Query 037597
Match_columns 130
No_of_seqs 110 out of 2363
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 03:29:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v70_A SLIT-2, SLIT homolog 2 99.8 5.5E-18 1.9E-22 113.3 11.1 123 1-130 39-161 (220)
2 2v9t_B SLIT homolog 2 protein 99.8 1.1E-17 3.9E-22 111.7 11.3 122 1-130 39-160 (220)
3 3e6j_A Variable lymphocyte rec 99.8 2.2E-17 7.4E-22 110.9 12.2 120 1-129 47-166 (229)
4 3m19_A Variable lymphocyte rec 99.7 5.1E-17 1.7E-21 110.2 12.1 102 2-110 43-144 (251)
5 2je0_A Acidic leucine-rich nuc 99.7 3.2E-17 1.1E-21 103.1 10.2 120 1-129 24-147 (149)
6 3m19_A Variable lymphocyte rec 99.7 7.2E-17 2.5E-21 109.5 12.1 122 1-130 66-187 (251)
7 3rgz_A Protein brassinosteroid 99.7 2.2E-17 7.4E-22 127.3 9.7 81 46-129 631-711 (768)
8 1ogq_A PGIP-2, polygalacturona 99.7 4.7E-18 1.6E-22 118.9 5.3 120 2-129 58-181 (313)
9 2o6s_A Variable lymphocyte rec 99.7 1.6E-16 5.4E-21 104.9 12.1 122 1-130 35-156 (208)
10 4fcg_A Uncharacterized protein 99.7 2.9E-17 1E-21 115.6 8.5 118 2-129 191-308 (328)
11 3rfs_A Internalin B, repeat mo 99.7 1.8E-16 6E-21 108.8 12.1 121 1-129 92-212 (272)
12 4g8a_A TOLL-like receptor 4; l 99.7 7.8E-17 2.7E-21 120.5 10.9 121 1-129 59-180 (635)
13 1w8a_A SLIT protein; signaling 99.7 8.6E-17 2.9E-21 105.3 9.6 117 2-129 16-133 (192)
14 3rgz_A Protein brassinosteroid 99.7 7.6E-17 2.6E-21 124.3 9.9 120 2-129 426-545 (768)
15 2ell_A Acidic leucine-rich nuc 99.7 1E-16 3.6E-21 102.6 8.3 119 1-129 31-154 (168)
16 2wfh_A SLIT homolog 2 protein 99.7 4.9E-16 1.7E-20 101.9 11.2 117 2-130 18-134 (193)
17 1ogq_A PGIP-2, polygalacturona 99.7 3.2E-17 1.1E-21 114.6 5.5 116 4-128 87-203 (313)
18 3v47_A TOLL-like receptor 5B a 99.7 3.5E-16 1.2E-20 113.6 11.1 122 1-130 282-403 (455)
19 3vq2_A TLR4, TOLL-like recepto 99.7 3.2E-16 1.1E-20 117.4 10.4 121 1-129 39-160 (606)
20 4fcg_A Uncharacterized protein 99.7 1.1E-16 3.7E-21 112.7 7.3 78 46-128 182-259 (328)
21 3rfs_A Internalin B, repeat mo 99.7 1.1E-15 3.7E-20 104.8 11.9 119 1-129 70-188 (272)
22 1ozn_A Reticulon 4 receptor; N 99.7 1E-15 3.5E-20 105.4 11.3 34 93-127 173-206 (285)
23 2v9t_B SLIT homolog 2 protein 99.7 9.9E-16 3.4E-20 102.3 10.9 118 2-130 19-136 (220)
24 2o6q_A Variable lymphocyte rec 99.7 1.5E-15 5.2E-20 104.0 12.1 102 2-110 45-146 (270)
25 2z62_A TOLL-like receptor 4, v 99.7 7.8E-16 2.7E-20 105.5 10.5 121 1-129 35-156 (276)
26 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-15 3.7E-20 105.2 11.2 119 2-128 40-159 (285)
27 2o6q_A Variable lymphocyte rec 99.7 1.7E-15 5.8E-20 103.7 12.0 108 15-129 105-212 (270)
28 2xot_A Amphoterin-induced prot 99.7 6.8E-16 2.3E-20 109.8 10.4 121 1-129 46-170 (361)
29 1p9a_G Platelet glycoprotein I 99.7 1.7E-15 5.8E-20 105.0 11.6 118 2-129 85-202 (290)
30 4ezg_A Putative uncharacterize 99.6 1.8E-15 6E-20 99.3 10.8 106 13-129 82-188 (197)
31 3v47_A TOLL-like receptor 5B a 99.6 2E-15 6.8E-20 109.6 11.9 122 1-129 37-161 (455)
32 3e6j_A Variable lymphocyte rec 99.6 2.8E-15 9.6E-20 100.6 11.6 117 2-130 27-143 (229)
33 2z66_A Variable lymphocyte rec 99.6 1.5E-15 5E-20 105.4 10.2 120 2-129 134-255 (306)
34 1w8a_A SLIT protein; signaling 99.6 1.2E-15 3.9E-20 100.0 8.9 107 1-114 36-143 (192)
35 1p9a_G Platelet glycoprotein I 99.6 1.8E-15 6E-20 104.9 10.0 88 39-129 92-179 (290)
36 2id5_A Lingo-1, leucine rich r 99.6 1.4E-15 4.9E-20 111.2 10.1 121 1-129 39-159 (477)
37 2z81_A CD282 antigen, TOLL-lik 99.6 1.3E-15 4.5E-20 112.8 9.6 123 1-129 33-155 (549)
38 2o6r_A Variable lymphocyte rec 99.6 7.5E-15 2.6E-19 94.6 11.9 117 2-129 15-131 (177)
39 2z63_A TOLL-like receptor 4, v 99.6 2.2E-15 7.7E-20 111.9 10.5 120 1-129 35-156 (570)
40 3t6q_A CD180 antigen; protein- 99.6 3E-15 1E-19 112.2 11.2 120 1-129 40-160 (606)
41 4ezg_A Putative uncharacterize 99.6 2.8E-15 9.6E-20 98.3 9.3 115 2-130 52-167 (197)
42 2v70_A SLIT-2, SLIT homolog 2 99.6 3.3E-15 1.1E-19 99.7 9.8 107 1-114 64-170 (220)
43 2z7x_B TOLL-like receptor 1, v 99.6 4.7E-15 1.6E-19 109.4 10.6 115 1-129 7-122 (520)
44 4eco_A Uncharacterized protein 99.6 6.4E-16 2.2E-20 117.1 6.1 110 10-129 239-360 (636)
45 3vq2_A TLR4, TOLL-like recepto 99.6 3.3E-15 1.1E-19 111.9 9.6 119 2-129 432-552 (606)
46 1ziw_A TOLL-like receptor 3; i 99.6 3.2E-15 1.1E-19 113.4 9.5 121 1-129 32-152 (680)
47 4g8a_A TOLL-like receptor 4; l 99.6 4.8E-15 1.6E-19 110.9 10.3 121 2-129 453-574 (635)
48 4eco_A Uncharacterized protein 99.6 3.5E-16 1.2E-20 118.5 4.1 119 3-129 192-337 (636)
49 3zyi_A Leucine-rich repeat-con 99.6 6.1E-15 2.1E-19 107.5 10.4 122 1-129 82-203 (452)
50 1dce_A Protein (RAB geranylger 99.6 4.1E-15 1.4E-19 111.6 9.7 116 1-128 448-566 (567)
51 2z80_A TOLL-like receptor 2, v 99.6 5.1E-15 1.7E-19 104.7 9.6 120 1-129 59-181 (353)
52 2z66_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 103.4 8.6 121 2-129 109-230 (306)
53 3zyj_A Leucine-rich repeat-con 99.6 8.8E-15 3E-19 106.3 10.8 122 1-129 71-192 (440)
54 4b8c_D Glucose-repressible alc 99.6 2.1E-15 7.3E-20 115.9 7.6 109 11-130 216-324 (727)
55 1a9n_A U2A', U2A'; complex (nu 99.6 6.5E-15 2.2E-19 95.0 8.7 116 1-129 26-147 (176)
56 2id5_A Lingo-1, leucine rich r 99.6 4.5E-15 1.5E-19 108.6 8.5 119 1-127 63-181 (477)
57 3j0a_A TOLL-like receptor 5; m 99.6 3.7E-15 1.3E-19 115.9 8.4 122 1-129 31-155 (844)
58 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.7E-19 95.5 9.4 102 1-110 38-139 (193)
59 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.9E-19 93.3 9.7 107 1-114 35-141 (177)
60 2z7x_B TOLL-like receptor 1, v 99.6 2.1E-14 7.1E-19 106.0 11.5 122 1-129 331-475 (520)
61 2o6s_A Variable lymphocyte rec 99.6 4.4E-14 1.5E-18 93.1 11.9 117 3-130 16-132 (208)
62 2z62_A TOLL-like receptor 4, v 99.6 9.8E-15 3.4E-19 100.0 8.8 118 1-125 59-176 (276)
63 2z63_A TOLL-like receptor 4, v 99.6 7.3E-15 2.5E-19 109.1 8.7 122 2-130 404-526 (570)
64 2xot_A Amphoterin-induced prot 99.6 6.8E-15 2.3E-19 104.6 8.1 114 1-123 71-188 (361)
65 3oja_B Anopheles plasmodium-re 99.6 6.1E-15 2.1E-19 110.9 8.1 108 14-129 70-178 (597)
66 3oja_A Leucine-rich immune mol 99.6 8.2E-15 2.8E-19 108.0 8.6 117 1-129 127-244 (487)
67 1xku_A Decorin; proteoglycan, 99.6 4.4E-14 1.5E-18 99.0 11.9 118 1-129 59-178 (330)
68 3o53_A Protein LRIM1, AGAP0063 99.6 1E-14 3.6E-19 101.9 8.6 118 1-130 127-245 (317)
69 3g39_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 91.5 10.1 103 1-113 16-118 (170)
70 2z81_A CD282 antigen, TOLL-lik 99.6 3.3E-14 1.1E-18 105.4 11.5 117 2-129 13-130 (549)
71 2z80_A TOLL-like receptor 2, v 99.6 7.1E-15 2.4E-19 103.9 7.5 121 1-129 83-205 (353)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.4E-14 8.4E-19 106.7 10.6 100 19-128 52-152 (562)
73 3o6n_A APL1; leucine-rich repe 99.6 8.7E-15 3E-19 104.7 7.8 107 15-129 65-172 (390)
74 3t6q_A CD180 antigen; protein- 99.6 1.7E-14 5.9E-19 108.1 9.7 110 12-129 442-554 (606)
75 2xwt_C Thyrotropin receptor; s 99.5 6.7E-15 2.3E-19 99.0 6.0 118 2-129 39-163 (239)
76 4ecn_A Leucine-rich repeat pro 99.5 1.7E-15 5.8E-20 118.3 3.4 118 4-129 435-580 (876)
77 2r9u_A Variable lymphocyte rec 99.5 5.8E-14 2E-18 90.6 10.1 99 2-110 20-118 (174)
78 2je0_A Acidic leucine-rich nuc 99.5 3.2E-14 1.1E-18 89.2 8.5 105 17-130 15-121 (149)
79 1wwl_A Monocyte differentiatio 99.5 2.1E-14 7E-19 100.2 8.3 88 41-129 167-260 (312)
80 1xku_A Decorin; proteoglycan, 99.5 6.2E-14 2.1E-18 98.2 10.5 79 47-129 192-270 (330)
81 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 6.4E-14 2.2E-18 104.5 10.9 123 1-129 360-504 (562)
82 3zyj_A Leucine-rich repeat-con 99.5 6.1E-14 2.1E-18 101.9 10.6 109 12-129 178-286 (440)
83 4ecn_A Leucine-rich repeat pro 99.5 9.5E-15 3.2E-19 114.1 6.2 108 12-129 482-602 (876)
84 3oja_B Anopheles plasmodium-re 99.5 9.8E-14 3.4E-18 104.3 11.1 104 1-111 82-185 (597)
85 3zyi_A Leucine-rich repeat-con 99.5 1.5E-13 5E-18 100.2 11.5 108 13-129 190-297 (452)
86 3o6n_A APL1; leucine-rich repe 99.5 1.4E-13 4.6E-18 98.5 11.1 104 1-111 76-179 (390)
87 1xeu_A Internalin C; cellular 99.5 2.4E-13 8.1E-18 93.0 11.8 74 47-129 106-179 (263)
88 1h6t_A Internalin B; cell adhe 99.5 4E-13 1.4E-17 93.0 12.6 84 15-110 86-169 (291)
89 4b8c_D Glucose-repressible alc 99.5 5.5E-15 1.9E-19 113.6 3.4 104 1-115 231-334 (727)
90 2ell_A Acidic leucine-rich nuc 99.5 5.5E-14 1.9E-18 89.8 7.5 105 16-130 21-128 (168)
91 2ft3_A Biglycan; proteoglycan, 99.5 1.4E-13 4.8E-18 96.5 10.1 99 2-110 62-160 (332)
92 1wwl_A Monocyte differentiatio 99.5 1.4E-14 4.7E-19 101.1 4.9 120 2-129 103-235 (312)
93 1xeu_A Internalin C; cellular 99.5 3.2E-13 1.1E-17 92.3 11.2 111 1-130 48-158 (263)
94 3j0a_A TOLL-like receptor 5; m 99.5 6.9E-14 2.4E-18 108.8 8.6 121 2-128 56-180 (844)
95 1h6u_A Internalin H; cell adhe 99.5 6.1E-13 2.1E-17 92.7 12.5 62 43-110 103-164 (308)
96 1h6t_A Internalin B; cell adhe 99.5 4.2E-13 1.4E-17 92.9 11.5 111 1-129 97-207 (291)
97 2ft3_A Biglycan; proteoglycan, 99.5 1E-13 3.5E-18 97.2 8.5 119 2-129 201-327 (332)
98 3g39_A Variable lymphocyte rec 99.5 2.1E-13 7.3E-18 87.6 9.2 101 20-130 10-110 (170)
99 1ziw_A TOLL-like receptor 3; i 99.5 2.4E-13 8.2E-18 103.1 10.8 117 2-130 12-129 (680)
100 1h6u_A Internalin H; cell adhe 99.5 7.3E-13 2.5E-17 92.3 12.1 111 1-129 48-158 (308)
101 4fmz_A Internalin; leucine ric 99.5 9.1E-13 3.1E-17 92.6 12.5 113 1-129 228-340 (347)
102 4glp_A Monocyte differentiatio 99.5 1.1E-13 3.9E-18 96.3 7.6 106 17-129 143-258 (310)
103 2r9u_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 87.0 9.1 99 21-130 14-113 (174)
104 1dce_A Protein (RAB geranylger 99.5 3.7E-13 1.3E-17 101.0 9.5 99 20-130 442-541 (567)
105 1m9s_A Internalin B; cell inva 99.4 1.2E-12 4.1E-17 98.9 11.7 101 14-129 104-204 (605)
106 1m9s_A Internalin B; cell inva 99.4 1.3E-12 4.5E-17 98.7 11.9 112 1-130 72-183 (605)
107 2ast_B S-phase kinase-associat 99.4 1.9E-13 6.4E-18 95.7 6.7 120 2-129 78-202 (336)
108 4glp_A Monocyte differentiatio 99.4 1.4E-13 4.7E-18 95.9 5.8 118 1-129 152-279 (310)
109 2xwt_C Thyrotropin receptor; s 99.4 1.3E-13 4.6E-18 92.6 5.0 38 68-107 151-189 (239)
110 4fmz_A Internalin; leucine ric 99.4 1.5E-12 5.2E-17 91.5 10.5 113 2-130 207-319 (347)
111 3o53_A Protein LRIM1, AGAP0063 99.4 6.3E-14 2.2E-18 97.9 3.3 115 1-127 151-267 (317)
112 2ifg_A High affinity nerve gro 99.4 1.2E-12 4.3E-17 92.2 9.9 96 5-110 20-116 (347)
113 3oja_A Leucine-rich immune mol 99.4 4.5E-13 1.5E-17 98.8 7.9 116 1-130 106-222 (487)
114 2ast_B S-phase kinase-associat 99.4 2.6E-13 8.8E-18 95.0 5.8 112 12-129 135-254 (336)
115 1ds9_A Outer arm dynein; leuci 99.4 2.5E-15 8.7E-20 98.6 -4.9 104 14-129 43-147 (198)
116 1a9n_A U2A', U2A'; complex (nu 99.4 8.9E-13 3E-17 84.9 6.9 105 14-130 14-121 (176)
117 1o6v_A Internalin A; bacterial 99.3 2E-11 6.8E-16 89.2 12.4 84 15-110 261-344 (466)
118 1o6v_A Internalin A; bacterial 99.3 1.7E-11 5.7E-16 89.7 11.9 111 1-129 272-382 (466)
119 1ds9_A Outer arm dynein; leuci 99.3 7.8E-15 2.7E-19 96.2 -5.6 115 1-128 55-180 (198)
120 2ifg_A High affinity nerve gro 99.3 8.1E-12 2.8E-16 88.0 9.4 98 22-129 11-110 (347)
121 2ca6_A RAN GTPase-activating p 99.3 1E-12 3.6E-17 93.8 4.7 126 1-129 166-310 (386)
122 3goz_A Leucine-rich repeat-con 99.3 1.3E-12 4.5E-17 92.8 3.8 105 1-112 5-124 (362)
123 3bz5_A Internalin-J, INLJ; leu 99.3 2.9E-11 9.8E-16 88.6 10.7 106 1-128 49-154 (457)
124 2ca6_A RAN GTPase-activating p 99.3 1.7E-12 5.7E-17 92.8 2.9 45 16-60 91-135 (386)
125 4ay9_X Follicle-stimulating ho 99.2 2.1E-11 7.3E-16 86.2 7.6 114 3-127 18-133 (350)
126 3cvr_A Invasion plasmid antige 99.2 4.8E-11 1.7E-15 89.6 9.1 93 17-129 138-237 (571)
127 1jl5_A Outer protein YOPM; leu 99.2 8.3E-11 2.8E-15 86.1 9.8 105 2-128 139-243 (454)
128 3bz5_A Internalin-J, INLJ; leu 99.2 2.7E-10 9.1E-15 83.4 11.3 88 1-107 71-158 (457)
129 3goz_A Leucine-rich repeat-con 99.2 7.9E-12 2.7E-16 88.7 2.5 12 20-31 52-63 (362)
130 1z7x_W Ribonuclease inhibitor; 99.1 6.2E-12 2.1E-16 91.3 0.6 60 68-129 337-405 (461)
131 3g06_A SSPH2 (leucine-rich rep 99.1 5.5E-10 1.9E-14 84.7 10.7 71 47-129 221-291 (622)
132 3cvr_A Invasion plasmid antige 99.1 5.4E-11 1.9E-15 89.4 5.2 101 1-122 147-254 (571)
133 1jl5_A Outer protein YOPM; leu 99.1 1.7E-09 5.8E-14 79.1 10.5 82 19-115 131-212 (454)
134 1z7x_W Ribonuclease inhibitor; 99.0 1.1E-10 3.6E-15 84.8 3.3 20 12-31 106-125 (461)
135 3g06_A SSPH2 (leucine-rich rep 99.0 2.5E-09 8.7E-14 81.1 10.4 68 2-86 48-115 (622)
136 4ay9_X Follicle-stimulating ho 99.0 3E-10 1E-14 80.3 4.3 119 3-127 89-231 (350)
137 3sb4_A Hypothetical leucine ri 98.9 2.8E-09 9.7E-14 74.6 7.6 103 18-129 225-328 (329)
138 3un9_A NLR family member X1; l 98.9 4.4E-10 1.5E-14 80.4 1.5 91 19-110 155-252 (372)
139 3un9_A NLR family member X1; l 98.8 1.8E-09 6.3E-14 77.2 4.2 123 1-129 108-246 (372)
140 3sb4_A Hypothetical leucine ri 98.8 3.2E-08 1.1E-12 69.3 9.2 79 46-129 225-304 (329)
141 3ogk_B Coronatine-insensitive 98.7 1.5E-08 5.3E-13 75.5 6.3 94 14-112 431-528 (592)
142 1io0_A Tropomodulin; LRR prote 98.7 1.2E-08 4.1E-13 66.2 4.7 114 14-129 31-158 (185)
143 3rw6_A Nuclear RNA export fact 98.6 8.8E-08 3E-12 65.7 6.4 66 45-114 168-237 (267)
144 1io0_A Tropomodulin; LRR prote 98.6 2.8E-08 9.7E-13 64.4 3.5 98 12-110 58-164 (185)
145 3ogk_B Coronatine-insensitive 98.6 1.1E-07 3.8E-12 70.9 6.7 86 17-105 162-251 (592)
146 2p1m_B Transport inhibitor res 98.5 1.5E-08 5.1E-13 75.6 0.6 104 17-127 128-240 (594)
147 3rw6_A Nuclear RNA export fact 98.5 2E-07 6.8E-12 63.9 5.9 85 16-104 167-258 (267)
148 3e4g_A ATP synthase subunit S, 98.5 4.3E-07 1.5E-11 58.5 6.5 91 12-108 54-150 (176)
149 2p1m_B Transport inhibitor res 98.4 3.7E-08 1.3E-12 73.4 -0.0 82 45-129 430-513 (594)
150 4fdw_A Leucine rich hypothetic 98.2 9.8E-06 3.4E-10 58.4 8.6 112 12-129 264-377 (401)
151 4fdw_A Leucine rich hypothetic 98.0 2.9E-05 9.9E-10 56.0 8.4 110 12-129 173-307 (401)
152 2ra8_A Uncharacterized protein 98.0 5.1E-06 1.7E-10 59.2 3.9 58 70-129 250-314 (362)
153 3e4g_A ATP synthase subunit S, 97.9 9.1E-06 3.1E-10 52.3 3.7 80 47-129 61-146 (176)
154 2ra8_A Uncharacterized protein 97.6 3E-05 1E-09 55.2 3.0 92 17-110 217-320 (362)
155 4gt6_A Cell surface protein; l 97.6 0.00051 1.7E-08 49.0 8.8 104 14-128 260-363 (394)
156 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00033 1.1E-08 45.8 5.8 90 17-107 39-136 (197)
157 4h09_A Hypothetical leucine ri 97.4 0.0012 4.1E-08 46.7 8.7 104 15-128 236-339 (379)
158 4fs7_A Uncharacterized protein 97.4 0.00074 2.5E-08 48.2 7.5 102 14-127 292-393 (394)
159 4fs7_A Uncharacterized protein 97.2 0.0017 6E-08 46.2 8.3 81 43-129 293-373 (394)
160 3rfe_A Platelet glycoprotein I 97.1 0.00098 3.4E-08 40.6 5.3 38 47-85 31-68 (130)
161 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0015 5.2E-08 42.7 5.1 99 12-110 63-170 (197)
162 4h09_A Hypothetical leucine ri 96.9 0.0035 1.2E-07 44.3 7.2 101 12-122 256-356 (379)
163 4gt6_A Cell surface protein; l 96.9 0.0049 1.7E-07 43.9 7.9 104 12-128 281-384 (394)
164 3rfe_A Platelet glycoprotein I 96.7 0.0033 1.1E-07 38.2 5.2 53 2-60 16-68 (130)
165 2lz0_A Uncharacterized protein 44.5 24 0.00083 19.8 3.1 39 67-107 15-53 (100)
No 1
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=5.5e-18 Score=113.25 Aligned_cols=123 Identities=12% Similarity=0.190 Sum_probs=103.2
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++...+..+..+++|++|++++|.+ +...+..+..+++|+.|++++|.+++..+. .+..+++|++|+++
T Consensus 39 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i----~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 39 LNNNEFTVLEATGIFKKLPQLRKINFSNNKI----TDIEEGAFEGASGVNEILLTSNRLENVQHK-MFKGLESLKTLMLR 113 (220)
T ss_dssp CCSSCCCEECCCCCGGGCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCGG-GGTTCSSCCEEECT
T ss_pred cCCCcCCccCchhhhccCCCCCEEECCCCcC----CEECHHHhCCCCCCCEEECCCCccCccCHh-HhcCCcCCCEEECC
Confidence 4678887754234578999999999999999 444555788999999999999999855555 78899999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
+|.+.. ..|..+..+++|+.|++++|.+++..|. .|..+++|+++.+.
T Consensus 114 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 114 SNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLL 161 (220)
T ss_dssp TSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred CCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEec
Confidence 999998 5577889999999999999999966677 88999999988763
No 2
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.1e-17 Score=111.73 Aligned_cols=122 Identities=19% Similarity=0.290 Sum_probs=101.6
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.|+... +..+..+++|++|++++|.+ ....|..+..+++|+.|++++|.++ .++...+..+++|+.|+++
T Consensus 39 l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 39 LEQNTIKVIP-PGAFSPYKKLRRIDLSNNQI----SELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp CCSSCCCEEC-TTSSTTCTTCCEEECCSSCC----CEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCCCcCCCcC-HhHhhCCCCCCEEECCCCcC----CCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECC
Confidence 4678887644 66889999999999999999 4556778899999999999999998 5555257889999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
+|.+.. ..+..+..+++|+.|++++|.+++..+. .+..+++|+++.++
T Consensus 113 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 113 ANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKG-TFSPLRAIQTMHLA 160 (220)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECC
T ss_pred CCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHH-HHhCCCCCCEEEeC
Confidence 999998 5567889999999999999999954444 78889999888763
No 3
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2.2e-17 Score=110.92 Aligned_cols=120 Identities=25% Similarity=0.317 Sum_probs=100.7
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.+++.. |..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+..+++|+.|+++
T Consensus 47 Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l----~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 47 LHDNQITKLE-PGVFDSLINLKELYLGSNQL----GALPVGVFDSLTQLTVLDLGTNQLTVLPSA-VFDRLVHLKELFMC 120 (229)
T ss_dssp CCSSCCCCCC-TTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred cCCCccCccC-HHHhhCccCCcEEECCCCCC----CCcChhhcccCCCcCEEECCCCcCCccChh-HhCcchhhCeEecc
Confidence 5788888855 88899999999999999999 344445578899999999999999844444 67889999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. +|..+..+++|+.|++++|++. .+|...+..+++|+++.+
T Consensus 121 ~N~l~~--lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 121 CNKLTE--LPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp SSCCCS--CCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCcccc--cCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEe
Confidence 999998 7888999999999999999999 555437888999988876
No 4
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=5.1e-17 Score=110.24 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=46.6
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.+++.. +..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+..+++|++|++++
T Consensus 43 ~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 43 QSTGLATLS-DATFRGLTKLTWLNLDYNQL----QTLSAGVFDDLTELGTLGLANNQLASLPLG-VFDHLTQLDKLYLGG 116 (251)
T ss_dssp TTSCCCCCC-TTTTTTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred cCCCcCccC-HhHhcCcccCCEEECCCCcC----CccCHhHhccCCcCCEEECCCCcccccChh-HhcccCCCCEEEcCC
Confidence 445554433 44455555555555555555 233333344555555555555555422222 344444444444444
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccc
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
|.+.. ..+..+..+++|++|++++|.+.
T Consensus 117 N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 117 NQLKS-LPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCC-cChhHhccCCcccEEECcCCcCC
Confidence 44444 22222344444444444444444
No 5
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=3.2e-17 Score=103.09 Aligned_cols=120 Identities=14% Similarity=0.079 Sum_probs=100.5
Q ss_pred CCCCCCC-CccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEc
Q 037597 1 MSANAID-NLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~-~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 79 (130)
+++|.++ +.+ |..+..+++|++|++++|.+ ... ..++.+++|+++++++|.+++..|. .+..+++|++|++
T Consensus 24 l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l----~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l 95 (149)
T 2je0_A 24 LDNSRSNEGKL-EGLTDEFEELEFLSTINVGL----TSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHLNL 95 (149)
T ss_dssp CTTCBCBTTBC-CSCCTTCTTCCEEECTTSCC----CCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEEEC
T ss_pred ccCCcCChhHH-HHHHhhcCCCcEEECcCCCC----CCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEEEC
Confidence 4678887 445 88889999999999999999 333 7788999999999999999965777 7778999999999
Q ss_pred cCCCCCCch-hHHhhhcCCCCCEEeccCcccccccCc--ccccCcccceeeee
Q 037597 80 DESDLHVSQ-LLQSIASFTSLKYLSMQDSVLKGALHG--QGKLRVSEAFVILI 129 (130)
Q Consensus 80 ~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~~l~~l~~l~~ 129 (130)
++|.+.+ . .+..++.+++|++|++++|.+++..+. ..+..+++|+++.+
T Consensus 96 s~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 9999998 2 237889999999999999999955440 36888899988865
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=7.2e-17 Score=109.51 Aligned_cols=122 Identities=25% Similarity=0.325 Sum_probs=102.5
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++.. +..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+..+++|++|+++
T Consensus 66 L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 66 LDYNQLQTLS-AGVFDDLTELGTLGLANNQL----ASLPLGVFDHLTQLDKLYLGGNQLKSLPSG-VFDRLTKLKELRLN 139 (251)
T ss_dssp CTTSCCCCCC-TTTTTTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred CCCCcCCccC-HhHhccCCcCCEEECCCCcc----cccChhHhcccCCCCEEEcCCCcCCCcChh-HhccCCcccEEECc
Confidence 5788898755 77789999999999999999 455556778999999999999999844444 67889999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
+|.+.. ..+..++.+++|++|++++|.+.+..+. .+..+++|+++.+.
T Consensus 140 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 140 TNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHG-AFDRLGKLQTITLF 187 (251)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECC
T ss_pred CCcCCc-cCHHHcCcCcCCCEEECCCCcCCccCHH-HHhCCCCCCEEEee
Confidence 999998 4444789999999999999999955555 78889999988763
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.72 E-value=2.2e-17 Score=127.30 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=59.8
Q ss_pred CCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccce
Q 037597 46 LPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAF 125 (130)
Q Consensus 46 l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~ 125 (130)
++.|+.+++++|.+++.+|. .+..++.|+.|++++|.+++ .+|..++.+++|+.|++++|+++|.+|. .+..++.|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~LdLs~N~l~g~ip~-~l~~l~~L~ 707 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLT 707 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEECCCG-GGGGCCCCS
T ss_pred cccccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCC-CCChHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCC
Confidence 45566777777777767776 77777777777777777776 6777777777777777777777777777 777777777
Q ss_pred eeee
Q 037597 126 VILI 129 (130)
Q Consensus 126 ~l~~ 129 (130)
++.+
T Consensus 708 ~L~l 711 (768)
T 3rgz_A 708 EIDL 711 (768)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7765
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=4.7e-18 Score=118.85 Aligned_cols=120 Identities=24% Similarity=0.305 Sum_probs=81.6
Q ss_pred CCCCCCC--ccCccccCCCCCCcEEEcCC-cccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEE
Q 037597 2 SANAIDN--LVVPKDYRGLRKLNTLVLGG-TEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELI 78 (130)
Q Consensus 2 ~~n~l~~--~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ 78 (130)
++|.+++ .+ |+.+..+++|++|++++ |.+ .+..|..++.+++|++|++++|.+++..|. .+..+++|++|+
T Consensus 58 ~~~~l~~~~~~-~~~l~~l~~L~~L~L~~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~ 131 (313)
T 1ogq_A 58 SGLNLPKPYPI-PSSLANLPYLNFLYIGGINNL----VGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLD 131 (313)
T ss_dssp ECCCCSSCEEC-CGGGGGCTTCSEEEEEEETTE----ESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCCEEE
T ss_pred CCCCccCCccc-ChhHhCCCCCCeeeCCCCCcc----cccCChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCCCCEEe
Confidence 4556655 44 66777777777777773 666 456666677777777777777777666666 667777777777
Q ss_pred ccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcc-cceeeee
Q 037597 79 LDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVS-EAFVILI 129 (130)
Q Consensus 79 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~-~l~~l~~ 129 (130)
+++|.+.+ ..|..++.+++|++|++++|.+++.+|. .+..++ .|+++.+
T Consensus 132 Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 132 FSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTI 181 (313)
T ss_dssp CCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEEC
T ss_pred CCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEEC
Confidence 77777765 4666677777777777777777766766 666665 6666654
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.6e-16 Score=104.92 Aligned_cols=122 Identities=25% Similarity=0.275 Sum_probs=96.7
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.++... +..+..+++|++|++++|.+ ....+..+..+++|++|++++|.+++..+. .+..+++|++|+++
T Consensus 35 l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 35 LETNSLKSLP-NGVFDELTSLTQLYLGGNKL----QSLPNGVFNKLTSLTYLNLSTNQLQSLPNG-VFDKLTQLKELALN 108 (208)
T ss_dssp CCSSCCCCCC-TTTTTTCTTCSEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred cCCCccCcCC-hhhhcccccCcEEECCCCcc----CccChhhcCCCCCcCEEECCCCcCCccCHh-HhcCccCCCEEEcC
Confidence 4678887643 66678999999999999998 444444568899999999999999844444 67889999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
+|.+.. ..+..+..+++|+.|++++|.+++ +|...+..+++|+++.+.
T Consensus 109 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 109 TNQLQS-LPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECC
T ss_pred CCcCcc-cCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEec
Confidence 999988 444457889999999999999994 444268888899888763
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.71 E-value=2.9e-17 Score=115.57 Aligned_cols=118 Identities=21% Similarity=0.240 Sum_probs=96.4
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.++. +|..+..+++|++|++++|.+ ..+|+.++.+++|+.|++++|.+.+..|. .+..+++|+.|++++
T Consensus 191 ~~n~l~~--lp~~l~~l~~L~~L~L~~N~l-----~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 191 EWTGIRS--LPASIANLQNLKSLKIRNSPL-----SALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKD 262 (328)
T ss_dssp EEECCCC--CCGGGGGCTTCCEEEEESSCC-----CCCCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTT
T ss_pred cCCCcCc--chHhhcCCCCCCEEEccCCCC-----CcCchhhccCCCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCC
Confidence 4566663 377788888888888888888 34666788888888898888888777777 788888899999988
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
|.+.+ .+|..++.+++|+.|++++|++.+.+|. .+++++.++.+.+
T Consensus 263 n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l 308 (328)
T 4fcg_A 263 CSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILV 308 (328)
T ss_dssp CTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEEC
T ss_pred CCchh-hcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeC
Confidence 88777 6788888889999999998888888888 8888888887764
No 11
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.8e-16 Score=108.79 Aligned_cols=121 Identities=24% Similarity=0.237 Sum_probs=78.5
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++.. +..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+..+++|+.|+++
T Consensus 92 L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 92 LTGNQLQSLP-NGVFDKLTNLKELVLVENQL----QSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTELDLS 165 (272)
T ss_dssp CTTSCCCCCC-TTTTTTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred CCCCccCccC-hhHhcCCcCCCEEECCCCcC----CccCHHHhccCCCCCEEECCCCccCccCHH-HhccCccCCEEECC
Confidence 3556666533 44566677777777777776 343444466677777777777777643333 55667777777777
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.+ ..+..++.+++|++|++++|.+.+..|. .+..+++|+++.+
T Consensus 166 ~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l 212 (272)
T 3rfs_A 166 YNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWL 212 (272)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEEC
T ss_pred CCCcCc-cCHHHhcCCccCCEEECCCCcCCccCHH-HHhCCcCCCEEEc
Confidence 777776 3344456777777777777777754444 5677777777665
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=7.8e-17 Score=120.54 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=96.8
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.|+... +.+|.++++|++|++++|.+ +...+..|..+++|++|++++|.++ .++.+.|.++++|++|+++
T Consensus 59 Ls~N~i~~l~-~~~f~~l~~L~~L~Ls~N~i----~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 59 LSFNPLRHLG-SYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp CTTSCCCEEC-TTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECT
T ss_pred eeCCCCCCCC-HHHHhCCCCCCEEECCCCcC----CCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECC
Confidence 5788888744 67889999999999999998 3444556888999999999999988 4454378889999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCccccc-ccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKG-ALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. ..+..++.+++|++|++++|.+.+ .+|. .+..++.|++|.+
T Consensus 133 ~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L 180 (635)
T 4g8a_A 133 ETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDL 180 (635)
T ss_dssp TSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEEC
T ss_pred CCcCCC-CChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcc
Confidence 999988 433468889999999999998874 3556 7788888888865
No 13
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=8.6e-17 Score=105.35 Aligned_cols=117 Identities=21% Similarity=0.326 Sum_probs=87.3
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhh-hcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQ-SIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
++|.++. +|..+.. ++++|++++|.+ ....+. .+..+++|+.|++++|.+++..+. .+..+++|++|+++
T Consensus 16 s~~~l~~--ip~~~~~--~l~~L~l~~n~i----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 16 TGRGLKE--IPRDIPL--HTTELLLNDNEL----GRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLG 86 (192)
T ss_dssp TTSCCSS--CCSCCCT--TCSEEECCSCCC----CSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred CCCCcCc--CccCCCC--CCCEEECCCCcC----CccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECC
Confidence 5666654 3655533 788888888888 333332 367788888888888888866566 78888888888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.+ ..+..+..+++|++|++++|++++..|. .+..+++|+++.+
T Consensus 87 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L 133 (192)
T 1w8a_A 87 ENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNL 133 (192)
T ss_dssp SCCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEEC
T ss_pred CCcCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEe
Confidence 888887 4445677888888888888888876677 7888888888765
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.70 E-value=7.6e-17 Score=124.25 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=72.6
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.+++.. |..+..+++|++|++++|.+ .+..|..+..+++|+.+++++|.+++..|. .+..+++|++|++++
T Consensus 426 s~N~l~~~~-p~~l~~l~~L~~L~L~~n~l----~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 426 SFNYLSGTI-PSSLGSLSKLRDLKLWLNML----EGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSN 499 (768)
T ss_dssp CSSEEESCC-CGGGGGCTTCCEEECCSSCC----CSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCS
T ss_pred cCCcccCcc-cHHHhcCCCCCEEECCCCcc----cCcCCHHHcCCCCceEEEecCCcccCcCCH-HHhcCCCCCEEEccC
Confidence 445554444 55555555566666655555 345555555666666666666666655555 566666666666666
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
|.+.+ ..|..++.+++|++|++++|++.+.+|. .++++++|+++.+
T Consensus 500 N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L 545 (768)
T 3rgz_A 500 NRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDL 545 (768)
T ss_dssp SCCCS-CCCGGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEEC
T ss_pred CccCC-cCChHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEEC
Confidence 66665 5566666666666666666666666666 6666666666554
No 15
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1e-16 Score=102.57 Aligned_cols=119 Identities=18% Similarity=0.105 Sum_probs=99.2
Q ss_pred CCCCCCC-CccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEc
Q 037597 1 MSANAID-NLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~-~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 79 (130)
+++|.++ +.+ |..+..+++|++|++++|.+ ... ..+..+++|+.|++++|.+++..|. .+..+++|++|++
T Consensus 31 l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l----~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L 102 (168)
T 2ell_A 31 LDNCKSNDGKI-EGLTAEFVNLEFLSLINVGL----ISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTHLNL 102 (168)
T ss_dssp CCSCBCBTTBC-SSCCGGGGGCCEEEEESSCC----CCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCEEEC
T ss_pred CCCCCCChhhH-HHHHHhCCCCCEEeCcCCCC----CCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCEEec
Confidence 4678887 444 87889999999999999999 333 6788999999999999999966777 7777999999999
Q ss_pred cCCCCCCchhH--HhhhcCCCCCEEeccCcccccccCc--ccccCcccceeeee
Q 037597 80 DESDLHVSQLL--QSIASFTSLKYLSMQDSVLKGALHG--QGKLRVSEAFVILI 129 (130)
Q Consensus 80 ~~n~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~~l~~l~~l~~ 129 (130)
++|.+.+ ++ ..+..+++|+.|++++|.+.+..+. ..+..+++|+++.+
T Consensus 103 s~N~l~~--~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 103 SGNKLKD--ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp BSSSCCS--SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred cCCccCc--chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 9999998 44 6889999999999999999954440 26788888888764
No 16
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=4.9e-16 Score=101.93 Aligned_cols=117 Identities=20% Similarity=0.253 Sum_probs=95.1
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.++. +|..+ .+++++|++++|.+ ..+|..+..+++|+.|++++|.+++..+. .|..+++|++|++++
T Consensus 18 ~~~~l~~--ip~~~--~~~l~~L~L~~n~i-----~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 18 SNKGLKV--LPKGI--PRDVTELYLDGNQF-----TLVPKELSNYKHLTLIDLSNNRISTLSNQ-SFSNMTQLLTLILSY 87 (193)
T ss_dssp TTSCCSS--CCSCC--CTTCCEEECCSSCC-----CSCCGGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred CCCCCCc--CCCCC--CCCCCEEECCCCcC-----chhHHHhhcccCCCEEECCCCcCCEeCHh-HccCCCCCCEEECCC
Confidence 4666664 46554 36899999999998 36677888999999999999999855455 788999999999999
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
|.+.. ..+..+..+++|+.|++++|.++ .+|...|..+++|+++.++
T Consensus 88 N~l~~-i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 88 NRLRC-IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp SCCCB-CCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECC
T ss_pred CccCE-eCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeC
Confidence 99998 55567889999999999999999 5555368888888888763
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=3.2e-17 Score=114.62 Aligned_cols=116 Identities=20% Similarity=0.292 Sum_probs=72.4
Q ss_pred CCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCC
Q 037597 4 NAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESD 83 (130)
Q Consensus 4 n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 83 (130)
|.+.+.. |+.+..+++|++|++++|.+ .+..|..+..+++|++|++++|.+++..|. .+..+++|++|++++|.
T Consensus 87 n~l~~~~-p~~l~~l~~L~~L~Ls~n~l----~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 87 NNLVGPI-PPAIAKLTQLHYLYITHTNV----SGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNR 160 (313)
T ss_dssp TTEESCC-CGGGGGCTTCSEEEEEEECC----EEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSC
T ss_pred CcccccC-ChhHhcCCCCCEEECcCCee----CCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCc
Confidence 5555544 66666677777777777666 345666666666777777777766655665 66666666666666666
Q ss_pred CCCchhHHhhhcCC-CCCEEeccCcccccccCcccccCcccceeee
Q 037597 84 LHVSQLLQSIASFT-SLKYLSMQDSVLKGALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 84 ~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~ 128 (130)
+.+ ..|..++.++ .|+.|++++|.+.+.+|. .+..++ |++|.
T Consensus 161 l~~-~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~ 203 (313)
T 1ogq_A 161 ISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVD 203 (313)
T ss_dssp CEE-ECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEE
T ss_pred ccC-cCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEE
Confidence 664 4566666665 666666666666655555 444443 44443
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.68 E-value=3.5e-16 Score=113.61 Aligned_cols=122 Identities=22% Similarity=0.193 Sum_probs=102.7
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+.+.. |..+..+++|++|++++|.+ .+..+..+..+++|+.|++++|.+++..+. .+..+++|++|+++
T Consensus 282 l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 282 LSKSKIFALL-KSVFSHFTDLEQLTLAQNEI----NKIDDNAFWGLTHLLKLNLSQNFLGSIDSR-MFENLDKLEVLDLS 355 (455)
T ss_dssp CCSSCCCEEC-TTTTTTCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCEECGG-GGTTCTTCCEEECC
T ss_pred ecCccccccc-hhhcccCCCCCEEECCCCcc----cccChhHhcCcccCCEEECCCCccCCcChh-HhcCcccCCEEECC
Confidence 3567777655 88899999999999999999 555677888999999999999999855566 78899999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
+|.+.+ ..|..+..+++|++|++++|+++ .+|...+..+++|+++.++
T Consensus 356 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 356 YNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp SSCCCE-ECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECC
T ss_pred CCcccc-cChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEcc
Confidence 999998 55778999999999999999999 4554367889999988763
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=3.2e-16 Score=117.40 Aligned_cols=121 Identities=19% Similarity=0.201 Sum_probs=97.7
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++.. +..+.++++|++|++++|.+ ....|..+..+++|++|++++|.+++..|. .+.++++|++|+++
T Consensus 39 Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 39 LSFNPLKILK-SYSFSNFSELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAV 112 (606)
T ss_dssp CTTSCCCEEC-TTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEEECT
T ss_pred CCCCCcCEeC-hhhccCCccCcEEeCCCCcc----cccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEEEcc
Confidence 4678887644 66888899999999999988 455566788889999999999988865566 78888899999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCccccc-ccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKG-ALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. ..+..++.+++|++|++++|.+.+ .+|. .+.++++|++|.+
T Consensus 113 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~L 160 (606)
T 3vq2_A 113 ETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDL 160 (606)
T ss_dssp TSCCCC-SSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEEC
T ss_pred CCcccc-ccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEc
Confidence 998887 434678888889999999888874 5677 7888888888875
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.67 E-value=1.1e-16 Score=112.69 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=36.1
Q ss_pred CCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccce
Q 037597 46 LPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAF 125 (130)
Q Consensus 46 l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~ 125 (130)
+++|+.|++++|.++ .+|. .+..+++|++|++++|.+.+ +|..++.+++|++|++++|.+.+.+|. .+..+++|+
T Consensus 182 l~~L~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~ 256 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLK 256 (328)
T ss_dssp STTCCEEEEEEECCC-CCCG-GGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCCCCC
T ss_pred CCCCCEEECcCCCcC-cchH-hhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHH-HhcCCCCCC
Confidence 333444444444433 3343 44444455555555555444 344444555555555555444444444 444444444
Q ss_pred eee
Q 037597 126 VIL 128 (130)
Q Consensus 126 ~l~ 128 (130)
+|.
T Consensus 257 ~L~ 259 (328)
T 4fcg_A 257 RLI 259 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=1.1e-15 Score=104.83 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=86.2
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++ .+.+..+++|++|++++|.+ .+..+..+..+++|+.|++++|.+++..+. .+..+++|++|+++
T Consensus 70 l~~n~l~~---~~~l~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 70 LGGNKLHD---ISALKELTNLTYLILTGNQL----QSLPNGVFDKLTNLKELVLVENQLQSLPDG-VFDKLTNLTYLNLA 141 (272)
T ss_dssp CTTSCCCC---CGGGTTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred CCCCCCCC---chhhcCCCCCCEEECCCCcc----CccChhHhcCCcCCCEEECCCCcCCccCHH-HhccCCCCCEEECC
Confidence 35677665 23677788888888888887 444445567788888888888888744444 57778888888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.+ ..+..++.+++|+.|++++|.+++..+. .+..+++|++|.+
T Consensus 142 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L 188 (272)
T 3rfs_A 142 HNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEG-VFDKLTQLKDLRL 188 (272)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEEC
T ss_pred CCccCc-cCHHHhccCccCCEEECCCCCcCccCHH-HhcCCccCCEEEC
Confidence 888887 4444567888888888888888844444 6777888887765
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=1e-15 Score=105.35 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=13.3
Q ss_pred hhcCCCCCEEeccCcccccccCcccccCcccceee
Q 037597 93 IASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVI 127 (130)
Q Consensus 93 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l 127 (130)
+..+++|+.|++++|.+.+..|. .+..+++|++|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L 206 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTL 206 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEE
T ss_pred hcCccccCEEECCCCcccccCHh-HccCcccccEe
Confidence 33344444444444444433333 33334444333
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=9.9e-16 Score=102.27 Aligned_cols=118 Identities=10% Similarity=0.163 Sum_probs=97.9
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.++. +|..+. +++++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+.++++|++|++++
T Consensus 19 ~~~~l~~--iP~~l~--~~l~~L~l~~n~i----~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 19 RGKGLTE--IPTNLP--ETITEIRLEQNTI----KVIPPGAFSPYKKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTSCCSS--CCSSCC--TTCCEEECCSSCC----CEECTTSSTTCTTCCEEECCSSCCCEECTT-TTTTCSSCCEEECCS
T ss_pred CCCCcCc--CCCccC--cCCCEEECCCCcC----CCcCHhHhhCCCCCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCC
Confidence 4566654 466554 7899999999999 444455788999999999999999966676 899999999999999
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
|.+.. ..+..+..+++|+.|++++|.+.+..|. .|..+++|++|.++
T Consensus 90 N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 90 NKITE-LPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLY 136 (220)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred CcCCc-cCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECC
Confidence 99998 3334578899999999999999966677 89999999998763
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=1.5e-15 Score=103.96 Aligned_cols=102 Identities=27% Similarity=0.382 Sum_probs=48.2
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.++... +..+..+++|++|++++|.+ ....+..+..+++|++|++++|.++...+. .+..+++|++|.+++
T Consensus 45 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l----~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 45 QSNKLSSLP-SKAFHRLTKLRLLYLNDNKL----QTLPAGIFKELKNLETLWVTDNKLQALPIG-VFDQLVNLAELRLDR 118 (270)
T ss_dssp CSSCCSCCC-TTSSSSCTTCCEEECCSSCC----SCCCTTTTSSCTTCCEEECCSSCCCCCCTT-TTTTCSSCCEEECCS
T ss_pred cCCCCCeeC-HHHhcCCCCCCEEECCCCcc----CeeChhhhcCCCCCCEEECCCCcCCcCCHh-HcccccCCCEEECCC
Confidence 455555422 44555666666666666665 222222334555555555555555522222 344444555555555
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccc
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
|.+.. ..+..+..+++|++|++++|.+.
T Consensus 119 n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 119 NQLKS-LPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccCe-eCHHHhCcCcCCCEEECCCCcCC
Confidence 54444 22223344444444444444444
No 25
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=7.8e-16 Score=105.50 Aligned_cols=121 Identities=19% Similarity=0.222 Sum_probs=91.9
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.++... +..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+..+++|++|.++
T Consensus 35 ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 35 LSFNPLRHLG-SYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAV 108 (276)
T ss_dssp CTTCCCCEEC-TTTTTTCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECT
T ss_pred CCCCcccccC-HhHhccccCCcEEECCCCcC----CccCHHHccCCcCCCEEECCCCccCccChh-hhcCCccccEEECC
Confidence 4677777644 55788888999999998888 344445678888899999999888855445 67888888888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCccccc-ccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKG-ALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. ..+..++.+++|++|++++|.+.+ .+|. .+..+++|++|.+
T Consensus 109 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~L 156 (276)
T 2z62_A 109 ETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDL 156 (276)
T ss_dssp TSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEEC
T ss_pred CCCccc-cCchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEEC
Confidence 888887 333367788888888888888874 2577 7788888887765
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=1.1e-15 Score=105.20 Aligned_cols=119 Identities=21% Similarity=0.247 Sum_probs=54.2
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCC-CCcccchHhhcCCCCCcEEEcc
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTN-FTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
++|.++... +..+..+++|++|++++|.+ ....+..+..+++|+.|++++|. ++...+. .+..+++|++|+++
T Consensus 40 ~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~-~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 40 HGNRISHVP-AASFRACRNLTILWLHSNVL----ARIDAAAFTGLALLEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLD 113 (285)
T ss_dssp TTSCCCEEC-TTTTTTCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSCTTCCCCCTT-TTTTCTTCCEEECT
T ss_pred eCCcCCccC-HHHcccCCCCCEEECCCCcc----ceeCHhhcCCccCCCEEeCCCCCCccccCHH-HhcCCcCCCEEECC
Confidence 344444422 34455555555555555555 23334444555555555555554 4322233 44444555555555
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~ 128 (130)
+|.+.. ..+..+..+++|++|++++|.+.+..+. .+..+++|++|.
T Consensus 114 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ 159 (285)
T 1ozn_A 114 RCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDD-TFRDLGNLTHLF 159 (285)
T ss_dssp TSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEE
T ss_pred CCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHh-HhccCCCccEEE
Confidence 554444 2233444444445555544444422222 344444444443
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=1.7e-15 Score=103.71 Aligned_cols=108 Identities=22% Similarity=0.266 Sum_probs=49.4
Q ss_pred cCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhh
Q 037597 15 YRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIA 94 (130)
Q Consensus 15 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 94 (130)
+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+++ ++...+..+++|+.|++++|.+.. ..+..+.
T Consensus 105 ~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~ 178 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQL----KSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKR-VPEGAFD 178 (270)
T ss_dssp TTTCSSCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC-CCTTTTT
T ss_pred cccccCCCEEECCCCcc----CeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcCcE-eChhHhc
Confidence 33444444444444444 22222334444455555555554442 222134445555555555555554 2223345
Q ss_pred cCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 95 SFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 95 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
.+++|+.|++++|.+. .+|...+..+++|+++.+
T Consensus 179 ~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 179 KLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp TCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred cCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEe
Confidence 5555555555555555 333324455555555543
No 28
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=6.8e-16 Score=109.77 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=89.6
Q ss_pred CCCCCCCCccCccccC-CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEc
Q 037597 1 MSANAIDNLVVPKDYR-GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 79 (130)
|++|.|+... +..+. .+++|++|++++|.+ ....+..+..+++|+.|++++|.++...+. .+..+++|+.|++
T Consensus 46 Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~i----~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L 119 (361)
T 2xot_A 46 LSHNNLSRLR-AEWTPTRLTNLHSLLLSHNHL----NFISSEAFVPVPNLRYLDLSSNHLHTLDEF-LFSDLQALEVLLL 119 (361)
T ss_dssp CCSSCCCEEC-TTSSSSCCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEEC
T ss_pred CCCCCCCccC-hhhhhhcccccCEEECCCCcC----CccChhhccCCCCCCEEECCCCcCCcCCHH-HhCCCcCCCEEEC
Confidence 4677777644 55566 788888888888888 344445678888888888888888744344 6778888888888
Q ss_pred cCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccc---cCcccceeeee
Q 037597 80 DESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGK---LRVSEAFVILI 129 (130)
Q Consensus 80 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~---~~l~~l~~l~~ 129 (130)
++|.+.. ..+..+..+++|+.|++++|.++ .+|...| ..+++|++|.+
T Consensus 120 ~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 120 YNNHIVV-VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CSSCCCE-ECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEEC
T ss_pred CCCcccE-ECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEEC
Confidence 8888887 55667888888888888888888 5665233 56777777765
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.7e-15 Score=105.00 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=64.9
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.++. +|..+..+++|++|++++|.+ +...+..+..+++|+.|++++|.+++ ++...+..+++|+.|++++
T Consensus 85 s~N~l~~--l~~~~~~l~~L~~L~l~~N~l----~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 85 SHNQLQS--LPLLGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CSSCCSS--CCCCTTTCTTCCEEECCSSCC----CCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTT
T ss_pred CCCcCCc--CchhhccCCCCCEEECCCCcC----cccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCC
Confidence 4455543 355555666666666666666 23333445566666666666666653 2321455566666666666
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
|.+.. ..+..+..+++|+.|++++|++. .+|. .+..+..|+++.+
T Consensus 158 N~l~~-l~~~~~~~l~~L~~L~L~~N~l~-~ip~-~~~~~~~L~~l~L 202 (290)
T 1p9a_G 158 NNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPK-GFFGSHLLPFAFL 202 (290)
T ss_dssp SCCSC-CCTTTTTTCTTCCEEECCSSCCC-CCCT-TTTTTCCCSEEEC
T ss_pred CcCCc-cCHHHhcCcCCCCEEECCCCcCC-ccCh-hhcccccCCeEEe
Confidence 66665 22223455666666666666666 5555 4444555555543
No 30
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=1.8e-15 Score=99.29 Aligned_cols=106 Identities=18% Similarity=0.306 Sum_probs=75.7
Q ss_pred cccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCC-CCCchhHH
Q 037597 13 KDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESD-LHVSQLLQ 91 (130)
Q Consensus 13 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~ 91 (130)
+.+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+..+++|++|++++|. +.. ++
T Consensus 82 ~~l~~l~~L~~L~l~~n~l----~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~--~~- 153 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITD--IM- 153 (197)
T ss_dssp GGGTTCTTCCEEEEECTTC----BGGGSCCCTTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCC--CG-
T ss_pred hhhhcCCCCCEEEeECCcc----CcccChhhcCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccc--cH-
Confidence 3667777777777777777 444566677777788888888877755555 67777788888888877 666 44
Q ss_pred hhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 92 SIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 92 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
.+..+++|+.|++++|.+. .++. +..+++|++|.+
T Consensus 154 ~l~~l~~L~~L~l~~n~i~-~~~~--l~~l~~L~~L~l 188 (197)
T 4ezg_A 154 PLKTLPELKSLNIQFDGVH-DYRG--IEDFPKLNQLYA 188 (197)
T ss_dssp GGGGCSSCCEEECTTBCCC-CCTT--GGGCSSCCEEEE
T ss_pred hhcCCCCCCEEECCCCCCc-ChHH--hccCCCCCEEEe
Confidence 5777788888888888777 4443 666777777765
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.65 E-value=2e-15 Score=109.62 Aligned_cols=122 Identities=25% Similarity=0.319 Sum_probs=100.2
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCch-hhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKA-LQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 79 (130)
|++|.+++.. |..+.++++|++|++++|.+ ...+ +..+..+++|++|++++|.+++..|. .+..+++|++|++
T Consensus 37 Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~~----~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L 110 (455)
T 3v47_A 37 LSLNSIAELN-ETSFSRLQDLQFLKVEQQTP----GLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGLANLEVLTL 110 (455)
T ss_dssp CCSSCCCEEC-TTTTSSCTTCCEEECCCCST----TCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTCTTCCEEEC
T ss_pred ecCCccCcCC-hhHhccCccccEEECcCCcc----cceECcccccccccCCEEeCCCCccCccChh-hccCcccCCEEeC
Confidence 5678888755 88899999999999999987 4444 45688899999999999999866566 7888999999999
Q ss_pred cCCCCCCchhHHh--hhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 80 DESDLHVSQLLQS--IASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 80 ~~n~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
++|.+.+ ..+.. ++.+++|++|++++|.+.+..|...+..+++|++|.+
T Consensus 111 ~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 111 TQCNLDG-AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp TTSCCBT-HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCCc-cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 9999987 55654 8889999999999999986667623788888888876
No 32
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=2.8e-15 Score=100.59 Aligned_cols=117 Identities=22% Similarity=0.214 Sum_probs=97.5
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
+++.+.. +|..+. +++++|++++|.+ ....+..+..+++|+.|++++|.++ .++...+..+++|+.|++++
T Consensus 27 ~~~~l~~--ip~~~~--~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 27 RSKRHAS--VPAGIP--TNAQILYLHDNQI----TKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTSCCSS--CCSCCC--TTCSEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cCCCcCc--cCCCCC--CCCCEEEcCCCcc----CccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence 3455544 465543 8999999999999 5666778899999999999999998 55542678999999999999
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
|.+.. ..+..+..+++|+.|++++|.+. .+|. .+..+++|++|.++
T Consensus 98 N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 98 NQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALD 143 (229)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECC
T ss_pred CcCCc-cChhHhCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECC
Confidence 99998 44456789999999999999999 8998 78999999998764
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=1.5e-15 Score=105.44 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=86.9
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCC-chhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGS-KALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
++|.+.+.. +..+..+++|++|++++|.+ .+ ..|..+..+++|+.|++++|.+++..+. .+..+++|++|+++
T Consensus 134 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 134 SHTHTRVAF-NGIFNGLSSLEVLKMAGNSF----QENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMS 207 (306)
T ss_dssp TTSCCEECS-TTTTTTCTTCCEEECTTCEE----GGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECT
T ss_pred CCCcCCccc-hhhcccCcCCCEEECCCCcc----ccccchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECC
Confidence 456665544 66677778888888888777 33 4566777788888888888888755455 67778888888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCc-ccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRV-SEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l-~~l~~l~~ 129 (130)
+|.+.+ ..+..+..+++|+.|++++|.+.+..|. .+..+ +.|+++.+
T Consensus 208 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~L~~L~L 255 (306)
T 2z66_A 208 HNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNL 255 (306)
T ss_dssp TSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSS-SCCCCCTTCCEEEC
T ss_pred CCccCc-cChhhccCcccCCEeECCCCCCcccCHH-HHHhhhccCCEEEc
Confidence 888877 3344677788888888888888866766 66666 37777765
No 34
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.2e-15 Score=99.96 Aligned_cols=107 Identities=15% Similarity=0.207 Sum_probs=92.9
Q ss_pred CCCCCCCCccCcc-ccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEc
Q 037597 1 MSANAIDNLVVPK-DYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 79 (130)
+++|.+++.. +. .+..+++|++|++++|.+ ++..|..+..+++|+.|++++|.+++..+. .+..+++|++|++
T Consensus 36 l~~n~i~~~~-~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L 109 (192)
T 1w8a_A 36 LNDNELGRIS-SDGLFGRLPHLVKLELKRNQL----TGIEPNAFEGASHIQELQLGENKIKEISNK-MFLGLHQLKTLNL 109 (192)
T ss_dssp CCSCCCCSBC-CSCSGGGCTTCCEEECCSSCC----CCBCTTTTTTCTTCCEEECCSCCCCEECSS-SSTTCTTCCEEEC
T ss_pred CCCCcCCccC-CccccccCCCCCEEECCCCCC----CCcCHhHcCCcccCCEEECCCCcCCccCHH-HhcCCCCCCEEEC
Confidence 5788888744 33 488999999999999999 566688899999999999999999965555 7889999999999
Q ss_pred cCCCCCCchhHHhhhcCCCCCEEeccCcccccccC
Q 037597 80 DESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALH 114 (130)
Q Consensus 80 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 114 (130)
++|.+.+ ..|..+..+++|+++++++|.+.+..+
T Consensus 110 ~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 110 YDNQISC-VMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSSCCCE-ECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCe-eCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999998 667889999999999999999886654
No 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=1.8e-15 Score=104.91 Aligned_cols=88 Identities=22% Similarity=0.241 Sum_probs=54.3
Q ss_pred hhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccc
Q 037597 39 ALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGK 118 (130)
Q Consensus 39 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 118 (130)
+|..+..+++|+.|++++|.+++..+. .+..+++|+.|.+++|.+.. ..+..+..+++|+.|++++|+++ .+|...|
T Consensus 92 l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 168 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPAGLL 168 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCS-CCCTTTT
T ss_pred CchhhccCCCCCEEECCCCcCcccCHH-HHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcCC-ccCHHHh
Confidence 444455566666666666666633333 56666677777777777666 33334566677777777777777 4544355
Q ss_pred cCcccceeeee
Q 037597 119 LRVSEAFVILI 129 (130)
Q Consensus 119 ~~l~~l~~l~~ 129 (130)
..+++|++|.+
T Consensus 169 ~~l~~L~~L~L 179 (290)
T 1p9a_G 169 NGLENLDTLLL 179 (290)
T ss_dssp TTCTTCCEEEC
T ss_pred cCcCCCCEEEC
Confidence 66777766654
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=111.18 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=86.6
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.+++.. |..|..+++|++|++++|.+ ....|..+..+++|+.|++++|.++ .++...+..+++|++|+++
T Consensus 39 L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 39 LGKNRIKTLN-QDEFASFPHLEELELNENIV----SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp CCSSCCCEEC-TTTTTTCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECT
T ss_pred CCCCccceEC-HhHccCCCCCCEEECCCCcc----CEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECC
Confidence 4667777644 66778888888888888887 4555667778888888888888877 4443256777788888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. ..+..+..+++|+.|++++|.+.+..|. .|..+++|++|.+
T Consensus 113 ~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l 159 (477)
T 2id5_A 113 ENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTL 159 (477)
T ss_dssp TSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEE
T ss_pred CCcccc-CChhHccccccCCEEECCCCccceeChh-hccCCCCCCEEEC
Confidence 887777 5556677777777777777777755555 6677777776654
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=1.3e-15 Score=112.85 Aligned_cols=123 Identities=19% Similarity=0.160 Sum_probs=83.2
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++.. |..+..+++|++|++++|.+ .+..|..+..+++|++|++++|.+++..+. .+..+++|++|+++
T Consensus 33 Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 33 LSFNKITYIG-HGDLRACANLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLKYLNLM 106 (549)
T ss_dssp CCSSCCCEEC-SSTTSSCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCCSCCHH-HHTTCTTCCEEECT
T ss_pred CcCCccCccC-hhhhhcCCcccEEECCCCCc----CccChhhccccccCCEEECCCCccCccCHH-HhccCCCCcEEECC
Confidence 4567776644 66777778888888888777 444556677777888888888877744444 57777778888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.....|..++.+++|++|++++|.+.+.+|...+..+++|++|.+
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 7777641134566777777777777776444555335666777776654
No 38
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=7.5e-15 Score=94.65 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=81.6
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.++. +|..+ .+++++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+..+++|+.|++++
T Consensus 15 ~~~~l~~--~p~~~--~~~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 15 NSKGLTS--VPTGI--PSSATRLELESNKL----QSLPHGVFDKLTQLTKLSLSQNQIQSLPDG-VFDKLTKLTILYLHE 85 (177)
T ss_dssp CSSCCSS--CCTTC--CTTCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred cCCCCcc--CCCCC--CCCCcEEEeCCCcc----cEeCHHHhcCcccccEEECCCCcceEeChh-HccCCCccCEEECCC
Confidence 3455554 35433 36788888888888 344444567788888888888888743333 567788888888888
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
|.+.. ..+..+..+++|+.|++++|.+. .+|...+..+++|+++.+
T Consensus 86 N~l~~-~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 86 NKLQS-LPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred CCccc-cCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEe
Confidence 88887 43445677888888888888888 455425677778877765
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=111.88 Aligned_cols=120 Identities=20% Similarity=0.256 Sum_probs=97.6
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++.. +..+.++++|++|++++|.+ ....+..+..+++|++|++++|.++...+. .+.++++|++|+++
T Consensus 35 Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 35 LSFNPLRHLG-SYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAV 108 (570)
T ss_dssp CCSCCCCEEC-TTTTTTCSSCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECT
T ss_pred ccCCccCccC-hhHhhCCCCceEEECCCCcC----CccCcccccCchhCCEEeCcCCcCCccCHh-hhcCcccccccccc
Confidence 4678887755 67889999999999999988 444556788899999999999998854445 78889999999999
Q ss_pred CCCCCCchhHH-hhhcCCCCCEEeccCccccc-ccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQ-SIASFTSLKYLSMQDSVLKG-ALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. ++. .++.+++|++|++++|.+.+ .+|. .++++++|++|.+
T Consensus 109 ~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l 156 (570)
T 2z63_A 109 ETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDL 156 (570)
T ss_dssp TSCCCC--STTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEEC
T ss_pred cccccc--CCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeC
Confidence 998887 443 68888999999999998885 4677 7888888888875
No 40
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.62 E-value=3e-15 Score=112.21 Aligned_cols=120 Identities=15% Similarity=0.120 Sum_probs=97.5
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++.. |..+.++++|++|++++|.+ ....|..+..+++|++|++++|.+++..|. .+..+++|++|+++
T Consensus 40 Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 40 FSFNVLPTIQ-NTTFSRLINLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFI 113 (606)
T ss_dssp CTTCCCSEEC-TTTSTTCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECT
T ss_pred ccCCccCcCC-hhHhccCccceEEECCCCcc----ceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEeecc
Confidence 4678888755 78899999999999999998 456677888999999999999998866666 78889999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccc-cCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGA-LHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. ..+..++.+++|++|++++|.+.+. +|. +..+++|++|.+
T Consensus 114 ~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 160 (606)
T 3t6q_A 114 QTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDF 160 (606)
T ss_dssp TSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCT--TCCCTTCCEEEC
T ss_pred ccCccc-CCcchhccCCcccEEECCCCcccccCccc--ccCCcccCEEEc
Confidence 999888 4466788899999999999988842 244 444788887765
No 41
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=2.8e-15 Score=98.31 Aligned_cols=115 Identities=15% Similarity=0.203 Sum_probs=97.2
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.++. +| .+..+++|++|++++|.+ ..++.+..+++|++|++++|.+++..+. .+..+++|++|++++
T Consensus 52 ~~n~i~~--l~-~l~~l~~L~~L~l~~n~~------~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 52 ANINVTD--LT-GIEYAHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISH 121 (197)
T ss_dssp ESSCCSC--CT-TGGGCTTCSEEEEESCCC------SCCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCEEECCS
T ss_pred cCCCccC--hH-HHhcCCCCCEEEccCCCC------CcchhhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCEEEecC
Confidence 5677774 36 688999999999999977 2334788899999999999999865676 788999999999999
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcc-cccccCcccccCcccceeeeeC
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSV-LKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
|.+.+ ..+..++.+++|++|++++|. +. .+|. +..+++|++|.++
T Consensus 122 n~i~~-~~~~~l~~l~~L~~L~L~~n~~i~-~~~~--l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 122 SAHDD-SILTKINTLPKVNSIDLSYNGAIT-DIMP--LKTLPELKSLNIQ 167 (197)
T ss_dssp SBCBG-GGHHHHTTCSSCCEEECCSCTBCC-CCGG--GGGCSSCCEEECT
T ss_pred CccCc-HhHHHHhhCCCCCEEEccCCCCcc-ccHh--hcCCCCCCEEECC
Confidence 99998 778889999999999999998 66 6764 7888888888763
No 42
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=99.70 Aligned_cols=107 Identities=19% Similarity=0.238 Sum_probs=93.4
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.|++.. +..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+..+++|+.|+++
T Consensus 64 L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 64 FSNNKITDIE-EGAFEGASGVNEILLTSNRL----ENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLY 137 (220)
T ss_dssp CCSSCCCEEC-TTTTTTCTTCCEEECCSSCC----CCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECT
T ss_pred CCCCcCCEEC-HHHhCCCCCCCEEECCCCcc----CccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECC
Confidence 5788888754 67899999999999999999 566666789999999999999999966666 89999999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccC
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALH 114 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 114 (130)
+|.+.. ..|..+..+++|+.+++++|++....+
T Consensus 138 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 138 DNQITT-VAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCC-BCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCE-ECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999 557889999999999999999875443
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.61 E-value=4.7e-15 Score=109.40 Aligned_cols=115 Identities=21% Similarity=0.158 Sum_probs=82.9
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.++. +|..+. +++++|++++|.+ .+..|..+..+++|++|++++|.+++..|. .+..+++|++|+++
T Consensus 7 ls~n~l~~--ip~~~~--~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 7 RSKNGLIH--VPKDLS--QKTTILNISQNYI----SELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLS 77 (520)
T ss_dssp CTTSCCSS--CCCSCC--TTCSEEECCSSCC----CCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECC
T ss_pred cCCCCccc--cccccc--ccccEEECCCCcc----cccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecC
Confidence 46677764 366554 7788888888877 455556777788888888888887755565 77777888888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCccccc-ccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKG-ALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. +|.. .+++|++|++++|.+.+ .+|. .++++++|++|.+
T Consensus 78 ~N~l~~--lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L 122 (520)
T 2z7x_B 78 HNKLVK--ISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGL 122 (520)
T ss_dssp SSCCCE--EECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEE
T ss_pred CCceee--cCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEe
Confidence 887776 5554 67778888888887775 3566 6777777777765
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=6.4e-16 Score=117.09 Aligned_cols=110 Identities=14% Similarity=0.211 Sum_probs=95.7
Q ss_pred cCccccC--CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCC-CCc-ccchHhhcCC------CCCcEEEc
Q 037597 10 VVPKDYR--GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTN-FTG-TVINQELHNL------TNLEELIL 79 (130)
Q Consensus 10 ~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~-~~~~~~~~~l------~~L~~L~l 79 (130)
+ |+.++ .+++|++|++++|.+ .+.+|..++.+++|+.|++++|. +++ .+|. .+..+ ++|++|++
T Consensus 239 i-p~~l~~~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L 312 (636)
T 4eco_A 239 K-TEDLKWDNLKDLTDVEVYNCPN----LTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYI 312 (636)
T ss_dssp T-TSCCCGGGCTTCCEEEEECCTT----CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEEC
T ss_pred C-chhhhhcccCCCCEEEecCCcC----CccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEEC
Confidence 5 88888 999999999999998 67889999999999999999998 887 6787 67665 88999999
Q ss_pred cCCCCCCchhHH--hhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 80 DESDLHVSQLLQ--SIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 80 ~~n~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
++|.+.. +|. .++.+++|++|++++|.+.|.+| .+..+++|++|.+
T Consensus 313 ~~n~l~~--ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L 360 (636)
T 4eco_A 313 GYNNLKT--FPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNL 360 (636)
T ss_dssp CSSCCSS--CCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEEC
T ss_pred CCCcCCc--cCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEEC
Confidence 9999987 787 89999999999999999998888 4777888877765
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.60 E-value=3.3e-15 Score=111.93 Aligned_cols=119 Identities=17% Similarity=0.115 Sum_probs=81.5
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCC-chhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGS-KALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
++|.+.+.. |..+..+++|++|++++|.+ .+ ..|..++.+++|+.|++++|.+++..+. .+..+++|++|+++
T Consensus 432 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 432 SYTNTKIDF-DGIFLGLTSLNTLKMAGNSF----KDNTLSNVFANTTNLTFLDLSKCQLEQISWG-VFDTLHRLQLLNMS 505 (606)
T ss_dssp TTSCCEECC-TTTTTTCTTCCEEECTTCEE----GGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECC
T ss_pred cCCCCCccc-hhhhcCCCCCCEEECCCCcC----CCcchHHhhccCCCCCEEECCCCcCCccChh-hhcccccCCEEECC
Confidence 455555544 66667777777777777776 33 2556667777777777777777755555 67777777777777
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcc-cceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVS-EAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~-~l~~l~~ 129 (130)
+|.+.+ ..|..+..+++|+.|++++|+++ .+|. .+..+. +|+++.+
T Consensus 506 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~-~~p~-~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 506 HNNLLF-LDSSHYNQLYSLSTLDCSFNRIE-TSKG-ILQHFPKSLAFFNL 552 (606)
T ss_dssp SSCCSC-EEGGGTTTCTTCCEEECTTSCCC-CEES-CGGGSCTTCCEEEC
T ss_pred CCcCCC-cCHHHccCCCcCCEEECCCCcCc-ccCH-hHhhhcccCcEEEc
Confidence 777777 55667777777777777777777 6776 566664 4666654
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=3.2e-15 Score=113.39 Aligned_cols=121 Identities=18% Similarity=0.255 Sum_probs=90.2
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++.. +..+.++++|++|++++|.+ .+..|..++.+++|++|++++|.++ .++...+..+++|++|+++
T Consensus 32 Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 32 LTHNQLRRLP-AANFTRYSQLTSLDVGFNTI----SKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp CCSSCCCCCC-GGGGGGGTTCSEEECCSSCC----CCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECC
T ss_pred CCCCCCCCcC-HHHHhCCCcCcEEECCCCcc----CccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECC
Confidence 4667777644 55678888888888888887 4555667777888888888888887 4444257788888888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.+ ..+..++.+++|++|++++|.+.+..|. .+.++++|++|.+
T Consensus 106 ~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L 152 (680)
T 1ziw_A 106 SNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLL 152 (680)
T ss_dssp SSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEEC
T ss_pred CCccCc-cChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEc
Confidence 888877 4445678888888888888888866666 6777888877765
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.60 E-value=4.8e-15 Score=110.86 Aligned_cols=121 Identities=15% Similarity=0.123 Sum_probs=100.9
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
+.|.+.... +..+..++++++|++++|... ....|..+..+++|+.|++++|.+++..|. .+.++++|++|++++
T Consensus 453 s~n~l~~~~-~~~~~~~~~L~~L~Ls~N~~~---~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~-~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 453 SHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSH 527 (635)
T ss_dssp TTSCCEECC-TTTTTTCTTCCEEECTTCEEG---GGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTT
T ss_pred ccccccccc-ccccccchhhhhhhhhhcccc---cccCchhhhhccccCEEECCCCccCCcChH-HHcCCCCCCEEECCC
Confidence 466666655 778888999999999998751 234667788999999999999999966666 899999999999999
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCc-ccceeeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRV-SEAFVILI 129 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l-~~l~~l~~ 129 (130)
|.+.+ ..+..+..+++|++|++++|++++..|. .+..+ ++|++|.+
T Consensus 528 N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 528 NNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNL 574 (635)
T ss_dssp SCCCB-CCCGGGTTCTTCCEEECTTSCCCBCCSS-CTTCCCTTCCEEEC
T ss_pred CcCCC-CChhHHhCCCCCCEEECCCCcCCCCCHH-HHHhhhCcCCEEEe
Confidence 99998 5566789999999999999999977777 78777 67888875
No 48
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.60 E-value=3.5e-16 Score=118.49 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=83.0
Q ss_pred CCCCCCccCccccCCCCCCcEEEcCCcccccccCCc-----------------hhhhcC--CCCCCCEEeccCCCCCccc
Q 037597 3 ANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSK-----------------ALQSIG--SLPSLKTLYLSYTNFTGTV 63 (130)
Q Consensus 3 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-----------------~~~~~~--~l~~L~~l~l~~~~~~~~~ 63 (130)
+|.+++ + |+.++.+++|++|++++|.+ .+. +|+.++ .+++|++|++++|.+.+.+
T Consensus 192 ~n~l~~-i-p~~l~~l~~L~~L~Ls~n~l----~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~ 265 (636)
T 4eco_A 192 SNNITF-V-SKAVMRLTKLRQFYMGNSPF----VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265 (636)
T ss_dssp SCEEEE-E-CGGGGGCTTCCEEEEESCCC----CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC
T ss_pred cCCCcc-C-CHHHhcccCCCEEECcCCcc----ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC
Confidence 455666 4 66777777777777777777 343 677777 7777777777777777677
Q ss_pred chHhhcCCCCCcEEEccCCC-CCCchhHHhhhcC------CCCCEEeccCcccccccCc-ccccCcccceeeee
Q 037597 64 INQELHNLTNLEELILDESD-LHVSQLLQSIASF------TSLKYLSMQDSVLKGALHG-QGKLRVSEAFVILI 129 (130)
Q Consensus 64 ~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~------~~L~~L~l~~n~l~~~~p~-~~~~~l~~l~~l~~ 129 (130)
|. .+..+++|++|++++|. +++..+|..++.+ ++|++|++++|.++ .+|. ..+.++++|++|.+
T Consensus 266 p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 266 PT-FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp CT-TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEEC
T ss_pred hH-HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeC
Confidence 76 77777777777777776 5531356666665 77777777777777 6665 34677777777765
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.60 E-value=6.1e-15 Score=107.47 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=77.8
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.+++.. |..|..+++|++|++++|.+ ....+..+..+++|+.|++++|.++ .++...+..+++|++|+++
T Consensus 82 L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 82 LMENNIQMIQ-ADTFRHLHHLEVLQLGRNSI----RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp CCSSCCCEEC-TTTTTTCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECC
T ss_pred CcCCcCceEC-HHHcCCCCCCCEEECCCCcc----CCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECC
Confidence 4567776644 66777788888888888877 4445566777778888888888777 3343256777778888887
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. ..+..+..+++|+.|++++|...+.++...|..+++|++|.+
T Consensus 156 ~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 156 NNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp SCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 777776 333355566666666666532222444434555555555543
No 50
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=4.1e-15 Score=111.55 Aligned_cols=116 Identities=20% Similarity=0.192 Sum_probs=98.0
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.+++ +|. +..+++|++|++++|.+ ..+|..++.+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus 448 Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l-----~~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 448 LAHKDLTV--LCH-LEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQELLLC 516 (567)
T ss_dssp CTTSCCSS--CCC-GGGGTTCCEEECCSSCC-----CCCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECC
T ss_pred ecCCCCCC--CcC-ccccccCcEeecCcccc-----cccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEECC
Confidence 57899987 475 99999999999999999 3788899999999999999999984 56 58999999999999
Q ss_pred CCCCCCchh-HHhhhcCCCCCEEeccCcccccccCc--ccccCcccceeee
Q 037597 81 ESDLHVSQL-LQSIASFTSLKYLSMQDSVLKGALHG--QGKLRVSEAFVIL 128 (130)
Q Consensus 81 ~n~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~~l~~l~~l~ 128 (130)
+|.+.+ .. |..++.+++|+.|++++|++++..|. ..+..+++|++|.
T Consensus 517 ~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCC-CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 999998 43 88999999999999999999955554 1233467777664
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.60 E-value=5.1e-15 Score=104.68 Aligned_cols=120 Identities=22% Similarity=0.211 Sum_probs=74.8
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.++... +..+..+++|++|++++|.+ .+..+..+..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus 59 l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 59 LSNNRITYIS-NSDLQRCVNLQALVLTSNGI----NTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CTTSCCCEEC-TTTTTTCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECT
T ss_pred CCCCcCcccC-HHHhccCCCCCEEECCCCcc----CccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECC
Confidence 3556665532 44667777777777777777 3444455667777777777777776 3444246677777777777
Q ss_pred CCCCCCchhHH--hhhcCCCCCEEeccCc-ccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQ--SIASFTSLKYLSMQDS-VLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~--~~~~~~~L~~L~l~~n-~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. +|. .+..+++|++|++++| .+....|. .+..+++|+++.+
T Consensus 133 ~n~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l 181 (353)
T 2z80_A 133 GNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGLTFLEELEI 181 (353)
T ss_dssp TCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEE
T ss_pred CCCCcc--cCchhhhccCCCCcEEECCCCccccccCHH-HccCCCCCCEEEC
Confidence 777766 443 5666777777777766 34422233 5666666666654
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.60 E-value=3.8e-15 Score=103.38 Aligned_cols=121 Identities=18% Similarity=0.119 Sum_probs=83.5
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCc-ccchHhhcCCCCCcEEEcc
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTG-TVINQELHNLTNLEELILD 80 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~ 80 (130)
++|.++.......+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+++ ..|. .+..+++|++|+++
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLS 183 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCC----EECSTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECT
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcC----CccchhhcccCcCCCEEECCCCccccccchh-HHhhCcCCCEEECC
Confidence 445555422114566677777777777776 34455566777778888888777764 3555 67777888888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.+ ..|..+..+++|+.|++++|.+.+..+. .+..+++|++|.+
T Consensus 184 ~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L 230 (306)
T 2z66_A 184 QCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDY 230 (306)
T ss_dssp TSCCCE-ECTTTTTTCTTCCEEECTTSCCSBCCSG-GGTTCTTCCEEEC
T ss_pred CCCcCC-cCHHHhcCCCCCCEEECCCCccCccChh-hccCcccCCEeEC
Confidence 888877 4466777888888888888888844444 6777778877765
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.59 E-value=8.8e-15 Score=106.32 Aligned_cols=122 Identities=18% Similarity=0.203 Sum_probs=77.5
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.++... +..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.++...+. .+..+++|++|+++
T Consensus 71 L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 71 LHENQIQIIK-VNSFKHLRHLEILQLSRNHI----RTIEIGAFNGLANLNTLELFDNRLTTIPNG-AFVYLSKLKELWLR 144 (440)
T ss_dssp CCSCCCCEEC-TTTTSSCSSCCEEECCSSCC----CEECGGGGTTCSSCCEEECCSSCCSSCCTT-TSCSCSSCCEEECC
T ss_pred ccCCcCCeeC-HHHhhCCCCCCEEECCCCcC----CccChhhccCCccCCEEECCCCcCCeeCHh-HhhccccCceeeCC
Confidence 4567776644 66777778888888888777 344456677777788888877777733333 56777777777777
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. ..+..+..+++|+.|++++|...+.++...|..+++|++|.+
T Consensus 145 ~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 145 NNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp SCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred CCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence 777776 333355666666666666533222444434555555555543
No 54
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=2.1e-15 Score=115.86 Aligned_cols=109 Identities=21% Similarity=0.198 Sum_probs=92.3
Q ss_pred CccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhH
Q 037597 11 VPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLL 90 (130)
Q Consensus 11 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 90 (130)
+|+.+..++.|+.|++++|.+ ..+|..+..+++|+.|++++|.++ .+|. .+..+++|++|+|++|.+.. +|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l-----~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~--lp 286 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQI-----FNISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLTS--LP 286 (727)
T ss_dssp ------CCCCCCEEECTTSCC-----SCCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCSS--CC
T ss_pred ChhhhccCCCCcEEECCCCCC-----CCCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCCc--cC
Confidence 477788899999999999998 467777778999999999999998 7888 88999999999999999997 78
Q ss_pred HhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 91 QSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 91 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
..++.+++|++|++++|.++ .+|. .++++++|++|.+.
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~-~lp~-~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVT-TLPW-EFGNLCNLQFLGVE 324 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCC-CCCS-STTSCTTCCCEECT
T ss_pred hhhcCCCCCCEEECCCCCCC-ccCh-hhhcCCCccEEeCC
Confidence 88999999999999999998 8898 79999999988763
No 55
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=6.5e-15 Score=94.99 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=92.6
Q ss_pred CCCCCCCCccCccccCCC-CCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEc
Q 037597 1 MSANAIDNLVVPKDYRGL-RKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 79 (130)
+++|.++. +|. +..+ ++|++|++++|.+ .+ + +.+..+++|+++++++|.++ .+++..+..+++|++|++
T Consensus 26 l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l----~~-~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 26 LRGYKIPV--IEN-LGATLDQFDAIDFSDNEI----RK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCCCS--CCC-GGGGTTCCSEEECCSSCC----CE-E-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEEC
T ss_pred eeCCCCch--hHH-hhhcCCCCCEEECCCCCC----Cc-c-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEEC
Confidence 46788875 354 4554 4999999999999 33 3 67888999999999999998 455425588999999999
Q ss_pred cCCCCCCchhHH--hhhcCCCCCEEeccCcccccccCcc---cccCcccceeeee
Q 037597 80 DESDLHVSQLLQ--SIASFTSLKYLSMQDSVLKGALHGQ---GKLRVSEAFVILI 129 (130)
Q Consensus 80 ~~n~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~p~~---~~~~l~~l~~l~~ 129 (130)
++|.+.. +|. .++.+++|+.+++++|++. .+|.. .+..+++|+++.+
T Consensus 96 ~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 96 TNNSLVE--LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CSCCCCC--GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred CCCcCCc--chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence 9999987 666 7889999999999999998 77761 2778888887754
No 56
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.58 E-value=4.5e-15 Score=108.58 Aligned_cols=119 Identities=19% Similarity=0.267 Sum_probs=68.9
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.+++.. |..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+..+++|++|.++
T Consensus 63 L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 63 LNENIVSAVE-PGAFNNLFNLRTLGLRSNRL----KLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVG 136 (477)
T ss_dssp CTTSCCCEEC-TTTTTTCTTCCEEECCSSCC----CSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEEC
T ss_pred CCCCccCEeC-hhhhhCCccCCEEECCCCcC----CccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECC
Confidence 3566666644 66777777777777777777 333333456677777777777776644444 55666666666666
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVI 127 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l 127 (130)
+|.+.. ..+..+..+++|+.|++++|.+. .+|...+..+++|++|
T Consensus 137 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 137 DNDLVY-ISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVL 181 (477)
T ss_dssp CTTCCE-ECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEE
T ss_pred CCccce-eChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEE
Confidence 666555 33445555555555555555555 2222134444444444
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.58 E-value=3.7e-15 Score=115.94 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=94.0
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCch-hhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKA-LQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 79 (130)
|++|.|+... |..+..+++|++|++++|.. ...+ |..+..+++|++|++++|.+++..|. .+..+++|++|++
T Consensus 31 Ls~N~i~~i~-~~~~~~l~~L~~LdLs~n~~----~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L 104 (844)
T 3j0a_A 31 LSFNYIRTVT-ASSFPFLEQLQLLELGSQYT----PLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFHLFELRL 104 (844)
T ss_dssp EESCCCCEEC-SSSCSSCCSCSEEEECTTCC----CCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSSCCCEEC
T ss_pred CCCCcCCccC-hhHCcccccCeEEeCCCCCC----ccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcccCEeeC
Confidence 3678887755 77888888888888888854 2444 66788888899999988888866676 7888888888888
Q ss_pred cCCCCCCchhHHh--hhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 80 DESDLHVSQLLQS--IASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 80 ~~n~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
++|.+.+ ..|.. ++.+++|++|++++|.+.+..+...+.++++|++|.+
T Consensus 105 s~n~l~~-~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 105 YFCGLSD-AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp TTCCCSS-CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred cCCCCCc-ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 8888876 44544 7788888888888888875544336788888888765
No 58
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=95.50 Aligned_cols=102 Identities=23% Similarity=0.324 Sum_probs=88.5
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.|+. +|..+..+++|++|++++|.+ +...+..+..+++|+.|++++|.+++..+. .+..+++|+.|+++
T Consensus 38 L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i----~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 38 LDGNQFTL--VPKELSNYKHLTLIDLSNNRI----STLSNQSFSNMTQLLTLILSYNRLRCIPPR-TFDGLKSLRLLSLH 110 (193)
T ss_dssp CCSSCCCS--CCGGGGGCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECC
T ss_pred CCCCcCch--hHHHhhcccCCCEEECCCCcC----CEeCHhHccCCCCCCEEECCCCccCEeCHH-HhCCCCCCCEEECC
Confidence 47888875 488999999999999999999 555666789999999999999999965555 79999999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccc
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
+|.+.. ..+..+..+++|+.+++++|++.
T Consensus 111 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISV-VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCB-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCe-eChhhhhcCccccEEEeCCCCee
Confidence 999998 43446889999999999999876
No 59
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.4e-14 Score=93.33 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=88.3
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++.. +..+..+++|++|++++|.+ +...+..+..+++|+.+++++|.+++..+. .+..+++|+.|+++
T Consensus 35 l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 35 LESNKLQSLP-HGVFDKLTQLTKLSLSQNQI----QSLPDGVFDKLTKLTILYLHENKLQSLPNG-VFDKLTQLKELALD 108 (177)
T ss_dssp CCSSCCCCCC-TTTTTTCTTCSEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred eCCCcccEeC-HHHhcCcccccEEECCCCcc----eEeChhHccCCCccCEEECCCCCccccCHH-HhhCCcccCEEECc
Confidence 4678888643 66778999999999999999 444445578999999999999999954444 67889999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccC
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALH 114 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 114 (130)
+|.+.. ..+..+..+++|+.+++++|++.+..|
T Consensus 109 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 109 TNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcceE-eCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998 433456889999999999999987665
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=2.1e-14 Score=105.96 Aligned_cols=122 Identities=18% Similarity=0.179 Sum_probs=77.0
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCC--chhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEE
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGS--KALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELI 78 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ 78 (130)
+++|.+++.. |..+..+++|++|++++|.+ .+ ..|..++.+++|+.|++++|.+++.+|...+..+++|++|+
T Consensus 331 Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l----~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 331 FSNNLLTDTV-FENCGHLTELETLILQMNQL----KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CCSSCCCTTT-TTTCCCCSSCCEEECCSSCC----CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred eECCccChhh-hhhhccCCCCCEEEccCCcc----CccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 4677777655 77788888888888888888 33 45566778888888888888887545541244444444444
Q ss_pred ccCCCCCCch---------------------hHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 79 LDESDLHVSQ---------------------LLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 79 l~~n~~~~~~---------------------~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+++|.+.+ . +|..+..+++|++|++++|+++ .+|...+..+++|+++.+
T Consensus 406 Ls~N~l~~-~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 406 MSSNILTD-TIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp CCSSCCCG-GGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CcCCCCCc-chhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence 44444433 2 4454556666666666666666 555523556666666554
No 61
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=4.4e-14 Score=93.14 Aligned_cols=117 Identities=20% Similarity=0.177 Sum_probs=92.6
Q ss_pred CCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCC
Q 037597 3 ANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDES 82 (130)
Q Consensus 3 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 82 (130)
++.++. +|..+ .+++++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+..+++|++|++++|
T Consensus 16 ~~~l~~--~p~~~--~~~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 16 SQGRTS--VPTGI--PAQTTYLDLETNSL----KSLPNGVFDELTSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTN 86 (208)
T ss_dssp SSCCSS--CCSCC--CTTCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred CCCccC--CCCCC--CCCCcEEEcCCCcc----CcCChhhhcccccCcEEECCCCccCccChh-hcCCCCCcCEEECCCC
Confidence 344443 35443 56899999999999 444455678999999999999999844344 6788999999999999
Q ss_pred CCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 83 DLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
.+.. ..+..+..+++|++|++++|.+.+..+. .+..+++|++|.++
T Consensus 87 ~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 87 QLQS-LPNGVFDKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLY 132 (208)
T ss_dssp CCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred cCCc-cCHhHhcCccCCCEEEcCCCcCcccCHh-HhccCCcCCEEECC
Confidence 9998 4445678999999999999999944444 68889999998763
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=9.8e-15 Score=99.99 Aligned_cols=118 Identities=22% Similarity=0.276 Sum_probs=81.3
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.++... +..+..+++|++|++++|.+ ....+..+..+++|+.+++++|.+++..+. .+..+++|++|+++
T Consensus 59 l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 59 LSRCEIQTIE-DGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVA 132 (276)
T ss_dssp CTTCCCCEEC-TTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECC
T ss_pred CCCCcCCccC-HHHccCCcCCCEEECCCCcc----CccChhhhcCCccccEEECCCCCccccCch-hcccCCCCCEEECc
Confidence 4567776543 56778888888888888888 444456677788888888888887744443 56777788888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccce
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAF 125 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~ 125 (130)
+|.+....+|..++.+++|++|++++|++.+..+. .+..++.++
T Consensus 133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~ 176 (276)
T 2z62_A 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMP 176 (276)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTCT
T ss_pred CCccceecCchhhccCCCCCEEECCCCCCCcCCHH-Hhhhhhhcc
Confidence 88776512466777788888888888877744333 454444443
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.57 E-value=7.3e-15 Score=109.14 Aligned_cols=122 Identities=21% Similarity=0.201 Sum_probs=89.5
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCC-cccchHhhcCCCCCcEEEcc
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT-GTVINQELHNLTNLEELILD 80 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~l~~L~~L~l~ 80 (130)
++|.+.+..++..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.++ +.+|. .+..+++|+.|+++
T Consensus 404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLS 478 (570)
T ss_dssp TTSEEESCTTSCTTTTCTTCCEEECTTSCC----EECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECT
T ss_pred cCCccccccchhhhhcCCCCCEEeCcCCcc----cccchhhhhcCCcCcEEECcCCcCccccchh-hhhcccCCCEEECC
Confidence 455555533224567777788888887777 4555666777888888888888876 45666 77788888888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
+|.+.+ ..|..+..+++|+.|++++|++++..|. .+.++++|+++.++
T Consensus 479 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 479 QCQLEQ-LSPTAFNSLSSLQVLNMASNQLKSVPDG-IFDRLTSLQKIWLH 526 (570)
T ss_dssp TSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECC
T ss_pred CCcccc-CChhhhhcccCCCEEeCCCCcCCCCCHH-HhhcccCCcEEEec
Confidence 888887 5577788888888888888888855555 67888888887653
No 64
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=6.8e-15 Score=104.62 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=92.7
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.|+... +..|..+++|++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+..+++|+.|+++
T Consensus 71 L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 71 LSHNHLNFIS-SEAFVPVPNLRYLDLSSNHL----HTLDEFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLS 144 (361)
T ss_dssp CCSSCCCEEC-TTTTTTCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECC
T ss_pred CCCCcCCccC-hhhccCCCCCCEEECCCCcC----CcCCHHHhCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECC
Confidence 5788888755 77899999999999999999 444455688999999999999999955566 89999999999999
Q ss_pred CCCCCCchhHHh-h---hcCCCCCEEeccCcccccccCcccccCccc
Q 037597 81 ESDLHVSQLLQS-I---ASFTSLKYLSMQDSVLKGALHGQGKLRVSE 123 (130)
Q Consensus 81 ~n~~~~~~~~~~-~---~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~ 123 (130)
+|.+.. +|.. + ..+++|+.|++++|.+. .+|...+..++.
T Consensus 145 ~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 188 (361)
T 2xot_A 145 QNQISR--FPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPA 188 (361)
T ss_dssp SSCCCS--CCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCH
T ss_pred CCcCCe--eCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccH
Confidence 999998 5654 3 57899999999999999 666425555544
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=6.1e-15 Score=110.90 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=61.8
Q ss_pred ccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHH-h
Q 037597 14 DYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQ-S 92 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~ 92 (130)
.+..+++|++|++++|.+ .+..+..++.+++|+.|++++|.+++..+. .+..+++|++|++++|.+.. +|. .
T Consensus 70 ~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~--l~~~~ 142 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSS--LPRGI 142 (597)
T ss_dssp HHHHCCCCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCC--CCTTT
T ss_pred HHccCCCCcEEECCCCCC----CCCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEeeCCCCCC--CCHHH
Confidence 345566666666666666 333334556666666666666666543333 45566666666666666665 333 3
Q ss_pred hhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 93 IASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 93 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
++.+++|++|++++|.+.+..|. .+..+++|++|.+
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L 178 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQL 178 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEEC
T ss_pred hccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEEC
Confidence 45666666666666666644444 5566666665544
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=8.2e-15 Score=108.04 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=91.6
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcC-CCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIG-SLPSLKTLYLSYTNFTGTVINQELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 79 (130)
+++|.+++.. |..+..+++|++|++++|.+ .+..|..+. .+++|+.|++++|.+++ .+. ...+++|+.|++
T Consensus 127 L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l----~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~L~L 198 (487)
T 3oja_A 127 LANNKITMLR-DLDEGCRSRVQYLDLKLNEI----DTVNFAELAASSDTLEHLNLQYNFIYD-VKG--QVVFAKLKTLDL 198 (487)
T ss_dssp CCSSCCCSGG-GBCGGGGSSEEEEECTTSCC----CEEEGGGGGGGTTTCCEEECTTSCCCE-EEC--CCCCTTCCEEEC
T ss_pred CCCCCCCCCC-chhhcCCCCCCEEECCCCCC----CCcChHHHhhhCCcccEEecCCCcccc-ccc--cccCCCCCEEEC
Confidence 4677777755 76778888888888888888 455566654 68888888888888873 343 446788999999
Q ss_pred cCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 80 DESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 80 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
++|.+.+ +|..+..+++|+.|++++|.++ .+|. .+..++.|+++.+
T Consensus 199 s~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~l~~l~~L~~L~l 244 (487)
T 3oja_A 199 SSNKLAF--MGPEFQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEHFDL 244 (487)
T ss_dssp CSSCCCE--ECGGGGGGTTCSEEECTTSCCC-EECT-TCCCCTTCCEEEC
T ss_pred CCCCCCC--CCHhHcCCCCccEEEecCCcCc-ccch-hhccCCCCCEEEc
Confidence 9999888 6666888899999999999998 5787 6788888888765
No 67
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.57 E-value=4.4e-14 Score=98.96 Aligned_cols=118 Identities=19% Similarity=0.313 Sum_probs=86.0
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++.. +..+..+++|++|++++|.+ ....|..+..+++|++|++++|.++ .+|. .+. ++|++|.++
T Consensus 59 L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~--~~L~~L~l~ 129 (330)
T 1xku_A 59 LQNNKITEIK-DGDFKNLKNLHTLILINNKI----SKISPGAFAPLVKLERLYLSKNQLK-ELPE-KMP--KTLQELRVH 129 (330)
T ss_dssp CCSSCCCCBC-TTTTTTCTTCCEEECCSSCC----CCBCTTTTTTCTTCCEEECCSSCCS-BCCS-SCC--TTCCEEECC
T ss_pred CCCCcCCEeC-hhhhccCCCCCEEECCCCcC----CeeCHHHhcCCCCCCEEECCCCcCC-ccCh-hhc--ccccEEECC
Confidence 4677777644 55788888999999998888 4555777888888999998888887 5555 332 577788888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCccccc--ccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKG--ALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. ..+..+..+++|+.|++++|.+.. ..+. .+..+++|+++.+
T Consensus 130 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l 178 (330)
T 1xku_A 130 ENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRI 178 (330)
T ss_dssp SSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEEC
T ss_pred CCcccc-cCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCEEEC
Confidence 887777 445567778888888888877752 3444 6677777776654
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=1e-14 Score=101.90 Aligned_cols=118 Identities=18% Similarity=0.174 Sum_probs=92.3
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhc-CCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSI-GSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 79 (130)
+++|.+++.. +..+..+++|++|++++|.+ ....+..+ ..+++|+.|++++|.++ ..+. ...+++|++|++
T Consensus 127 l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~--~~~l~~L~~L~L 198 (317)
T 3o53_A 127 LANNKITMLR-DLDEGCRSRVQYLDLKLNEI----DTVNFAELAASSDTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDL 198 (317)
T ss_dssp CCSSCCCSGG-GBCTGGGSSEEEEECTTSCC----CEEEGGGGGGGTTTCCEEECTTSCCC-EEEC--CCCCTTCCEEEC
T ss_pred CCCCCCCCcc-chhhhccCCCCEEECCCCCC----CcccHHHHhhccCcCCEEECCCCcCc-cccc--ccccccCCEEEC
Confidence 4567777644 66778888899999988888 44444544 46788999999999887 4444 445788999999
Q ss_pred cCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 80 DESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 80 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
++|.+.+ +|..+..+++|+.|++++|.+. .+|. .+..+++|+++.+.
T Consensus 199 s~N~l~~--l~~~~~~l~~L~~L~L~~N~l~-~l~~-~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 199 SSNKLAF--MGPEFQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEHFDLR 245 (317)
T ss_dssp CSSCCCE--ECGGGGGGTTCSEEECTTSCCC-EECT-TCCCCTTCCEEECT
T ss_pred CCCcCCc--chhhhcccCcccEEECcCCccc-chhh-HhhcCCCCCEEEcc
Confidence 9999988 6667888999999999999998 7888 78888888888763
No 69
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=3.2e-14 Score=91.48 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=84.3
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.++. +|..+ .+++++|++++|.+ ....|..+..+++|+.|++++|.+++ ++...+..+++|++|+++
T Consensus 16 ~s~n~l~~--ip~~~--~~~l~~L~L~~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 16 CSGKSLAS--VPTGI--PTTTQVLYLYDNQI----TKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp CTTSCCSS--CCSCC--CTTCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred eCCCCcCc--cCccC--CCCCcEEEcCCCcC----CccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECC
Confidence 36777776 47665 48899999999999 55567788999999999999999984 444267899999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCccccccc
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGAL 113 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 113 (130)
+|.+.. ..+..+..+++|+.|++++|++....
T Consensus 87 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCE-eCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999998 44446889999999999999887443
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.56 E-value=3.3e-14 Score=105.39 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=98.7
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.++. +|+.+. +++++|++++|.+ ++..|..+..+++|++|++++|.+++..+. .+..+++|++|++++
T Consensus 13 ~~~~l~~--ip~~~~--~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 13 RSRSFTS--IPSGLT--AAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLSD 83 (549)
T ss_dssp TTSCCSS--CCSCCC--TTCCEEECCSSCC----CEECSSTTSSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTT
T ss_pred CCCcccc--ccccCC--CCccEEECcCCcc----CccChhhhhcCCcccEEECCCCCcCccChh-hccccccCCEEECCC
Confidence 4566664 476554 7999999999999 455667899999999999999999966556 899999999999999
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCccccc-ccCcccccCcccceeeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKG-ALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~l~~l~~l~~ 129 (130)
|.+.+ ..+..++.+++|++|++++|.+.+ .+|. .+.++++|++|.+
T Consensus 84 n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L 130 (549)
T 2z81_A 84 NHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRI 130 (549)
T ss_dssp SCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEE
T ss_pred CccCc-cCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEEC
Confidence 99998 556679999999999999999985 3566 7899999998876
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.56 E-value=7.1e-15 Score=103.94 Aligned_cols=121 Identities=18% Similarity=0.195 Sum_probs=99.5
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccch-HhhcCCCCCcEEEc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVIN-QELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l 79 (130)
+++|.+++.. |..+..+++|++|++++|.+ +...+..++.+++|+.|++++|.++. ++. ..+..+++|++|++
T Consensus 83 L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 83 LTSNGINTIE-EDSFSSLGSLEHLDLSYNYL----SNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRV 156 (353)
T ss_dssp CTTSCCCEEC-TTTTTTCTTCCEEECCSSCC----SSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEE
T ss_pred CCCCccCccC-HhhcCCCCCCCEEECCCCcC----CcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEEC
Confidence 4678888755 77899999999999999999 44444458899999999999999984 442 25788999999999
Q ss_pred cCCC-CCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 80 DESD-LHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 80 ~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
++|. +.. ..+..++.+++|++|++++|.+.+..|. .+..+++|+++.+
T Consensus 157 ~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l 205 (353)
T 2z80_A 157 GNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPK-SLKSIQNVSHLIL 205 (353)
T ss_dssp EESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEE
T ss_pred CCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHH-HHhccccCCeecC
Confidence 9984 666 4456788999999999999999977777 8888888888865
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=2.4e-14 Score=106.74 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=47.4
Q ss_pred CCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCC
Q 037597 19 RKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTS 98 (130)
Q Consensus 19 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 98 (130)
+++++|++++|.+ ....+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.. +|.. .+++
T Consensus 52 ~~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQNSI----SELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYLDVSHNRLQN--ISCC--PMAS 122 (562)
T ss_dssp TTCCEEECCSSCC----CCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEECTTSCCCE--ECSC--CCTT
T ss_pred CCcCEEECCCCCc----cccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEEECCCCcCCc--cCcc--cccc
Confidence 4555555555555 233334445555555555555555433333 44555555555555555544 3333 4455
Q ss_pred CCEEeccCccccc-ccCcccccCcccceeee
Q 037597 99 LKYLSMQDSVLKG-ALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 99 L~~L~l~~n~l~~-~~p~~~~~~l~~l~~l~ 128 (130)
|++|++++|++.+ .+|. .+.++++|++|.
T Consensus 123 L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~ 152 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCK-EFGNLTKLTFLG 152 (562)
T ss_dssp CSEEECCSSCCSBCCCCG-GGGGCTTCCEEE
T ss_pred CCEEECCCCCccccCchH-hhcccCcccEEe
Confidence 5555555555442 1223 444444444443
No 73
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.56 E-value=8.7e-15 Score=104.68 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=57.6
Q ss_pred cCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHh-h
Q 037597 15 YRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQS-I 93 (130)
Q Consensus 15 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~ 93 (130)
+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+++..+. .+..+++|++|++++|.+.. +|.. +
T Consensus 65 ~~~l~~L~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~--l~~~~~ 137 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSS--LPRGIF 137 (390)
T ss_dssp HHHCCCCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCC--CCTTTT
T ss_pred hcccccCcEEECCCCcc----cccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCCCEEECCCCccCc--CCHHHh
Confidence 44556666666666655 233333555556666666666665533333 45555566666666665555 3332 3
Q ss_pred hcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 94 ASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 94 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
..+++|++|++++|.+.+..|. .+..+++|++|.+
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l 172 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQL 172 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEEC
T ss_pred cCCCCCcEEECCCCccCccChh-hccCCCCCCEEEC
Confidence 5556666666666655533333 4555555555543
No 74
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.56 E-value=1.7e-14 Score=108.05 Aligned_cols=110 Identities=18% Similarity=0.275 Sum_probs=53.5
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCc---hhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCch
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSK---ALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQ 88 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 88 (130)
|..+..+++|++|++++|.+ .+. .+..+..+++|+.|++++|.+++..|. .+..+++|+.|++++|.+.+ .
T Consensus 442 ~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~-~ 515 (606)
T 3t6q_A 442 EQLFDGLPALQHLNLQGNHF----PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDLSHNRLTS-S 515 (606)
T ss_dssp TTTTTTCTTCCEEECTTCBC----GGGEECSSCGGGGCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCG-G
T ss_pred HHHHhCCCCCCEEECCCCCC----CccccccchhhccCCCccEEECCCCccCccChh-hhccccCCCEEECCCCccCc-C
Confidence 44444455555555555544 111 112344445555555555555433333 45555555555555555555 4
Q ss_pred hHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 89 LLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 89 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
.|..+..++.| .+++++|++++..|. .+..+++|+++.+
T Consensus 516 ~~~~l~~l~~L-~L~L~~N~l~~~~~~-~~~~l~~L~~L~l 554 (606)
T 3t6q_A 516 SIEALSHLKGI-YLNLASNHISIILPS-LLPILSQQRTINL 554 (606)
T ss_dssp GGGGGTTCCSC-EEECCSSCCCCCCGG-GHHHHHTSSEEEC
T ss_pred ChhHhCccccc-EEECcCCcccccCHh-hcccCCCCCEEeC
Confidence 44455555555 555555555543343 4455555555543
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=6.7e-15 Score=98.96 Aligned_cols=118 Identities=11% Similarity=0.140 Sum_probs=82.9
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcc-cccccCCchhhhcCCCCCCCEEeccC-CCCCcccchHhhcCCCCCcEEEc
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTE-VAMIDGSKALQSIGSLPSLKTLYLSY-TNFTGTVINQELHNLTNLEELIL 79 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~l~~L~~L~l 79 (130)
++|.++... +..+..+++|++|++++|. + +...+..+..+++|+.+++++ |.+++..+. .+..+++|++|++
T Consensus 39 ~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l----~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~L~~L~l 112 (239)
T 2xwt_C 39 IETHLRTIP-SHAFSNLPNISRIYVSIDVTL----QQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELPLLKFLGI 112 (239)
T ss_dssp ESCCCSEEC-TTTTTTCTTCCEEEEECCSSC----CEECTTTEESCTTCCEEEEEEETTCCEECTT-SEECCTTCCEEEE
T ss_pred eCCcceEEC-HHHccCCCCCcEEeCCCCCCc----ceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCCCCCEEeC
Confidence 567776633 5578888888888888886 7 333334677888888888887 888733334 6777888888888
Q ss_pred cCCCCCCchhHHhhhcCCCCC---EEeccCc-ccccccCcccccCcccce-eeee
Q 037597 80 DESDLHVSQLLQSIASFTSLK---YLSMQDS-VLKGALHGQGKLRVSEAF-VILI 129 (130)
Q Consensus 80 ~~n~~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~p~~~~~~l~~l~-~l~~ 129 (130)
++|.+.. +|. +..+++|+ .+++++| .+. .+|...|..+++|+ ++.+
T Consensus 113 ~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 113 FNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEEC
T ss_pred CCCCCcc--ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEc
Confidence 8888777 555 66666676 7777777 776 44442577777777 6654
No 76
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=1.7e-15 Score=118.29 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=84.4
Q ss_pred CCCCCccCccccCCCCCCcEEEcCCcccccccCC-----------------chhhhcC--CCCCCCEEeccCCCCCcccc
Q 037597 4 NAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGS-----------------KALQSIG--SLPSLKTLYLSYTNFTGTVI 64 (130)
Q Consensus 4 n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-----------------~~~~~~~--~l~~L~~l~l~~~~~~~~~~ 64 (130)
|.+++ + |..+..+++|++|++++|.+ .+ .+|+.++ .+++|+.|++++|.+.+.+|
T Consensus 435 N~L~~-I-P~~l~~L~~L~~L~Ls~N~L----sg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP 508 (876)
T 4ecn_A 435 NRITF-I-SKAIQRLTKLQIIYFANSPF----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508 (876)
T ss_dssp CEEEE-E-CGGGGGCTTCCEEEEESCCC----CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC
T ss_pred Ccccc-h-hHHHhcCCCCCEEECcCCcC----CCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh
Confidence 55555 4 77777888888888888877 34 2677766 78888888888887777777
Q ss_pred hHhhcCCCCCcEEEccCCC-CCCchhHHhhhcCC-------CCCEEeccCcccccccCc-ccccCcccceeeee
Q 037597 65 NQELHNLTNLEELILDESD-LHVSQLLQSIASFT-------SLKYLSMQDSVLKGALHG-QGKLRVSEAFVILI 129 (130)
Q Consensus 65 ~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~p~-~~~~~l~~l~~l~~ 129 (130)
. .+..+++|+.|++++|. +++..+|..++.++ +|+.|++++|.+. .+|. ..+.++++|++|.+
T Consensus 509 ~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 509 D-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp G-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred H-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence 7 77778888888888886 55313566555544 7888888888877 6665 35777777777765
No 77
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=5.8e-14 Score=90.64 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=81.1
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.++. +|..+. +++++|++++|.+ .+..|..+..+++|+.|++++|.+++ ++...+..+++|+.|++++
T Consensus 20 ~~n~l~~--iP~~~~--~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 20 QNIRLAS--VPAGIP--TDKQRLWLNNNQI----TKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp CSSCCSS--CCSCCC--TTCSEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCc--cCCCcC--CCCcEEEeCCCCc----cccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCC
Confidence 5677754 476654 8899999999999 55567788999999999999999984 5542568899999999999
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccc
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
|.+.. ..+..+..+++|++|++++|++.
T Consensus 91 N~l~~-l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKS-IPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCC-CCTTTTTTCTTCSEEECCSSCBC
T ss_pred Cccce-eCHHHhccccCCCEEEeCCCCcc
Confidence 99998 33345889999999999999888
No 78
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=3.2e-14 Score=89.21 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=90.6
Q ss_pred CCCCCcEEEcCCcccccccC-CchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhc
Q 037597 17 GLRKLNTLVLGGTEVAMIDG-SKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIAS 95 (130)
Q Consensus 17 ~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 95 (130)
..+++++|++++|.+ . +.+|..+..+++|+.|++++|.+++. . .+..+++|++|++++|.+.+ .+|..++.
T Consensus 15 ~~~~l~~L~l~~n~l----~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~ 86 (149)
T 2je0_A 15 TPSDVKELVLDNSRS----NEGKLEGLTDEFEELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVSG-GLEVLAEK 86 (149)
T ss_dssp CGGGCSEEECTTCBC----BTTBCCSCCTTCTTCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCCS-CTHHHHHH
T ss_pred CCccCeEEEccCCcC----ChhHHHHHHhhcCCCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCcccc-hHHHHhhh
Confidence 457899999999999 4 47788889999999999999999854 4 68999999999999999998 67888888
Q ss_pred CCCCCEEeccCcccccc-cCcccccCcccceeeeeC
Q 037597 96 FTSLKYLSMQDSVLKGA-LHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 96 ~~~L~~L~l~~n~l~~~-~p~~~~~~l~~l~~l~~~ 130 (130)
+++|++|++++|.+.+. .+. .+..+++|+++.++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~-~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIE-PLKKLENLKSLDLF 121 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHG-GGGGCTTCCEEECT
T ss_pred CCCCCEEECCCCcCCChHHHH-HHhhCCCCCEEeCc
Confidence 99999999999999942 235 78899999998763
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=2.1e-14 Score=100.21 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=42.1
Q ss_pred hhcCCCCCCCEEeccCCCCCcc--cchHhh--cCCCCCcEEEccCCCCCCc-hhH-HhhhcCCCCCEEeccCcccccccC
Q 037597 41 QSIGSLPSLKTLYLSYTNFTGT--VINQEL--HNLTNLEELILDESDLHVS-QLL-QSIASFTSLKYLSMQDSVLKGALH 114 (130)
Q Consensus 41 ~~~~~l~~L~~l~l~~~~~~~~--~~~~~~--~~l~~L~~L~l~~n~~~~~-~~~-~~~~~~~~L~~L~l~~n~l~~~~p 114 (130)
..++.+++|+.|++++|.+.+. .+. .+ ..+++|++|++++|.+... ..+ ..+..+++|++|++++|.+.+..|
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLIS-ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHH-HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHH-HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 3445555555555555554432 122 22 4555566666666655530 011 223455566666666666654443
Q ss_pred cccccCcccceeeee
Q 037597 115 GQGKLRVSEAFVILI 129 (130)
Q Consensus 115 ~~~~~~l~~l~~l~~ 129 (130)
...+..+++|++|.+
T Consensus 246 ~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 246 APSCDWPSQLNSLNL 260 (312)
T ss_dssp CSCCCCCTTCCEEEC
T ss_pred hhhhhhcCCCCEEEC
Confidence 213344555555543
No 80
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.54 E-value=6.2e-14 Score=98.23 Aligned_cols=79 Identities=25% Similarity=0.261 Sum_probs=46.2
Q ss_pred CCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCccccee
Q 037597 47 PSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFV 126 (130)
Q Consensus 47 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~ 126 (130)
++|+.+++++|.+++..+. .+..+++|+.|++++|.+.+ ..+..+..+++|++|++++|.+. .+|. .+..++.|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~L~~ 267 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPG-GLADHKYIQV 267 (330)
T ss_dssp TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCS-SCCT-TTTTCSSCCE
T ss_pred ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCce-eChhhccCCCCCCEEECCCCcCc-cCCh-hhccCCCcCE
Confidence 4455555555555533334 56666666666666666665 33345566666666666666666 5666 5666666666
Q ss_pred eee
Q 037597 127 ILI 129 (130)
Q Consensus 127 l~~ 129 (130)
+.+
T Consensus 268 L~l 270 (330)
T 1xku_A 268 VYL 270 (330)
T ss_dssp EEC
T ss_pred EEC
Confidence 554
No 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.53 E-value=6.4e-14 Score=104.49 Aligned_cols=123 Identities=17% Similarity=0.219 Sum_probs=77.9
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCC--------
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLT-------- 72 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~-------- 72 (130)
+++|.+++.. |..+..+++|++|++++|.++.+ ...|..+..+++|+.|++++|.+++.+|...+..++
T Consensus 360 l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 360 FTQNVFTDSV-FQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp CCSSCCCTTT-TTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred CCCCccccch-hhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 4677777655 77888888888888888888311 134556778888888888888887534431244444
Q ss_pred --------------CCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 73 --------------NLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 73 --------------~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|+.|++++|.+.. +|..++.+++|+.|++++|+++ .+|...+..+++|+++.+
T Consensus 437 ~n~l~~~~~~~l~~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 437 SNMLTGSVFRCLPPKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp SSCCCGGGGSSCCTTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred CCCCCcchhhhhcCcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence 45555555555554 4554556666666666666666 555522666666666554
No 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.53 E-value=6.1e-14 Score=101.88 Aligned_cols=109 Identities=18% Similarity=0.194 Sum_probs=76.7
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHH
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQ 91 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 91 (130)
+..+.++++|++|++++|.+ ..+| .+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+.. ..+.
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l-----~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~ 249 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNL-----REIP-NLTPLIKLDELDLSGNHLSAIRPG-SFQGLMHLQKLWMIQSQIQV-IERN 249 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCC-----SSCC-CCTTCSSCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCE-ECTT
T ss_pred cchhhcccccCeecCCCCcC-----cccc-ccCCCcccCEEECCCCccCccChh-hhccCccCCEEECCCCceeE-EChh
Confidence 33456666666666666666 2232 356677777777777777754455 77778888888888888877 5556
Q ss_pred hhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 92 SIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 92 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
.+..+++|+.|++++|+++ .+|...+..+++|+++.+
T Consensus 250 ~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp SSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEEC
T ss_pred hhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEc
Confidence 7778888888888888888 444436777888877765
No 83
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=9.5e-15 Score=114.13 Aligned_cols=108 Identities=12% Similarity=0.176 Sum_probs=87.2
Q ss_pred ccccC--CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCC-CCc-ccchHhhcCCC-------CCcEEEcc
Q 037597 12 PKDYR--GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTN-FTG-TVINQELHNLT-------NLEELILD 80 (130)
Q Consensus 12 p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~-~~~~~~~~~l~-------~L~~L~l~ 80 (130)
|+.++ .+++|++|++++|.+ .+.+|..++.+++|+.|++++|. +++ .+|. .+..+. +|+.|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l----~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPN----MTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTT----CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECC
T ss_pred ChhhhhccCCCCCEEECcCCCC----CccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEee
Confidence 77877 899999999999887 57888888889999999999997 876 6776 555443 88888888
Q ss_pred CCCCCCchhHH--hhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQ--SIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.. +|. .++.+++|+.|++++|.+. .+| .+..+++|++|.+
T Consensus 557 ~N~L~~--ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~L 602 (876)
T 4ecn_A 557 YNNLEE--FPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKL 602 (876)
T ss_dssp SSCCCB--CCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEEC
T ss_pred CCcCCc--cCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEEC
Confidence 888886 777 7888888888888888888 777 4777777777765
No 84
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=9.8e-14 Score=104.34 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=89.5
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++.. |..+..+++|++|++++|.+ .+..|..++.+++|++|++++|.++ .+|...+..+++|++|+++
T Consensus 82 L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 82 LNDLQIEEID-TYAFAYAHTIQKLYMGFNAI----RYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CTTSCCCEEC-TTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCCCCCCCCC-hHHhcCCCCCCEEECCCCcC----CCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEee
Confidence 4678888755 77899999999999999999 5656667899999999999999998 5555256899999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCccccc
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKG 111 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 111 (130)
+|.+.+ ..|..++.+++|+.|++++|.+.+
T Consensus 156 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 156 NNNLER-IEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp SSCCCB-CCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCcCCC-CChhhhhcCCcCcEEECcCCCCCC
Confidence 999998 666689999999999999999984
No 85
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.52 E-value=1.5e-13 Score=100.19 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=78.3
Q ss_pred cccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHh
Q 037597 13 KDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQS 92 (130)
Q Consensus 13 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 92 (130)
..+.++++|++|++++|.+ . .+ +.+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+.. ..+..
T Consensus 190 ~~~~~l~~L~~L~L~~n~l----~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~ 261 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNI----K-DM-PNLTPLVGLEELEMSGNHFPEIRPG-SFHGLSSLKKLWVMNSQVSL-IERNA 261 (452)
T ss_dssp TTTTTCTTCCEEECTTSCC----S-SC-CCCTTCTTCCEEECTTSCCSEECGG-GGTTCTTCCEEECTTSCCCE-ECTTT
T ss_pred hhccCCCCCCEEECCCCcc----c-cc-ccccccccccEEECcCCcCcccCcc-cccCccCCCEEEeCCCcCce-ECHHH
Confidence 3456666777777777766 2 22 2466677788888888888755555 78888888888888888887 55667
Q ss_pred hhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 93 IASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 93 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+..+++|+.|++++|+++ .+|...+..+++|+++.+
T Consensus 262 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp TTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEc
Confidence 788888888888888888 444436777888887765
No 86
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.52 E-value=1.4e-13 Score=98.48 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=88.4
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.++... +..+..+++|++|++++|.+ ....|..++.+++|+.|++++|.++ .+|...+..+++|++|+++
T Consensus 76 L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 76 LNDLQIEEID-TYAFAYAHTIQKLYMGFNAI----RYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CTTSCCCEEC-TTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCCCcccccC-hhhccCCCCcCEEECCCCCC----CcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECC
Confidence 4678887644 67899999999999999999 5556667899999999999999998 5665246889999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCccccc
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKG 111 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 111 (130)
+|.+.. ..+..+..+++|+.|++++|.+.+
T Consensus 150 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 150 NNNLER-IEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp SSCCCB-CCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCccCc-cChhhccCCCCCCEEECCCCcCCc
Confidence 999998 556678999999999999999883
No 87
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=2.4e-13 Score=92.98 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=43.2
Q ss_pred CCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCccccee
Q 037597 47 PSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFV 126 (130)
Q Consensus 47 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~ 126 (130)
.+|+.|++++|.++ ..+ .+..+++|+.|++++|.+.+ ++ .++.+++|+.|++++|.+.+. . .+..+++|++
T Consensus 106 ~~L~~L~L~~N~l~-~~~--~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~--~-~l~~l~~L~~ 176 (263)
T 1xeu_A 106 ACLSRLFLDNNELR-DTD--SLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT--G-GLTRLKKVNW 176 (263)
T ss_dssp SSCCEEECCSSCCS-BSG--GGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC--T-TSTTCCCCCE
T ss_pred CcccEEEccCCccC-CCh--hhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch--H-HhccCCCCCE
Confidence 44555555555554 222 35666666677777666666 33 466666777777777766633 3 4566666666
Q ss_pred eee
Q 037597 127 ILI 129 (130)
Q Consensus 127 l~~ 129 (130)
+.+
T Consensus 177 L~l 179 (263)
T 1xeu_A 177 IDL 179 (263)
T ss_dssp EEE
T ss_pred EeC
Confidence 554
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=4e-13 Score=93.03 Aligned_cols=84 Identities=26% Similarity=0.391 Sum_probs=36.6
Q ss_pred cCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhh
Q 037597 15 YRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIA 94 (130)
Q Consensus 15 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 94 (130)
+..+++|++|++++|.+ .. + +.+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+.+ + ..+.
T Consensus 86 l~~l~~L~~L~l~~n~l----~~-~-~~l~~l~~L~~L~L~~n~i~~-~~--~l~~l~~L~~L~l~~n~l~~--~-~~l~ 153 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKV----KD-L-SSLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITD--I-TVLS 153 (291)
T ss_dssp GTTCTTCCEEECCSSCC----CC-G-GGGTTCTTCCEEECTTSCCCC-CG--GGGGCTTCCEEECCSSCCCC--C-GGGG
T ss_pred cccCCCCCEEECCCCcC----CC-C-hhhccCCCCCEEECCCCcCCC-Ch--hhcCCCCCCEEEccCCcCCc--c-hhhc
Confidence 44455555555555544 11 1 224444455555555554442 22 23444444444444444444 1 2344
Q ss_pred cCCCCCEEeccCcccc
Q 037597 95 SFTSLKYLSMQDSVLK 110 (130)
Q Consensus 95 ~~~~L~~L~l~~n~l~ 110 (130)
.+++|+.|++++|.+.
T Consensus 154 ~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQIS 169 (291)
T ss_dssp GCTTCSEEECCSSCCC
T ss_pred cCCCCCEEEccCCccc
Confidence 4444444444444444
No 89
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=5.5e-15 Score=113.57 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=93.2
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.+.. +|..+..+++|++|++++|.+ + .+|..++.+++|++|++++|.++ .+|. .+..+.+|++|+++
T Consensus 231 Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l----~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 231 LSNLQIFN--ISANIFKYDFLTRLYLNGNSL----T-ELPAEIKNLSNLRVLDLSHNRLT-SLPA-ELGSCFQLKYFYFF 301 (727)
T ss_dssp CTTSCCSC--CCGGGGGCCSCSCCBCTTSCC----S-CCCGGGGGGTTCCEEECTTSCCS-SCCS-SGGGGTTCSEEECC
T ss_pred CCCCCCCC--CChhhcCCCCCCEEEeeCCcC----c-ccChhhhCCCCCCEEeCcCCcCC-ccCh-hhcCCCCCCEEECC
Confidence 46788874 477888999999999999999 4 78888999999999999999999 7888 89999999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCc
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHG 115 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 115 (130)
+|.+.. +|..|+.+++|+.|++++|.+++.+|.
T Consensus 302 ~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 302 DNMVTT--LPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp SSCCCC--CCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCCCc--cChhhhcCCCccEEeCCCCccCCCChH
Confidence 999987 788899999999999999999987776
No 90
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=5.5e-14 Score=89.79 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=90.4
Q ss_pred CCCCCCcEEEcCCcccccccC-CchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhh
Q 037597 16 RGLRKLNTLVLGGTEVAMIDG-SKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIA 94 (130)
Q Consensus 16 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 94 (130)
...+++++|++++|.+ . +.+|..+..+++|+.|++++|.+++. . .+..+++|++|++++|.+.+ ..|..+.
T Consensus 21 ~~~~~L~~L~l~~n~l----~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~ 92 (168)
T 2ell_A 21 RTPAAVRELVLDNCKS----NDGKIEGLTAEFVNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIFG-GLDMLAE 92 (168)
T ss_dssp SCTTSCSEEECCSCBC----BTTBCSSCCGGGGGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCCS-CCCHHHH
T ss_pred CCcccCCEEECCCCCC----ChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCch-HHHHHHh
Confidence 3458899999999999 4 46777788899999999999999854 4 68899999999999999998 6777778
Q ss_pred cCCCCCEEeccCcccccccC--cccccCcccceeeeeC
Q 037597 95 SFTSLKYLSMQDSVLKGALH--GQGKLRVSEAFVILIR 130 (130)
Q Consensus 95 ~~~~L~~L~l~~n~l~~~~p--~~~~~~l~~l~~l~~~ 130 (130)
.+++|++|++++|.++ .+| . .+..+++|++|.++
T Consensus 93 ~l~~L~~L~Ls~N~l~-~~~~~~-~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLK-DISTLE-PLKKLECLKSLDLF 128 (168)
T ss_dssp HCTTCCEEECBSSSCC-SSGGGG-GGSSCSCCCEEECC
T ss_pred hCCCCCEEeccCCccC-cchhHH-HHhcCCCCCEEEee
Confidence 8999999999999999 554 4 78889999998763
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.50 E-value=1.4e-13 Score=96.54 Aligned_cols=99 Identities=21% Similarity=0.375 Sum_probs=58.2
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.+.... |..+..+++|++|++++|.+ ....|..+..+++|+.|++++|.++ .+|. .+. ++|++|++++
T Consensus 62 ~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~-~~~--~~L~~L~l~~ 132 (332)
T 2ft3_A 62 QNNDISELR-KDDFKGLQHLYALVLVNNKI----SKIHEKAFSPLRKLQKLYISKNHLV-EIPP-NLP--SSLVELRIHD 132 (332)
T ss_dssp CSSCCCEEC-TTTTTTCTTCCEEECCSSCC----CEECGGGSTTCTTCCEEECCSSCCC-SCCS-SCC--TTCCEEECCS
T ss_pred CCCcCCccC-HhHhhCCCCCcEEECCCCcc----CccCHhHhhCcCCCCEEECCCCcCC-ccCc-ccc--ccCCEEECCC
Confidence 455555433 45566666666666666666 3444555666666666666666665 4444 222 4566666666
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccc
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 133 n~i~~-~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 133 NRIRK-VPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp SCCCC-CCSGGGSSCSSCCEEECCSCCCB
T ss_pred CccCc-cCHhHhCCCccCCEEECCCCccc
Confidence 66665 32334566666666666666664
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=1.4e-14 Score=101.10 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=79.8
Q ss_pred CCCCCCCccCcccc--CCCCCCcEEEcCCcccccccCCchhhhcCCC-----CCCCEEeccCCCCCcccchHhhcCCCCC
Q 037597 2 SANAIDNLVVPKDY--RGLRKLNTLVLGGTEVAMIDGSKALQSIGSL-----PSLKTLYLSYTNFTGTVINQELHNLTNL 74 (130)
Q Consensus 2 ~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~~l~~L 74 (130)
++|.+++.. |..+ ..+++|++|++++|.+ .+. |..+..+ ++|++|++++|.+++..+. .+..+++|
T Consensus 103 ~~n~l~~~~-~~~~~~~~l~~L~~L~Ls~N~l----~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L 175 (312)
T 1wwl_A 103 ENLEVTGTA-PPPLLEATGPDLNILNLRNVSW----ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPAL 175 (312)
T ss_dssp EEEBCBSCC-CCCSSSCCSCCCSEEEEESCBC----SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSC
T ss_pred cCCcccchh-HHHHHHhcCCCccEEEccCCCC----cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCC
Confidence 456676655 5555 7778888888888887 333 5544444 7788888888888754445 67778888
Q ss_pred cEEEccCCCCCCch--hHHhh--hcCCCCCEEeccCccccc--ccCcccccCcccceeeee
Q 037597 75 EELILDESDLHVSQ--LLQSI--ASFTSLKYLSMQDSVLKG--ALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 75 ~~L~l~~n~~~~~~--~~~~~--~~~~~L~~L~l~~n~l~~--~~p~~~~~~l~~l~~l~~ 129 (130)
++|++++|.+.+ . .+..+ +.+++|++|++++|.+++ .++...+..+++|++|.+
T Consensus 176 ~~L~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 176 STLDLSDNPELG-ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp CEEECCSCTTCH-HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred CEEECCCCCcCc-chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC
Confidence 888888887765 3 23444 677888888888887772 222223445667777665
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=3.2e-13 Score=92.31 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=89.3
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.++. +| .+..+++|++|++++|.+ .+ +++ +..+++|+.|++++|.++ .++. +.. ++|++|+++
T Consensus 48 l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i----~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~--~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 48 GDNSNIQS--LA-GMQFFTNLKELHLSHNQI----SD-LSP-LKDLTKLEELSVNRNRLK-NLNG--IPS-ACLSRLFLD 114 (263)
T ss_dssp CTTSCCCC--CT-TGGGCTTCCEEECCSSCC----CC-CGG-GTTCSSCCEEECCSSCCS-CCTT--CCC-SSCCEEECC
T ss_pred CcCCCccc--ch-HHhhCCCCCEEECCCCcc----CC-Chh-hccCCCCCEEECCCCccC-CcCc--ccc-CcccEEEcc
Confidence 45677765 35 678899999999999998 33 444 888999999999999998 4554 334 889999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
+|.+.+ ++ .+..+++|+.|++++|+++ .++ .+..+++|++|.++
T Consensus 115 ~N~l~~--~~-~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 115 NNELRD--TD-SLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLH 158 (263)
T ss_dssp SSCCSB--SG-GGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECT
T ss_pred CCccCC--Ch-hhcCcccccEEECCCCcCC-CCh--HHccCCCCCEEECC
Confidence 999998 44 5889999999999999999 555 47888889888763
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.49 E-value=6.9e-14 Score=108.81 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=89.8
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccch-HhhcCCCCCcEEEcc
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVIN-QELHNLTNLEELILD 80 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~ 80 (130)
++|...+.+.|..+.++++|++|++++|.+ ....|..++.+++|+.|++++|.+++..+. ..+..+++|++|+++
T Consensus 56 s~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l----~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls 131 (844)
T 3j0a_A 56 GSQYTPLTIDKEAFRNLPNLRILDLGSSKI----YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131 (844)
T ss_dssp CTTCCCCEECTTTTSSCTTCCEEECTTCCC----CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEE
T ss_pred CCCCCccccCHHHhcCCCCCCEEECCCCcC----cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECC
Confidence 455444444477888899999999999988 455677888899999999999988765554 137788889999999
Q ss_pred CCCCCCchhH-HhhhcCCCCCEEeccCcccccccCcccccCc--ccceeee
Q 037597 81 ESDLHVSQLL-QSIASFTSLKYLSMQDSVLKGALHGQGKLRV--SEAFVIL 128 (130)
Q Consensus 81 ~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l--~~l~~l~ 128 (130)
+|.+.+ ..+ ..++.+++|++|++++|.+.+..|. .+..+ ++|+++.
T Consensus 132 ~N~l~~-~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 132 KNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFS 180 (844)
T ss_dssp SCCCCC-CCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSSCCCE
T ss_pred CCcccc-cccchhHhhCCCCCEEECCCCcCCeeCHH-HcccccCCccceEE
Confidence 988877 333 5688888999999988888866666 55544 4454443
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=6.1e-13 Score=92.72 Aligned_cols=62 Identities=37% Similarity=0.522 Sum_probs=25.5
Q ss_pred cCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccc
Q 037597 43 IGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 43 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
+..+++|+.|++++|.++ .++. +..+++|++|++++|.+.+ ++. ++.+++|+.|++++|.++
T Consensus 103 ~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp GTTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCCCC-Cchh--hcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCcCC
Confidence 344444444444444443 1221 3344444444444444443 221 344444444444444444
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=4.2e-13 Score=92.93 Aligned_cols=111 Identities=23% Similarity=0.431 Sum_probs=92.4
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.++. +| .+..+++|++|++++|.+ .. + +.+..+++|+.|++++|.+++ + + .+..+++|++|+++
T Consensus 97 l~~n~l~~--~~-~l~~l~~L~~L~L~~n~i----~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~-~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 97 LDENKVKD--LS-SLKDLKKLKSLSLEHNGI----SD-I-NGLVHLPQLESLYLGNNKITD-I-T-VLSRLTKLDTLSLE 164 (291)
T ss_dssp CCSSCCCC--GG-GGTTCTTCCEEECTTSCC----CC-C-GGGGGCTTCCEEECCSSCCCC-C-G-GGGGCTTCSEEECC
T ss_pred CCCCcCCC--Ch-hhccCCCCCEEECCCCcC----CC-C-hhhcCCCCCCEEEccCCcCCc-c-h-hhccCCCCCEEEcc
Confidence 46788876 24 589999999999999999 33 3 467889999999999999984 4 4 68899999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.+ .+. +..+++|+.|++++|.++ .+|. +..+++|++|.+
T Consensus 165 ~N~l~~--~~~-l~~l~~L~~L~L~~N~i~-~l~~--l~~l~~L~~L~l 207 (291)
T 1h6t_A 165 DNQISD--IVP-LAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLEL 207 (291)
T ss_dssp SSCCCC--CGG-GTTCTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEE
T ss_pred CCcccc--chh-hcCCCccCEEECCCCcCC-CChh--hccCCCCCEEEC
Confidence 999998 444 889999999999999998 5655 778888888765
No 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.49 E-value=1e-13 Score=97.23 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=67.0
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.+++.. +..+..+++|++|++++|.+ ....+..+..+++|+.+++++|.++ .+|. .+..+++|+.|++++
T Consensus 201 ~~n~i~~~~-~~~l~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 201 DHNKIQAIE-LEDLLRYSKLYRLGLGHNQI----RMIENGSLSFLPTLRELHLDNNKLS-RVPA-GLPDLKLLQVVYLHT 273 (332)
T ss_dssp CSSCCCCCC-TTSSTTCTTCSCCBCCSSCC----CCCCTTGGGGCTTCCEEECCSSCCC-BCCT-TGGGCTTCCEEECCS
T ss_pred CCCcCCccC-HHHhcCCCCCCEEECCCCcC----CcCChhHhhCCCCCCEEECCCCcCe-ecCh-hhhcCccCCEEECCC
Confidence 455555433 45566666666666666666 3333445556666666666666666 5555 566666666666666
Q ss_pred CCCCCchhHHhhhc------CCCCCEEeccCcccc--cccCcccccCcccceeeee
Q 037597 82 SDLHVSQLLQSIAS------FTSLKYLSMQDSVLK--GALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 82 n~~~~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~p~~~~~~l~~l~~l~~ 129 (130)
|.++. .-+..+.. ...++.+++.+|++. ...|. .|..++.|+.+.+
T Consensus 274 N~l~~-~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~-~~~~l~~L~~l~l 327 (332)
T 2ft3_A 274 NNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA-TFRCVTDRLAIQF 327 (332)
T ss_dssp SCCCB-CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG-GGTTBCCSTTEEC
T ss_pred CCCCc-cChhHccccccccccccccceEeecCcccccccCcc-cccccchhhhhhc
Confidence 66665 22223322 244566666666554 23333 5666666665544
No 98
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=2.1e-13 Score=87.60 Aligned_cols=101 Identities=23% Similarity=0.214 Sum_probs=84.2
Q ss_pred CCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCC
Q 037597 20 KLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSL 99 (130)
Q Consensus 20 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 99 (130)
..+.+++++|.+ ..+|..+ ...++.|++++|.+++..+. .+..+++|++|++++|.+.. ..+..+..+++|
T Consensus 10 ~~~~l~~s~n~l-----~~ip~~~--~~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L 80 (170)
T 3g39_A 10 SGTTVDCSGKSL-----ASVPTGI--PTTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQL 80 (170)
T ss_dssp ETTEEECTTSCC-----SSCCSCC--CTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCEEEeCCCCc-----CccCccC--CCCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCCcCc-cChhhccCCCCC
Confidence 357899999999 4566555 48899999999999965566 79999999999999999998 444467899999
Q ss_pred CEEeccCcccccccCcccccCcccceeeeeC
Q 037597 100 KYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 100 ~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
++|++++|++++ +|...|..+++|++|.+.
T Consensus 81 ~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 81 TQLSLNDNQLKS-IPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp CEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCccCE-eCHHHhcCCCCCCEEEeC
Confidence 999999999994 554378999999998763
No 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.48 E-value=2.4e-13 Score=103.15 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=98.3
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
+++.++. +|..+. +++++|++++|.+ .+..+..+..+++|++|++++|.+++..+. .+..+++|++|++++
T Consensus 12 s~~~L~~--ip~~~~--~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 12 SHLKLTQ--VPDDLP--TNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQH 82 (680)
T ss_dssp CSSCCSS--CCSCSC--TTCSEEECCSSCC----CCCCGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCS
T ss_pred CCCCccc--cccccC--CCCcEEECCCCCC----CCcCHHHHhCCCcCcEEECCCCccCccCHH-HHhcccCcCEEECCC
Confidence 4556654 476654 7899999999999 455566789999999999999999976676 899999999999999
Q ss_pred CCCCCchhHH-hhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 82 SDLHVSQLLQ-SIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 82 n~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
|.+.. +|. .++.+++|++|++++|.+.+..|. .|.++++|++|.+.
T Consensus 83 n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 83 NELSQ--LSDKTFAFCTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLS 129 (680)
T ss_dssp SCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCSC-TTTTCTTCCEEECC
T ss_pred CccCc--cChhhhccCCCCCEEECCCCccCccChh-HccccCCCCEEECC
Confidence 99998 554 699999999999999999955556 89999999998763
No 100
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.48 E-value=7.3e-13 Score=92.33 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=91.0
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+.. +| .+..+++|++|++++|.+ . .+++ +..+++|+.|++++|.++ ..+ .+..+++|++|+++
T Consensus 48 l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i----~-~~~~-~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 48 AFGTGVTT--IE-GVQYLNNLIGLELKDNQI----T-DLAP-LKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLT 115 (308)
T ss_dssp CTTSCCCC--CT-TGGGCTTCCEEECCSSCC----C-CCGG-GTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEEECT
T ss_pred eeCCCccC--ch-hhhccCCCCEEEccCCcC----C-CChh-HccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEEECC
Confidence 35677765 35 688899999999999999 3 3444 889999999999999998 444 58899999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.+ ++. +..+++|++|++++|.+. .++. +..+++|++|.+
T Consensus 116 ~n~l~~--~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l 158 (308)
T 1h6u_A 116 STQITD--VTP-LAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSI 158 (308)
T ss_dssp TSCCCC--CGG-GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEEC
T ss_pred CCCCCC--chh-hcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEc
Confidence 999998 444 899999999999999998 5554 677778877765
No 101
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.47 E-value=9.1e-13 Score=92.63 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=79.1
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.++. .+. +..+++|++|++++|.+ .. + +.+..+++|+.+++++|.+++ .+ .+..+++|+.|+++
T Consensus 228 l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l----~~-~-~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 228 IGNNKITD--LSP-LANLSQLTWLEIGTNQI----SD-I-NAVKDLTKLKMLNVGSNQISD-IS--VLNNLSQLNSLFLN 295 (347)
T ss_dssp CCSSCCCC--CGG-GTTCTTCCEEECCSSCC----CC-C-GGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECC
T ss_pred ccCCccCC--Ccc-hhcCCCCCEEECCCCcc----CC-C-hhHhcCCCcCEEEccCCccCC-Ch--hhcCCCCCCEEECc
Confidence 35666655 233 67777777777777777 22 2 456777788888888887773 33 47777888888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.+ ..+..++.+++|+.|++++|++.+..| +..++.|+++.+
T Consensus 296 ~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l 340 (347)
T 4fmz_A 296 NNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADF 340 (347)
T ss_dssp SSCCCG-GGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESS
T ss_pred CCcCCC-cChhHhhccccCCEEEccCCccccccC---hhhhhccceeeh
Confidence 888877 666777888888888888888874433 456677776654
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=96.29 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=56.9
Q ss_pred CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcc--cch-HhhcCCCCCcEEEccCCCCCCchhHH--
Q 037597 17 GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGT--VIN-QELHNLTNLEELILDESDLHVSQLLQ-- 91 (130)
Q Consensus 17 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~-- 91 (130)
.+++|++|++++|.+ ....+..++.+++|++|++++|.+.+. .+. ..+..+++|++|.+++|.++. ++.
T Consensus 143 ~~~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~ 216 (310)
T 4glp_A 143 LKPGLKVLSIAQAHS----PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PTGVC 216 (310)
T ss_dssp BCSCCCEEEEECCSS----CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HHHHH
T ss_pred hccCCCEEEeeCCCc----chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hHHHH
Confidence 355555555555555 333444555666666666666655421 111 012445566666666666654 333
Q ss_pred --hhhcCCCCCEEeccCcccccccCcccccCc---ccceeeee
Q 037597 92 --SIASFTSLKYLSMQDSVLKGALHGQGKLRV---SEAFVILI 129 (130)
Q Consensus 92 --~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l---~~l~~l~~ 129 (130)
.++.+++|++|++++|.+.+..|. .+..+ ++|++|.+
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~L 258 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNL 258 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEEC
T ss_pred HHHHhcCCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEEC
Confidence 235666777777777777655555 44444 45555544
No 103
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=3.5e-13 Score=86.98 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=83.7
Q ss_pred CcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHH-hhhcCCCC
Q 037597 21 LNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQ-SIASFTSL 99 (130)
Q Consensus 21 L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~L 99 (130)
-+.++++++.+ ..+|..+. .+|+.|++++|.+++..+. .+..+++|+.|++++|.+.. +|. .+..+++|
T Consensus 14 ~~~l~~~~n~l-----~~iP~~~~--~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L 83 (174)
T 2r9u_A 14 QTLVNCQNIRL-----ASVPAGIP--TDKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQL 83 (174)
T ss_dssp SSEEECCSSCC-----SSCCSCCC--TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTC
T ss_pred CcEEEeCCCCC-----CccCCCcC--CCCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCCCCCc--cChhHhCCcchh
Confidence 47899999998 46676553 8899999999999966566 89999999999999999998 554 56899999
Q ss_pred CEEeccCcccccccCcccccCcccceeeeeC
Q 037597 100 KYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 100 ~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
+.|++++|.+. .+|...|..+++|++|.+.
T Consensus 84 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 84 TQLDLNDNHLK-SIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCSEEECC
T ss_pred hEEECCCCccc-eeCHHHhccccCCCEEEeC
Confidence 99999999999 5555368999999998763
No 104
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=3.7e-13 Score=100.99 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=89.3
Q ss_pred CCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCC
Q 037597 20 KLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSL 99 (130)
Q Consensus 20 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 99 (130)
.|+.|++++|.+ + .+|. ++.+++|+.|++++|.++ .+|. .+..+++|+.|++++|.+++ +| .++.+++|
T Consensus 442 ~L~~L~Ls~n~l----~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDL----T-VLCH-LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN--VD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTSCC----S-SCCC-GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC--CG-GGTTCSSC
T ss_pred CceEEEecCCCC----C-CCcC-ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCC
Confidence 589999999999 3 4665 889999999999999999 8888 89999999999999999998 67 89999999
Q ss_pred CEEeccCccccccc-CcccccCcccceeeeeC
Q 037597 100 KYLSMQDSVLKGAL-HGQGKLRVSEAFVILIR 130 (130)
Q Consensus 100 ~~L~l~~n~l~~~~-p~~~~~~l~~l~~l~~~ 130 (130)
+.|++++|.+++.. |. .+..+++|++|.+.
T Consensus 511 ~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQ 541 (567)
T ss_dssp CEEECCSSCCCSSSTTG-GGGGCTTCCEEECT
T ss_pred cEEECCCCCCCCCCCcH-HHhcCCCCCEEEec
Confidence 99999999999665 88 89999999998763
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=1.2e-12 Score=98.88 Aligned_cols=101 Identities=24% Similarity=0.410 Sum_probs=51.4
Q ss_pred ccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhh
Q 037597 14 DYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSI 93 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 93 (130)
.+..+++|++|++++|.+ .. + +.+..+++|+.|++++|.+++ + . .+..+++|+.|++++|.+.+ . +. +
T Consensus 104 ~l~~l~~L~~L~Ls~N~l----~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~-~l~~l~~L~~L~Ls~N~l~~-~-~~-l 171 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGI----SD-I-NGLVHLPQLESLYLGNNKITD-I-T-VLSRLTKLDTLSLEDNQISD-I-VP-L 171 (605)
T ss_dssp TSTTCTTCCEEECTTSCC----CC-C-GGGGGCTTCSEEECCSSCCCC-C-G-GGGSCTTCSEEECCSSCCCC-C-GG-G
T ss_pred hhccCCCCCEEEecCCCC----CC-C-ccccCCCccCEEECCCCccCC-c-h-hhcccCCCCEEECcCCcCCC-c-hh-h
Confidence 344445555555555544 11 1 234445555555555555542 2 2 35555556666666665555 2 22 5
Q ss_pred hcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 94 ASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 94 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
..+++|+.|++++|.++ .+|. +..+++|+.|.+
T Consensus 172 ~~l~~L~~L~Ls~N~i~-~l~~--l~~l~~L~~L~L 204 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLEL 204 (605)
T ss_dssp TTCTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEC
T ss_pred ccCCCCCEEECcCCCCC-CChH--HccCCCCCEEEc
Confidence 55666666666666665 3332 555566655544
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=1.3e-12 Score=98.69 Aligned_cols=112 Identities=20% Similarity=0.335 Sum_probs=90.8
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
|++|.+++. ++ +..+++|++|++++|.+ .. + +.+..+++|+.|++++|.++ .++ .+..+++|+.|+++
T Consensus 72 Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l----~~-l-~~l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 72 LNGNKLTDI--KP-LTNLKNLGWLFLDENKI----KD-L-SSLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLG 139 (605)
T ss_dssp CTTSCCCCC--GG-GGGCTTCCEEECCSSCC----CC-C-TTSTTCTTCCEEECTTSCCC-CCG--GGGGCTTCSEEECC
T ss_pred eeCCCCCCC--hh-hccCCCCCEEECcCCCC----CC-C-hhhccCCCCCEEEecCCCCC-CCc--cccCCCccCEEECC
Confidence 467888773 43 88999999999999998 22 3 46888999999999999998 344 48889999999999
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
+|.+.+ + ..+..+++|+.|++++|.+.+..| +..+++|++|.++
T Consensus 140 ~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 140 NNKITD--I-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLS 183 (605)
T ss_dssp SSCCCC--C-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECC
T ss_pred CCccCC--c-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECc
Confidence 999998 4 678899999999999999984443 6778888888763
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=1.9e-13 Score=95.69 Aligned_cols=120 Identities=14% Similarity=0.122 Sum_probs=70.1
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCc-hhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSK-ALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
++|.+.+. +..+..+++|++|++++|.+ ... ++..+..+++|+.|++++|.+++..+. .+..+++|++|+++
T Consensus 78 ~~n~l~~~--~~~~~~~~~L~~L~L~~~~l----~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 78 PRSFMDQP--LAEHFSPFRVQHMDLSNSVI----EVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLS 150 (336)
T ss_dssp TTCEECSC--CCSCCCCBCCCEEECTTCEE----CHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECT
T ss_pred CCcccccc--chhhccCCCCCEEEccCCCc----CHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECC
Confidence 44555542 23345667777777777766 333 555666667777777777766644454 56666667777776
Q ss_pred CC-CCCCchhHHhhhcCCCCCEEeccCc-ccccc-cCcccccCcc-cceeeee
Q 037597 81 ES-DLHVSQLLQSIASFTSLKYLSMQDS-VLKGA-LHGQGKLRVS-EAFVILI 129 (130)
Q Consensus 81 ~n-~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~p~~~~~~l~-~l~~l~~ 129 (130)
+| .+.+..++..+..+++|++|++++| .+++. ++. .+..++ +|++|.+
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l 202 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNL 202 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEEC
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEe
Confidence 66 4554114455666666666666666 55532 344 445555 5555543
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=95.87 Aligned_cols=118 Identities=15% Similarity=0.135 Sum_probs=81.6
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCc--hhh--hcCCCCCCCEEeccCCCCCcccchH---hhcCCCC
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSK--ALQ--SIGSLPSLKTLYLSYTNFTGTVINQ---ELHNLTN 73 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~--~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~l~~ 73 (130)
+++|.+.+.. |..+..+++|++|++++|.+ .+. .+. .++.+++|++|++++|.++ .++.. .+..+++
T Consensus 152 Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 152 IAQAHSPAFS-CEQVRAFPALTSLDLSDNPG----LGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQ 225 (310)
T ss_dssp EECCSSCCCC-TTSCCCCTTCCEEECCSCTT----CHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCC
T ss_pred eeCCCcchhh-HHHhccCCCCCEEECCCCCC----ccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCC
Confidence 3577887644 77888999999999999986 222 222 2357788888888888886 33320 1356778
Q ss_pred CcEEEccCCCCCCchhHHhhhcC---CCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 74 LEELILDESDLHVSQLLQSIASF---TSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 74 L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
|++|++++|.+.+ ..|..+..+ ++|++|++++|+++ .+|. .+. ++|++|.+
T Consensus 226 L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-~~~--~~L~~L~L 279 (310)
T 4glp_A 226 PHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLE-QVPK-GLP--AKLRVLDL 279 (310)
T ss_dssp CSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCC-SCCS-CCC--SCCSCEEC
T ss_pred CCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCC-chhh-hhc--CCCCEEEC
Confidence 8888888888887 446666655 57888888888887 6776 332 45555544
No 109
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.42 E-value=1.3e-13 Score=92.57 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=16.0
Q ss_pred hcCCCCCc-EEEccCCCCCCchhHHhhhcCCCCCEEeccCc
Q 037597 68 LHNLTNLE-ELILDESDLHVSQLLQSIASFTSLKYLSMQDS 107 (130)
Q Consensus 68 ~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 107 (130)
+..+++|+ .+++++|.+.. +|......++|+.|++++|
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~--i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCE--ECTTTTTTCEEEEEECTTC
T ss_pred ccchhcceeEEEcCCCCCcc--cCHhhcCCCCCCEEEcCCC
Confidence 44444444 44444444443 2322222234444444444
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.42 E-value=1.5e-12 Score=91.52 Aligned_cols=113 Identities=14% Similarity=0.253 Sum_probs=88.0
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.+... +. +..+++|++|++++|.+ . ..++ +..+++|+.+++++|.++ ..+ .+..+++|+.|++++
T Consensus 207 ~~n~l~~~--~~-~~~~~~L~~L~l~~n~l----~-~~~~-~~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 207 YVNQITDI--TP-VANMTRLNSLKIGNNKI----T-DLSP-LANLSQLTWLEIGTNQIS-DIN--AVKDLTKLKMLNVGS 274 (347)
T ss_dssp CSSCCCCC--GG-GGGCTTCCEEECCSSCC----C-CCGG-GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCS
T ss_pred ccCCCCCC--ch-hhcCCcCCEEEccCCcc----C-CCcc-hhcCCCCCEEECCCCccC-CCh--hHhcCCCcCEEEccC
Confidence 45555542 22 67788888888888888 2 3333 788889999999999887 343 588889999999999
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
|.+.+ + ..+..+++|+.|++++|.+.+..|. .+..+++|+++.++
T Consensus 275 n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 275 NQISD--I-SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLS 319 (347)
T ss_dssp SCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECC
T ss_pred CccCC--C-hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEcc
Confidence 99988 4 4578899999999999999866666 78888888888763
No 111
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=6.3e-14 Score=97.92 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=93.8
Q ss_pred CCCCCCCCccCcccc-CCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEc
Q 037597 1 MSANAIDNLVVPKDY-RGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 79 (130)
+++|.+++.. +..+ ..+++|++|++++|.++ .++ ....+++|+.|++++|.++ .++. .+..+++|+.|++
T Consensus 151 Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~-----~~~-~~~~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~L 221 (317)
T 3o53_A 151 LKLNEIDTVN-FAELAASSDTLEHLNLQYNFIY-----DVK-GQVVFAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISL 221 (317)
T ss_dssp CTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCC-----EEE-CCCCCTTCCEEECCSSCCC-EECG-GGGGGTTCSEEEC
T ss_pred CCCCCCCccc-HHHHhhccCcCCEEECCCCcCc-----ccc-cccccccCCEEECCCCcCC-cchh-hhcccCcccEEEC
Confidence 5788888755 5555 47899999999999992 333 3445899999999999998 5666 6888999999999
Q ss_pred cCCCCCCchhHHhhhcCCCCCEEeccCcccc-cccCcccccCcccceee
Q 037597 80 DESDLHVSQLLQSIASFTSLKYLSMQDSVLK-GALHGQGKLRVSEAFVI 127 (130)
Q Consensus 80 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~~l~~l~~l 127 (130)
++|.+.. +|..+..+++|+.+++++|++. +.+|. .+..++.++++
T Consensus 222 ~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~~~L~~l 267 (317)
T 3o53_A 222 RNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTV 267 (317)
T ss_dssp TTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHH-HHHTCHHHHHH
T ss_pred cCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHH-HHhccccceEE
Confidence 9999998 7888999999999999999998 66666 66666666554
No 112
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=1.2e-12 Score=92.16 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=79.1
Q ss_pred CCCCccCccccCCCCCCcEEEcCC-cccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCC
Q 037597 5 AIDNLVVPKDYRGLRKLNTLVLGG-TEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESD 83 (130)
Q Consensus 5 ~l~~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 83 (130)
.++. +|. +..+++|++|++++ |.+ ....+..++.+++|+.|++++|.+++..+. .|..+++|+.|+|++|.
T Consensus 20 ~l~~--ip~-l~~~~~L~~L~l~~~n~l----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 20 ALDS--LHH-LPGAENLTELYIENQQHL----QHLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CCTT--TTT-SCSCSCCSEEECCSCSSC----CEECGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCCEEECCSSC
T ss_pred CCCc--cCC-CCCCCCeeEEEccCCCCC----CCcChhHhccccCCCEEECCCCccceeCHH-HhcCCcCCCEEeCCCCc
Confidence 6765 487 99999999999996 998 455556789999999999999999966666 78999999999999999
Q ss_pred CCCchhHHhhhcCCCCCEEeccCcccc
Q 037597 84 LHVSQLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
+.. +|..+.....|+.|++.+|.+.
T Consensus 92 l~~--~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LES--LSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSC--CCSTTTCSCCCCEEECCSSCCC
T ss_pred cce--eCHHHcccCCceEEEeeCCCcc
Confidence 998 5554433334999999999887
No 113
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=4.5e-13 Score=98.78 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=93.9
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhc-CCCCCcEEEc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELH-NLTNLEELIL 79 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l 79 (130)
+++|.+++.. + ..+++|++|++++|.+ ++..|..++.+++|+.|++++|.+++..+. .+. .+++|++|++
T Consensus 106 L~~N~l~~~~-~---~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~~L~~L~L 176 (487)
T 3oja_A 106 AANNNISRVS-C---SRGQGKKNIYLANNKI----TMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNL 176 (487)
T ss_dssp CCSSCCCCEE-E---CCCSSCEEEECCSSCC----CSGGGBCGGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEEC
T ss_pred CcCCcCCCCC-c---cccCCCCEEECCCCCC----CCCCchhhcCCCCCCEEECCCCCCCCcChH-HHhhhCCcccEEec
Confidence 4677777633 3 3468899999999999 566677788899999999999999976666 665 7899999999
Q ss_pred cCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeeeC
Q 037597 80 DESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILIR 130 (130)
Q Consensus 80 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~~ 130 (130)
++|.+.+ .+. ...+++|+.|++++|.++ .+|. .+..++.|++|.+.
T Consensus 177 s~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~-~~~~-~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 177 QYNFIYD--VKG-QVVFAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLR 222 (487)
T ss_dssp TTSCCCE--EEC-CCCCTTCCEEECCSSCCC-EECG-GGGGGTTCSEEECT
T ss_pred CCCcccc--ccc-cccCCCCCEEECCCCCCC-CCCH-hHcCCCCccEEEec
Confidence 9999998 443 446899999999999999 5666 58888999888763
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=2.6e-13 Score=94.99 Aligned_cols=112 Identities=21% Similarity=0.236 Sum_probs=52.5
Q ss_pred ccccCCCCCCcEEEcCCc-ccccccCC-chhhhcCCCCCCCEEeccCC-CCCcc-cchHhhcCCC-CCcEEEccCC--CC
Q 037597 12 PKDYRGLRKLNTLVLGGT-EVAMIDGS-KALQSIGSLPSLKTLYLSYT-NFTGT-VINQELHNLT-NLEELILDES--DL 84 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n-~~~~~~~~-~~~~~~~~l~~L~~l~l~~~-~~~~~-~~~~~~~~l~-~L~~L~l~~n--~~ 84 (130)
+..+..+++|++|++++| .+ ++ .++..+..+++|+.|++++| .+++. ++. .+..++ +|++|++++| .+
T Consensus 135 ~~~l~~~~~L~~L~L~~~~~l----~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 135 VNTLAKNSNLVRLNLSGCSGF----SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp HHHHTTCTTCSEEECTTCBSC----CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGS
T ss_pred HHHHhcCCCCCEEECCCCCCC----CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccC
Confidence 444444555555555554 33 11 13333444455555555555 44421 222 344445 5555555555 33
Q ss_pred CCchhHHhhhcCCCCCEEeccCcc-cccccCcccccCcccceeeee
Q 037597 85 HVSQLLQSIASFTSLKYLSMQDSV-LKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 85 ~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~l~~l~~l~~ 129 (130)
.+..++..+..+++|+.|++++|. +++..+. .+..+++|++|.+
T Consensus 210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l 254 (336)
T 2ast_B 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSL 254 (336)
T ss_dssp CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEEC
T ss_pred CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeC
Confidence 311344445555556666665555 4434444 4555555555544
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=2.5e-15 Score=98.60 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=69.4
Q ss_pred ccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhh
Q 037597 14 DYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSI 93 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 93 (130)
.+..+++|++|++++|.+ .. +| .+..+++|+.|++++|.++ .+|. .+..+++|++|++++|.+.+ +| .+
T Consensus 43 ~~~~l~~L~~L~ls~n~l----~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~~~~~L~~L~L~~N~l~~--l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI----EK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIAS--LS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEE----SC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHHHHHHCSEEEEEEEECCC--HH-HH
T ss_pred HHhcCCCCCEEECCCCCC----cc-cc-ccccCCCCCEEECCCCCcc-cccc-hhhcCCcCCEEECcCCcCCc--CC-cc
Confidence 677788888888888887 23 44 6667778888888888777 5565 55555667777777777776 44 46
Q ss_pred hcCCCCCEEeccCcccccccCc-ccccCcccceeeee
Q 037597 94 ASFTSLKYLSMQDSVLKGALHG-QGKLRVSEAFVILI 129 (130)
Q Consensus 94 ~~~~~L~~L~l~~n~l~~~~p~-~~~~~l~~l~~l~~ 129 (130)
..+++|++|++++|.+. .++. ..+..+++|+++.+
T Consensus 112 ~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp HHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEE
T ss_pred ccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEe
Confidence 66666777777777666 3322 14555666666654
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=8.9e-13 Score=84.90 Aligned_cols=105 Identities=13% Similarity=0.178 Sum_probs=85.8
Q ss_pred ccCCCCCCcEEEcCCcccccccCCchhhhcCCC-CCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHH-
Q 037597 14 DYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSL-PSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQ- 91 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~- 91 (130)
.+....++++|++++|.+ . .++. +..+ ++|+.|++++|.+++ + . .+..+++|++|++++|.+.. +|.
T Consensus 14 ~~~~~~~L~~L~l~~n~l----~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~-~l~~l~~L~~L~Ls~N~l~~--~~~~ 82 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKI----P-VIEN-LGATLDQFDAIDFSDNEIRK-L-D-GFPLLRRLKTLLVNNNRICR--IGEG 82 (176)
T ss_dssp EEECTTSCEEEECTTSCC----C-SCCC-GGGGTTCCSEEECCSSCCCE-E-C-CCCCCSSCCEEECCSSCCCE--ECSC
T ss_pred hcCCcCCceEEEeeCCCC----c-hhHH-hhhcCCCCCEEECCCCCCCc-c-c-ccccCCCCCEEECCCCcccc--cCcc
Confidence 456788999999999999 3 3443 4444 499999999999984 4 4 68899999999999999998 554
Q ss_pred hhhcCCCCCEEeccCcccccccCc-ccccCcccceeeeeC
Q 037597 92 SIASFTSLKYLSMQDSVLKGALHG-QGKLRVSEAFVILIR 130 (130)
Q Consensus 92 ~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~l~~l~~l~~~ 130 (130)
.+..+++|++|++++|.+. .+|. ..+..+++|+++.+.
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECC
T ss_pred hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEec
Confidence 4589999999999999997 6665 367888899888763
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.34 E-value=2e-11 Score=89.23 Aligned_cols=84 Identities=25% Similarity=0.347 Sum_probs=34.5
Q ss_pred cCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhh
Q 037597 15 YRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIA 94 (130)
Q Consensus 15 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 94 (130)
+..+++|++|++++|.+ .. .++ +..+++|+.|++++|.+++ .+. +..+++|+.|++++|.+.+ ..| +.
T Consensus 261 ~~~l~~L~~L~l~~n~l----~~-~~~-~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~-~~~--~~ 328 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQI----SN-ISP-LAGLTALTNLELNENQLED-ISP--ISNLKNLTYLTLYFNNISD-ISP--VS 328 (466)
T ss_dssp GTTCTTCSEEECCSSCC----CC-CGG-GTTCTTCSEEECCSSCCSC-CGG--GGGCTTCSEEECCSSCCSC-CGG--GG
T ss_pred hhcCCCCCEEECCCCcc----Cc-ccc-ccCCCccCeEEcCCCcccC-chh--hcCCCCCCEEECcCCcCCC-chh--hc
Confidence 44444444444444444 11 111 3444444444444444442 221 3334444444444444444 111 33
Q ss_pred cCCCCCEEeccCcccc
Q 037597 95 SFTSLKYLSMQDSVLK 110 (130)
Q Consensus 95 ~~~~L~~L~l~~n~l~ 110 (130)
.+++|+.|++++|++.
T Consensus 329 ~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVS 344 (466)
T ss_dssp GCTTCCEEECCSSCCC
T ss_pred cCccCCEeECCCCccC
Confidence 4444444444444443
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.34 E-value=1.7e-11 Score=89.66 Aligned_cols=111 Identities=22% Similarity=0.331 Sum_probs=76.7
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++. ++ +..+++|++|++++|.+ .+. ++ +..+++|+.|++++|.+++. ++ +..+++|+.|+++
T Consensus 272 l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l----~~~-~~-~~~l~~L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 272 LGANQISNI--SP-LAGLTALTNLELNENQL----EDI-SP-ISNLKNLTYLTLYFNNISDI-SP--VSSLTKLQRLFFY 339 (466)
T ss_dssp CCSSCCCCC--GG-GTTCTTCSEEECCSSCC----SCC-GG-GGGCTTCSEEECCSSCCSCC-GG--GGGCTTCCEEECC
T ss_pred CCCCccCcc--cc-ccCCCccCeEEcCCCcc----cCc-hh-hcCCCCCCEEECcCCcCCCc-hh--hccCccCCEeECC
Confidence 356777652 33 77888888888888887 332 22 66778888888888887743 32 5567778888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+|.+.+ . ..+..+++|+.|++++|++++..| +..++.|+++.+
T Consensus 340 ~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l 382 (466)
T 1o6v_A 340 NNKVSD--V-SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGL 382 (466)
T ss_dssp SSCCCC--C-GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEEC
T ss_pred CCccCC--c-hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEec
Confidence 887777 3 457777788888888887775544 456666666654
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=7.8e-15 Score=96.25 Aligned_cols=115 Identities=19% Similarity=0.294 Sum_probs=92.9
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.++. +| .+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+++ ++ .+..+++|+.|+++
T Consensus 55 ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l-----~~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 55 LSTNNIEK--IS-SLSGMENLRILSLGRNLI-----KKIENLDAVADTLEELWISYNQIAS-LS--GIEKLVNLRVLYMS 123 (198)
T ss_dssp CSEEEESC--CC-CHHHHTTCCEEEEEEEEE-----CSCSSHHHHHHHCSEEEEEEEECCC-HH--HHHHHHHSSEEEES
T ss_pred CCCCCCcc--cc-ccccCCCCCEEECCCCCc-----ccccchhhcCCcCCEEECcCCcCCc-CC--ccccCCCCCEEECC
Confidence 46777776 47 888999999999999999 3566666777899999999999984 44 47788899999999
Q ss_pred CCCCCCchhH--HhhhcCCCCCEEeccCcccccccCc---------ccccCcccceeee
Q 037597 81 ESDLHVSQLL--QSIASFTSLKYLSMQDSVLKGALHG---------QGKLRVSEAFVIL 128 (130)
Q Consensus 81 ~n~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~p~---------~~~~~l~~l~~l~ 128 (130)
+|.+.. ++ ..+..+++|+++++++|.+.+.+|. ..+..+++|+++.
T Consensus 124 ~N~i~~--~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 124 NNKITN--WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEECCC--HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCcCCc--hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999998 44 3788999999999999999866554 1266777777663
No 120
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=8.1e-12 Score=87.98 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=80.8
Q ss_pred cEEEcCCc-ccccccCCchhhhcCCCCCCCEEeccC-CCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCC
Q 037597 22 NTLVLGGT-EVAMIDGSKALQSIGSLPSLKTLYLSY-TNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSL 99 (130)
Q Consensus 22 ~~L~l~~n-~~~~~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 99 (130)
..++.+++ .+ ..+|. +..+.+|+.|++++ |.+++..+. .|..+++|+.|+|++|.+.+ ..|..|..+++|
T Consensus 11 ~~v~~~~~n~l-----~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L 82 (347)
T 2ifg_A 11 SGLRCTRDGAL-----DSLHH-LPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRL 82 (347)
T ss_dssp SCEECCSSCCC-----TTTTT-SCSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCC
T ss_pred CEEEcCCCCCC-----CccCC-CCCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccce-eCHHHhcCCcCC
Confidence 35688887 78 45788 99999999999996 999855445 89999999999999999999 666688999999
Q ss_pred CEEeccCcccccccCcccccCcccceeeee
Q 037597 100 KYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 100 ~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+.|++++|+++ .+|...|..++ |++|.+
T Consensus 83 ~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 83 SRLNLSFNALE-SLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CEEECCSSCCS-CCCSTTTCSCC-CCEEEC
T ss_pred CEEeCCCCccc-eeCHHHcccCC-ceEEEe
Confidence 99999999999 55552565555 777765
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.32 E-value=1e-12 Score=93.83 Aligned_cols=126 Identities=19% Similarity=0.230 Sum_probs=86.7
Q ss_pred CCCCCCCCccCc---cccCCCCCCcEEEcCCcccccccCC-chhhhcCCCCCCCEEeccCCCCC----cccchHhhcCCC
Q 037597 1 MSANAIDNLVVP---KDYRGLRKLNTLVLGGTEVAMIDGS-KALQSIGSLPSLKTLYLSYTNFT----GTVINQELHNLT 72 (130)
Q Consensus 1 l~~n~l~~~~~p---~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~----~~~~~~~~~~l~ 72 (130)
+++|.++....| ..+..+++|++|++++|.++..|.. ..+..+..+++|+.|++++|.++ ..++. .+..++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~ 244 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWP 244 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCC
Confidence 456777632224 4566778888888888887210000 12336777888888888888885 35566 777888
Q ss_pred CCcEEEccCCCCCCch----hHHhhhc--CCCCCEEeccCccccc----ccCcccc-cCcccceeeee
Q 037597 73 NLEELILDESDLHVSQ----LLQSIAS--FTSLKYLSMQDSVLKG----ALHGQGK-LRVSEAFVILI 129 (130)
Q Consensus 73 ~L~~L~l~~n~~~~~~----~~~~~~~--~~~L~~L~l~~n~l~~----~~p~~~~-~~l~~l~~l~~ 129 (130)
+|++|++++|.+.+ . ++..+.. +++|+.|++++|.+.+ .+|. .+ .++++|++|.+
T Consensus 245 ~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 245 NLRELGLNDCLLSA-RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLEL 310 (386)
T ss_dssp TCCEEECTTCCCCH-HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEEC
T ss_pred CcCEEECCCCCCch-hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEc
Confidence 88888888888876 3 4555533 7888888888888885 3776 44 55777777765
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=1.3e-12 Score=92.76 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=67.6
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchh----hhcCCCC-CCCEEeccCCCCCcccchHhhcCC----
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKAL----QSIGSLP-SLKTLYLSYTNFTGTVINQELHNL---- 71 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~l---- 71 (130)
++.|.+++.+ |+.+...++|++|++++|.++ ...+ ..+..++ +|+.|++++|.+++..+. .+..+
T Consensus 5 ls~n~~~~~~-~~~~~~~~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~ 78 (362)
T 3goz_A 5 LTLHPGSNPV-EEFTSIPHGVTSLDLSLNNLY----SISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAI 78 (362)
T ss_dssp CCCCTTCCHH-HHHHTSCTTCCEEECTTSCGG----GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTS
T ss_pred cccccchHHH-HHHHhCCCCceEEEccCCCCC----hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhcc
Confidence 4667777755 655555566888888888873 3333 5566666 788888888877744343 44432
Q ss_pred -CCCcEEEccCCCCCCchhHHh----hhcC-CCCCEEeccCcccccc
Q 037597 72 -TNLEELILDESDLHVSQLLQS----IASF-TSLKYLSMQDSVLKGA 112 (130)
Q Consensus 72 -~~L~~L~l~~n~~~~~~~~~~----~~~~-~~L~~L~l~~n~l~~~ 112 (130)
++|++|++++|.+.+ ..+.. +..+ ++|+.|++++|.+.+.
T Consensus 79 ~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 79 PANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp CTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CCCccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 677888888877765 33332 3334 6777777777777633
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.29 E-value=2.9e-11 Score=88.57 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=72.4
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++ .| .+..+++|++|++++|.+ .+ ++ ++.+++|+.|++++|.+++ .+ +..+++|++|+++
T Consensus 49 Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l----~~-~~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 49 CHNSSITD--MT-GIEKLTGLTKLICTSNNI----TT-LD--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCD 114 (457)
T ss_dssp CCSSCCCC--CT-TGGGCTTCSEEECCSSCC----SC-CC--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECC
T ss_pred ccCCCccc--Ch-hhcccCCCCEEEccCCcC----Ce-Ec--cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEECC
Confidence 45677776 35 577888888888888887 23 33 6777888888888888774 22 5667778888888
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~ 128 (130)
+|.+.+ ++ ++.+++|++|++++|.+++ ++ +..+++|+++.
T Consensus 115 ~N~l~~--l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~ 154 (457)
T 3bz5_A 115 TNKLTK--LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELD 154 (457)
T ss_dssp SSCCSC--CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEE
T ss_pred CCcCCe--ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEE
Confidence 887777 43 6777777777777777774 32 34444444444
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=1.7e-12 Score=92.76 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=21.0
Q ss_pred CCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCC
Q 037597 16 RGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60 (130)
Q Consensus 16 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 60 (130)
..+++|++|++++|.++..+...++..+..+++|+.|++++|.++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 455555555555555510000024444445555555555555543
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.24 E-value=2.1e-11 Score=86.18 Aligned_cols=114 Identities=17% Similarity=0.253 Sum_probs=80.9
Q ss_pred CCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhh-hcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcE-EEcc
Q 037597 3 ANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQ-SIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEE-LILD 80 (130)
Q Consensus 3 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~-L~l~ 80 (130)
+++++. +|..+ .+++++|++++|.+ ..+|+ .+..+++|+.|++++|.+.+.++.+.|.+++++.. +.+.
T Consensus 18 ~~~Lt~--iP~~l--~~~l~~L~Ls~N~i-----~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 18 ESKVTE--IPSDL--PRNAIELRFVLTKL-----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp STTCCS--CCTTC--CTTCSEEEEESCCC-----SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CCCCCc--cCcCc--CCCCCEEEccCCcC-----CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 455654 47655 36789999999998 34444 57889999999999998865666536777877665 5566
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceee
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVI 127 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l 127 (130)
.|.+.. ..|..+..+++|+++++++|++. .+|...+....++..+
T Consensus 89 ~N~l~~-l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l 133 (350)
T 4ay9_X 89 ANNLLY-INPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLL 133 (350)
T ss_dssp ETTCCE-ECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEE
T ss_pred CCcccc-cCchhhhhccccccccccccccc-cCCchhhcccchhhhh
Confidence 788887 44667888899999999999888 4444245445444444
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.22 E-value=4.8e-11 Score=89.64 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=51.8
Q ss_pred CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcC
Q 037597 17 GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASF 96 (130)
Q Consensus 17 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 96 (130)
.+++|++|++++|.+ + .+|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.++. +|. +..
T Consensus 138 ~l~~L~~L~Ls~N~l----~-~lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~~--lp~-~~~- 200 (571)
T 3cvr_A 138 LPALLEYINADNNQL----T-MLPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLES--LPA-VPV- 200 (571)
T ss_dssp CCTTCCEEECCSSCC----S-CCCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCSS--CCC-CC--
T ss_pred cCccccEEeCCCCcc----C-cCCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCCc--hhh-HHH-
Confidence 355555556555555 1 2332 34556666666666652 443 22 566666666666665 444 332
Q ss_pred CCC-------CEEeccCcccccccCcccccCcccceeeee
Q 037597 97 TSL-------KYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 97 ~~L-------~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
+| +.|++++|.++ .+|. .+..+++|++|.+
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~-~lp~-~l~~l~~L~~L~L 237 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRIT-HIPE-NILSLDPTCTIIL 237 (571)
T ss_dssp --------CCEEEECCSSCCC-CCCG-GGGGSCTTEEEEC
T ss_pred -hhhcccccceEEecCCCcce-ecCH-HHhcCCCCCEEEe
Confidence 45 67777777776 5666 5555777766654
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.21 E-value=8.3e-11 Score=86.06 Aligned_cols=105 Identities=19% Similarity=0.234 Sum_probs=49.7
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.+++ +| ++..+++|++|++++|.++ .+|.. +.+|+.+++++|.+++ +|. +..+++|++|++++
T Consensus 139 ~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~-----~lp~~---~~~L~~L~L~~n~l~~-l~~--~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 139 SNNQLEK--LP-ELQNSSFLKIIDVDNNSLK-----KLPDL---PPSLEFIAAGNNQLEE-LPE--LQNLPFLTAIYADN 204 (454)
T ss_dssp CSSCCSS--CC-CCTTCTTCCEEECCSSCCS-----CCCCC---CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCS
T ss_pred cCCCCCC--Cc-ccCCCCCCCEEECCCCcCc-----ccCCC---cccccEEECcCCcCCc-Ccc--ccCCCCCCEEECCC
Confidence 4555554 24 4566666666666666652 22221 2355555555555542 332 44555555555555
Q ss_pred CCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcccceeee
Q 037597 82 SDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 82 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~ 128 (130)
|.+.+ +|.. .++|++|++++|.+. .+|. ++.+++|+++.
T Consensus 205 N~l~~--l~~~---~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~ 243 (454)
T 1jl5_A 205 NSLKK--LPDL---PLSLESIVAGNNILE-ELPE--LQNLPFLTTIY 243 (454)
T ss_dssp SCCSS--CCCC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEE
T ss_pred CcCCc--CCCC---cCcccEEECcCCcCC-cccc--cCCCCCCCEEE
Confidence 55444 2221 124444444444444 4443 44455555444
No 128
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.18 E-value=2.7e-10 Score=83.43 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=53.9
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEcc
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILD 80 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (130)
+++|.+++ +| ++.+++|++|++++|.+ .+ ++ ++.+++|++|++++|.+++ ++ +..+++|++|+++
T Consensus 71 Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l----~~-~~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 71 CTSNNITT--LD--LSQNTNLTYLACDSNKL----TN-LD--VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCA 135 (457)
T ss_dssp CCSSCCSC--CC--CTTCTTCSEEECCSSCC----SC-CC--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECT
T ss_pred ccCCcCCe--Ec--cccCCCCCEEECcCCCC----ce-ee--cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECC
Confidence 35666665 23 66777777777777777 22 22 6667777777777777763 22 5556667777777
Q ss_pred CCCCCCchhHHhhhcCCCCCEEeccCc
Q 037597 81 ESDLHVSQLLQSIASFTSLKYLSMQDS 107 (130)
Q Consensus 81 ~n~~~~~~~~~~~~~~~~L~~L~l~~n 107 (130)
+|.+.+ ++ ++.+++|++|++++|
T Consensus 136 ~N~l~~--l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 136 RNTLTE--ID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp TSCCSC--CC--CTTCTTCCEEECTTC
T ss_pred CCccce--ec--cccCCcCCEEECCCC
Confidence 666665 22 445555555555555
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.17 E-value=7.9e-12 Score=88.72 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=5.3
Q ss_pred CCcEEEcCCccc
Q 037597 20 KLNTLVLGGTEV 31 (130)
Q Consensus 20 ~L~~L~l~~n~~ 31 (130)
+|++|++++|.+
T Consensus 52 ~L~~L~Ls~N~l 63 (362)
T 3goz_A 52 SVTSLNLSGNSL 63 (362)
T ss_dssp TCCEEECCSSCG
T ss_pred ceeEEECcCCCC
Confidence 444444444444
No 130
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.13 E-value=6.2e-12 Score=91.28 Aligned_cols=60 Identities=17% Similarity=0.110 Sum_probs=25.7
Q ss_pred hcCCCCCcEEEccCCCCCCchhHHhhhc-----CCCCCEEeccCccccc----ccCcccccCcccceeeee
Q 037597 68 LHNLTNLEELILDESDLHVSQLLQSIAS-----FTSLKYLSMQDSVLKG----ALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 68 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~p~~~~~~l~~l~~l~~ 129 (130)
+..+++|++|++++|.+.+ .-+..+.. .++|+.|++++|.+++ .+|. .+..+++|+++.+
T Consensus 337 l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l 405 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDL 405 (461)
T ss_dssp HHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEEC
T ss_pred HhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEEC
Confidence 3334445555555554443 22222221 3445555555554443 3444 3444444444443
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.12 E-value=5.5e-10 Score=84.69 Aligned_cols=71 Identities=23% Similarity=0.219 Sum_probs=46.7
Q ss_pred CCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCccccee
Q 037597 47 PSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFV 126 (130)
Q Consensus 47 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~ 126 (130)
++|+.|++++|.++ .+|. .+++|+.|++++|.+.. +|. .+++|+.|++++|.++ .+|. .+.++++|++
T Consensus 221 ~~L~~L~Ls~N~L~-~lp~----~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~-~lp~-~l~~l~~L~~ 288 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLPV----LPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLT-RLPE-SLIHLSSETT 288 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCC-SCCG-GGGGSCTTCE
T ss_pred CCCCEEEccCCccC-cCCC----CCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCC-cCCH-HHhhccccCE
Confidence 45666666666655 2332 33567777777777666 454 5567777888888777 7777 6777777777
Q ss_pred eee
Q 037597 127 ILI 129 (130)
Q Consensus 127 l~~ 129 (130)
|.+
T Consensus 289 L~L 291 (622)
T 3g06_A 289 VNL 291 (622)
T ss_dssp EEC
T ss_pred EEe
Confidence 765
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.12 E-value=5.4e-11 Score=89.36 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=81.2
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCC------
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNL------ 74 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L------ 74 (130)
+++|.|++ +|. .+++|++|++++|.+ +. +|. +. ++|+.|++++|.++ .+|. +.. +|
T Consensus 147 Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L----~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~ 208 (571)
T 3cvr_A 147 ADNNQLTM--LPE---LPTSLEVLSVRNNQL----TF-LPE-LP--ESLEALDVSTNLLE-SLPA--VPV--RNHHSEET 208 (571)
T ss_dssp CCSSCCSC--CCC---CCTTCCEEECCSSCC----SC-CCC-CC--TTCCEEECCSSCCS-SCCC--CC----------C
T ss_pred CCCCccCc--CCC---cCCCcCEEECCCCCC----CC-cch-hh--CCCCEEECcCCCCC-chhh--HHH--hhhccccc
Confidence 46788876 364 578999999999999 33 666 55 89999999999998 6665 332 56
Q ss_pred -cEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcc
Q 037597 75 -EELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVS 122 (130)
Q Consensus 75 -~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~ 122 (130)
+.|++++|.++. +|..+..+++|+.|++++|++++.+|. .+..++
T Consensus 209 L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~ 254 (571)
T 3cvr_A 209 EIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRE-SLSQQT 254 (571)
T ss_dssp CEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHH-HHHHHH
T ss_pred ceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcCHH-HHHHhh
Confidence 999999999998 888888899999999999999988887 565543
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.05 E-value=1.7e-09 Score=79.11 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=46.6
Q ss_pred CCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCC
Q 037597 19 RKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTS 98 (130)
Q Consensus 19 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 98 (130)
++|++|++++|.+ . .+| .++.+++|+++++++|.++ .+|. . ..+|++|++++|.+.+ +| .++.+++
T Consensus 131 ~~L~~L~L~~n~l----~-~lp-~~~~l~~L~~L~l~~N~l~-~lp~-~---~~~L~~L~L~~n~l~~--l~-~~~~l~~ 196 (454)
T 1jl5_A 131 PLLEYLGVSNNQL----E-KLP-ELQNSSFLKIIDVDNNSLK-KLPD-L---PPSLEFIAAGNNQLEE--LP-ELQNLPF 196 (454)
T ss_dssp TTCCEEECCSSCC----S-SCC-CCTTCTTCCEEECCSSCCS-CCCC-C---CTTCCEEECCSSCCSS--CC-CCTTCTT
T ss_pred CCCCEEECcCCCC----C-CCc-ccCCCCCCCEEECCCCcCc-ccCC-C---cccccEEECcCCcCCc--Cc-cccCCCC
Confidence 3555555555555 2 233 3556666666666666665 2443 2 2356666666666665 44 4666666
Q ss_pred CCEEeccCcccccccCc
Q 037597 99 LKYLSMQDSVLKGALHG 115 (130)
Q Consensus 99 L~~L~l~~n~l~~~~p~ 115 (130)
|++|++++|.+. .+|.
T Consensus 197 L~~L~l~~N~l~-~l~~ 212 (454)
T 1jl5_A 197 LTAIYADNNSLK-KLPD 212 (454)
T ss_dssp CCEEECCSSCCS-SCCC
T ss_pred CCEEECCCCcCC-cCCC
Confidence 666666666666 3544
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.03 E-value=1.1e-10 Score=84.78 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=11.0
Q ss_pred ccccCCCCCCcEEEcCCccc
Q 037597 12 PKDYRGLRKLNTLVLGGTEV 31 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~ 31 (130)
+..+..+++|++|++++|.+
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBC
T ss_pred HHHHccCCceeEEECCCCcC
Confidence 44455555555555555555
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.01 E-value=2.5e-09 Score=81.09 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDE 81 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (130)
++|.++. +|..+. ++|++|++++|.+ ..+|. .+++|++|++++|.++ .+|. .+++|++|++++
T Consensus 48 s~n~L~~--lp~~l~--~~L~~L~L~~N~l-----~~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~ 110 (622)
T 3g06_A 48 GESGLTT--LPDCLP--AHITTLVIPDNNL-----TSLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFS 110 (622)
T ss_dssp CSSCCSC--CCSCCC--TTCSEEEECSCCC-----SCCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECS
T ss_pred cCCCcCc--cChhhC--CCCcEEEecCCCC-----CCCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcC
Confidence 4555553 354443 5666666666666 23333 3456666666666665 3333 334455555555
Q ss_pred CCCCC
Q 037597 82 SDLHV 86 (130)
Q Consensus 82 n~~~~ 86 (130)
|.+..
T Consensus 111 N~l~~ 115 (622)
T 3g06_A 111 NPLTH 115 (622)
T ss_dssp CCCCC
T ss_pred CcCCC
Confidence 55444
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.99 E-value=3e-10 Score=80.29 Aligned_cols=119 Identities=19% Similarity=0.239 Sum_probs=67.6
Q ss_pred CCCCCCccCccccCCCCCCcEEEcCCcccccccCCc--------------------hh-hhcCCC-CCCCEEeccCCCCC
Q 037597 3 ANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSK--------------------AL-QSIGSL-PSLKTLYLSYTNFT 60 (130)
Q Consensus 3 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~--------------------~~-~~~~~l-~~L~~l~l~~~~~~ 60 (130)
+|.+.... |..+..+++|++|++++|.++.+.... ++ ..+..+ ..++.+++++|.++
T Consensus 89 ~N~l~~l~-~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYIN-PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEEC-TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccC-chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 35555433 666777777777777777663211000 00 011111 23555666666665
Q ss_pred cccchHhhcCCCCCcEEEccC-CCCCCchhHH-hhhcCCCCCEEeccCcccccccCcccccCcccceee
Q 037597 61 GTVINQELHNLTNLEELILDE-SDLHVSQLLQ-SIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVI 127 (130)
Q Consensus 61 ~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l 127 (130)
.++. ......+++.+.+.+ |.+.. +|. .|..+++|++|++++|+++ .+|...+.+++.|+.+
T Consensus 168 -~i~~-~~f~~~~L~~l~l~~~n~l~~--i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 168 -EIHN-SAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRAR 231 (350)
T ss_dssp -EECT-TSSTTEEEEEEECTTCTTCCC--CCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECT
T ss_pred -CCCh-hhccccchhHHhhccCCcccC--CCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhhc
Confidence 4444 333344566666654 44555 443 5677888888888888888 6666466777666554
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=2.8e-09 Score=74.64 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=85.9
Q ss_pred CCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCc-EEEccCCCCCCchhHHhhhcC
Q 037597 18 LRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLE-ELILDESDLHVSQLLQSIASF 96 (130)
Q Consensus 18 l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~ 96 (130)
+++|+.+++.+|.++ ..-+..|..+.+|+.+++..| ++ .++...|.++.+|+ .+.+.. .+.. .-+.+|..+
T Consensus 225 ~~~L~~l~L~~n~i~----~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT----TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCC----EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTC
T ss_pred cCCCeEEECCCCCcc----eecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceE-EchhhhhCC
Confidence 789999999999983 333346888999999999998 66 45554899999999 999988 6776 445689999
Q ss_pred CCCCEEeccCcccccccCcccccCcccceeeee
Q 037597 97 TSLKYLSMQDSVLKGALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~~ 129 (130)
++|+.+++..|.+. .++...|.++++|+.++.
T Consensus 297 ~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 297 DNLRYVLATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTEEEEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred ccCCEEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence 99999999999999 666668999999999875
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.87 E-value=4.4e-10 Score=80.38 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=39.3
Q ss_pred CCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcc----cchHhhcCCCCCcEEEccCCCCCCc---hhHH
Q 037597 19 RKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGT----VINQELHNLTNLEELILDESDLHVS---QLLQ 91 (130)
Q Consensus 19 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~ 91 (130)
++|++|++++|.+++.+...++..+...++|+.|++++|.++.. +.. .+...++|++|++++|.+++. .+..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 44555555555542111111223334445555555555554411 112 334444555555555555430 1122
Q ss_pred hhhcCCCCCEEeccCcccc
Q 037597 92 SIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 92 ~~~~~~~L~~L~l~~n~l~ 110 (130)
.+...++|++|++++|.+.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHCSSCCEEECTTSSCC
T ss_pred HHHhCCCCCEEeccCCCCC
Confidence 2334455555555555544
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.85 E-value=1.8e-09 Score=77.19 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=85.7
Q ss_pred CCCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhh----c-CCCCCCCEEeccCCCCCcc----cchHhhcCC
Q 037597 1 MSANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQS----I-GSLPSLKTLYLSYTNFTGT----VINQELHNL 71 (130)
Q Consensus 1 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~----~-~~l~~L~~l~l~~~~~~~~----~~~~~~~~l 71 (130)
|++|.++...+......++++++|++++|.+ +...... + ...+.|+.|++++|.++.. +.. .+...
T Consensus 108 Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l----~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~ 182 (372)
T 3un9_A 108 LASCQLDPAGLRTLLPVFLRARKLGLQLNSL----GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGN 182 (372)
T ss_dssp CTTCCCCHHHHHHTHHHHHTEEEEECCSSCC----CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTC
T ss_pred ecCCCCCHHHHHHHHHHHHhccHhhcCCCCC----CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcC
Confidence 4677776543122223467899999999999 3332233 3 3568899999999998731 333 45778
Q ss_pred CCCcEEEccCCCCCCc---hhHHhhhcCCCCCEEeccCcccccc----cCcccccCcccceeeee
Q 037597 72 TNLEELILDESDLHVS---QLLQSIASFTSLKYLSMQDSVLKGA----LHGQGKLRVSEAFVILI 129 (130)
Q Consensus 72 ~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~~l~~l~~l~~ 129 (130)
++|++|++++|.+.+. .++..+...++|+.|++++|.+... ++. .+...+.|++|.+
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~-~L~~~~~L~~L~L 246 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHL 246 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH-HHHHCSSCCEEEC
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH-HHHhCCCCCEEec
Confidence 8999999999998861 2345677888999999999998732 223 3445677777765
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=3.2e-08 Score=69.28 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=56.6
Q ss_pred CCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCC-EEeccCcccccccCcccccCcccc
Q 037597 46 LPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLK-YLSMQDSVLKGALHGQGKLRVSEA 124 (130)
Q Consensus 46 l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~p~~~~~~l~~l 124 (130)
++.|+.+++++|.++ .+++..|.++.+|+.+.+..| +.. .-+.+|..+.+|+ .+++.. .+. .++...|.+|++|
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccC
Confidence 567888888887777 555546788888888888776 665 3345677888888 888876 555 5554478888888
Q ss_pred eeeee
Q 037597 125 FVILI 129 (130)
Q Consensus 125 ~~l~~ 129 (130)
+++.+
T Consensus 300 ~~l~l 304 (329)
T 3sb4_A 300 RYVLA 304 (329)
T ss_dssp EEEEE
T ss_pred CEEEe
Confidence 87765
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.74 E-value=1.5e-08 Score=75.52 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=69.3
Q ss_pred ccCCCCCCcEEEcCCcc--cccccCCchhhhcC-CCCCCCEEeccCCCCCcc-cchHhhcCCCCCcEEEccCCCCCCchh
Q 037597 14 DYRGLRKLNTLVLGGTE--VAMIDGSKALQSIG-SLPSLKTLYLSYTNFTGT-VINQELHNLTNLEELILDESDLHVSQL 89 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~ 89 (130)
.+.++++|++|++++|. + ++..+..+. .+++|+.|++++|.+++. ++. .+..+++|+.|++++|.+++..+
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l----~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGL----TDLGLSYIGQYSPNVRWMLLGYVGESDEGLME-FSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGC----CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH-HHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHhCCCCCEEEEecCCCCc----cHHHHHHHHHhCccceEeeccCCCCCHHHHHH-HHhcCcccCeeeccCCCCcHHHH
Confidence 35668888899886543 4 333344443 478899999999998742 344 56788999999999999876234
Q ss_pred HHhhhcCCCCCEEeccCcccccc
Q 037597 90 LQSIASFTSLKYLSMQDSVLKGA 112 (130)
Q Consensus 90 ~~~~~~~~~L~~L~l~~n~l~~~ 112 (130)
+..+..+++|+.|++++|+++..
T Consensus 506 ~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhcCccCeeECcCCcCCHH
Confidence 55567899999999999998744
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.73 E-value=1.2e-08 Score=66.21 Aligned_cols=114 Identities=14% Similarity=0.083 Sum_probs=75.5
Q ss_pred ccCCCCCCcEEEcCCc-ccccccCCchhhhcCCCCCCCEEeccCCCCCcc----cchHhhcCCCCCcEEEccCCCCCCc-
Q 037597 14 DYRGLRKLNTLVLGGT-EVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGT----VINQELHNLTNLEELILDESDLHVS- 87 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~- 87 (130)
.+...++|++|++++| .+++-|-..+...+...++|+.|++++|.+... +.. .+...+.|++|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHHH
Confidence 4456788999999988 773111122455667778899999999988632 222 455567888999999988861
Q ss_pred --hhHHhhhcCCCCCEEec--cCcccccc----cCcccccCcccceeeee
Q 037597 88 --QLLQSIASFTSLKYLSM--QDSVLKGA----LHGQGKLRVSEAFVILI 129 (130)
Q Consensus 88 --~~~~~~~~~~~L~~L~l--~~n~l~~~----~p~~~~~~l~~l~~l~~ 129 (130)
.+...+...++|++|++ ++|.+... +.. .+...+.|++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L 158 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGY 158 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEEC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEec
Confidence 13455667788899999 77877733 222 3444466666655
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.61 E-value=8.8e-08 Score=65.68 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=32.9
Q ss_pred CCCCCCEEeccCCCCCc--ccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCC--CCCEEeccCcccccccC
Q 037597 45 SLPSLKTLYLSYTNFTG--TVINQELHNLTNLEELILDESDLHVSQLLQSIASFT--SLKYLSMQDSVLKGALH 114 (130)
Q Consensus 45 ~l~~L~~l~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~p 114 (130)
.+++|+.|++++|.+++ .++. .+..+++|+.|+|++|.+.+ . ..+..++ .|++|++++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcceEEccCCcCccccC
Confidence 34555555555555553 2223 34455555555665555555 1 2222222 55555555555554443
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=2.8e-08 Score=64.41 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=72.7
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcc----cchHhhcCCCCCcEEEc--cCCCCC
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGT----VINQELHNLTNLEELIL--DESDLH 85 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~l~~L~~L~l--~~n~~~ 85 (130)
...+...++|++|++++|.+++-|-..+...+...++|+.|++++|.+... +.. .+...++|++|++ ++|.+.
T Consensus 58 ~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 58 AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE-ALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH-GGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH-HHHhCCCceEEEecCCCCCCC
Confidence 445667789999999999993211112445566678999999999999732 233 5677789999999 889998
Q ss_pred Cc---hhHHhhhcCCCCCEEeccCcccc
Q 037597 86 VS---QLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 86 ~~---~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
+. .+...+...++|+.|++++|.+.
T Consensus 137 ~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 137 NNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 72 13345667799999999999875
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.58 E-value=1.1e-07 Score=70.90 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=46.5
Q ss_pred CCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCC----cccchHhhcCCCCCcEEEccCCCCCCchhHHh
Q 037597 17 GLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT----GTVINQELHNLTNLEELILDESDLHVSQLLQS 92 (130)
Q Consensus 17 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 92 (130)
.+++|++|++++|.++..+...++.....+++|+.|++++|.++ ..++. .+..+++|+.|.+++|.+.+ ++..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~--l~~~ 238 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE--LVGF 238 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG--GHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH--HHHH
Confidence 45666666666666521111113333445566666666666654 12222 34456666666666666655 5555
Q ss_pred hhcCCCCCEEecc
Q 037597 93 IASFTSLKYLSMQ 105 (130)
Q Consensus 93 ~~~~~~L~~L~l~ 105 (130)
+..+++|+.++++
T Consensus 239 ~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 239 FKAAANLEEFCGG 251 (592)
T ss_dssp HHHCTTCCEEEEC
T ss_pred HhhhhHHHhhccc
Confidence 6666666666654
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.52 E-value=1.5e-08 Score=75.57 Aligned_cols=104 Identities=18% Similarity=0.171 Sum_probs=48.6
Q ss_pred CCCCCcEEEcCCc-ccccccCCc-hhhhcCCCCCCCEEeccCCCCCcccchHhhc----CCCCCcEEEccCCC--CCCch
Q 037597 17 GLRKLNTLVLGGT-EVAMIDGSK-ALQSIGSLPSLKTLYLSYTNFTGTVINQELH----NLTNLEELILDESD--LHVSQ 88 (130)
Q Consensus 17 ~l~~L~~L~l~~n-~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~----~l~~L~~L~l~~n~--~~~~~ 88 (130)
.+++|++|++++| .+ +.. ++.....+++|+.|++++|.+++..+. ++. .+++|+.|++++|. +....
T Consensus 128 ~~~~L~~L~L~~~~~~----~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGF----STDGLAAIAATCRNLKELDLRESDVDDVSGH-WLSHFPDTYTSLVSLNISCLASEVSFSA 202 (594)
T ss_dssp HCTTCCEEEEESCEEE----EHHHHHHHHHHCTTCCEEECTTCEEECCCGG-GGGGSCTTCCCCCEEECTTCCSCCCHHH
T ss_pred hCCCCcEEeCCCcCCC----CHHHHHHHHHhCCCCCEEeCcCCccCCcchH-HHHHHhhcCCcCcEEEecccCCcCCHHH
Confidence 3555666666555 33 111 223333455666666666655432222 222 44566666666654 32211
Q ss_pred hHHhhhcCCCCCEEeccCc-ccccccCcccccCcccceee
Q 037597 89 LLQSIASFTSLKYLSMQDS-VLKGALHGQGKLRVSEAFVI 127 (130)
Q Consensus 89 ~~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~~l~~l~~l 127 (130)
+...+..+++|+.|++++| .+. .+|. .+.++++|+++
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~-~l~~-~~~~~~~L~~L 240 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLE-KLAT-LLQRAPQLEEL 240 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHH-HHHH-HHHHCTTCSEE
T ss_pred HHHHHHhCCCCcEEecCCCCcHH-HHHH-HHhcCCcceEc
Confidence 2223345566666666665 232 2443 34444444444
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.50 E-value=2e-07 Score=63.93 Aligned_cols=85 Identities=24% Similarity=0.256 Sum_probs=63.8
Q ss_pred CCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhH-----
Q 037597 16 RGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLL----- 90 (130)
Q Consensus 16 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----- 90 (130)
..+++|+.|++++|.++.+ ..++..+..+++|+.|++++|.+++...-..+..+ +|++|.+.+|++.+ .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l--~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~-~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD-TFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC--GGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG-GCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCC--ccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc-ccCcchhH
Confidence 3578999999999999422 14456667899999999999999853111134444 89999999999875 332
Q ss_pred --HhhhcCCCCCEEec
Q 037597 91 --QSIASFTSLKYLSM 104 (130)
Q Consensus 91 --~~~~~~~~L~~L~l 104 (130)
..+..+++|+.||-
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 35788999999973
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=4.3e-07 Score=58.54 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=67.9
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCC-CCcccchHhhcCC----CCCcEEEccCCC-CC
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTN-FTGTVINQELHNL----TNLEELILDESD-LH 85 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~l----~~L~~L~l~~n~-~~ 85 (130)
|.....-..|++||++++.++ ..--..+..+++|+.|+++++. ++...-. .+..+ ++|++|++++|. ++
T Consensus 54 P~~~~~~~~L~~LDLs~~~It----d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIM----SIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCC----GGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCC
T ss_pred CcccCCCceEeEEeCcCCCcc----HHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCC
Confidence 543334467999999999984 4444567889999999999995 6532222 45553 369999999986 88
Q ss_pred CchhHHhhhcCCCCCEEeccCcc
Q 037597 86 VSQLLQSIASFTSLKYLSMQDSV 108 (130)
Q Consensus 86 ~~~~~~~~~~~~~L~~L~l~~n~ 108 (130)
+ .--..+.++++|+.|+++++.
T Consensus 129 D-~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 129 D-KGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp H-HHHHHGGGCTTCCEEEEESCT
T ss_pred H-HHHHHHhcCCCCCEEECCCCC
Confidence 7 444567899999999999874
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.39 E-value=3.7e-08 Score=73.43 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=37.0
Q ss_pred CCCCCCEEeccCCCCCcccchHhhcC-CCCCcEEEccCCCCCCchhHHhh-hcCCCCCEEeccCcccccccCcccccCcc
Q 037597 45 SLPSLKTLYLSYTNFTGTVINQELHN-LTNLEELILDESDLHVSQLLQSI-ASFTSLKYLSMQDSVLKGALHGQGKLRVS 122 (130)
Q Consensus 45 ~l~~L~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~l~ 122 (130)
.+++|+.|++++ .++..... .+.. +++|+.|++++|.+++ .-+..+ ..+++|+.|++++|.+++..+......++
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~-~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFE-YIGTYAKKMEMLSVAFAGDSD-LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHH-HHHHHCTTCCEEEEESCCSSH-HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred hCCCccEEeecC-cccHHHHH-HHHHhchhccEeeccCCCCcH-HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 344555555544 33322222 2222 4556666666666554 222222 45566666666666554222211223345
Q ss_pred cceeeee
Q 037597 123 EAFVILI 129 (130)
Q Consensus 123 ~l~~l~~ 129 (130)
+|++|.+
T Consensus 507 ~L~~L~l 513 (594)
T 2p1m_B 507 TMRSLWM 513 (594)
T ss_dssp GSSEEEE
T ss_pred CCCEEee
Confidence 5555443
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.17 E-value=9.8e-06 Score=58.43 Aligned_cols=112 Identities=8% Similarity=0.058 Sum_probs=69.0
Q ss_pred ccccCCCCCCcEEEcCCcccccccC-CchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhH
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDG-SKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLL 90 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 90 (130)
+.+|.++++|+.+.+.++.+..... ..-+..|..+.+|+.+++..+ ++ .++...|.+|.+|+.+.+..+ +.. .-.
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~-~I~~~aF~~c~~L~~l~lp~~-l~~-I~~ 339 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR-ILGQGLLGGNRKVTQLTIPAN-VTQ-INF 339 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCCSCCEEEECTT-CCE-ECT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE-EEhhhhhcCCCCccEEEECcc-ccE-EcH
Confidence 5566677778888777665410000 122335667777888887743 55 444437777888888888554 554 334
Q ss_pred HhhhcCCCCCEEeccCcccccccCcccccCcc-cceeeee
Q 037597 91 QSIASFTSLKYLSMQDSVLKGALHGQGKLRVS-EAFVILI 129 (130)
Q Consensus 91 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~-~l~~l~~ 129 (130)
.+|..+ +|+.+++.+|.+. .++...|..+. .+..+++
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEE
T ss_pred HhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEe
Confidence 567777 8888888887766 45444566663 5555554
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.02 E-value=2.9e-05 Score=55.99 Aligned_cols=110 Identities=13% Similarity=0.079 Sum_probs=63.9
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCC---------
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDES--------- 82 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n--------- 82 (130)
+.+|.++++|+.+++..|.++ .++........|+.+.+..+ ++ .++...|.++.+|+.+.+..+
T Consensus 173 ~~aF~~c~~L~~l~l~~n~l~-----~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF 245 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKTKIT-----KLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAF 245 (401)
T ss_dssp SSTTTTCTTCCEEECTTSCCS-----EECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTT
T ss_pred HHHhhCcccCCeeecCCCcce-----EechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCccCcccccc
Confidence 456778888888888887773 33332223456666666644 33 333335666666666666543
Q ss_pred ------------CCCCchhHHhhhcCCCCCEEeccCcccc----cccCcccccCcccceeeee
Q 037597 83 ------------DLHVSQLLQSIASFTSLKYLSMQDSVLK----GALHGQGKLRVSEAFVILI 129 (130)
Q Consensus 83 ------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~p~~~~~~l~~l~~l~~ 129 (130)
.+.. .-..+|..+++|+.+++.+|.+. ..++...|..|++|+.+.+
T Consensus 246 ~~~~L~~i~lp~~i~~-I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 246 RESGITTVKLPNGVTN-IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp TTCCCSEEEEETTCCE-ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred ccCCccEEEeCCCccE-EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 2222 12345667777777777665443 1244446777777776654
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.98 E-value=5.1e-06 Score=59.23 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=34.8
Q ss_pred CCCCCcEEEccCCCCCCchhHHhhh---cCCCCCEEeccCcccccc----cCcccccCcccceeeee
Q 037597 70 NLTNLEELILDESDLHVSQLLQSIA---SFTSLKYLSMQDSVLKGA----LHGQGKLRVSEAFVILI 129 (130)
Q Consensus 70 ~l~~L~~L~l~~n~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~----~p~~~~~~l~~l~~l~~ 129 (130)
.+++|++|.+.+|.+.+ ..+..+. .+++|++|+++.|.+.+. ++. .+.+++.|+.|.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~-~L~~l~~L~~L~L 314 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLD-HVDKIKHLKFINM 314 (362)
T ss_dssp TCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT-THHHHTTCSEEEC
T ss_pred CCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh-hcccCCcceEEEC
Confidence 35677777777777665 3333333 466778888877777642 333 3345566666554
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=9.1e-06 Score=52.34 Aligned_cols=80 Identities=6% Similarity=0.070 Sum_probs=59.1
Q ss_pred CCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCC-CCCchhHHhhhcC----CCCCEEeccCcc-cccccCcccccC
Q 037597 47 PSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESD-LHVSQLLQSIASF----TSLKYLSMQDSV-LKGALHGQGKLR 120 (130)
Q Consensus 47 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~----~~L~~L~l~~n~-l~~~~p~~~~~~ 120 (130)
..|+.+|++++.++..--. .+.++++|++|++++|. +++ .--..+..+ ++|++|++++|. ++..=-. .+.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGG
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhc
Confidence 4799999999998744334 57889999999999996 777 444556664 479999999974 6522112 4566
Q ss_pred cccceeeee
Q 037597 121 VSEAFVILI 129 (130)
Q Consensus 121 l~~l~~l~~ 129 (130)
+++|++|.+
T Consensus 138 ~~~L~~L~L 146 (176)
T 3e4g_A 138 FRNLKYLFL 146 (176)
T ss_dssp CTTCCEEEE
T ss_pred CCCCCEEEC
Confidence 788888765
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.62 E-value=3e-05 Score=55.25 Aligned_cols=92 Identities=23% Similarity=0.239 Sum_probs=57.5
Q ss_pred CCCCCcEEEcCC--ccc-ccccCCchhhhc--CCCCCCCEEeccCCCCCcccchHhh---cCCCCCcEEEccCCCCCCch
Q 037597 17 GLRKLNTLVLGG--TEV-AMIDGSKALQSI--GSLPSLKTLYLSYTNFTGTVINQEL---HNLTNLEELILDESDLHVSQ 88 (130)
Q Consensus 17 ~l~~L~~L~l~~--n~~-~~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~ 88 (130)
.+++|++|+++. +.. ...+-..+.+.+ ..+++|+.|++.+|.+...... .+ ..+++|++|+++.|.+.+ .
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d-~ 294 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTD-E 294 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBH-H
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCCh-H
Confidence 577888887743 221 000000111222 2478899999988887633222 22 246789999999998887 3
Q ss_pred ----hHHhhhcCCCCCEEeccCcccc
Q 037597 89 ----LLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 89 ----~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
++..+..+++|+.|+++.|.++
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhhcccCCcceEEECCCCcCC
Confidence 2333456789999999999876
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.56 E-value=0.00051 Score=49.00 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=47.6
Q ss_pred ccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhh
Q 037597 14 DYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSI 93 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 93 (130)
+|.+...|+.+.+..+.. ..-...+..+..|+.+.+..+ ++ .++...|.+|.+|+.+.+..+ ++. .-..+|
T Consensus 260 aF~~c~~L~~i~lp~~~~-----~I~~~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF 330 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-----SIGTGAFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQ-ILDDAF 330 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-----EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCE-ECTTTT
T ss_pred eeeecccccEEecccccc-----eecCcccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCCc-ccE-ehHhHh
Confidence 444555666666544322 111123444555555555422 22 233324555555555555432 332 112345
Q ss_pred hcCCCCCEEeccCcccccccCcccccCcccceeee
Q 037597 94 ASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 94 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~ 128 (130)
..|.+|+.+.+..+ +. .+....|.+|++|+.+.
T Consensus 331 ~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIE 363 (394)
T ss_dssp TTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEE
T ss_pred hCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEE
Confidence 55555555555432 33 34433555555555543
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.43 E-value=0.00033 Score=45.84 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=58.0
Q ss_pred CCCCCcEEEcCCc-ccccccCCchhhhcCCCCCCCEEeccCCCCCcc----cchHhhcCCCCCcEEEccCCCCCCc---h
Q 037597 17 GLRKLNTLVLGGT-EVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGT----VINQELHNLTNLEELILDESDLHVS---Q 88 (130)
Q Consensus 17 ~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~---~ 88 (130)
.-++|++|+++++ .+.+-|-..+...+..=++|+.|++++|.+... +.. .+..-+.|++|+|+.|.+.+. .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~-aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE-LIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH-HHhcCCccCeEecCCCcCCHHHHHH
Confidence 4467888888875 662111112455666677888999988888621 222 454556788889988888761 1
Q ss_pred hHHhhhcCCCCCEEeccCc
Q 037597 89 LLQSIASFTSLKYLSMQDS 107 (130)
Q Consensus 89 ~~~~~~~~~~L~~L~l~~n 107 (130)
+.+.+..-+.|+.|++++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2234445567888888754
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.38 E-value=0.0012 Score=46.69 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=52.9
Q ss_pred cCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhh
Q 037597 15 YRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIA 94 (130)
Q Consensus 15 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 94 (130)
+.....|+.+.+..+ ++.| -...+.....|+.+.+..+ ++ .++...|.++.+|+.+.+.++.+.. .-..+|.
T Consensus 236 f~~~~~L~~i~lp~~-v~~I----~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~aF~ 307 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSI----GSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIET-LEPRVFM 307 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEE----CTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCE-ECTTTTT
T ss_pred ccCCccceEEEcCCC-ccEe----Cccccceeehhcccccccc-ce-eccccccccccccccccccccccce-ehhhhhc
Confidence 344455555555443 3111 1123444555666655443 22 2332256666666666666665554 2234566
Q ss_pred cCCCCCEEeccCcccccccCcccccCcccceeee
Q 037597 95 SFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 95 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~ 128 (130)
.+.+|+.+.+..+ +. .+....|.+|++|+.+.
T Consensus 308 ~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 308 DCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTIS 339 (379)
T ss_dssp TCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCC
T ss_pred CCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEE
Confidence 6666666666533 33 44444566666666554
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.36 E-value=0.00074 Score=48.16 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=58.0
Q ss_pred ccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhh
Q 037597 14 DYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSI 93 (130)
Q Consensus 14 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 93 (130)
.+....+|+.+.+..+ ++.| -...+..+.+|+.+++..+ ++ .+...+|.+|.+|+.+.+..+ +.. .-..+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I----~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF 362 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFI----GEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRK-IGANAF 362 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEE----CTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCE-ECTTTB
T ss_pred cccccccccccccccc-ccee----chhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccE-ehHHHh
Confidence 3445566666666543 3211 1234556677777777644 44 333336777777777777655 444 223466
Q ss_pred hcCCCCCEEeccCcccccccCcccccCcccceee
Q 037597 94 ASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVI 127 (130)
Q Consensus 94 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l 127 (130)
..+.+|+.+++..+ +. .+.. .|.++++|+.+
T Consensus 363 ~~C~~L~~i~lp~~-~~-~~~~-~F~~c~~L~~I 393 (394)
T 4fs7_A 363 QGCINLKKVELPKR-LE-QYRY-DFEDTTKFKWI 393 (394)
T ss_dssp TTCTTCCEEEEEGG-GG-GGGG-GBCTTCEEEEE
T ss_pred hCCCCCCEEEECCC-CE-Ehhh-eecCCCCCcEE
Confidence 77777777777543 22 3444 56777766654
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.24 E-value=0.0017 Score=46.22 Aligned_cols=81 Identities=15% Similarity=0.055 Sum_probs=59.6
Q ss_pred cCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCcccccccCcccccCcc
Q 037597 43 IGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDSVLKGALHGQGKLRVS 122 (130)
Q Consensus 43 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~ 122 (130)
+..+..|+.+.+..+ ++ .+++.+|.++.+|+.+.+..+ +.. .-..+|..+.+|+.+++..+ +. .+....|.+|.
T Consensus 293 F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~ 366 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEE-IGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCI 366 (394)
T ss_dssp TTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCT
T ss_pred ccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccE-EhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCC
Confidence 455677888887665 44 344437888999999999754 555 33457889999999999766 55 66666899999
Q ss_pred cceeeee
Q 037597 123 EAFVILI 129 (130)
Q Consensus 123 ~l~~l~~ 129 (130)
+|+.+.+
T Consensus 367 ~L~~i~l 373 (394)
T 4fs7_A 367 NLKKVEL 373 (394)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 9988765
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.00098 Score=40.56 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=22.5
Q ss_pred CCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCC
Q 037597 47 PSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLH 85 (130)
Q Consensus 47 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 85 (130)
..++.|++++|.++ .++.+.|..+++|+.+.|.+|++.
T Consensus 31 ~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 34666666666666 344324556666666666666654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.94 E-value=0.0015 Score=42.68 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=67.2
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccch---HhhcCCCCCcEEEccCC---CCC
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVIN---QELHNLTNLEELILDES---DLH 85 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~n---~~~ 85 (130)
-+.+..-++|++|++++|.+.+-|-..+...+..=.+|+.|++++|.+...-.. +.+..-..|++|.++++ .+.
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig 142 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG 142 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcC
Confidence 345566788999999999994332233444555568899999999999732111 14555567999999865 445
Q ss_pred Cc---hhHHhhhcCCCCCEEeccCcccc
Q 037597 86 VS---QLLQSIASFTSLKYLSMQDSVLK 110 (130)
Q Consensus 86 ~~---~~~~~~~~~~~L~~L~l~~n~l~ 110 (130)
.. .+...+..-+.|+.++++.|.+.
T Consensus 143 ~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 143 NQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 40 23345666688999999877543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.91 E-value=0.0035 Score=44.28 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=70.2
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHH
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQ 91 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 91 (130)
..++.+..+++.+.+..+ ++ ..-...+..+.+|+.+.+.++.++ .+++..|.+|.+|+.+.+..+ ++. .-..
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~----~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~ 327 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VK----TVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKT-IQVY 327 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CS----EECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCE-ECTT
T ss_pred ccccceeehhcccccccc-ce----eccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccE-EHHH
Confidence 345567788888888654 41 222245678899999999988887 455448999999999999754 554 2235
Q ss_pred hhhcCCCCCEEeccCcccccccCcccccCcc
Q 037597 92 SIASFTSLKYLSMQDSVLKGALHGQGKLRVS 122 (130)
Q Consensus 92 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~ 122 (130)
+|.++.+|+.+.+..+ +. .+....|.+++
T Consensus 328 aF~~C~~L~~i~ip~~-v~-~I~~~aF~~c~ 356 (379)
T 4h09_A 328 AFKNCKALSTISYPKS-IT-LIESGAFEGSS 356 (379)
T ss_dssp TTTTCTTCCCCCCCTT-CC-EECTTTTTTSS
T ss_pred HhhCCCCCCEEEECCc-cC-EEchhHhhCCC
Confidence 7888999998888654 44 45444565554
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.90 E-value=0.0049 Score=43.90 Aligned_cols=104 Identities=12% Similarity=0.116 Sum_probs=70.5
Q ss_pred ccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCCcccchHhhcCCCCCcEEEccCCCCCCchhHH
Q 037597 12 PKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFTGTVINQELHNLTNLEELILDESDLHVSQLLQ 91 (130)
Q Consensus 12 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 91 (130)
..++.+.+.|+.+.+.. .++. .-...|..+.+|+.+.+..+ ++ .+...+|.+|.+|+.+.+..+ +.. .-..
T Consensus 281 ~~aF~~c~~L~~i~l~~-~i~~----I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~-I~~~ 351 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFSS-RITE----LPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTK-IPES 351 (394)
T ss_dssp TTTTTTCTTCCEEECCT-TCCE----ECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCB-CCGG
T ss_pred CcccccccccccccCCC-cccc----cCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCE-EhHh
Confidence 34566788899999864 3422 22245778899999999875 45 444448999999999999754 555 3346
Q ss_pred hhhcCCCCCEEeccCcccccccCcccccCcccceeee
Q 037597 92 SIASFTSLKYLSMQDSVLKGALHGQGKLRVSEAFVIL 128 (130)
Q Consensus 92 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~l~~l~ 128 (130)
+|.+|.+|+.+++.++... + . .+..++.|+.+.
T Consensus 352 aF~~C~~L~~i~~~~~~~~--~-~-~~~~~~~L~~i~ 384 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSRSQ--W-N-AISTDSGLQNLP 384 (394)
T ss_dssp GGTTCTTCCEEEESSCHHH--H-H-TCBCCCCC----
T ss_pred HhhCCCCCCEEEECCceee--h-h-hhhccCCCCEEE
Confidence 8899999999999887544 2 2 355555665553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.74 E-value=0.0033 Score=38.19 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=37.0
Q ss_pred CCCCCCCccCccccCCCCCCcEEEcCCcccccccCCchhhhcCCCCCCCEEeccCCCCC
Q 037597 2 SANAIDNLVVPKDYRGLRKLNTLVLGGTEVAMIDGSKALQSIGSLPSLKTLYLSYTNFT 60 (130)
Q Consensus 2 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 60 (130)
+++.++...+|..+ .+++++|+|++|.+ +...+..+..+++|+.+++.+|.+.
T Consensus 16 s~~~L~~~~vP~~l--p~~l~~L~Ls~N~l----~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 16 GRRGLTWASLPTAF--PVDTTELVLTGNNL----TALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CSSCCCTTTSCSCC--CTTCSEEECTTSCC----SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCCCccccCCCCC--CcCCCEEECCCCcC----CccChhhhhhccccCEEEecCCCee
Confidence 34555411136432 34699999999999 3433445778899999999999886
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.48 E-value=24 Score=19.83 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=30.2
Q ss_pred hhcCCCCCcEEEccCCCCCCchhHHhhhcCCCCCEEeccCc
Q 037597 67 ELHNLTNLEELILDESDLHVSQLLQSIASFTSLKYLSMQDS 107 (130)
Q Consensus 67 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 107 (130)
.|.+|.+|+.+.+..+ ++. .-..+|..|.+|+.+.+...
T Consensus 15 aF~~c~~L~~i~iP~~-v~~-Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGL-LYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSC-CCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hhe-EcHHHHhccCCccEEEEcCC
Confidence 7999999999999765 333 22357889999999988753
Done!