BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037597
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 42 SIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKY 101
S+GSL L+ L L + N I QEL + LE LILD +DL ++ +++ T+L +
Sbjct: 434 SLGSLSKLRDLKL-WLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNW 491
Query: 102 LSMQDSVLKGAL 113
+S+ ++ L G +
Sbjct: 492 ISLSNNRLTGEI 503
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 42 SIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKY 101
S+GSL L+ L L + N I QEL + LE LILD +DL ++ +++ T+L +
Sbjct: 437 SLGSLSKLRDLKL-WLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNW 494
Query: 102 LSMQDSVLKGAL 113
+S+ ++ L G +
Sbjct: 495 ISLSNNRLTGEI 506
>pdb|2QMX|B Chain B, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
pdb|2QMX|A Chain A, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
Length = 283
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 18 LRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTL--YLSYTNFTGTVINQELHN-LTNL 74
R L T L G ++ I+ S PS K YL Y +F G +Q +HN L NL
Sbjct: 215 FRALATFALRGIDLTKIE---------SRPSRKKAFEYLFYADFIGHREDQNVHNALENL 265
Query: 75 EEL 77
E
Sbjct: 266 REF 268
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGS 37
+S N I L P ++GLR LN+LVL G ++ + S
Sbjct: 63 LSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKS 98
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGS 37
+S N I L P ++GLR LN+LVL G ++ + S
Sbjct: 63 LSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKS 98
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 29/124 (23%)
Query: 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMID---------------GSKALQSIGS 45
+S N+I L +P D L +L L L + +D LQ+I
Sbjct: 59 LSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC 117
Query: 46 LP--SLKTLYLSYTNFTGTVINQELHNLTNLEEL-----------ILDESDLHVSQLLQS 92
P SL+ L LS+ +F + +E NLT L L +L + LH+S +L
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177
Query: 93 IASF 96
+ S+
Sbjct: 178 LVSY 181
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 11 VPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHN 70
+P G+ L LVL + A S PSL+ LY+ + + L
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINA----ASFPSLRDLYIKGNMRKLDLGTRCLEK 347
Query: 71 LTNLEELILDESDLHVSQLLQ-SIASFTSLKYLSM 104
L NL++L L SD+ S + + L+YL++
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNL 382
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 38 KALQSIGSLPSLKTLYLSYTN-FTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASF 96
+AL+ +G+L +L L +Y++ T +I+ L L L + ESD+HVSQ+ +I+
Sbjct: 664 RALK-LGTLSALDILIKNYSDSLTAAMIDAVLDELPPL----ISESDMHVSQM--AISFL 716
Query: 97 TSL 99
T+L
Sbjct: 717 TTL 719
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 38 KALQSIGSLPSLKTLYLSYTN-FTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASF 96
+AL+ +G+L +L L +Y++ T +I+ L L L + ESD+HVSQ+ +I+
Sbjct: 687 RALK-LGTLSALDILIKNYSDSLTAAMIDAVLDELPPL----ISESDMHVSQM--AISFL 739
Query: 97 TSL 99
T+L
Sbjct: 740 TTL 742
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60
++ N I +L + + GL L LV T +A ++ IG L +LK L +++
Sbjct: 83 LTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQ 137
Query: 61 GTVINQELHNLTNLEELIL 79
+ + NLTNLE L L
Sbjct: 138 SFKLPEYFSNLTNLEHLDL 156
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60
++ N I +L + + GL L LV T +A ++ IG L +LK L +++
Sbjct: 84 LTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQ 138
Query: 61 GTVINQELHNLTNLEELIL 79
+ + NLTNLE L L
Sbjct: 139 SFKLPEYFSNLTNLEHLDL 157
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60
++ N I +L + + GL L LV T +A ++ IG L +LK L +++
Sbjct: 85 LTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQ 139
Query: 61 GTVINQELHNLTNLEELIL 79
+ + NLTNLE L L
Sbjct: 140 SFKLPEYFSNLTNLEHLDL 158
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60
++ N I +L + + GL L LV T +A ++ IG L +LK L +++
Sbjct: 84 LTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQ 138
Query: 61 GTVINQELHNLTNLEELIL 79
+ + NLTNLE L L
Sbjct: 139 SFKLPEYFSNLTNLEHLDL 157
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60
++ N I +L + + GL L LV T +A ++ IG L +LK L +++
Sbjct: 107 LTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQ 161
Query: 61 GTVINQELHNLTNLEELIL 79
+ + NLTNLE L L
Sbjct: 162 SFKLPEYFSNLTNLEHLDL 180
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60
++ N I +L + + GL L LV T +A ++ IG L +LK L +++
Sbjct: 83 LTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQ 137
Query: 61 GTVINQELHNLTNLEELIL 79
+ + NLTNLE L L
Sbjct: 138 SFKLPEYFSNLTNLEHLDL 156
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60
++ N I +L + + GL L LV T +A ++ IG L +LK L +++
Sbjct: 83 LTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQ 137
Query: 61 GTVINQELHNLTNLEELIL 79
+ + NLTNLE L L
Sbjct: 138 SFKLPEYFSNLTNLEHLDL 156
>pdb|1LM5|A Chain A, Structures Of Two Intermediate Filament-Binding Fragments
Of Desmoplakin Reveal A Unique Repeat Motif Structure
pdb|1LM5|B Chain B, Structures Of Two Intermediate Filament-Binding Fragments
Of Desmoplakin Reveal A Unique Repeat Motif Structure
Length = 214
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 53 YLSYTNFTGTVINQELHNLTNLEELILDES-DLHVSQLLQSIASFTSL 99
+L + TG +++ E+H + EE I D +Q LQ +S+ +
Sbjct: 118 FLEFQYLTGGLVDPEVHGRISTEEAIRKGFIDGRAAQRLQDTSSYAKI 165
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 8 NLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQE 67
N + ++ +L+TLVL G + + A S+ SLK L+L T +
Sbjct: 67 NWIHEDTFQSHHQLSTLVLTGNPLIFM----AETSLNGPKSLKHLFLIQTGISNLEF-IP 121
Query: 68 LHNLTNLEELILDESDLHVSQL 89
+HNL NLE L L + H+S +
Sbjct: 122 VHNLENLESLYLGSN--HISSI 141
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60
++ N I +L + + GL L LV T +A ++ IG L +LK L +++
Sbjct: 85 LTGNPIQSLAL-GAFSGLSSLQKLVALETNLASLENFP----IGHLKTLKELNVAHNLIQ 139
Query: 61 GTVINQELHNLTNLEELIL 79
+ + NLTNLE L L
Sbjct: 140 SFKLPEYFSNLTNLEHLDL 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,277,035
Number of Sequences: 62578
Number of extensions: 113400
Number of successful extensions: 326
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 45
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)