Query 037594
Match_columns 295
No_of_seqs 200 out of 1292
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 03:27:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f62_A Geranyltranstransferase 100.0 5E-72 1.7E-76 519.1 4.3 280 13-293 2-295 (317)
2 3lsn_A Geranyltranstransferase 100.0 1.2E-71 4E-76 514.8 2.7 279 14-293 1-296 (304)
3 3ts7_A Geranyltranstransferase 100.0 3.1E-71 1.1E-75 515.1 5.2 279 14-293 7-302 (324)
4 3m0g_A Farnesyl diphosphate sy 100.0 1.1E-70 3.7E-75 506.8 0.4 276 14-293 1-289 (297)
5 3pde_A Farnesyl-diphosphate sy 100.0 5.3E-71 1.8E-75 510.6 -2.0 279 15-294 7-301 (309)
6 3uca_A Geranyltranstransferase 100.0 4E-70 1.4E-74 507.7 2.3 277 16-293 33-324 (324)
7 3p8l_A Geranyltranstransferase 100.0 1.7E-70 5.9E-75 506.3 -0.3 276 16-291 10-302 (302)
8 1rqj_A Geranyltranstransferase 100.0 3.6E-70 1.2E-74 504.7 1.4 280 14-293 1-299 (299)
9 3lom_A Geranyltranstransferase 100.0 6.4E-70 2.2E-74 504.7 2.9 276 16-293 9-303 (313)
10 3p8r_A Geranyltranstransferase 100.0 3.7E-70 1.3E-74 504.5 -0.1 275 18-293 11-302 (302)
11 2h8o_A Geranyltranstransferase 100.0 8.3E-70 2.8E-74 508.3 1.9 279 14-293 37-335 (335)
12 1rtr_A Geranyltranstransferase 100.0 1.9E-69 6.7E-74 499.9 0.5 271 23-293 9-293 (301)
13 3llw_A Geranyltranstransferase 100.0 8.2E-69 2.8E-73 496.9 1.0 278 14-293 6-305 (311)
14 3oyr_A Trans-isoprenyl diphosp 100.0 2.5E-67 8.5E-72 493.5 2.7 278 10-292 21-344 (345)
15 3mzv_A Decaprenyl diphosphate 100.0 1.1E-66 3.7E-71 488.9 0.1 280 10-293 8-333 (341)
16 2ftz_A Geranyltranstransferase 100.0 2.3E-67 7.8E-72 481.9 -5.1 265 20-291 11-284 (284)
17 3npk_A Geranyltranstransferase 100.0 7.1E-66 2.4E-70 473.2 0.6 267 24-292 6-286 (291)
18 2j1p_A Geranylgeranyl pyrophos 100.0 5.1E-65 1.8E-69 468.9 4.5 267 14-293 11-293 (293)
19 1wy0_A Geranylgeranyl pyrophos 100.0 1.8E-65 6.2E-70 481.6 0.5 275 15-293 6-342 (342)
20 3lmd_A Geranylgeranyl pyrophos 100.0 2.2E-65 7.6E-70 482.3 0.3 274 15-293 35-352 (360)
21 4dhd_A Polyprenyl synthetase; 100.0 2.4E-65 8.1E-70 482.7 0.1 275 13-293 3-336 (358)
22 3rmg_A Octaprenyl-diphosphate 100.0 3.3E-65 1.1E-69 477.8 -0.2 274 14-293 7-326 (334)
23 3pko_A Geranylgeranyl pyrophos 100.0 9.7E-65 3.3E-69 474.7 0.6 274 14-293 15-334 (334)
24 3ipi_A Geranyltranstransferase 100.0 6.2E-65 2.1E-69 468.0 -2.1 271 14-295 3-286 (295)
25 3apz_A Geranyl diphosphate syn 100.0 6.3E-64 2.2E-68 472.1 2.7 273 16-293 10-348 (348)
26 3aqb_B Component B of hexapren 100.0 2.9E-64 9.8E-69 470.4 -0.5 273 16-293 6-325 (325)
27 3nf2_A Putative polyprenyl syn 100.0 7.4E-64 2.5E-68 471.3 -2.4 273 16-293 5-344 (352)
28 1wmw_A Geranylgeranyl diphosph 100.0 1.3E-62 4.4E-67 460.1 -4.2 266 20-293 5-330 (330)
29 3lk5_A Geranylgeranyl pyrophos 100.0 1.8E-61 6.2E-66 459.0 -3.6 270 20-293 18-373 (380)
30 3tc1_A Octaprenyl pyrophosphat 100.0 6.5E-61 2.2E-65 445.2 -1.3 261 21-290 3-308 (315)
31 1v4e_A Octoprenyl-diphosphate 100.0 2.5E-61 8.6E-66 445.3 -4.1 225 20-256 9-240 (299)
32 2qis_A Farnesyl pyrophosphate 100.0 2.6E-60 8.8E-65 450.9 2.0 275 15-293 34-374 (374)
33 2azj_A Geranylgeranyl pyrophos 100.0 9.2E-61 3.1E-65 439.3 -1.3 263 14-293 9-281 (289)
34 1yhl_A Farnesyl pyrophosphate 100.0 3.9E-60 1.3E-64 448.5 -1.8 277 13-293 1-362 (362)
35 2q80_A Geranylgeranyl pyrophos 100.0 1.3E-60 4.4E-65 441.1 -5.1 250 33-293 4-297 (301)
36 1uby_A FPS, farnesyl diphospha 100.0 1.3E-59 4.4E-64 445.1 1.4 274 16-293 28-367 (367)
37 2e8v_A Geranylgeranyl pyrophos 100.0 6.8E-60 2.3E-64 443.1 -2.8 261 25-290 8-339 (340)
38 3mav_A Farnesyl pyrophosphate 100.0 2.7E-59 9.3E-64 447.2 1.2 275 11-292 31-391 (395)
39 2ihi_A Pyrophosphate synthase; 100.0 2.8E-59 9.6E-64 445.8 -0.6 275 14-292 34-395 (395)
40 3dyh_A Farnesyl pyrophosphate 100.0 3.9E-59 1.4E-63 444.6 -0.8 274 16-293 29-390 (390)
41 2q58_A Fragment, farnesyl pyro 100.0 2.4E-58 8.4E-63 436.6 -2.4 271 14-293 26-360 (368)
42 2her_A Fragment, farnesyl pyro 100.0 2.4E-58 8.1E-63 435.0 -4.6 270 15-292 27-355 (368)
43 3kra_B Geranyl diphosphate syn 100.0 5.6E-56 1.9E-60 404.8 7.5 242 17-285 2-258 (274)
44 4fp4_A Polyprenyl synthetase; 100.0 8.6E-56 2.9E-60 404.0 -2.3 217 13-242 3-226 (285)
45 3qkc_B Geranyl diphosphate syn 100.0 1.6E-53 5.5E-58 388.6 5.4 241 15-288 5-259 (273)
46 3acx_A Dehydrosqualene synthas 69.5 3.4 0.00012 36.8 3.7 111 150-277 111-243 (293)
47 4f62_A Geranyltranstransferase 68.7 3.5 0.00012 37.5 3.6 86 52-140 180-278 (317)
48 4hd1_A Squalene synthase HPNC; 67.7 3.8 0.00013 36.6 3.6 109 150-276 107-237 (294)
49 3lom_A Geranyltranstransferase 63.6 5.4 0.00018 36.1 3.8 85 52-140 188-286 (313)
50 3lsn_A Geranyltranstransferase 63.4 3.9 0.00013 36.9 2.8 86 52-140 181-279 (304)
51 3ts7_A Geranyltranstransferase 62.4 4.6 0.00016 36.8 3.1 86 52-140 187-285 (324)
52 2h8o_A Geranyltranstransferase 59.8 5.6 0.00019 36.3 3.2 85 52-139 221-317 (335)
53 3uca_A Geranyltranstransferase 59.2 4.8 0.00016 36.7 2.6 85 52-139 210-306 (324)
54 1rtr_A Geranyltranstransferase 58.7 4.8 0.00016 36.2 2.5 85 52-139 177-273 (301)
55 3m0g_A Farnesyl diphosphate sy 58.6 10 0.00036 33.9 4.7 83 52-140 178-272 (297)
56 3p8r_A Geranyltranstransferase 57.9 4.5 0.00015 36.4 2.2 86 52-140 187-285 (302)
57 3p8l_A Geranyltranstransferase 57.5 5.8 0.0002 35.7 2.8 85 52-139 185-281 (302)
58 3vj8_A Squalene synthase; farn 53.0 5.6 0.00019 36.4 2.0 86 150-248 121-206 (343)
59 3pde_A Farnesyl-diphosphate sy 50.1 9.5 0.00033 34.4 3.0 83 52-137 184-278 (309)
60 4fp4_A Polyprenyl synthetase; 48.9 2.9 9.9E-05 37.4 -0.6 66 198-274 66-131 (285)
61 3mzv_A Decaprenyl diphosphate 42.8 5 0.00017 36.7 -0.1 67 196-273 69-135 (341)
62 1rqj_A Geranyltranstransferase 42.1 9.6 0.00033 34.1 1.7 86 52-140 181-279 (299)
63 3lmd_A Geranylgeranyl pyrophos 41.7 5.2 0.00018 37.0 -0.2 66 197-273 92-157 (360)
64 3nf2_A Putative polyprenyl syn 38.1 5.7 0.0002 36.5 -0.5 67 196-273 70-136 (352)
65 3oyr_A Trans-isoprenyl diphosp 36.5 7.1 0.00024 35.8 -0.1 65 198-273 83-147 (345)
66 3tc1_A Octaprenyl pyrophosphat 36.1 33 0.0011 30.8 4.3 60 204-274 61-120 (315)
67 1wy0_A Geranylgeranyl pyrophos 35.8 7.6 0.00026 35.4 -0.0 65 198-273 64-128 (342)
68 3rmg_A Octaprenyl-diphosphate 35.5 6.2 0.00021 36.0 -0.7 66 196-272 63-128 (334)
69 3aqb_B Component B of hexapren 34.3 9.2 0.00031 34.6 0.3 63 200-273 64-126 (325)
70 2q80_A Geranylgeranyl pyrophos 34.2 30 0.001 30.9 3.6 66 197-273 42-107 (301)
71 3pko_A Geranylgeranyl pyrophos 34.0 9.4 0.00032 34.8 0.3 66 197-273 73-138 (334)
72 3ipi_A Geranyltranstransferase 33.1 26 0.00088 31.3 3.0 85 52-139 166-264 (295)
73 1wmw_A Geranylgeranyl diphosph 32.0 10 0.00036 34.3 0.2 67 196-273 55-121 (330)
74 2ftz_A Geranyltranstransferase 30.3 7.9 0.00027 34.5 -0.9 67 196-273 62-130 (284)
75 2e8v_A Geranylgeranyl pyrophos 30.0 34 0.0012 31.0 3.3 67 197-274 57-123 (340)
76 1v4e_A Octoprenyl-diphosphate 25.5 11 0.00038 33.7 -0.9 63 200-273 61-123 (299)
77 4dhd_A Polyprenyl synthetase; 24.9 7.2 0.00025 35.9 -2.2 60 200-270 65-124 (358)
78 2q58_A Fragment, farnesyl pyro 24.7 16 0.00055 33.6 0.1 38 205-253 100-137 (368)
79 3kra_B Geranyl diphosphate syn 24.4 17 0.00058 32.0 0.2 68 196-273 56-123 (274)
80 2azj_A Geranylgeranyl pyrophos 24.0 12 0.00042 33.3 -0.8 65 198-273 67-132 (289)
81 3apz_A Geranyl diphosphate syn 21.1 67 0.0023 29.0 3.5 58 205-273 92-149 (348)
No 1
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=5e-72 Score=519.11 Aligned_cols=280 Identities=35% Similarity=0.606 Sum_probs=235.8
Q ss_pred ccchhhhhhhhHHhHHHHhhhcCCCCC-hHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 037594 13 FFQVNEYKALKAKQINEALDEAVPLPH-PAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMA 90 (295)
Q Consensus 13 ~~~~~~~l~~~~~~i~~~l~~~~~~~~-~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~as 90 (295)
||+|..++++..+.|++.|.+.++... |+.+.++++|.+ .||||+||.|++++++++|++.+.+.++|++|||||+||
T Consensus 2 ~m~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH~aS 81 (317)
T 4f62_A 2 VMNLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYS 81 (317)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999997632 678999999999 999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhc-c---------ccccccccccccccceecc
Q 037594 91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKA-K---------NINSAVGSEGIAAGQIMDI 160 (295)
Q Consensus 91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~-~---------~l~~~~~~~~~~~Gq~~dl 160 (295)
||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++... + .++++++..+|+.||.+|+
T Consensus 82 LIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl 161 (317)
T 4f62_A 82 LIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDL 161 (317)
T ss_dssp HHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred HHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999998532 1 1455554467999999999
Q ss_pred cCCCceeeccccchhhhccccCeeeeeeeeeeEecC-CCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhh
Q 037594 161 NSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGG-GNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRD 238 (295)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~D 238 (295)
.+....+++++|..|+.+|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|| .|+|
T Consensus 162 ~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~D 241 (317)
T 4f62_A 162 SSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSD 241 (317)
T ss_dssp HTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred hccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchH
Confidence 987655889999999999999999999999999999 79999999999999999999999999999999999999 9999
Q ss_pred hhccccCCCceeeccCchhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccCC
Q 037594 239 MMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 239 l~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (295)
+++||+|||+++|+++|++.++++.++|++.|+.||+ .++.|.++++|+++|.+
T Consensus 242 l~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 242 AEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD-KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHC---
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999986 57899999999999986
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.2e-71 Score=514.79 Aligned_cols=279 Identities=38% Similarity=0.658 Sum_probs=246.4
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCCC--hHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLPH--PAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMA 90 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~~--~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~as 90 (295)
|+|..+++...+.|++.|.+.++... |+.+.++++|.+ .||||+||.|++++++++|++.+.+.++|++|||||+||
T Consensus 1 m~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~as 80 (304)
T 3lsn_A 1 MSLTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYS 80 (304)
T ss_dssp -CHHHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999997643 678999999999 999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhc----c--------cccccccccccccccee
Q 037594 91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKA----K--------NINSAVGSEGIAAGQIM 158 (295)
Q Consensus 91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~----~--------~l~~~~~~~~~~~Gq~~ 158 (295)
||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++... + .++++++..+|+.||.+
T Consensus 81 LIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~l 160 (304)
T 3lsn_A 81 LVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAI 160 (304)
T ss_dssp HHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHH
Confidence 99999999999999999999999999999999999999999999998641 1 14555544569999999
Q ss_pred cccCCCceeeccccchhhhccccCeeeeeeeeeeEecCC-CHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hh
Q 037594 159 DINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGG-NEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TG 236 (295)
Q Consensus 159 dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~ 236 (295)
|+.+..+.+++++|..|+++|||+||++||++|++++|+ +++..+.+++||.++|+||||+||++|++++++.+|| .|
T Consensus 161 Dl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g 240 (304)
T 3lsn_A 161 DLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQG 240 (304)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcc
Confidence 999887668899999999999999999999999999999 8888999999999999999999999999999999999 99
Q ss_pred hhhhccccCCCceeeccCchhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccCC
Q 037594 237 RDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 237 ~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (295)
+|+++||+|||+++++++|++.++++.++|++.|+.||+ .++.|.+|++|+++|.+
T Consensus 241 ~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 241 ADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDA-AAEPLRELARYIVERRS 296 (304)
T ss_dssp -------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCG-GGHHHHHHHHHHHC---
T ss_pred cHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999986 57899999999999976
No 3
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=3.1e-71 Score=515.14 Aligned_cols=279 Identities=36% Similarity=0.600 Sum_probs=247.0
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCC--ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLP--HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMA 90 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~as 90 (295)
++|..+++...+.|++.|.+.++.. .|+.+.++++|.+ .||||+||.|++++++++|++.+.+.++|++|||||+||
T Consensus 7 ~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~avEliH~aS 86 (324)
T 3ts7_A 7 RSLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIHVYS 86 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999763 3678999999999 999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhh--c--c----c----ccccccccccccccee
Q 037594 91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIK--A--K----N----INSAVGSEGIAAGQIM 158 (295)
Q Consensus 91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~--~--~----~----l~~~~~~~~~~~Gq~~ 158 (295)
||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.. . + . ++++.|..+|+.||.+
T Consensus 87 LIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~l 166 (324)
T 3ts7_A 87 LIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAI 166 (324)
T ss_dssp HHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999863 1 1 1 4555444789999999
Q ss_pred cccCCCceeeccccchhhhccccCeeeeeeeeeeEecC-CCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hh
Q 037594 159 DINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGG-GNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TG 236 (295)
Q Consensus 159 dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~ 236 (295)
|+.+....+++++|.+|+++|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|| .|
T Consensus 167 Dl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g 246 (324)
T 3ts7_A 167 DLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRG 246 (324)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------
T ss_pred HHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcc
Confidence 99988666889999999999999999999999999999 89999999999999999999999999999999999999 99
Q ss_pred hhhhccccCCCceeeccCchhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccCC
Q 037594 237 RDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 237 ~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (295)
+|+++||+|||+++|+++|++.+++++++|++.|+.||+. ++.|.+|++|+++|.+
T Consensus 247 ~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~-~~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 247 KDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGPE-ADLLRELARFIIQRQS 302 (324)
T ss_dssp ------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCGG-GHHHHHHHHHHHHTSS
T ss_pred chhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999863 7899999999999986
No 4
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=1.1e-70 Score=506.78 Aligned_cols=276 Identities=34% Similarity=0.530 Sum_probs=232.8
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcCCCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhh
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQ 93 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIh 93 (295)
|+|..++++..+.|++.|.+.++...|+.+.++++|...||||+||.|++++++++|++.+.+.++|++|||||+|||||
T Consensus 1 m~~~~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIH 80 (297)
T 3m0g_A 1 MSLSERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYAAQGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVH 80 (297)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHSCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 56888999999999999999987644667999999987899999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhc--c--------ccccccccccccccceecccCC
Q 037594 94 DDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKA--K--------NINSAVGSEGIAAGQIMDINSE 163 (295)
Q Consensus 94 DDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~--~--------~l~~~~~~~~~~~Gq~~dl~~~ 163 (295)
|||||||+|++|||+||+|++||+++|||+||+|++.||+.+++... + .+++++|..+|+.||.+|+.+.
T Consensus 81 DDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~ 160 (297)
T 3m0g_A 81 DDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAE 160 (297)
T ss_dssp HTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHT
T ss_pred cCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999998642 1 1555555578999999999887
Q ss_pred --CceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhh
Q 037594 164 --GKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMM 240 (295)
Q Consensus 164 --~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~ 240 (295)
...+++++|..|+.+|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++.+|| .|+|++
T Consensus 161 ~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~ 237 (297)
T 3m0g_A 161 TAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAE 237 (297)
T ss_dssp TSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC------------------
T ss_pred hcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhh
Confidence 4448899999999999999999999999999998876 8999999999999999999999999999999 999999
Q ss_pred ccccCCCceeeccCchhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccCC
Q 037594 241 RDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 241 ~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (295)
+||+|||+++++++|++.+++++++|++.|..||+. .+.|.+|++|+++|.+
T Consensus 238 ~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~-~~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 238 AHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEA-ASTLRACARYVIERDK 289 (297)
T ss_dssp ---CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGGG-GHHHHHHHHHHTC---
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999763 4789999999999976
No 5
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=5.3e-71 Score=510.62 Aligned_cols=279 Identities=33% Similarity=0.519 Sum_probs=245.3
Q ss_pred chhhhhhhhHHhHHHHhhhcCCCC-ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHH--HHHHHHHHHHHHHH
Q 037594 15 QVNEYKALKAKQINEALDEAVPLP-HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVA--MSMACAIELLVTMA 90 (295)
Q Consensus 15 ~~~~~l~~~~~~i~~~l~~~~~~~-~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~--~~~A~avEliH~as 90 (295)
+|..++++..+.|++.|.+.++.. .|+.+.++++|.+ .||||+||.|++++++++|++.+.+ .++|++|||||+||
T Consensus 7 ~~~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~~A~aiEliH~aS 86 (309)
T 3pde_A 7 RLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTYS 86 (309)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHhHhHHHHHHHHHHHHH
Confidence 478899999999999999987653 3568999999999 9999999999999999999998888 99999999999999
Q ss_pred HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhcc---------ccccccccccccccceeccc
Q 037594 91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAK---------NINSAVGSEGIAAGQIMDIN 161 (295)
Q Consensus 91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~---------~l~~~~~~~~~~~Gq~~dl~ 161 (295)
||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++...+ .+++++|..+|+.||.+|+.
T Consensus 87 LIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~ 166 (309)
T 3pde_A 87 LIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQ 166 (309)
T ss_dssp HHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999985322 14555545689999999999
Q ss_pred CCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhh
Q 037594 162 SEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMM 240 (295)
Q Consensus 162 ~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~ 240 (295)
+....+++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|++
T Consensus 167 ~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~ 246 (309)
T 3pde_A 167 SEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDAD 246 (309)
T ss_dssp TTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CT
T ss_pred ccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhh
Confidence 8766688999999999999999999999999999999998999999999999999999999999999999999 999999
Q ss_pred ccccCCCceeeccCchhhHHHHHHHHHhhccccCCC--CCCchhhhhhhhhccCCC
Q 037594 241 RDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPT--RAAPLDHLVNFIVSFGNN 294 (295)
Q Consensus 241 ~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~--~~~~L~~l~~~~~~R~~~ 294 (295)
+||+|||++++++.+++.+++++++|.+.|+.+|.. ... |.++++|+++|.+|
T Consensus 247 egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~~~~~~~~-L~~l~~~~~~r~~~ 301 (309)
T 3pde_A 247 EAKNTYPGKLGLIGANQALIDTIHSGQAALQGLPTSTQRDD-LAAFFSYFDTERVN 301 (309)
T ss_dssp TTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH-HHGGGGGSCTTTTC
T ss_pred cCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccCHHH-HHHHHHHHHHhhcC
Confidence 999999999999999999999999999999994321 112 99999999999875
No 6
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=4e-70 Score=507.70 Aligned_cols=277 Identities=35% Similarity=0.562 Sum_probs=239.2
Q ss_pred hhhhhhhhHHhHHHHhhhcCCCC--ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHh
Q 037594 16 VNEYKALKAKQINEALDEAVPLP--HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVI 92 (295)
Q Consensus 16 ~~~~l~~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLI 92 (295)
+...+++..+.|++.|.+.++.. .|+.+.++++|.+ .||||+||.|++++++++|++.+.+.++|++|||||+||||
T Consensus 33 ~~~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLI 112 (324)
T 3uca_A 33 TAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLI 112 (324)
T ss_dssp -CCCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHHHHHTTCSCGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45567788999999999998753 3668999999999 99999999999999999999999999999999999999999
Q ss_pred hcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhc--c----c----cccccccccccccceecccC
Q 037594 93 QDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKA--K----N----INSAVGSEGIAAGQIMDINS 162 (295)
Q Consensus 93 hDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~--~----~----l~~~~~~~~~~~Gq~~dl~~ 162 (295)
||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++... . . ++++.+..+|+.||.+|+.+
T Consensus 113 HDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~ 192 (324)
T 3uca_A 113 HDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIIN 192 (324)
T ss_dssp HHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHT
T ss_pred HCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHc
Confidence 999999999999999999999999999999999999999999988531 1 1 44544446899999999998
Q ss_pred CCc-eeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhh
Q 037594 163 EGK-EVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMM 240 (295)
Q Consensus 163 ~~~-~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~ 240 (295)
..+ .+++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|++
T Consensus 193 ~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~ 272 (324)
T 3uca_A 193 EDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQE 272 (324)
T ss_dssp SSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------
T ss_pred CCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhh
Confidence 876 488999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ccccCCCceeeccCchhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccCC
Q 037594 241 RDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 241 ~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (295)
+||+|||+++++++|++.++++.++|++.|+.||. .++.|.++++|+++|.+
T Consensus 273 egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 273 SNKNNYITIFGLEECKKKCVNITEECIEILSSIKG-NTEPLKVLTMKLLERKF 324 (324)
T ss_dssp ----CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSS-CCHHHHHHHHHHHHCCC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999986 46899999999999975
No 7
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=1.7e-70 Score=506.27 Aligned_cols=276 Identities=33% Similarity=0.532 Sum_probs=237.0
Q ss_pred hhhhhhhhHHhHHHHhhhcCCC-CChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhh-HHHHHHHHHHHHHHHHHh
Q 037594 16 VNEYKALKAKQINEALDEAVPL-PHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQS-VAMSMACAIELLVTMAVI 92 (295)
Q Consensus 16 ~~~~l~~~~~~i~~~l~~~~~~-~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~-~~~~~A~avEliH~asLI 92 (295)
+..+-+...+.|++.|.+.++. ..|+.+.++++|.+ .||||+||.|++++++++|++.+ .++++|++|||||+||||
T Consensus 10 ~~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~A~avEliH~asLI 89 (302)
T 3p8l_A 10 LTNFSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLI 89 (302)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3456677788899999888754 24568999999999 99999999999999999999887 899999999999999999
Q ss_pred hcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhcc---------ccccccccccccccceecccCC
Q 037594 93 QDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAK---------NINSAVGSEGIAAGQIMDINSE 163 (295)
Q Consensus 93 hDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~---------~l~~~~~~~~~~~Gq~~dl~~~ 163 (295)
||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++...+ .++++++...|+.||.+|+.+.
T Consensus 90 HDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~ 169 (302)
T 3p8l_A 90 HDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGE 169 (302)
T ss_dssp HHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTT
T ss_pred HCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999984322 1455554568999999999987
Q ss_pred CceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhcc
Q 037594 164 GKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRD 242 (295)
Q Consensus 164 ~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~g 242 (295)
...+++++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++|
T Consensus 170 ~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~eg 249 (302)
T 3p8l_A 170 KVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALN 249 (302)
T ss_dssp TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----------------
T ss_pred CCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcC
Confidence 66688999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccCCCceeeccCchhhHHHHHHHHHhhccccC----CCCCCchhhhhhhhhcc
Q 037594 243 KATYPKLVGIDGSKKHAKELIAEAKQELAYFD----PTRAAPLDHLVNFIVSF 291 (295)
Q Consensus 243 k~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~----~~~~~~L~~l~~~~~~R 291 (295)
|+|||++++++.|++.++++.++|++.|+.|| +..++.|.+|++|+++|
T Consensus 250 K~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 250 KSTYPALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR 302 (302)
T ss_dssp -CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHTSCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChhHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999995 45678999999999988
No 8
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=3.6e-70 Score=504.66 Aligned_cols=280 Identities=35% Similarity=0.577 Sum_probs=257.1
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCC--ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLP--HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMA 90 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~as 90 (295)
|+|..++++..+.|++.|.+.++.. .|+.+.++++|.+ .||||+||.|++++++++|++.+.+.++|++|||||+||
T Consensus 1 m~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~as 80 (299)
T 1rqj_A 1 MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYS 80 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Confidence 4678889999999999999988653 2567999999999 999999999999999999998889999999999999999
Q ss_pred HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhh-----cc-------cccccccccccccccee
Q 037594 91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIK-----AK-------NINSAVGSEGIAAGQIM 158 (295)
Q Consensus 91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~-----~~-------~l~~~~~~~~~~~Gq~~ 158 (295)
||||||||||+|++|||+||+|++||+++|||+||+|++.||+++++.. .. .+++++|...++.||.+
T Consensus 81 LiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~ 160 (299)
T 1rqj_A 81 LIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL 160 (299)
T ss_dssp HHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999841 10 14555444789999999
Q ss_pred cccCCCceeeccccchhhhccccCeeeeeeeeeeEe-cCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hh
Q 037594 159 DINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVII-GGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TG 236 (295)
Q Consensus 159 dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~l-ag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~ 236 (295)
|+.+..+.+++++|..|+++|||+||++||++|+++ +|++++..+.+++||.++|+||||+||++|++++++.+|| .|
T Consensus 161 dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g 240 (299)
T 1rqj_A 161 DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQG 240 (299)
T ss_dssp HHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTT
T ss_pred HHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChh
Confidence 999876557889999999999999999999999999 9988888999999999999999999999999999999999 99
Q ss_pred hhhhccccCCCceeeccCchhhHHHHHHHHHhhccccCC-C-CCCchhhhhhhhhccCC
Q 037594 237 RDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDP-T-RAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 237 ~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~-~-~~~~L~~l~~~~~~R~~ 293 (295)
+|+++||+|||++++++++++.++++.++|++.|+.+|. + .++.|.+|++|+++|.+
T Consensus 241 ~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 241 ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 299 (299)
T ss_dssp HHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCCC
T ss_pred hHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999964 3 57889999999999964
No 9
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=6.4e-70 Score=504.72 Aligned_cols=276 Identities=30% Similarity=0.428 Sum_probs=242.9
Q ss_pred hhhhhhhhHHhHHHHhhhcCCCC--ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHh
Q 037594 16 VNEYKALKAKQINEALDEAVPLP--HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVI 92 (295)
Q Consensus 16 ~~~~l~~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLI 92 (295)
|..++++..+.|++.|.+.++.. .|+.+.++++|.+ .||||+||.|++++++++|++.+.+.++|++|||||+||||
T Consensus 9 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLI 88 (313)
T 3lom_A 9 NKQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLI 88 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998753 3678999999999 99999999999999999999999999999999999999999
Q ss_pred hcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhh-c--c-c--------cccccccccccccceecc
Q 037594 93 QDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIK-A--K-N--------INSAVGSEGIAAGQIMDI 160 (295)
Q Consensus 93 hDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~-~--~-~--------l~~~~~~~~~~~Gq~~dl 160 (295)
||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.. . + . ++++.|..+|+.||.+|+
T Consensus 89 HDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl 168 (313)
T 3lom_A 89 HDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDL 168 (313)
T ss_dssp HHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred hCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999862 1 1 1 445544468999999999
Q ss_pred cCCCc-eeeccccchhhhccccCeeeeeeeeeeEecC--CCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hh
Q 037594 161 NSEGK-EVSLSELNFIHRHKTGKFIEASIVSGVIIGG--GNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TG 236 (295)
Q Consensus 161 ~~~~~-~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag--~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~ 236 (295)
.+..+ .+++++|..|+++|||+||++||++ ++++| ++++.++.+++||.++|+||||+||++|++++++.+|| .|
T Consensus 169 ~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g 247 (313)
T 3lom_A 169 SELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRS 247 (313)
T ss_dssp HTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCc
Confidence 99876 4889999999999999999999999 99999 89999999999999999999999999999999999999 99
Q ss_pred hhhhccccCCCceeeccCchhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccCC
Q 037594 237 RDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 237 ~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (295)
+|+++||+|||+++|+++|++.+++++++|++.|+.||+ .++.|.+|++|+++|.+
T Consensus 248 ~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~~~~R~~ 303 (313)
T 3lom_A 248 SDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGS-KAAALIELTKQLQNRSN 303 (313)
T ss_dssp ------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGG-GGHHHHHHHHHHHHHHH
T ss_pred chhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999976 47899999999999965
No 10
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=3.7e-70 Score=504.51 Aligned_cols=275 Identities=35% Similarity=0.538 Sum_probs=225.6
Q ss_pred hhhhhhHHhHHHHhhhcCCCC--ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhc
Q 037594 18 EYKALKAKQINEALDEAVPLP--HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQD 94 (295)
Q Consensus 18 ~~l~~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhD 94 (295)
+.+....+.|++.|.+.++.. .|+.+.++++|.+ .||||+||.|++++++++|++.+.+.++|++|||||+||||||
T Consensus 11 ~~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHD 90 (302)
T 3p8r_A 11 EALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHD 90 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 467788899999999988653 3567999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhh----cc--------ccccccccccccccceecccC
Q 037594 95 DLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIK----AK--------NINSAVGSEGIAAGQIMDINS 162 (295)
Q Consensus 95 DI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~----~~--------~l~~~~~~~~~~~Gq~~dl~~ 162 (295)
||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+ .++++.+...|+.||.+|+.+
T Consensus 91 DIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~ 170 (302)
T 3p8r_A 91 DLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAA 170 (302)
T ss_dssp TCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHT
T ss_pred CcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHc
Confidence 999999999999999999999999999999999999999999863 11 144554446899999999999
Q ss_pred CCceeeccccchhhhccccCeeeeeeeeeeEecC-CCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhh
Q 037594 163 EGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGG-GNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMM 240 (295)
Q Consensus 163 ~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~ 240 (295)
....+++++|..|+++|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|| .|+|++
T Consensus 171 ~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~ 250 (302)
T 3p8r_A 171 ENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQE 250 (302)
T ss_dssp TTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred cCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHh
Confidence 7655889999999999999999999999999999 88888899999999999999999999999999999999 999999
Q ss_pred ccccCCCceeeccCchhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccCC
Q 037594 241 RDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 241 ~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (295)
+||+|||+++++++|++.++++.++|++.|+.||.. ++.|.+|++|+++|.+
T Consensus 251 egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~-~~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 251 LNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN-TEHLEEFARYVVERKN 302 (302)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC-THHHHHHHHHHHHCCC
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999864 7899999999999974
No 11
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=8.3e-70 Score=508.26 Aligned_cols=279 Identities=34% Similarity=0.497 Sum_probs=239.9
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCC-------ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHH
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLP-------HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIEL 85 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~-------~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEl 85 (295)
.+|..++++..+.|++.|.+.++.. .|+.+.++++|.+ .||||+||.|++++++++|++.+.++++|++|||
T Consensus 37 ~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEl 116 (335)
T 2h8o_A 37 TNFETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALEC 116 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4577888999999999999998652 3567999999999 9999999999999999999988889999999999
Q ss_pred HHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhh--cc---------ccccccccccccc
Q 037594 86 LVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIK--AK---------NINSAVGSEGIAA 154 (295)
Q Consensus 86 iH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~--~~---------~l~~~~~~~~~~~ 154 (295)
||+||||||||||||+|++|||+||+|++||+++|||+||+|++.||+++++.. .+ .+++++|..+++.
T Consensus 117 iH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~ 196 (335)
T 2h8o_A 117 LHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAG 196 (335)
T ss_dssp HHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999861 11 1555555578999
Q ss_pred cceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh
Q 037594 155 GQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK 234 (295)
Q Consensus 155 Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK 234 (295)
||.+|+.+..+.+++++|.+|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+||
T Consensus 197 GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK 276 (335)
T 2h8o_A 197 GQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGK 276 (335)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCC
Confidence 99999987654578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hhhhhhccccCCCceeeccCchhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccCC
Q 037594 235 -TGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 235 -~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (295)
.|+|+++||+|||++++++++++.++++.++|++.|+.+|. .++.|.+|++|+++|.+
T Consensus 277 ~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 277 ATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE-KAAILIAAARFIAERKS 335 (335)
T ss_dssp ---------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG-GGHHHHHHHHHHHC---
T ss_pred CcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999976 67889999999999964
No 12
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=1.9e-69 Score=499.89 Aligned_cols=271 Identities=33% Similarity=0.519 Sum_probs=236.8
Q ss_pred hHHhHHHHhhhcCCCC-ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 037594 23 KAKQINEALDEAVPLP-HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLD 100 (295)
Q Consensus 23 ~~~~i~~~l~~~~~~~-~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D 100 (295)
..+.|++.|.+.+... .|+.+.++++|.+ .||||+||.|++++++++|++.+.++++|++|||||+||||||||||||
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D 88 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMD 88 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCchhcc
Confidence 6778999999988652 3457999999999 9999999999999999999988888999999999999999999999999
Q ss_pred ccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhh-hcc---------ccccccccccccccceecccCCCceeecc
Q 037594 101 NDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAII-KAK---------NINSAVGSEGIAAGQIMDINSEGKEVSLS 170 (295)
Q Consensus 101 ~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l-~~~---------~l~~~~~~~~~~~Gq~~dl~~~~~~~~~~ 170 (295)
+|++|||+||+|++||+++|||+||+|++.||+++++. ..+ .+++++|...++.||.+|+.+..+.++++
T Consensus 89 ~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~~~~~~ 168 (301)
T 1rtr_A 89 NDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLE 168 (301)
T ss_dssp CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHH
T ss_pred CCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCCCCCHH
Confidence 99999999999999999999999999999999999985 111 14555555789999999999876568899
Q ss_pred ccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCCce
Q 037594 171 ELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKL 249 (295)
Q Consensus 171 ~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~~ 249 (295)
+|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||++
T Consensus 169 ~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l 248 (301)
T 1rtr_A 169 TLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSL 248 (301)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred eeccCchhhHHHHHHHHHhhccccCC-CCCCchhhhhhhhhccCC
Q 037594 250 VGIDGSKKHAKELIAEAKQELAYFDP-TRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 250 ~~le~a~~~~~~~~~~A~~~L~~l~~-~~~~~L~~l~~~~~~R~~ 293 (295)
++++++++.++++.++|++.|+.||+ +.++.|.++++|+++|.+
T Consensus 249 ~al~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 249 LGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCTTSCCHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999974 457889999999999976
No 13
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=8.2e-69 Score=496.93 Aligned_cols=278 Identities=28% Similarity=0.452 Sum_probs=239.5
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCC--CChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchh------hHHHHHHHHHH
Q 037594 14 FQVNEYKALKAKQINEALDEAVPL--PHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQ------SVAMSMACAIE 84 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~--~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~------~~~~~~A~avE 84 (295)
|+|..++++... |++.|.+.++. ..|+.+.++++|.+ .||||+||.|++++++++|++. +.+.++|++||
T Consensus 6 ~~~~~~~~~~~~-ve~~l~~~~~~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~~~~~~~A~aiE 84 (311)
T 3llw_A 6 PNLSFYYNECER-FESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIE 84 (311)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCCCCCCSSCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH-HHHHHHHHhhhccCCcHHHHHHHHHHhhCCCCchHHHHHHHHHHHhCCCcccccchHHHHHHHHHHH
Confidence 678899999888 99999999864 24568999999999 9999999999999999999988 89999999999
Q ss_pred HHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhh--hhcc-------cccccccccccccc
Q 037594 85 LLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAI--IKAK-------NINSAVGSEGIAAG 155 (295)
Q Consensus 85 liH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~--l~~~-------~l~~~~~~~~~~~G 155 (295)
|||+||||||||||||+|++|||+||+|++||+.+|||+||+|++.||+++++ ++.+ .++++.|..+|+.|
T Consensus 85 liH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~G 164 (311)
T 3llw_A 85 CLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILG 164 (311)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988 3221 14555334789999
Q ss_pred ceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHH-HHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh
Q 037594 156 QIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEI-ERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK 234 (295)
Q Consensus 156 q~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~-~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK 234 (295)
|.+|+.+....+++++|.+|+++|||+||++||++|++++|++++.+ +.+++||.++|+||||+||++|++++++.+||
T Consensus 165 Q~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK 244 (311)
T 3llw_A 165 QALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGK 244 (311)
T ss_dssp HHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCc
Confidence 99999987655889999999999999999999999999999998888 89999999999999999999999999999999
Q ss_pred hhhhhhccccCCCceeeccCchhhHHHHHHHHHhhccccCC--CC-CCchhhhhhhhhccCC
Q 037594 235 TGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDP--TR-AAPLDHLVNFIVSFGN 293 (295)
Q Consensus 235 ~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~--~~-~~~L~~l~~~~~~R~~ 293 (295)
...| ++||+|||++++++.+++.+++++++|.+.|..|+. .. .+.|.++++|+++|..
T Consensus 245 ~~g~-~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~l~~~~~~r~~ 305 (311)
T 3llw_A 245 TTHL-DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFKGEG 305 (311)
T ss_dssp -------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHC---
T ss_pred cccc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccHHHHHHHHHHHHHhccc
Confidence 4445 999999999999999999999999999999999542 13 5689999999999964
No 14
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=2.5e-67 Score=493.53 Aligned_cols=278 Identities=25% Similarity=0.383 Sum_probs=230.7
Q ss_pred cccccchhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHH
Q 037594 10 LPKFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVT 88 (295)
Q Consensus 10 ~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~ 88 (295)
+++|.++..+++.+++.|++.|.+.++..+| .+.++++|.+ .||||+||.|++++++++|++.+.++++|++|||||+
T Consensus 21 ~~~~~~l~~~l~~~l~~v~~~l~~~l~~~~~-~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~aiEliH~ 99 (345)
T 3oyr_A 21 SGSVDRLVRLAEADMAGVNRLITDRMQSDVA-IIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHT 99 (345)
T ss_dssp CCCSHHHHHHTHHHHHHHHHHHHHHTCCSST-HHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCh-hHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999987644 6999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCC
Q 037594 89 MAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEG 164 (295)
Q Consensus 89 asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~ 164 (295)
|||||||| ||+|++|||+||+|.+||+++|||+||||++.||+.++++.... +++++ ..++.||.+|+.+..
T Consensus 100 asLiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~ 175 (345)
T 3oyr_A 100 ATLLHDDV--VDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARAS--RVIAEGEVLQLMRSH 175 (345)
T ss_dssp HHHHTTTT--C---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH--HHHHHHHHHHHHTSS
T ss_pred HHHHHCcc--cCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH--HHHHHHHHHHHHcCC
Confidence 99999999 99999999999999999999999999999999999999865432 67777 789999999999876
Q ss_pred ce-eeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhcc
Q 037594 165 KE-VSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRD 242 (295)
Q Consensus 165 ~~-~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~g 242 (295)
+. +++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+||++|
T Consensus 176 ~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~eg 255 (345)
T 3oyr_A 176 DLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREG 255 (345)
T ss_dssp CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC------------------
T ss_pred CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcC
Confidence 54 88999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccCCCceeec--------------------------------------cCchhhHHHHHHHHHhhccccCCC-CCCchhh
Q 037594 243 KATYPKLVGI--------------------------------------DGSKKHAKELIAEAKQELAYFDPT-RAAPLDH 283 (295)
Q Consensus 243 k~T~p~~~~l--------------------------------------e~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~ 283 (295)
|+|||+++++ +++++.++++.++|++.|+.||++ .++.|.+
T Consensus 256 K~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~ 335 (345)
T 3oyr_A 256 KATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWREALEE 335 (345)
T ss_dssp -CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHHHHHHH
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9999999865 556788899999999999999764 5689999
Q ss_pred hhhhhhccC
Q 037594 284 LVNFIVSFG 292 (295)
Q Consensus 284 l~~~~~~R~ 292 (295)
|++|+++|.
T Consensus 336 la~~~~~R~ 344 (345)
T 3oyr_A 336 LADFAVSRR 344 (345)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcc
Confidence 999999995
No 15
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.1e-66 Score=488.94 Aligned_cols=280 Identities=22% Similarity=0.365 Sum_probs=242.6
Q ss_pred cccccchhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHH
Q 037594 10 LPKFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVT 88 (295)
Q Consensus 10 ~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~ 88 (295)
.++|.++..+++++++.|++.|.+.+....++.+.++++|.+ .||||+||.|++++++++|++.+.+.++|++|||||+
T Consensus 8 ~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~ 87 (341)
T 3mzv_A 8 TKPHDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHT 87 (341)
T ss_dssp -CHHHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 347788999999999999999999998752457999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCC
Q 037594 89 MAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEG 164 (295)
Q Consensus 89 asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~ 164 (295)
|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+.+++..... +++++ ..++.||.+|+.+..
T Consensus 88 asLiHDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~ 163 (341)
T 3mzv_A 88 ATLLHDDV--VDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANAS--AVIAEGEVLQLTAAQ 163 (341)
T ss_dssp HHHHHHHC--------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHH--HHHHHHHHHHHHHTT
T ss_pred HHHHHcCc--cCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH--HHHHHHHHHHHHhcc
Confidence 99999999 99999999999999999999999999999999999999864332 66777 889999999998875
Q ss_pred ce-eeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhcc
Q 037594 165 KE-VSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRD 242 (295)
Q Consensus 165 ~~-~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~g 242 (295)
+. +++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++|
T Consensus 164 ~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~eg 243 (341)
T 3mzv_A 164 NLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRER 243 (341)
T ss_dssp CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTT
T ss_pred CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccC
Confidence 53 88999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccCCCceeec--------------------------------------cCchhhHHHHHHHHHhhccccCCC-CCCchhh
Q 037594 243 KATYPKLVGI--------------------------------------DGSKKHAKELIAEAKQELAYFDPT-RAAPLDH 283 (295)
Q Consensus 243 k~T~p~~~~l--------------------------------------e~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~ 283 (295)
|+|||+++++ +++++.+++|.++|++.|+.+|++ .++.|.+
T Consensus 244 K~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~ 323 (341)
T 3mzv_A 244 KLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQMLDD 323 (341)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred chhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999864 445677889999999999999754 4789999
Q ss_pred hhhhhhccCC
Q 037594 284 LVNFIVSFGN 293 (295)
Q Consensus 284 l~~~~~~R~~ 293 (295)
|++|+++|.+
T Consensus 324 la~~~~~r~~ 333 (341)
T 3mzv_A 324 LADYVVERVR 333 (341)
T ss_dssp HHHHHTGGGC
T ss_pred HHHHHHhccc
Confidence 9999999976
No 16
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-67 Score=481.88 Aligned_cols=265 Identities=29% Similarity=0.439 Sum_probs=233.1
Q ss_pred hhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCC
Q 037594 20 KALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPC 98 (295)
Q Consensus 20 l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~ 98 (295)
.....++|++.|++.++...|+.+.++++|.+ .||||+||.|++++++++|++.+.+.++|++|||||+||||||||||
T Consensus 11 ~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~ 90 (284)
T 2ftz_A 11 HHMKXEXVEERIREILRPGWDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPP 90 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hccchHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 34457888998888874434567999999999 99999999999999999999888899999999999999999999999
Q ss_pred CCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCCc--eeecccc
Q 037594 99 LDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEGK--EVSLSEL 172 (295)
Q Consensus 99 ~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~~--~~~~~~~ 172 (295)
||+|++|||+||+|++||+++|||+||+|++.||+.+++.++.. +++++ ..++.||.+|+.+..+ .+++++|
T Consensus 91 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~y 168 (284)
T 2ftz_A 91 IDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETA--YXLLLGEAMDVEFERRXMEVSQEMV 168 (284)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH--HHHHHHHHHHHHHHHSCCCCCHHHH
T ss_pred cCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH--HHHhhhhHHHHHhccCcCCCCHHHH
Confidence 99999999999999999999999999999999999999864322 66777 8999999999987654 4788999
Q ss_pred chhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCCceee
Q 037594 173 NFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKLVG 251 (295)
Q Consensus 173 ~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~~~~ 251 (295)
..|+++|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++.+|| .|+|++ |+|||++++
T Consensus 169 ~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~~ 243 (284)
T 2ftz_A 169 ERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXVG 243 (284)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHHC
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHHH
Confidence 9999999999999999999999998876 8999999999999999999999999999999 999999 999999999
Q ss_pred ccCchhhHHHHHHHHHhhccccCCCCCCc-hhhhhhhhhcc
Q 037594 252 IDGSKKHAKELIAEAKQELAYFDPTRAAP-LDHLVNFIVSF 291 (295)
Q Consensus 252 le~a~~~~~~~~~~A~~~L~~l~~~~~~~-L~~l~~~~~~R 291 (295)
++++++.++++.++|++.|+.+|++.++. |.+|++|+++|
T Consensus 244 l~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 244 IQXAREMADXYYEEVLXGIESEGLFRTLFLLXELXQMVEER 284 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHcC
Confidence 99999999999999999999997534677 99999999987
No 17
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=7.1e-66 Score=473.24 Aligned_cols=267 Identities=31% Similarity=0.470 Sum_probs=225.9
Q ss_pred HHhHHHHhhhcCCCC--ChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccch-hhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 037594 24 AKQINEALDEAVPLP--HPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGS-QSVAMSMACAIELLVTMAVIQDDLPCL 99 (295)
Q Consensus 24 ~~~i~~~l~~~~~~~--~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~-~~~~~~~A~avEliH~asLIhDDI~~~ 99 (295)
.+.|++.|++.++.. .++.+.++++|.+ .||||+||.|++++++++|++ .+.+.++|++|||||+|||||||||||
T Consensus 6 ~~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~m 85 (291)
T 3npk_A 6 KELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAM 85 (291)
T ss_dssp HHHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHCCcccc
Confidence 467888888887542 3457999999999 999999999999999999887 588999999999999999999999999
Q ss_pred CccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhcc---------ccccccccccccccceecccCCCceeecc
Q 037594 100 DNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAK---------NINSAVGSEGIAAGQIMDINSEGKEVSLS 170 (295)
Q Consensus 100 D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~---------~l~~~~~~~~~~~Gq~~dl~~~~~~~~~~ 170 (295)
|+|++|||+||+|++||+++|||+||+|++.||+.+++...+ .++++.|...|+.||.+|+.+....++++
T Consensus 86 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~ 165 (291)
T 3npk_A 86 DNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLN 165 (291)
T ss_dssp TCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHH
T ss_pred cCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCHH
Confidence 999999999999999999999999999999999999874321 15566334899999999999876558899
Q ss_pred ccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCCce
Q 037594 171 ELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKL 249 (295)
Q Consensus 171 ~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~~ 249 (295)
+|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .+.| +||+|||++
T Consensus 166 ~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~p~l 243 (291)
T 3npk_A 166 ELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSFVNL 243 (291)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchHHHH
Confidence 9999999999999999999999999999998999999999999999999999999999999999 7666 999999999
Q ss_pred eeccCchhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccC
Q 037594 250 VGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFG 292 (295)
Q Consensus 250 ~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~ 292 (295)
++++.+++.+++++++|.+.|..|+....+.|.++++|..+-.
T Consensus 244 ~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~l~~la~~~~~~~ 286 (291)
T 3npk_A 244 LGLEQAIKTKENLLNECEQDLEKLNEKLAQMIQNLIIQYLEGH 286 (291)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999997633678999999987643
No 18
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=5.1e-65 Score=468.86 Aligned_cols=267 Identities=52% Similarity=0.874 Sum_probs=239.7
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHh
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVI 92 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLI 92 (295)
.+|..++++..+.|++.|.+.++...|+.+.++++|.+ .||||+||.|++++++++|++.+.++++|++|||||+||||
T Consensus 11 ~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLi 90 (293)
T 2j1p_A 11 TDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSLI 90 (293)
T ss_dssp --CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999997656677999999999 99999999999999999999888899999999999999999
Q ss_pred hcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhc-----cc-------cccccccccccccceecc
Q 037594 93 QDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKA-----KN-------INSAVGSEGIAAGQIMDI 160 (295)
Q Consensus 93 hDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~-----~~-------l~~~~~~~~~~~Gq~~dl 160 (295)
||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++... .. +++++|..+++.||.+|+
T Consensus 91 HDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl 170 (293)
T 2j1p_A 91 HDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDI 170 (293)
T ss_dssp HHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTT
T ss_pred HCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988531 11 334443467999999999
Q ss_pred cCCCc---eeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhh
Q 037594 161 NSEGK---EVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGR 237 (295)
Q Consensus 161 ~~~~~---~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~ 237 (295)
.+... .+++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+++++
T Consensus 171 ~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~-------- 242 (293)
T 2j1p_A 171 SSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS-------- 242 (293)
T ss_dssp C---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--------
Confidence 98764 3788999999999999999999999999999999999999999999999999999999999874
Q ss_pred hhhccccCCCceeeccCchhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccCC
Q 037594 238 DMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 238 Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (295)
|.|+|+++++++|++.++++.++|++.|+.+|++.++.|.++++|+++|.+
T Consensus 243 -----K~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 243 -----KLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 293 (293)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCTTTTHHHHHHHHHHHHCCC
T ss_pred -----cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhcC
Confidence 899999999999999999999999999999976567899999999999964
No 19
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.8e-65 Score=481.65 Aligned_cols=275 Identities=33% Similarity=0.480 Sum_probs=250.0
Q ss_pred chhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhh
Q 037594 15 QVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQ 93 (295)
Q Consensus 15 ~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIh 93 (295)
.+...++.+++.|++.|.+.++...++.+.++++|++ .||||+||.|++++++++|++.+.+.++|++|||||+|||||
T Consensus 6 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiH 85 (342)
T 1wy0_A 6 ELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVH 85 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888999999999997752557999999999 999999999999999999998888999999999999999999
Q ss_pred cCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhh-----ccc----cccccccccccccceecccCCC
Q 037594 94 DDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIK-----AKN----INSAVGSEGIAAGQIMDINSEG 164 (295)
Q Consensus 94 DDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~-----~~~----l~~~~~~~~~~~Gq~~dl~~~~ 164 (295)
||| ||+|++|||+||+|.+||+++|||+||+|++.||+.++++. ... +++++ ..++.||.+|+.+..
T Consensus 86 DDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~ 161 (342)
T 1wy0_A 86 DDI--MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKAS--NELCEGQARDLEFEK 161 (342)
T ss_dssp HHH--HHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTT
T ss_pred CCc--ccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHH--HHHHHHHHHHHHccc
Confidence 999 99999999999999999999999999999999999999862 111 66777 899999999999876
Q ss_pred ce-eeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhcc
Q 037594 165 KE-VSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRD 242 (295)
Q Consensus 165 ~~-~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~g 242 (295)
.. .++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+||++|
T Consensus 162 ~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~eg 241 (342)
T 1wy0_A 162 KSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKG 241 (342)
T ss_dssp CSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHT
T ss_pred CCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCC
Confidence 53 78999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccCCCceeecc-------------------------------------------------CchhhHHHHHHHHHhhcccc
Q 037594 243 KATYPKLVGID-------------------------------------------------GSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 243 k~T~p~~~~le-------------------------------------------------~a~~~~~~~~~~A~~~L~~l 273 (295)
|+|||++++++ ++++.++++.++|++.|+.+
T Consensus 242 K~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l 321 (342)
T 1wy0_A 242 KKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRIL 321 (342)
T ss_dssp CCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGS
T ss_pred CCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999875 34567889999999999999
Q ss_pred CCC-CCCchhhhhhhhhccCC
Q 037594 274 DPT-RAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 274 ~~~-~~~~L~~l~~~~~~R~~ 293 (295)
|+. .++.|..+++|+++|.+
T Consensus 322 ~~~~~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 322 PKSKARMDLELLAKFIVEREY 342 (342)
T ss_dssp CCCHHHHHHHHHHHHTTTCC-
T ss_pred CCcHHHHHHHHHHHHHHhccC
Confidence 754 46789999999999964
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=2.2e-65 Score=482.26 Aligned_cols=274 Identities=22% Similarity=0.317 Sum_probs=235.6
Q ss_pred chhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhcc-chhhHHHHHHHHHHHHHHHHHh
Q 037594 15 QVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIG-GSQSVAMSMACAIELLVTMAVI 92 (295)
Q Consensus 15 ~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g-~~~~~~~~~A~avEliH~asLI 92 (295)
++..+++..++.|++.|.+.++.. ++.+.++++|.+ .||||+||.|++++++++| ++.+.++++|++|||||+||||
T Consensus 35 ~~~~~l~~~l~~ve~~l~~~~~~~-~~~l~~~~~y~~~~gGKrlRp~L~ll~~~~~~~~~~~~~~~~A~avEliH~asLI 113 (360)
T 3lmd_A 35 ELTARINDAMVQVEELLHTELSSG-EDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLY 113 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHHHHCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999875 457999999999 9999999999999999998 7888999999999999999999
Q ss_pred hcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhcc---ccccccccccccccceecccCCCceeec
Q 037594 93 QDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAK---NINSAVGSEGIAAGQIMDINSEGKEVSL 169 (295)
Q Consensus 93 hDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~---~l~~~~~~~~~~~Gq~~dl~~~~~~~~~ 169 (295)
|||| ||+|++|||+||+|.+||+++|||+||+|+++||+.++++++. .+++++ ..++.||.+|+.+..+.+++
T Consensus 114 HDDI--mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~t~ 189 (360)
T 3lmd_A 114 HDDV--MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGTDTVAHFAETF--GELVTGQMRETVGPRDTDPI 189 (360)
T ss_dssp HHHH--HC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHHHHHHHHHHHCCTTSCHH
T ss_pred hCCC--cCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH--HHHHHHHHHHHhccCCCCCH
Confidence 9999 9999999999999999999999999999999999999986542 266777 78999999999987655788
Q ss_pred cccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCCc
Q 037594 170 SELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPK 248 (295)
Q Consensus 170 ~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~ 248 (295)
++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+||++||+|||+
T Consensus 190 ~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~ 269 (360)
T 3lmd_A 190 EHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPV 269 (360)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred eee-------------------------------------ccCchhhHHHHHHHHHhhccccCCC-CCCchhhhhhhhhc
Q 037594 249 LVG-------------------------------------IDGSKKHAKELIAEAKQELAYFDPT-RAAPLDHLVNFIVS 290 (295)
Q Consensus 249 ~~~-------------------------------------le~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~~~~ 290 (295)
+++ ++++++.+++|.++|++.|+.+|+. .++.|.+|++|+++
T Consensus 270 l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~La~~~~~ 349 (360)
T 3lmd_A 270 LYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATFTVK 349 (360)
T ss_dssp HHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 985 4557778899999999999999754 46899999999999
Q ss_pred cCC
Q 037594 291 FGN 293 (295)
Q Consensus 291 R~~ 293 (295)
|.+
T Consensus 350 R~~ 352 (360)
T 3lmd_A 350 RVG 352 (360)
T ss_dssp TTS
T ss_pred hcc
Confidence 976
No 21
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=2.4e-65 Score=482.71 Aligned_cols=275 Identities=27% Similarity=0.398 Sum_probs=244.6
Q ss_pred ccchhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHH
Q 037594 13 FFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAV 91 (295)
Q Consensus 13 ~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asL 91 (295)
|..+..+++...+.|++.|.+.++...|+.+.++++|.+ .||||+||.|++++++++|++.+.++++|++|||||+|||
T Consensus 3 m~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asL 82 (358)
T 4dhd_A 3 MDVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSL 82 (358)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999987653667999999999 9999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhcc-----ccccccccccccccceecccCC---
Q 037594 92 IQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAK-----NINSAVGSEGIAAGQIMDINSE--- 163 (295)
Q Consensus 92 IhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~-----~l~~~~~~~~~~~Gq~~dl~~~--- 163 (295)
||||| ||+|++|||+||+|++||+++|||+||+|++.||+.+...... .+++++ ..++.||.+|+.+.
T Consensus 83 iHDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~ 158 (358)
T 4dhd_A 83 IYDDI--IDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVI--KAIDEGERLDILFEAAG 158 (358)
T ss_dssp HHHHH--HTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHH--HHHHHHHHHHHHTBSSC
T ss_pred HHCcc--ccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH--HHHHHHHHHHHHccccc
Confidence 99999 9999999999999999999999999999999999999653221 267777 88999999999886
Q ss_pred --------Cc--eeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhh
Q 037594 164 --------GK--EVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMRE 233 (295)
Q Consensus 164 --------~~--~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~G 233 (295)
.+ .+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|
T Consensus 159 ~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~G 238 (358)
T 4dhd_A 159 RSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFG 238 (358)
T ss_dssp CCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcC
Confidence 22 36889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhhhhcccc-CCCceeeccC--------------------------------------chhhHHHHHHHHHhhcccc
Q 037594 234 K-TGRDMMRDKA-TYPKLVGIDG--------------------------------------SKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 234 K-~~~Dl~~gk~-T~p~~~~le~--------------------------------------a~~~~~~~~~~A~~~L~~l 273 (295)
| .|+||++||+ |||++++++. +++.++++.++|++.|+.+
T Consensus 239 K~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~l 318 (358)
T 4dhd_A 239 KEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKI 318 (358)
T ss_dssp -CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcC
Confidence 9 9999999999 9999997654 5678889999999999999
Q ss_pred CCCCCCchhhhhhhhhccCC
Q 037594 274 DPTRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 274 ~~~~~~~L~~l~~~~~~R~~ 293 (295)
|+.. .|.+|++|+++|.+
T Consensus 319 p~~~--~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 319 PNNG--TLKELLDFIVAREY 336 (358)
T ss_dssp SSCH--HHHHHHHHHTTTTT
T ss_pred CCCH--HHHHHHHHHHhccc
Confidence 7543 89999999999976
No 22
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.3e-65 Score=477.85 Aligned_cols=274 Identities=21% Similarity=0.322 Sum_probs=229.9
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHh
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVI 92 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLI 92 (295)
..+...++.+++.|++.|.+.++.. ++.+.++++|.+ .||||+||.|++++++++|++.+.+.++|++|||||+||||
T Consensus 7 ~~~~~~i~~~l~~v~~~l~~~~~~~-~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLi 85 (334)
T 3rmg_A 7 SLIKTPIEAELEDFKALFDTPLSDS-NALLDSVITHIRKRNGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLV 85 (334)
T ss_dssp HHHHGGGHHHHHHHHHHTC----CC-CHHHHHHHHHTCC----CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999875 457999999999 99999999999999999999999999999999999999999
Q ss_pred hcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCCce-e
Q 037594 93 QDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEGKE-V 167 (295)
Q Consensus 93 hDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~~~-~ 167 (295)
|||| ||+|++|||+||+|++||+++|||+||+|++.|++.+++..... +++++ ..++.||.+|+.+.... +
T Consensus 86 HDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~ 161 (334)
T 3rmg_A 86 HDDV--VDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLG--QKLAEGELLQLSNVSNHSF 161 (334)
T ss_dssp HHHH--HC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHHHHHHHCCCC--C
T ss_pred HcCc--cCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH--HHHHHHHHHHHHhCCCCCC
Confidence 9999 99999999999999999999999999999999999998754332 66777 88999999999987654 8
Q ss_pred eccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCC
Q 037594 168 SLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATY 246 (295)
Q Consensus 168 ~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~ 246 (295)
++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++ +++.+|| .|+||++||+||
T Consensus 162 t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK~T~ 240 (334)
T 3rmg_A 162 SEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTL 240 (334)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTCCCH
T ss_pred CHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCchHH
Confidence 89999999999999999999999999999999999999999999999999999999999 5789999 999999999999
Q ss_pred Cceee--------------------------------------ccCchhhHHHHHHHHHhhccccCCC-CCCchhhhhhh
Q 037594 247 PKLVG--------------------------------------IDGSKKHAKELIAEAKQELAYFDPT-RAAPLDHLVNF 287 (295)
Q Consensus 247 p~~~~--------------------------------------le~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~ 287 (295)
|++++ ++++++.++++.++|++.|+.+|++ .++.|.+|++|
T Consensus 241 p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~ 320 (334)
T 3rmg_A 241 PALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLALRTYLDY 320 (334)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99983 5566778899999999999999754 46899999999
Q ss_pred hhccCC
Q 037594 288 IVSFGN 293 (295)
Q Consensus 288 ~~~R~~ 293 (295)
+++|.+
T Consensus 321 ~~~R~~ 326 (334)
T 3rmg_A 321 VVAREK 326 (334)
T ss_dssp HHHCC-
T ss_pred HHhccc
Confidence 999976
No 23
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=9.7e-65 Score=474.67 Aligned_cols=274 Identities=21% Similarity=0.321 Sum_probs=249.9
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccc--hhhHHHHHHHHHHHHHHHH
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGG--SQSVAMSMACAIELLVTMA 90 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~--~~~~~~~~A~avEliH~as 90 (295)
.+.+..++++++.|++.|.+.+....| .+.++++|.+ .||||+||.|++++++ +|+ +.+.+.++|++|||||+||
T Consensus 15 ~~~~~~i~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKrlRp~l~l~~~~-~g~~~~~~~~~~~A~aiEliH~as 92 (334)
T 3pko_A 15 WRQFPQVEPQLTALQDYLLRTVQLDNQ-PIHHKILALLKSGGKLLRPGYFYLFST-FGNAATPAQLQAGAAAIEILHVGT 92 (334)
T ss_dssp GGGCTTTHHHHHHHHHHHHHHCCCSCH-HHHHHHHHHHHHCCCCHHHHHHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHhCCCCcHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999987655 7999999999 9999999999999999 565 7788999999999999999
Q ss_pred HhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhc-cc----cccccccccccccceecccCCCc
Q 037594 91 VIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKA-KN----INSAVGSEGIAAGQIMDINSEGK 165 (295)
Q Consensus 91 LIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~-~~----l~~~~~~~~~~~Gq~~dl~~~~~ 165 (295)
|||||| ||+|++|||+||+|++||+++|||+||+|++.||+.++++.. +. +++++ ..++.||.+|+.+...
T Consensus 93 LiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~Gq~~dl~~~~~ 168 (334)
T 3pko_A 93 LIHDDV--IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAM--HRILQGELHQMDLNYR 168 (334)
T ss_dssp HHHHHH--HHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHTTTC
T ss_pred HHhCcc--CCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH--HHHHHHHHHHHHhccC
Confidence 999999 999999999999999999999999999999999999998643 22 66677 8899999999988654
Q ss_pred e-eeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccc
Q 037594 166 E-VSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDK 243 (295)
Q Consensus 166 ~-~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk 243 (295)
. +++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||
T Consensus 169 ~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK 248 (334)
T 3pko_A 169 EDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGV 248 (334)
T ss_dssp TTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCc
Confidence 3 78899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cCCCceeecc-----------------------------------CchhhHHHHHHHHHhhccccCCC-CCCchhhhhhh
Q 037594 244 ATYPKLVGID-----------------------------------GSKKHAKELIAEAKQELAYFDPT-RAAPLDHLVNF 287 (295)
Q Consensus 244 ~T~p~~~~le-----------------------------------~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~ 287 (295)
+|||++++++ ++++.++++.++|++.|+.+|++ .++.|.+|+++
T Consensus 249 ~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~ 328 (334)
T 3pko_A 249 YSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQLTRL 328 (334)
T ss_dssp CCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999886 46678899999999999999764 47899999999
Q ss_pred hhccCC
Q 037594 288 IVSFGN 293 (295)
Q Consensus 288 ~~~R~~ 293 (295)
+++|.+
T Consensus 329 ~~~R~~ 334 (334)
T 3pko_A 329 LLRRDH 334 (334)
T ss_dssp HTTCC-
T ss_pred HHhccC
Confidence 999974
No 24
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=6.2e-65 Score=468.04 Aligned_cols=271 Identities=25% Similarity=0.385 Sum_probs=231.7
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHh
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVI 92 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLI 92 (295)
|+|..+.. ...|++.|.+.++...++.+.++++|.+ .||||+||.|++++++++|++.+.+.++|++|||||+||||
T Consensus 3 m~~~~~~~--~~~i~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLI 80 (295)
T 3ipi_A 3 LNIEEWEE--YRYVEAGIKESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLI 80 (295)
T ss_dssp -CGGGSHH--HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH--HHHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34544444 3789999999886544567999999999 99999999999999999999999999999999999999999
Q ss_pred hcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhcc---ccccccccccccccceecccCCCceeec
Q 037594 93 QDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAK---NINSAVGSEGIAAGQIMDINSEGKEVSL 169 (295)
Q Consensus 93 hDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~---~l~~~~~~~~~~~Gq~~dl~~~~~~~~~ 169 (295)
|||| ||+|++|||+||+|++||+++|||+||+|++.||+++++...+ .+++++ ..++.||.+|+.+....+++
T Consensus 81 HDDi--~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~t~ 156 (295)
T 3ipi_A 81 HDDL--LDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYGEKVIQDFGKAG--MDMAEGEVLDLKLEDESFGE 156 (295)
T ss_dssp HHHH--HHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHH--HHHHHHHHHHHC-------C
T ss_pred HCcC--cCCCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHH--HHHHccchHHHHccCCCCCH
Confidence 9999 9999999999999999999999999999999999999885432 256666 78999999999987666889
Q ss_pred cccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCce
Q 037594 170 SELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKL 249 (295)
Q Consensus 170 ~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~ 249 (295)
++|..|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++ |+|+.+||+|||++
T Consensus 157 ~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~-----gkd~~~gk~Tlp~l 231 (295)
T 3ipi_A 157 NDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE-----GKESKFTSETLPHI 231 (295)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----C-------CCHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----CCCcccCcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998753 56789999999999
Q ss_pred ee--------ccCchhhHHHHHHHHHhhccccCCC-CCCchhhhhhhhhccCCCC
Q 037594 250 VG--------IDGSKKHAKELIAEAKQELAYFDPT-RAAPLDHLVNFIVSFGNNN 295 (295)
Q Consensus 250 ~~--------le~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~~~~R~~~~ 295 (295)
++ +++|++.++++.++|++.|+.||+. .++.|.+|++|++.|.-+|
T Consensus 232 ~al~~~~~~~le~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~~~~~~ 286 (295)
T 3ipi_A 232 YMKSTSKEEALKKSIDCVKLHVAAAKETLETFRECPARDKLFQITDYITVDMLEN 286 (295)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHTTGGGGC-
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCccc
Confidence 98 8889999999999999999999764 4688999999999987643
No 25
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=6.3e-64 Score=472.14 Aligned_cols=273 Identities=25% Similarity=0.312 Sum_probs=220.6
Q ss_pred hhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CC--chhhhhhhhhhhhhhccchh-----------------hH
Q 037594 16 VNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PG--GKRLMSTLCIASCEMIGGSQ-----------------SV 75 (295)
Q Consensus 16 ~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~--GK~lRp~l~~~~~~~~g~~~-----------------~~ 75 (295)
....++.+++.|++.|.+.+....| .+.++++|.+ .| |||+||.|++++++++|++. +.
T Consensus 10 ~~~~i~~~l~~v~~~l~~~~~~~~~-~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (348)
T 3apz_A 10 PFSLVADELSLLSNKLREMVLAEVP-KLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVR 88 (348)
T ss_dssp TTTTTHHHHHHHHHGGGGCCCCCCC-------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCh-hHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHH
Confidence 3456777888999999999877554 5999999999 77 99999999999999998642 35
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----ccccccccc
Q 037594 76 AMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEG 151 (295)
Q Consensus 76 ~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~ 151 (295)
+.++|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||+|++.||+.++++.... +++++ ..
T Consensus 89 ~~~~A~avEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~--~~ 164 (348)
T 3apz_A 89 QRGIAEITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAV--EH 164 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHhccc--cCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HH
Confidence 688999999999999999999 99999999999999999999999999999999999998864332 66777 89
Q ss_pred ccccceecccCCCce-eeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChh
Q 037594 152 IAAGQIMDINSEGKE-VSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPE 230 (295)
Q Consensus 152 ~~~Gq~~dl~~~~~~-~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~ 230 (295)
++.||.+|+.+.... +++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++
T Consensus 165 ~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~ 244 (348)
T 3apz_A 165 LVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSA 244 (348)
T ss_dssp HHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChh
Confidence 999999999887533 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh-hhhhhhccccCCCcee---------------------------------eccCchhhHHHHHHHHHhhccccCCC
Q 037594 231 MREK-TGRDMMRDKATYPKLV---------------------------------GIDGSKKHAKELIAEAKQELAYFDPT 276 (295)
Q Consensus 231 ~~GK-~~~Dl~~gk~T~p~~~---------------------------------~le~a~~~~~~~~~~A~~~L~~l~~~ 276 (295)
.+|| .|+||++||+|||+++ +++++++.++++.++|++.|+.+|..
T Consensus 245 ~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~ 324 (348)
T 3apz_A 245 SLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPET 324 (348)
T ss_dssp CTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred hcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999 9999999999999998 56778889999999999999999764
Q ss_pred -------CCCchhhhhhhhhccCC
Q 037594 277 -------RAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 277 -------~~~~L~~l~~~~~~R~~ 293 (295)
.++.|..|++++++|.+
T Consensus 325 ~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 325 DNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cccccHHHHHHHHHHHHHHHhCcC
Confidence 36789999999999974
No 26
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=2.9e-64 Score=470.40 Aligned_cols=273 Identities=23% Similarity=0.324 Sum_probs=248.5
Q ss_pred hhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhc
Q 037594 16 VNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQD 94 (295)
Q Consensus 16 ~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhD 94 (295)
+...++.+++.|++.|.+.++.. ++.+.++++|.+ .||||+||.|++++++++|++.+.+.++|+++||||+||||||
T Consensus 6 ~~~~~~~~~~~v~~~l~~~~~~~-~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHD 84 (325)
T 3aqb_B 6 YKAFLNPYIIEVEKRLYECIQSD-SETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHD 84 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 45677888999999999988764 456999999999 9999999999999999999888889999999999999999999
Q ss_pred CCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCCce-eec
Q 037594 95 DLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEGKE-VSL 169 (295)
Q Consensus 95 DI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~~~-~~~ 169 (295)
|| ||+|++|||+||+|.+||+++|||+||+|++.||+.++++.... +++++ ..++.||.+|+.+..+. +++
T Consensus 85 Di--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~ 160 (325)
T 3aqb_B 85 DY--IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTI--LEVCFGEFDQMADRFNYPVSF 160 (325)
T ss_dssp HH--HHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH--HHHHHHHHHHHHTTTCCCCCH
T ss_pred cc--ccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH--HHHHHHHHHHHHcccCCCCCH
Confidence 99 99999999999999999999999999999999999999864332 67777 89999999999987653 889
Q ss_pred cccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCCc
Q 037594 170 SELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPK 248 (295)
Q Consensus 170 ~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~ 248 (295)
++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||+
T Consensus 161 ~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~ 240 (325)
T 3aqb_B 161 TAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPL 240 (325)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred eeeccCc---------------------------------------hhhHHHHHHHHHhhccccCCC-CCCchhhhhhhh
Q 037594 249 LVGIDGS---------------------------------------KKHAKELIAEAKQELAYFDPT-RAAPLDHLVNFI 288 (295)
Q Consensus 249 ~~~le~a---------------------------------------~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~~ 288 (295)
+++++.+ ++.++++.++|++.|+.+|+. .++.|..+++++
T Consensus 241 i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~ 320 (325)
T 3aqb_B 241 MAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQLQDSNIKDYLEEIHEKM 320 (325)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9876432 355678899999999999764 467899999999
Q ss_pred hccCC
Q 037594 289 VSFGN 293 (295)
Q Consensus 289 ~~R~~ 293 (295)
++|.+
T Consensus 321 ~~R~~ 325 (325)
T 3aqb_B 321 LKRVY 325 (325)
T ss_dssp TTTTC
T ss_pred HhCcC
Confidence 99974
No 27
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=7.4e-64 Score=471.35 Aligned_cols=273 Identities=26% Similarity=0.411 Sum_probs=246.0
Q ss_pred hhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC------------CCchhhhhhhhhhhhhhccchhhHHHHHHHHH
Q 037594 16 VNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL------------PGGKRLMSTLCIASCEMIGGSQSVAMSMACAI 83 (295)
Q Consensus 16 ~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~------------~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~av 83 (295)
...+++...+.|+..|++.++..+| .+.++..|.+ .||||+||.|++++++++|++.+.++++|++|
T Consensus 5 ~~~~l~~~~~~v~~~l~~~v~~~~~-~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~av 83 (352)
T 3nf2_A 5 VTALLERGRTLATPVLRAAVDRLAP-PMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAV 83 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCT-THHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCh-HHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4678999999999999999987655 5888887764 69999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhcc-------ccccccccccccccc
Q 037594 84 ELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAK-------NINSAVGSEGIAAGQ 156 (295)
Q Consensus 84 EliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~-------~l~~~~~~~~~~~Gq 156 (295)
||||+|||||||| ||+|++|||+||+|++||+++|||+||+|++.||+.+++++.+ .+++++ ..++.||
T Consensus 84 EliH~asLiHDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~--~~l~~GQ 159 (352)
T 3nf2_A 84 ELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKAS--RSLIDGQ 159 (352)
T ss_dssp HHHHHHHHHHHHH--HHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHcCC--CCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH--HHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999999987543 166777 8999999
Q ss_pred eecccCCCce-eeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-
Q 037594 157 IMDINSEGKE-VSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK- 234 (295)
Q Consensus 157 ~~dl~~~~~~-~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK- 234 (295)
.+|+.+..+. +++++|..|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+||
T Consensus 160 ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~ 239 (352)
T 3nf2_A 160 AQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQ 239 (352)
T ss_dssp HHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSC
T ss_pred HHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCC
Confidence 9999887653 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCCCceeeccC--------------------------------------------chhhHHHHHHHHHhhc
Q 037594 235 TGRDMMRDKATYPKLVGIDG--------------------------------------------SKKHAKELIAEAKQEL 270 (295)
Q Consensus 235 ~~~Dl~~gk~T~p~~~~le~--------------------------------------------a~~~~~~~~~~A~~~L 270 (295)
.|+||++||+|||++++++. +++.+++|.++|++.|
T Consensus 240 ~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L 319 (352)
T 3nf2_A 240 TWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEAL 319 (352)
T ss_dssp TTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986542 3445678899999999
Q ss_pred cccCC--CCCCchhhhhhhhhccCC
Q 037594 271 AYFDP--TRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 271 ~~l~~--~~~~~L~~l~~~~~~R~~ 293 (295)
+.+|+ +.++.|..|++|+++|.+
T Consensus 320 ~~lp~~~~~r~~L~~la~~~~~R~~ 344 (352)
T 3nf2_A 320 DAVDMPDRVRDRFTALADFVVVRKR 344 (352)
T ss_dssp TTSCCCHHHHHHHHHHHHHHCC---
T ss_pred HhCCCCcHHHHHHHHHHHHHHhccc
Confidence 99965 357899999999999975
No 28
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-62 Score=460.11 Aligned_cols=266 Identities=23% Similarity=0.278 Sum_probs=237.3
Q ss_pred hhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCC
Q 037594 20 KALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPC 98 (295)
Q Consensus 20 l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~ 98 (295)
.....+.|++.|.+.+... ++.+.++++|++ .||||+||.|++++++++|++.+.++++|++|||||+||||||||
T Consensus 5 ~~~~~~~v~~~l~~~~~~~-~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi-- 81 (330)
T 1wmw_A 5 PEAIRQALQERLLARLDHP-DPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDI-- 81 (330)
T ss_dssp HHHHHHHHHHHHHHHTCCS-SHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccc--
Confidence 3556778999999988664 457999999999 999999999999999999998888999999999999999999999
Q ss_pred CCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhc-----cc----cccccccccccccceecccC-CCc--e
Q 037594 99 LDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKA-----KN----INSAVGSEGIAAGQIMDINS-EGK--E 166 (295)
Q Consensus 99 ~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~-----~~----l~~~~~~~~~~~Gq~~dl~~-~~~--~ 166 (295)
||+|++|||+||+|.+||+++|||+||+|++.||+.++++.. .. +++++ ..++.||.+|+.+ ..+ .
T Consensus 82 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~ 159 (330)
T 1wmw_A 82 EDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVV--RRTAYGQHLDLLWTLGGTFD 159 (330)
T ss_dssp HHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH--HHHHHHHHHHHHHHHSSSCC
T ss_pred ccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCCC
Confidence 999999999999999999999999999999999999998643 11 56667 8999999999988 554 3
Q ss_pred eeccccchhhhccccCe-eeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhcccc
Q 037594 167 VSLSELNFIHRHKTGKF-IEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKA 244 (295)
Q Consensus 167 ~~~~~~~~i~~~KTa~L-f~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~ 244 (295)
+++++|..|+.+|||+| |++||++|++++|++++.. +++||.++|+||||+||++|++++++ +|| .|+|+++||+
T Consensus 160 ~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~ 236 (330)
T 1wmw_A 160 LRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKR 236 (330)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCC
T ss_pred CCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCC
Confidence 88999999999999999 9999999999999988766 99999999999999999999999999 999 9999999999
Q ss_pred CCCceeeccC----------------------------------------chhhHHHHHHHHHhhcc----ccCCC-CCC
Q 037594 245 TYPKLVGIDG----------------------------------------SKKHAKELIAEAKQELA----YFDPT-RAA 279 (295)
Q Consensus 245 T~p~~~~le~----------------------------------------a~~~~~~~~~~A~~~L~----~l~~~-~~~ 279 (295)
|||++++++. +++.+++|.++|++.|+ .+|.+ .++
T Consensus 237 T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~~ 316 (330)
T 1wmw_A 237 TLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALD 316 (330)
T ss_dssp CHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHH
T ss_pred CHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHH
Confidence 9999987532 23457788999999999 88753 467
Q ss_pred chhhhhhhhhccCC
Q 037594 280 PLDHLVNFIVSFGN 293 (295)
Q Consensus 280 ~L~~l~~~~~~R~~ 293 (295)
.|..+++++++|.+
T Consensus 317 ~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 317 HLRGLLAALVERRA 330 (330)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhccC
Confidence 89999999999974
No 29
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=1.8e-61 Score=459.05 Aligned_cols=270 Identities=23% Similarity=0.343 Sum_probs=217.9
Q ss_pred hhhhHHhHHHHhhhcCCCC-------Ch--HhHHHHhhhcC-CCchhhhhhhhhhhhhhccch------hhHHHHHHHHH
Q 037594 20 KALKAKQINEALDEAVPLP-------HP--AILHEAMRYSL-PGGKRLMSTLCIASCEMIGGS------QSVAMSMACAI 83 (295)
Q Consensus 20 l~~~~~~i~~~l~~~~~~~-------~~--~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~------~~~~~~~A~av 83 (295)
+......|++.|++++... .| ..+.+++.|++ .||||+||.||+++++++|++ .+.++++|++|
T Consensus 18 ~~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~~~Aaai 97 (380)
T 3lk5_A 18 LDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASL 97 (380)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCccccCCHHHHHHHHHHH
Confidence 4445555555555554321 23 24778888888 999999999999999999874 68899999999
Q ss_pred HHHHHHHHhhcCCCCCCccccccCCCCCCcc----------------cchhhHHHhHhHHhHhhhhhhhhhhcc-----c
Q 037594 84 ELLVTMAVIQDDLPCLDNDDLRRGKPSNHKV----------------FGEATAILACQALHCLAMQHIAIIKAK-----N 142 (295)
Q Consensus 84 EliH~asLIhDDI~~~D~~~~RRG~pt~h~~----------------~G~~~Ail~gd~L~~~a~~~l~~l~~~-----~ 142 (295)
||||++||||||| ||+|++|||+||+|++ ||+++|||+||+|+++|++++++...+ .
T Consensus 98 EliH~asLIHDDI--mD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~ 175 (380)
T 3lk5_A 98 EFIQACALIHDDI--IDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALAR 175 (380)
T ss_dssp HHHHHHHHHHHHH--HTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred HHHHHHHHHHCCC--cCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999 9999999999999997 599999999999999999999985322 1
Q ss_pred ----cccccccccccccceecccCCCce-eeccccchhhhccccCe-eeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHH
Q 037594 143 ----INSAVGSEGIAAGQIMDINSEGKE-VSLSELNFIHRHKTGKF-IEASIVSGVIIGGGNEEEIERMRNFGKYVGMAY 216 (295)
Q Consensus 143 ----l~~~~~~~~~~~Gq~~dl~~~~~~-~~~~~~~~i~~~KTa~L-f~~~~~~ga~lag~~~~~~~~l~~~g~~lG~af 216 (295)
++.+. ..++.||.+|+.+.... +++++|..|+++|||+| |++||++|++++|++++.++.+++||.++|+||
T Consensus 176 ~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AF 253 (380)
T 3lk5_A 176 TRDAWRGMR--TEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAF 253 (380)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 33344 67899999999876543 68899999999999999 999999999999999999999999999999999
Q ss_pred HHHhhhhHhcCChhhhhh-hhhhhhccccCCCceeec----------------------------------------cCc
Q 037594 217 QLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKLVGI----------------------------------------DGS 255 (295)
Q Consensus 217 Qi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~~~~l----------------------------------------e~a 255 (295)
||+||++|++++++.+|| .|+||++||+|||+++++ +++
T Consensus 254 QI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~ 333 (380)
T 3lk5_A 254 QLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEV 333 (380)
T ss_dssp HHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHH
Confidence 999999999999999999 999999999999999854 445
Q ss_pred hhhHHHHHHHHHhhccccCC--CCCCchhhhhhhhhccCC
Q 037594 256 KKHAKELIAEAKQELAYFDP--TRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 256 ~~~~~~~~~~A~~~L~~l~~--~~~~~L~~l~~~~~~R~~ 293 (295)
++.+++|.++|++.|+.+|. +.++.|.+|++++..|..
T Consensus 334 ~~~~~~~~~~A~~~L~~lp~~~~~r~~L~~La~~~~~~~~ 373 (380)
T 3lk5_A 334 EQRISQLTESGLAHLDDVDIPDEVRAQLRALAIRSTERRE 373 (380)
T ss_dssp HHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhc
Confidence 56788999999999999974 357899999999999853
No 30
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=6.5e-61 Score=445.18 Aligned_cols=261 Identities=21% Similarity=0.260 Sum_probs=208.0
Q ss_pred hhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchh--hHHHHHHHHHHHHHHHHHhhcCCC
Q 037594 21 ALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQ--SVAMSMACAIELLVTMAVIQDDLP 97 (295)
Q Consensus 21 ~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~--~~~~~~A~avEliH~asLIhDDI~ 97 (295)
++.++.|++.|.+.+....++.+.+ .|.+ .||||+||.||+++++..+... +.+.++|++|||||+||||||||
T Consensus 3 ~~~~~~i~~~l~~~~~~~~~~~~~~--~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDi- 79 (315)
T 3tc1_A 3 EKQLKAIQNKIASWIKEIESGFIDE--LFSKIGPSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTASLLHDDV- 79 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHH--HHTTCCCCCCHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHhhcCcHHHHH--HHHhcCCcccHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHcCC-
Confidence 3456778888888775322223333 5777 9999999999999999554443 67889999999999999999999
Q ss_pred CCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhcc---ccccccccccccccceecccCCCce-eeccccc
Q 037594 98 CLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAK---NINSAVGSEGIAAGQIMDINSEGKE-VSLSELN 173 (295)
Q Consensus 98 ~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~---~l~~~~~~~~~~~Gq~~dl~~~~~~-~~~~~~~ 173 (295)
||+|++|||+||+|++||+++|||+||+|++.||+.+++++.. .+++++ ..++.||.+|+.+.... +++++|.
T Consensus 80 -~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~ 156 (315)
T 3tc1_A 80 -IDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMGELIAQALSNAV--LRLSRGEIEDVFVGECFNSDKQKYW 156 (315)
T ss_dssp -C----------------CCSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--HHHHHHHHHHHHHTTSCCCCHHHHH
T ss_pred -CCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHH--HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999986521 166677 88999999999887653 8899999
Q ss_pred hhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCCceeec
Q 037594 174 FIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKLVGI 252 (295)
Q Consensus 174 ~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~~~~l 252 (295)
.|+++|||+||++||++|++++|++ .+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||+++++
T Consensus 157 ~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al 233 (315)
T 3tc1_A 157 RILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLY 233 (315)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHH
Confidence 9999999999999999999999988 578999999999999999999999999999999 999999999999999854
Q ss_pred ------------------------------------cCchhhHHHHHHHHHhhccccCCC-CCCchhhhhhhhhc
Q 037594 253 ------------------------------------DGSKKHAKELIAEAKQELAYFDPT-RAAPLDHLVNFIVS 290 (295)
Q Consensus 253 ------------------------------------e~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~~~~ 290 (295)
+++++.++++.++|++.|+.+|++ .++.|..|++|+.-
T Consensus 234 ~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~~r~~L~~l~~~~~~ 308 (315)
T 3tc1_A 234 EKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQDVISRTFL 308 (315)
T ss_dssp TTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHCC---
T ss_pred HhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 444567789999999999999764 57889999988753
No 31
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=2.5e-61 Score=445.30 Aligned_cols=225 Identities=22% Similarity=0.336 Sum_probs=204.5
Q ss_pred hhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccc-hhhHHHHHHHHHHHHHHHHHhhcCCC
Q 037594 20 KALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGG-SQSVAMSMACAIELLVTMAVIQDDLP 97 (295)
Q Consensus 20 l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~-~~~~~~~~A~avEliH~asLIhDDI~ 97 (295)
+..+++.|++.|.+.+....| ++++|.+ .||||+||.|++++++++|+ +.+.+.++|+++||||+||||||||
T Consensus 9 ~~~~l~~v~~~l~~~~~~~~~----~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~A~avEliH~asLiHDDi- 83 (299)
T 1v4e_A 9 NSYELEKVKERIEQILSQFFP----EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDV- 83 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC----HHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhccCCH----HHHHHHHhCCCCcHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHhhCCC-
Confidence 556678888888887754333 8999999 99999999999999999998 7788999999999999999999999
Q ss_pred CCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCCceeeccccc
Q 037594 98 CLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEGKEVSLSELN 173 (295)
Q Consensus 98 ~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~~ 173 (295)
||+|++|||+||+|.+||+++|||+||+|++.||+.++++.... +++++ ..++.||.+|+.+..+.+++++|.
T Consensus 84 -~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~y~ 160 (299)
T 1v4e_A 84 -IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVI--GKMSEAELIEQLSRYKPITKEEYL 160 (299)
T ss_dssp -HHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH--HHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred -CCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH--HHHhhhHHHHHHccCCCCCHHHHH
Confidence 99999999999999999999999999999999999999864332 67777 899999999998876547899999
Q ss_pred hhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCCceeec
Q 037594 174 FIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKLVGI 252 (295)
Q Consensus 174 ~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~~~~l 252 (295)
.|+.+|||+||++||++|++++|+++ +.+++||.++|+||||+||++|++++ +.+|| .|+|+++||+|||+++++
T Consensus 161 ~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~al 236 (299)
T 1v4e_A 161 RIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTAM 236 (299)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHHH
Confidence 99999999999999999999999877 78999999999999999999999999 99999 999999999999999876
Q ss_pred cCch
Q 037594 253 DGSK 256 (295)
Q Consensus 253 e~a~ 256 (295)
+.+.
T Consensus 237 ~~~~ 240 (299)
T 1v4e_A 237 EKFP 240 (299)
T ss_dssp HHCH
T ss_pred HhCh
Confidence 5443
No 32
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=2.6e-60 Score=450.91 Aligned_cols=275 Identities=16% Similarity=0.233 Sum_probs=236.8
Q ss_pred chhhhhhhhHHhHHHHhhhcCCCC----ChHhHHHHhhhcCCCchhhhhhhhhhhhhhccchh----h---HHHHHHHHH
Q 037594 15 QVNEYKALKAKQINEALDEAVPLP----HPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQ----S---VAMSMACAI 83 (295)
Q Consensus 15 ~~~~~l~~~~~~i~~~l~~~~~~~----~~~~l~~~~~~~~~~GK~lRp~l~~~~~~~~g~~~----~---~~~~~A~av 83 (295)
.+..++......|++.++..++.. .++.+.++++|.+.||||+||.||+++++++|++. + .+.++|+||
T Consensus 34 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~y~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~a~~~A~av 113 (374)
T 2qis_A 34 EKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCV 113 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CGGGHHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHH
Confidence 467788888889999998887541 34678899999889999999999999999998742 2 577899999
Q ss_pred HHHHHHHHhhcCCCCCCccccccCCCCCCcccchh-hHHHhHhHHhHhhhhhhhhhhc--c---c----ccccccccccc
Q 037594 84 ELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEA-TAILACQALHCLAMQHIAIIKA--K---N----INSAVGSEGIA 153 (295)
Q Consensus 84 EliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~-~Ail~gd~L~~~a~~~l~~l~~--~---~----l~~~~~~~~~~ 153 (295)
||||+|||||||| ||+|++|||+||+|++||++ +||++||++++.+|+++++... + . +++++ ..++
T Consensus 114 EliH~asLIHDDI--mD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~ 189 (374)
T 2qis_A 114 ELLQAFFLVADDI--MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSS--YQTE 189 (374)
T ss_dssp HHHHHHHHHHHHH--HTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHccc--cCCCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH--HHHH
Confidence 9999999999999 99999999999999999999 9999999999999999987521 1 1 56666 8899
Q ss_pred ccceecccCCCc------eeeccccchhhhccccCe-eeeeeeeeeEecC-CCHHHHHHHhhhhhhhHHHHHHHhhhhHh
Q 037594 154 AGQIMDINSEGK------EVSLSELNFIHRHKTGKF-IEASIVSGVIIGG-GNEEEIERMRNFGKYVGMAYQLWNDIVDV 225 (295)
Q Consensus 154 ~Gq~~dl~~~~~------~~~~~~~~~i~~~KTa~L-f~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~lD~ 225 (295)
.||.+|+.+... .+++++|..|+.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|+
T Consensus 190 ~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~ 269 (374)
T 2qis_A 190 IGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDL 269 (374)
T ss_dssp HHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999987653 268899999999999999 9999999999999 89999999999999999999999999999
Q ss_pred cCChhhhhhhhhhhhccccCCCceeeccCc------------------------------------hhhHHHHHHHHHhh
Q 037594 226 IGSPEMREKTGRDMMRDKATYPKLVGIDGS------------------------------------KKHAKELIAEAKQE 269 (295)
Q Consensus 226 ~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a------------------------------------~~~~~~~~~~A~~~ 269 (295)
+++++.+||.|+|+++||+|||++++++.+ ++.++++.++|++.
T Consensus 270 ~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~ 349 (374)
T 2qis_A 270 FGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMAL 349 (374)
T ss_dssp HSCHHHHCSCCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhhcCCchhHHHcCCccHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999976543 22356788899999
Q ss_pred ccccCCC-CCCchhhhhhhhhccCC
Q 037594 270 LAYFDPT-RAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 270 L~~l~~~-~~~~L~~l~~~~~~R~~ 293 (295)
|+.+|+. .++.|..+++++++|.+
T Consensus 350 L~~lp~~~~k~~L~~l~~~i~~R~k 374 (374)
T 2qis_A 350 IEQYAAPLPPAVFLGLARKIYKRRK 374 (374)
T ss_dssp HHHHCTTSCHHHHHHHHHHHC----
T ss_pred HHhCCCchHHHHHHHHHHHHHcCcC
Confidence 9999754 56899999999999975
No 33
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=9.2e-61 Score=439.29 Aligned_cols=263 Identities=19% Similarity=0.220 Sum_probs=237.5
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcCCCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhh
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQ 93 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIh 93 (295)
|.+..++++..+.|++.|.+.++...++.+.++++|.+.||||+||.|++++++++|++.+.+.++|+++||||+|||||
T Consensus 9 ~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIH 88 (289)
T 2azj_A 9 MSIIEFWLEAKATIDRLIEQFLNSNRDWDLVDISSYILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLAL 88 (289)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 67888999999999999999885432446999999987899999999999999999998888999999999999999999
Q ss_pred cCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhh-hhhhcc---ccccccccccccccceecccCCCceeec
Q 037594 94 DDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHI-AIIKAK---NINSAVGSEGIAAGQIMDINSEGKEVSL 169 (295)
Q Consensus 94 DDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l-~~l~~~---~l~~~~~~~~~~~Gq~~dl~~~~~~~~~ 169 (295)
||| ||+|++|||+||+|.+||+++|||+||+|++.||+.+ +++++. .+++++ ..++.||.+|+.+ +
T Consensus 89 DDi--~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~------~ 158 (289)
T 2azj_A 89 CDI--VDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALNTSIELW--KDTSVGALRDMYD------N 158 (289)
T ss_dssp HHH--HTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHHHHHHHHTTTT------T
T ss_pred CCC--CCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH--HHHHHHHHHHHhh------H
Confidence 999 9999999999999999999999999999999999999 875432 156666 8899999999975 6
Q ss_pred cccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCce
Q 037594 170 SELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKL 249 (295)
Q Consensus 170 ~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~ 249 (295)
++|.+|+++|||+||++||++|++++ ++++..+.+++||.++|+||||+||++|++++ || .|+++||+|||++
T Consensus 159 ~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K--~dl~~gk~Tlp~l 231 (289)
T 2azj_A 159 SDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KV--EEIDGSAKQLFKY 231 (289)
T ss_dssp SCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CT--TTCCTTGGGGHHH
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CC--hhhhcCcccHHHH
Confidence 78999999999999999999999999 89888999999999999999999999999996 34 4899999999999
Q ss_pred e---eccCc-hhhHHHHHHHHHhhccccCC-C-CCCchhhhhhhhhccCC
Q 037594 250 V---GIDGS-KKHAKELIAEAKQELAYFDP-T-RAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 250 ~---~le~a-~~~~~~~~~~A~~~L~~l~~-~-~~~~L~~l~~~~~~R~~ 293 (295)
+ +++.+ +..++++.++|++.|+.+|. + .++.|.++++|+++|..
T Consensus 232 ~~~~g~~~a~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~ 281 (289)
T 2azj_A 232 YREGKLEEYVRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGLL 281 (289)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHTHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhccc
Confidence 9 76666 67899999999999999975 3 56889999999999964
No 34
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=3.9e-60 Score=448.48 Aligned_cols=277 Identities=17% Similarity=0.200 Sum_probs=234.8
Q ss_pred ccchhhhhhhhHHhHHHHhhhcCC-----CCChHhHHHHhhhcCCCchhhhhhhhhhhhhhccch----hhH---HHH--
Q 037594 13 FFQVNEYKALKAKQINEALDEAVP-----LPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGS----QSV---AMS-- 78 (295)
Q Consensus 13 ~~~~~~~l~~~~~~i~~~l~~~~~-----~~~~~~l~~~~~~~~~~GK~lRp~l~~~~~~~~g~~----~~~---~~~-- 78 (295)
|+++..++..+...++..++...+ ...++.+.++++|.+.||||+||.|++++++++|++ .+. +++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~a 80 (362)
T 1yhl_A 1 MASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDA 80 (362)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhCCCcCCChhhhHHHHHHH
Confidence 345566666666666666665431 112457888889888999999999999999998875 222 344
Q ss_pred --HHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccch--hhHHHhHhHHhHhhhhhhhhhhcc---------cccc
Q 037594 79 --MACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGE--ATAILACQALHCLAMQHIAIIKAK---------NINS 145 (295)
Q Consensus 79 --~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~--~~Ail~gd~L~~~a~~~l~~l~~~---------~l~~ 145 (295)
+|++|||||+|||||||| ||+|++|||+||+|++||+ ++|||+||+|++.|+++++++..+ .+++
T Consensus 81 ~~~a~avEliH~asLiHDDI--~D~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 158 (362)
T 1yhl_A 81 CVGGWMIEFLQAHYLVEDDI--MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQK 158 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc--cCCCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 789999999999999999 9999999999999999999 589999999999999999885211 1566
Q ss_pred ccccccccccceecccCC-----------C--c----eeeccccchhhhccccCe-eeeeeeeeeEecC-CCHHHHHHHh
Q 037594 146 AVGSEGIAAGQIMDINSE-----------G--K----EVSLSELNFIHRHKTGKF-IEASIVSGVIIGG-GNEEEIERMR 206 (295)
Q Consensus 146 ~~~~~~~~~Gq~~dl~~~-----------~--~----~~~~~~~~~i~~~KTa~L-f~~~~~~ga~lag-~~~~~~~~l~ 206 (295)
++ ..++.||++|+.+. . + .+++++|..|+.+|||+| |++||++|++++| ++++..+.++
T Consensus 159 ~~--~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~ 236 (362)
T 1yhl_A 159 VD--YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVE 236 (362)
T ss_dssp HH--HHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHH
T ss_pred HH--HHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66 88999999999887 2 2 268899999999999999 9999999999999 8888889999
Q ss_pred hhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCc-------------------------------
Q 037594 207 NFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGS------------------------------- 255 (295)
Q Consensus 207 ~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a------------------------------- 255 (295)
+||.++|+||||+||++|++++++.+||.|+||++||+|||++++++.+
T Consensus 237 ~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g 316 (362)
T 1yhl_A 237 RVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEAN 316 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999865543
Q ss_pred -----hhhHHHHHHHHHhhccccCCC-CC--CchhhhhhhhhccCC
Q 037594 256 -----KKHAKELIAEAKQELAYFDPT-RA--APLDHLVNFIVSFGN 293 (295)
Q Consensus 256 -----~~~~~~~~~~A~~~L~~l~~~-~~--~~L~~l~~~~~~R~~ 293 (295)
++.++++.++|++.|+.+|+. .+ +.|..+++++++|.+
T Consensus 317 ~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 317 LQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHhccC
Confidence 345668888999999999754 46 789999999999975
No 35
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=1.3e-60 Score=441.06 Aligned_cols=250 Identities=20% Similarity=0.258 Sum_probs=215.9
Q ss_pred hcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCC
Q 037594 33 EAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSN 111 (295)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D~~~~RRG~pt~ 111 (295)
+.+.. .++.+.++++|.+ .||||+||.|++++++++|++.+.+.++|+++||||+|||||||| ||+|++|||+||+
T Consensus 4 k~~~~-~~~~l~~~~~y~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi--~D~s~~RRG~pt~ 80 (301)
T 2q80_A 4 KTQET-VQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDI--EDNSKLRRGFPVA 80 (301)
T ss_dssp ---CC-HHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEECH
T ss_pred cccCC-CcHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCCCCcch
Confidence 34434 3457999999999 999999999999999999988888999999999999999999999 9999999999999
Q ss_pred CcccchhhHHHhHhHHhHhhhhhhhhhhccc----cccccccccccccceecccCCCc--eeeccccchhhhccccCeee
Q 037594 112 HKVFGEATAILACQALHCLAMQHIAIIKAKN----INSAVGSEGIAAGQIMDINSEGK--EVSLSELNFIHRHKTGKFIE 185 (295)
Q Consensus 112 h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~----l~~~~~~~~~~~Gq~~dl~~~~~--~~~~~~~~~i~~~KTa~Lf~ 185 (295)
|.+||+++|||+||+|+++|++.++++..+. +++++ ..++.||.+|+.+... .+++++|..|+++|||+||+
T Consensus 81 h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~ 158 (301)
T 2q80_A 81 HSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQL--LELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFG 158 (301)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHH--HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHH
Confidence 9999999999999999999999999865433 56667 8899999999987433 27899999999999999999
Q ss_pred eeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCCceeecc-----------
Q 037594 186 ASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYPKLVGID----------- 253 (295)
Q Consensus 186 ~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p~~~~le----------- 253 (295)
+||++|+++++.++ .+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||++++++
T Consensus 159 ~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~ 234 (301)
T 2q80_A 159 LAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNI 234 (301)
T ss_dssp HHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHH
Confidence 99999999999774 4899999999999999999999999999999 9999999999999998654
Q ss_pred -------------------------CchhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccCC
Q 037594 254 -------------------------GSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 254 -------------------------~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (295)
++++.+++|.++|++.|+.+|... .|..+++++..|.+
T Consensus 235 l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~--~L~~l~~~l~~~~~ 297 (301)
T 2q80_A 235 LRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP--ELVALVKHLSKMFK 297 (301)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCC
T ss_pred HhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhc
Confidence 445667888999999999997532 49999999998876
No 36
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=1.3e-59 Score=445.06 Aligned_cols=274 Identities=18% Similarity=0.254 Sum_probs=238.5
Q ss_pred hhhhhhhhHHhHHHHhhhcCCCC----ChHhHHHHhhhcCCCchhhhhhhhhhhhhhccch----h---hHHHHHHHHHH
Q 037594 16 VNEYKALKAKQINEALDEAVPLP----HPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGS----Q---SVAMSMACAIE 84 (295)
Q Consensus 16 ~~~~l~~~~~~i~~~l~~~~~~~----~~~~l~~~~~~~~~~GK~lRp~l~~~~~~~~g~~----~---~~~~~~A~avE 84 (295)
...++......+++.++..++.. .++++.++++|.+.||||+||.||+++++++|++ . +.+.++|++||
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~y~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~A~aiE 107 (367)
T 1uby_A 28 REEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNAPGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIE 107 (367)
T ss_dssp HHHHHHTHHHHHHHHHTTTSSCTTTHHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHhhhcCCCcchhHHHHHHHHHHhCCCccCChhhHHHHHHHHHHHH
Confidence 45677777777777777766421 2468999999988999999999999999999863 2 25789999999
Q ss_pred HHHHHHHhhcCCCCCCccccccCCCCCCcccchh-hHHHhHhHHhHhhhhhhhhhhcc-----c----cccccccccccc
Q 037594 85 LLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEA-TAILACQALHCLAMQHIAIIKAK-----N----INSAVGSEGIAA 154 (295)
Q Consensus 85 liH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~-~Ail~gd~L~~~a~~~l~~l~~~-----~----l~~~~~~~~~~~ 154 (295)
|||+|||||||| ||+|++|||+||+|++||++ ++|+.|+++++.+|+++++...+ . +++++ ..++.
T Consensus 108 liH~asLiHDDI--mD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~ 183 (367)
T 1uby_A 108 LFQAASLVADDI--MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTA--YQTEL 183 (367)
T ss_dssp HHHHHHHHHHHH--HHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHhCcc--cCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH--HHHHH
Confidence 999999999999 99999999999999999999 99999999999999999885211 1 56666 78999
Q ss_pred cceecccCCCc------eeeccccchhhhccccCe-eeeeeeeeeEecC-CCHHHHHHHhhhhhhhHHHHHHHhhhhHhc
Q 037594 155 GQIMDINSEGK------EVSLSELNFIHRHKTGKF-IEASIVSGVIIGG-GNEEEIERMRNFGKYVGMAYQLWNDIVDVI 226 (295)
Q Consensus 155 Gq~~dl~~~~~------~~~~~~~~~i~~~KTa~L-f~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~lD~~ 226 (295)
||.+|+.+... .+++++|..|+.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++
T Consensus 184 GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~ 263 (367)
T 1uby_A 184 GQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCF 263 (367)
T ss_dssp HHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987542 268899999999999999 9999999999999 899999999999999999999999999999
Q ss_pred CChhhhhhhhhhhhccccCCCceeeccCch------------------------------------hhHHHHHHHHHhhc
Q 037594 227 GSPEMREKTGRDMMRDKATYPKLVGIDGSK------------------------------------KHAKELIAEAKQEL 270 (295)
Q Consensus 227 ~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~------------------------------------~~~~~~~~~A~~~L 270 (295)
++++.+||.|+||++||+|||++++++.+. +.++++.++|++.|
T Consensus 264 gd~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L 343 (367)
T 1uby_A 264 GDPALTGAVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELI 343 (367)
T ss_dssp CCTTCSSCCCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCCchhhHHcCCchHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876431 34677889999999
Q ss_pred cccCC-CCCCchhhhhhhhhccCC
Q 037594 271 AYFDP-TRAAPLDHLVNFIVSFGN 293 (295)
Q Consensus 271 ~~l~~-~~~~~L~~l~~~~~~R~~ 293 (295)
+.+|+ +.++.|..+++++.+|.+
T Consensus 344 ~~lp~~~~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 344 EKHSNRLPKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp HHHCSSSCTHHHHHHHHHHCCCCC
T ss_pred HhCCCcHHHHHHHHHHHHHHhCcC
Confidence 99975 357899999999999975
No 37
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=6.8e-60 Score=443.12 Aligned_cols=261 Identities=18% Similarity=0.270 Sum_probs=202.8
Q ss_pred HhHHHHhhhcCCC--CChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 037594 25 KQINEALDEAVPL--PHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDN 101 (295)
Q Consensus 25 ~~i~~~l~~~~~~--~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D~ 101 (295)
.+|++.+.+.+.. ..++.+.++++|++ .||||+||.|++++++++|++.+.+.++|+++||||+|||||||| ||+
T Consensus 8 ~~v~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDI--~D~ 85 (340)
T 2e8v_A 8 AKIDELINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDI--EDN 85 (340)
T ss_dssp HHHHHHHTSCCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HTT
T ss_pred HHHHHHHHhcccccccChHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCcc--ccC
Confidence 3588888887643 13467999999999 999999999999999999988888999999999999999999999 999
Q ss_pred cccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhccc---------cccccccccccccceecccCCCc----eee
Q 037594 102 DDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN---------INSAVGSEGIAAGQIMDINSEGK----EVS 168 (295)
Q Consensus 102 ~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~~---------l~~~~~~~~~~~Gq~~dl~~~~~----~~~ 168 (295)
|++|||+||+|.+||+++|||+||+|++.||+.++++..+. +++++ ..++.||.+|+.+... .++
T Consensus 86 s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~t 163 (340)
T 2e8v_A 86 APLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEEL--INLHRGQGLDIYWRDFLPEIIPT 163 (340)
T ss_dssp CSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSTTSCCCC
T ss_pred CCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH--HHHHHHHHHHHHhhcccccCCCC
Confidence 99999999999999999999999999999999999865432 45666 8899999999976532 268
Q ss_pred ccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhh-hhhhhhccccCCC
Q 037594 169 LSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREK-TGRDMMRDKATYP 247 (295)
Q Consensus 169 ~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK-~~~Dl~~gk~T~p 247 (295)
+++|..|+++|||+||++||++|++++|+++ ..+.+++||.++|+||||+||++|++++++.+|| .|+||++||+|||
T Consensus 164 ~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp 242 (340)
T 2e8v_A 164 QEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFP 242 (340)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHH
Confidence 8999999999999999999999999999887 5789999999999999999999999999999999 9999999999999
Q ss_pred ceeeccC-------------------------------------------chhhHHHHHHHHHhh-----ccccCC-C--
Q 037594 248 KLVGIDG-------------------------------------------SKKHAKELIAEAKQE-----LAYFDP-T-- 276 (295)
Q Consensus 248 ~~~~le~-------------------------------------------a~~~~~~~~~~A~~~-----L~~l~~-~-- 276 (295)
++++++. +++.+++|.++|++. |+.+|+ +
T Consensus 243 ~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~~ 322 (340)
T 2e8v_A 243 IVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDT 322 (340)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCccc
Confidence 9975542 234456677788888 888853 3
Q ss_pred ---CCCchhhhhhhhhc
Q 037594 277 ---RAAPLDHLVNFIVS 290 (295)
Q Consensus 277 ---~~~~L~~l~~~~~~ 290 (295)
.++.|..|++++.+
T Consensus 323 ~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 323 ATNLHDELLYIIDHLSE 339 (340)
T ss_dssp -----------------
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 56788888888764
No 38
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.7e-59 Score=447.18 Aligned_cols=275 Identities=18% Similarity=0.221 Sum_probs=217.6
Q ss_pred ccccchhhhhhhhHHhHHHHhhhcCCCCChH-----hHHHHhhhcCCCchhhhhhhhhhhhhhccch------hhHHHHH
Q 037594 11 PKFFQVNEYKALKAKQINEALDEAVPLPHPA-----ILHEAMRYSLPGGKRLMSTLCIASCEMIGGS------QSVAMSM 79 (295)
Q Consensus 11 ~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~-----~l~~~~~~~~~~GK~lRp~l~~~~~~~~g~~------~~~~~~~ 79 (295)
+.+..|...+.+..+.|.+.|.+......|. .+..+++|.+.||||+||+||+++++++|+. .+.++++
T Consensus 31 ~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~GGKRlRP~l~l~~~~~~~~~~~~~~~~~~~~~~ 110 (395)
T 3mav_A 31 SGLAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACL 110 (395)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 3556788999999999999999876443332 3445567777999999999999999998763 3678999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHh--Hhhhhhhhhhhcc---------ccccccc
Q 037594 80 ACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALH--CLAMQHIAIIKAK---------NINSAVG 148 (295)
Q Consensus 80 A~avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~--~~a~~~l~~l~~~---------~l~~~~~ 148 (295)
|+||||||+|||||||| ||+|++|||+||+|++||+++||++||+|+ +.++.++...... .++++.
T Consensus 111 A~aiEliH~asLiHDDI--mD~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~- 187 (395)
T 3mav_A 111 AWCIEILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDAT- 187 (395)
T ss_dssp HHHHHHHHHHHHHHHHH--HTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhHH--hcCCCCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-
Confidence 99999999999999999 999999999999999999999999999876 4567776653221 155666
Q ss_pred cccccccceecccCCCc-------------------------eeeccccchhhhccccCe-eeeeeeeeeEecCCC--HH
Q 037594 149 SEGIAAGQIMDINSEGK-------------------------EVSLSELNFIHRHKTGKF-IEASIVSGVIIGGGN--EE 200 (295)
Q Consensus 149 ~~~~~~Gq~~dl~~~~~-------------------------~~~~~~~~~i~~~KTa~L-f~~~~~~ga~lag~~--~~ 200 (295)
..++.||.+|+.+... .+++++|..|+.+|||+| |.+||.+|++++|++ +.
T Consensus 188 -~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~ 266 (395)
T 3mav_A 188 -LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNL 266 (395)
T ss_dssp -HHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCT
T ss_pred -HHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhH
Confidence 7899999999876432 156788999999999999 999999999999874 45
Q ss_pred HHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccC--------------------------
Q 037594 201 EIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDG-------------------------- 254 (295)
Q Consensus 201 ~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~-------------------------- 254 (295)
..+.+++||.++|+||||+||++|++++++.+||+|+||++||+|||++++++.
T Consensus 267 ~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~ 346 (395)
T 3mav_A 267 IYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDS 346 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999986543
Q ss_pred ----------chhhHHHHHHHHHhhccccCCCCCCchhhhhhhhhccC
Q 037594 255 ----------SKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFG 292 (295)
Q Consensus 255 ----------a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~ 292 (295)
+++.++++.++|.+.|+.+|. +.++.+.+++++|.
T Consensus 347 l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~---~~l~~ll~~lle~i 391 (395)
T 3mav_A 347 LYEQYKIRKHYESYEKAQKAKILSAINELHH---EGIEYVLKYLLEIL 391 (395)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHHC
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHH
Confidence 344566777888888888764 35666777776654
No 39
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.8e-59 Score=445.79 Aligned_cols=275 Identities=19% Similarity=0.208 Sum_probs=223.4
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCCCh-----HhHHHHhhhcCCCchhhhhhhhhhhhhhccch------hhHHHHHHHH
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLPHP-----AILHEAMRYSLPGGKRLMSTLCIASCEMIGGS------QSVAMSMACA 82 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~~~-----~~l~~~~~~~~~~GK~lRp~l~~~~~~~~g~~------~~~~~~~A~a 82 (295)
..|..++.+..+.|.+.+........+ +++.++++|.+.||||+||+||+++++++|++ .+.+.++|+|
T Consensus 34 ~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~GGKrlRp~Lvl~~~~~~g~~~~~~~~~~~a~~lA~a 113 (395)
T 2ihi_A 34 AFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWC 113 (395)
T ss_dssp -CTTTTHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhhhhhHHHHHHHHHHhhccCcccHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Confidence 457777788888888888774322123 56778889988999999999999999999874 3578899999
Q ss_pred HHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhh--HHHhHhHHhHhhhhhhhhhh-cc----c----ccccccccc
Q 037594 83 IELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEAT--AILACQALHCLAMQHIAIIK-AK----N----INSAVGSEG 151 (295)
Q Consensus 83 vEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~--Ail~gd~L~~~a~~~l~~l~-~~----~----l~~~~~~~~ 151 (295)
|||||+|||||||| ||+|++|||+||||+.||++. ||++||+|++.+++++++.. .. . +++++ ..
T Consensus 114 iEliH~asLIHDDI--mD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~--~~ 189 (395)
T 2ihi_A 114 IEILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDAT--LK 189 (395)
T ss_dssp HHHHHHHHHHHHHH--HTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHhcc--ccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH--HH
Confidence 99999999999999 999999999999999999997 99999999999999998752 11 1 56666 88
Q ss_pred ccccceecc-cC--------------------CCc----eeeccccchhhhccccCe-eeeeeeeeeEecCCCHHH--HH
Q 037594 152 IAAGQIMDI-NS--------------------EGK----EVSLSELNFIHRHKTGKF-IEASIVSGVIIGGGNEEE--IE 203 (295)
Q Consensus 152 ~~~Gq~~dl-~~--------------------~~~----~~~~~~~~~i~~~KTa~L-f~~~~~~ga~lag~~~~~--~~ 203 (295)
++.||.+|+ .| .+. .+++++|..|+.+|||+| |.+||++|++++|++++. .+
T Consensus 190 ~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~ 269 (395)
T 2ihi_A 190 TIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYK 269 (395)
T ss_dssp HHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHH
T ss_pred HHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHH
Confidence 999999999 22 121 367899999999999999 999999999999998887 88
Q ss_pred HHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceee--------------------------------
Q 037594 204 RMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVG-------------------------------- 251 (295)
Q Consensus 204 ~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~-------------------------------- 251 (295)
.+++||.++|+||||+||++|++++++.+||.|+|+++||+|||++++
T Consensus 270 ~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~~ 349 (395)
T 2ihi_A 270 KIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYE 349 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999984
Q ss_pred ----ccCchhhHHHHHHHHHhhccccCC-CCCCchhhhhhhhhccC
Q 037594 252 ----IDGSKKHAKELIAEAKQELAYFDP-TRAAPLDHLVNFIVSFG 292 (295)
Q Consensus 252 ----le~a~~~~~~~~~~A~~~L~~l~~-~~~~~L~~l~~~~~~R~ 292 (295)
++++++.++++.++|++.|+.+|+ ..++.|..+++++.+|.
T Consensus 350 ~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 350 QYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 395 (395)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHC-----
T ss_pred HCChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhccC
Confidence 344566788999999999999976 45789999999999884
No 40
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=3.9e-59 Score=444.58 Aligned_cols=274 Identities=19% Similarity=0.205 Sum_probs=227.6
Q ss_pred hhhhhhhhHHhHHHHhhhcCCCC--ChHhHHHHhhhcCCCchhhhhhhhhhhhhhccc-------------hhhHHHHHH
Q 037594 16 VNEYKALKAKQINEALDEAVPLP--HPAILHEAMRYSLPGGKRLMSTLCIASCEMIGG-------------SQSVAMSMA 80 (295)
Q Consensus 16 ~~~~l~~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~~~GK~lRp~l~~~~~~~~g~-------------~~~~~~~~A 80 (295)
|..++....+.+.+.+.+..+.. .++++.++++|.+.||||+||+||+++++++|+ +.+.++++|
T Consensus 29 f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~~GGKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A 108 (390)
T 3dyh_A 29 FMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTCLGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDA 108 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhcCCccchhHHHHHHHHHHhCCccccccccccccCCHHHHHHHH
Confidence 44444444444444554444322 245899999999999999999999999999876 345667666
Q ss_pred H----HHHHHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhh--hhhhhhhh-c-c---c----ccc
Q 037594 81 C----AIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLA--MQHIAIIK-A-K---N----INS 145 (295)
Q Consensus 81 ~----avEliH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a--~~~l~~l~-~-~---~----l~~ 145 (295)
+ ||||||+|||||||| ||+|++|||+||||+.||+++||++||+++..+ |+++++.. . + . +++
T Consensus 109 ~~~g~avEliH~asLIHDDI--mD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~ 186 (390)
T 3dyh_A 109 CVCGWMIEFLQAHYLVEDDI--MDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNR 186 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHcCC--cCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 6 799999999999999 999999999999999999999999999999754 67777641 1 2 1 455
Q ss_pred ccccccccccceecccCC----------C-------ceeeccccchhhhccccCe-eeeeeeeeeEecCCCHHH-HHHHh
Q 037594 146 AVGSEGIAAGQIMDINSE----------G-------KEVSLSELNFIHRHKTGKF-IEASIVSGVIIGGGNEEE-IERMR 206 (295)
Q Consensus 146 ~~~~~~~~~Gq~~dl~~~----------~-------~~~~~~~~~~i~~~KTa~L-f~~~~~~ga~lag~~~~~-~~~l~ 206 (295)
++ ..++.||.+|+.+. . ..+++++|..|+++|||+| |++||++|++++|++++. .+.++
T Consensus 187 ~~--~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~ 264 (390)
T 3dyh_A 187 VD--YTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTE 264 (390)
T ss_dssp HH--HHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHH
T ss_pred HH--HHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 55 78899999999872 1 1268899999999999999 999999999999998775 78899
Q ss_pred hhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceee-----------------------------------
Q 037594 207 NFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVG----------------------------------- 251 (295)
Q Consensus 207 ~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~----------------------------------- 251 (295)
+||.++|+||||+||++|++++++.+||.|+|+++||+|||++++
T Consensus 265 ~~g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g 344 (390)
T 3dyh_A 265 ELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEAD 344 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhcCChHHhCCCcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999984
Q ss_pred -ccCchhhHHHHHHHHHhhccccCCCC---CCchhhhhhhhhccCC
Q 037594 252 -IDGSKKHAKELIAEAKQELAYFDPTR---AAPLDHLVNFIVSFGN 293 (295)
Q Consensus 252 -le~a~~~~~~~~~~A~~~L~~l~~~~---~~~L~~l~~~~~~R~~ 293 (295)
++++++.++++.++|++.|+.+|... ++.|..|++++.+|.|
T Consensus 345 ~~~~~~~~~~~~~~~a~~~i~~l~~~~~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 345 LQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHcCCC
Confidence 34456677888999999999996533 5789999999999986
No 41
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=2.4e-58 Score=436.63 Aligned_cols=271 Identities=15% Similarity=0.187 Sum_probs=216.6
Q ss_pred cchhhhhhhhHHhHHHHhhhcCCCC-----ChHhHHHHhhhcCCCchhhhhhhhhhhhhhccc----hhhHHHHHHHHHH
Q 037594 14 FQVNEYKALKAKQINEALDEAVPLP-----HPAILHEAMRYSLPGGKRLMSTLCIASCEMIGG----SQSVAMSMACAIE 84 (295)
Q Consensus 14 ~~~~~~l~~~~~~i~~~l~~~~~~~-----~~~~l~~~~~~~~~~GK~lRp~l~~~~~~~~g~----~~~~~~~~A~avE 84 (295)
.+|..|+.+....|++.+++..-.. -.+++.++++|.+.||||+||+|++++++++|+ ..+.++.+|||||
T Consensus 26 ~df~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~Y~~~GGKrlRp~l~~~~~~~~~~~~~~~~e~~~~la~aiE 105 (368)
T 2q58_A 26 TDFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCIDYNVKKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVE 105 (368)
T ss_dssp TTGGGTHHHHHHHHHTTCCCCCSSCSTTCCHHHHHHHHHHHHTTCSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHhCCCccCCHHHHHHHHHHHH
Confidence 4455566666666666665532111 124678899999999999999999999999976 3478899999999
Q ss_pred HHHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhcc-----------cccccccccccc
Q 037594 85 LLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAK-----------NINSAVGSEGIA 153 (295)
Q Consensus 85 liH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~-----------~l~~~~~~~~~~ 153 (295)
|||+|||||||| ||+|++|||+||+|++||+++|||+||+|++.||+++.++... .+++++ ..++
T Consensus 106 liH~asLiHDDi--mD~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 181 (368)
T 2q58_A 106 AIQALILIADDI--MDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESI--FFTV 181 (368)
T ss_dssp HHHHHHHHHHHH--HTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHhhc--ccCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHH--HHhh
Confidence 999999999999 9999999999999999999999999999999999999875331 145555 7889
Q ss_pred ccceecccCCCce---eeccccchhhhccccCe-eeeeeeeeeEecC--CCHHHHHHHhhhhhhhHHHHHHHhhhhHhcC
Q 037594 154 AGQIMDINSEGKE---VSLSELNFIHRHKTGKF-IEASIVSGVIIGG--GNEEEIERMRNFGKYVGMAYQLWNDIVDVIG 227 (295)
Q Consensus 154 ~Gq~~dl~~~~~~---~~~~~~~~i~~~KTa~L-f~~~~~~ga~lag--~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~ 227 (295)
.||.+|+.+.... .++++|..|+.+|||+| |.+|+.+|++++| ++++..+.+++||.++|+||||+||++|+++
T Consensus 182 ~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~ 261 (368)
T 2q58_A 182 LGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF 261 (368)
T ss_dssp HHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999876432 56789999999999998 8999999999988 4667778899999999999999999999975
Q ss_pred Chhhhhh-hhhhhhccccCCCceeeccCchh--------------------------------hHHHHHHHHHhhccccC
Q 037594 228 SPEMREK-TGRDMMRDKATYPKLVGIDGSKK--------------------------------HAKELIAEAKQELAYFD 274 (295)
Q Consensus 228 ~~~~~GK-~~~Dl~~gk~T~p~~~~le~a~~--------------------------------~~~~~~~~A~~~L~~l~ 274 (295)
|| .|+||++||+|||++++++.+.+ .++++.+++.+.++.+|
T Consensus 262 -----gK~~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~ 336 (368)
T 2q58_A 262 -----NDSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDIT 336 (368)
T ss_dssp -----CCCSSCTTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred -----CCCCCchHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 78 99999999999999998876622 23445556666666665
Q ss_pred CCC-----CCchhhhhhhhhccCC
Q 037594 275 PTR-----AAPLDHLVNFIVSFGN 293 (295)
Q Consensus 275 ~~~-----~~~L~~l~~~~~~R~~ 293 (295)
... ...|..|++|+++|+.
T Consensus 337 ~~~~k~~l~~ll~kI~~~~~~rks 360 (368)
T 2q58_A 337 DDSLQKVFIHLIHQISELITNSRS 360 (368)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC---
T ss_pred chhHHHHHHHHHHHHHHHHHHhhc
Confidence 421 2356678888888865
No 42
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=2.4e-58 Score=434.98 Aligned_cols=270 Identities=15% Similarity=0.191 Sum_probs=226.7
Q ss_pred chhhhhhhhHHhHHHHhhhcCCCCCh-----HhHHHHhhhcCCCchhhhhhhhhhhhhhccc----hhhHHHHHHHHHHH
Q 037594 15 QVNEYKALKAKQINEALDEAVPLPHP-----AILHEAMRYSLPGGKRLMSTLCIASCEMIGG----SQSVAMSMACAIEL 85 (295)
Q Consensus 15 ~~~~~l~~~~~~i~~~l~~~~~~~~~-----~~l~~~~~~~~~~GK~lRp~l~~~~~~~~g~----~~~~~~~~A~avEl 85 (295)
+|...+.+..+.|.+.+...-....| +.+.++++|.+.||||+||.||+++++++|+ +.+.+.++|++|||
T Consensus 27 ~f~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~y~~~GGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~A~avEl 106 (368)
T 2her_A 27 DFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCIDYNVKKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEA 106 (368)
T ss_dssp TGGGTHHHHHHHHHTTCCCCTTSCCTTTTHHHHHHHHHHHHTTSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHhhCCCCccchHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Confidence 45555566666666666553222233 5667788887799999999999999999986 34789999999999
Q ss_pred HHHHHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHh---Hhhhhhhhhh-hc-c------ccccccccccccc
Q 037594 86 LVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALH---CLAMQHIAII-KA-K------NINSAVGSEGIAA 154 (295)
Q Consensus 86 iH~asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~---~~a~~~l~~l-~~-~------~l~~~~~~~~~~~ 154 (295)
||+|||||||| ||+|++|||+||||++||+.+|||+||+|+ +.+|+++++. .. + .+++++ ..++.
T Consensus 107 lH~asLIHDDI--mD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~ 182 (368)
T 2her_A 107 IQALILIADDI--MDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESI--FFTVL 182 (368)
T ss_dssp HHHHHHHHHHH--HTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHccc--ccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHH--HHHHH
Confidence 99999999999 999999999999999999999999999999 8999998874 21 1 156666 89999
Q ss_pred cceecccCCCc--eeec-cccchhhhccccCe-eeeeeeeeeEecCCCHHH--HHHHhhhhhhhHHHHHHHhhhhHhcCC
Q 037594 155 GQIMDINSEGK--EVSL-SELNFIHRHKTGKF-IEASIVSGVIIGGGNEEE--IERMRNFGKYVGMAYQLWNDIVDVIGS 228 (295)
Q Consensus 155 Gq~~dl~~~~~--~~~~-~~~~~i~~~KTa~L-f~~~~~~ga~lag~~~~~--~~~l~~~g~~lG~afQi~DD~lD~~~~ 228 (295)
||.+|+.+... ..+. ++|..|+++|||+| |++||++|++++|++++. .+.+++||.++|+||||+||++|++
T Consensus 183 GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~-- 260 (368)
T 2her_A 183 GQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL-- 260 (368)
T ss_dssp HHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999988752 2333 89999999999999 999999999999998887 8899999999999999999999999
Q ss_pred hhhhhhhhhhhhccccCCCceeeccCc--------------------------------hhhHHHHHHHHHhhccccCC-
Q 037594 229 PEMREKTGRDMMRDKATYPKLVGIDGS--------------------------------KKHAKELIAEAKQELAYFDP- 275 (295)
Q Consensus 229 ~~~~GK~~~Dl~~gk~T~p~~~~le~a--------------------------------~~~~~~~~~~A~~~L~~l~~- 275 (295)
.+||.|+||++||+|||++++++.+ ++.++++.++|++.|+.+|.
T Consensus 261 --~~GK~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~ 338 (368)
T 2her_A 261 --FNDSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDD 338 (368)
T ss_dssp --SCCSSSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCH
T ss_pred --hcCCCCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 7799999999999999999976643 44567888999999999976
Q ss_pred CCCCchhhhhhhhhccC
Q 037594 276 TRAAPLDHLVNFIVSFG 292 (295)
Q Consensus 276 ~~~~~L~~l~~~~~~R~ 292 (295)
+.++.|..+++++.++.
T Consensus 339 ~~k~~L~~l~~~i~~~~ 355 (368)
T 2her_A 339 SLQKVFIHLIHQISELI 355 (368)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35688999999997763
No 43
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=5.6e-56 Score=404.81 Aligned_cols=242 Identities=26% Similarity=0.384 Sum_probs=214.8
Q ss_pred hhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcC
Q 037594 17 NEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDD 95 (295)
Q Consensus 17 ~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDD 95 (295)
.+|+++..+.|++.|.+.++...|..+.++++|++ .||||+||.||+++++++|++.+.+.++|++|||||+|||||||
T Consensus 2 ~~~~~~~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDD 81 (274)
T 3kra_B 2 QPYWAAIEADIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEH 81 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46888889999999999998877777999999999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhcc-------c-------cccccccccccccceeccc
Q 037594 96 LPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAK-------N-------INSAVGSEGIAAGQIMDIN 161 (295)
Q Consensus 96 I~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~-------~-------l~~~~~~~~~~~Gq~~dl~ 161 (295)
|||+|++ +|||+||+|++||+++|||+||+|++.||+.+++...+ . +++++|..+++.||.+|+.
T Consensus 82 I~~dD~d-~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~ 160 (274)
T 3kra_B 82 LPLTDGS-RPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEE 160 (274)
T ss_dssp CCCSSSS-SCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTT
T ss_pred CcccCCc-cCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Confidence 9655665 69999999999999999999999999999999986432 1 3444455678999999999
Q ss_pred CCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhc
Q 037594 162 SEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMR 241 (295)
Q Consensus 162 ~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~ 241 (295)
+....+++++|.+|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||. +.
T Consensus 161 ~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~--~~--------------- 223 (274)
T 3kra_B 161 IVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK--NS--------------- 223 (274)
T ss_dssp CCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT--TT---------------
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh--cc---------------
Confidence 8865578899999999999999999999999999999999999999999999999999997 11
Q ss_pred cccCCCceeeccCchhhHHHHHHHHHhhccccCCCCCCchhhhh
Q 037594 242 DKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLV 285 (295)
Q Consensus 242 gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~ 285 (295)
+.+++.+.++++.++|++.|+.|+.++.++|.+++
T Consensus 224 ---------~~~~~~~~~~~~~~~A~~~L~~~~~~~~~pl~~~~ 258 (274)
T 3kra_B 224 ---------HQLIDENIIGKLKELALEELGGFHGKNAELMSSLV 258 (274)
T ss_dssp ---------SCCCCHHHHHHHHHHHHHHHTTSCSSHHHHTGGGG
T ss_pred ---------ccHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHH
Confidence 22678899999999999999999876555665554
No 44
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=8.6e-56 Score=403.96 Aligned_cols=217 Identities=23% Similarity=0.341 Sum_probs=189.4
Q ss_pred ccchhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccc---hhhHHHHHHHHHHHHHH
Q 037594 13 FFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGG---SQSVAMSMACAIELLVT 88 (295)
Q Consensus 13 ~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~---~~~~~~~~A~avEliH~ 88 (295)
|..+...++++++.|++.|.+.++...|+.+.++++|.+ .||||+||.|++++++++|+ +.+.+.++|+++||||+
T Consensus 3 ~~~l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~Lvll~~~~~g~~~~~~~~~~~~A~aiEliH~ 82 (285)
T 4fp4_A 3 MYSLPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELLHV 82 (285)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHH
Confidence 456788899999999999999998754668999999999 99999999999999999998 78899999999999999
Q ss_pred HHHhhcCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhcc---ccccccccccccccceecccCCCc
Q 037594 89 MAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAK---NINSAVGSEGIAAGQIMDINSEGK 165 (295)
Q Consensus 89 asLIhDDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~---~l~~~~~~~~~~~Gq~~dl~~~~~ 165 (295)
|||||||| ||+|++|||+||+|++||+++|||+||+|++.|++.++++++. .+++++ ..++.||.+|+.+...
T Consensus 83 aSLIHDDI--mD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~ls~~~--~~~~~GQ~lDl~~~~~ 158 (285)
T 4fp4_A 83 VSLLQDDV--MDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGADVVTYLADVA--QRLSVGQALDLEGERD 158 (285)
T ss_dssp HHHHHHHH--HTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHHHHHHTTCHH
T ss_pred HHHHHCCC--CCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHhHHHHHhcccc
Confidence 99999999 9999999999999999999999999999999999999986542 166777 7899999999988653
Q ss_pred eeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhcc
Q 037594 166 EVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRD 242 (295)
Q Consensus 166 ~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~g 242 (295)
. |+++|||+||++||++|++++|++ +..+.+++||.++|+||||+||++|++++++..||.++||+++
T Consensus 159 ~--------~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~~~k~~g~DI~e~ 226 (285)
T 4fp4_A 159 K--------AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERPETKSIANEIGRY 226 (285)
T ss_dssp H--------HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CHHHHHHHHHHHHH
T ss_pred c--------hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCccHHHHHHH
Confidence 1 889999999999999999999999 8889999999999999999999999999877544499999988
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=1.6e-53 Score=388.55 Aligned_cols=241 Identities=25% Similarity=0.422 Sum_probs=211.2
Q ss_pred chhhhhhhhHHhHHHHhhhcCCCCChHhHHHHhhhcC-CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhh
Q 037594 15 QVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQ 93 (295)
Q Consensus 15 ~~~~~l~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIh 93 (295)
.+.+|++...+.|++.|.+.++...|..+.++++|++ .||||+||.||+++++++|++.+.++++|++|||||+|||||
T Consensus 5 ~~~~~~~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIH 84 (273)
T 3qkc_B 5 RTQTYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAYTH 84 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCSSTTHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998766767999999999 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccccCCCCCCcccchhhHHHhHhHHhHhhhhhhhhhhcc------c-------cccccccccccccceecc
Q 037594 94 DDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAK------N-------INSAVGSEGIAAGQIMDI 160 (295)
Q Consensus 94 DDI~~~D~~~~RRG~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~l~~~------~-------l~~~~~~~~~~~Gq~~dl 160 (295)
||| +|+|+ |||+||+|++||+++|||+||+|++.||+++++...+ . +++++|..+++.||.+|+
T Consensus 85 DDI--~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl 161 (273)
T 3qkc_B 85 ENL--PLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHEL 161 (273)
T ss_dssp HSC--CBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred cCc--ccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 999 67777 9999999999999999999999999999999986431 1 333444468899999999
Q ss_pred cCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhh
Q 037594 161 NSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMM 240 (295)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~ 240 (295)
.+.. ..+.+++..|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||+.+ ++
T Consensus 162 ~~~~-~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~---~~----------- 226 (273)
T 3qkc_B 162 GLNQ-LNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRS---GF----------- 226 (273)
T ss_dssp TCCS-SCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCS---TT-----------
T ss_pred hcCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh---ch-----------
Confidence 9843 35556666678999999999999999999999999999999999999999999999973 11
Q ss_pred ccccCCCceeeccCchhhHHHHHHHHHhhccccCCCCCCchhhhhhhh
Q 037594 241 RDKATYPKLVGIDGSKKHAKELIAEAKQELAYFDPTRAAPLDHLVNFI 288 (295)
Q Consensus 241 ~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~ 288 (295)
.+.++++.++|++.|..|+.+....|.++++|-
T Consensus 227 ---------------~~~~~~~~~~a~~~l~~~~~~~~~~l~~~~~~~ 259 (273)
T 3qkc_B 227 ---------------EGRIKELKELAVKELESFGGEKIELIRGVFELE 259 (273)
T ss_dssp ---------------HHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTC-
T ss_pred ---------------HHHHHHHHHHHHHHHHccCchhhhHHHHHHHHH
Confidence 268999999999999999876667788887765
No 46
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=69.52 E-value=3.4 Score=36.77 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=69.5
Q ss_pred ccccccceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCCh
Q 037594 150 EGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSP 229 (295)
Q Consensus 150 ~~~~~Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~ 229 (295)
..++.|...|+....- .|.+++..-+++=.|....+.+.+- +..+. ......+.++|.|+|+.|=+.|+
T Consensus 111 ~~li~g~~~Dl~~~~~-~t~~dL~~Yc~~vAg~VG~l~~~l~---g~~~~---~~~~~~A~~lG~AlQltNilRDv---- 179 (293)
T 3acx_A 111 YNLIDTVYKDQHFTMF-ETDAELFGYCYGVAGTVGEVLTPIL---SDHET---HQTYDVARRLGESLQLINILRDV---- 179 (293)
T ss_dssp HHHHHHHHHHTTCCCC-SSHHHHHHHHHHHTHHHHHHHHHHH---CSSCC---HHHHHHHHHHHHHHHHHHHHHCH----
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHhhHHHHHHHHHHh---CCCCc---HHHHHHHHHHHHHHHHHHHHHHH----
Confidence 5667788888864321 4666666555554555555544432 12221 23567999999999999866665
Q ss_pred hhhhhhhhhhhccccCCCcee----e------------------ccCchhhHHHHHHHHHhhccccCCCC
Q 037594 230 EMREKTGRDMMRDKATYPKLV----G------------------IDGSKKHAKELIAEAKQELAYFDPTR 277 (295)
Q Consensus 230 ~~~GK~~~Dl~~gk~T~p~~~----~------------------le~a~~~~~~~~~~A~~~L~~l~~~~ 277 (295)
+.|...|++-+|.=. + +..-...++.+..+|...+..+|+..
T Consensus 180 ------~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~ 243 (293)
T 3acx_A 180 ------GEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEA 243 (293)
T ss_dssp ------HHHHHTTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTH
T ss_pred ------HHHHhCCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHH
Confidence 567777888888521 1 12223456777778888887777643
No 47
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=68.73 E-value=3.5 Score=37.48 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=58.7
Q ss_pred CCchhhhhhhhhhhhhhcc-chhhHHHHHHHHHHHHHHHHHhhcCCCCCC------------ccccccCCCCCCcccchh
Q 037594 52 PGGKRLMSTLCIASCEMIG-GSQSVAMSMACAIELLVTMAVIQDDLPCLD------------NDDLRRGKPSNHKVFGEA 118 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g-~~~~~~~~~A~avEliH~asLIhDDI~~~D------------~~~~RRG~pt~h~~~G~~ 118 (295)
..|..++.. |.+++.+.| .+++....+..--+.+=.|+-|.||| +| +++.|.||+|+-..+|..
T Consensus 180 KTg~L~~~a-~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDi--LD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle 256 (317)
T 4f62_A 180 KTGALIKAS-VRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDI--IDLTSDTETLGKTQFSDAEANKATYPKLLGLD 256 (317)
T ss_dssp HTHHHHHHH-HHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTC----------------CCCCHHHHHHHH
T ss_pred chHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCChHhhCCCcchHHhcCCCcHHHHHHHH
Confidence 456666543 233333444 45555566677777788899999999 66 467889999999999999
Q ss_pred hHHHhHhHHhHhhhhhhhhhhc
Q 037594 119 TAILACQALHCLAMQHIAIIKA 140 (295)
Q Consensus 119 ~Ail~gd~L~~~a~~~l~~l~~ 140 (295)
.|--...-+...|.+.|..++.
T Consensus 257 ~a~~~a~~~~~~A~~~L~~l~~ 278 (317)
T 4f62_A 257 GAKALVVRLHEQAIAQISEFGD 278 (317)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCch
Confidence 8888888888899888888653
No 48
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=67.73 E-value=3.8 Score=36.60 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=65.9
Q ss_pred ccccccceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCCh
Q 037594 150 EGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSP 229 (295)
Q Consensus 150 ~~~~~Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~ 229 (295)
..++.|...|+....- .|.+++..-+.+=.|+...+.+.+ ++..+++ ...++.++|+|+|+.|=+.|+
T Consensus 107 ~~li~g~~~Dl~~~~~-~t~~dL~~Y~~~vAg~VG~m~~~i---~g~~~~~----~~~~A~~lG~AlQltNilRDv---- 174 (294)
T 4hd1_A 107 LRLIEANRRDQRKHTY-DTWEDLRDYCRYSADPVGRLVLGI---FGCLDDE----RARLSDATCTALQVANHMQDI---- 174 (294)
T ss_dssp HHHHHHHHHHHHCSBC-CSHHHHHHHHHHHTHHHHHHHHHH---TTCCSHH----HHHHHHHHHHHHHHHHHHHTH----
T ss_pred HHHHHHHHhccccCCC-CCHHHHHHHHHhccchHHHHHHHH---hCCCCHH----HHHHHHHHHHHHHHHHHHHhc----
Confidence 5677888888865422 455555554444444444444432 2233433 346788999999999877776
Q ss_pred hhhhhhhhhhhccccCCCcee----------------------eccCchhhHHHHHHHHHhhccccCCC
Q 037594 230 EMREKTGRDMMRDKATYPKLV----------------------GIDGSKKHAKELIAEAKQELAYFDPT 276 (295)
Q Consensus 230 ~~~GK~~~Dl~~gk~T~p~~~----------------------~le~a~~~~~~~~~~A~~~L~~l~~~ 276 (295)
+.|+..|++-+|.-. .++.--..++.+.++|...+..+|+.
T Consensus 175 ------~eD~~~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~ 237 (294)
T 4hd1_A 175 ------DRDLALGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPR 237 (294)
T ss_dssp ------HHHHHTTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHH
T ss_pred ------hhhhccCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 456666777777421 12222334667777788777777754
No 49
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=63.55 E-value=5.4 Score=36.13 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=58.4
Q ss_pred CCchhhhhhhhhhhhhhcc--chhhHHHHHHHHHHHHHHHHHhhcCCCCCC------------ccccccCCCCCCcccch
Q 037594 52 PGGKRLMSTLCIASCEMIG--GSQSVAMSMACAIELLVTMAVIQDDLPCLD------------NDDLRRGKPSNHKVFGE 117 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g--~~~~~~~~~A~avEliH~asLIhDDI~~~D------------~~~~RRG~pt~h~~~G~ 117 (295)
..|..++-.+.+ +.+.| .+++....+...-+.+=.|+-|.||+ +| +++.|.||+|+-..+|.
T Consensus 188 KTg~L~~~a~~~--a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDi--lD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l 263 (313)
T 3lom_A 188 KTGKLILACFEM--VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDY--LDLYAPTQILGKGRSSDQANQKTTFATLFNK 263 (313)
T ss_dssp HTHHHHHHHHHH--HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCC---------------CCCHHHHSCH
T ss_pred CcHHHHHHHHHH--HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHhhCCCCcchhhcCCccHHHHHHH
Confidence 456666655444 33445 45665566677777788889999999 66 45778999999999999
Q ss_pred hhHHHhHhHHhHhhhhhhhhhhc
Q 037594 118 ATAILACQALHCLAMQHIAIIKA 140 (295)
Q Consensus 118 ~~Ail~gd~L~~~a~~~l~~l~~ 140 (295)
..|--...-+...|.+.|..++.
T Consensus 264 ~~a~~~a~~~~~~A~~~L~~l~~ 286 (313)
T 3lom_A 264 QQLEEEIAVHYQIAMDSLRLFGS 286 (313)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc
Confidence 98888888888899888887654
No 50
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=63.45 E-value=3.9 Score=36.87 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=57.1
Q ss_pred CCchhhhhhhhhhhhhhccc-hhhHHHHHHHHHHHHHHHHHhhcCCCCCC------------ccccccCCCCCCcccchh
Q 037594 52 PGGKRLMSTLCIASCEMIGG-SQSVAMSMACAIELLVTMAVIQDDLPCLD------------NDDLRRGKPSNHKVFGEA 118 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g~-~~~~~~~~A~avEliH~asLIhDDI~~~D------------~~~~RRG~pt~h~~~G~~ 118 (295)
..|..++-. |.+++.+.|. +++....+...-+.+=.|+-|.||+ +| +++.|.||+|+-..+|..
T Consensus 181 KTg~L~~~~-~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDi--lD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~ 257 (304)
T 3lsn_A 181 KTGALIEAS-VILGALASGRAEKGELKALQTYAQAIGLAFQVQDDI--LDVESDTATLGKRQGADIARDKPTYPALLGLA 257 (304)
T ss_dssp HTHHHHHHH-HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC------------CCHHHHHCHH
T ss_pred hhHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCChHHhCCCcccHHhcCCccHHHHHHHH
Confidence 445556533 3333444455 5555556677777788899999999 77 567899999999999999
Q ss_pred hHHHhHhHHhHhhhhhhhhhhc
Q 037594 119 TAILACQALHCLAMQHIAIIKA 140 (295)
Q Consensus 119 ~Ail~gd~L~~~a~~~l~~l~~ 140 (295)
.|--...-+...|.+.|..++.
T Consensus 258 ~a~~~a~~~~~~A~~~L~~l~~ 279 (304)
T 3lsn_A 258 AAKEYALELRDQALHALRPFDA 279 (304)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHhCch
Confidence 8888888888899888887653
No 51
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=62.39 E-value=4.6 Score=36.77 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=57.3
Q ss_pred CCchhhhhhhhhhhhhhcc-chhhHHHHHHHHHHHHHHHHHhhcCCCCCC------------ccccccCCCCCCcccchh
Q 037594 52 PGGKRLMSTLCIASCEMIG-GSQSVAMSMACAIELLVTMAVIQDDLPCLD------------NDDLRRGKPSNHKVFGEA 118 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g-~~~~~~~~~A~avEliH~asLIhDDI~~~D------------~~~~RRG~pt~h~~~G~~ 118 (295)
..|..++.. |.+++.+.| .+++....+..--+.+=.|+-|.||| +| +++.+.||+|+-..+|..
T Consensus 187 KTg~L~~~a-~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDi--LD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle 263 (324)
T 3ts7_A 187 KTGALIRAS-VRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDI--LDEESDTQTLGKTRGKDRDHNKPNYPALLGLS 263 (324)
T ss_dssp HTHHHHHHH-HHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHTCC---------------CCCHHHHHCHH
T ss_pred hHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCCccchhhcCCccHHHHHHHH
Confidence 456666533 333344445 46665556667777788899999999 66 357789999999999998
Q ss_pred hHHHhHhHHhHhhhhhhhhhhc
Q 037594 119 TAILACQALHCLAMQHIAIIKA 140 (295)
Q Consensus 119 ~Ail~gd~L~~~a~~~l~~l~~ 140 (295)
.|--...-+...|.+.|..++.
T Consensus 264 ~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 264 GAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 8888888888888888887653
No 52
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=59.77 E-value=5.6 Score=36.34 Aligned_cols=85 Identities=26% Similarity=0.141 Sum_probs=54.4
Q ss_pred CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCC------------ccccccCCCCCCcccchhh
Q 037594 52 PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLD------------NDDLRRGKPSNHKVFGEAT 119 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D------------~~~~RRG~pt~h~~~G~~~ 119 (295)
..|..++..+. +++.+.|.+++....+..--+.+=.|+-|.||| +| +++.+.||+|+-..+|...
T Consensus 221 KTa~L~~~a~~-~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDi--LD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~ 297 (335)
T 2h8o_A 221 KTGALLRFACE-AGAIIAGSNQAERQRLRLFGEKIGLSFQLADDL--LDLTADAATMGKATGKDAARGKGTLVALRGEAW 297 (335)
T ss_dssp HTHHHHHHHHH-HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHC-----------------CCCHHHHHCHHH
T ss_pred chHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHhCCCcchHHhcCCccHHHHHHHHH
Confidence 34555554332 233344556666666677777788889999999 66 3567888889888888877
Q ss_pred HHHhHhHHhHhhhhhhhhhh
Q 037594 120 AILACQALHCLAMQHIAIIK 139 (295)
Q Consensus 120 Ail~gd~L~~~a~~~l~~l~ 139 (295)
|--..+-+...|.+.|..++
T Consensus 298 a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 298 AREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 77777777888888777764
No 53
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=59.19 E-value=4.8 Score=36.65 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=53.5
Q ss_pred CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCC------------ccccccCCCCCCcccchhh
Q 037594 52 PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLD------------NDDLRRGKPSNHKVFGEAT 119 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D------------~~~~RRG~pt~h~~~G~~~ 119 (295)
..|..++..+ .+++.+.|.+++....+..--+.+=.|+-|.||+ +| +++.|.||+|+-..+|...
T Consensus 210 KTa~L~~~a~-~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDi--LD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~ 286 (324)
T 3uca_A 210 KTGELIKASI-MSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDI--LDVVGNAKDLGKNVHKDQESNKNNYITIFGLEE 286 (324)
T ss_dssp HTHHHHHHHH-HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCC-----------------CHHHHHCHHH
T ss_pred chHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCCcchHhhcCCccHHHHHHHHH
Confidence 3455554332 2333344556665666667777788899999999 65 3567888999988899888
Q ss_pred HHHhHhHHhHhhhhhhhhhh
Q 037594 120 AILACQALHCLAMQHIAIIK 139 (295)
Q Consensus 120 Ail~gd~L~~~a~~~l~~l~ 139 (295)
|--...-+...|.+.|..++
T Consensus 287 a~~~a~~~~~~A~~~L~~l~ 306 (324)
T 3uca_A 287 CKKKCVNITEECIEILSSIK 306 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 88777888888888887764
No 54
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=58.73 E-value=4.8 Score=36.18 Aligned_cols=85 Identities=20% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCC------------ccccccCCCCCCcccchhh
Q 037594 52 PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLD------------NDDLRRGKPSNHKVFGEAT 119 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D------------~~~~RRG~pt~h~~~G~~~ 119 (295)
..|..++..+ .+++.+.|.+++....+...-+.+=.|+-|.||+ +| +++.+.||+|+-..+|...
T Consensus 177 KTa~L~~~~~-~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDi--lD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~ 253 (301)
T 1rtr_A 177 KTGALLTFAV-MSAADIANVDDTTKEHLESYSYHLGMMFQIKDDL--LDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDG 253 (301)
T ss_dssp HTHHHHHHHH-HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCC-------------CCHHHHHHHHH
T ss_pred chHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHH
Confidence 3455555432 2233344556666666666777778889999999 77 5678889999888888887
Q ss_pred HHHhHhHHhHhhhhhhhhhh
Q 037594 120 AILACQALHCLAMQHIAIIK 139 (295)
Q Consensus 120 Ail~gd~L~~~a~~~l~~l~ 139 (295)
|--...-+...|.+.|..++
T Consensus 254 a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 254 AEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 77777777888888887764
No 55
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=58.64 E-value=10 Score=33.90 Aligned_cols=83 Identities=20% Similarity=0.160 Sum_probs=52.2
Q ss_pred CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCC------------ccccccCCCCCCcccchhh
Q 037594 52 PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLD------------NDDLRRGKPSNHKVFGEAT 119 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D------------~~~~RRG~pt~h~~~G~~~ 119 (295)
..|..++..+ .+++.+.|.+++ .+..--+.|=.|+-|.||+ +| +++.|.||+|+-..+|...
T Consensus 178 KTg~L~~~~~-~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDi--lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~ 251 (297)
T 3m0g_A 178 KTGALISFAA-QAGAILAGADRG---PLTAYATALGLAFQIADDI--LDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAG 251 (297)
T ss_dssp HTHHHHHHHH-HHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTC--C---------------------CCHHHHHCSSH
T ss_pred chHHHHHHHH-HHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCCccchhhcCCccHHHHHHHHH
Confidence 4555555432 233333444444 4555556677788999999 66 3577889999999999998
Q ss_pred HHHhHhHHhHhhhhhhhhhhc
Q 037594 120 AILACQALHCLAMQHIAIIKA 140 (295)
Q Consensus 120 Ail~gd~L~~~a~~~l~~l~~ 140 (295)
|--...-++..|.+.|..++.
T Consensus 252 a~~~~~~~~~~A~~~L~~~~~ 272 (297)
T 3m0g_A 252 AKSRAADLVAEAEAALAPYGE 272 (297)
T ss_dssp HHHHHHHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 888888888899888888754
No 56
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=57.94 E-value=4.5 Score=36.43 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=54.4
Q ss_pred CCchhhhhhhhhhhhhhcc-chhhHHHHHHHHHHHHHHHHHhhcCCCCCC------------ccccccCCCCCCcccchh
Q 037594 52 PGGKRLMSTLCIASCEMIG-GSQSVAMSMACAIELLVTMAVIQDDLPCLD------------NDDLRRGKPSNHKVFGEA 118 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g-~~~~~~~~~A~avEliH~asLIhDDI~~~D------------~~~~RRG~pt~h~~~G~~ 118 (295)
..|..++-.+ .+++.+.| .+++....+...-+.+=.|+-|.||+ +| +++.+.||+|+-..+|..
T Consensus 187 KTa~L~~~~~-~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDi--lD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~ 263 (302)
T 3p8r_A 187 KTGALMRCAI-RLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDI--LDIISDTETLGKPQGSDQELNKSTYPALLGLE 263 (302)
T ss_dssp HTHHHHHHHH-HHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHH--HHHTTC---------------CCCHHHHHHHH
T ss_pred CcHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCCcchHHhcCCchHHHHHHHH
Confidence 3455554332 22333334 34555555666677777888999999 66 356788999999889988
Q ss_pred hHHHhHhHHhHhhhhhhhhhhc
Q 037594 119 TAILACQALHCLAMQHIAIIKA 140 (295)
Q Consensus 119 ~Ail~gd~L~~~a~~~l~~l~~ 140 (295)
.|--...-+...|.+.|..++.
T Consensus 264 ~a~~~a~~~~~~A~~~L~~l~~ 285 (302)
T 3p8r_A 264 GAQQKAHTLLQEALLALEAIPY 285 (302)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 8888888888888888887643
No 57
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=57.53 E-value=5.8 Score=35.71 Aligned_cols=85 Identities=22% Similarity=0.123 Sum_probs=55.2
Q ss_pred CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCC------------ccccccCCCCCCcccchhh
Q 037594 52 PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLD------------NDDLRRGKPSNHKVFGEAT 119 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D------------~~~~RRG~pt~h~~~G~~~ 119 (295)
..|..++-.+ .+++.+.|.+++....+...-+.+=.|+-|.||+ +| +++.+.||+|+-..+|...
T Consensus 185 KTg~L~~~~~-~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDi--lD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~ 261 (302)
T 3p8l_A 185 KTGALIEFAL-IAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDL--LDATSTEADLGKKVGRDEALNKSTYPALLGIAG 261 (302)
T ss_dssp HTHHHHHHHH-HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTTC-----------------CCHHHHHCHHH
T ss_pred CcHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCChhhHHhcCCCcHHHHHHHHH
Confidence 3455554432 2333344556666666677777788899999999 66 3567889999998999988
Q ss_pred HHHhHhHHhHhhhhhhhhhh
Q 037594 120 AILACQALHCLAMQHIAIIK 139 (295)
Q Consensus 120 Ail~gd~L~~~a~~~l~~l~ 139 (295)
|--...-+...|.+.|..++
T Consensus 262 a~~~~~~~~~~A~~~L~~~~ 281 (302)
T 3p8l_A 262 AKDALTHQLAEGSAVLEKIK 281 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 88777888888888888873
No 58
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=52.95 E-value=5.6 Score=36.42 Aligned_cols=86 Identities=13% Similarity=-0.013 Sum_probs=51.5
Q ss_pred ccccccceecccCCCceeeccccchhhhccccCeeeeeeeeeeEecCCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCCh
Q 037594 150 EGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSP 229 (295)
Q Consensus 150 ~~~~~Gq~~dl~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~ 229 (295)
..|..|-..|+.... .|.+++..-+.+=.|....+.+.+-.. .+...+........+.++|.|+|+.|=+.|+
T Consensus 121 ~~m~~gm~~dl~~~~--~t~~~L~~Yc~~vAg~VG~l~~~l~~~-~~~~~~~~~~~~~~A~~lG~AlQltNilRDv---- 193 (343)
T 3vj8_A 121 RRMGIGMAEFLDKHV--TSEQEWDKYCHYVAGLVGIGLSRLFSA-SEFEDPLVGEDTERANSMGLFLQKTNIIRDY---- 193 (343)
T ss_dssp HHHHHHHHHGGGCCC--CSHHHHHHHHHHHTHHHHHHHHHHHHH-HTSSCHHHHHCHHHHHHHHHHHHHHHHHHTH----
T ss_pred HHHHHHHHHhccCCC--CCHHHHHHHHHhCcHHHHHHHHHHhCC-CCCccchhhhHHHHHHHHHHHHHHHHHHHHh----
Confidence 345556656664221 466666655555555555555444221 1111122334667899999999999977776
Q ss_pred hhhhhhhhhhhccccCCCc
Q 037594 230 EMREKTGRDMMRDKATYPK 248 (295)
Q Consensus 230 ~~~GK~~~Dl~~gk~T~p~ 248 (295)
+.|+..|++-||.
T Consensus 194 ------~eD~~~gR~YlP~ 206 (343)
T 3vj8_A 194 ------LEDQQGGREFWPQ 206 (343)
T ss_dssp ------HHHHHTTCCCSCH
T ss_pred ------HHHHhCCCeeCCH
Confidence 5666777777775
No 59
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=50.09 E-value=9.5 Score=34.42 Aligned_cols=83 Identities=16% Similarity=0.007 Sum_probs=58.2
Q ss_pred CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCC------------ccccccCCCCCCcccchhh
Q 037594 52 PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLD------------NDDLRRGKPSNHKVFGEAT 119 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D------------~~~~RRG~pt~h~~~G~~~ 119 (295)
..|..++..+. +++.+.|.+++....+...-+.+=.|+-|.||+ +| +++.+.||+|+-..+|...
T Consensus 184 KTg~L~~~a~~-~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDi--LD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~ 260 (309)
T 3pde_A 184 KTGALLHYAVQ-AGLILGQAPEAQWPAYLQFADAFGLAFQIYDDI--LDVVSSPAEMGKATQKDADEAKNTYPGKLGLIG 260 (309)
T ss_dssp HTHHHHHHHHH-HHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHH--HHHHCC-----------CTTTSSSHHHHHCHHH
T ss_pred ccHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCCccchhhcCCccHHHHHHHHH
Confidence 44555554433 333344556665666666777778889999999 76 4678899999999999888
Q ss_pred HHHhHhHHhHhhhhhhhh
Q 037594 120 AILACQALHCLAMQHIAI 137 (295)
Q Consensus 120 Ail~gd~L~~~a~~~l~~ 137 (295)
|--.-.-++..|.+.+..
T Consensus 261 a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 261 ANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 877777788888888777
No 60
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=48.91 E-value=2.9 Score=37.45 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=49.2
Q ss_pred CHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhccccC
Q 037594 198 NEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFD 274 (295)
Q Consensus 198 ~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~ 274 (295)
+.+....+...-+-+=.+.-|.||++| .+|++.|++|+-..++...|.-...-+...|.+.+..++
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD-----------~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~ 131 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMD-----------QHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG 131 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHT-----------TCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCC-----------CCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445566667778889999999966 367789999998888876666666677778888777654
No 61
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=42.81 E-value=5 Score=36.72 Aligned_cols=67 Identities=19% Similarity=0.090 Sum_probs=42.4
Q ss_pred CCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 196 GGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 196 g~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
|.+.+....+...-+-+=.+.-|.||++| .+|++.|++|+-..++...|.-...-+...|.+.+...
T Consensus 69 g~~~~~~~~~A~aiEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 135 (341)
T 3mzv_A 69 GYGGPFHVHLAATVEFIHTATLLHDDVVD-----------ESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDT 135 (341)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHHHHHC-----------------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccC-----------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhC
Confidence 33444445566677778889999999976 36778899998888875555555555666666666554
No 62
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=42.14 E-value=9.6 Score=34.07 Aligned_cols=86 Identities=17% Similarity=0.121 Sum_probs=58.0
Q ss_pred CCchhhhhhhhhhhhhh-ccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCc------------cccccCCCCCCcccchh
Q 037594 52 PGGKRLMSTLCIASCEM-IGGSQSVAMSMACAIELLVTMAVIQDDLPCLDN------------DDLRRGKPSNHKVFGEA 118 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~-~g~~~~~~~~~A~avEliH~asLIhDDI~~~D~------------~~~RRG~pt~h~~~G~~ 118 (295)
..|..++..+.+ ++.+ .|.+++....+..--+.+=.++-|.||+ +|- ++.|.||+|+-..+|..
T Consensus 181 KTa~L~~~~~~~-ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~--lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~ 257 (299)
T 1rqj_A 181 KTGALIRAAVRL-GALSAGDKGRRALPVLDKYAESIGLAFQVQDDI--LDVVGDTATLGKRQGADQQLGKSTYPALLGLE 257 (299)
T ss_dssp HTHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHH
T ss_pred hhHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCChhhHHHcCCCcHHHHHHHH
Confidence 345555543322 3333 3445555556666677778888999999 662 45677888888888887
Q ss_pred hHHHhHhHHhHhhhhhhhhhhc
Q 037594 119 TAILACQALHCLAMQHIAIIKA 140 (295)
Q Consensus 119 ~Ail~gd~L~~~a~~~l~~l~~ 140 (295)
.+--...-+...|.+.|..++.
T Consensus 258 ~a~~~~~~~~~~A~~~L~~l~~ 279 (299)
T 1rqj_A 258 QARKKARDLIDDARQSLKQLAE 279 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 7777777778888888877643
No 63
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=41.65 E-value=5.2 Score=36.99 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=35.6
Q ss_pred CCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 197 GNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 197 ~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
.+.+.+..+...-+-+=.+.-|.||++| .+|++.|++|+-..++-..|.-...-+...|.+.+..+
T Consensus 92 ~~~~~~~~~A~avEliH~asLIHDDImD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~ 157 (360)
T 3lmd_A 92 PLSENVIKAAVVVEITHLATLYHDDVMD-----------EASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQL 157 (360)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhCCCcC-----------CCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHC
Confidence 3444444555666777788999999976 36778999999888865544444455555565555554
No 64
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=38.09 E-value=5.7 Score=36.52 Aligned_cols=67 Identities=22% Similarity=0.125 Sum_probs=46.0
Q ss_pred CCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 196 GGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 196 g~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
|.+.+....+...-+-+=.+.-|.||++| .+|++.|++|+-..++...|.-...-+...|.+.+..+
T Consensus 70 g~~~~~~~~~A~avEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 136 (352)
T 3nf2_A 70 GAAPEVGVPGAVAVELVHNFSLLHDDLMD-----------GDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLEL 136 (352)
T ss_dssp TCCGGGGHHHHHHHHHHHHHHHHHHHHHH-----------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCC-----------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444556666777788999999987 35678899988877776555555555666666666655
No 65
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=36.51 E-value=7.1 Score=35.78 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=37.3
Q ss_pred CHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 198 NEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 198 ~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
+.+....+...-+-+=.+.-|.||++| .+|++.|++|+-..+|-..|.-.-.-+...|.+.+...
T Consensus 83 ~~~~~~~~A~aiEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~ 147 (345)
T 3oyr_A 83 DNDHFQKLAAAVEFIHTATLLHDDVVD-----------GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVET 147 (345)
T ss_dssp CSSTHHHHHHHHHHHHHHHHHTTTTC--------------------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcccC-----------CCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhC
Confidence 333344556666777888999999966 36788999999988875555444455555666655543
No 66
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=36.10 E-value=33 Score=30.84 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=31.1
Q ss_pred HHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhccccC
Q 037594 204 RMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFD 274 (295)
Q Consensus 204 ~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~ 274 (295)
.+...-+-+=.+.-|.||++| .+|++.|++|+-..+|...|.-...-+...|.+.+..++
T Consensus 61 ~~A~aiEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 120 (315)
T 3tc1_A 61 NLCTIVEMIQTASLLHDDVID-----------KATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG 120 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---------------------------CCSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcCCCC-----------CCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc
Confidence 455556677788999999966 367789999999998876666666666777777766553
No 67
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=35.82 E-value=7.6 Score=35.38 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=44.7
Q ss_pred CHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 198 NEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 198 ~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
+.+....+...-+-+=.+.-|.||++| .+|++.|++|+-..++...|.-...-+...|.+.+...
T Consensus 64 ~~~~~~~~A~avEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 128 (342)
T 1wy0_A 64 DPLRAIYPAVAIELIHNYSLVHDDIMD-----------MDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARA 128 (342)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHHHHHHH-----------TCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCccc-----------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHc
Confidence 333334455566677778899999987 35778899998888876655555556666666666654
No 68
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=35.54 E-value=6.2 Score=35.99 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=36.3
Q ss_pred CCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhccc
Q 037594 196 GGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAY 272 (295)
Q Consensus 196 g~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~ 272 (295)
|.+.+....+...-+-+=.++-|.||++| .+|++.|++|+-..++...|.-.-.-+...|.+.+..
T Consensus 63 g~~~~~~~~~A~aiEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~ 128 (334)
T 3rmg_A 63 GAVTPATLHAAVSLELLHTASLVHDDVVD-----------ESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQ 128 (334)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCccC-----------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 33444445566667788889999999976 3677889999888776544443444445555555443
No 69
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=34.26 E-value=9.2 Score=34.59 Aligned_cols=63 Identities=24% Similarity=0.260 Sum_probs=42.7
Q ss_pred HHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 200 EEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 200 ~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
+....+...-+-+=.+.-|.||++| .+|++.|++|+-..++...|.-...-+...|.+.+...
T Consensus 64 ~~~~~~A~avEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 126 (325)
T 3aqb_B 64 DDLIRTAVSLELVHMASLVHDDYID-----------NSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATI 126 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------TCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccc-----------CCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhC
Confidence 3344556666677778899999987 35678888888877765555555555566666666554
No 70
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=34.19 E-value=30 Score=30.85 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=47.3
Q ss_pred CCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 197 GNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 197 ~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
.+.+....+...-+-+=.+.-|.||++| .+|++.|++|+-..++...|.-...-+...|.+.+...
T Consensus 42 ~~~~~~~~~A~avEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~ 107 (301)
T 2q80_A 42 VPEDKLQIIIEVTEMLHNASLLIDDIED-----------NSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTL 107 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHccccC-----------CCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHC
Confidence 3444445566677777788899999977 36778899998888876655555666667777777665
No 71
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=33.99 E-value=9.4 Score=34.75 Aligned_cols=66 Identities=8% Similarity=0.026 Sum_probs=45.8
Q ss_pred CCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 197 GNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 197 ~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
.+.+.+..+...-+-+=.+.=|.||++| .+|++.|++|+-..++...|.-...-+...|.+.+...
T Consensus 73 ~~~~~~~~~A~aiEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 138 (334)
T 3pko_A 73 ATPAQLQAGAAAIEILHVGTLIHDDVID-----------DSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKS 138 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCccCC-----------CCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhc
Confidence 3555555666777888889999999977 36778899998877765555544555555555555543
No 72
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=33.08 E-value=26 Score=31.27 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=48.2
Q ss_pred CCchhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCc------cccccCCCCCCcccc--------h
Q 037594 52 PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLDN------DDLRRGKPSNHKVFG--------E 117 (295)
Q Consensus 52 ~~GK~lRp~l~~~~~~~~g~~~~~~~~~A~avEliH~asLIhDDI~~~D~------~~~RRG~pt~h~~~G--------~ 117 (295)
..|..++.. |.+++.+.|.+++....+..--+.+=.|+-|.||+ +|- .+.+.|++|+-..|+ .
T Consensus 166 KTg~L~~~a-~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDi--lD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~l 242 (295)
T 3ipi_A 166 KTASLFAIS-ASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDI--LEFLEVVEGKESKFTSETLPHIYMKSTSKEEAL 242 (295)
T ss_dssp HTHHHHHHH-HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHC-------CCHHHHHTTTSCHHHHH
T ss_pred hhHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCccCCCcccCcccHHHHHHHhcCchhHH
Confidence 445555433 23333444556655555666667777889999999 773 455677777777776 4
Q ss_pred hhHHHhHhHHhHhhhhhhhhhh
Q 037594 118 ATAILACQALHCLAMQHIAIIK 139 (295)
Q Consensus 118 ~~Ail~gd~L~~~a~~~l~~l~ 139 (295)
..|--...-+..+|.+.|..++
T Consensus 243 e~a~~~a~~~~~~A~~~L~~lp 264 (295)
T 3ipi_A 243 KKSIDCVKLHVAAAKETLETFR 264 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 4444445555666666666654
No 73
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=32.04 E-value=10 Score=34.30 Aligned_cols=67 Identities=18% Similarity=0.049 Sum_probs=46.5
Q ss_pred CCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 196 GGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 196 g~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
|.+.+....+...-+-+=.+.=|.||++| .+|++.|++|+-..++...|.-...-+...|.+.+...
T Consensus 55 ~~~~~~~~~~A~avEliH~asLihDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 121 (330)
T 1wmw_A 55 GAPLEAGLEAATALELFQNWVLVHDDIED-----------GSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEG 121 (330)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------TCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHccccc-----------CCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhc
Confidence 33444444566666777788999999977 36778899998888876655555556666666666554
No 74
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=30.27 E-value=7.9 Score=34.48 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=47.9
Q ss_pred CCCHHHHHHHhhhhhhhHHHHHHHhhh--hHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 196 GGNEEEIERMRNFGKYVGMAYQLWNDI--VDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 196 g~~~~~~~~l~~~g~~lG~afQi~DD~--lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
|.+++....+...-+-+=.+.-|.||+ +| .+|++.|++|+-..++...|.-...-+...|.+.+...
T Consensus 62 g~~~~~~~~~A~avEliH~asLIHDDIP~~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~ 130 (284)
T 2ftz_A 62 GVEEEXLLDVAVAVELFHTASLIHDDLPPID-----------NADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXI 130 (284)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT-----------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhCCchhcC-----------CCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444445666667777788899999 87 36778899998888876666666666677777777765
No 75
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=29.99 E-value=34 Score=31.03 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=47.3
Q ss_pred CCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhccccC
Q 037594 197 GNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYFD 274 (295)
Q Consensus 197 ~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l~ 274 (295)
.+.+....+...-+-+=.+.=|.||++| .+|++.|++|+-..+|...|.-...-+...|.+.+..++
T Consensus 57 ~~~~~~~~~A~avEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 123 (340)
T 2e8v_A 57 LPKDQLAIVSQIVELLHNSSLLIDDIED-----------NAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLT 123 (340)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHT-----------TCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCcccc-----------CCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444566666677778889999976 367788999988888766665566666777777777653
No 76
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=25.46 E-value=11 Score=33.74 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=41.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 200 EEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 200 ~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
+....+...-+-+=.+.=|.||++| .+|++.|++|+-..++...|.-...-+...|.+.+...
T Consensus 61 ~~~~~~A~avEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 123 (299)
T 1v4e_A 61 EDAISSLAALELVHLASLLHDDVID-----------GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEI 123 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCCC-----------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334455566667778889999977 35778899988887775554444455555565555544
No 77
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=24.94 E-value=7.2 Score=35.90 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=40.5
Q ss_pred HHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhc
Q 037594 200 EEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQEL 270 (295)
Q Consensus 200 ~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L 270 (295)
+....+...-+-+=.++-|.||++| .+|++.|++|+-..+|...|.-...-+...|.+.+
T Consensus 65 ~~~~~~A~aiEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 124 (358)
T 4dhd_A 65 RPALPAAAIVELIHNYSLIYDDIID-----------RGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAV 124 (358)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHT-----------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccc-----------CCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3334555566777888999999976 35678899988877765555444455555555555
No 78
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=24.70 E-value=16 Score=33.61 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=27.6
Q ss_pred HhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeecc
Q 037594 205 MRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGID 253 (295)
Q Consensus 205 l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le 253 (295)
+...-+-+=.++=|.||++| .+|+|.|++|+-..++..
T Consensus 100 la~aiEliH~asLiHDDimD-----------~s~~RRG~pt~h~~~G~~ 137 (368)
T 2q58_A 100 LGWVVEAIQALILIADDIMD-----------SGKFRRGAPCWYIVHGQS 137 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----------TCCEETTEECHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhhccc-----------CCCCCCCCCccccCcchh
Confidence 33344566677888999976 478899999998777543
No 79
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=24.41 E-value=17 Score=32.04 Aligned_cols=68 Identities=12% Similarity=-0.012 Sum_probs=48.0
Q ss_pred CCCHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 196 GGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 196 g~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
|.+.+....+...-+-+=.+.-|.||+.+- .+|.+.|++|+-..+|...|.-...-+...|.+.|...
T Consensus 56 g~~~~~~~~~A~aiEliH~aSLIHDDI~~d----------D~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~ 123 (274)
T 3kra_B 56 GGDRSQAMAAAAAIHLVHAAAYVHEHLPLT----------DGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGS 123 (274)
T ss_dssp TCCGGGGHHHHHHHHHHHHHHHHHHTCCCS----------SSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCccc----------CCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 445444445666667777889999999821 13457899999999887666666667777777777765
No 80
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=23.99 E-value=12 Score=33.26 Aligned_cols=65 Identities=15% Similarity=-0.039 Sum_probs=42.2
Q ss_pred CHHHHHHHhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhc-ccc
Q 037594 198 NEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQEL-AYF 273 (295)
Q Consensus 198 ~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L-~~l 273 (295)
+++....+...-+-+=.+.=|.||++| .+|++.|++|+-..++...|.-...-+...|.+.+ ...
T Consensus 67 ~~~~~~~~A~avEliH~asLIHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~ 132 (289)
T 2azj_A 67 DIKDSYGGALAIEILHSASLALCDIVD-----------LDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSY 132 (289)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHHHHHHT-----------TCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCC-----------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333455556667778889999966 36778899988877765555545555555666666 444
No 81
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=21.12 E-value=67 Score=29.05 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=27.5
Q ss_pred HhhhhhhhHHHHHHHhhhhHhcCChhhhhhhhhhhhccccCCCceeeccCchhhHHHHHHHHHhhcccc
Q 037594 205 MRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEAKQELAYF 273 (295)
Q Consensus 205 l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~~Dl~~gk~T~p~~~~le~a~~~~~~~~~~A~~~L~~l 273 (295)
+...-+-+=.+.-|.||++| .+|++.|++|+-..++...|.-...-+...|.+.+..+
T Consensus 92 ~A~avEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 149 (348)
T 3apz_A 92 IAEITEMIHVASLLHDDVLD-----------DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAAL 149 (348)
T ss_dssp HHHHHHHHHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccC-----------CCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhC
Confidence 44445556667789999976 36788999999988876655555556666666666554
Done!