIG------GSQSVAMSMACAIE 84 (295)
Q Consensus 12 ~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g------~~~~~~~~~A~avE 84 (295)
++.++..+++.+++.|++.|.+.+....| .+.++++|++ .||||+||.|++++++++| ...++++.+|++||
T Consensus 93 ~~~~~~~~v~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKriRP~Lvll~a~a~g~~~g~~~~~~~~~~lAaaiE 171 (416)
T PLN02857 93 SLSELFEPVADDLQQLNDNLQSIVGAENP-VLMSAAEQIFGAGGKRMRPALVFLVSRATAELAGLKELTTEHRRLAEITE 171 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCch-HHHHHHHHHHhCCCccHhHHHHHHHHHHhccccCCCcchHHHHHHHHHHH
Confidence 44557778899999999999999976544 6899999999 9999999999999999875 23477899999999
Q ss_pred HHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecc
Q 037594 85 LLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDI 160 (295)
Q Consensus 85 liH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl 160 (295)
|||+|||||||| ||++++|||+||+|.+||+++|||+||||+++|++.++++.... +++++ ..++.||+.|+
T Consensus 172 liH~ASLIHDDI--~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~--~~l~~Gei~q~ 247 (416)
T PLN02857 172 MIHTASLIHDDV--LDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVI--KDFASGEIKQA 247 (416)
T ss_pred HHHHHHHHHCcc--ccCCcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHH--HHHHhhHHHHH
Confidence 999999999999 99999999999999999999999999999999999998764332 56666 78899999887
Q ss_pred cCCCce-eeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhh
Q 037594 161 NSEGKE-VSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRD 238 (295)
Q Consensus 161 ~~~~~~-~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~D 238 (295)
.+.... .++++|..++++|||+||+.||.+|++++|++++.++.+++||+++|+||||+||++|++++++.+|| .++|
T Consensus 248 ~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~~~~GK~~g~D 327 (416)
T PLN02857 248 SSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTEQLGKPAGSD 327 (416)
T ss_pred hcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchh
Confidence 765433 78899999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hhccccCCCcee---------------------------------eccCchhhHHHHHHHHHhhccccCCC-CCCchhhh
Q 037594 239 MMRDKATYPKLV---------------------------------GIDGSKKHAKELIAEAKQELAYFDPT-RAAPLDHL 284 (295)
Q Consensus 239 l~~gk~T~p~~~---------------------------------~le~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l 284 (295)
|.+||+|+|+++ ++++|++.++++.++|++.|..+|.+ .++.|..|
T Consensus 328 L~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp~~~~~~~L~~L 407 (416)
T PLN02857 328 LAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLPRGAFRSSLEDM 407 (416)
T ss_pred hhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999997 46678889999999999999999754 46789999
Q ss_pred hhhhhccCC
Q 037594 285 VNFIVSFGN 293 (295)
Q Consensus 285 ~~~~~~R~~ 293 (295)
++|+++|.+
T Consensus 408 ~~~~~~R~~ 416 (416)
T PLN02857 408 VDYNLERIY 416 (416)
T ss_pred HHHHHhccC
Confidence 999999964
No 9
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.7e-59 Score=436.67 Aligned_cols=276 Identities=38% Similarity=0.620 Sum_probs=252.7
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCC-ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhcc-chhhHHHHHHHHHHHHHHHH
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLP-HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIG-GSQSVAMSMACAIELLVTMA 90 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~-~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g-~~~~~~~~~A~avEliH~as 90 (295)
+++..|+....+.+++.+...++.. +|..+++.++|.+ .+||++||.+|+++|+++| |....++++|+++||||++|
T Consensus 65 ~d~~~~~~~~~~~ln~~l~~~~~~~~~~~~i~~a~ry~~la~gKr~rP~l~~~~~e~~~~g~~~~q~~~A~i~EMIHtaS 144 (384)
T KOG0776|consen 65 FDELSYMARKARSLNGALHYAVPLANEPLLISEAMRYLLLAGGKRVRPLLCLAACELVGSGDESSQRSLAEIVEMIHTAS 144 (384)
T ss_pred hhHHHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHhcccccCchhhhhHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 5678888899999999999999876 7788999999999 9999999999999999999 89999999999999999999
Q ss_pred HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCCc-
Q 037594 91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEGK- 165 (295)
Q Consensus 91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~~- 165 (295)
|||||+||||++++|||+||.|+.||+++|||+||||++.|++.++.+.++. +++++ .+++.|++.+....+.
T Consensus 145 LIHDDv~~mD~~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n~~v~elm~~aI--~dLv~ge~~~~~~~~~~ 222 (384)
T KOG0776|consen 145 LIHDDVPCMDDADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLENPVVVELMASAI--ADLVRGEFTQGLVAGEG 222 (384)
T ss_pred HHhcCcccccccccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccCchHHHHHHHHH--HHHHHhhhhcccccccc
Confidence 9999999999999999999999999999999999999999999999987654 67777 7888888777665531
Q ss_pred ----eeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhh
Q 037594 166 ----EVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMM 240 (295)
Q Consensus 166 ----~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~ 240 (295)
+..+++|+.+..+|||+|++.+|++|++++|+++++++.+++||+++|++||+.||++|++...+.+|| .|.|+.
T Consensus 223 ~d~~~~~~e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag~Dl~ 302 (384)
T KOG0776|consen 223 LDLDDVGLEYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAGKDLK 302 (384)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcchhhhhh
Confidence 156789999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ccccCCCceeec------------------------------cCchhhHHHHHHHHHhhccccCC-CCCCchhhhhhhhh
Q 037594 241 RDKATYPKLVGI------------------------------DGSKKHAKELIAEAKQELAYFDP-TRAAPLDHLVNFIV 289 (295)
Q Consensus 241 ~gk~T~p~~~~l------------------------------e~a~~~~~~~~~~A~~~L~~l~~-~~~~~L~~l~~~~~ 289 (295)
.|+.|+|+++++ +.|..++++|.++|++.|..+|+ +.+++|+.|+.++.
T Consensus 303 ~g~lT~P~Lf~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~~v~~a~~la~~~~~~Al~~l~~~p~s~ar~aL~~l~~~~~ 382 (384)
T KOG0776|consen 303 AGKLTAPVLFALEKSPELREKLEREFSEPLDGFDADKAVPGVALAKYLARRHNNKALEALQSLPRSEARSALENLVLAVL 382 (384)
T ss_pred hccccccchhhhhhChHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 999999999854 45567889999999999999965 46789999999998
Q ss_pred cc
Q 037594 290 SF 291 (295)
Q Consensus 290 ~R 291 (295)
+|
T Consensus 383 ~r 384 (384)
T KOG0776|consen 383 TR 384 (384)
T ss_pred cC
Confidence 77
No 10
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=5.3e-58 Score=416.83 Aligned_cols=244 Identities=38% Similarity=0.614 Sum_probs=227.2
Q ss_pred HhHHHHhhhcC-CCchhhhhhhhhhhhhhccchh-hHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchh
Q 037594 41 AILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQ-SVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEA 118 (295)
Q Consensus 41 ~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~-~~~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~ 118 (295)
+.+.++++|.+ .+||++||.+++++++++|++. +.+..+|+++|++|+|||||||| ||+|++|||+||+|.+||+.
T Consensus 4 ~~l~~~~~~~~~~~GK~~Rp~l~~~~~~~~g~~~~~~~~~la~aiEllh~asLIhDDI--~D~s~~RRG~p~~~~~~G~~ 81 (259)
T cd00685 4 ELLREALRYLLLAGGKRLRPLLVLLAARALGGPELEAALRLAAAIELLHTASLVHDDV--MDNSDLRRGKPTVHKVFGNA 81 (259)
T ss_pred hHHHHHHHHHHHcCCccHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHhhh--ccCCcccCCCCcHHHHhCcc
Confidence 46899999998 9999999999999999999988 89999999999999999999999 99999999999999999999
Q ss_pred hHHHhHhHHhHhhhhhhhhhhc---cc----cccccccccccccceecccCCCc-eeeccccchhhhccccCeeeeeeee
Q 037594 119 TAILACQALHCLAMQHIAIIKA---KN----INSAVGSEGIAAGQIMDINSEGK-EVSLSELNFIHRHKTGKFIEASIVS 190 (295)
Q Consensus 119 ~Ail~gd~L~~~a~~~l~~l~~---~~----l~~~~~~~~~~~Gq~~dl~~~~~-~~~~~~~~~i~~~KTa~Lf~~~~~~ 190 (295)
.|||+||+|++.+++.++++.. .. +++.+ ..++.||++|+.+... .+++++|.+|+.+|||+||.++|.+
T Consensus 82 ~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KT~~l~~~~~~~ 159 (259)
T cd00685 82 TAILAGDYLLARAFELLARLGNPYYPRALELFSEAI--LELVEGQLLDLLSEYDTDVTEEEYLRIIRLKTAALFAAAPLL 159 (259)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH--HHHHHHHHHHHHccCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999988654 22 56666 8899999999988765 3889999999999999999999999
Q ss_pred eeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCCceeeccCchhhHHHHHHHHHhh
Q 037594 191 GVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQE 269 (295)
Q Consensus 191 ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~ 269 (295)
|+++++++++.++.+++||.++|++|||+||++|++++++.+|| .++||++||+|||+++++ ++.++.+.++|+..
T Consensus 160 ~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l---~~~~~~~~~~a~~~ 236 (259)
T cd00685 160 GALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL---RELAREYEEKALEA 236 (259)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH---HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 999999999999999999 88999999999999
Q ss_pred ccccCCCC-CCchhhhhhhhhcc
Q 037594 270 LAYFDPTR-AAPLDHLVNFIVSF 291 (295)
Q Consensus 270 L~~l~~~~-~~~L~~l~~~~~~R 291 (295)
|+.+++.. ++.|.++++++.+|
T Consensus 237 l~~~~~~~~~~~l~~~~~~~~~r 259 (259)
T cd00685 237 LKALPESPAREALRALADFILER 259 (259)
T ss_pred HHcCCCcHHHHHHHHHHHHHHcC
Confidence 99997543 57799999999887
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=8.4e-56 Score=402.66 Aligned_cols=222 Identities=36% Similarity=0.594 Sum_probs=201.1
Q ss_pred HHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHH
Q 037594 44 HEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAIL 122 (295)
Q Consensus 44 ~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail 122 (295)
.+++.|++ .||||+||.|++++++++|++.+.+.++|++|||||+|||||||| ||+|++|||+||+|.+||++.|||
T Consensus 2 ~~~~~~~~~~~GK~~Rp~l~~~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI--~D~s~~RRG~pt~~~~~G~~~Ail 79 (260)
T PF00348_consen 2 LEPARYYILRGGKRIRPLLVLLAAEALGGDPEKAIPLAAAVELIHAASLIHDDI--IDNSDLRRGKPTVHKKFGNAIAIL 79 (260)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCSEETTEECHHHHHHHHHHHH
T ss_pred hHHHHHHhhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhh--hcccccCCCCccccccccccchhh
Confidence 46677777 999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hHhHHhHhhhhhhhhhhc--c--c-------cccccccccccccceecccCCCceeeccccchhhhccccCeeeeeeeee
Q 037594 123 ACQALHCLAMQHIAIIKA--K--N-------INSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSG 191 (295)
Q Consensus 123 ~gd~L~~~a~~~l~~l~~--~--~-------l~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~g 191 (295)
+||+|++.|++.++++.. + . +.... .....||..|+.+....+++++|..|+++|||+||++||++|
T Consensus 80 ~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~g 157 (260)
T PF00348_consen 80 AGDYLLALAFELLARLGHFDPSERVLRILELFIEAL--IEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQLG 157 (260)
T ss_dssp HHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhc--ccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHHHH
Confidence 999999999999998751 1 1 12222 344567999998875558899999999999999999999999
Q ss_pred eEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCCceeeccCchhhHHHHHHHHHhh
Q 037594 192 VIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQE 269 (295)
Q Consensus 192 a~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~ 269 (295)
++++|++++.++.+++||.++|+||||+||++|++++++..|| .++||++||+|||++++++.+.+..+++...+.+.
T Consensus 158 a~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~~~~~l~~~~~~ 236 (260)
T PF00348_consen 158 AILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREELRELLQEAYGK 236 (260)
T ss_dssp HHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999 89999999999999999999888888887775543
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=1.3e-43 Score=316.89 Aligned_cols=227 Identities=30% Similarity=0.478 Sum_probs=203.1
Q ss_pred hhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcc-cchhhHHHhHhHHhHhhhhhh
Q 037594 57 LMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKV-FGEATAILACQALHCLAMQHI 135 (295)
Q Consensus 57 lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~-~G~~~Ail~gd~L~~~a~~~l 135 (295)
+||.+++++++++|++.+.+..+++++|+||++++||||| +|++..|||+||+|.+ ||...|+++||+++..++..+
T Consensus 1 ~r~~~~~~~~~~~~~~~~~~~~~a~ave~l~~~~li~DDI--~D~~~~rrg~~~~~~~~~g~~~ai~~gd~l~~~a~~~l 78 (236)
T cd00867 1 SRPLLVLLLARALGGDLEAALRLAAAVELLHAASLVHDDI--VDDSDLRRGKPTAHLRRFGNALAILAGDYLLARAFQLL 78 (236)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccc--ccCCccCCCCccHhHHhhCHhHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999 9999999999999999 999999999999999999999
Q ss_pred hhhhcc----ccccccccccccccceecccCCCc-eeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhh
Q 037594 136 AIIKAK----NINSAVGSEGIAAGQIMDINSEGK-EVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGK 210 (295)
Q Consensus 136 ~~l~~~----~l~~~~~~~~~~~Gq~~dl~~~~~-~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~ 210 (295)
.++... .+.+.+ ..++.||.+|+.+..+ .+++++|..++++|||++|..+|.+++.+++.+++..+.+++||.
T Consensus 79 ~~~~~~~~~~~~~~~~--~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (236)
T cd00867 79 ARLGYPRALELFAEAL--RELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDYGR 156 (236)
T ss_pred HhCChHHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCcCHHHHHHHHHHHH
Confidence 885321 256667 8999999999988753 378999999999999999999999999999998888899999999
Q ss_pred hhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhccccCCC---CCCchhhhhhh
Q 037594 211 YVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPT---RAAPLDHLVNF 287 (295)
Q Consensus 211 ~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~---~~~~L~~l~~~ 287 (295)
++|+||||.||++|+.++.+..||.++|+.+||+|||.+++ .+.+.++.+++.+.+..+.+. .+..+..++.+
T Consensus 157 ~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (236)
T cd00867 157 ALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA----RERAAEYAEEAYAALEALPPSLPRARRALIALADF 232 (236)
T ss_pred HHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 667777778887777776432 34567778877
Q ss_pred hhcc
Q 037594 288 IVSF 291 (295)
Q Consensus 288 ~~~R 291 (295)
+.+|
T Consensus 233 ~~~r 236 (236)
T cd00867 233 LYRR 236 (236)
T ss_pred HHhC
Confidence 7665
No 13
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=280.98 Aligned_cols=218 Identities=21% Similarity=0.327 Sum_probs=185.2
Q ss_pred HhHHHHhhhcCCCchhhhhhhhhhhhhhccch-------hhHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCc
Q 037594 41 AILHEAMRYSLPGGKRLMSTLCIASCEMIGGS-------QSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHK 113 (295)
Q Consensus 41 ~~l~~~~~~~~~~GK~lRp~l~~~~~~~~g~~-------~~~~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~ 113 (295)
+++...+.|.+.|||..|+..++.+.+++.++ ...+..++|+||++++..||.||| ||+|.+|||+||||+
T Consensus 38 ~~~~~~L~yN~~GGK~nRgl~vv~s~~~L~~~~~l~~~~~~~a~~lGw~vElLQaffLiaDDI--MDnS~tRRGqpCWy~ 115 (347)
T KOG0711|consen 38 EWLKEVLDYNVIGGKLNRGLSVVDSFKALVEPRKLDEEELQLALILGWCVELLQAFFLVADDI--MDNSKTRRGQPCWYQ 115 (347)
T ss_pred HHHHHHHhccCcccccccchhHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh--hccccccCCCcceee
Confidence 57778888988999999999999998887652 245677999999999999999999 999999999999999
Q ss_pred ccchh-hHHHhHhHHhHhhhhhhhhhhcc-----c----cccccccccccccceecccCCCce---eeccccchhhhccc
Q 037594 114 VFGEA-TAILACQALHCLAMQHIAIIKAK-----N----INSAVGSEGIAAGQIMDINSEGKE---VSLSELNFIHRHKT 180 (295)
Q Consensus 114 ~~G~~-~Ail~gd~L~~~a~~~l~~l~~~-----~----l~~~~~~~~~~~Gq~~dl~~~~~~---~~~~~~~~i~~~KT 180 (295)
+-|.+ .|||.+.+|-+.-..+|...-.. . +.+.. ..++.||+++....+.. ++++.|..|+..||
T Consensus 116 ~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~elf~ev~--f~T~lGdllt~~~~~~~ls~fsl~~y~~Iv~~KT 193 (347)
T KOG0711|consen 116 KPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVELFHEVT--FQTELGDLLTTPEGNKDLSKFSLEKYVFIVEYKT 193 (347)
T ss_pred cCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHH--HHHhhhccccCcccchhHhhhhHHHHHHHhhccc
Confidence 99996 89999888877777777652111 1 33333 56778987776554432 89999999999999
Q ss_pred cCe-eeeeeeeeeEecC-CCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhh
Q 037594 181 GKF-IEASIVSGVIIGG-GNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKH 258 (295)
Q Consensus 181 a~L-f~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~ 258 (295)
|.| |.+|..+|..++| .+.+.......+...+|..||++||++|++|||+.+||.|+||+++||||.++.|++++...
T Consensus 194 a~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fgDp~vtgkiGtDIqDnKCsWlv~~al~~~~~e 273 (347)
T KOG0711|consen 194 AYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFGDPEVTGKIGTDIQDNKCSWLVVKALQRASAE 273 (347)
T ss_pred cceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcCChhhcCCCCCccccCceeeehHHHHhhcCHH
Confidence 999 9999999999998 46667778899999999999999999999999999999999999999999999999988665
Q ss_pred HHHH
Q 037594 259 AKEL 262 (295)
Q Consensus 259 ~~~~ 262 (295)
+.+.
T Consensus 274 q~~~ 277 (347)
T KOG0711|consen 274 QYKI 277 (347)
T ss_pred HHHH
Confidence 5443
No 14
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.9e-36 Score=260.02 Aligned_cols=225 Identities=20% Similarity=0.305 Sum_probs=200.5
Q ss_pred HhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhh
Q 037594 41 AILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEAT 119 (295)
Q Consensus 41 ~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~ 119 (295)
+.+.++..|.+ .+||.+|.-|.+....++..+.++...+...+||+|++||+.||| .|++.+|||.|++|..||++.
T Consensus 21 ~ill~Py~yilq~PGKqfR~~L~~afNhwl~~P~dkLaii~~ivemLHNsSLLIDDI--EDNs~LRRG~pvaHsIyGvpS 98 (322)
T KOG0777|consen 21 SILLKPYNYILQKPGKQFRLNLIVAFNHWLNLPKDKLAIISQIVEMLHNSSLLIDDI--EDNSPLRRGQPVAHSIYGVPS 98 (322)
T ss_pred HHHhchHHHHHhCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccceeeccc--cccchhhcCCcchhhhccCcc
Confidence 46778999999 999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred HHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCCce--eeccccchhhhccccCeeeeeeeeeeE
Q 037594 120 AILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEGKE--VSLSELNFIHRHKTGKFIEASIVSGVI 193 (295)
Q Consensus 120 Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~~~--~~~~~~~~i~~~KTa~Lf~~~~~~ga~ 193 (295)
.|++++|++..|.+.++.+..++ +.+.+ ..+..||.+|+.|...- ++++.|..|+..|||-||.++.++.-.
T Consensus 99 tINtANY~yFlalekV~qLdhP~a~kifteqL--leLHrGQGldIYWRD~~tcPtee~Yk~Mv~~KTGGLF~La~rLMql 176 (322)
T KOG0777|consen 99 TINTANYMYFLALEKVSQLDHPNAIKIFTEQL--LELHRGQGLDIYWRDFLTCPTEEMYKNMVMNKTGGLFRLALRLMQL 176 (322)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhcCCCcceeeeccCcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999999987765 56666 78899999999998654 899999999999999999999999887
Q ss_pred ecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCCceee---------------------
Q 037594 194 IGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKLVG--------------------- 251 (295)
Q Consensus 194 lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~~~~--------------------- 251 (295)
.+...+ .+..+-.-+|+.|||+|||+++-..+..-.| ..+|+.|||.++|+++|
T Consensus 177 fS~~ke----dl~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~~q~~Qvl~ILrqRT~di 252 (322)
T KOG0777|consen 177 FSHHKE----DLVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTKGQTEQVLRILRQRTSDI 252 (322)
T ss_pred HHhcch----hHHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcCCchHHHHHHHHHhhccc
Confidence 775443 4678888999999999999999877777788 99999999999999984
Q ss_pred ---------------ccCchhhHHHHHHHHHhhcccc
Q 037594 252 ---------------IDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 252 ---------------le~a~~~~~~~~~~A~~~L~~l 273 (295)
+++++...+++..+|+..+...
T Consensus 253 diKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~ 289 (322)
T KOG0777|consen 253 DIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKND 289 (322)
T ss_pred hHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666777777777777654
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.81 E-value=2.7e-21 Score=169.13 Aligned_cols=185 Identities=29% Similarity=0.423 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcc---cchhhHHHhHhHHhHhhhhhhhhhhc----ccccccccc
Q 037594 77 MSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKV---FGEATAILACQALHCLAMQHIAIIKA----KNINSAVGS 149 (295)
Q Consensus 77 ~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~---~G~~~Ail~gd~L~~~a~~~l~~l~~----~~l~~~~~~ 149 (295)
..++.++|.+|+++++|||| +|++..|||+|++|.. +|.+.+++.|+.++..+++.+..... ..+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi--~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 88 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDI--VDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGSPEALEILAEAL-- 88 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhc--ccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--
Confidence 57899999999999999999 9999999999999998 99999999999999999999887432 1256666
Q ss_pred ccccccceecccCCCce-eeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCC
Q 037594 150 EGIAAGQIMDINSEGKE-VSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGS 228 (295)
Q Consensus 150 ~~~~~Gq~~dl~~~~~~-~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~ 228 (295)
..++.||..|+.+.... ++.++|..+.+.|||.++...+..++...+.+......+..++.++|.+||+.||+.|+..+
T Consensus 89 ~~~~~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e 168 (243)
T cd00385 89 LDLLEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGD 168 (243)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 88999999999887532 78999999999999999888888888777766666788999999999999999999999887
Q ss_pred hhhhhhhhhhhhccccCCCceeec------------------cCchhhHHHHHHHHHhhcccc
Q 037594 229 PEMREKTGRDMMRDKATYPKLVGI------------------DGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 229 ~~~~GK~~~Dl~~gk~T~p~~~~l------------------e~a~~~~~~~~~~A~~~L~~l 273 (295)
.+.. +|++|+|.++.. +.+.+.+..+.+++.+.+..+
T Consensus 169 ~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (243)
T cd00385 169 AERG--------EGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNEL 223 (243)
T ss_pred HHHh--------CCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 5431 478999988743 344445556666666666655
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=95.87 E-value=0.0072 Score=53.45 Aligned_cols=77 Identities=21% Similarity=0.129 Sum_probs=54.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccc
Q 037594 71 GSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSA 146 (295)
Q Consensus 71 ~~~~~~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~ 146 (295)
..++.....+.++-++|.|...||.| |++..+++...- .-...||+|||.-+.-+.+|++.+.-. ++++
T Consensus 30 l~~~~~~~~~~a~~LVq~aLDtHd~V---~~~~~~~~~~~k----~RQLtVLAGDy~S~~yY~lLA~~~~i~li~~ls~a 102 (212)
T PF07307_consen 30 LSEEEAERYALATMLVQIALDTHDEV---DNAGDESEESSK----ERQLTVLAGDYYSGLYYQLLAESGDISLIRALSEA 102 (212)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhh---ccccccccHHHH----hhhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45678888999999999999999997 664333332111 124689999999999999999965433 5666
Q ss_pred cccccccccc
Q 037594 147 VGSEGIAAGQ 156 (295)
Q Consensus 147 ~~~~~~~~Gq 156 (295)
+ ..+.+..
T Consensus 103 I--~eiNE~K 110 (212)
T PF07307_consen 103 I--KEINELK 110 (212)
T ss_pred H--HHHHHHH
Confidence 6 4444433
No 17
>PLN02632 phytoene synthase
Probab=92.53 E-value=0.018 Score=54.55 Aligned_cols=117 Identities=25% Similarity=0.262 Sum_probs=74.0
Q ss_pred ccccccceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCCh
Q 037594 150 EGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSP 229 (295)
Q Consensus 150 ~~~~~Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~ 229 (295)
..++.|...|+....- .|.+++..-++.-.|++..+++.+... ...+....+.+...+.++|+|+|+.|=+.|+
T Consensus 143 ~~li~g~~~Dl~~~~~-~t~~eL~~Ycy~vAgtVG~l~l~vlg~-~~~~~~~~~~~~~~A~~lG~AlQltNILRDv---- 216 (334)
T PLN02632 143 RDMIEGMRMDLVKSRY-ENFDELYLYCYYVAGTVGLMSVPVMGI-APESKASTESVYNAALALGIANQLTNILRDV---- 216 (334)
T ss_pred HHHHHHHHHHhccCCC-CCHHHHHHHHHHhhHHHHHHHHHHhCC-CCccccchHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 6778898888865422 466777666666666665555544211 1111222245677899999999999988886
Q ss_pred hhhhhhhhhhhccccCCCcee----e------------------ccCchhhHHHHHHHHHhhccccCCCCC
Q 037594 230 EMREKTGRDMMRDKATYPKLV----G------------------IDGSKKHAKELIAEAKQELAYFDPTRA 278 (295)
Q Consensus 230 ~~~GK~~~Dl~~gk~T~p~~~----~------------------le~a~~~~~~~~~~A~~~L~~l~~~~~ 278 (295)
+.|+..|++-+|.=. | ++.--..++.+.++|...+..+|+..+
T Consensus 217 ------~eD~~~GRvYLP~e~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r 281 (334)
T PLN02632 217 ------GEDARRGRVYLPQDELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASR 281 (334)
T ss_pred ------HHHHhCCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhH
Confidence 456666777777321 1 111224577888888888888876443
No 18
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=89.82 E-value=0.029 Score=51.09 Aligned_cols=111 Identities=23% Similarity=0.214 Sum_probs=71.6
Q ss_pred ccccccceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCCh
Q 037594 150 EGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSP 229 (295)
Q Consensus 150 ~~~~~Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~ 229 (295)
..++.|...|+....- .|.+++...+..-.|++..+++.+- +.... +....++.++|+|+|+.|=+.|+
T Consensus 96 ~~li~g~~~Dl~~~~~-~t~~eL~~Y~~~vAg~vg~l~~~i~---~~~~~---~~~~~~A~~lG~AlqltnilRdv---- 164 (265)
T cd00683 96 RDLLAGMAMDLDKRRY-ETLDELDEYCYYVAGVVGLMLLRVF---GASSD---EAALERARALGLALQLTNILRDV---- 164 (265)
T ss_pred HHHHHHHHHhCCCCCC-CCHHHHHHHHHHhHHHHHHHHHHHh---CCCCC---hHHHHHHHHHHHHHHHHHHHHHH----
Confidence 6788999999875432 5666666666665566655544332 21112 24568899999999999988886
Q ss_pred hhhhhhhhhhhccccCCCcee----------------------eccCchhhHHHHHHHHHhhccccCCCC
Q 037594 230 EMREKTGRDMMRDKATYPKLV----------------------GIDGSKKHAKELIAEAKQELAYFDPTR 277 (295)
Q Consensus 230 ~~~GK~~~Dl~~gk~T~p~~~----------------------~le~a~~~~~~~~~~A~~~L~~l~~~~ 277 (295)
+.|+..|++.+|.=. .++.--..++.+...|.+.+..+|+..
T Consensus 165 ------~eD~~~gR~YlP~d~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~ 228 (265)
T cd00683 165 ------GEDARRGRIYLPREELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRS 228 (265)
T ss_pred ------HHHHccCCCcCCHHHHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhh
Confidence 455566677666321 122334456777788888888777543
No 19
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=87.44 E-value=0.1 Score=47.61 Aligned_cols=109 Identities=25% Similarity=0.274 Sum_probs=70.1
Q ss_pred ccccccceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCCh
Q 037594 150 EGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSP 229 (295)
Q Consensus 150 ~~~~~Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~ 229 (295)
..++.|...|+....- .|.+++..-++.-.|++..+.+.+ ++..++ .....+.++|.|+|+.|=+.|+
T Consensus 88 ~~li~g~~~Dl~~~~~-~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~~~----~~~~~a~~lG~AlqltnilRdv---- 155 (266)
T TIGR03465 88 LEVIDGMEMDLEQTRY-PDFAELDLYCDRVAGAVGRLSARI---FGATDA----RTLEYAHHLGRALQLTNILRDV---- 155 (266)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHhHHHHHHHHHHH---hCCCCh----hHHHHHHHHHHHHHHHHHHHHh----
Confidence 6778899889875432 577777776666666776665544 222222 3467899999999999988786
Q ss_pred hhhhhhhhhhhccccCCCcee----e------------------ccCchhhHHHHHHHHHhhccccCCC
Q 037594 230 EMREKTGRDMMRDKATYPKLV----G------------------IDGSKKHAKELIAEAKQELAYFDPT 276 (295)
Q Consensus 230 ~~~GK~~~Dl~~gk~T~p~~~----~------------------le~a~~~~~~~~~~A~~~L~~l~~~ 276 (295)
+.|+..|++.+|.=. + ++.--..++.+.++|.+.+..+|+.
T Consensus 156 ------~eD~~~gR~ylP~~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~ 218 (266)
T TIGR03465 156 ------GEDARRGRIYLPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRR 218 (266)
T ss_pred ------HHHHhCCCeecCHHHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHh
Confidence 455666777777421 1 1122334566777777777777653
No 20
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=87.04 E-value=0.42 Score=45.34 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=63.7
Q ss_pred ccccccceecccCCCce-eeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCC
Q 037594 150 EGIAAGQIMDINSEGKE-VSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGS 228 (295)
Q Consensus 150 ~~~~~Gq~~dl~~~~~~-~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~ 228 (295)
..|+.|...|+...... .|.+++..-+.+=-|..-.+.+.+-.. +|...+......+++..+|+|+|+.|=+.|+
T Consensus 111 ~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~~~A~~lG~aLQlTNIlRDv--- 186 (336)
T TIGR01559 111 RRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESEALSNSMGLFLQKTNIIRDY--- 186 (336)
T ss_pred HHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhHHHHHHHHHHHHHHHHHHHH---
Confidence 56778888777544210 355555544433333332232222111 1221111123467899999999999988887
Q ss_pred hhhhhhhhhhhhccccCCCcee----------------------eccCchhhHHHHHHHHHhhccccCC
Q 037594 229 PEMREKTGRDMMRDKATYPKLV----------------------GIDGSKKHAKELIAEAKQELAYFDP 275 (295)
Q Consensus 229 ~~~~GK~~~Dl~~gk~T~p~~~----------------------~le~a~~~~~~~~~~A~~~L~~l~~ 275 (295)
++|+.+|++=||.=. .++.-...+..+.++|+..+..++.
T Consensus 187 -------~ED~~~GR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~al~yl~~l~~ 248 (336)
T TIGR01559 187 -------LEDINEGRMFWPREIWSKYAKKLGDFKKPENSDKALQCLNELVTNALHHATDCLTYLSRLRD 248 (336)
T ss_pred -------HhHHhCCCCCCCHHHHHHcCCCHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455566777776321 1222233466777777777777743
No 21
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=86.93 E-value=0.1 Score=47.71 Aligned_cols=110 Identities=16% Similarity=0.063 Sum_probs=69.6
Q ss_pred ccccccceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCCh
Q 037594 150 EGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSP 229 (295)
Q Consensus 150 ~~~~~Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~ 229 (295)
..++.|...|+....- .|.++++.-+++-.|++..+++.+- +..+++ ...++.++|.|+|+.|=+.|+
T Consensus 89 ~~li~~~~~Dl~~~~~-~t~~eL~~Y~~~vAg~vg~l~~~i~---g~~~~~----~~~~A~~lG~AlQltniLRDl---- 156 (266)
T TIGR03464 89 LDLLDAFRQDVVVTRY-ATWAELLDYCRYSANPVGRLVLDLY---GASDPE----NVALSDAICTALQLINFWQDV---- 156 (266)
T ss_pred HHHHHHHHHhccCCCC-CCHHHHHHHHHHhHHHHHHHHHHHc---CCCChh----HHHHHHHHHHHHHHHHHHHhh----
Confidence 5678888888865432 5777777766666666666555432 222322 246789999999999877776
Q ss_pred hhhhhhhhhhhccccCCCcee----------------------eccCchhhHHHHHHHHHhhccccCCCC
Q 037594 230 EMREKTGRDMMRDKATYPKLV----------------------GIDGSKKHAKELIAEAKQELAYFDPTR 277 (295)
Q Consensus 230 ~~~GK~~~Dl~~gk~T~p~~~----------------------~le~a~~~~~~~~~~A~~~L~~l~~~~ 277 (295)
+.|...|++.+|.=. .++.--..++.+.+.|...+..+|...
T Consensus 157 ------~eD~~~gR~YLP~~~l~~~Gv~~edl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~ 220 (266)
T TIGR03464 157 ------GVDYRKGRVYLPRDDLARFGVSEEDLAAGRATPALRELMAFEVSRTRALLDRGAPLAARVDGRL 220 (266)
T ss_pred ------HHHHhcCCccCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhh
Confidence 445556666666321 122223346777777877777777543
No 22
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=71.69 E-value=0.4 Score=43.40 Aligned_cols=110 Identities=20% Similarity=0.173 Sum_probs=68.8
Q ss_pred ccccccceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCCh
Q 037594 150 EGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSP 229 (295)
Q Consensus 150 ~~~~~Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~ 229 (295)
..++.|...|+....- .|.+++...++.-+|++..+.+.+.. ..++. ......+.++|.|+|+.|=+.|+
T Consensus 94 ~~li~~~~~dl~~~~~-~t~~~L~~Y~~~vag~vg~l~~~~~~---~~~~~--~~~~~~a~~lG~alql~nilRd~---- 163 (267)
T PF00494_consen 94 LELIDGMEMDLEFTPY-ETFADLERYCYYVAGSVGLLLLQLLG---AHDPD--EAARDAARALGRALQLTNILRDI---- 163 (267)
T ss_dssp HHHHHHHHHCTT-S---SSHHHHHHHHHHHTHHHHHHHHHHHH---SSTSH--HHHHHHHHHHHHHHHHHHHHHTH----
T ss_pred HHHHHHhcccccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHhc---cccch--hhHHHHHHHHHHHHHHHHHHHHh----
Confidence 6778899899875432 57777777777778887776554432 11211 35788999999999999877776
Q ss_pred hhhhhhhhh-hhccccCCCcee-----------------------eccCchhhHHHHHHHHHhhccccCC
Q 037594 230 EMREKTGRD-MMRDKATYPKLV-----------------------GIDGSKKHAKELIAEAKQELAYFDP 275 (295)
Q Consensus 230 ~~~GK~~~D-l~~gk~T~p~~~-----------------------~le~a~~~~~~~~~~A~~~L~~l~~ 275 (295)
+.| +..|++-+|.=. .+..--..++.+.++|...+..+|+
T Consensus 164 ------~~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~ 227 (267)
T PF00494_consen 164 ------PEDALRRGRIYLPLDDLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPP 227 (267)
T ss_dssp ------HHH-HHTT---S-HHHHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--
T ss_pred ------HHHHHhcccccCCchhHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455 455665555322 1222334567778888888888844
No 23
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=67.01 E-value=5.6 Score=29.96 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.8
Q ss_pred CHHHHHHHhhhhhhhHHHHHHHh
Q 037594 198 NEEEIERMRNFGKYVGMAYQLWN 220 (295)
Q Consensus 198 ~~~~~~~l~~~g~~lG~afQi~D 220 (295)
.+...+.+-+||..+|-.||++=
T Consensus 14 Eet~~e~llRYGLf~GAIFQliC 36 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLIC 36 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999984
No 24
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=65.04 E-value=2 Score=39.25 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcccc---ccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccccccccccccc
Q 037594 76 AMSMACAIELLVTMAVIQDDLPCLDNDDL---RRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKNINSAVGSEGI 152 (295)
Q Consensus 76 ~~~~A~avEliH~asLIhDDI~~~D~~~~---RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~l~~~~~~~~~ 152 (295)
..-...++=++|.+.-+.+|+ .|-+.- |..+|-..-+...+.|...+-.+...++-...-++...+.-.+ ...
T Consensus 39 ~~l~~l~~~l~~~a~~~~Nd~--~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~ 114 (279)
T PRK12884 39 ALLGFLTAFFASGSANALNDY--FDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVI--LVS 114 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--hhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHH
Confidence 444566778999999999999 555432 5556665555556667666655555444332222211100000 000
Q ss_pred cccceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhh
Q 037594 153 AAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMR 232 (295)
Q Consensus 153 ~~Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~ 232 (295)
..+=.--...+. .+. +..+. .|..+.++...|....+......-.+.-+.--....+++..|+.|..+
T Consensus 115 ~~~~~Ys~~lK~--~~~--~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~----- 182 (279)
T PRK12884 115 VLGILYNWKLKE--YGL--IGNLY---VAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVEG----- 182 (279)
T ss_pred HHHHHHHHhhcc--ccc--hhHHH---HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhh-----
Confidence 000000000011 000 01111 011122232333322222221112233334444556777888888754
Q ss_pred hhhhhhhhccccCCCceeeccCchhhH
Q 037594 233 EKTGRDMMRDKATYPKLVGIDGSKKHA 259 (295)
Q Consensus 233 GK~~~Dl~~gk~T~p~~~~le~a~~~~ 259 (295)
|.+.|+.|+|+.+|-+++....
T Consensus 183 -----D~~~G~~Tl~v~~G~~~~~~~~ 204 (279)
T PRK12884 183 -----DRLRGARTLAILYGEKIAGRIA 204 (279)
T ss_pred -----HHHcCCeeechHhcHHHHHHHH
Confidence 5578999999999877665543
No 25
>PRK10581 geranyltranstransferase; Provisional
Probab=51.28 E-value=28 Score=32.35 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=54.3
Q ss_pred CCchhhhhhhhhhhhhhccchh-hHHHHHHHHHHHHHHHHHhhcCCCCCC------------ccccccCCCCCCcccchh
Q 037594 52 PGGKRLMSTLCIASCEMIGGSQ-SVAMSMACAIELLVTMAVIQDDLPCLD------------NDDLRRGKPSNHKVFGEA 118 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g~~~-~~~~~~A~avEliH~asLIhDDI~~~D------------~~~~RRG~pt~h~~~G~~ 118 (295)
..|..++..+ .+++.+.|.+. +....+...-+.+=.|+-|.||| +| ..+.+.|++|+-..+|..
T Consensus 181 KTa~L~~~~~-~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDi--lD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e 257 (299)
T PRK10581 181 KTGALIRAAV-RLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDI--LDVVGDTATLGKRQGADQQLGKSTYPALLGLE 257 (299)
T ss_pred hhHHHHHHHH-HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--ccccCChHHHCCCcchhhhcCCCCHHHHHHHH
Confidence 4555554322 22233334333 34455666778888899999999 77 245677888877777777
Q ss_pred hHHHhHhHHhHhhhhhhhhhh
Q 037594 119 TAILACQALHCLAMQHIAIIK 139 (295)
Q Consensus 119 ~Ail~gd~L~~~a~~~l~~l~ 139 (295)
.|....+-+...|.+.+..++
T Consensus 258 ~a~~~a~~~~~~A~~~l~~l~ 278 (299)
T PRK10581 258 QARKKARDLIDDARQSLDQLA 278 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 676666666777777777653
No 26
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=51.10 E-value=29 Score=32.05 Aligned_cols=59 Identities=15% Similarity=0.065 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhh
Q 037594 76 AMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHI 135 (295)
Q Consensus 76 ~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l 135 (295)
..-++.++=+.-.+.++.-++||+|.|. +.|+.|.-.++|.+.|....-.++..++-.+
T Consensus 162 ~~l~~~~~~~~~~a~~ii~~irDie~Dr-~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~ 220 (282)
T PRK13105 162 LWAVLAAFFLWGMASHAFGAVQDVVADR-EAGIASIATVLGARRTVRLAVGLYAAAAVLM 220 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHhHH-HcCCccchHHhcHHHHHHHHHHHHHHHHHHH
Confidence 3446677777788899999998777765 6899999999999999877777776665433
No 27
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=48.52 E-value=10 Score=35.72 Aligned_cols=67 Identities=24% Similarity=0.222 Sum_probs=44.9
Q ss_pred CCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 196 GGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 196 g~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
|.+.+....+..--+-+=.+..|.||+.| +++++.|++|+-..+|-..|.-.-.-+...|.+.+..+
T Consensus 60 g~~~~~~~~~A~avEllH~asLiHDDI~D-----------~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~ 126 (323)
T PRK10888 60 GYQGNAHVTIAALIEFIHTATLLHDDVVD-----------ESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSL 126 (323)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHccccc-----------CCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhC
Confidence 33444444555566777788899999976 46788999998888876555555555555555555443
No 28
>PRK13591 ubiA prenyltransferase; Provisional
Probab=47.44 E-value=9.1 Score=35.89 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=28.7
Q ss_pred HHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHH
Q 037594 215 AYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKE 261 (295)
Q Consensus 215 afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~ 261 (295)
+..+.+|+.|+.+ |..+|+.|+|+.+|.++|.....-
T Consensus 194 ~~~iindirDiEG----------Dr~~G~kTLPV~lG~~~A~~l~~~ 230 (307)
T PRK13591 194 INSCVYDFKDVKG----------DTLAGIKTLPVSLGEQKTRNLLLG 230 (307)
T ss_pred HHHHHHHhhhhHh----------HHHcCCeeEEEEECHHHHHHHHHH
Confidence 3457899999855 457899999999998888766543
No 29
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=46.17 E-value=9 Score=34.97 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=30.5
Q ss_pred hHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHH
Q 037594 212 VGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAK 260 (295)
Q Consensus 212 lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~ 260 (295)
+-...++..|+.|..+| .+.|+.|+|+.+|.++++....
T Consensus 173 ~~~~~~~~~d~~D~e~D----------~~~G~~Tlpv~lG~~~t~~~~~ 211 (285)
T PRK12872 173 KSFIREIVFDIKDIEGD----------RKSGLKTLPIVLGKERTLKFLL 211 (285)
T ss_pred HHHHHHHHHhcccchhH----------HHcCCcccchhcchHHHHHHHH
Confidence 35677889999998655 4679999999999887766543
No 30
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=44.05 E-value=30 Score=31.18 Aligned_cols=64 Identities=25% Similarity=0.251 Sum_probs=47.8
Q ss_pred HHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhccccC
Q 037594 200 EEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFD 274 (295)
Q Consensus 200 ~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~ 274 (295)
+....+...-+-+=.++-|.||+.| .++.+.|++|+-..++...|.....-+...|.+.+...+
T Consensus 39 ~~~~~la~aiEllh~asLIhDDI~D-----------~s~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~l~~~~ 102 (259)
T cd00685 39 EAALRLAAAIELLHTASLVHDDVMD-----------NSDLRRGKPTVHKVFGNATAILAGDYLLARAFELLARLG 102 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-----------CCcccCCCCcHHHHhCcccHHHHHHHHHHHHHHHHHhCC
Confidence 4445666677778889999999966 345688999998888877777777777777777776653
No 31
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=43.38 E-value=4.5 Score=37.13 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=59.0
Q ss_pred ccccccceecccCCCce--eeccccchhhhccc-cCeeeeeeeeeeEecC--CCHHHH--HHHhhhhhhhHHHHHHHhhh
Q 037594 150 EGIAAGQIMDINSEGKE--VSLSELNFIHRHKT-GKFIEASIVSGVIIGG--GNEEEI--ERMRNFGKYVGMAYQLWNDI 222 (295)
Q Consensus 150 ~~~~~Gq~~dl~~~~~~--~~~~~~~~i~~~KT-a~Lf~~~~~~ga~lag--~~~~~~--~~l~~~g~~lG~afQi~DD~ 222 (295)
...+.|+..+..+.... ++.++|..+- ..| |..+.+.+ +-...| .+++.. ..+.++-...+...-+.||+
T Consensus 139 ~~~~~a~~~e~~~~~~~~~psl~eYl~~R-~~~~g~~~~~~l--~~~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl 215 (303)
T cd00687 139 EDYFDAYIWEGKNRLNGHVPDVAEYLEMR-RFNIGADPCLGL--SEFIGGPEVPAAVRLDPVMRALEALASDAIALVNDI 215 (303)
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHHHHHh-hhcccccccHHH--HHHhcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 45556666665443322 7889998874 455 44332221 111112 233332 23677888888888999999
Q ss_pred hHhcCChhhhhhhhhhhhccc-cCCCcee------eccCchhhHHHHHHHHHhhc
Q 037594 223 VDVIGSPEMREKTGRDMMRDK-ATYPKLV------GIDGSKKHAKELIAEAKQEL 270 (295)
Q Consensus 223 lD~~~~~~~~GK~~~Dl~~gk-~T~p~~~------~le~a~~~~~~~~~~A~~~L 270 (295)
..+..+.. ..|. .+++.++ ..+.|.+.+.++++++.+.+
T Consensus 216 ~S~~KE~~---------~~g~~~N~V~vl~~~~g~s~~eA~~~~~~~~~~~~~~f 261 (303)
T cd00687 216 YSYEKEIK---------ANGEVHNLVKVLAEEHGLSLEEAISVVRDMHNERITQF 261 (303)
T ss_pred HhhHHHHH---------hCCccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 88853321 1233 4444443 34556666666655554444
No 32
>PLN00012 chlorophyll synthetase; Provisional
Probab=41.55 E-value=15 Score=35.37 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=31.9
Q ss_pred hhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHH
Q 037594 211 YVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAK 260 (295)
Q Consensus 211 ~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~ 260 (295)
-.++++-+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+-
T Consensus 263 l~~lai~ivnd~~Die~----------Dr~aG~~TLpV~~G~~~a~~l~~ 302 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEG----------DRALGLQSLPVAFGVETAKWICV 302 (375)
T ss_pred HHHHHHHHHhhhcchhh----------HHHcCCcccceeechHHHHHHHH
Confidence 47788899999988754 55789999999999887766543
No 33
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=41.48 E-value=13 Score=34.77 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=45.0
Q ss_pred CCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 196 GGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 196 g~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
|.+.+....+...-+-+=.|.-|.||++| .++++.|++|....+|-..|.-...-+...|.+.+..+
T Consensus 59 ~~~~~~~~~~A~aiEliH~asLiHDDI~D-----------~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~ 125 (319)
T TIGR02748 59 DYDLDAIKHVAVALELIHMASLVHDDVID-----------DADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEI 125 (319)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccccC-----------CCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhC
Confidence 44444444555566677788899999977 35678899988887776555555555566666665544
No 34
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=39.77 E-value=16 Score=34.36 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=43.5
Q ss_pred HHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhccccC
Q 037594 204 RMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFD 274 (295)
Q Consensus 204 ~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~ 274 (295)
.+...-+-+=.+.=|.||++| .+|++.|++|....++-..|--.-.-+...|.+.+...+
T Consensus 70 ~~aaavEliH~~SLiHDDvmD-----------~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~ 129 (322)
T COG0142 70 DLAAAIELIHTASLIHDDLMD-----------DDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLG 129 (322)
T ss_pred HHHHHHHHHHHHHHHHhhccc-----------CCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444555566778999955 478899999999999877666666677777777777654
No 35
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=39.63 E-value=14 Score=34.20 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=33.0
Q ss_pred hHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHH
Q 037594 212 VGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELI 263 (295)
Q Consensus 212 lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~ 263 (295)
...++.+.+|+.|+.+| -++||.|+|+.+|.+++...+.-..
T Consensus 172 ~~~a~~ii~~irDie~D----------r~~G~~Tlpv~lG~~~a~~~~~~l~ 213 (282)
T PRK13105 172 WGMASHAFGAVQDVVAD----------REAGIASIATVLGARRTVRLAVGLY 213 (282)
T ss_pred HHHHHHHHHhCcchHhH----------HHcCCccchHHhcHHHHHHHHHHHH
Confidence 36688999999998655 4679999999999888877655443
No 36
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=38.34 E-value=20 Score=32.86 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHH
Q 037594 213 GMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKE 261 (295)
Q Consensus 213 G~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~ 261 (295)
..+..+.+|+.|+.+ |.+.|+.|+|+.+|-++++....-
T Consensus 174 ~~~i~~~nd~~D~~~----------D~~~G~~Tl~v~lG~~~a~~l~~~ 212 (283)
T TIGR01476 174 AHGIMTLNDFKSVEG----------DRQLGLRSLPVMIGVKRAAIVAVT 212 (283)
T ss_pred HHHHHHHHhccchhh----------HHHcCCcCcceEEcHHHHHHHHHH
Confidence 344678889888754 557899999999998877765443
No 37
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=33.41 E-value=1e+02 Score=28.25 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhh
Q 037594 75 VAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132 (295)
Q Consensus 75 ~~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~ 132 (295)
...-++..+-++-...++..|++|+++|. +.|+.|.-.++|.+.+...-..++..++
T Consensus 169 ~~~~~~l~~~l~~~~~~~~n~~~D~~~D~-~~G~~Tl~v~lG~~~a~~~~~~l~~~~~ 225 (293)
T PRK06080 169 AVFLPALPCGLLIGAVLLANNIRDIETDR-ENGKNTLAVRLGDKNARRLHAALLALAY 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHH-HcCCeeEEeeECcHhHHHHHHHHHHHHH
Confidence 45556667777778888889997766665 6899999999999977655555544444
No 38
>PLN02878 homogentisate phytyltransferase
Probab=32.08 E-value=1e+02 Score=28.51 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhh
Q 037594 84 ELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQ 133 (295)
Q Consensus 84 EliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~ 133 (295)
-+.-.+-.+..|+||+++|. ..|..|.-.++|.+.+....-.++..++-
T Consensus 166 ~~f~~~i~i~KDi~DieGD~-~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~ 214 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDR-IFGIRSFSVRLGQKRVFWLCVNLLEMAYA 214 (280)
T ss_pred HHHHHHHHHHhhCcCchhHH-HCCCceechhhChHHHHHHHHHHHHHHHH
Confidence 33344556889998888775 47899999999999887777777776665
No 39
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=30.35 E-value=12 Score=33.81 Aligned_cols=68 Identities=26% Similarity=0.265 Sum_probs=49.2
Q ss_pred CCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhccccC
Q 037594 196 GGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFD 274 (295)
Q Consensus 196 g~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~ 274 (295)
+.+.+....+...-+-+=.++-|.||+.| .++++.|++|.-..++...|.-...-++..|.+.+..++
T Consensus 29 ~~~~~~~~~~a~avEliH~asLIhDDI~D-----------~s~~RRG~pt~~~~~G~~~Ail~gd~ll~~a~~~l~~~~ 96 (260)
T PF00348_consen 29 GGDPEKAIPLAAAVELIHAASLIHDDIID-----------NSDLRRGKPTVHKKFGNAIAILAGDYLLALAFELLARLG 96 (260)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------TCSEETTEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhhc-----------ccccCCCCccccccccccchhhhchHHHHHHHHHHHHhh
Confidence 45566666777788888899999999977 356788888887777766666566666666666665544
No 40
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=29.10 E-value=99 Score=28.74 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhh
Q 037594 79 MACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLA 131 (295)
Q Consensus 79 ~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a 131 (295)
++..+=+.-.+.++.+|++|+++|. |.|++|.-.++|.+.+......++..+
T Consensus 188 ~~~~~~l~~~~i~~~n~~~D~e~D~-~~G~~Tlpv~lG~~~a~~~~~~l~~~~ 239 (306)
T TIGR02056 188 LTLIYSIAGLGIAIVNDFKSVEGDR-ALGLQSLPVAFGIETAAWICVGAIDIF 239 (306)
T ss_pred HHHHHHHHHHHHHHHHHccChHHHH-HcCCcCcchhcChHHHHHHHHHHHHHH
Confidence 3333445556667788996555554 789999999999998877666554443
No 41
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=28.63 E-value=69 Score=29.55 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHH
Q 037594 84 ELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAIL 122 (295)
Q Consensus 84 EliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail 122 (295)
=++..+.++..++||+++|. |.|++|.-.++|.+.+..
T Consensus 175 ~l~~~~~~~in~i~Die~D~-~aGi~Tlav~lG~~~a~~ 212 (282)
T PRK12875 175 WLWAMGMHTFSAIPDIEPDR-AAGIRTTATVLGERRTYA 212 (282)
T ss_pred HHHHHHHHHHHhccCHHHHH-HcCCccchhhccHhhHHH
Confidence 36666778888997666554 799999999999997764
No 42
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=27.96 E-value=32 Score=32.05 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccc---ccCCCCCCcccchhhHHHhHhHHhHhhh
Q 037594 80 ACAIELLVTMAVIQDDLPCLDNDDL---RRGKPSNHKVFGEATAILACQALHCLAM 132 (295)
Q Consensus 80 A~avEliH~asLIhDDI~~~D~~~~---RRG~pt~h~~~G~~~Ail~gd~L~~~a~ 132 (295)
..+.=++|.++-++.|+ .|.+.- .|.+|...-....+.+...+-.++..++
T Consensus 60 ll~~~l~~~~~n~~NDy--~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 60 LLSGPCLTGYTQTINDF--YDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHHhH--hhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 35668999999999999 665432 3456666656667777766655554443
No 43
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=26.09 E-value=1.1e+02 Score=28.41 Aligned_cols=56 Identities=21% Similarity=0.152 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhh
Q 037594 76 AMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132 (295)
Q Consensus 76 ~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~ 132 (295)
..-++...-+...+.++.+|++|+++| .|.|++|.-..+|.+.+....-+++..++
T Consensus 191 ~~l~~~~~~l~~~~~~~~~d~~D~e~D-~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~ 246 (314)
T PRK07566 191 IVILALLYSLGAHGIMTLNDFKSVEGD-RQLGLRSLPVVFGEKNAARIACVVIDLFQ 246 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhH-HHcCCcccceeEcHHHHHHHHHHHHHHHH
Confidence 334455555566666778888555444 45799999999999987766555444443
No 44
>PLN02878 homogentisate phytyltransferase
Probab=25.89 E-value=42 Score=31.08 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=36.4
Q ss_pred hhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHH
Q 037594 208 FGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAK 267 (295)
Q Consensus 208 ~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~ 267 (295)
|..-+..+.-+..|+.|+.||. ..|..|+|+.+|-+++...+--...-|.
T Consensus 164 f~~~f~~~i~i~KDi~DieGD~----------~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY 213 (280)
T PLN02878 164 FMCFFSVVIALFKDIPDVEGDR----------IFGIRSFSVRLGQKRVFWLCVNLLEMAY 213 (280)
T ss_pred HHHHHHHHHHHHhhCcCchhHH----------HCCCceechhhChHHHHHHHHHHHHHHH
Confidence 4444444555899999987764 5799999999998888887765554444
No 45
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=25.85 E-value=1.7e+02 Score=26.69 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHh
Q 037594 79 MACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALH 128 (295)
Q Consensus 79 ~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~ 128 (295)
++..+-+.-.+.+..+|++|+++|. +.|++|.-..+|.+.+...--.++
T Consensus 166 ~~~~~~l~~~~i~~~nd~~D~~~D~-~~G~~Tl~v~lG~~~a~~l~~~l~ 214 (283)
T TIGR01476 166 VALIYSLGAHGIMTLNDFKSVEGDR-QLGLRSLPVMIGVKRAAIVAVTTI 214 (283)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHH-HcCCcCcceEEcHHHHHHHHHHHH
Confidence 3445555666678889996555544 679999999999997766544433
No 46
>CHL00151 preA prenyl transferase; Reviewed
Probab=25.68 E-value=81 Score=29.57 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=28.1
Q ss_pred CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 037594 52 PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLD 100 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D 100 (295)
..|..++- -|.+++.+.|.+.+....+...-+-+=.|+-|.||+ +|
T Consensus 174 KTa~L~~~-~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDi--lD 219 (323)
T CHL00151 174 KTASLIAA-SCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDV--LD 219 (323)
T ss_pred HHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--hh
Confidence 34445432 233344444555555555666667777888999999 66
No 47
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=25.19 E-value=1e+02 Score=28.81 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhh
Q 037594 79 MACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132 (295)
Q Consensus 79 ~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~ 132 (295)
++..+-+.-.+-.+.-|+||+++|. +.|+.|.-..+|.+.+....-.++..++
T Consensus 187 ~~~~~~~~~~~~~l~~di~D~egD~-~~Gi~Tlav~lG~~~a~~l~~~ll~~~y 239 (308)
T PRK12887 187 LTLFVLVFTFAIAIFKDIPDMEGDR-QYQITTFTLRLGKQAVFKLSCWVLTACY 239 (308)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHH-HcCCcchhHHHhHHHHHHHHHHHHHHHH
Confidence 3444555556667778997777665 6899999999999988766655555444
No 48
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=25.12 E-value=88 Score=29.03 Aligned_cols=111 Identities=23% Similarity=0.280 Sum_probs=66.2
Q ss_pred ccccccceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCCh
Q 037594 150 EGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSP 229 (295)
Q Consensus 150 ~~~~~Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~ 229 (295)
..++.|...|+..... .++++++.-+.+=.|....++. .+++-.+ ..........+|.|+|+.|=+.|+
T Consensus 106 ~~~~da~~~Dl~~~~y-~~~~eL~~Yc~~vAg~vG~l~~---~Il~~~~---~~~~~~~a~~lG~A~QlvNilRdv---- 174 (288)
T COG1562 106 PALIDAMRMDLDRTRY-LDFEELEEYCYGVAGAVGLLLA---RILGPDK---DAATRAYARGLGLALQLVNILRDV---- 174 (288)
T ss_pred HHHHHHHHHHhhhccc-cCHHHHHHHHHHhHHHHHHHHH---HHhCccc---chhhHHHHHHHHHHHHHHHHHHHh----
Confidence 6788899898876543 3344444444333333333322 2222211 123344455599999999887776
Q ss_pred hhhhhhhhhhhccccCCCce----ee------------------ccCchhhHHHHHHHHHhhccccCCCC
Q 037594 230 EMREKTGRDMMRDKATYPKL----VG------------------IDGSKKHAKELIAEAKQELAYFDPTR 277 (295)
Q Consensus 230 ~~~GK~~~Dl~~gk~T~p~~----~~------------------le~a~~~~~~~~~~A~~~L~~l~~~~ 277 (295)
+.|...|++=+|.= ++ ++.--..++++...|...+..+|...
T Consensus 175 ------~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ar~~~~~a~~~~~~lp~~~ 238 (288)
T COG1562 175 ------GEDRRRGRVYLPAEELARFGVSEADLLAGRVDDAFRELMRFEADRARDHLAEARRGLPALPGRA 238 (288)
T ss_pred ------HHHHhCCcccCCHHHHHHhCCCHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhCCccc
Confidence 67778888888821 12 12223457788888888888887643
No 49
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.15 E-value=66 Score=35.07 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=34.7
Q ss_pred ccchhhhhhhhHHhHHHHhhhcC-----CCC-ChHhHHHHhhhcC-CCchhhhhhhhh
Q 037594 13 FFQVNEYKALKAKQINEALDEAV-----PLP-HPAILHEAMRYSL-PGGKRLMSTLCI 63 (295)
Q Consensus 13 ~~~~~~~l~~~~~~i~~~l~~~~-----~~~-~~~~l~~~~~~~~-~~GK~lRp~l~~ 63 (295)
||..+.+.+.....|...|...- ... ..+...+-++|.+ +||||+||+=-+
T Consensus 995 F~~~F~~va~~Id~IYK~Ltnt~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~m~~L 1052 (1141)
T KOG0018|consen 995 FMACFEHVADNIDRIYKELTNTEGQAYLGLENPEEPYLDGIKYHCMPPGKRFRPMDNL 1052 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccceeecCCCCCcchhcCccccccCCccccCchhhc
Confidence 55666677777777777776321 111 1234777889999 999999998554
No 50
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=23.09 E-value=49 Score=30.11 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccc---cccCCCCCCcccchhhHHHhHhHHhHhhhh
Q 037594 79 MACAIELLVTMAVIQDDLPCLDNDD---LRRGKPSNHKVFGEATAILACQALHCLAMQ 133 (295)
Q Consensus 79 ~A~avEliH~asLIhDDI~~~D~~~---~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~ 133 (295)
...++=+.|.+.-+..|+ .|-+. .|+.+|-..-+...+.|...+-.+...+.-
T Consensus 42 ~~~~~~~~~~a~~~~Nd~--~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~~ 97 (277)
T PRK12883 42 IFLVVYLGCSGGNTINDY--FDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLA 97 (277)
T ss_pred HHHHHHHHHHHHhHHHhh--hhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 344666778899999998 55433 355666666666677777766666555543
No 51
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=22.19 E-value=45 Score=30.78 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=29.1
Q ss_pred hhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhH
Q 037594 211 YVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHA 259 (295)
Q Consensus 211 ~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~ 259 (295)
-+..++.+.+++.|+. .|.+.||.|+|+.+|.+.+...+
T Consensus 176 l~~~~~~~in~i~Die----------~D~~aGi~Tlav~lG~~~a~~~~ 214 (282)
T PRK12875 176 LWAMGMHTFSAIPDIE----------PDRAAGIRTTATVLGERRTYAYC 214 (282)
T ss_pred HHHHHHHHHHhccCHH----------HHHHcCCccchhhccHhhHHHHH
Confidence 4456667777777764 56678999999999988776543
No 52
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=21.55 E-value=1.8e+02 Score=26.36 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhH
Q 037594 76 AMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQA 126 (295)
Q Consensus 76 ~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~ 126 (295)
..-++..+=+......+.-|++|+|+| .+.|.+|.-..+|.+.+....-.
T Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~D~e~D-~~~G~~Tl~v~~G~~~~~~~~~~ 206 (279)
T PRK12884 157 VILLAAMAFLMTLGREIMKDIEDVEGD-RLRGARTLAILYGEKIAGRIAAA 206 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhH-HHcCCeeechHhcHHHHHHHHHH
Confidence 333443343444444555677544443 46899999999999988765543
No 53
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=20.58 E-value=2.1e+02 Score=25.94 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhhhhhhhhcc-chhhHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhh
Q 037594 59 STLCIASCEMIG-GSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAM 132 (295)
Q Consensus 59 p~l~~~~~~~~g-~~~~~~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~ 132 (295)
+...+..+-..+ ........++..+=+.-.+..+..|++|+++|. +.|.||.-.++|.+.+....-.+...++
T Consensus 141 g~~~~~g~~~~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~-~~G~~tlpv~~G~~~t~~~~~~~~~~~~ 214 (276)
T PRK12882 141 GSTFLFGGAAVGTEGLLALLVLFALAALATLAREIIKDVEDIEGDR-AEGARTLPILIGVRKALYVAAAFLLVAV 214 (276)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH-HcCCccccHHhhHHHHHHHHHHHHHHHH
No 54
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=20.16 E-value=82 Score=27.60 Aligned_cols=178 Identities=17% Similarity=0.143 Sum_probs=0.0
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccc--CCCCC---CcccchhhHHHhHhHHhHhhhhh
Q 037594 60 TLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRR--GKPSN---HKVFGEATAILACQALHCLAMQH 134 (295)
Q Consensus 60 ~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D~~~~RR--G~pt~---h~~~G~~~Ail~gd~L~~~a~~~ 134 (295)
...+..+.-...+.........++=++|.+.-+.||+ .|-+.-|. ++|.- ..+...+.+...+-.++..+.-.
T Consensus 9 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Nd~--~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l 86 (257)
T PF01040_consen 9 LAGLALASGGPFNWPIFLLGLLAVFLLQLAVYLLNDY--FDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLL 86 (257)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhCh--hhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhccccccccccccccccceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCC-HHHHHHHhhhhhhhH
Q 037594 135 IAIIKAKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGN-EEEIERMRNFGKYVG 213 (295)
Q Consensus 135 l~~l~~~~l~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~-~~~~~~l~~~g~~lG 213 (295)
....+...+.-.+ .....|=... .+....+.--+..-=.|..+.....+|+...+.+ ....-.+.-+.--++
T Consensus 87 ~~~~~~~~~~~~~--~~~~~~~~Ys-----~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (257)
T PF01040_consen 87 ALLLGPWFLLILL--LGFLLGLLYS-----PPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLI 159 (257)
T ss_pred HHhcCchhHHHHH--HHHHHHHHHh-----hhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCch
Q 037594 214 MAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSK 256 (295)
Q Consensus 214 ~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~ 256 (295)
......+|+.|+ .+|.+.|+.|+|+.+|.+++.
T Consensus 160 ~~~~~~~~~~D~----------~~D~~~g~~Tl~v~~G~~~~~ 192 (257)
T PF01040_consen 160 FAIMFFNDIRDI----------EGDRKAGRRTLPVLLGEKKAR 192 (257)
T ss_pred HHHHHHHHhhhH----------HHHHHcCCcchHHHHHHHHHH
Done!