Query 037597
Match_columns 130
No_of_seqs 110 out of 2363
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.6 1.2E-15 2.6E-20 121.3 8.7 120 2-129 148-267 (968)
2 PLN00113 leucine-rich repeat r 99.6 3.6E-15 7.9E-20 118.5 8.2 119 2-128 172-290 (968)
3 KOG0617 Ras suppressor protein 99.5 4.7E-16 1E-20 100.4 -3.5 117 2-129 41-180 (264)
4 KOG0617 Ras suppressor protein 99.5 6.5E-16 1.4E-20 99.7 -3.9 108 2-121 64-195 (264)
5 PLN03150 hypothetical protein; 99.4 4.7E-12 1E-16 97.0 8.8 89 21-115 420-508 (623)
6 PLN03150 hypothetical protein; 99.3 4.9E-12 1.1E-16 96.9 8.3 108 1-115 425-533 (623)
7 KOG4194 Membrane glycoprotein 99.3 2.5E-13 5.4E-18 101.2 -0.6 118 3-128 278-422 (873)
8 KOG0472 Leucine-rich repeat pr 99.3 6.7E-13 1.5E-17 95.2 1.2 116 2-129 420-535 (565)
9 PF14580 LRR_9: Leucine-rich r 99.2 1.2E-11 2.6E-16 80.7 4.6 114 2-127 27-145 (175)
10 KOG4194 Membrane glycoprotein 99.2 2.6E-12 5.7E-17 95.9 -0.7 102 2-110 253-354 (873)
11 KOG0444 Cytoskeletal regulator 99.2 8.1E-13 1.8E-17 99.6 -3.9 115 2-127 230-344 (1255)
12 PF14580 LRR_9: Leucine-rich r 99.1 1.2E-10 2.5E-15 76.1 5.4 104 14-129 14-120 (175)
13 KOG0472 Leucine-rich repeat pr 99.1 1.2E-12 2.5E-17 94.0 -5.0 100 17-127 181-302 (565)
14 KOG0532 Leucine-rich repeat (L 99.0 4.1E-11 9E-16 89.1 -0.5 84 39-129 158-241 (722)
15 KOG0618 Serine/threonine phosp 99.0 1E-10 2.2E-15 90.9 0.9 117 2-129 367-483 (1081)
16 PF13855 LRR_8: Leucine rich r 99.0 3E-10 6.5E-15 61.7 2.4 60 19-83 1-60 (61)
17 KOG4237 Extracellular matrix p 99.0 3.7E-11 8.1E-16 86.1 -2.3 120 1-128 74-194 (498)
18 PF13855 LRR_8: Leucine rich r 98.9 9E-10 2E-14 59.8 3.5 61 47-109 1-61 (61)
19 KOG0444 Cytoskeletal regulator 98.9 8.2E-11 1.8E-15 89.1 -0.9 118 2-128 15-156 (1255)
20 KOG1259 Nischarin, modulator o 98.9 3.1E-10 6.7E-15 79.4 -0.1 97 1-110 291-387 (490)
21 KOG0618 Serine/threonine phosp 98.8 2.1E-10 4.5E-15 89.3 -2.0 103 18-130 358-460 (1081)
22 PLN03210 Resistant to P. syrin 98.8 2.9E-08 6.4E-13 81.0 9.7 107 12-129 605-711 (1153)
23 PLN03210 Resistant to P. syrin 98.8 3.6E-08 7.7E-13 80.5 9.9 105 12-129 795-900 (1153)
24 cd00116 LRR_RI Leucine-rich re 98.7 9.9E-09 2.1E-13 72.3 4.1 40 71-110 192-234 (319)
25 KOG0532 Leucine-rich repeat (L 98.7 1.3E-09 2.9E-14 81.3 -0.4 101 2-115 151-251 (722)
26 cd00116 LRR_RI Leucine-rich re 98.7 1.8E-08 3.8E-13 71.0 3.1 107 21-129 110-228 (319)
27 PRK15370 E3 ubiquitin-protein 98.6 7.3E-08 1.6E-12 75.4 6.2 55 48-110 242-296 (754)
28 PRK15370 E3 ubiquitin-protein 98.6 3.6E-07 7.8E-12 71.6 8.9 105 2-129 186-290 (754)
29 PRK15387 E3 ubiquitin-protein 98.6 5.3E-08 1.1E-12 76.2 3.8 62 47-115 402-463 (788)
30 PRK15387 E3 ubiquitin-protein 98.5 1.3E-07 2.9E-12 74.1 5.0 70 48-129 383-452 (788)
31 KOG4658 Apoptotic ATPase [Sign 98.5 1E-07 2.2E-12 75.8 4.3 102 20-129 546-649 (889)
32 KOG4237 Extracellular matrix p 98.5 3E-08 6.5E-13 71.5 1.3 92 12-109 267-358 (498)
33 KOG1259 Nischarin, modulator o 98.5 1.5E-08 3.3E-13 71.1 -0.7 101 1-112 314-414 (490)
34 COG4886 Leucine-rich repeat (L 98.4 1.1E-07 2.3E-12 69.3 2.6 89 17-115 114-203 (394)
35 KOG4658 Apoptotic ATPase [Sign 98.4 8.6E-08 1.9E-12 76.1 2.0 89 12-107 564-652 (889)
36 KOG1859 Leucine-rich repeat pr 98.4 3.1E-09 6.7E-14 81.5 -6.0 113 2-128 172-285 (1096)
37 COG4886 Leucine-rich repeat (L 98.4 1.5E-07 3.3E-12 68.5 2.7 113 2-127 124-237 (394)
38 PF12799 LRR_4: Leucine Rich r 98.4 6.4E-07 1.4E-11 45.4 4.1 39 73-114 2-40 (44)
39 PF12799 LRR_4: Leucine Rich r 98.4 9.6E-07 2.1E-11 44.7 4.5 37 19-60 1-37 (44)
40 KOG4579 Leucine-rich repeat (L 98.4 2.6E-08 5.7E-13 62.4 -1.8 88 18-115 52-140 (177)
41 KOG4579 Leucine-rich repeat (L 98.3 1E-07 2.3E-12 59.8 -0.2 100 20-127 28-128 (177)
42 KOG1644 U2-associated snRNP A' 98.2 2.9E-06 6.2E-11 56.4 4.2 65 43-110 60-126 (233)
43 KOG1644 U2-associated snRNP A' 98.1 1E-05 2.3E-10 53.8 5.9 96 1-106 49-149 (233)
44 KOG0531 Protein phosphatase 1, 98.1 8.2E-07 1.8E-11 65.4 0.2 86 14-110 90-175 (414)
45 KOG3207 Beta-tubulin folding c 98.0 1.5E-06 3.2E-11 63.5 0.8 92 14-107 141-232 (505)
46 KOG1909 Ran GTPase-activating 98.0 5.2E-06 1.1E-10 59.1 2.8 126 1-129 99-248 (382)
47 KOG1859 Leucine-rich repeat pr 97.9 3.6E-07 7.8E-12 70.6 -4.5 97 1-110 194-292 (1096)
48 KOG3207 Beta-tubulin folding c 97.7 4.6E-06 1E-10 61.0 -1.7 69 46-115 245-318 (505)
49 KOG0531 Protein phosphatase 1, 97.6 1.9E-05 4E-10 58.3 0.7 99 17-128 70-168 (414)
50 KOG3665 ZYG-1-like serine/thre 97.5 0.00022 4.7E-09 56.0 5.6 85 17-107 146-230 (699)
51 KOG2739 Leucine-rich acidic nu 97.5 6E-05 1.3E-09 51.8 1.7 42 43-85 61-104 (260)
52 KOG3665 ZYG-1-like serine/thre 97.4 0.00013 2.9E-09 57.1 2.8 104 19-130 122-228 (699)
53 KOG1909 Ran GTPase-activating 97.3 0.00011 2.5E-09 52.5 1.2 45 16-60 210-254 (382)
54 KOG2739 Leucine-rich acidic nu 97.0 0.00064 1.4E-08 46.9 2.9 88 14-105 60-151 (260)
55 KOG2982 Uncharacterized conser 97.0 0.0012 2.6E-08 46.8 4.0 54 74-127 226-284 (418)
56 PRK15386 type III secretion pr 96.8 0.0074 1.6E-07 44.7 6.9 13 98-110 157-169 (426)
57 KOG2982 Uncharacterized conser 96.7 0.0009 2E-08 47.5 1.7 84 19-108 71-157 (418)
58 COG5238 RNA1 Ran GTPase-activa 96.7 0.0014 2.9E-08 46.1 2.6 108 1-110 99-227 (388)
59 PF00560 LRR_1: Leucine Rich R 96.6 0.0011 2.4E-08 28.2 1.0 22 98-121 1-22 (22)
60 KOG2123 Uncharacterized conser 96.6 0.00014 3.1E-09 50.9 -3.0 64 17-86 39-102 (388)
61 KOG2123 Uncharacterized conser 96.4 0.00025 5.4E-09 49.8 -2.5 84 18-112 18-103 (388)
62 PF13306 LRR_5: Leucine rich r 96.4 0.017 3.7E-07 35.2 5.9 36 43-80 31-66 (129)
63 PF13306 LRR_5: Leucine rich r 96.3 0.019 4.1E-07 35.0 5.8 101 12-124 28-128 (129)
64 PRK15386 type III secretion pr 96.1 0.018 3.8E-07 42.8 5.4 59 17-86 50-109 (426)
65 KOG2120 SCF ubiquitin ligase, 96.0 0.0007 1.5E-08 48.0 -1.8 44 14-60 229-273 (419)
66 KOG2120 SCF ubiquitin ligase, 96.0 0.0059 1.3E-07 43.5 2.6 65 15-84 206-272 (419)
67 PF13504 LRR_7: Leucine rich r 95.2 0.015 3.2E-07 23.0 1.4 13 98-110 2-14 (17)
68 smart00369 LRR_TYP Leucine-ric 94.4 0.037 8E-07 24.2 1.8 18 97-115 2-19 (26)
69 smart00370 LRR Leucine-rich re 94.4 0.037 8E-07 24.2 1.8 18 97-115 2-19 (26)
70 COG5238 RNA1 Ran GTPase-activa 93.0 0.22 4.8E-06 35.4 4.3 91 15-110 26-133 (388)
71 KOG0473 Leucine-rich repeat pr 91.4 0.0018 4E-08 44.5 -7.1 88 14-110 37-124 (326)
72 KOG0473 Leucine-rich repeat pr 91.1 0.0022 4.8E-08 44.1 -6.9 81 42-128 37-117 (326)
73 KOG1947 Leucine rich repeat pr 90.0 0.55 1.2E-05 34.8 4.2 92 15-108 210-306 (482)
74 PF13516 LRR_6: Leucine Rich r 88.0 0.21 4.5E-06 21.2 0.4 12 48-59 3-14 (24)
75 smart00364 LRR_BAC Leucine-ric 87.8 0.4 8.6E-06 21.2 1.3 18 97-115 2-19 (26)
76 KOG3864 Uncharacterized conser 86.9 0.41 8.9E-06 32.3 1.5 83 18-106 100-185 (221)
77 KOG3864 Uncharacterized conser 84.0 0.25 5.4E-06 33.3 -0.5 63 46-110 100-165 (221)
78 KOG1947 Leucine rich repeat pr 82.9 1 2.2E-05 33.4 2.3 109 17-129 186-302 (482)
79 smart00365 LRR_SD22 Leucine-ri 80.5 1.9 4.1E-05 19.0 1.8 14 47-60 2-15 (26)
80 smart00368 LRR_RI Leucine rich 79.6 1.9 4.2E-05 19.1 1.8 13 48-60 3-15 (28)
81 KOG3763 mRNA export factor TAP 78.2 2.7 5.9E-05 32.6 3.1 82 17-103 216-307 (585)
82 TIGR00864 PCC polycystin catio 51.7 15 0.00033 34.1 2.9 33 25-61 1-33 (2740)
83 smart00367 LRR_CC Leucine-rich 46.5 17 0.00036 15.4 1.4 15 72-86 2-17 (26)
84 KOG4308 LRR-containing protein 46.3 1.4 2.9E-05 33.7 -3.6 14 18-31 203-216 (478)
85 TIGR00864 PCC polycystin catio 38.7 24 0.00052 33.0 2.1 30 1-31 2-31 (2740)
86 KOG4341 F-box protein containi 38.5 31 0.00067 26.3 2.4 36 71-106 400-435 (483)
87 KOG3763 mRNA export factor TAP 36.6 31 0.00067 27.1 2.2 63 45-111 216-284 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.63 E-value=1.2e-15 Score=121.26 Aligned_cols=120 Identities=24% Similarity=0.341 Sum_probs=73.9
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.+++.. |..++.+++|++|++++|.+ .+..|..++.+++|++|++++|.+++..|. .+..+.+|++|++++
T Consensus 148 s~n~~~~~~-p~~~~~l~~L~~L~L~~n~l----~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 148 SNNMLSGEI-PNDIGSFSSLKVLDLGGNVL----VGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGY 221 (968)
T ss_pred cCCcccccC-ChHHhcCCCCCEEECccCcc----cccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcC
Confidence 445555444 55666666666666666666 455666666666666666666666655555 566666666666666
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
|.+.+ ..|..++.+++|++|++++|.+.+.+|. .+.++++|++|.+
T Consensus 222 n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L 267 (968)
T PLN00113 222 NNLSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFL 267 (968)
T ss_pred CccCC-cCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEEC
Confidence 66665 5566666666666666666666656665 5566666655543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.59 E-value=3.6e-15 Score=118.50 Aligned_cols=119 Identities=24% Similarity=0.403 Sum_probs=67.2
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.+.+.. |..+..+++|++|++++|.+ .+..|..++.+.+|+.+++++|.+++..|. .+..+++|++|++++
T Consensus 172 ~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 172 GGNVLVGKI-PNSLTNLTSLEFLTLASNQL----VGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVY 245 (968)
T ss_pred ccCcccccC-ChhhhhCcCCCeeeccCCCC----cCcCChHHcCcCCccEEECcCCccCCcCCh-hHhcCCCCCEEECcC
Confidence 455555444 55666666666666666665 445555566666666666666665555555 555555566666655
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~ 128 (130)
|.+.+ ..|..++.+++|+.|++++|.+.+.+|. .+.++++|++|.
T Consensus 246 n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~ 290 (968)
T PLN00113 246 NNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLD 290 (968)
T ss_pred ceecc-ccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEE
Confidence 55554 4455555555555555555555545554 444444444443
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=4.7e-16 Score=100.38 Aligned_cols=117 Identities=25% Similarity=0.336 Sum_probs=65.4
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.++. +|+.+..+.+|+.|.+.+|++ ..+|.+++.++.|+.|++..|++. .+|. .|+.++.|+.|++++
T Consensus 41 SHNKl~~--vppnia~l~nlevln~~nnqi-----e~lp~~issl~klr~lnvgmnrl~-~lpr-gfgs~p~levldlty 111 (264)
T KOG0617|consen 41 SHNKLTV--VPPNIAELKNLEVLNLSNNQI-----EELPTSISSLPKLRILNVGMNRLN-ILPR-GFGSFPALEVLDLTY 111 (264)
T ss_pred ccCceee--cCCcHHHhhhhhhhhcccchh-----hhcChhhhhchhhhheecchhhhh-cCcc-ccCCCchhhhhhccc
Confidence 4555543 355566666666666666665 455556666666666666655555 4555 555555555555555
Q ss_pred CCCCCch-----------------------hHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 82 SDLHVSQ-----------------------LLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 82 n~~~~~~-----------------------~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
|.+..-. +|..++.+++|+.|.+..|.+- .+|. ..+.+++|+++.+
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpk-eig~lt~lrelhi 180 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPK-EIGDLTRLRELHI 180 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcH-HHHHHHHHHHHhc
Confidence 5443212 4555555555556655555555 5555 5555555555543
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=6.5e-16 Score=99.74 Aligned_cols=108 Identities=31% Similarity=0.449 Sum_probs=81.1
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCC-c-------------------
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT-G------------------- 61 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~------------------- 61 (130)
.+|.|+. +|..++.+++|+.|.+..|.+ ..+|..|+.++.|++||+.+|.+. .
T Consensus 64 ~nnqie~--lp~~issl~klr~lnvgmnrl-----~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 64 SNNQIEE--LPTSISSLPKLRILNVGMNRL-----NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred ccchhhh--cChhhhhchhhhheecchhhh-----hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence 4556655 577777777777777777776 466777777777777777666553 1
Q ss_pred ----ccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCc
Q 037597 62 ----TVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRV 121 (130)
Q Consensus 62 ----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l 121 (130)
.+|. .+..+++|+-|.+..|.+.. +|..++.+..|++|++++|.+. .+|. .++++
T Consensus 137 ndfe~lp~-dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgnrl~-vlpp-el~~l 195 (264)
T KOG0617|consen 137 NDFEILPP-DVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGNRLT-VLPP-ELANL 195 (264)
T ss_pred CCcccCCh-hhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccceee-ecCh-hhhhh
Confidence 2343 57778889999999999887 8999999999999999999999 6666 45554
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.35 E-value=4.7e-12 Score=96.98 Aligned_cols=89 Identities=24% Similarity=0.341 Sum_probs=58.3
Q ss_pred CcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCC
Q 037597 21 LNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLK 100 (130)
Q Consensus 21 L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 100 (130)
++.|++++|.+ .+.+|..++.+++|+.|++++|.+++.+|. .+..+++|+.|++++|.+.+ .+|..++.+++|+
T Consensus 420 v~~L~L~~n~L----~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQGL----RGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCCc----cccCCHHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCC
Confidence 55666666666 456666666666666666666666666665 56666666666666666665 5666666666666
Q ss_pred EEeccCcccccccCc
Q 037597 101 YLSMQDSVLKGALHG 115 (130)
Q Consensus 101 ~L~l~~n~l~~~~p~ 115 (130)
.|++++|.++|.+|.
T Consensus 494 ~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 494 ILNLNGNSLSGRVPA 508 (623)
T ss_pred EEECcCCcccccCCh
Confidence 666666666666665
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.34 E-value=4.9e-12 Score=96.90 Aligned_cols=108 Identities=25% Similarity=0.423 Sum_probs=93.8
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.+.+.. |..+..+++|+.|++++|.+ .+.+|+.++.+++|+.|++++|.+++.+|. .+..+++|+.|+++
T Consensus 425 L~~n~L~g~i-p~~i~~L~~L~~L~Ls~N~l----~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~L~Ls 498 (623)
T PLN03150 425 LDNQGLRGFI-PNDISKLRHLQSINLSGNSI----RGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNLN 498 (623)
T ss_pred CCCCCccccC-CHHHhCCCCCCEEECCCCcc----cCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCEEECc
Confidence 4677787777 88999999999999999999 688999999999999999999999999998 99999999999999
Q ss_pred CCCCCCchhHHhhhcC-CCCCEEeccCcccccccCc
Q 037597 81 ESDLHVSQLLQSIASF-TSLKYLSMQDSVLKGALHG 115 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~ 115 (130)
+|.+.+ .+|..++.. .++..+++.+|......|.
T Consensus 499 ~N~l~g-~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 499 GNSLSG-RVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCcccc-cCChHHhhccccCceEEecCCccccCCCC
Confidence 999998 889888754 4677889988865434443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.30 E-value=2.5e-13 Score=101.22 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=55.3
Q ss_pred CCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHh---------------
Q 037597 3 ANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQE--------------- 67 (130)
Q Consensus 3 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~--------------- 67 (130)
.|+++... -..+-++++|+.|++++|.+ ....++.+.....|++|++++|.++ .++++.
T Consensus 278 ~N~l~~vn-~g~lfgLt~L~~L~lS~NaI----~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 278 TNRLQAVN-EGWLFGLTSLEQLDLSYNAI----QRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred cchhhhhh-cccccccchhhhhccchhhh----heeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhccccc
Confidence 34444433 34444555555555555555 2333444444555555555555555 222223
Q ss_pred ---------hcCCCCCcEEEccCCCCCCchhH---HhhhcCCCCCEEeccCcccccccCcccccCcccceeee
Q 037597 68 ---------LHNLTNLEELILDESDLHVSQLL---QSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 68 ---------~~~l~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~ 128 (130)
|.++++|+.|+|++|.+++ .+- ..+..+++|+.|++.+|++. .||...|..+..|.+|.
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLD 422 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecCceee-ecchhhhccCcccceec
Confidence 4444444444444444433 111 12344555555555555555 45544455555554443
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.29 E-value=6.7e-13 Score=95.21 Aligned_cols=116 Identities=24% Similarity=0.296 Sum_probs=83.7
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
+.|.++- +|..++.++++..|++++|.+ ..+|..++.+..||.++++.|++. .+|. .+..+..++.+..++
T Consensus 420 snn~isf--v~~~l~~l~kLt~L~L~NN~L-----n~LP~e~~~lv~Lq~LnlS~NrFr-~lP~-~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 420 SNNKISF--VPLELSQLQKLTFLDLSNNLL-----NDLPEEMGSLVRLQTLNLSFNRFR-MLPE-CLYELQTLETLLASN 490 (565)
T ss_pred hcCcccc--chHHHHhhhcceeeecccchh-----hhcchhhhhhhhhheecccccccc-cchH-HHhhHHHHHHHHhcc
Confidence 3444443 488899999999999999988 678899999999999999999887 6676 555555556665666
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
|++.. .-+..+++|.+|..||+.+|.+. .+|. .+++|++++++.+
T Consensus 491 nqi~~-vd~~~l~nm~nL~tLDL~nNdlq-~IPp-~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 491 NQIGS-VDPSGLKNMRNLTTLDLQNNDLQ-QIPP-ILGNMTNLRHLEL 535 (565)
T ss_pred ccccc-cChHHhhhhhhcceeccCCCchh-hCCh-hhccccceeEEEe
Confidence 66665 33334666667777777766666 6666 6666766666654
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=1.2e-11 Score=80.74 Aligned_cols=114 Identities=26% Similarity=0.376 Sum_probs=40.0
Q ss_pred CCCCCCCccCccccC-CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhh-cCCCCCcEEEc
Q 037597 2 SANAIDNLVVPKDYR-GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQEL-HNLTNLEELIL 79 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~~l~~L~~L~l 79 (130)
++|.|+. -+.++ .+.+++.|++++|.++ .+ +.+..++.|++|++++|.++ .+.. .+ ..+++|++|.+
T Consensus 27 ~~n~I~~---Ie~L~~~l~~L~~L~Ls~N~I~-----~l-~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 27 RGNQIST---IENLGATLDKLEVLDLSNNQIT-----KL-EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLPNLQELYL 95 (175)
T ss_dssp ------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS----S-CH-HHHHH-TT--EEE-
T ss_pred ccccccc---ccchhhhhcCCCEEECCCCCCc-----cc-cCccChhhhhhcccCCCCCC-cccc-chHHhCCcCCEEEC
Confidence 4555554 12444 4667777777777772 22 24556777777777777776 4443 33 34677777777
Q ss_pred cCCCCCCchhHHhhhcCCCCCEEeccCcccccccCc---ccccCcccceee
Q 037597 80 DESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHG---QGKLRVSEAFVI 127 (130)
Q Consensus 80 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~---~~~~~l~~l~~l 127 (130)
++|.+....--..+..++.|+.|++.+|++. ..+. ..+..+++|+.|
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhhee
Confidence 7777655111234566777777777777776 3333 334445555544
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.18 E-value=2.6e-12 Score=95.89 Aligned_cols=102 Identities=23% Similarity=0.246 Sum_probs=64.7
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
..|.|+... ...|-.+.++++|++..|++ +..--..+..+++|+.|++++|.+....++ .+..+++|++|+|++
T Consensus 253 qrN~I~kL~-DG~Fy~l~kme~l~L~~N~l----~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 253 QRNDISKLD-DGAFYGLEKMEHLNLETNRL----QAVNEGWLFGLTSLEQLDLSYNAIQRIHID-SWSFTQKLKELDLSS 326 (873)
T ss_pred hhcCccccc-Ccceeeecccceeecccchh----hhhhcccccccchhhhhccchhhhheeecc-hhhhcccceeEeccc
Confidence 467777655 66677778888888888877 233333456677888888888887766666 666677788888888
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccc
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
|.++. .-++.+..+..|++|.++.|.+.
T Consensus 327 N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 327 NRITR-LDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred ccccc-CChhHHHHHHHhhhhcccccchH
Confidence 77765 33334444333444444444333
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.16 E-value=8.1e-13 Score=99.61 Aligned_cols=115 Identities=23% Similarity=0.329 Sum_probs=67.6
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|++.. +|+++-++++|+.|++++|++ ..+.-..+.-.+|++|++++|+++ .+|+ ++..++.|+.|.+.+
T Consensus 230 S~N~Lp~--vPecly~l~~LrrLNLS~N~i-----teL~~~~~~W~~lEtLNlSrNQLt-~LP~-avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 230 SENNLPI--VPECLYKLRNLRRLNLSGNKI-----TELNMTEGEWENLETLNLSRNQLT-VLPD-AVCKLTKLTKLYANN 300 (1255)
T ss_pred cccCCCc--chHHHhhhhhhheeccCcCce-----eeeeccHHHHhhhhhhccccchhc-cchH-HHhhhHHHHHHHhcc
Confidence 4555554 466666666666666666665 233333334445566666666665 5565 666666666666666
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVI 127 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l 127 (130)
|++.-+-+|..++.+.+|++++..+|++. -+|+ ++++|..|+.|
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPE-glcRC~kL~kL 344 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPE-GLCRCVKLQKL 344 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhccccc-cCch-hhhhhHHHHHh
Confidence 65433236666666666666666666666 6666 66666665544
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=1.2e-10 Score=76.08 Aligned_cols=104 Identities=21% Similarity=0.347 Sum_probs=38.6
Q ss_pred ccCCCCCCcEEEcCCcccccccCCchhhhcC-CCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHh
Q 037597 14 DYRGLRKLNTLVLGGTEVAMIDGSKALQSIG-SLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQS 92 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 92 (130)
.+.+...+++|++.+|.++. + +.++ .+.+|+.|++++|.++ .++ .+..++.|++|.+++|.++. +...
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~--i~~~ 82 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISS--ISEG 82 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S---CHH
T ss_pred cccccccccccccccccccc-----c-cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCc--cccc
Confidence 34555678999999999932 2 3455 5789999999999998 555 47788999999999999998 5444
Q ss_pred h-hcCCCCCEEeccCcccccccCc-ccccCcccceeeee
Q 037597 93 I-ASFTSLKYLSMQDSVLKGALHG-QGKLRVSEAFVILI 129 (130)
Q Consensus 93 ~-~~~~~L~~L~l~~n~l~~~~p~-~~~~~l~~l~~l~~ 129 (130)
+ ..+++|++|++++|++. .+-. ..+..++.|+++.+
T Consensus 83 l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-
T ss_pred hHHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeec
Confidence 4 47999999999999998 5544 45677888888875
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.11 E-value=1.2e-12 Score=94.03 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=61.2
Q ss_pred CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccc----------------------hHhhcCCCCC
Q 037597 17 GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVI----------------------NQELHNLTNL 74 (130)
Q Consensus 17 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~----------------------~~~~~~l~~L 74 (130)
.|+.|+++|...|-+ +.+|+.++.+.+|..++++.|++. ++| .+....+.++
T Consensus 181 ~m~~L~~ld~~~N~L-----~tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l 254 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLL-----ETLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSL 254 (565)
T ss_pred HHHHHHhcccchhhh-----hcCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccc
Confidence 355555555555555 455555555666666666555554 444 3233456667
Q ss_pred cEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceee
Q 037597 75 EELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVI 127 (130)
Q Consensus 75 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l 127 (130)
..|++..|+++. +|..+.-+++|..||+++|.++ .+|. ..+++ .|+.+
T Consensus 255 ~vLDLRdNklke--~Pde~clLrsL~rLDlSNN~is-~Lp~-sLgnl-hL~~L 302 (565)
T KOG0472|consen 255 LVLDLRDNKLKE--VPDEICLLRSLERLDLSNNDIS-SLPY-SLGNL-HLKFL 302 (565)
T ss_pred eeeecccccccc--CchHHHHhhhhhhhcccCCccc-cCCc-ccccc-eeeeh
Confidence 777777777776 6777777777777777777777 6666 56666 44443
No 14
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=4.1e-11 Score=89.14 Aligned_cols=84 Identities=21% Similarity=0.249 Sum_probs=45.4
Q ss_pred hhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccc
Q 037597 39 ALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGK 118 (130)
Q Consensus 39 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 118 (130)
+|..++.+.+|..+|.+.|.+. .+|+ .+.++.+|+.+.+..|.+.. +|..+. .-.|..||++.|+++ .+|- .|
T Consensus 158 lp~~ig~~~tl~~ld~s~nei~-slps-ql~~l~slr~l~vrRn~l~~--lp~El~-~LpLi~lDfScNkis-~iPv-~f 230 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNEIQ-SLPS-QLGYLTSLRDLNVRRNHLED--LPEELC-SLPLIRLDFSCNKIS-YLPV-DF 230 (722)
T ss_pred CCcccccchhHHHhhhhhhhhh-hchH-HhhhHHHHHHHHHhhhhhhh--CCHHHh-CCceeeeecccCcee-ecch-hh
Confidence 3344444444444444444443 3444 44555555555555555554 455555 333566667666666 6666 66
Q ss_pred cCcccceeeee
Q 037597 119 LRVSEAFVILI 129 (130)
Q Consensus 119 ~~l~~l~~l~~ 129 (130)
.+|+.|++|.+
T Consensus 231 r~m~~Lq~l~L 241 (722)
T KOG0532|consen 231 RKMRHLQVLQL 241 (722)
T ss_pred hhhhhheeeee
Confidence 66666666654
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.99 E-value=1e-10 Score=90.94 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=84.9
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
.+|.++..++| .+.++++|+.|+|++|.+ .......+.++..|+.|++++|+++ .+|. .+..+..|++|...+
T Consensus 367 anN~Ltd~c~p-~l~~~~hLKVLhLsyNrL----~~fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 367 ANNHLTDSCFP-VLVNFKHLKVLHLSYNRL----NSFPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGRLHTLRAHS 439 (1081)
T ss_pred hcCcccccchh-hhccccceeeeeeccccc----ccCCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhhhHHHhhcC
Confidence 46777776644 678888888888888888 3333445778888888888888888 6777 777788888888888
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
|.+.. +| .+..+++|+.+|++.|.++...-. ..-..++|++|.+
T Consensus 440 N~l~~--fP-e~~~l~qL~~lDlS~N~L~~~~l~-~~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 440 NQLLS--FP-ELAQLPQLKVLDLSCNNLSEVTLP-EALPSPNLKYLDL 483 (1081)
T ss_pred Cceee--ch-hhhhcCcceEEecccchhhhhhhh-hhCCCcccceeec
Confidence 88877 67 678888888888888877733222 2233356666654
No 16
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=3e-10 Score=61.74 Aligned_cols=60 Identities=32% Similarity=0.429 Sum_probs=32.5
Q ss_pred CCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCC
Q 037597 19 RKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESD 83 (130)
Q Consensus 19 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 83 (130)
|+|++|++++|.+ +...+..+..+++|+++++++|.++ .++++.|.++++|+++++++|+
T Consensus 1 p~L~~L~l~~n~l----~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL----TEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE----SEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC----CccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence 3456666666666 2222234555666666666666665 3332255566666666666554
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.96 E-value=3.7e-11 Score=86.06 Aligned_cols=120 Identities=19% Similarity=0.299 Sum_probs=86.2
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccC-CCCCcccchHhhcCCCCCcEEEc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSY-TNFTGTVINQELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~l~~L~~L~l 79 (130)
|+.|.|+. ++|.+|+.+++|+.||+++|++ +..-|..|+.+..+..+.+.+ |+|+ .+|.+.|.++..++.|.+
T Consensus 74 LdqN~I~~-iP~~aF~~l~~LRrLdLS~N~I----s~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 74 LDQNQISS-IPPGAFKTLHRLRRLDLSKNNI----SFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred eccCCccc-CChhhccchhhhceecccccch----hhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhc
Confidence 35567764 4477777888888888888887 455666777777665555444 7777 555547777777777777
Q ss_pred cCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeee
Q 037597 80 DESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 80 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~ 128 (130)
.-|.+.. .....+..++++..|.+..|.+. .++.+.|..+..++.+.
T Consensus 148 Nan~i~C-ir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 148 NANHINC-IRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLH 194 (498)
T ss_pred Chhhhcc-hhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHh
Confidence 7777777 66667888888888888888888 77776777777766653
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=9e-10 Score=59.82 Aligned_cols=61 Identities=30% Similarity=0.484 Sum_probs=51.5
Q ss_pred CCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCccc
Q 037597 47 PSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVL 109 (130)
Q Consensus 47 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 109 (130)
++|+.+++++|.++ .++...|.++++|+++++++|.+.. ..+..|..+++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence 47899999999998 5554378899999999999999988 5556889999999999999864
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.95 E-value=8.2e-11 Score=89.06 Aligned_cols=118 Identities=14% Similarity=0.251 Sum_probs=72.9
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCC-----------------------CCCCCEEeccCCC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGS-----------------------LPSLKTLYLSYTN 58 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~-----------------------l~~L~~l~l~~~~ 58 (130)
++|.++|.-+|.....|++++||.+...++ ..+|..++. ++.|+.++++.|.
T Consensus 15 sgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-----~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 15 SGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-----EQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNN 89 (1255)
T ss_pred cCCcCCCCcCchhHHHhhheeEEEechhhh-----hhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccc
Confidence 567776554466666666666666655555 345554444 4444555554444
Q ss_pred CC-cccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeee
Q 037597 59 FT-GTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 59 ~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~ 128 (130)
+. .-+|. .+..+.-|..|+++.|++.. .|..+...+++.+|++++|++. .||...|-+++.|-.|.
T Consensus 90 LKnsGiP~-diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 90 LKNSGIPT-DIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLD 156 (1255)
T ss_pred cccCCCCc-hhcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhc
Confidence 43 12344 45556667777777777776 7777777777777888888777 77775566666654444
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=3.1e-10 Score=79.39 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=53.1
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.|+- + .+++.-.|.++.|+++.|.+. .+ ..+..+.+|+.||+++|.++ .+.. |--.+-+.++|.+.
T Consensus 291 LS~N~I~~-i-DESvKL~Pkir~L~lS~N~i~-----~v-~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~KLGNIKtL~La 360 (490)
T KOG1259|consen 291 LSGNLITQ-I-DESVKLAPKLRRLILSQNRIR-----TV-QNLAELPQLQLLDLSGNLLA-ECVG-WHLKLGNIKTLKLA 360 (490)
T ss_pred ccccchhh-h-hhhhhhccceeEEecccccee-----ee-hhhhhcccceEeecccchhH-hhhh-hHhhhcCEeeeehh
Confidence 35566543 2 555556666777777776662 11 23566667777777777665 3333 33334444455555
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccc
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
.|.+.. ...++.+-+|..||+.+|++.
T Consensus 361 ~N~iE~---LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 361 QNKIET---LSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhhHhh---hhhhHhhhhheeccccccchh
Confidence 544443 234455556666666666555
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.84 E-value=2.1e-10 Score=89.26 Aligned_cols=103 Identities=22% Similarity=0.312 Sum_probs=92.6
Q ss_pred CCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCC
Q 037597 18 LRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFT 97 (130)
Q Consensus 18 l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 97 (130)
++.|+.|++.+|.+ ++...+.+..+.+|+.|++++|++. .+|+..+.++..|++|.+++|.++. +|..+..++
T Consensus 358 ~~~Lq~LylanN~L----td~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~ 430 (1081)
T KOG0618|consen 358 HAALQELYLANNHL----TDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTT--LPDTVANLG 430 (1081)
T ss_pred hHHHHHHHHhcCcc----cccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhh
Confidence 46689999999999 6777788899999999999999998 7777578899999999999999998 899999999
Q ss_pred CCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 98 SLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 98 ~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
.|++|...+|.+. ..|+ +..+++|+++++.
T Consensus 431 ~L~tL~ahsN~l~-~fPe--~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLL-SFPE--LAQLPQLKVLDLS 460 (1081)
T ss_pred hhHHHhhcCCcee-echh--hhhcCcceEEecc
Confidence 9999999999999 8886 7889999988763
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.83 E-value=2.9e-08 Score=80.96 Aligned_cols=107 Identities=23% Similarity=0.304 Sum_probs=72.4
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHH
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQ 91 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 91 (130)
|..+ ...+|+.|++.+|.+ ..++..++.+++|+.++++++.....+|. +..+++|+.|.+.+|.... .+|.
T Consensus 605 P~~f-~~~~L~~L~L~~s~l-----~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~-~lp~ 675 (1153)
T PLN03210 605 PSNF-RPENLVKLQMQGSKL-----EKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV-ELPS 675 (1153)
T ss_pred CCcC-CccCCcEEECcCccc-----cccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc-ccch
Confidence 4444 456777788877777 45666677788888888877654335554 6677788888888776544 5777
Q ss_pred hhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 92 SIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 92 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
.++.+++|+.|++++|.....+|. .. ++++|++|.+
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~L 711 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPT-GI-NLKSLYRLNL 711 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeC
Confidence 788888888888887644446776 33 4556655543
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.82 E-value=3.6e-08 Score=80.47 Aligned_cols=105 Identities=22% Similarity=0.223 Sum_probs=71.1
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHH
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQ 91 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 91 (130)
|..++.+++|+.|++++|.. -..+|..+ .+++|+.|++++|.....+|. . ..+++.|++++|.+.. +|.
T Consensus 795 P~si~~L~~L~~L~Ls~C~~----L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-~---~~nL~~L~Ls~n~i~~--iP~ 863 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCIN----LETLPTGI-NLESLESLDLSGCSRLRTFPD-I---STNISDLNLSRTGIEE--VPW 863 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCC----cCeeCCCC-CccccCEEECCCCCccccccc-c---ccccCEeECCCCCCcc--ChH
Confidence 66677777777777776543 24455444 566777777776643333443 1 3468888888888887 788
Q ss_pred hhhcCCCCCEEeccCc-ccccccCcccccCcccceeeee
Q 037597 92 SIASFTSLKYLSMQDS-VLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 92 ~~~~~~~L~~L~l~~n-~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
.+..+++|+.|++.+| ++. .+|. ....++.|+.+.+
T Consensus 864 si~~l~~L~~L~L~~C~~L~-~l~~-~~~~L~~L~~L~l 900 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQ-RVSL-NISKLKHLETVDF 900 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcC-ccCc-ccccccCCCeeec
Confidence 8889999999999874 555 6776 5666666666543
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=9.9e-09 Score=72.31 Aligned_cols=40 Identities=35% Similarity=0.427 Sum_probs=17.7
Q ss_pred CCCCcEEEccCCCCCCc---hhHHhhhcCCCCCEEeccCcccc
Q 037597 71 LTNLEELILDESDLHVS---QLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 71 l~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
.++|++|++++|.+.+. .+...+..+++|++|++++|.+.
T Consensus 192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 34455555555544430 11222334445555555555444
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=1.3e-09 Score=81.32 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=89.5
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|+++. +|+.++.+.++..||.++|++ ..+|+.++.+.+|+.+.+++|.+. .+|. .+. .-.|..|+++.
T Consensus 151 sNNkl~~--lp~~ig~~~tl~~ld~s~nei-----~slpsql~~l~slr~l~vrRn~l~-~lp~-El~-~LpLi~lDfSc 220 (722)
T KOG0532|consen 151 SNNKLTS--LPEEIGLLPTLAHLDVSKNEI-----QSLPSQLGYLTSLRDLNVRRNHLE-DLPE-ELC-SLPLIRLDFSC 220 (722)
T ss_pred ecCcccc--CCcccccchhHHHhhhhhhhh-----hhchHHhhhHHHHHHHHHhhhhhh-hCCH-HHh-CCceeeeeccc
Confidence 5677765 589999999999999999998 678999999999999999999998 7787 676 34589999999
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCc
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHG 115 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 115 (130)
|++.. +|-.|.+|+.|++|-|.+|.+. ..|.
T Consensus 221 Nkis~--iPv~fr~m~~Lq~l~LenNPLq-SPPA 251 (722)
T KOG0532|consen 221 NKISY--LPVDFRKMRHLQVLQLENNPLQ-SPPA 251 (722)
T ss_pred Cceee--cchhhhhhhhheeeeeccCCCC-CChH
Confidence 99998 8999999999999999999998 6665
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.65 E-value=1.8e-08 Score=71.03 Aligned_cols=107 Identities=19% Similarity=0.249 Sum_probs=49.3
Q ss_pred CcEEEcCCcccccccCCchhhhcCCC-CCCCEEeccCCCCCcc----cchHhhcCCCCCcEEEccCCCCCCc---hhHHh
Q 037597 21 LNTLVLGGTEVAMIDGSKALQSIGSL-PSLKTLYLSYTNFTGT----VINQELHNLTNLEELILDESDLHVS---QLLQS 92 (130)
Q Consensus 21 L~~L~l~~n~~~~~~~~~~~~~~~~l-~~L~~l~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~ 92 (130)
|++|++++|.++.-+...+...+..+ ++|+.+++++|.+++. ... .+..+.+|++|.+++|.+.+. .++..
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 55555555555100001122233344 5556666666655521 111 344445566666666665531 12223
Q ss_pred hhcCCCCCEEeccCcccccc----cCcccccCcccceeeee
Q 037597 93 IASFTSLKYLSMQDSVLKGA----LHGQGKLRVSEAFVILI 129 (130)
Q Consensus 93 ~~~~~~L~~L~l~~n~l~~~----~p~~~~~~l~~l~~l~~ 129 (130)
+..+++|++|++++|.+.+. ++. .+..+++|++|.+
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~-~~~~~~~L~~L~l 228 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAE-TLASLKSLEVLNL 228 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHH-HhcccCCCCEEec
Confidence 34445666666666655422 122 3444555655544
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.63 E-value=7.3e-08 Score=75.39 Aligned_cols=55 Identities=24% Similarity=0.415 Sum_probs=26.2
Q ss_pred CCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccc
Q 037597 48 SLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 48 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
+|+.|++++|.++ .+|. .+. .+|+.|++++|.+.. +|..+. ++|+.|++++|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~-~l~--s~L~~L~Ls~N~L~~--LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 242 TIQEMELSINRIT-ELPE-RLP--SALQSLDLFHNKISC--LPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred cccEEECcCCccC-cCCh-hHh--CCCCEEECcCCccCc--cccccC--CCCcEEECCCCccc
Confidence 4455555555544 3443 332 245555555555554 443322 34555555555555
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.59 E-value=3.6e-07 Score=71.60 Aligned_cols=105 Identities=17% Similarity=0.292 Sum_probs=78.2
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
+++.++. +|..+. ++++.|++++|.+ ..+|..+. .+|+.|++++|.++ .+|. .+. .+|+.|.+++
T Consensus 186 ~~~~Lts--LP~~Ip--~~L~~L~Ls~N~L-----tsLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 186 KILGLTT--IPACIP--EQITTLILDNNEL-----KSLPENLQ--GNIKTLYANSNQLT-SIPA-TLP--DTIQEMELSI 250 (754)
T ss_pred CCCCcCc--CCcccc--cCCcEEEecCCCC-----CcCChhhc--cCCCEEECCCCccc-cCCh-hhh--ccccEEECcC
Confidence 4455554 465543 5799999999999 35666553 58999999999998 6776 553 4799999999
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
|.+.. +|..+. .+|+.|++++|++. .+|. .+. ++|++|.+
T Consensus 251 N~L~~--LP~~l~--s~L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~L 290 (754)
T PRK15370 251 NRITE--LPERLP--SALQSLDLFHNKIS-CLPE-NLP--EELRYLSV 290 (754)
T ss_pred CccCc--CChhHh--CCCCEEECcCCccC-cccc-ccC--CCCcEEEC
Confidence 99987 777654 57999999999999 7887 443 35555544
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.57 E-value=5.3e-08 Score=76.24 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=40.2
Q ss_pred CCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCc
Q 037597 47 PSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHG 115 (130)
Q Consensus 47 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 115 (130)
.+|+.|++++|.++ .+|. .. .+|+.|++++|.++. +|..++.++++..+++++|++++..|.
T Consensus 402 s~L~~LdLS~N~Ls-sIP~-l~---~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 402 SELKELMVSGNRLT-SLPM-LP---SGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCCCEEEccCCcCC-CCCc-ch---hhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCchHHH
Confidence 35666666666665 3444 22 245666777777766 677777777777788877777766554
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.53 E-value=1.3e-07 Score=74.07 Aligned_cols=70 Identities=23% Similarity=0.221 Sum_probs=49.1
Q ss_pred CCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceee
Q 037597 48 SLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVI 127 (130)
Q Consensus 48 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l 127 (130)
.|+.|++++|.++ .+|. . ..+|+.|++++|.+.. +|.. ...|+.|++++|+++ .+|. .+++++.+..+
T Consensus 383 ~L~~LdLs~N~Lt-~LP~-l---~s~L~~LdLS~N~Lss--IP~l---~~~L~~L~Ls~NqLt-~LP~-sl~~L~~L~~L 450 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPV-L---PSELKELMVSGNRLTS--LPML---PSGLLSLSVYRNQLT-RLPE-SLIHLSSETTV 450 (788)
T ss_pred ccceEEecCCccc-CCCC-c---ccCCCEEEccCCcCCC--CCcc---hhhhhhhhhccCccc-ccCh-HHhhccCCCeE
Confidence 4666677777666 3444 2 2467778888887776 5643 235677888888888 8888 78888888887
Q ss_pred ee
Q 037597 128 LI 129 (130)
Q Consensus 128 ~~ 129 (130)
.+
T Consensus 451 dL 452 (788)
T PRK15387 451 NL 452 (788)
T ss_pred EC
Confidence 65
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.53 E-value=1e-07 Score=75.76 Aligned_cols=102 Identities=23% Similarity=0.257 Sum_probs=61.5
Q ss_pred CCcEEEcCCcc--cccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCC
Q 037597 20 KLNTLVLGGTE--VAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFT 97 (130)
Q Consensus 20 ~L~~L~l~~n~--~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 97 (130)
.+++|-+..|. + .......|..++.|++||+++|.--+.+|. .+..+-+|+.|+++.+.+.. +|..+++++
T Consensus 546 ~L~tLll~~n~~~l----~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk 618 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWL----LEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGISH--LPSGLGNLK 618 (889)
T ss_pred ccceEEEeecchhh----hhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCccc--cchHHHHHH
Confidence 46666655553 3 223333456667777777776554446666 66666667777777766665 666677777
Q ss_pred CCCEEeccCcccccccCcccccCcccceeeee
Q 037597 98 SLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 98 ~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
.|.+|++..+.....+|. ....+.+|+++.+
T Consensus 619 ~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPG-ILLELQSLRVLRL 649 (889)
T ss_pred hhheeccccccccccccc-hhhhcccccEEEe
Confidence 777777666544434444 5555666666644
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.53 E-value=3e-08 Score=71.47 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=55.9
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHH
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQ 91 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 91 (130)
-..|.++++|+++++++|.+ +..-+..|..+.+++.|.+.+|++. .+....|.++..|+.|+|.+|+++. ..|.
T Consensus 267 ~~cf~~L~~L~~lnlsnN~i----~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~-~~~~ 340 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNKI----TRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITT-VAPG 340 (498)
T ss_pred HHHHhhcccceEeccCCCcc----chhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEE-Eecc
Confidence 34456666666666666666 3444455556666666666666665 3333356666666666666666666 5555
Q ss_pred hhhcCCCCCEEeccCccc
Q 037597 92 SIASFTSLKYLSMQDSVL 109 (130)
Q Consensus 92 ~~~~~~~L~~L~l~~n~l 109 (130)
+|..+.+|..+.+-.|++
T Consensus 341 aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccccceeeeeehccCcc
Confidence 666666666666655543
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=1.5e-08 Score=71.06 Aligned_cols=101 Identities=25% Similarity=0.312 Sum_probs=79.9
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.|.. -+.+..+++|++||+++|.++ .+..---++.+.++|.+++|.++ .+. .++.+.+|..|+++
T Consensus 314 lS~N~i~~---v~nLa~L~~L~~LDLS~N~Ls-----~~~Gwh~KLGNIKtL~La~N~iE-~LS--GL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 314 LSQNRIRT---VQNLAELPQLQLLDLSGNLLA-----ECVGWHLKLGNIKTLKLAQNKIE-TLS--GLRKLYSLVNLDLS 382 (490)
T ss_pred ccccceee---ehhhhhcccceEeecccchhH-----hhhhhHhhhcCEeeeehhhhhHh-hhh--hhHhhhhheecccc
Confidence 47888874 346899999999999999984 22222346788999999999997 444 47888899999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccc
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGA 112 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 112 (130)
+|++....-...+++++.|+++.+.+|++.+.
T Consensus 383 ~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 383 SNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 99988611224789999999999999999943
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.1e-07 Score=69.32 Aligned_cols=89 Identities=28% Similarity=0.370 Sum_probs=45.2
Q ss_pred CCCCCcEEEcCCcccccccCCchhhhcCCCC-CCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhc
Q 037597 17 GLRKLNTLVLGGTEVAMIDGSKALQSIGSLP-SLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIAS 95 (130)
Q Consensus 17 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 95 (130)
.++.++.+++.+|.+ ..+++....+. +|+.+++++|.+. .++. .+..++.|+.|+++.|++.. +|...+.
T Consensus 114 ~~~~l~~L~l~~n~i-----~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l~~--l~~~~~~ 184 (394)
T COG4886 114 ELTNLTSLDLDNNNI-----TDIPPLIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFNDLSD--LPKLLSN 184 (394)
T ss_pred cccceeEEecCCccc-----ccCccccccchhhcccccccccchh-hhhh-hhhccccccccccCCchhhh--hhhhhhh
Confidence 334555555555555 23334444442 5555555555554 3333 35555555555555555555 4444445
Q ss_pred CCCCCEEeccCcccccccCc
Q 037597 96 FTSLKYLSMQDSVLKGALHG 115 (130)
Q Consensus 96 ~~~L~~L~l~~n~l~~~~p~ 115 (130)
.+.+..+++++|++. .+|.
T Consensus 185 ~~~L~~L~ls~N~i~-~l~~ 203 (394)
T COG4886 185 LSNLNNLDLSGNKIS-DLPP 203 (394)
T ss_pred hhhhhheeccCCccc-cCch
Confidence 555555555555555 4444
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.44 E-value=8.6e-08 Score=76.14 Aligned_cols=89 Identities=30% Similarity=0.294 Sum_probs=76.7
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHH
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQ 91 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 91 (130)
.+.|..++.|+.||+++|.- ...+|..++.+.+|++|+++++.+. .+|. .+..+..|.+|++..+.-.. ..|.
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~-~~~~ 636 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLE-SIPG 636 (889)
T ss_pred HHHHhhCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhheeccccccccc-cccc
Confidence 44578899999999998765 5789999999999999999999998 8999 99999999999999887555 3566
Q ss_pred hhhcCCCCCEEeccCc
Q 037597 92 SIASFTSLKYLSMQDS 107 (130)
Q Consensus 92 ~~~~~~~L~~L~l~~n 107 (130)
....+.+|++|.+..-
T Consensus 637 i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRS 652 (889)
T ss_pred hhhhcccccEEEeecc
Confidence 6677999999988654
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=3.1e-09 Score=81.53 Aligned_cols=113 Identities=25% Similarity=0.292 Sum_probs=80.5
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|++.. ...++.-++.++.|+++.|+++ .+ ..+..+++|++||+++|.+. .+|.-...++ +|..|.+++
T Consensus 172 syN~L~~--mD~SLqll~ale~LnLshNk~~-----~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 172 SYNRLVL--MDESLQLLPALESLNLSHNKFT-----KV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred chhhHHh--HHHHHHHHHHhhhhccchhhhh-----hh-HHHHhcccccccccccchhc-cccccchhhh-hheeeeecc
Confidence 4566654 3667777888999999999982 22 37888999999999999987 6665122333 388999999
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCc-ccccCcccceeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHG-QGKLRVSEAFVIL 128 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~l~~l~~l~ 128 (130)
|.+.. ...+.++++|+.||+++|-++ .... ..++.+..|++|.
T Consensus 242 N~l~t---L~gie~LksL~~LDlsyNll~-~hseL~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 242 NALTT---LRGIENLKSLYGLDLSYNLLS-EHSELEPLWSLSSLIVLW 285 (1096)
T ss_pred cHHHh---hhhHHhhhhhhccchhHhhhh-cchhhhHHHHHHHHHHHh
Confidence 98876 356889999999999999877 3222 2344455555443
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=1.5e-07 Score=68.50 Aligned_cols=113 Identities=23% Similarity=0.340 Sum_probs=86.4
Q ss_pred CCCCCCCccCccccCCCC-CCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 2 SANAIDNLVVPKDYRGLR-KLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
.+|.+.. .|+....+. +|+.|++++|.+ ..+|..+..++.|+.|+++.|.++ .++. .......|+.+.++
T Consensus 124 ~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i-----~~l~~~~~~l~~L~~L~l~~N~l~-~l~~-~~~~~~~L~~L~ls 194 (394)
T COG4886 124 DNNNITD--IPPLIGLLKSNLKELDLSDNKI-----ESLPSPLRNLPNLKNLDLSFNDLS-DLPK-LLSNLSNLNNLDLS 194 (394)
T ss_pred CCccccc--Cccccccchhhcccccccccch-----hhhhhhhhccccccccccCCchhh-hhhh-hhhhhhhhhheecc
Confidence 4666665 366666664 899999999998 566677889999999999999998 6666 44477889999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVI 127 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l 127 (130)
+|.+.. +|..+.....|..+.+++|... ..+. .+.+++.+..+
T Consensus 195 ~N~i~~--l~~~~~~~~~L~~l~~~~N~~~-~~~~-~~~~~~~l~~l 237 (394)
T COG4886 195 GNKISD--LPPEIELLSALEELDLSNNSII-ELLS-SLSNLKNLSGL 237 (394)
T ss_pred CCcccc--CchhhhhhhhhhhhhhcCCcce-ecch-hhhhccccccc
Confidence 999998 7777777777999999999544 4444 45555555444
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.41 E-value=6.4e-07 Score=45.38 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=23.9
Q ss_pred CCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccC
Q 037597 73 NLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALH 114 (130)
Q Consensus 73 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 114 (130)
+|++|++++|++++ +|..++.+++|+.|++++|+++ .++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC-CCc
Confidence 46666666666666 5555666777777777766666 443
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.39 E-value=9.6e-07 Score=44.72 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=25.5
Q ss_pred CCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCC
Q 037597 19 RKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60 (130)
Q Consensus 19 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 60 (130)
++|++|++++|++ ..+|+.++.++.|+.+++++|.++
T Consensus 1 ~~L~~L~l~~N~i-----~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQI-----TDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS------SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCC-----cccCchHhCCCCCCEEEecCCCCC
Confidence 4677777877777 356666777777777777777776
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=2.6e-08 Score=62.42 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=47.7
Q ss_pred CCCCcEEEcCCcccccccCCchhhhc-CCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcC
Q 037597 18 LRKLNTLVLGGTEVAMIDGSKALQSI-GSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASF 96 (130)
Q Consensus 18 l~~L~~L~l~~n~~~~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 96 (130)
...|+..++++|.+ ...|+.+ ..++.+++++++.|.++ .+|. .+..++.|+.++++.|++.. .|..+..+
T Consensus 52 ~~el~~i~ls~N~f-----k~fp~kft~kf~t~t~lNl~~neis-dvPe-E~Aam~aLr~lNl~~N~l~~--~p~vi~~L 122 (177)
T KOG4579|consen 52 GYELTKISLSDNGF-----KKFPKKFTIKFPTATTLNLANNEIS-DVPE-ELAAMPALRSLNLRFNPLNA--EPRVIAPL 122 (177)
T ss_pred CceEEEEecccchh-----hhCCHHHhhccchhhhhhcchhhhh-hchH-HHhhhHHhhhcccccCcccc--chHHHHHH
Confidence 34455556666665 2333333 34455666666666665 5555 45556666666666666655 45555555
Q ss_pred CCCCEEeccCcccccccCc
Q 037597 97 TSLKYLSMQDSVLKGALHG 115 (130)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~ 115 (130)
.++..|+..+|.+. ++|.
T Consensus 123 ~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 123 IKLDMLDSPENARA-EIDV 140 (177)
T ss_pred HhHHHhcCCCCccc-cCcH
Confidence 55555555555554 4443
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=1e-07 Score=59.80 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=76.2
Q ss_pred CCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcC-CCCCcEEEccCCCCCCchhHHhhhcCCC
Q 037597 20 KLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHN-LTNLEELILDESDLHVSQLLQSIASFTS 98 (130)
Q Consensus 20 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 98 (130)
.+..++++.|++-.| ...+..+....+|+..++++|.+. .+|. .|.. .+.++.+++.+|.+.+ +|..+..|+.
T Consensus 28 E~h~ldLssc~lm~i--~davy~l~~~~el~~i~ls~N~fk-~fp~-kft~kf~t~t~lNl~~neisd--vPeE~Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYI--ADAVYMLSKGYELTKISLSDNGFK-KFPK-KFTIKFPTATTLNLANNEISD--VPEELAAMPA 101 (177)
T ss_pred HhhhcccccchhhHH--HHHHHHHhCCceEEEEecccchhh-hCCH-HHhhccchhhhhhcchhhhhh--chHHHhhhHH
Confidence 356778888887111 123345667788999999999998 6777 5643 4578999999999998 8999999999
Q ss_pred CCEEeccCcccccccCcccccCcccceee
Q 037597 99 LKYLSMQDSVLKGALHGQGKLRVSEAFVI 127 (130)
Q Consensus 99 L~~L~l~~n~l~~~~p~~~~~~l~~l~~l 127 (130)
|+.+++++|++. ..|. .+..+.++-.|
T Consensus 102 Lr~lNl~~N~l~-~~p~-vi~~L~~l~~L 128 (177)
T KOG4579|consen 102 LRSLNLRFNPLN-AEPR-VIAPLIKLDML 128 (177)
T ss_pred hhhcccccCccc-cchH-HHHHHHhHHHh
Confidence 999999999998 7777 55556655444
No 42
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.17 E-value=2.9e-06 Score=56.42 Aligned_cols=65 Identities=29% Similarity=0.387 Sum_probs=27.3
Q ss_pred cCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhH--HhhhcCCCCCEEeccCcccc
Q 037597 43 IGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLL--QSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 43 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l~~n~l~ 110 (130)
+..++.|.+|.+.+|.++...|. --.-++.+..|.+.+|.+.. +. ..+..++.|+.|.+-+|++.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~--l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQE--LGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhh--hhhcchhccCCccceeeecCCchh
Confidence 33444455555555555432222 11222344455555544443 11 12334444555544444444
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.11 E-value=1e-05 Score=53.80 Aligned_cols=96 Identities=24% Similarity=0.301 Sum_probs=70.5
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccch-HhhcCCCCCcEEEc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVIN-QELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l 79 (130)
|++|.+.. -+.|.+++.|.+|.+++|.++.| .|.--..++.|..|.+.+|.+. .+.+ +.+..|+.|+.|.+
T Consensus 49 LtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I----~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 49 LTDNDLRK---LDNLPHLPRLHTLLLNNNRITRI----DPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccccchhh---cccCCCccccceEEecCCcceee----ccchhhhccccceEEecCcchh-hhhhcchhccCCccceeee
Confidence 35666654 34788999999999999999433 3333345678999999999886 2222 24778899999999
Q ss_pred cCCCCCCchhHH----hhhcCCCCCEEeccC
Q 037597 80 DESDLHVSQLLQ----SIASFTSLKYLSMQD 106 (130)
Q Consensus 80 ~~n~~~~~~~~~----~~~~~~~L~~L~l~~ 106 (130)
-+|++.. .+. .+..+++++.||++.
T Consensus 121 l~Npv~~--k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEH--KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhc--ccCceeEEEEecCcceEeehhh
Confidence 9998876 221 467889999999875
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=8.2e-07 Score=65.37 Aligned_cols=86 Identities=28% Similarity=0.348 Sum_probs=62.8
Q ss_pred ccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhh
Q 037597 14 DYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSI 93 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 93 (130)
.+..+.+++++++.+|.+ ..+...+..+.+|+.|++++|.++ .+.. +..+..|+.|++.+|.+.. ...+
T Consensus 90 ~l~~~~~l~~l~l~~n~i-----~~i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~---~~~~ 158 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKI-----EKIENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISD---ISGL 158 (414)
T ss_pred ccccccceeeeeccccch-----hhcccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchh---ccCC
Confidence 366778888888888888 233333667888888888888887 3333 5556668888888888877 3455
Q ss_pred hcCCCCCEEeccCcccc
Q 037597 94 ASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 94 ~~~~~L~~L~l~~n~l~ 110 (130)
..++.++.+++++|.+.
T Consensus 159 ~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRIV 175 (414)
T ss_pred ccchhhhcccCCcchhh
Confidence 66788888888888777
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.5e-06 Score=63.52 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=65.0
Q ss_pred ccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhh
Q 037597 14 DYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSI 93 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 93 (130)
....+++++.|+++.|-+..+ ..+-.....+++|+.|+++.|++.....++.-..+++++.|.++.|.++...+-...
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw--~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~ 218 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNW--FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWIL 218 (505)
T ss_pred hhhhCCcceeecchhhhHHhH--HHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHH
Confidence 456789999999999988311 123455678999999999999987333331223567899999999988863333445
Q ss_pred hcCCCCCEEeccCc
Q 037597 94 ASFTSLKYLSMQDS 107 (130)
Q Consensus 94 ~~~~~L~~L~l~~n 107 (130)
..+|++..|+++.|
T Consensus 219 ~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 219 LTFPSLEVLYLEAN 232 (505)
T ss_pred HhCCcHHHhhhhcc
Confidence 67777777777776
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.98 E-value=5.2e-06 Score=59.12 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=73.9
Q ss_pred CCCCCCCCccCccc----cCCCCCCcEEEcCCcccccccCCch---------hhhcCCCCCCCEEeccCCCCCcccch--
Q 037597 1 MSANAIDNLVVPKD----YRGLRKLNTLVLGGTEVAMIDGSKA---------LQSIGSLPSLKTLYLSYTNFTGTVIN-- 65 (130)
Q Consensus 1 l~~n~l~~~~~p~~----~~~l~~L~~L~l~~n~~~~~~~~~~---------~~~~~~l~~L~~l~l~~~~~~~~~~~-- 65 (130)
||.|.+.... ++. +.....|++|+|++|.+..++...+ ......-+.|+++...+|++.. .+.
T Consensus 99 LSDNA~G~~g-~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen-~ga~~ 176 (382)
T KOG1909|consen 99 LSDNAFGPKG-IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN-GGATA 176 (382)
T ss_pred ccccccCccc-hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc-ccHHH
Confidence 4556664332 222 2345677778888877743322221 2224455677888887777752 111
Q ss_pred --HhhcCCCCCcEEEccCCCCCCc---hhHHhhhcCCCCCEEeccCcccccc----cCcccccCcccceeeee
Q 037597 66 --QELHNLTNLEELILDESDLHVS---QLLQSIASFTSLKYLSMQDSVLKGA----LHGQGKLRVSEAFVILI 129 (130)
Q Consensus 66 --~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~~l~~l~~l~~ 129 (130)
..++..+.|+.+.+..|.+..+ .+...+..+++|+.||++.|-++.. +. ..++.|+.|+++.+
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La-kaL~s~~~L~El~l 248 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA-KALSSWPHLRELNL 248 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH-HHhcccchheeecc
Confidence 2466667788888887776541 2334567888888888888866511 22 25566667777654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.89 E-value=3.6e-07 Score=70.57 Aligned_cols=97 Identities=26% Similarity=0.176 Sum_probs=73.2
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.+.. -+.+..+++|++||+++|.+ ..+|.--..-.+|+.|.+++|.++ ++- .+-++.+|..|+++
T Consensus 194 LshNk~~~---v~~Lr~l~~LkhLDlsyN~L-----~~vp~l~~~gc~L~~L~lrnN~l~-tL~--gie~LksL~~LDls 262 (1096)
T KOG1859|consen 194 LSHNKFTK---VDNLRRLPKLKHLDLSYNCL-----RHVPQLSMVGCKLQLLNLRNNALT-TLR--GIENLKSLYGLDLS 262 (1096)
T ss_pred cchhhhhh---hHHHHhcccccccccccchh-----ccccccchhhhhheeeeecccHHH-hhh--hHHhhhhhhccchh
Confidence 57888876 23889999999999999999 345432222345999999999987 443 36778889999999
Q ss_pred CCCCCCchhH--HhhhcCCCCCEEeccCcccc
Q 037597 81 ESDLHVSQLL--QSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 81 ~n~~~~~~~~--~~~~~~~~L~~L~l~~n~l~ 110 (130)
+|-+.+ .. ..++.+.+|+.|.+.+|++-
T Consensus 263 yNll~~--hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 263 YNLLSE--HSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred Hhhhhc--chhhhHHHHHHHHHHHhhcCCccc
Confidence 997766 22 24667778888999988776
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=4.6e-06 Score=61.01 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=33.0
Q ss_pred CCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHh-----hhcCCCCCEEeccCcccccccCc
Q 037597 46 LPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQS-----IASFTSLKYLSMQDSVLKGALHG 115 (130)
Q Consensus 46 l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~p~ 115 (130)
+..|+.||+++|.+.....-.....++.|..|+++.+.+..-..|+. ...+++|+.|++..|+++ .++.
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~s 318 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRS 318 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccc
Confidence 34455555555554311110133444555555555555443111111 234566777777777775 5554
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.60 E-value=1.9e-05 Score=58.28 Aligned_cols=99 Identities=24% Similarity=0.317 Sum_probs=73.7
Q ss_pred CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcC
Q 037597 17 GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASF 96 (130)
Q Consensus 17 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 96 (130)
.+..+..+.+..|.+ ...-..+..+.+|+.+++.+|.++ .+.. .+..+.+|++|++++|.+.. -..+..+
T Consensus 70 ~l~~l~~l~l~~n~i-----~~~~~~l~~~~~l~~l~l~~n~i~-~i~~-~l~~~~~L~~L~ls~N~I~~---i~~l~~l 139 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLI-----AKILNHLSKLKSLEALDLYDNKIE-KIEN-LLSSLVNLQVLDLSFNKITK---LEGLSTL 139 (414)
T ss_pred HhHhHHhhccchhhh-----hhhhcccccccceeeeeccccchh-hccc-chhhhhcchheecccccccc---ccchhhc
Confidence 345566666777777 233345788999999999999998 3333 36678899999999999998 3457778
Q ss_pred CCCCEEeccCcccccccCcccccCcccceeee
Q 037597 97 TSLKYLSMQDSVLKGALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~ 128 (130)
+.|+.|++.+|.++ .+.. +..++.|+.+.
T Consensus 140 ~~L~~L~l~~N~i~-~~~~--~~~l~~L~~l~ 168 (414)
T KOG0531|consen 140 TLLKELNLSGNLIS-DISG--LESLKSLKLLD 168 (414)
T ss_pred cchhhheeccCcch-hccC--Cccchhhhccc
Confidence 88999999999998 6655 44455555554
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=0.00022 Score=55.95 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=54.1
Q ss_pred CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcC
Q 037597 17 GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASF 96 (130)
Q Consensus 17 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 96 (130)
.+|+|+.|.+.+-.+. .+....-...+++|..||++++.++ .+ . .+..+++|+.|.+.+=.+.....-..+.++
T Consensus 146 ~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~-GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNIS-NL-S-GISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCceec---chhHHHHhhccCccceeecCCCCcc-Cc-H-HHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 4678888887776651 2233344557788888888888876 33 3 566777777777766555541122356677
Q ss_pred CCCCEEeccCc
Q 037597 97 TSLKYLSMQDS 107 (130)
Q Consensus 97 ~~L~~L~l~~n 107 (130)
+.|++||++..
T Consensus 220 ~~L~vLDIS~~ 230 (699)
T KOG3665|consen 220 KKLRVLDISRD 230 (699)
T ss_pred cCCCeeecccc
Confidence 77777777743
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.47 E-value=6e-05 Score=51.80 Aligned_cols=42 Identities=29% Similarity=0.326 Sum_probs=18.8
Q ss_pred cCCCCCCCEEeccCC--CCCcccchHhhcCCCCCcEEEccCCCCC
Q 037597 43 IGSLPSLKTLYLSYT--NFTGTVINQELHNLTNLEELILDESDLH 85 (130)
Q Consensus 43 ~~~l~~L~~l~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 85 (130)
+..++.|+.|.++.| .+.+.++. ....+++|++++++.|.+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccc
Confidence 334445555555555 33322322 2233355555555555544
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=0.00013 Score=57.06 Aligned_cols=104 Identities=23% Similarity=0.351 Sum_probs=73.8
Q ss_pred CCCcEEEcCCcccccccCCchhhhcC-CCCCCCEEeccCCCCCc-ccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcC
Q 037597 19 RKLNTLVLGGTEVAMIDGSKALQSIG-SLPSLKTLYLSYTNFTG-TVINQELHNLTNLEELILDESDLHVSQLLQSIASF 96 (130)
Q Consensus 19 ~~L~~L~l~~n~~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 96 (130)
.+|++|++++.+.. ...-+..++ -+|+|+.|.+.+-.+.. .... ...+.++|..|+++++.++. + ..+.++
T Consensus 122 ~nL~~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~n--l-~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNISN--L-SGISRL 194 (699)
T ss_pred HhhhhcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHH-HhhccCccceeecCCCCccC--c-HHHhcc
Confidence 46888999887652 222333444 57999999999877652 2223 45678899999999999998 3 778899
Q ss_pred CCCCEEeccCcccccccCc-ccccCcccceeeeeC
Q 037597 97 TSLKYLSMQDSVLKGALHG-QGKLRVSEAFVILIR 130 (130)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~-~~~~~l~~l~~l~~~ 130 (130)
++|+.|.+.+=.+. .-.. ..+.+|++|++|++.
T Consensus 195 knLq~L~mrnLe~e-~~~~l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFE-SYQDLIDLFNLKKLRVLDIS 228 (699)
T ss_pred ccHHHHhccCCCCC-chhhHHHHhcccCCCeeecc
Confidence 99999988765554 2121 256778999988763
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.26 E-value=0.00011 Score=52.48 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=18.5
Q ss_pred CCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCC
Q 037597 16 RGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60 (130)
Q Consensus 16 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 60 (130)
.+.++|+.||+.+|.++.=|+..+...++.+++|+.+++.+|.++
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 344444455554444421111112233444444444444444443
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00064 Score=46.85 Aligned_cols=88 Identities=26% Similarity=0.229 Sum_probs=60.1
Q ss_pred ccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCc--ccchHhhcCCCCCcEEEccCCCCCCc--hh
Q 037597 14 DYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTG--TVINQELHNLTNLEELILDESDLHVS--QL 89 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~--~~ 89 (130)
.+..+++|++|.++.|.+.. ...++...-.++.|+++.+++|++.. .+. .+..+.+|..|.+.+|..... --
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~--~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~~l~nL~~Ldl~n~~~~~l~dyr 135 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRV--SGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLKELENLKSLDLFNCSVTNLDDYR 135 (260)
T ss_pred cCCCcchhhhhcccCCcccc--cccceehhhhCCceeEEeecCCccccccccc--hhhhhcchhhhhcccCCccccccHH
Confidence 45578899999999994310 34444445566999999999999872 222 255667788888888865430 12
Q ss_pred HHhhhcCCCCCEEecc
Q 037597 90 LQSIASFTSLKYLSMQ 105 (130)
Q Consensus 90 ~~~~~~~~~L~~L~l~ 105 (130)
-..+..+++|.+|+..
T Consensus 136 e~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 136 EKVFLLLPSLKYLDGC 151 (260)
T ss_pred HHHHHHhhhhcccccc
Confidence 2356678888888754
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0012 Score=46.83 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=31.0
Q ss_pred CcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCc-----ccccCcccceee
Q 037597 74 LEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHG-----QGKLRVSEAFVI 127 (130)
Q Consensus 74 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-----~~~~~l~~l~~l 127 (130)
+..|+++.+++..|.-...+.++++++.+.+.+|++..++-. .-+++++.+++|
T Consensus 226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred chhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 334555555555433344566777888888877777644433 234555555554
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.77 E-value=0.0074 Score=44.71 Aligned_cols=13 Identities=38% Similarity=0.273 Sum_probs=7.1
Q ss_pred CCCEEeccCcccc
Q 037597 98 SLKYLSMQDSVLK 110 (130)
Q Consensus 98 ~L~~L~l~~n~l~ 110 (130)
+|++|++.+|...
T Consensus 157 SLk~L~Is~c~~i 169 (426)
T PRK15386 157 SLKTLSLTGCSNI 169 (426)
T ss_pred cccEEEecCCCcc
Confidence 4566666655433
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.0009 Score=47.48 Aligned_cols=84 Identities=26% Similarity=0.354 Sum_probs=47.2
Q ss_pred CCCcEEEcCCcccccccCCc--hhhhcCCCCCCCEEeccCCCCCcccchHhh-cCCCCCcEEEccCCCCCCchhHHhhhc
Q 037597 19 RKLNTLVLGGTEVAMIDGSK--ALQSIGSLPSLKTLYLSYTNFTGTVINQEL-HNLTNLEELILDESDLHVSQLLQSIAS 95 (130)
Q Consensus 19 ~~L~~L~l~~n~~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~ 95 (130)
..++.+|+..|.+ +++ +...+..+++|++|+++.|.+...+.. . ....+|+.+-+.+..+.....-..+..
T Consensus 71 ~~v~elDL~~N~i----SdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 71 TDVKELDLTGNLI----SDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred hhhhhhhcccchh----ccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 4566667777776 232 333455677777777777766522222 2 133456666666665554223334556
Q ss_pred CCCCCEEeccCcc
Q 037597 96 FTSLKYLSMQDSV 108 (130)
Q Consensus 96 ~~~L~~L~l~~n~ 108 (130)
++.+++++++.|.
T Consensus 145 lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 145 LPKVTELHMSDNS 157 (418)
T ss_pred chhhhhhhhccch
Confidence 6666667666663
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.70 E-value=0.0014 Score=46.07 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=60.7
Q ss_pred CCCCCCCCccCcccc----CCCCCCcEEEcCCcccccccCCchhhh---------cCCCCCCCEEeccCCCCCcccch--
Q 037597 1 MSANAIDNLVVPKDY----RGLRKLNTLVLGGTEVAMIDGSKALQS---------IGSLPSLKTLYLSYTNFTGTVIN-- 65 (130)
Q Consensus 1 l~~n~l~~~~~p~~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~---------~~~l~~L~~l~l~~~~~~~~~~~-- 65 (130)
||.|.+.... |+.+ +.-+.|.+|.+++|.+..|+++.+... ...-+.|++....+|++. ..+.
T Consensus 99 LSDNAfg~~~-~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~ 176 (388)
T COG5238 99 LSDNAFGSEF-PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKEL 176 (388)
T ss_pred ccccccCccc-chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHH
Confidence 4566665544 3333 344667777777777744433333322 223456777777777765 1111
Q ss_pred --HhhcCCCCCcEEEccCCCCCCc----hhHHhhhcCCCCCEEeccCcccc
Q 037597 66 --QELHNLTNLEELILDESDLHVS----QLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 66 --~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
..+..-..|+.+.+..|.+..+ ..-..+..+.+|+.||++.|-++
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 0122334677788887776541 01123456788999999988766
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.59 E-value=0.0011 Score=28.18 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=16.2
Q ss_pred CCCEEeccCcccccccCcccccCc
Q 037597 98 SLKYLSMQDSVLKGALHGQGKLRV 121 (130)
Q Consensus 98 ~L~~L~l~~n~l~~~~p~~~~~~l 121 (130)
+|++|++++|+++ .+|. .|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~-~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPS-SFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGT-TTTT-
T ss_pred CccEEECCCCcCE-eCCh-hhcCC
Confidence 4678888888888 8888 56553
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.00014 Score=50.92 Aligned_cols=64 Identities=28% Similarity=0.290 Sum_probs=30.6
Q ss_pred CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCC
Q 037597 17 GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHV 86 (130)
Q Consensus 17 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 86 (130)
+|+.|+.|.|+-|.+ +. -..+..++.|+.|+++.|.|.....-..++++++|+.|++..|+..+
T Consensus 39 kMp~lEVLsLSvNkI----ss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKI----SS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred hcccceeEEeecccc----cc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 455555555555555 11 12344455555555555555422111134455555666665555443
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00025 Score=49.76 Aligned_cols=84 Identities=24% Similarity=0.315 Sum_probs=66.1
Q ss_pred CCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHH--hhhc
Q 037597 18 LRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQ--SIAS 95 (130)
Q Consensus 18 l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~ 95 (130)
+.+.++|+.-+|.+++| ....+++.|++|.++-|+++ .+.+ +..|+.|++|.|..|.+.+ +.+ -+.+
T Consensus 18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~s--ldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIES--LDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCccHH------HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhccccc--HHHHHHHhc
Confidence 55677788888888322 34568999999999999998 5554 8889999999999999887 444 3578
Q ss_pred CCCCCEEeccCcccccc
Q 037597 96 FTSLKYLSMQDSVLKGA 112 (130)
Q Consensus 96 ~~~L~~L~l~~n~l~~~ 112 (130)
+++|+.|-+..|+=.|.
T Consensus 87 lpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGE 103 (388)
T ss_pred CchhhhHhhccCCcccc
Confidence 99999998888865544
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.38 E-value=0.017 Score=35.18 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=13.5
Q ss_pred cCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 43 IGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 43 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+.....++.+.+..+ +. .++...+..+..++.+.+.
T Consensus 31 F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET
T ss_pred ccccccccccccccc-cc-ccceeeeeccccccccccc
Confidence 334445555555443 33 2222234444445555554
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.33 E-value=0.019 Score=35.01 Aligned_cols=101 Identities=12% Similarity=0.201 Sum_probs=53.3
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHH
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQ 91 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 91 (130)
...|...++++.+.+..+ +. ..-...+.....++.+.+.. .+. .++...+..+.+++.+.+..+ +.. .-..
T Consensus 28 ~~~F~~~~~l~~i~~~~~-~~----~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~~-i~~~ 98 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPNN-LT----SIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-ITE-IGSS 98 (129)
T ss_dssp TTTTTT-TT-SEEEESST-TS----CE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--BE-EHTT
T ss_pred hhhccccccccccccccc-cc----ccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-ccE-Echh
Confidence 456777888999998875 52 22234566777899999976 443 344436778899999999765 554 2334
Q ss_pred hhhcCCCCCEEeccCcccccccCcccccCcccc
Q 037597 92 SIASFTSLKYLSMQDSVLKGALHGQGKLRVSEA 124 (130)
Q Consensus 92 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l 124 (130)
.+.++ .++.+.+.. .+. .++...|.++.+|
T Consensus 99 ~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 99 SFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred hhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 56676 889888875 444 4555578777665
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.07 E-value=0.018 Score=42.78 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=36.7
Q ss_pred CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCC-CCCC
Q 037597 17 GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDES-DLHV 86 (130)
Q Consensus 17 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~ 86 (130)
.+.++++|++++|.+ ..+| .-+.+|+.|.+.++.-...+|. .+ ..+|+.|.+++| .+..
T Consensus 50 ~~~~l~~L~Is~c~L-----~sLP---~LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 50 EARASGRLYIKDCDI-----ESLP---VLPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISG 109 (426)
T ss_pred HhcCCCEEEeCCCCC-----cccC---CCCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCcccccc
Confidence 457788888888877 3445 2344688888876432225554 33 246777888777 3443
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0007 Score=48.04 Aligned_cols=44 Identities=18% Similarity=0.083 Sum_probs=22.7
Q ss_pred ccCCCCCCcEEEcCCcc-cccccCCchhhhcCCCCCCCEEeccCCCCC
Q 037597 14 DYRGLRKLNTLVLGGTE-VAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 60 (130)
.+..-..|+.++++++. ++ ...+---+..++.|..|+++++...
T Consensus 229 ~iAkN~~L~~lnlsm~sG~t---~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 229 TIAKNSNLVRLNLSMCSGFT---ENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHhccccceeeccccccccc---hhHHHHHHHhhhhHhhcCchHhhcc
Confidence 44455666667666643 21 0011112445666677777766554
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0059 Score=43.51 Aligned_cols=65 Identities=28% Similarity=0.267 Sum_probs=38.4
Q ss_pred cCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCC-CCcccch-HhhcCCCCCcEEEccCCCC
Q 037597 15 YRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTN-FTGTVIN-QELHNLTNLEELILDESDL 84 (130)
Q Consensus 15 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~-~~~~~l~~L~~L~l~~n~~ 84 (130)
++.+.+|+-|.+.++++ ++.+...+.+=..|+.++++++. ++ .... --+..|+.|..|+++.|.+
T Consensus 206 Ls~C~kLk~lSlEg~~L----dD~I~~~iAkN~~L~~lnlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRL----DDPIVNTIAKNSNLVRLNLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHHhhhhcccccccc----CcHHHHHHhccccceeeccccccccc-hhHHHHHHHhhhhHhhcCchHhhc
Confidence 34456677777777777 56666667777777777777653 33 1111 0234555556666655543
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.24 E-value=0.015 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=6.0
Q ss_pred CCCEEeccCcccc
Q 037597 98 SLKYLSMQDSVLK 110 (130)
Q Consensus 98 ~L~~L~l~~n~l~ 110 (130)
+|+.|++++|++.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666655
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.41 E-value=0.037 Score=24.17 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=12.4
Q ss_pred CCCCEEeccCcccccccCc
Q 037597 97 TSLKYLSMQDSVLKGALHG 115 (130)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~ 115 (130)
++|+.|++.+|.++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 56677777777777 6665
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.41 E-value=0.037 Score=24.17 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=12.4
Q ss_pred CCCCEEeccCcccccccCc
Q 037597 97 TSLKYLSMQDSVLKGALHG 115 (130)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~ 115 (130)
++|+.|++.+|.++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 56677777777777 6665
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.99 E-value=0.22 Score=35.37 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=51.5
Q ss_pred cCCCCCCcEEEcCCcccccccCCch----hhhcCCCCCCCEEeccCCCCC---cccch------HhhcCCCCCcEEEccC
Q 037597 15 YRGLRKLNTLVLGGTEVAMIDGSKA----LQSIGSLPSLKTLYLSYTNFT---GTVIN------QELHNLTNLEELILDE 81 (130)
Q Consensus 15 ~~~l~~L~~L~l~~n~~~~~~~~~~----~~~~~~l~~L~~l~l~~~~~~---~~~~~------~~~~~l~~L~~L~l~~ 81 (130)
+..+..++.+++++|.+ +... ...+..-.+|+..+++.--.. ..+++ ..+-.|++++..+++.
T Consensus 26 l~~~d~~~evdLSGNti----gtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 26 LEMMDELVEVDLSGNTI----GTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHhhcceeEEeccCCcc----cHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 33466788888888887 3332 223444556666665543211 11222 1355667777777777
Q ss_pred CCCCCchhHH----hhhcCCCCCEEeccCcccc
Q 037597 82 SDLHVSQLLQ----SIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 82 n~~~~~~~~~----~~~~~~~L~~L~l~~n~l~ 110 (130)
|.+.. ..|+ .+.+-..+.+|.+++|.+.
T Consensus 102 NAfg~-~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 102 NAFGS-EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cccCc-ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 76655 3333 3445566777777766654
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.43 E-value=0.0018 Score=44.48 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=52.4
Q ss_pred ccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhh
Q 037597 14 DYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSI 93 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 93 (130)
++..+...+.||++.|++ ..+...++.++.+..++++.|.+. .+|. .+.+...+.++.+..|..+. .|..+
T Consensus 37 ei~~~kr~tvld~~s~r~-----vn~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~~--~p~s~ 107 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRL-----VNLGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHSQ--QPKSQ 107 (326)
T ss_pred hhhccceeeeehhhhhHH-----HhhccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchhh--CCccc
Confidence 344556666777777765 234445555666667777766665 5555 55555555556666555554 56666
Q ss_pred hcCCCCCEEeccCcccc
Q 037597 94 ASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 94 ~~~~~L~~L~l~~n~l~ 110 (130)
+..+.++.++.-.|.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 66666666666555443
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.15 E-value=0.0022 Score=44.07 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=63.8
Q ss_pred hcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCc
Q 037597 42 SIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRV 121 (130)
Q Consensus 42 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l 121 (130)
.+-.+...+.+|++.|++- .+.. .+.-++.+..++++.|++.. +|..++....++.++..+|..+ ..|. +++.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~-n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~ 110 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGK-NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPK-SQKKE 110 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhcc-chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCc-ccccc
Confidence 4556677889999888875 3333 45556678889999999887 8999999999999999999998 8888 88888
Q ss_pred ccceeee
Q 037597 122 SEAFVIL 128 (130)
Q Consensus 122 ~~l~~l~ 128 (130)
+.+++..
T Consensus 111 ~~~k~~e 117 (326)
T KOG0473|consen 111 PHPKKNE 117 (326)
T ss_pred CCcchhh
Confidence 7776653
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.05 E-value=0.55 Score=34.84 Aligned_cols=92 Identities=24% Similarity=0.200 Sum_probs=50.1
Q ss_pred cCCCCCCcEEEcCCc-c-cccccCCchhhhcCCCCCCCEEeccCCC-CCcccchHhh-cCCCCCcEEEccCCC-CCCchh
Q 037597 15 YRGLRKLNTLVLGGT-E-VAMIDGSKALQSIGSLPSLKTLYLSYTN-FTGTVINQEL-HNLTNLEELILDESD-LHVSQL 89 (130)
Q Consensus 15 ~~~l~~L~~L~l~~n-~-~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~-~~l~~L~~L~l~~n~-~~~~~~ 89 (130)
....+.|+.|+++++ . .... ..........+..|+.++++++. ++...-. .+ ..++.|+.|.+.++. +++..+
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~-~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLS-PLLLLLLLSICRKLKSLDLSGCGLVTDIGLS-ALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HhhCchhheecccCcccccccc-hhHhhhhhhhcCCcCccchhhhhccCchhHH-HHHhhCCCcceEccCCCCccchhHH
Confidence 345677777777762 1 1000 00011223345677777777776 4422222 22 236778888877666 555223
Q ss_pred HHhhhcCCCCCEEeccCcc
Q 037597 90 LQSIASFTSLKYLSMQDSV 108 (130)
Q Consensus 90 ~~~~~~~~~L~~L~l~~n~ 108 (130)
-.....++.|++|+++.+.
T Consensus 288 ~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHHHhcCcccEEeeecCc
Confidence 3344567778888887653
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.99 E-value=0.21 Score=21.24 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=4.1
Q ss_pred CCCEEeccCCCC
Q 037597 48 SLKTLYLSYTNF 59 (130)
Q Consensus 48 ~L~~l~l~~~~~ 59 (130)
+|+.|++++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 334444444443
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.84 E-value=0.4 Score=21.20 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=14.2
Q ss_pred CCCCEEeccCcccccccCc
Q 037597 97 TSLKYLSMQDSVLKGALHG 115 (130)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~ 115 (130)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 45788888888888 7776
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.90 E-value=0.41 Score=32.34 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=48.0
Q ss_pred CCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCc-ccchHhhc-CCCCCcEEEccCCC-CCCchhHHhhh
Q 037597 18 LRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTG-TVINQELH-NLTNLEELILDESD-LHVSQLLQSIA 94 (130)
Q Consensus 18 l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~-~l~~L~~L~l~~n~-~~~~~~~~~~~ 94 (130)
-..++.+|.+++.+ ...=-..+..++.++.+.+.++.--+ ..-. -+. ..++|+.|.+++|. |++ .-...+.
T Consensus 100 ~~~IeaVDAsds~I----~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~rIT~-~GL~~L~ 173 (221)
T KOG3864|consen 100 NVKIEAVDASDSSI----MYEGLEHLRDLRSIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCPRITD-GGLACLL 173 (221)
T ss_pred cceEEEEecCCchH----HHHHHHHHhccchhhhheeccccchhhHHHH-HhcccccchheeeccCCCeech-hHHHHHH
Confidence 34577777777776 23333456667777777766664221 1111 122 23578888888775 555 3334566
Q ss_pred cCCCCCEEeccC
Q 037597 95 SFTSLKYLSMQD 106 (130)
Q Consensus 95 ~~~~L~~L~l~~ 106 (130)
.+++|+.|++.+
T Consensus 174 ~lknLr~L~l~~ 185 (221)
T KOG3864|consen 174 KLKNLRRLHLYD 185 (221)
T ss_pred HhhhhHHHHhcC
Confidence 777777776643
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.02 E-value=0.25 Score=33.35 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=43.3
Q ss_pred CCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCC-CCchhHHhhh-cCCCCCEEeccCc-ccc
Q 037597 46 LPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDL-HVSQLLQSIA-SFTSLKYLSMQDS-VLK 110 (130)
Q Consensus 46 l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~-~~~~L~~L~l~~n-~l~ 110 (130)
-..++.+|.++..+..+--. .+..++.++.+.+.++.- .++-+ +.++ -.++|+.|++++| .|+
T Consensus 100 ~~~IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred cceEEEEecCCchHHHHHHH-HHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeec
Confidence 34578888888887644444 688888999999988863 33111 2232 4578999999987 454
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.91 E-value=1 Score=33.40 Aligned_cols=109 Identities=20% Similarity=0.094 Sum_probs=66.0
Q ss_pred CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCC-CCCcccc---hHhhcCCCCCcEEEccCCC-CCCchhHH
Q 037597 17 GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYT-NFTGTVI---NQELHNLTNLEELILDESD-LHVSQLLQ 91 (130)
Q Consensus 17 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~~~---~~~~~~l~~L~~L~l~~n~-~~~~~~~~ 91 (130)
..+.++.+.+..+.- |......+.....+.|+.+++.++ ......+ ......++.|+.++++.+. +++ ..-.
T Consensus 186 ~~~~L~~l~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSK--ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLS 262 (482)
T ss_pred hCchhhHhhhccccc--CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHH
Confidence 367788888877643 001124456678899999999873 2111111 1123456789999999888 676 4444
Q ss_pred hhh-cCCCCCEEeccCcc-cccc-cCcccccCcccceeeee
Q 037597 92 SIA-SFTSLKYLSMQDSV-LKGA-LHGQGKLRVSEAFVILI 129 (130)
Q Consensus 92 ~~~-~~~~L~~L~l~~n~-l~~~-~p~~~~~~l~~l~~l~~ 129 (130)
.+. .+++|+.|.+.++. ++.. +- .....++.|+++.+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~-~i~~~~~~L~~L~l 302 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLV-SIAERCPSLRELDL 302 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHH-HHHHhcCcccEEee
Confidence 444 48999999966654 3311 11 23455666777765
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.49 E-value=1.9 Score=18.96 Aligned_cols=14 Identities=29% Similarity=0.339 Sum_probs=8.0
Q ss_pred CCCCEEeccCCCCC
Q 037597 47 PSLKTLYLSYTNFT 60 (130)
Q Consensus 47 ~~L~~l~l~~~~~~ 60 (130)
..|+.|+++.|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34556666666554
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.63 E-value=1.9 Score=19.05 Aligned_cols=13 Identities=38% Similarity=0.437 Sum_probs=7.3
Q ss_pred CCCEEeccCCCCC
Q 037597 48 SLKTLYLSYTNFT 60 (130)
Q Consensus 48 ~L~~l~l~~~~~~ 60 (130)
+|+.|++++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555666665554
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.23 E-value=2.7 Score=32.56 Aligned_cols=82 Identities=27% Similarity=0.349 Sum_probs=50.0
Q ss_pred CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCC--CCCcccchHhhcCC--CCCcEEEccCCCCCCc-----
Q 037597 17 GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYT--NFTGTVINQELHNL--TNLEELILDESDLHVS----- 87 (130)
Q Consensus 17 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~--~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~----- 87 (130)
+.+.+..+.+++|++-.+ +.+..-...-+.|.+|+|++| .+.. .. ++... ..|++|.+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~L--d~~sslsq~apklk~L~LS~N~~~~~~--~~-el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHL--DALSSLSQIAPKLKTLDLSHNHSKISS--ES-ELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred CCcceeeeecccchhhch--hhhhHHHHhcchhheeecccchhhhcc--hh-hhhhhcCCCHHHeeecCCccccchhhhH
Confidence 567788888999998322 122223345688999999999 4431 11 23322 3478999999987652
Q ss_pred hhHHhh-hcCCCCCEEe
Q 037597 88 QLLQSI-ASFTSLKYLS 103 (130)
Q Consensus 88 ~~~~~~-~~~~~L~~L~ 103 (130)
....++ ..+|.|..||
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 112222 2567776665
No 82
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=51.72 E-value=15 Score=34.09 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=25.6
Q ss_pred EcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCc
Q 037597 25 VLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTG 61 (130)
Q Consensus 25 ~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 61 (130)
||++|+| +...+..|..+.+|+.|+|.+|.+..
T Consensus 1 DLSnN~L----stLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKI----STIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcC----CccChHHhccCCCceEEEeeCCcccc
Confidence 5788998 34444567788999999999998863
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=46.52 E-value=17 Score=15.42 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=8.9
Q ss_pred CCCcEEEccCCC-CCC
Q 037597 72 TNLEELILDESD-LHV 86 (130)
Q Consensus 72 ~~L~~L~l~~n~-~~~ 86 (130)
++|++|++++|. +++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 456666666664 443
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=46.26 E-value=1.4 Score=33.70 Aligned_cols=14 Identities=43% Similarity=0.456 Sum_probs=6.8
Q ss_pred CCCCcEEEcCCccc
Q 037597 18 LRKLNTLVLGGTEV 31 (130)
Q Consensus 18 l~~L~~L~l~~n~~ 31 (130)
..++++|.+++|.+
T Consensus 203 ~~~le~L~L~~~~~ 216 (478)
T KOG4308|consen 203 LSSLETLKLSRCGV 216 (478)
T ss_pred cccHHHHhhhhcCc
Confidence 44455555555544
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.71 E-value=24 Score=32.96 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=26.4
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCccc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEV 31 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~ 31 (130)
|++|+|+... +..|..+++|++|+|++|.+
T Consensus 2 LSnN~LstLp-~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIE-EGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccC-hHHhccCCCceEEEeeCCcc
Confidence 6899998755 78888999999999999987
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=38.54 E-value=31 Score=26.29 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=19.4
Q ss_pred CCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccC
Q 037597 71 LTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQD 106 (130)
Q Consensus 71 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 106 (130)
+..++.+.+++++...+...+.+..+++|+.+++-.
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 345666666666543324444555666666555544
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.57 E-value=31 Score=27.10 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=40.4
Q ss_pred CCCCCCEEeccCCCCCcccch--HhhcCCCCCcEEEccCC--CCCCchhHHhhhcC--CCCCEEeccCccccc
Q 037597 45 SLPSLKTLYLSYTNFTGTVIN--QELHNLTNLEELILDES--DLHVSQLLQSIASF--TSLKYLSMQDSVLKG 111 (130)
Q Consensus 45 ~l~~L~~l~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~ 111 (130)
+.+.+..+.+++|++. .+.. .-....+++..|+|++| .+.. ...+... ..|++|-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~---~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISS---ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcc---hhhhhhhcCCCHHHeeecCCcccc
Confidence 4566778888999886 3222 02234467999999998 4444 2233333 347889899998763
Done!