BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037598
         (360 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
 pdb|4DJI|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
 pdb|4DJK|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
 pdb|4DJK|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
          Length = 511

 Score = 31.2 bits (69), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 112 FVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLV-----L 166
            V+ Q ++  IA  I+   TGG + M F+  L   V      YF+L    + LV     L
Sbjct: 341 LVISQLVITSIAL-IILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDL 399

Query: 167 SQTPNFNSLKGVSLLAAVMSICYSMVALITS 197
            +T N    KGV L+ A++ +  S++A I S
Sbjct: 400 KRTFNIPGGKGVKLVVAIVGLLTSIMAFIVS 430


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.140    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,832,736
Number of Sequences: 62578
Number of extensions: 444379
Number of successful extensions: 965
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 2
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)