RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 037594
(295 letters)
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 151 bits (382), Expect = 1e-44
Identities = 98/287 (34%), Positives = 153/287 (53%), Gaps = 19/287 (6%)
Query: 23 KAKQINEALDEAVP--LPHPAILHEAMRYS-LPGGKRLMSTLCIASCEMIGGSQSVAMSM 79
KQ N+AL + + E M+Y L GGKRL L A+ M G S + +
Sbjct: 10 CVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAP 69
Query: 80 ACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIK 139
A A+E + ++I DDLP +D+DDLRRG P+ H FGEA AILA AL LA ++
Sbjct: 70 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAD 129
Query: 140 AKNIN------------SAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEAS 187
++ SA G G+ GQ +D+++EGK V L L IHRHKTG I A+
Sbjct: 130 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAA 189
Query: 188 IVSGVIIGGGNEEEIERM-RNFGKYVGMAYQLWNDIVDVIG-SPEMREKTGRDMMRDKAT 245
+ G + G + + + +G+A+Q+ +DI+DV+G + + ++ G D K+T
Sbjct: 190 VRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKST 249
Query: 246 YPKLVGIDGSKKHAKELIAEAKQELAYF--DPTRAAPLDHLVNFIVS 290
YP L+G++ ++K A++LI +A+Q L + L+ L ++I+
Sbjct: 250 YPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQ 296
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 140 bits (354), Expect = 1e-40
Identities = 89/281 (31%), Positives = 143/281 (50%), Gaps = 14/281 (4%)
Query: 24 AKQINEALDEAVP-LPHPAILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMAC 81
++N L A+ L E+M YSL GGKR+ L + + + + + M A
Sbjct: 9 IDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAI 68
Query: 82 AIELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIK-- 139
A+E++ T ++I DDLP +DNDD RRGK +NHKV+GE TAILA AL A + I+
Sbjct: 69 ALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRL 128
Query: 140 --------AKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSG 191
+ ++ A G G+ GQ++D+ SEG+ + L L IH+ KTG + +++S
Sbjct: 129 TDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSA 188
Query: 192 VIIGGGNEEEIERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKT-GRDMMRDKATYPKLV 250
I ++ E + ++ ++GM +Q+ +D++D G K G D+ +K+TY L+
Sbjct: 189 ADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLL 248
Query: 251 GIDGSKKHAKELIAEAKQELAYFD-PTRAAPLDHLVNFIVS 290
G DG++ A EL D L +V+ S
Sbjct: 249 GKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYS 289
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 98.2 bits (243), Expect = 1e-24
Identities = 42/251 (16%), Positives = 91/251 (36%), Gaps = 9/251 (3%)
Query: 25 KQINEALDEAVPLPHPAILHEAMRYSLP-GGKRLMSTLCIASCEMIGGSQS-VAMSMACA 82
+++ E +++ + E + LP GK L L I S + G A+S A
Sbjct: 6 EKVKERIEQILS----QFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAA 61
Query: 83 IELLVTMAVIQDDLPCLDNDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAIIKAKN 142
+EL+ +++ DD+ + + A A +
Sbjct: 62 LELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 121
Query: 143 INSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEI 202
++ ++++ S K ++ E I K+G ++ ++ E
Sbjct: 122 RAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLE---GELG 178
Query: 203 ERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKEL 262
E + N G +G YQ+++DI+D G ++ + D+ A++P + ++ + +
Sbjct: 179 EDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMF 238
Query: 263 IAEAKQELAYF 273
L F
Sbjct: 239 ENRDWSGLMSF 249
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 90.5 bits (223), Expect = 2e-21
Identities = 48/289 (16%), Positives = 106/289 (36%), Gaps = 31/289 (10%)
Query: 1 IINSQRNDTLPKFFQVNEYKALKAKQINEALDEAVPLPHPAILHEAMRYSLPGGKRLMST 60
++ +R + + + + + + A L E ++Y+ PGGK
Sbjct: 4 VVEREREEFV------GFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNAPGGKCNRGL 57
Query: 61 LCIASCEMIGGSQSV-------AMSMACAIELLVTMAVIQDDLPCLDNDDLRRGKPSNHK 113
+A+ + G A+++ IEL ++ DD+ D RRG+ +K
Sbjct: 58 TVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAFFLVADDIM--DQSLTRRGQLCWYK 115
Query: 114 VFGEATAILACQALHCLAMQHIAIIKAKNINSAV--------GSEGIAAGQIMDINSEGK 165
G + L ++ + + V + GQ++D+ +
Sbjct: 116 KEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPV 175
Query: 166 E------VSLSELNFIHRHKTGKFIEASIVSG--VIIGGGNEEEIERMRNFGKYVGMAYQ 217
S I ++KT + V+ ++G ++EE E + +G +Q
Sbjct: 176 SKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQ 235
Query: 218 LWNDIVDVIGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELIAEA 266
+ +D +D G P + K G D+ +K ++ + + ++L+ +
Sbjct: 236 IQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDN 284
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 76.3 bits (186), Expect = 1e-16
Identities = 39/225 (17%), Positives = 84/225 (37%), Gaps = 12/225 (5%)
Query: 42 ILHEAMRYSL-PGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDLPCLD 100
IL E +Y L GK++ + L A + + + E+L +++ DD+ D
Sbjct: 6 ILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIE--D 63
Query: 101 NDDLRRGKPSNHKVFGEATAILACQALHCLAMQHIAII----KAKNINSAVGSEGIAAGQ 156
N LRRG P H ++G + I + ++ L ++ + + K + G
Sbjct: 64 NSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGL 123
Query: 157 IMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNFGKYVGMAY 216
+ + E + KTG ++ + E+ + +G+ +
Sbjct: 124 DIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNT----LGLFF 179
Query: 217 QLWNDIVDVIGSPEMREKT-GRDMMRDKATYPKLVGIDGSKKHAK 260
Q+ +D ++ K+ D+ K ++P + I + +
Sbjct: 180 QIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQ 224
>d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase
SerA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 27.6 bits (61), Expect = 1.0
Identities = 12/85 (14%), Positives = 31/85 (36%)
Query: 124 CQALHCLAMQHIAIIKAKNINSAVGSEGIAAGQIMDINSEGKEVSLSELNFIHRHKTGKF 183
+ L A++ + ++ + V + +AA + + S + + + G
Sbjct: 46 VEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSVVDVRAVGAD 105
Query: 184 IEASIVSGVIIGGGNEEEIERMRNF 208
VSG + G ++I ++
Sbjct: 106 GSVVTVSGTLYGPQLSQKIVQINGR 130
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Length = 458
Score = 27.5 bits (61), Expect = 2.4
Identities = 10/98 (10%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 202 IERMRNFGKYVGMAYQLWNDIVDVIGSPEMREKTGRDMMRDKATY----PKLV-GIDGSK 256
++ + + D+ + ++++ Y ++V G+
Sbjct: 139 VDLKDTNPDKMPSYQAIAQDVQYCVDKVHSDGTLKNIIIKNLKKYVIREKEVVEGLKHFI 198
Query: 257 KHAKELIAEAKQELAYFDPTRAAPLDHLVNFIVSFGNN 294
++ K++ E +Y LD+ ++ + G +
Sbjct: 199 RYGKKIFILTNSEYSYSKLL----LDYALSPFLDKGEH 232
>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli
[TaxId: 562]}
Length = 109
Score = 25.7 bits (56), Expect = 3.2
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 37 LPHPAILHEAMRYSLPGGKRLMSTLCIASCEMIGGSQSVAMSMACAIELLVTMAVIQDDL 96
LPH + + G+ ++ A I + S AC + D L
Sbjct: 6 LPHQDLCPDGAVLEANSGETILD---AALRNGIEIEHACEKSCACTTCHCIVREG-FDSL 61
Query: 97 PCLDNDDLRRGKPSNHKVFGEATAILACQA 126
P + + E + L+CQA
Sbjct: 62 PESSEQEDDMLDKAWGL---EPESRLSCQA 88
>d1ryla_ d.276.1.1 (A:) Hypothetical protein yfbM {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 26.4 bits (58), Expect = 3.6
Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 18/130 (13%)
Query: 155 GQIMDINSEGKEVSLSEL-NFIHRHKTGK----FIEASIVSGVIIGGGNEEEIERMRNFG 209
I D S + + + + +F+H TG + +S ++G + E+
Sbjct: 26 DNIHDTLSGLRRLDIDKRWDFLHFGLTGTSAFDPAKNDPLSRAVLGEHSLEDGI------ 79
Query: 210 KYVGMAYQLWNDIVDV------IGSPEMREKTGRDMMRDKATYPKLVGIDGSKKHAKELI 263
+ ++ + E+R++ + + YP + + + I
Sbjct: 80 -DGFLGLTWNQELAATIDRLESLDRNELRKQFSIKRLNEMEIYPGVTFSEELEGQLFASI 138
Query: 264 AEAKQELAYF 273
++L
Sbjct: 139 MLDMEKLISA 148
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae
[TaxId: 666]}
Length = 330
Score = 25.8 bits (55), Expect = 8.1
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 155 GQIMDINSEGKEVSLSELNFIHRHKTGKFIEASIVSGVIIGGGNEEEIERMRNF 208
G + ++ G E+S + + G GVI+ G N + +++
Sbjct: 3 GPLW-LDVAGYELSAEDREILQHPTVG---------GVILFGRNYHDNQQLLAL 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.387
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,092,478
Number of extensions: 51576
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 15
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)