Query 037598
Match_columns 360
No_of_seqs 134 out of 1398
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 02:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 1.4E-46 3E-51 354.7 21.9 331 16-356 24-359 (437)
2 PTZ00206 amino acid transporte 100.0 1.5E-43 3.3E-48 342.7 20.5 301 29-337 59-369 (467)
3 KOG1304 Amino acid transporter 100.0 4.6E-43 1E-47 325.5 20.5 315 27-356 44-372 (449)
4 PF01490 Aa_trans: Transmembra 100.0 1.9E-44 4.1E-49 346.1 5.4 322 28-356 1-332 (409)
5 PLN03074 auxin influx permease 100.0 1.6E-36 3.5E-41 292.6 16.5 306 28-356 44-361 (473)
6 KOG1305 Amino acid transporter 100.0 2.5E-34 5.4E-39 270.3 21.7 300 27-338 3-313 (411)
7 COG0814 SdaC Amino acid permea 100.0 1.6E-28 3.5E-33 233.8 23.5 300 26-336 5-317 (415)
8 KOG4303 Vesicular inhibitory a 100.0 1.2E-30 2.7E-35 229.7 8.1 296 25-338 112-412 (524)
9 PRK09664 tryptophan permease T 99.9 3.6E-20 7.7E-25 174.0 22.1 297 27-338 6-318 (415)
10 PRK10483 tryptophan permease; 99.9 6.1E-20 1.3E-24 172.6 22.7 298 25-338 6-317 (414)
11 TIGR00837 araaP aromatic amino 99.9 1.9E-20 4.1E-25 178.1 18.4 288 36-338 3-303 (381)
12 PF03222 Trp_Tyr_perm: Tryptop 99.9 7.1E-20 1.5E-24 173.4 21.8 294 28-336 1-307 (394)
13 PRK15132 tyrosine transporter 99.8 2.9E-18 6.2E-23 161.9 21.7 290 31-338 4-306 (403)
14 TIGR00814 stp serine transport 99.7 9.9E-16 2.1E-20 145.0 21.1 294 34-335 7-312 (397)
15 PRK13629 threonine/serine tran 99.7 4.6E-15 9.9E-20 139.8 21.8 294 37-335 26-347 (443)
16 TIGR00912 2A0309 spore germina 99.5 4.6E-13 9.9E-18 126.4 16.5 287 28-337 1-299 (359)
17 PRK10435 cadB lysine/cadaverin 99.5 7.1E-13 1.5E-17 128.3 18.2 245 25-285 2-246 (435)
18 PRK10655 potE putrescine trans 99.5 3.6E-12 7.8E-17 123.6 22.4 241 26-283 4-246 (438)
19 TIGR00906 2A0303 cationic amin 99.5 3.9E-12 8.5E-17 126.3 21.8 297 25-332 25-342 (557)
20 TIGR00909 2A0306 amino acid tr 99.5 6.5E-12 1.4E-16 121.5 20.3 291 27-333 2-308 (429)
21 PRK11021 putative transporter; 99.4 1.4E-11 3.1E-16 118.4 21.3 229 31-280 2-231 (410)
22 TIGR01773 GABAperm gamma-amino 99.4 2E-11 4.3E-16 118.9 22.3 242 26-284 10-259 (452)
23 PRK10249 phenylalanine transpo 99.4 1.2E-11 2.6E-16 120.5 20.3 241 25-282 18-265 (458)
24 COG1113 AnsP Gamma-aminobutyra 99.4 3.5E-12 7.5E-17 118.9 14.4 236 25-276 10-253 (462)
25 TIGR00905 2A0302 transporter, 99.4 2.4E-11 5.2E-16 118.9 21.2 248 26-285 5-257 (473)
26 PRK11049 D-alanine/D-serine/gl 99.4 2.8E-11 6E-16 118.3 20.6 241 25-282 17-267 (469)
27 PRK10644 arginine:agmatin anti 99.4 1.1E-11 2.4E-16 120.4 17.1 244 25-285 5-250 (445)
28 KOG1287 Amino acid transporter 99.4 1.5E-12 3.3E-17 123.0 10.7 245 24-285 8-263 (479)
29 PF03845 Spore_permease: Spore 99.4 1.8E-11 4E-16 113.6 17.7 287 29-339 1-297 (320)
30 PRK11387 S-methylmethionine tr 99.4 6.6E-11 1.4E-15 115.8 20.9 245 26-286 12-266 (471)
31 TIGR00911 2A0308 L-type amino 99.4 1.4E-11 3.1E-16 121.4 15.5 250 24-285 38-294 (501)
32 TIGR00930 2a30 K-Cl cotranspor 99.3 2.6E-11 5.6E-16 126.2 17.3 248 24-280 72-334 (953)
33 PRK11357 frlA putative fructos 99.3 1.1E-10 2.3E-15 113.5 19.6 241 25-281 5-250 (445)
34 PRK10836 lysine transporter; P 99.3 2.4E-10 5.2E-15 112.3 22.0 245 25-285 12-264 (489)
35 PRK15049 L-asparagine permease 99.3 3.9E-10 8.4E-15 110.9 23.2 289 26-330 26-330 (499)
36 TIGR03810 arg_ornith_anti argi 99.3 2.2E-10 4.7E-15 112.0 21.0 290 28-330 1-305 (468)
37 PRK10746 putative transport pr 99.3 2.5E-10 5.4E-15 111.3 20.0 291 25-333 7-313 (461)
38 PRK10238 aromatic amino acid t 99.3 3.4E-10 7.3E-15 110.3 20.8 237 25-278 9-252 (456)
39 PRK10580 proY putative proline 99.3 6.1E-10 1.3E-14 108.6 22.4 240 25-281 6-254 (457)
40 TIGR00908 2A0305 ethanolamine 99.2 8.9E-10 1.9E-14 107.0 20.6 238 26-279 5-244 (442)
41 TIGR00913 2A0310 amino acid pe 99.2 1.4E-09 3E-14 106.7 20.3 239 27-280 1-251 (478)
42 PF13520 AA_permease_2: Amino 99.2 8.2E-10 1.8E-14 106.7 15.2 290 30-336 1-305 (426)
43 PRK10197 gamma-aminobutyrate t 99.1 4.3E-09 9.4E-14 102.2 19.2 277 39-333 3-295 (446)
44 COG0531 PotE Amino acid transp 99.1 9.1E-09 2E-13 100.5 20.2 282 25-319 9-302 (466)
45 COG0833 LysP Amino acid transp 99.1 4.9E-09 1.1E-13 100.1 15.6 297 25-336 41-358 (541)
46 KOG1286 Amino acid transporter 99.0 3.1E-09 6.7E-14 104.3 11.5 302 25-335 27-352 (554)
47 KOG3832 Predicted amino acid t 99.0 6.1E-09 1.3E-13 86.7 10.7 210 31-247 13-299 (319)
48 TIGR03428 ureacarb_perm permea 99.0 1E-07 2.3E-12 93.4 21.2 250 25-283 10-270 (475)
49 TIGR00907 2A0304 amino acid pe 98.9 2.6E-07 5.6E-12 90.8 22.3 245 25-279 9-270 (482)
50 PRK15238 inner membrane transp 98.8 2.4E-07 5.1E-12 91.4 17.3 238 26-280 5-265 (496)
51 PF00324 AA_permease: Amino ac 98.8 3.8E-08 8.3E-13 96.6 11.5 234 39-287 6-261 (478)
52 TIGR00910 2A0307_GadC glutamat 98.6 4.1E-06 8.9E-11 82.7 19.8 236 27-279 3-247 (507)
53 TIGR03813 put_Glu_GABA_T putat 98.5 1.1E-05 2.5E-10 79.0 19.7 242 29-286 2-254 (474)
54 TIGR00800 ncs1 NCS1 nucleoside 98.2 0.00049 1.1E-08 66.9 23.4 297 28-336 12-329 (442)
55 COG3949 Uncharacterized membra 98.1 0.00031 6.7E-09 63.6 17.3 219 34-278 7-230 (349)
56 KOG1289 Amino acid transporter 98.0 0.00015 3.2E-09 69.9 14.5 252 27-287 47-313 (550)
57 PRK11375 allantoin permease; P 97.8 0.019 4.1E-07 56.4 25.6 234 94-337 89-344 (484)
58 COG0591 PutP Na+/proline sympo 97.7 0.0082 1.8E-07 59.2 21.3 154 26-190 36-193 (493)
59 COG1457 CodB Purine-cytosine p 97.6 0.0072 1.6E-07 57.8 18.9 218 96-336 83-303 (442)
60 TIGR02119 panF sodium/pantothe 97.6 0.013 2.8E-07 57.5 21.1 155 25-192 37-197 (471)
61 PRK09442 panF sodium/panthothe 97.5 0.02 4.4E-07 56.3 21.2 156 25-191 38-197 (483)
62 TIGR00813 sss transporter, SSS 97.5 0.014 3E-07 56.2 18.6 151 27-189 2-153 (407)
63 TIGR02358 thia_cytX probable h 97.3 0.097 2.1E-06 50.0 21.9 219 94-335 58-277 (386)
64 PRK12488 acetate permease; Pro 97.3 0.022 4.8E-07 57.0 18.0 153 26-191 65-219 (549)
65 PRK09395 actP acetate permease 97.0 0.051 1.1E-06 54.5 17.7 152 26-189 67-219 (551)
66 PF02554 CstA: Carbon starvati 97.0 0.0095 2.1E-07 55.2 11.2 119 13-135 35-154 (376)
67 TIGR02711 symport_actP cation/ 96.9 0.065 1.4E-06 53.7 17.8 151 26-189 65-217 (549)
68 TIGR00796 livcs branched-chain 96.9 0.029 6.3E-07 53.1 13.9 268 37-335 2-301 (378)
69 TIGR00835 agcS amino acid carr 96.7 0.017 3.7E-07 55.3 11.0 146 28-186 45-199 (425)
70 COG1953 FUI1 Cytosine/uracil/t 96.6 0.73 1.6E-05 44.7 23.2 236 93-339 102-360 (497)
71 TIGR02121 Na_Pro_sym sodium/pr 96.6 0.13 2.8E-06 50.7 16.8 154 26-189 34-193 (487)
72 PRK10484 putative transporter; 96.6 0.47 1E-05 47.2 20.6 157 26-189 36-198 (523)
73 PF00474 SSF: Sodium:solute sy 96.5 0.037 7.9E-07 53.2 11.9 153 27-191 5-159 (406)
74 PRK15419 proline:sodium sympor 96.5 0.34 7.4E-06 48.0 18.9 151 26-189 38-197 (502)
75 TIGR03648 Na_symport_lg probab 96.3 0.25 5.5E-06 49.5 17.4 151 26-188 30-181 (552)
76 PF02133 Transp_cyt_pur: Perme 96.3 0.017 3.7E-07 56.1 8.6 242 26-283 5-258 (440)
77 PRK11017 codB cytosine permeas 96.2 0.79 1.7E-05 44.0 19.4 172 94-287 71-244 (404)
78 KOG2083 Na+/K+ symporter [Inor 96.1 0.031 6.6E-07 54.6 8.8 230 29-278 29-275 (643)
79 PRK15015 carbon starvation pro 95.5 0.11 2.3E-06 51.8 10.0 106 12-121 65-171 (701)
80 COG1966 CstA Carbon starvation 95.3 0.13 2.9E-06 50.0 9.8 109 10-122 32-141 (575)
81 COG0733 Na+-dependent transpor 95.0 1.2 2.6E-05 42.6 15.0 211 30-247 9-241 (439)
82 PF05525 Branch_AA_trans: Bran 94.3 0.17 3.6E-06 48.6 7.7 131 40-181 206-339 (427)
83 KOG1288 Amino acid transporter 94.3 0.6 1.3E-05 46.8 11.4 35 246-281 315-349 (945)
84 KOG2466 Uridine permease/thiam 93.8 6.5 0.00014 38.1 16.8 296 26-337 52-378 (572)
85 TIGR00796 livcs branched-chain 93.1 0.28 6.1E-06 46.5 6.8 77 95-180 256-332 (378)
86 PF01566 Nramp: Natural resist 92.8 2.4 5.2E-05 39.9 12.8 81 95-184 43-125 (358)
87 PF05525 Branch_AA_trans: Bran 92.5 11 0.00023 36.5 19.7 283 31-335 4-307 (427)
88 COG4147 DhlC Predicted symport 92.0 7.8 0.00017 37.5 14.7 176 94-283 104-293 (529)
89 PF00209 SNF: Sodium:neurotran 91.0 6.4 0.00014 39.2 14.0 108 165-279 192-302 (523)
90 COG1114 BrnQ Branched-chain am 90.4 1.1 2.4E-05 42.4 7.5 134 40-184 208-344 (431)
91 KOG2082 K+/Cl- cotransporter K 88.3 1.8 3.9E-05 43.9 7.5 111 28-142 113-227 (1075)
92 PF02028 BCCT: BCCT family tra 86.5 14 0.0003 36.4 12.5 157 27-191 72-258 (485)
93 PRK15433 branched-chain amino 84.0 43 0.00093 32.5 17.7 274 31-335 9-311 (439)
94 PF01235 Na_Ala_symp: Sodium:a 82.3 21 0.00047 34.3 11.5 46 27-73 16-62 (416)
95 PRK15433 branched-chain amino 80.5 3.6 7.7E-05 39.8 5.6 74 97-180 268-341 (439)
96 KOG2349 Na+:iodide/myo-inosito 80.1 47 0.001 33.4 13.2 241 26-286 43-302 (585)
97 COG1914 MntH Mn2+ and Fe2+ tra 79.6 32 0.0007 33.1 11.7 136 30-179 17-153 (416)
98 KOG1289 Amino acid transporter 78.2 24 0.00053 34.9 10.4 45 95-140 326-370 (550)
99 PRK09950 putative transporter; 77.6 19 0.00042 35.6 9.7 161 28-189 82-266 (506)
100 PRK03356 L-carnitine/gamma-but 72.7 38 0.00083 33.5 10.4 162 28-190 84-270 (504)
101 PRK09928 choline transport pro 71.8 31 0.00068 35.3 9.8 163 27-190 90-274 (679)
102 TIGR00842 bcct choline/carniti 70.7 37 0.00081 33.1 9.7 160 28-188 35-218 (453)
103 PHA02764 hypothetical protein; 69.9 14 0.0003 34.0 6.1 81 27-111 11-94 (399)
104 PRK00701 manganese transport p 68.2 90 0.0019 30.4 11.9 35 95-130 95-129 (439)
105 COG1292 BetT Choline-glycine b 63.1 44 0.00096 33.1 8.5 153 30-186 88-266 (537)
106 PLN02680 carbon-monoxide oxyge 59.3 1.3E+02 0.0027 26.6 9.9 67 258-326 77-143 (232)
107 PF04835 Pox_A9: A9 protein co 53.9 23 0.0005 23.0 3.3 33 258-290 20-52 (54)
108 COG1115 AlsT Na+/alanine sympo 52.1 2.2E+02 0.0047 27.8 10.9 35 26-60 59-94 (452)
109 PF05915 DUF872: Eukaryotic pr 44.9 1.1E+02 0.0024 23.6 6.5 24 31-54 40-63 (115)
110 TIGR01197 nramp NRAMP (natural 43.7 3E+02 0.0065 26.3 11.9 28 95-123 65-92 (390)
111 PRK13183 psbN photosystem II r 37.6 41 0.00088 21.2 2.5 28 261-288 6-33 (46)
112 CHL00020 psbN photosystem II p 36.0 38 0.00082 21.1 2.1 27 262-288 4-30 (43)
113 PHA02680 ORF090 IMV phosphoryl 35.3 71 0.0015 23.2 3.7 59 226-290 16-74 (91)
114 KOG3660 Sodium-neurotransmitte 35.0 47 0.001 33.9 3.9 84 163-247 226-312 (629)
115 PF02468 PsbN: Photosystem II 34.4 50 0.0011 20.6 2.5 27 262-288 4-30 (43)
116 KOG1619 Cytochrome b [Energy p 33.7 2.9E+02 0.0064 24.4 8.0 72 254-327 82-153 (245)
117 cd08765 Cyt_b561_CYBRD1 Verteb 25.1 2.1E+02 0.0045 23.4 5.4 67 258-326 45-111 (153)
118 PF11460 DUF3007: Protein of u 23.1 1.1E+02 0.0024 23.1 3.2 11 44-54 9-19 (104)
119 cd08766 Cyt_b561_ACYB-1_like P 22.3 1.8E+02 0.0038 23.5 4.5 64 261-326 41-104 (144)
120 PHA02898 virion envelope prote 21.7 1.4E+02 0.0031 21.7 3.3 62 225-293 15-76 (92)
121 cd08763 Cyt_b561_CYB561 Verteb 21.4 2.7E+02 0.0059 22.4 5.4 65 260-326 40-104 (143)
122 cd08762 Cyt_b561_CYBASC3 Verte 21.0 5.1E+02 0.011 21.8 9.0 66 259-326 69-134 (179)
123 PHA03048 IMV membrane protein; 20.8 1.8E+02 0.0038 21.3 3.7 59 225-291 15-73 (93)
124 PF02028 BCCT: BCCT family tra 20.4 1.5E+02 0.0032 29.4 4.4 61 124-184 401-465 (485)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=354.68 Aligned_cols=331 Identities=41% Similarity=0.755 Sum_probs=286.1
Q ss_pred CCCCCCCcccccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhccc---ccCCcc
Q 037598 16 KDLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHE---VVPGKR 92 (360)
Q Consensus 16 ~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~---~~~~~~ 92 (360)
.+.+++++..++|+.|++++.++.++.++|.|+|++||++++.||..|+++++..++++.||+.+|.+|.+ ..+++|
T Consensus 24 ~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r 103 (437)
T KOG1303|consen 24 SDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKR 103 (437)
T ss_pred cccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 45556677777899999999999999999999999999999999999999999999999999999999844 345666
Q ss_pred cCChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCC
Q 037598 93 FDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNF 172 (360)
Q Consensus 93 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l 172 (360)
..+|.|+++++||++. ++++..++.+.++++++.|++..+|.+..+.+..+.++...+.+.++++++++++|++++||+
T Consensus 104 ~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~ 182 (437)
T KOG1303|consen 104 RYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNF 182 (437)
T ss_pred CCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCc
Confidence 7889999999999865 889999999999999999999999999999999886542345789999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCC
Q 037598 173 NSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPE 252 (360)
Q Consensus 173 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~ 252 (360)
+.+++.|..+.+.++.+..+.+..+...+......+.+.... .+... .++++|++.|+|.||.++|++|++| |
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~-~~~~~--~f~a~g~iaFaf~gH~v~peIq~tM----k 255 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL-GTIPT--VFTALGIIAFAYGGHAVLPEIQHTM----K 255 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC-CCCcc--hhhhhhheeeeecCCeeeeehHhhc----C
Confidence 999999999999998888888777777664321111111111 11111 1899999999999999999999999 8
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Q 037598 253 VPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIES 332 (360)
Q Consensus 253 ~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 332 (360)
+|.+ |+|++.+++.+++.+|+..++.||++|||+++++++.|+.++.|....+++++.+|++.++.+...|+.+.+|+
T Consensus 256 ~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~ 333 (437)
T KOG1303|consen 256 SPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEK 333 (437)
T ss_pred Cchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHH
Confidence 8877 66999999999999999999999999999999999999976789999999999999999999999999999999
Q ss_pred HHhhccC-C-CCcchhheeeeEeEEE
Q 037598 333 YLVQHMR-F-TPGLLLRLVARSSYVG 356 (360)
Q Consensus 333 ~~~~~~~-~-~~~~~~~~~~r~~~~~ 356 (360)
....+++ . ++..++|.+.|+.+++
T Consensus 334 ~~~~~~~~~~~~~~~~R~~~Rt~~v~ 359 (437)
T KOG1303|consen 334 LIGVKHPDFKKRSLVLRLLVRTFFVA 359 (437)
T ss_pred HhccCCccccccccceeeehhhHHHH
Confidence 9987765 2 2456799999998764
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.5e-43 Score=342.73 Aligned_cols=301 Identities=20% Similarity=0.268 Sum_probs=247.9
Q ss_pred CchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCcc
Q 037598 29 KAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRF 108 (360)
Q Consensus 29 ~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~ 108 (360)
+.+..++.+|++|+++|+|+|++|++|+++||+.|++++++++.++.|+.+++.+++++ ++. .+|+|++++++|| +
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~--~sY~~la~~~~G~-~ 134 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TNI--RTYEGVARVLLGP-W 134 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCC--CCHHHHHHHHhCH-H
Confidence 35678999999999999999999999999999999999999999999999999999763 333 4999999999996 6
Q ss_pred ceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCC---c-ccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 037598 109 GYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNV---E-NVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAV 184 (360)
Q Consensus 109 g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~---~-~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~ 184 (360)
|++++++.+.+.++|+|++|+++.+|.+..+++...... . ..++..+.+++.++++|++++|++++++++|.++++
T Consensus 135 g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~ 214 (467)
T PTZ00206 135 GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVS 214 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHH
Confidence 788999999999999999999999999999886421100 0 012334455677788999999999999999999998
Q ss_pred HHHHHHHHHHhHhhhcCCCCC--CccccccCCc--cch-hHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCc
Q 037598 185 MSICYSMVALITSIKKGIHHR--PESYGVRSHT--EVG-KAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPM 259 (360)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~--~~~-~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~ 259 (360)
+.+...+.+++++..++.+++ +.+.+.++.. ... ...+++.++|+++|||.||.+++++++|| |||+.+|+
T Consensus 215 ~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~~ 290 (467)
T PTZ00206 215 FMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGKF 290 (467)
T ss_pred HHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhHH
Confidence 766555555555554444331 1111111100 011 12367899999999999999999999999 99988899
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcc-cCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhc
Q 037598 260 WKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISL-RKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQH 337 (360)
Q Consensus 260 ~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 337 (360)
.+++..++.++.++|.++|++||+.||++++++++.|+ |.+++...++++.+++.++.+||++.+|+|+.+++.+.++
T Consensus 291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~ 369 (467)
T PTZ00206 291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD 369 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC
Confidence 89999999999999999999999999999999999999 5567888899999999999999999999999999997544
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-43 Score=325.46 Aligned_cols=315 Identities=21% Similarity=0.253 Sum_probs=268.9
Q ss_pred cCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhccccc---CCcccCChHHHHHHh
Q 037598 27 SRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVV---PGKRFDRYPELGEHC 103 (360)
Q Consensus 27 ~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~---~~~~~~sy~~l~~~~ 103 (360)
++..|..++..|+.+.++|+|+|++|++|+++||+.|.+..++.+.++.||++.+++|.... .+....+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999994321 222246777776544
Q ss_pred ----------cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCC
Q 037598 104 ----------FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFN 173 (360)
Q Consensus 104 ----------~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~ 173 (360)
+|| +++.++++++.+.++|.|++|+++.++.+.++.+... ....+.+.++.+..+..+++++.|++|
T Consensus 124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~--~~~~s~~~~i~~~~~~~lll~~Ir~Lk 200 (449)
T KOG1304|consen 124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS--PGVLSVRLYILIQLPPLLLLNLIRNLK 200 (449)
T ss_pred HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC--CCCccHHHHHHHHHHHHHHHHHHHhhH
Confidence 454 6677999999999999999999999999999998432 235688899999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCC
Q 037598 174 SLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEV 253 (360)
Q Consensus 174 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~ 253 (360)
.|..+|.+++++.+..+.++.++.+.... + .. +...-.++.++...+|+.+|||.|+..+.|+.++| |+
T Consensus 201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~-~-~~-----~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~ 269 (449)
T KOG1304|consen 201 ILSPFSLFANVFILVGLAIIMYYLVQDLP-P-TS-----DLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KK 269 (449)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccC-C-cc-----ccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cC
Confidence 99999999999988888777776555332 1 11 12223458899999999999999999999999999 99
Q ss_pred CCCCCcc-hhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Q 037598 254 PSKKPMW-KGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIES 332 (360)
Q Consensus 254 p~~~~~~-~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 332 (360)
|+++.-+ +++..++.+++++|..+|++||+.||+++++.++.|+|+ +|+.+.+++++++.++.+||+|++|..+.+|+
T Consensus 270 P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~ 348 (449)
T KOG1304|consen 270 PQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP 348 (449)
T ss_pred hhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence 9875422 788899999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhhccCCCCcchhheeeeEeEEE
Q 037598 333 YLVQHMRFTPGLLLRLVARSSYVG 356 (360)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~r~~~~~ 356 (360)
.+.++.+.++.++....+|+.+|+
T Consensus 349 ~i~~k~~~~~~~~~~~~~R~~lVl 372 (449)
T KOG1304|consen 349 GIRKKFSENRKKLLEYALRVFLVL 372 (449)
T ss_pred hHHHhcCcchhHHHHHHHHHHHHH
Confidence 988776655566777777766543
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.9e-44 Score=346.08 Aligned_cols=322 Identities=28% Similarity=0.476 Sum_probs=271.9
Q ss_pred CCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccC-CcccCChHHHHHHhcCC
Q 037598 28 RKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVP-GKRFDRYPELGEHCFGP 106 (360)
Q Consensus 28 ~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~-~~~~~sy~~l~~~~~G~ 106 (360)
+|.|+++++++++|+++|+|+|++|++|+++||+.|++++++++.++.+|.+++.++++..+ +++..+|+|++++++||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999976443 34456999999999997
Q ss_pred ccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 037598 107 RFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMS 186 (360)
Q Consensus 107 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~ 186 (360)
+ +++++++++.+.++|.+++|++..+|.+.++.+...++ ...++..+.++..++++|++++|+++++++.|.+++++.
T Consensus 81 ~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~ 158 (409)
T PF01490_consen 81 K-GKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI 158 (409)
T ss_pred c-ccccccchheeccccccceeEEEeeeeeeccccccccc-ccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence 5 57799999999999999999999999999998876532 235677788888999999999999999999999999976
Q ss_pred HHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCC-CCcchhhhH
Q 037598 187 ICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSK-KPMWKGVVV 265 (360)
Q Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~-~~~~~~~~~ 265 (360)
+..+++..+........+ +.+...++..+..++.+++.++|+++|+|.+|.++|++++|| |+|++ +|++++...
T Consensus 159 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~~~~ 233 (409)
T PF01490_consen 159 FYFIVIVVIYIISYGPGE-PSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKVLSI 233 (409)
T ss_pred ceeeeeecceeeeeeccc-ccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccceeeee
Confidence 653222222222221111 122221112345677899999999999999999999999999 89988 678899999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhc--------
Q 037598 266 AYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQH-------- 337 (360)
Q Consensus 266 ~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~-------- 337 (360)
++.+++++|+.+|+.||++||+++++|++.|++++++...++++++.++++.+||++.+|.++.+++.+.++
T Consensus 234 s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~ 313 (409)
T PF01490_consen 234 SMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSP 313 (409)
T ss_pred hhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccccccc
Confidence 999999999999999999999999999999999888889999999999999999999999999999999763
Q ss_pred cCCCCcchhheeeeEeEEE
Q 037598 338 MRFTPGLLLRLVARSSYVG 356 (360)
Q Consensus 338 ~~~~~~~~~~~~~r~~~~~ 356 (360)
.+....+++|..+|+.+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~ 332 (409)
T PF01490_consen 314 KNTPSSRWLRYLIRIILVL 332 (409)
T ss_pred ccccccceeeeeeecchhh
Confidence 1223456889999987654
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.6e-36 Score=292.58 Aligned_cols=306 Identities=18% Similarity=0.253 Sum_probs=243.8
Q ss_pred CCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccc----cC--Cc--c--cCChH
Q 037598 28 RKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEV----VP--GK--R--FDRYP 97 (360)
Q Consensus 28 ~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~----~~--~~--~--~~sy~ 97 (360)
.+.|..++.+++++..+|.|+|+||++|+++||+.|++.+++.++++.||++++.++..+ ++ +. + ..+|.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 358999999999999999999999999999999999999999999999999999986221 11 11 1 12679
Q ss_pred HHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhH
Q 037598 98 ELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKG 177 (360)
Q Consensus 98 ~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~ 177 (360)
|+++..+||++++ +..+...+.+++.|+.|++..++.+..+. +..+.+.|++++.++.+|++++|+++++++
T Consensus 124 e~~~~~~G~~~~~-~~~~~~~v~l~~~~v~~li~~~~~~~~l~-------~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~ 195 (473)
T PLN03074 124 EVLDGLLGPYWKN-VGLAFNCTFLLFGSVIQLIACASNIYYIN-------DNLDKRTWTYIFGACCATTVFIPSFHNYRI 195 (473)
T ss_pred HHHHHhcChhHHH-HHHHHHhhhhHHHHHHHHHHHhhhhhhhC-------CCcCCCeEEeehHHHHHHHHHccCHHHHHH
Confidence 9999999986654 66677788888888889887666554441 235667888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCC
Q 037598 178 VSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKK 257 (360)
Q Consensus 178 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~ 257 (360)
+|.+++..++...+.+.......+.++ +.++ ..+.++..++.++++++|+|.||..+|++++|| |||+++
T Consensus 196 ~S~ig~~~tl~~av~i~i~~i~~~~~~-~~~~-----~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~F 265 (473)
T PLN03074 196 WSFLGLLMTTYTAWYMTIAALSHGQVE-GVKH-----SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQKF 265 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCC-----CCchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhcc
Confidence 999998865544333333334343332 2221 124466778889999999999999999999999 999987
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhccCCCch--hhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHh
Q 037598 258 PMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVE--DDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLV 335 (360)
Q Consensus 258 ~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~--~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 335 (360)
+ +....+...+..+|+.+|+.||+.|||++. ++.+.|+|++.+ ..+++++++++++.+||+++.|+.+.+|+.+.
T Consensus 266 ~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~ 342 (473)
T PLN03074 266 K--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIG 342 (473)
T ss_pred c--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 7 888899999999999999999999999876 456777876544 57899999999999999999999999999876
Q ss_pred hccCCCCcchhheeeeEeEEE
Q 037598 336 QHMRFTPGLLLRLVARSSYVG 356 (360)
Q Consensus 336 ~~~~~~~~~~~~~~~r~~~~~ 356 (360)
.+ .++....|.++|+.+++
T Consensus 343 ~~--~~k~~~~r~~~R~~lv~ 361 (473)
T PLN03074 343 VH--DTKSICLRALARLPVVV 361 (473)
T ss_pred cc--ccccHHHHHHHHHHHHH
Confidence 43 23346788888887653
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-34 Score=270.26 Aligned_cols=300 Identities=22% Similarity=0.333 Sum_probs=247.9
Q ss_pred cCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCC
Q 037598 27 SRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGP 106 (360)
Q Consensus 27 ~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~ 106 (360)
+++.|.+.+++++.|+++|+|++++|++|++.|.+.|++++..++.++.++.+++.++.++ .+.+ +|++++++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~-~~~~--ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK-SGER--TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh-cCCC--CHHHHHHHHcCC
Confidence 4567999999999999999999999999999999999999999999999999999999774 3333 999999999995
Q ss_pred ccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcc----cchhH-HHHHHHHHHHHhhcCCCCCchhHHHHH
Q 037598 107 RFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVEN----VRLTY-FILIFACLHLVLSQTPNFNSLKGVSLL 181 (360)
Q Consensus 107 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~----~~~~~-~~~i~~~i~lpl~~~~~l~~l~~~s~~ 181 (360)
.|+....+.......| +++|++..+|.+..+......+++. .++.. +.+....+++|+++.|++..+++.|.+
T Consensus 80 -~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~ 157 (411)
T KOG1305|consen 80 -LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSAL 157 (411)
T ss_pred -CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 7776666555555555 6999999999999766554322221 12333 577788889999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcch
Q 037598 182 AAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWK 261 (360)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~ 261 (360)
+....+...++..+..+......+...+. ......+.+.+.++++++|+|.||.|..++++|| |||+++++.+
T Consensus 158 s~~~~~~fv~~vv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~~ 230 (411)
T KOG1305|consen 158 SLASVVYFVVLVVYKYFQGPCALGRLSYL---VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQR 230 (411)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCcccc---cCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHHHH
Confidence 99987776666666655533211011111 1123333789999999999999999999999999 9999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHH------HHHHHHHHHHHHHhhhhcccccHHHHHHHHHh
Q 037598 262 GVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWL------IAIANFMVFFHVVGSYQVFAMPVFDMIESYLV 335 (360)
Q Consensus 262 ~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~------~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 335 (360)
+...+...+.++|..+|.+||+.|||++.+|++.++++.+-. ...++..+.++.+.++|+..+|+|..+++.+.
T Consensus 231 v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~ 310 (411)
T KOG1305|consen 231 VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLF 310 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 999999999999999999999999999999999999865443 47899999999999999999999999988877
Q ss_pred hcc
Q 037598 336 QHM 338 (360)
Q Consensus 336 ~~~ 338 (360)
+..
T Consensus 311 ~~~ 313 (411)
T KOG1305|consen 311 PYQ 313 (411)
T ss_pred ccC
Confidence 654
No 7
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=233.76 Aligned_cols=300 Identities=20% Similarity=0.208 Sum_probs=240.7
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcC
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFG 105 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G 105 (360)
.+.+.+..+.++++.++++|+|+|++|++++..|+..+++.+++++..++++.+++.|+.++.++.+ .++.+++++.+|
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~G 83 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGK-ASITSLVEDYLG 83 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHhC
Confidence 4567888999999999999999999999999999999999999999999999999999977555432 499999999999
Q ss_pred CccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 037598 106 PRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVM 185 (360)
Q Consensus 106 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~ 185 (360)
|++ ++++++.+.+.+++.+.+|.+..+|.+++.++...+..+ .++....+++.+++.++++.++...++..+.+....
T Consensus 84 ~~~-~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~-~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 84 KKG-GILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP-LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred cch-HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC-cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 865 668999999999999999999999999999998554322 567778888888888999999999999999999886
Q ss_pred HHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhH
Q 037598 186 SICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVV 265 (360)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~ 265 (360)
.....+...+.... ..+ ......+...+..+..+..++|+++|||++|.++|++++|| +++++++.+|+...
T Consensus 162 v~~~~~l~~~~~~~-~~~---~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k~~~~ 233 (415)
T COG0814 162 VIYLVLLVVYLIPH-WNP---ANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAILI 233 (415)
T ss_pred HHHHHHHHHHHhcc-cCH---HHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHHHHHHHH
Confidence 55444333333221 111 11100001114678899999999999999999999999999 76666567899999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCch-------------HHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Q 037598 266 AYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPA-------------WLIAIANFMVFFHVVGSYQVFAMPVFDMIES 332 (360)
Q Consensus 266 ~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~-------------~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 332 (360)
+..+..++|+.++..+|..+|+.+.++++.+.++++ ......+++..+++..+|--.-...+|..++
T Consensus 234 ~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~ 313 (415)
T COG0814 234 GSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLAD 313 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhH
Confidence 999999999999999999999999999999986443 2445555666666666655555566677777
Q ss_pred HHhh
Q 037598 333 YLVQ 336 (360)
Q Consensus 333 ~~~~ 336 (360)
.+.+
T Consensus 314 ~~~~ 317 (415)
T COG0814 314 LFKK 317 (415)
T ss_pred HHHh
Confidence 7765
No 8
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-30 Score=229.68 Aligned_cols=296 Identities=18% Similarity=0.284 Sum_probs=252.2
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccC--C---cccCChHHH
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVP--G---KRFDRYPEL 99 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~--~---~~~~sy~~l 99 (360)
+.+.|.+.+|+..|..|++-|.=+++||++....||- ++..++..+.+|+||+.+|++|..... | +.+.+|.++
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHH
Confidence 4567899999999999999999999999999999995 899999999999999999999954221 1 124699999
Q ss_pred HHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHH
Q 037598 100 GEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVS 179 (360)
Q Consensus 100 ~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s 179 (360)
+..+++|+.|-..+.+.+++..+.+|+.|++..+|.+..-+|.. +.+..-|+++..+..+|.+++|++|.++.+|
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lS 265 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----SVDKASWMMITSASLLPCSFLKDLKIVSRLS 265 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----CccccchhhhhhHHHhhhHHHHHHHHHHHHH
Confidence 99999999884457788999999999999999999999887763 4667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCc
Q 037598 180 LLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPM 259 (360)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~ 259 (360)
.+..+.-+..=++++.++..... +|+........+..++...+|+++|+|..|.-+|++...| +||++++
T Consensus 266 f~ct~sH~viN~i~v~YCLs~~~-----dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn- 335 (524)
T KOG4303|consen 266 FFCTISHLVINLIMVLYCLSFVS-----DWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN- 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----hccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc----CChhHhe-
Confidence 99888755544555566655321 2322223334456678899999999999999999999999 9999988
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcc
Q 037598 260 WKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHM 338 (360)
Q Consensus 260 ~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~ 338 (360)
..+-++-+...++-..+|..||++|++.++..+.+|+|+. -...++++++++..+.|||+-++...+.+|+-+....
T Consensus 336 -~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q-sfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~ 412 (524)
T KOG4303|consen 336 -VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ-SFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGY 412 (524)
T ss_pred -eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc-chhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCC
Confidence 7888999999999999999999999999999999999864 4556889999999999999999999999999887554
No 9
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.86 E-value=3.6e-20 Score=173.98 Aligned_cols=297 Identities=12% Similarity=0.061 Sum_probs=212.2
Q ss_pred cCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCC
Q 037598 27 SRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGP 106 (360)
Q Consensus 27 ~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~ 106 (360)
++|.+.+.+++.+.++++|+|+|++|.+.+++|+..+++++++++....||+.++.|++...++ ..++.+++|+.+||
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~--g~~l~tma~~~LG~ 83 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV--GSSFNTITKDLIGN 83 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHcCh
Confidence 3445788899999999999999999999999999999999999999999999999999664443 34999999999996
Q ss_pred ccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 037598 107 RFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMS 186 (360)
Q Consensus 107 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~ 186 (360)
.|+++.++...+..++.+++|+...++.+++.++...+ .+.+.....+++.++.-++.+. +.+...+++.+-....
T Consensus 84 -~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~--~~i~~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~ 159 (415)
T PRK09664 84 -TWNIISGITVAFVLYILTYAYISANGAIISETISMNLG--YHANPRIVGICTAIFVASVLWI-SSLAASRITSLFLGLK 159 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc--CCCcHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999876322 1233444445566665555555 3466666666555443
Q ss_pred HHHHHHHHhHhhhcCCCCCCccccccCCcc---chhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhh
Q 037598 187 ICYSMVALITSIKKGIHHRPESYGVRSHTE---VGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGV 263 (360)
Q Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~ 263 (360)
+..+++.+....-+- +.+.-.+.... ...+.....++|++++||+.|.++|++.+.+. +|+++ .+|++
T Consensus 160 ii~f~~~~~~l~~~i----~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~--~~kaI 230 (415)
T PRK09664 160 IISFVIVFGSFFFQV----DYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDK--LIKSV 230 (415)
T ss_pred HHHHHHHHHHHhhcc----cHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHH--HHHHH
Confidence 333332222211111 11111000000 11134577899999999999999999999982 34444 45999
Q ss_pred hHHHHHHHHHHHHHHh--hh---------hhccCCCchhhHhh--cccCchHHHHHHHHHHHHHHHhhhhcccccHHHHH
Q 037598 264 VVAYVIVAFCYLSVGI--SG---------YWAFGQYVEDDVLI--SLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMI 330 (360)
Q Consensus 264 ~~~~~i~~~~Y~~~g~--~g---------y~~fG~~~~~~il~--~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 330 (360)
..+..+..++|++.=. .| ...-|++.+..+.. .-....+...+..++..+++.+||--....++|.+
T Consensus 231 l~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l 310 (415)
T PRK09664 231 VFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYL 310 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999976422 22 11223333331111 11344678888999999999999999999999999
Q ss_pred HHHHhhcc
Q 037598 331 ESYLVQHM 338 (360)
Q Consensus 331 ~~~~~~~~ 338 (360)
.+.++.+.
T Consensus 311 ~D~~~~~~ 318 (415)
T PRK09664 311 ADLFKIDN 318 (415)
T ss_pred HHHhCCCC
Confidence 99997654
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.86 E-value=6.1e-20 Score=172.60 Aligned_cols=298 Identities=13% Similarity=0.053 Sum_probs=218.1
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
.++++.+.+.+++.+.++.+|+|+|++|.+.++.|+..+++++++++....||+.++.|++...++ ..++.+++|+.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~--g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI--GSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHc
Confidence 356789999999999999999999999999999999999999999999999999999999664443 359999999999
Q ss_pred CCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 037598 105 GPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAV 184 (360)
Q Consensus 105 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~ 184 (360)
|| .|+++.++...+..++.+.+|+...++.+++.++. .+ .+.+...-.+++.++.-.+.+. +.+...+++.+-..
T Consensus 84 G~-~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~--~~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~ 158 (414)
T PRK10483 84 GK-GWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MS--LNVPARAAGFGFALLVAFVVWL-STKAVSRMTAIVLG 158 (414)
T ss_pred Ch-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cC--CCCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 96 56788889999999999999999999999999876 22 1234445555666555555554 45666666665555
Q ss_pred HHHHHHHHHHhHhhhcCCCCCCcccccc-CCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhh
Q 037598 185 MSICYSMVALITSIKKGIHHRPESYGVR-SHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGV 263 (360)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~ 263 (360)
..+..+++.+....-+. +.+.-.+ .......+.....+++++++||..|.++|++.+++. +|++ |.+|++
T Consensus 159 ~~i~~f~~~~~~l~~~i----~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir~~I 229 (414)
T PRK10483 159 AKVITFFLTFGSLLGHV----QPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIVKCL 229 (414)
T ss_pred HHHHHHHHHHHHHHhhc----CHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHHHHH
Confidence 44433333322222111 1111000 011123355688999999999999999999999983 3343 566999
Q ss_pred hHHHHHHHHHHHHHHhhhhhccC-----------CCchh--hHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHH
Q 037598 264 VVAYVIVAFCYLSVGISGYWAFG-----------QYVED--DVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMI 330 (360)
Q Consensus 264 ~~~~~i~~~~Y~~~g~~gy~~fG-----------~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 330 (360)
..+..+..++|++.=......-+ ++.+. ..+.+..++.+...+..++..+++.+||--....++|.+
T Consensus 230 ~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l 309 (414)
T PRK10483 230 VYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYL 309 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999985443333322 22211 112222234566678889999999999999999999999
Q ss_pred HHHHhhcc
Q 037598 331 ESYLVQHM 338 (360)
Q Consensus 331 ~~~~~~~~ 338 (360)
.+.++.+.
T Consensus 310 ~D~~k~~~ 317 (414)
T PRK10483 310 ADLFGFDD 317 (414)
T ss_pred HHHhCCCC
Confidence 99998654
No 11
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.86 E-value=1.9e-20 Score=178.11 Aligned_cols=288 Identities=14% Similarity=0.116 Sum_probs=212.1
Q ss_pred HHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCccceeehhH
Q 037598 36 AFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMP 115 (360)
Q Consensus 36 ~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~ 115 (360)
++.++++++|+|++++|..+++.|...+++.+++.+.++.++..++.|+..+.++. .++.+++++.+||+ +.++..+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~--~~~~~~~~~~~G~~-~g~~~~~ 79 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGG--ASFNTIAKDLLGKT-GNIIAGL 79 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHhCHH-HHHHHHH
Confidence 34578999999999999999999999999999999999999999999997666643 38999999999975 4557788
Q ss_pred HHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 037598 116 QQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALI 195 (360)
Q Consensus 116 ~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 195 (360)
...+.++..+.+|.+..++.+..+++...+. ..+.....+++.+++.+ ...++.+...+++.+.+...+..++++++
T Consensus 80 ~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~v~~~-l~~~G~~~~~~v~~i~~~~~l~~l~~~ii 156 (381)
T TIGR00837 80 SLLFVLYILTYAYISGGGSILSRLIGEYFGF--PWSARAIVLIFTVLFGS-FVWLSTSAVDRITRVLIFGKIIAFALVFS 156 (381)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999988764322 12333333334444434 34457788888888877766554443333
Q ss_pred HhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 037598 196 TSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYL 275 (360)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~i~~~~Y~ 275 (360)
....+.. .+...+....+..+.++..+++...++|++|.+++++.+|+ +|+ +++++|++..+..+++++|+
T Consensus 157 ~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~lY~ 227 (381)
T TIGR00837 157 GLLPHVK----GDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALVLYI 227 (381)
T ss_pred HHHhhcc----HHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHHHHH
Confidence 3332211 11111111112356688899999999999999999999999 766 55788999999999999999
Q ss_pred HHHhhhhhccCCCchh----------h---HhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcc
Q 037598 276 SVGISGYWAFGQYVED----------D---VLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHM 338 (360)
Q Consensus 276 ~~g~~gy~~fG~~~~~----------~---il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~ 338 (360)
++........+.+.-. . ...+...+.+...+..++..+++.+++.-...+.+|.+.+.++++.
T Consensus 228 l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~ 303 (381)
T TIGR00837 228 LWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDD 303 (381)
T ss_pred HHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9877766665433221 1 1122122345677888899999999999999999999999887754
No 12
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.85 E-value=7.1e-20 Score=173.45 Aligned_cols=294 Identities=16% Similarity=0.238 Sum_probs=214.7
Q ss_pred CCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCc
Q 037598 28 RKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPR 107 (360)
Q Consensus 28 ~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~ 107 (360)
++.+.+++++.+.++.+|+|+|+||.+.+..|..++.+.+++++..++++..++.|.....++ ..++.+++++.+||+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~--~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE--GSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhChH
Confidence 356789999999999999999999999999999999999999999999999999999654443 349999999999974
Q ss_pred cceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q 037598 108 FGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSI 187 (360)
Q Consensus 108 ~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~~ 187 (360)
|+++..+...+..++.+++|....++.+++.++...+ .+.++....+++.++...+... +-+...+++.+-+...+
T Consensus 79 -g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 79 -GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMI 154 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999988653 1234444444444443333332 33455555555554333
Q ss_pred HHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhHHH
Q 037598 188 CYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAY 267 (360)
Q Consensus 188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~ 267 (360)
..+.......+-+. +.+.-......+.++.....++|+.++||..|.++|++.+.++ +|++ |.+|++..+.
T Consensus 155 ~~~~~l~~~~~p~~----~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~~--k~~~ai~~Gs 225 (394)
T PF03222_consen 155 ISFIILVVYLIPHW----NPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDPK--KIRKAIIIGS 225 (394)
T ss_pred HHHHHHHHHHhhhc----CHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccHH--HHHHHHHHHH
Confidence 33333222222211 1111111122356788889999999999999999999999983 3443 4569999999
Q ss_pred HHHHHHHHHHHhhhhhcc-----------CCCch--hhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHH
Q 037598 268 VIVAFCYLSVGISGYWAF-----------GQYVE--DDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYL 334 (360)
Q Consensus 268 ~i~~~~Y~~~g~~gy~~f-----------G~~~~--~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~ 334 (360)
.+..++|++.-...-..- +++.. ...+.+...+.+...+..++-.+++.+||--....++|.+++.+
T Consensus 226 ~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 305 (394)
T PF03222_consen 226 LIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLF 305 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998644332211 11111 12334444556778889999999999999999999999999999
Q ss_pred hh
Q 037598 335 VQ 336 (360)
Q Consensus 335 ~~ 336 (360)
+.
T Consensus 306 k~ 307 (394)
T PF03222_consen 306 KL 307 (394)
T ss_pred cC
Confidence 76
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.81 E-value=2.9e-18 Score=161.93 Aligned_cols=290 Identities=16% Similarity=0.185 Sum_probs=207.7
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCccce
Q 037598 31 KWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGY 110 (360)
Q Consensus 31 s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~g~ 110 (360)
+.+.+++.+.++.+|+|+|+||.+....|..++++++++++.+..|+++++.|+....++ ..++.+++++.+||+ |+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~--~~~~~~~a~~~LG~~-g~ 80 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA--DTGLGTLAKRYLGRY-GQ 80 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHhChH-HH
Confidence 678999999999999999999999999999999999999999999999999998553332 348999999999975 56
Q ss_pred eehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 037598 111 WFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYS 190 (360)
Q Consensus 111 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~~~~~ 190 (360)
++..+...+..+..+.+|....++.+.+.++.+.+.. .+.....+++.++.....+ .+.+...+++.+-+...+..+
T Consensus 81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~--i~~~~~~l~F~~~~~~iv~-~g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGIS--MSPTAGVLLFTLVAGGVVC-VGTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCC--CChHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999987754322 2333333344433333332 244555555555444333322
Q ss_pred HHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhHHHHHH
Q 037598 191 MVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIV 270 (360)
Q Consensus 191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~i~ 270 (360)
+.......-+- +.+.-... +.+......++|++++||+.|.++|++.+.+ ++.. +|.+|++.++..+.
T Consensus 158 ~~~~~~l~p~~----~~~~L~~~---~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~----~~~~-~~~~k~i~~Gs~i~ 225 (403)
T PRK15132 158 VVMLALMMPHI----HKVNLLTL---PLQQGLALSAIPVIFTSFGFHGSVPSIVSYM----GGNI-RKLRWVFIIGSAIP 225 (403)
T ss_pred HHHHHHHHHhc----CHHHHhcC---CccccHHHHHHHHHHHHhhCCcccHHHHHHh----CcCH-HHHHHHHHHHHHHH
Confidence 22222211111 11111110 1111248899999999999999999999998 4432 35669999999999
Q ss_pred HHHHHHHHhhhhhccCCCc----------hhhHhhcc---cCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhc
Q 037598 271 AFCYLSVGISGYWAFGQYV----------EDDVLISL---RKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQH 337 (360)
Q Consensus 271 ~~~Y~~~g~~gy~~fG~~~----------~~~il~~~---~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 337 (360)
.++|++.-..+...-+.+. -++.+..+ .+..+...+..++..+++.+||--....++|.+.+.++++
T Consensus 226 li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~ 305 (403)
T PRK15132 226 LVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR 305 (403)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999987665555444321 01222322 2446778888999999999999999999999999999754
Q ss_pred c
Q 037598 338 M 338 (360)
Q Consensus 338 ~ 338 (360)
.
T Consensus 306 ~ 306 (403)
T PRK15132 306 N 306 (403)
T ss_pred c
Confidence 3
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.71 E-value=9.9e-16 Score=145.04 Aligned_cols=294 Identities=12% Similarity=0.055 Sum_probs=205.0
Q ss_pred HHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCccceeeh
Q 037598 34 YSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFV 113 (360)
Q Consensus 34 ~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~ 113 (360)
.=.+.+.++++|+|+|.+|....+.||...++..++...+.+++..++.|.....+. +..++.|++++.+|+++|+ +.
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G~-ii 84 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWGI-LI 84 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHHH-HH
Confidence 335688999999999999999999999988888888888889999999998332222 1249999999999987776 67
Q ss_pred hHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 037598 114 MPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVA 193 (360)
Q Consensus 114 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~~~~~~i~ 193 (360)
.+...+..+..+.+|.....+.+.+++....... .+.+....+..++++-.....+.+.+.+++.+-+...+..+++.
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~--~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l 162 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGTA--PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLL 162 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888899999999999999998887654221 12232333333333334445577777777777665444333333
Q ss_pred HhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCC--CCCcchhhhHHHHHHH
Q 037598 194 LITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPS--KKPMWKGVVVAYVIVA 271 (360)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~--~~~~~~~~~~~~~i~~ 271 (360)
.....-+. +.+.-...+.....+.+...+.+..++||.+|+++|+.....|++-+||+ ++|.+|++..+..+..
T Consensus 163 ~~~lip~~----~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~ 238 (397)
T TIGR00814 163 SLYLIPHW----NGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILV 238 (397)
T ss_pred HHHHHHHc----CHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 33322221 11111100111224678999999999999999999999833321114343 4566799999999999
Q ss_pred HHHHHHHhhhhhccCCCchh-------hHhh---cccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHh
Q 037598 272 FCYLSVGISGYWAFGQYVED-------DVLI---SLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLV 335 (360)
Q Consensus 272 ~~Y~~~g~~gy~~fG~~~~~-------~il~---~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 335 (360)
++|+..-..+....+.+.-. +++. |-.+..+...+..++-.+++..||--....++|.+++.+.
T Consensus 239 ~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 239 ATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999888877777643321 1222 1123356667778888889999999999999999999884
No 15
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.69 E-value=4.6e-15 Score=139.79 Aligned_cols=294 Identities=14% Similarity=0.068 Sum_probs=199.9
Q ss_pred HHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCccceeehhHH
Q 037598 37 FHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQ 116 (360)
Q Consensus 37 ~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~ 116 (360)
..+.++.+|+|+|+||-.....|..+.++.+++++.+++++.+.+.|.....++ +..++.+++++.+|+++|. +..++
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-~~~~i~~v~~~~lG~~g~~-i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-PSGNITETVEEHFGKTGGV-VITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHcChhHHH-HHHHH
Confidence 788999999999999999999999999999999999999999999998543322 2359999999999986654 88899
Q ss_pred HHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHhH
Q 037598 117 QMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALIT 196 (360)
Q Consensus 117 ~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~ 196 (360)
..+..+..+.+|.....+.+.+.+.+..+.. +.++....+++.++....... +-+.+-+++..-+...+..++....+
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql~~~-~~~r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l~~l~~~ 181 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQLGFA-PLNRGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASLVLISLS 181 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcC-CccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999777777777655544321 234444444444444443333 33555555554444333322222222
Q ss_pred hhhcCCCCCCccccc----cCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCC---CCC--CCCcchhhhHHH
Q 037598 197 SIKKGIHHRPESYGV----RSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPE---VPS--KKPMWKGVVVAY 267 (360)
Q Consensus 197 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~---~p~--~~~~~~~~~~~~ 267 (360)
.+-+-..+ ...... +.............++|.+++||..|.++|++...+|++-+ +++ ++|.+|++..+.
T Consensus 182 LiP~w~~~-~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs 260 (443)
T PRK13629 182 LIPYWNSA-VIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRAS 260 (443)
T ss_pred HHHHcCHH-HHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 22111110 111000 00000111245788999999999999999999988543212 334 567779999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCc-------hhhHhhc----ccC---c-----hHHHHHHHHHHHHHHHhhhhcccccHHH
Q 037598 268 VIVAFCYLSVGISGYWAFGQYV-------EDDVLIS----LRK---P-----AWLIAIANFMVFFHVVGSYQVFAMPVFD 328 (360)
Q Consensus 268 ~i~~~~Y~~~g~~gy~~fG~~~-------~~~il~~----~~~---~-----~~~~~~~~~~~~i~~~~s~pl~~~p~~~ 328 (360)
.+..++|++.-+.+...-+++. +.+++.. +++ . .+...+..++-.+++..||--....++|
T Consensus 261 ~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E 340 (443)
T PRK13629 261 MLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLE 340 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877777665433 1122222 222 1 4466777888888999999999999999
Q ss_pred HHHHHHh
Q 037598 329 MIESYLV 335 (360)
Q Consensus 329 ~~~~~~~ 335 (360)
.++..+.
T Consensus 341 ~l~gl~~ 347 (443)
T PRK13629 341 GLNGLIL 347 (443)
T ss_pred HHHHHHH
Confidence 9999984
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.51 E-value=4.6e-13 Score=126.44 Aligned_cols=287 Identities=15% Similarity=0.164 Sum_probs=184.7
Q ss_pred CCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCc
Q 037598 28 RKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPR 107 (360)
Q Consensus 28 ~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~ 107 (360)
+|.|.+|..+.++++++|+|++.+|....+.+-..+++..++.+.+......++.+...+.|++ +..+..++++||+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~---~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK---NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhhHH
Confidence 3688999999999999999999999987775555678888999999999999999997767764 7999999999988
Q ss_pred cceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q 037598 108 FGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSI 187 (360)
Q Consensus 108 ~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~~ 187 (360)
.|+.+. +....+.+..+.......++.+.... .+ .+..+...+..++..-....++++...+++.+.....+
T Consensus 78 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---l~----~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 78 LGRLLS-ILFILYFFLIAAYLIRIFADFIKTYL---LP----RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh---cC----CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 777543 33444444433322223333332211 11 11222333333333344455678888877777665444
Q ss_pred HHH-HHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHH-HHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhH
Q 037598 188 CYS-MVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLG-TVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVV 265 (360)
Q Consensus 188 ~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~ 265 (360)
... +++........ +.+.-. +..+.++.+...+.- ...++|.+.........++ |||++ .+|+...
T Consensus 150 ~~~~~il~~~~~~~~----~~~~l~--P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~k~~~~ 217 (359)
T TIGR00912 150 ILFILVLILLAPKLG----NIKNLL--PVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK--IKKSIIK 217 (359)
T ss_pred HHHHHHHHHHhcccc----cHHHcc--CccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--hHHHHHH
Confidence 331 11211111111 122111 112345566666554 7889999999888888988 77754 5599999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCchhh-------HhhcccCch---HHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHh
Q 037598 266 AYVIVAFCYLSVGISGYWAFGQYVEDD-------VLISLRKPA---WLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLV 335 (360)
Q Consensus 266 ~~~i~~~~Y~~~g~~gy~~fG~~~~~~-------il~~~~~~~---~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 335 (360)
+..++.++|.+.-......+|.+..++ ..+...-++ ....+.........+.+.-+..+.....+.+.++
T Consensus 218 ~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~ 297 (359)
T TIGR00912 218 AIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFK 297 (359)
T ss_pred HHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999888888888543321 122221111 2223334445567777777888888888888886
Q ss_pred hc
Q 037598 336 QH 337 (360)
Q Consensus 336 ~~ 337 (360)
.+
T Consensus 298 ~~ 299 (359)
T TIGR00912 298 KR 299 (359)
T ss_pred CC
Confidence 54
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.51 E-value=7.1e-13 Score=128.28 Aligned_cols=245 Identities=11% Similarity=0.084 Sum_probs=151.0
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
+++|+.+.++.+...+++++|+|++.+|...++.|.. .+...++.++.....+..+.|...+.|... ...+.+++ +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-H
Confidence 4678999999999999999999999999999988864 677788888888888888888866666543 55556777 7
Q ss_pred CCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 037598 105 GPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAV 184 (360)
Q Consensus 105 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~ 184 (360)
||++|....+ ......+....++.+...+++..+++... .+.... ...+..+..+-+...+..+..+.+..+..+
T Consensus 78 g~~~gf~~gw-~~~~~~~~~~~~~~~~~~~y~~~~~p~~~---~~~~~~-~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~ 152 (435)
T PRK10435 78 SPAFGFQTGV-LYYHANWIGNLAIGITAVSYLSTFFPVLN---DPIPAG-IACIAIVWVFTFVNMLGGTWVSRLTTIGLV 152 (435)
T ss_pred CcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccccC---ChHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9988875443 33322222233333334445544443211 011111 111111111122223344444444444443
Q ss_pred HHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhh
Q 037598 185 MSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVV 264 (360)
Q Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 264 (360)
..+..++.+......+..++ ......+ ...+.++.++..++....|+|.|.+......+|+ |||+| +++|++.
T Consensus 153 ~~li~~~~~~i~g~~~~~~~-~~~~~~~-~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~iPrAi~ 225 (435)
T PRK10435 153 LVLIPVVGTAIVGWHWFDAA-TYAANWN-TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TVPLATM 225 (435)
T ss_pred HHHHHHHHHHHHHHHHcCHH-hhccccc-CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cccHHHH
Confidence 32222211111111111111 1110111 1123456789999999999999999999999999 99976 7899999
Q ss_pred HHHHHHHHHHHHHHhhhhhcc
Q 037598 265 VAYVIVAFCYLSVGISGYWAF 285 (360)
Q Consensus 265 ~~~~i~~~~Y~~~g~~gy~~f 285 (360)
.+..++.++|++.........
T Consensus 226 ~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 226 LGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999877654444
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=99.51 E-value=3.6e-12 Score=123.58 Aligned_cols=241 Identities=10% Similarity=-0.019 Sum_probs=147.0
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcC
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFG 105 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G 105 (360)
++|+.+.++.+...+++++|+|++.+|..+++.|. .+++..++.+++.......+.|.....|... .....+++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G--G~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG--GMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--chHHHHHHHcC
Confidence 46789999999999999999999999998888886 5788888899998989999999854454432 45667889999
Q ss_pred CccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHH--HhhcCCCCCchhHHHHHHH
Q 037598 106 PRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHL--VLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 106 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~l--pl~~~~~l~~l~~~s~~~~ 183 (360)
|++|....+. ..+.......++.....+++..+++.. .+.....++..++.+ -..-.+..+....+..+..
T Consensus 81 ~~~gf~~gw~-~~~~~~~~~~~~a~~~~~y~~~~~~~~------~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~ 153 (438)
T PRK10655 81 KSGNFMANYT-YGVSLLIANVAIAISAVGYGTELFGAT------LSPVQICLATIGVLWLCTVANFGGARITGQISSVTV 153 (438)
T ss_pred cchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccc------cchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9888654443 333232222222222233333333210 111111111111111 2222334444444444433
Q ss_pred HHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhh
Q 037598 184 VMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGV 263 (360)
Q Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~ 263 (360)
...+..++++.+.......++ +...... ......+.++..++....|+|.|.+....+.+|+ |||+| +++|++
T Consensus 154 ~~~l~~l~~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi 226 (438)
T PRK10655 154 WGVIIPVVGLSIIGWFWFSPS-LYVAAWN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVPIAV 226 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCcc-cccCCcC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-cccHHH
Confidence 332222222222111111111 1111111 1111224567788889999999999999999999 99987 799999
Q ss_pred hHHHHHHHHHHHHHHhhhhh
Q 037598 264 VVAYVIVAFCYLSVGISGYW 283 (360)
Q Consensus 264 ~~~~~i~~~~Y~~~g~~gy~ 283 (360)
..+..++.++|++.......
T Consensus 227 ~~~~~~~~~~Y~l~~~~~~~ 246 (438)
T PRK10655 227 LGGTLGAAVIYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987655443
No 19
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.49 E-value=3.9e-12 Score=126.32 Aligned_cols=297 Identities=13% Similarity=0.062 Sum_probs=178.4
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHH
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLPFAF--SQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEH 102 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f--~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~ 102 (360)
+.+|+.+.++.....++.++|+|++.+|... ..+|.. .++.+++.++.+...+..+.|...+.|... +....+++
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sG--g~Y~y~~~ 101 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAG--SAYLYSYV 101 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cceeeHHH
Confidence 4688999999999999999999999998653 357865 577788888999999999999866565432 33444677
Q ss_pred hcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccC---------Cccc-chhHHHHHHHHHHHHhhcCCCC
Q 037598 103 CFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHN---------VENV-RLTYFILIFACLHLVLSQTPNF 172 (360)
Q Consensus 103 ~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~---------~~~~-~~~~~~~i~~~i~lpl~~~~~l 172 (360)
.+|+.+|....+. .++.....+.+.....++++..++....++ .+.. .......+..++.+-....++.
T Consensus 102 ~~G~~~gfi~GW~-~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gi 180 (557)
T TIGR00906 102 TVGELWAFITGWN-LILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV 180 (557)
T ss_pred HhCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhch
Confidence 8998887644443 333333333333344455555554321110 0000 0111122222222223444677
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCccc--cc-cCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCC
Q 037598 173 NSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESY--GV-RSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPS 249 (360)
Q Consensus 173 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~ 249 (360)
+..++++.+..+..+..++++++....+...+ +... .. .+...+.++.+++.+.....|+|.|.+.+....+|+
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~-~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~-- 257 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVA-NWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV-- 257 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch-hccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc--
Confidence 77777777666655544333333333222111 1110 00 012224566788999999999999999999999999
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHHHhhhhhccCCC---chh---hHhhcccCchHHHHHHHHHHHHHHHhhhhccc
Q 037598 250 TPEVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQY---VED---DVLISLRKPAWLIAIANFMVFFHVVGSYQVFA 323 (360)
Q Consensus 250 ~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~---~~~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 323 (360)
|||+| +++|++..++.+++++|+++...-....+.+ .++ ...... ..++...+..+...+..+.+....+
T Consensus 258 --knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~-g~~~~~~ii~~~~~~~~~~sl~~~~ 333 (557)
T TIGR00906 258 --KNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYV-GWGPAKYIVAVGALCGMSTSLLGGM 333 (557)
T ss_pred --cCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 7999999999999999999876543332211 111 122222 2244444555555555555544444
Q ss_pred ccHHHHHHH
Q 037598 324 MPVFDMIES 332 (360)
Q Consensus 324 ~p~~~~~~~ 332 (360)
+...+.+..
T Consensus 334 ~~~sRil~a 342 (557)
T TIGR00906 334 FPLPRVIYA 342 (557)
T ss_pred HHHHHHHHH
Confidence 444444443
No 20
>TIGR00909 2A0306 amino acid transporter.
Probab=99.46 E-value=6.5e-12 Score=121.46 Aligned_cols=291 Identities=13% Similarity=0.048 Sum_probs=181.0
Q ss_pred cCCchHHHHHHHHHhhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcC
Q 037598 27 SRKAKWWYSAFHNVTAMVGAGVLGLPFAFS-QLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFG 105 (360)
Q Consensus 27 ~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~-~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G 105 (360)
+|+.+.++..+..+++++|+|++.+|.... ..|. ..++..++.++.....+..+.|...+.|+.. ...+..++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAG--SPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--cceeeHHHHhC
Confidence 578999999999999999999999987655 4454 4566777788888888888888866565532 45566888999
Q ss_pred CccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCccc--------chhHHHHHHHHHHHHhhcCCCCCchhH
Q 037598 106 PRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENV--------RLTYFILIFACLHLVLSQTPNFNSLKG 177 (360)
Q Consensus 106 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~--------~~~~~~~i~~~i~lpl~~~~~l~~l~~ 177 (360)
|+.|....+ ...+.....+..+....++.+..+++....+.+.. ....+..+...+.+-....+..+..++
T Consensus 79 ~~~g~~~gw-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 79 ELTAFIIGW-SLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 988875444 44555555566666666777777765321110000 000111222222333334456777777
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCC
Q 037598 178 VSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKK 257 (360)
Q Consensus 178 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~ 257 (360)
++.+.....+..++++++....+...+ +.+ ...+.++.++..++....|+|.|.+......+|+ |||+|
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r- 226 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASN-NYT-----PFMPMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER- 226 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHH-hcC-----CCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc-
Confidence 777666655443333222222221111 111 1123456678899999999999999999999999 99975
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhccCCC----ch---hhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHH
Q 037598 258 PMWKGVVVAYVIVAFCYLSVGISGYWAFGQY----VE---DDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMI 330 (360)
Q Consensus 258 ~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~----~~---~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 330 (360)
+.+|++..+..++.++|++.........+.+ .+ ..+.... ..++...+..+...++.+.+.--......+.+
T Consensus 227 ~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~ 305 (429)
T TIGR00909 227 DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDL-GQGIGGLILTAGAVFSIASVMLAGIYGTSRVL 305 (429)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999876544332211 00 1122222 22444455666666666666655555554444
Q ss_pred HHH
Q 037598 331 ESY 333 (360)
Q Consensus 331 ~~~ 333 (360)
...
T Consensus 306 ~~~ 308 (429)
T TIGR00909 306 FAM 308 (429)
T ss_pred HHH
Confidence 443
No 21
>PRK11021 putative transporter; Provisional
Probab=99.44 E-value=1.4e-11 Score=118.35 Aligned_cols=229 Identities=13% Similarity=0.129 Sum_probs=141.8
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCccc
Q 037598 31 KWWYSAFHNVTAMVGAGVLGLPFAF-SQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFG 109 (360)
Q Consensus 31 s~~~~~~~l~~~~vG~GiL~lP~~f-~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~g 109 (360)
+.+++....+++++|+|++.+|... +.+|- ..++..++.+++.......+.|.....|+.. .....+++.+||++|
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG--G~y~y~~~~~G~~~g 78 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAG--GPAHFVGMAFGPRLG 78 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHhHHHHhCchhH
Confidence 6789999999999999999988664 45564 5788888899999999999999966666543 666778999999988
Q ss_pred eeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q 037598 110 YWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICY 189 (360)
Q Consensus 110 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~~~~ 189 (360)
....+........+ ..+......+.+...++. ..... ....+...+.+-+.-.+..+..++++....+ ..
T Consensus 79 f~~gw~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~---~~ 148 (410)
T PRK11021 79 RVTGWLFLSVIPVG-LPAALQIAAGFGQALFGW-----SSWQL-LLAELLTLALLWLLNLRGASSSANLQTVIAL---LI 148 (410)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHcCC-----CCchH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HH
Confidence 75554433222122 111212222233322211 11111 1111111222222233455555444443332 21
Q ss_pred HHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhHHHHH
Q 037598 190 SMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVI 269 (360)
Q Consensus 190 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~i 269 (360)
+.++... ...+..+ ..+...+ ...+.++.++..++....|+|.|.+......+|+ |||+| +++|++..+..+
T Consensus 149 ~~i~~~~-~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~~~~~ 220 (410)
T PRK11021 149 VALVVAI-WWAGDIK-PADIPFP-APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMIGLLL 220 (410)
T ss_pred HHHHHHH-HHHcCCc-hhcCCCC-CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHHHHHH
Confidence 1111111 1112111 1111111 1123467889999999999999999999999999 99987 799999999999
Q ss_pred HHHHHHHHHhh
Q 037598 270 VAFCYLSVGIS 280 (360)
Q Consensus 270 ~~~~Y~~~g~~ 280 (360)
+.++|++....
T Consensus 221 ~~~lYil~~~~ 231 (410)
T PRK11021 221 AGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 22
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.44 E-value=2e-11 Score=118.88 Aligned_cols=242 Identities=14% Similarity=0.073 Sum_probs=151.4
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLP-FAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP-~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
.+|+.+.++..+..+++++|+|++..| .+.+.+|. .+++..++.+++....+..+.|.....|... +..+.+++.+
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G--g~~~~~~~~~ 86 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG--SFSTYADDAI 86 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHh
Confidence 578899999999999999999999999 66778886 4788888899999999999999866566543 6778899999
Q ss_pred CCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 037598 105 GPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAV 184 (360)
Q Consensus 105 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~ 184 (360)
||++|....+ .........+.+.....++.+..+.+. .+...+.+++.+ ..-..-....+..+++.....+
T Consensus 87 g~~~gf~~gw-~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~-~~~~~n~~gv~~~~~~~~~~~~ 157 (452)
T TIGR01773 87 GRWAGFTIGW-LYWWFWVLVIPLEAIAAAGILQYWFPD-------IPLWLFSLILTI-VLTLTNLYSVKSYGEFEFWFAL 157 (452)
T ss_pred CcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCc-------CcHHHHHHHHHH-HHHHHHHHhcchhhHHHHHHHH
Confidence 9988774443 344433334443434444444433221 122221111111 1222222345555544444333
Q ss_pred HHHHHH---HHHHhHhhhcCCCCCC---cccccc-CCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCC
Q 037598 185 MSICYS---MVALITSIKKGIHHRP---ESYGVR-SHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKK 257 (360)
Q Consensus 185 ~~~~~~---~i~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~ 257 (360)
..+..+ ++..........+..+ .+...+ ....+.++.++..++....|+|.|.+......+|+ |||+|
T Consensus 158 ~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~----k~P~r- 232 (452)
T TIGR01773 158 IKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES----SNPIK- 232 (452)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh----cChhh-
Confidence 322222 1111111111111101 111001 11124456679999999999999999999999999 99987
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhc
Q 037598 258 PMWKGVVVAYVIVAFCYLSVGISGYWA 284 (360)
Q Consensus 258 ~~~~~~~~~~~i~~~~Y~~~g~~gy~~ 284 (360)
+.+|++..+.....++|++........
T Consensus 233 ~iPrAi~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 233 SITRATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHeeE
Confidence 789999888888889999865544433
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=99.43 E-value=1.2e-11 Score=120.49 Aligned_cols=241 Identities=13% Similarity=0.062 Sum_probs=148.0
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHh
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLPFA-FSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~-f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
+.+|+.+.++..+..++.++|+|++..|.. .+.+|. ..++..++.+++....+..+.|.....|... +..+.+++.
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G--g~~~y~~~~ 94 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG--SFAHFAYKY 94 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Confidence 467889999999999999999999987754 556676 4788888999999999999999966666543 677889999
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
+||++|....+. ..+.......+.....+.++..+. + +.....+.+++.++. -..-.++.+..+++.....
T Consensus 95 ~g~~~gf~~gw~-~~~~~~~~~~~~~~a~~~~~~~~~----~---~~~~~~~~~~~~~l~-~~lN~~gv~~~~~i~~~~~ 165 (458)
T PRK10249 95 WGPFAGFLSGWN-YWVMFVLVGMAELTAAGIYMQYWF----P---DVPTWIWAAAFFIII-NAVNLVNVRLYGETEFWFA 165 (458)
T ss_pred hChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC----C---cCcHHHHHHHHHHHH-HHHHHhcchhhhhHHHHHH
Confidence 999888755543 333332222222222222222221 1 112222222222222 2222334444444433332
Q ss_pred HHHH---HHHHHHHhHhhhcCCCCC--Ccccccc-CCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCC
Q 037598 184 VMSI---CYSMVALITSIKKGIHHR--PESYGVR-SHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKK 257 (360)
Q Consensus 184 ~~~~---~~~~i~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~ 257 (360)
+..+ ..++++.......+.++. +.+...+ ....+.++.++..++....|+|.|.+......+|+ |||+|
T Consensus 166 ~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k- 240 (458)
T PRK10249 166 LIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPEK- 240 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhh-
Confidence 2222 222111111111111110 1111011 11124567788999999999999999999999999 99987
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhhh
Q 037598 258 PMWKGVVVAYVIVAFCYLSVGISGY 282 (360)
Q Consensus 258 ~~~~~~~~~~~i~~~~Y~~~g~~gy 282 (360)
+++|++..+.....++|++......
T Consensus 241 ~iPrai~~~~~~~~~~y~~~~~~~~ 265 (458)
T PRK10249 241 SIPKAVNQVVYRILLFYIGSLVVLL 265 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999987554433
No 24
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.42 E-value=3.5e-12 Score=118.91 Aligned_cols=236 Identities=20% Similarity=0.173 Sum_probs=171.3
Q ss_pred cccCCchHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHh
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
+.+|+.+.++.-+.-++..+|+|. ++-..+.+.+|... ++..+++|++.+.-++.|.|.....|... |+.+.+++.
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSv-lLaY~I~G~~~f~iMRaLGEm~~~~p~~g--SF~~~a~~~ 86 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSV-LLAYLIAGIFVFLIMRALGEMLVANPVSG--SFSDYARKY 86 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cHHHHHHHH
Confidence 457889999999999999999999 47899999999764 77888899999999999999855455544 999999999
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHH--HhhcCCCCCchhHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHL--VLSQTPNFNSLKGVSLL 181 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~l--pl~~~~~l~~l~~~s~~ 181 (360)
+||++|+ +.......+....+++-+...+.+++.+++.. +.+.+.++..++.. =+..+|...++.+.-.+
T Consensus 87 lG~~Agf-~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-------P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 87 LGPWAGF-LTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-------PQWVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred hcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 45556777778888888888887777776552 34444444444433 36667888888855554
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCCCCccccc---c--CCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCC
Q 037598 182 AAVMSICYSMVALITSIKKGIHHRPESYGV---R--SHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSK 256 (360)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~ 256 (360)
-.+..+..++++....+..+.+.++...+. . ....|+++.++..++-+.+|||+|.+.+-....|- |||+|
T Consensus 159 IKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~dP~k 234 (462)
T COG1113 159 IKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----KDPEK 234 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----cChhh
Confidence 444444444333333333232221101111 1 12358889999999999999999999999999999 99987
Q ss_pred CCcchhhhHHHHHHHHHHHH
Q 037598 257 KPMWKGVVVAYVIVAFCYLS 276 (360)
Q Consensus 257 ~~~~~~~~~~~~i~~~~Y~~ 276 (360)
.++|++..-..-..++|+.
T Consensus 235 -~ipkAin~V~~RI~iFYvg 253 (462)
T COG1113 235 -AIPKAINSVIWRILIFYVG 253 (462)
T ss_pred -HHHHHHhhhhHHHHHHHHH
Confidence 6889988766666666663
No 25
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.42 E-value=2.4e-11 Score=118.89 Aligned_cols=248 Identities=12% Similarity=0.062 Sum_probs=151.9
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhCh-hHHHHHHHHHHHHHHHHHHHHhhcccccCC-cccCChHHHHHHh
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGW-GAGFAAIFGSWAITFYSLWQLVELHEVVPG-KRFDRYPELGEHC 103 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~-~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~-~~~~sy~~l~~~~ 103 (360)
++|+.|.+++.+..+++++|+|++.+|....+.|- ...++..++.++.....+..+.|.....|+ .. ...+.+++.
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG--G~y~y~~~~ 82 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG--GIYAYAREG 82 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhH
Confidence 36789999999999999999999999998776553 233566778888888888888888665665 32 456678999
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
+||++|....+. ..........++.....+.+..+++.... ..++.. ....+...+.+-....++.+..+++..+..
T Consensus 83 ~G~~~gf~~gw~-~~~~~~~~~~~~~~~~~~~l~~~~p~~~~-~~~~~~-~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~ 159 (473)
T TIGR00905 83 FGPYIGFMSGWG-YWLSAWIGNVAYAVLLFSALGYFFPLFGS-GNPVPS-ILGASVLLWVFTFLVLRGVRQAAFINTITT 159 (473)
T ss_pred cccccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCcHHH-HHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999888754443 33333333344444444555555553211 011111 111111111222333446666666666555
Q ss_pred HHHHHHHHHHHhHhhhcCCCCCCccccccCC---ccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcc
Q 037598 184 VMSICYSMVALITSIKKGIHHRPESYGVRSH---TEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMW 260 (360)
Q Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~ 260 (360)
...+..++++++........+ +....+.+. .....+..+..++....|+|.|.+......+|+ || + ++.+
T Consensus 160 ~~~l~~l~~~ii~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~-~-r~iP 232 (473)
T TIGR00905 160 IAKLIPLFLFIIIGWFWFKLD-LFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN-K-SDVG 232 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCch-hcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc-c-ccch
Confidence 443332222222111111111 111011011 112345678888999999999999999999999 88 4 5889
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhcc
Q 037598 261 KGVVVAYVIVAFCYLSVGISGYWAF 285 (360)
Q Consensus 261 ~~~~~~~~i~~~~Y~~~g~~gy~~f 285 (360)
|++..+..++.++|++.........
T Consensus 233 rai~~~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 233 KATVLGTLGALVIYILITLLSLGVL 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999998876544433
No 26
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.41 E-value=2.8e-11 Score=118.33 Aligned_cols=241 Identities=13% Similarity=0.078 Sum_probs=143.2
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHh
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLP-FAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP-~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
+.+|+.+.++.....+++++|+|++..| .+++++|. ..+...++.+++.......+.|.....+.. .++.+.+++.
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~--~~~~~ya~~~ 93 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEY--KSFSDFASDL 93 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHH
Confidence 4688999999999999999999999875 57888887 457777788888888888888874322322 2567889999
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
+||.+|....+. ..........+.....+.++..+.+. .....+.+++..++ -+.-..+.+..+.++.+..
T Consensus 94 ~g~~~gf~~gW~-~~~~~~~~~~a~~~a~~~~~~~~~p~-------~~~~~~~~~~~~~~-~~iN~~g~~~~~~i~~~~~ 164 (469)
T PRK11049 94 LGPWAGYFTGWT-YWFCWVVTGIADVVAITAYAQFWFPD-------LSDWVASLAVVLLL-LSLNLATVKMFGEMEFWFA 164 (469)
T ss_pred hCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHH
Confidence 999888755544 33322222222233333333322211 12222222211111 1122234444444444433
Q ss_pred HHHHHHHHHHHhHh---hhcCC--CCCC---cccccc-CCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCC
Q 037598 184 VMSICYSMVALITS---IKKGI--HHRP---ESYGVR-SHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVP 254 (360)
Q Consensus 184 ~~~~~~~~i~~~~~---~~~~~--~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p 254 (360)
+..+..++++++.. ...+. ++++ .+...+ ....+.++.++..++....|+|.|.+.+....+|+ |||
T Consensus 165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP 240 (469)
T PRK11049 165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET----KDP 240 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----cCH
Confidence 33222222222111 11111 1100 110001 11124456778999999999999999999999999 999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHhhhh
Q 037598 255 SKKPMWKGVVVAYVIVAFCYLSVGISGY 282 (360)
Q Consensus 255 ~~~~~~~~~~~~~~i~~~~Y~~~g~~gy 282 (360)
+| +++|++..+.....++|++......
T Consensus 241 ~r-~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 241 EK-SLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 87 7899998777778888887665543
No 27
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.40 E-value=1.1e-11 Score=120.42 Aligned_cols=244 Identities=14% Similarity=0.122 Sum_probs=145.4
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
+++|+.+.++.+...++.++|+|++.+|....+.|.. .+...++.++.....+..+.|.....|... ...+.+++.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~aG--G~y~~~~~~~ 81 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSPG--GSYAYARRCF 81 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHHHc
Confidence 3578899999999999999999999999998887753 456677777777778888888865565432 4455588899
Q ss_pred CCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHh--hcCCCCCchhHHHHHH
Q 037598 105 GPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVL--SQTPNFNSLKGVSLLA 182 (360)
Q Consensus 105 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl--~~~~~l~~l~~~s~~~ 182 (360)
||++|....+. ..+.......+......++...+.+.. . +.....++..++.+.+ .-.+..|...++..+.
T Consensus 82 g~~~gf~~gw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~ 154 (445)
T PRK10644 82 GPFLGYQTNVL-YWLACWIGNIAMVVIGVGYLSYFFPIL----K--DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_pred CchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccc----C--CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 99887643332 232222222222222233333333221 0 1111111112222222 2233445555555544
Q ss_pred HHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchh
Q 037598 183 AVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKG 262 (360)
Q Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~ 262 (360)
....+..++++....+.....+ ....+.+ ......+..+..++....|+|.|.+......+|+ |||+| +.+|+
T Consensus 155 ~~~~~i~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iPra 227 (445)
T PRK10644 155 TVLALIPIVGIAVFGWFWFRGE-TYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIA 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCch-hccCCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCccc-chhHH
Confidence 4433322222211111111111 1111111 1112345567788889999999999999999999 99987 78999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcc
Q 037598 263 VVVAYVIVAFCYLSVGISGYWAF 285 (360)
Q Consensus 263 ~~~~~~i~~~~Y~~~g~~gy~~f 285 (360)
+..+..++.++|++..+......
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999877644333
No 28
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.40 E-value=1.5e-12 Score=123.04 Aligned_cols=245 Identities=17% Similarity=0.198 Sum_probs=159.7
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhhchHHHHHHh-hC-hhHHHHHHHHHHHHHHHHHHHHhhccc--ccCCcccCChHHH
Q 037598 24 ITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQ-LG-WGAGFAAIFGSWAITFYSLWQLVELHE--VVPGKRFDRYPEL 99 (360)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~-~G-~~~g~i~ll~~~~~~~~t~~~l~~~~~--~~~~~~~~sy~~l 99 (360)
...+||.+.+.+++.+++.++|+|++..|....+ +| ..++.++.+++++++...+.+..|.-. .++|. +|.-
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~ay- 83 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYAY- 83 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chhh-
Confidence 3457889999999999999999999999987554 43 244566677799999999999999833 34554 3333
Q ss_pred HHHhcCCccceeehhHHHHHHHhhhhheeeeecccc-hHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHH
Q 037598 100 GEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKS-LMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGV 178 (360)
Q Consensus 100 ~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~ 178 (360)
..++|||.++....++...+..-..+..+.+..+++ +.+.++ . |+ ..+...-.+..+++..+.+. |...+++.
T Consensus 84 i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~---c~-~p~~~~~lla~~~l~~lt~~-n~~~V~~a 157 (479)
T KOG1287|consen 84 ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L---CD-VPRVASKLLAAALLVLLTLI-NSFSVKWA 157 (479)
T ss_pred HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C---CC-CchHHHHHHHHHHHHHHHHH-hhhhhhHH
Confidence 556689877765555544444444444455555555 555544 2 22 23333333333333334333 55666666
Q ss_pred HHHHHHHHH---HHHHHHHhHhhh---cCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCC
Q 037598 179 SLLAAVMSI---CYSMVALITSIK---KGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPE 252 (360)
Q Consensus 179 s~~~~~~~~---~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~ 252 (360)
+.+..++++ ..+.+++...++ .+..+ +.+... -....++..++..++-...|||.|.+.+-.+.+|+ |
T Consensus 158 ~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~-~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEi----k 231 (479)
T KOG1287|consen 158 TRVQIVFTIAKLLALLLIIITGLYLLFWGSTQ-NFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI----K 231 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchheeEecccc-cccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHhh----c
Confidence 666555443 333333332222 22222 222110 12234566778899999999999999999999999 9
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHhhhhhcc
Q 037598 253 VPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAF 285 (360)
Q Consensus 253 ~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~f 285 (360)
||.| ++|+++.+++.++++.|+++-+..+..-
T Consensus 232 nP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vl 263 (479)
T KOG1287|consen 232 NPRR-TLPRAILISIPLVTVIYVLVNVAYFTVL 263 (479)
T ss_pred Cccc-cchHHHHHhhHHHHHHHHHhHhheeEec
Confidence 9987 8999999999999999999876554443
No 29
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.39 E-value=1.8e-11 Score=113.62 Aligned_cols=287 Identities=14% Similarity=0.154 Sum_probs=190.1
Q ss_pred CchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCcc
Q 037598 29 KAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRF 108 (360)
Q Consensus 29 ~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~ 108 (360)
|.|..|....+..+++|+|++.+|....+.+- .|++..++.+.......+++.+..++.+++ +..|..++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~---~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK---TLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhCcHH
Confidence 57889999999999999999999999776652 566667777777777777777776656765 89999999999888
Q ss_pred ceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q 037598 109 GYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSIC 188 (360)
Q Consensus 109 g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~~~ 188 (360)
|+. ..+...+..+......+...+|.+.... . +.+..+......+++.-....++++.+.+.+.+-....+.
T Consensus 77 g~i-i~~~~~l~~l~~~~~~lr~~~~~i~~~~---l----p~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i 148 (320)
T PF03845_consen 77 GKI-INLLYILYFLLISALVLREFSEFIKTYL---L----PETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLI 148 (320)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh---c----CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 874 4444444444444433333343333322 1 1223344444444555566678888888866655554443
Q ss_pred HHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhHHHH
Q 037598 189 YSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYV 268 (360)
Q Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~ 268 (360)
..+++...... +.++..-.+..+.++.+..++.....+.|.+...+..+...+ ++|++.+ |....+..
T Consensus 149 ~~~~i~~~~~~------~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~~--k~~~~~~~ 216 (320)
T PF03845_consen 149 LLLLILLLSIP------NIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKKLK--KSLLIAIL 216 (320)
T ss_pred HHHHHHHHhcc------cCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHHH--HHHHHHHH
Confidence 33332222221 222211112336677889999888999999998888899988 7776544 99999999
Q ss_pred HHHHHHHHHHhhhhhccCCCchhh-------HhhcccCc---hHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcc
Q 037598 269 IVAFCYLSVGISGYWAFGQYVEDD-------VLISLRKP---AWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHM 338 (360)
Q Consensus 269 i~~~~Y~~~g~~gy~~fG~~~~~~-------il~~~~~~---~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~ 338 (360)
++.++|...-+.....||.+..++ ..+..+-+ +......-.......+.+.-+..+-..+.+.+.++.+.
T Consensus 217 ~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~ 296 (320)
T PF03845_consen 217 ISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKD 296 (320)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999998888888898643321 11111111 22333444555667777888888889999999887544
Q ss_pred C
Q 037598 339 R 339 (360)
Q Consensus 339 ~ 339 (360)
+
T Consensus 297 ~ 297 (320)
T PF03845_consen 297 Y 297 (320)
T ss_pred c
Confidence 3
No 30
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.37 E-value=6.6e-11 Score=115.77 Aligned_cols=245 Identities=13% Similarity=0.085 Sum_probs=144.2
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLPFA-FSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~~-f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
.+|+.+.++.....++.++|+|++..|.. .+.+|....++..++.+++.......+.|.....|... .+...+++.+
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG--G~y~y~~~~~ 89 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG--AFHVYAARYL 89 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHhc
Confidence 57889999999999999999999987755 56778544577788888899999999999866566543 6677889999
Q ss_pred CCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 037598 105 GPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAV 184 (360)
Q Consensus 105 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~ 184 (360)
||++|....+. ..+.....+.......+..+. ...++ .....+.++..++. -+...++.+..+.++.....
T Consensus 90 g~~~gf~~gw~-~~~~~~~~~~~~~~~~~~~~~----~~~p~---~~~~~~~~~~~~~~-~~in~~gvk~~~~~~~~~~~ 160 (471)
T PRK11387 90 GPATGYTVAWL-YWLTWTVALGSSLTAAGFCMQ----YWFPQ---VPVWPWCLLFCALI-FGLNVVSTRFFAEGEFWFSL 160 (471)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----hccCc---CcHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHH
Confidence 99888644443 333332222211222221221 11111 11122222222221 22222344444444333222
Q ss_pred HHHHHHHHHHh---HhhhcCC--CCCC----ccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCC
Q 037598 185 MSICYSMVALI---TSIKKGI--HHRP----ESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPS 255 (360)
Q Consensus 185 ~~~~~~~i~~~---~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~ 255 (360)
..+..++.++. ....... .+++ .+....+...+.+..++..++....|+|.|.+......+|+ |||+
T Consensus 161 ~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~ 236 (471)
T PRK11387 161 IKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET----ENPA 236 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cChh
Confidence 22221111111 1111000 0000 01000011113344567888888999999999999999999 9998
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHhhhhhccC
Q 037598 256 KKPMWKGVVVAYVIVAFCYLSVGISGYWAFG 286 (360)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG 286 (360)
| +++|++..+..++.++|+..........+
T Consensus 237 r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 237 K-VIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 7 79999999999999999988765444333
No 31
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.36 E-value=1.4e-11 Score=121.40 Aligned_cols=250 Identities=13% Similarity=0.120 Sum_probs=146.2
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhhchHHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHH
Q 037598 24 ITASRKAKWWYSAFHNVTAMVGAGVLGLPFA-FSQLGWG-AGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGE 101 (360)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~-f~~~G~~-~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~ 101 (360)
.+.+|+.+.++.....+++++|+|++..|.. ...+|-. ..++..++.+++....+..+.|.....|... ......+
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sG--G~y~~~~ 115 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSG--GEYNYIL 115 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhHH
Confidence 4568889999999999999999999998865 5556743 1234556777888888888888865555432 4556677
Q ss_pred HhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHH--HHHHHHhhcCCCCCchhHHH
Q 037598 102 HCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIF--ACLHLVLSQTPNFNSLKGVS 179 (360)
Q Consensus 102 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~--~~i~lpl~~~~~l~~l~~~s 179 (360)
+.+||++|....+........+.+..+....++++.. ...++.. .+.....++. .++.+-..-.++.+...+++
T Consensus 116 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~---~~~~~~~-~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~ 191 (501)
T TIGR00911 116 EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILT---PVFPDCE-VPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQ 191 (501)
T ss_pred hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCC-CchHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8899887765444322222222222222333333211 1111110 1111111111 12222222334556666665
Q ss_pred HHHHHHHHHHHHHHHhHhh---hcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCC
Q 037598 180 LLAAVMSICYSMVALITSI---KKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSK 256 (360)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~ 256 (360)
.+.....+..++++++..+ ..+..+ +.+....-.....++.++..++....|+|.|.+....+.+|+ |||+|
T Consensus 192 ~i~~~~~l~~l~~~ii~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~r 266 (501)
T TIGR00911 192 DIFTACKLLALLLIIITGWVQLGKGGVE-SLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPYR 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcc-ccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCchh
Confidence 5555444432222222221 122111 111100000112346678889999999999999999999999 99986
Q ss_pred CCcchhhhHHHHHHHHHHHHHHhhhhhcc
Q 037598 257 KPMWKGVVVAYVIVAFCYLSVGISGYWAF 285 (360)
Q Consensus 257 ~~~~~~~~~~~~i~~~~Y~~~g~~gy~~f 285 (360)
+.+|++..+..++.++|++....-....
T Consensus 267 -~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 267 -TLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999865543333
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.35 E-value=2.6e-11 Score=126.24 Aligned_cols=248 Identities=15% Similarity=0.170 Sum_probs=154.7
Q ss_pred ccccCCchHHHHHHHH-Hhhhhhhhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccc-cCCcccCChHHHH
Q 037598 24 ITASRKAKWWYSAFHN-VTAMVGAGVLG-LPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEV-VPGKRFDRYPELG 100 (360)
Q Consensus 24 ~~~~~~~s~~~~~~~l-~~~~vG~GiL~-lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~-~~~~~~~sy~~l~ 100 (360)
..+.++.++++.++.- +.+|+|+|++. +++...++|...++++++++++++..++..+.+.... .+... .-..+.
T Consensus 72 ~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG--G~Y~yi 149 (953)
T TIGR00930 72 PAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG--GAYYLI 149 (953)
T ss_pred CCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHH
Confidence 3456789999999988 99999999965 7888999998878899999999999999999998543 32211 234457
Q ss_pred HHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccC--Cccc-chhHHHHHHHHHHHHhhcCCCCCchhH
Q 037598 101 EHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHN--VENV-RLTYFILIFACLHLVLSQTPNFNSLKG 177 (360)
Q Consensus 101 ~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~--~~~~-~~~~~~~i~~~i~lpl~~~~~l~~l~~ 177 (360)
.+.+||.+|..+.+ ...+.....+..|.+..++++..+++..... ..+. ....+.++..+++..+. ....+...+
T Consensus 150 sralGp~~Gf~iG~-~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak 227 (953)
T TIGR00930 150 SRSLGPEFGGSIGL-IFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWENK 227 (953)
T ss_pred HHHhCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 78899988875554 4445555567778888888888877542110 0111 11222222222222222 234444444
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhcCCCC--CCcc-cc---ccCC---ccchhHhhHHHHHHHHHHHhcCCceehhhhccCC
Q 037598 178 VSLLAAVMSICYSMVALITSIKKGIHH--RPES-YG---VRSH---TEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIP 248 (360)
Q Consensus 178 ~s~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~-~~---~~~~---~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~ 248 (360)
+..+..+..+..++.+++..+...... .+.. +. +... ..+....++...++++++||.|......+-.|+
T Consensus 228 ~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl- 306 (953)
T TIGR00930 228 AQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL- 306 (953)
T ss_pred HHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 444333322222222222111111000 0000 00 0000 001122347888899999999999999999999
Q ss_pred CCCCCCCCCCcchhhhHHHHHHHHHHHHHHhh
Q 037598 249 STPEVPSKKPMWKGVVVAYVIVAFCYLSVGIS 280 (360)
Q Consensus 249 ~~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~ 280 (360)
|||+| ++++++..++.+++++|+++.+.
T Consensus 307 ---KnP~r-~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 307 ---KDPQK-AIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred ---cChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 89999999999999999998764
No 33
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.33 E-value=1.1e-10 Score=113.52 Aligned_cols=241 Identities=12% Similarity=0.080 Sum_probs=142.9
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHH
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLPFA-FSQLGWG-AGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEH 102 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~-f~~~G~~-~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~ 102 (360)
+.+|+.+.++.....++.++|+|++..|.. ....|-. ..++..++.+++....+..+.|.....|... ......++
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G--G~y~y~~~ 82 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG--ADYVYLKN 82 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CceeeHHH
Confidence 367889999999999999999999998876 4455643 3466677888888888999999855455332 22334678
Q ss_pred hcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhH--HHHHHHHHHHHhhcCCCCCchhHHHH
Q 037598 103 CFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTY--FILIFACLHLVLSQTPNFNSLKGVSL 180 (360)
Q Consensus 103 ~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~--~~~i~~~i~lpl~~~~~l~~l~~~s~ 180 (360)
.+||.+|....+.............+....++++.... + ++... ...+..++.+-..-.+..+...++..
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~----~----~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~ 154 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT----P----IDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQT 154 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C----CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 89988876544433322222222223333333333221 1 11111 11111111222223345555555555
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCCCCCccccccCC-ccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCc
Q 037598 181 LAAVMSICYSMVALITSIKKGIHHRPESYGVRSH-TEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPM 259 (360)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~ 259 (360)
+..+..+..+++++.........+ +.....+.. .....+.++..++....|+|.|.+......+|+ |||+| ++
T Consensus 155 ~~~~~~~~~l~~~ii~g~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~i 228 (445)
T PRK11357 155 LITIAKIIPFTIVIGLGIFWFKAE-NFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEI----KNPGK-TM 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc-cccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc-cc
Confidence 554433332222222111110111 111000000 111225678888999999999999999999999 99987 78
Q ss_pred chhhhHHHHHHHHHHHHHHhhh
Q 037598 260 WKGVVVAYVIVAFCYLSVGISG 281 (360)
Q Consensus 260 ~~~~~~~~~i~~~~Y~~~g~~g 281 (360)
+|++..+..++.++|++.....
T Consensus 229 P~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 229 PRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876643
No 34
>PRK10836 lysine transporter; Provisional
Probab=99.33 E-value=2.4e-10 Score=112.31 Aligned_cols=245 Identities=14% Similarity=0.111 Sum_probs=142.7
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHh
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLPF-AFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP~-~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
+.+|+.+.++..+..+++++|+|++..|. +.+++|....++..++.++++...+..+.|.....|... .....+++.
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG--g~y~y~~~~ 89 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG--SFATYGQNY 89 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Confidence 35788999999999999999999999985 677788644688889999999999999999966666544 667778888
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCC---chhHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFN---SLKGVSL 180 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~---~l~~~s~ 180 (360)
+||.+|....+. ....... +.+......+. +.....++ .....+..+..+++. ..-..+.+ +...+..
T Consensus 90 ~g~~~gf~~Gw~-~~~~~~~-~~a~~~~a~~~---~~~~~~~~---~~~~~~~~~~~~~~~-~lN~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 90 VEEGFGFALGWN-YWYNWAV-TIAVDLVAAQL---VMSWWFPD---TPGWIWSALFLGVIF-LLNYISVRGFGEAEYWFS 160 (489)
T ss_pred cChHHHHHHHHH-HHHHHHH-HHHHHHHHHHH---HhhhcCCC---CchHHHHHHHHHHHH-HHHHHcchhhhhhHHHHH
Confidence 998887654443 2222221 11111111111 12221111 111122222222211 11222333 3333322
Q ss_pred HHHHHHHHHHHHHHhHh-h--hcCCCCCCcc-ccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCC
Q 037598 181 LAAVMSICYSMVALITS-I--KKGIHHRPES-YGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSK 256 (360)
Q Consensus 181 ~~~~~~~~~~~i~~~~~-~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~ 256 (360)
+..+..+..++++.... . .++.+..+.+ +.......+.++..+..+.....|+|.|.+.+....+|+ |||+|
T Consensus 161 ~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r 236 (489)
T PRK10836 161 LIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPAK 236 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHHH
Confidence 22222222222111111 1 1111100111 110001112345566666777789999999999999999 99987
Q ss_pred CCcchhhhHHHHHHHHHHHHHHhhhhhcc
Q 037598 257 KPMWKGVVVAYVIVAFCYLSVGISGYWAF 285 (360)
Q Consensus 257 ~~~~~~~~~~~~i~~~~Y~~~g~~gy~~f 285 (360)
+++|++..++..+.++|++.........
T Consensus 237 -~iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 237 -NIPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 8999999999999999998865544433
No 35
>PRK15049 L-asparagine permease; Provisional
Probab=99.33 E-value=3.9e-10 Score=110.93 Aligned_cols=289 Identities=13% Similarity=0.038 Sum_probs=161.5
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLPF-AFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~-~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
.+|+.+.++..+..++.++|+|++..|. +++.+|. .+++..++.+++....+..+.|.....|... +..+.+++.+
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG--g~y~y~~~~~ 102 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG--SFVSYAREFL 102 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHh
Confidence 6788999999999999999999988776 6777886 4688888899999999999999866566543 6778899999
Q ss_pred CCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 037598 105 GPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAV 184 (360)
Q Consensus 105 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~ 184 (360)
||++|....+.. .+.............+.... . .+.....+...+.+++.++. -..-.+..+....+.....+
T Consensus 103 G~~~gf~~GW~~-~l~~~~~~~~~~~a~~~~~~----~-~~~~~~~~~~~~~~~~~~l~-~~iN~~gvk~~~~i~~~~~~ 175 (499)
T PRK15049 103 GEKAAYVAGWMY-FINWAMTGIVDITAVALYMH----Y-WGAFGGVPQWVFALAALTIV-GTMNMIGVKWFAEMEFWFAL 175 (499)
T ss_pred CcHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----H-hccCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 998887544433 32222111111111121111 1 11001122222222222221 12222244444444433332
Q ss_pred HHHHHHHHHH---hHhhhcCCCCCCccccc-----cCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCC
Q 037598 185 MSICYSMVAL---ITSIKKGIHHRPESYGV-----RSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSK 256 (360)
Q Consensus 185 ~~~~~~~i~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~ 256 (360)
..+..++.++ ......+.+..+...++ +....+.++.++..++....|+|.|.+.+....+|+ |||+|
T Consensus 176 iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP~r 251 (499)
T PRK15049 176 IKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC----KDPQT 251 (499)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cChhh
Confidence 2222221111 11112121110000010 011223455666777788999999999999999999 99987
Q ss_pred CCcchhhhHHHHHHHHHHHHHHhhhhhccCCC-c---hhh---HhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHH
Q 037598 257 KPMWKGVVVAYVIVAFCYLSVGISGYWAFGQY-V---EDD---VLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDM 329 (360)
Q Consensus 257 ~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~-~---~~~---il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~ 329 (360)
+++|++..++..+.++|+..........+.+ . .++ +.... ..++...+..+..++..+.+.--.++...+.
T Consensus 252 -~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~-g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~ 329 (499)
T PRK15049 252 -MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKL-GVPYIGSIMNIVVLTAALSSLNSGLYCTGRI 329 (499)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999988765443333211 1 111 11222 1233344555555555555554444444444
Q ss_pred H
Q 037598 330 I 330 (360)
Q Consensus 330 ~ 330 (360)
+
T Consensus 330 l 330 (499)
T PRK15049 330 L 330 (499)
T ss_pred H
Confidence 4
No 36
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.32 E-value=2.2e-10 Score=112.04 Aligned_cols=290 Identities=14% Similarity=0.144 Sum_probs=164.7
Q ss_pred CCchHHHHHHHHHhhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCC
Q 037598 28 RKAKWWYSAFHNVTAMVGAGVLGLPFAFS-QLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGP 106 (360)
Q Consensus 28 ~~~s~~~~~~~l~~~~vG~GiL~lP~~f~-~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~ 106 (360)
|+.+.++.+...+++++|+|++.+|.... .+|....++..++.++.....+..+.|...+.|+.. -...+.+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~g-GG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELD-GGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CChhhhHHhHcCc
Confidence 57899999999999999999999988754 556433456678888888888888899866566421 0345559999999
Q ss_pred ccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHH-HHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 037598 107 RFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFI-LIFACLHLVLSQTPNFNSLKGVSLLAAVM 185 (360)
Q Consensus 107 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~-~i~~~i~lpl~~~~~l~~l~~~s~~~~~~ 185 (360)
++|....+. ..+.......++.....+.+..+++.... ..+...+. .+..+..+-....+..+..++++.+..+.
T Consensus 80 ~~gf~~gw~-~w~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ 155 (468)
T TIGR03810 80 FMGFISAWG-YWLSAWLGNVAYATLLFSTLGYFFPIFGG---GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIA 155 (468)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccC---CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 888754443 33333223333433333333333332211 01111111 11111122222235666666666655544
Q ss_pred HHHHHHHHHhHh--hhcC-CCCCCccccc-c-CCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcc
Q 037598 186 SICYSMVALITS--IKKG-IHHRPESYGV-R-SHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMW 260 (360)
Q Consensus 186 ~~~~~~i~~~~~--~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~ 260 (360)
.+..++++++.. ...+ ... +..++. + .......+.++..++....|+|.|.+....+.+|. || +++++
T Consensus 156 ki~~l~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~--~k~ip 228 (468)
T TIGR03810 156 KLVPLFVFIVIGIFAFKGDTFT-NDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARA----EK--RSDVG 228 (468)
T ss_pred HHHHHHHHHHHHHHHhcHhhcC-ccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhc----cC--cccch
Confidence 333222222211 1111 100 000000 0 00012234567788899999999999998888888 76 45788
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhccCCCc----h----hhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHH
Q 037598 261 KGVVVAYVIVAFCYLSVGISGYWAFGQYV----E----DDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMI 330 (360)
Q Consensus 261 ~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~----~----~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 330 (360)
|++..+..++.++|++..+..+...+++. + ..+..+.. .++...+..+..+++.+.+.--.+....+..
T Consensus 229 ~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~ 305 (468)
T TIGR03810 229 KATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIP 305 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876655444211 1 11222222 2344556666666666666555444444443
No 37
>PRK10746 putative transport protein YifK; Provisional
Probab=99.30 E-value=2.5e-10 Score=111.29 Aligned_cols=291 Identities=13% Similarity=0.074 Sum_probs=165.3
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHh
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLP-FAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP-~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
+.+|+.+.++..+..++.++|+|++..| .+.+.+|. ..++..++.+++....+..+.|.....|... ++.+.+++.
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG--g~~~y~~~~ 83 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG--SFAVYAHRY 83 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 3578899999999999999999998865 55777886 4567888888998999999999866566543 788889999
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
+||++|....+ ...+.............+.+++.+.+. .....+..+..++... .-.+..+..+.+.....
T Consensus 84 ~g~~~Gf~~gw-~~~~~~~~~~~~~~~a~~~~l~~~~p~-------~~~~~~~~~~~~~~~~-lN~~gv~~~~~~e~~~~ 154 (461)
T PRK10746 84 MSPFFGYLTAW-SYWFMWMAVGISEITAIGVYVQFWFPE-------MAQWIPALIAVALVAL-ANLAAVRLYGEIEFWFA 154 (461)
T ss_pred hCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCC-------CchHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 99988864443 344433333333333333333333221 2222222222222211 11223333333322222
Q ss_pred HHH---HHHHHH-HHhHh-hhcCCCCC--Ccccccc-CCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCC
Q 037598 184 VMS---ICYSMV-ALITS-IKKGIHHR--PESYGVR-SHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPS 255 (360)
Q Consensus 184 ~~~---~~~~~i-~~~~~-~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~ 255 (360)
... +..+++ .+... ...+..+. +.+...+ ....+.++.++..++....|+|.|.+.+....+|+ |||+
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP~ 230 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA----KNPQ 230 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cChh
Confidence 211 111111 11111 11111110 1111101 11124457788999999999999999999999999 9998
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHhhhhhccCCCch----hh---HhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHH
Q 037598 256 KKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVE----DD---VLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFD 328 (360)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~----~~---il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~ 328 (360)
| +++|++..+...+.++|+............+.. ++ ...+.. .+....+.++...++.+.+.--.++...+
T Consensus 231 k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g-~~~~~~i~~~~il~a~~s~~n~~~~~~sR 308 (461)
T PRK10746 231 V-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIG-ITAAAGIINFVVLTAALSGCNSGMYSCGR 308 (461)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 899999988888888998865443333322111 11 112221 12233344555555555555444444444
Q ss_pred HHHHH
Q 037598 329 MIESY 333 (360)
Q Consensus 329 ~~~~~ 333 (360)
.+...
T Consensus 309 ~l~~~ 313 (461)
T PRK10746 309 MLYAL 313 (461)
T ss_pred HHHHH
Confidence 44443
No 38
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.30 E-value=3.4e-10 Score=110.27 Aligned_cols=237 Identities=12% Similarity=0.067 Sum_probs=144.7
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHh
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLPFA-FSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~-f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
+.+|+.+.++..+..++.++|+|++..|.. .+.+|. ..++..++.+++....+..+.|...+.|... ++.+.+++.
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG--g~y~~~~~~ 85 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG--SFSHFAYKY 85 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 357899999999999999999999888765 556665 5677788888888888999999866566544 677778899
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
+||..|....+ ...+.....+.+.....++.++.+.+. .+...+..++.++... .-....+..+.++....
T Consensus 86 ~g~~~gf~~Gw-~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~i~~~~~~~-lN~~gv~~~~~~~~~~~ 156 (456)
T PRK10238 86 WGSFAGFASGW-NYWVLYVLVAMAELTAVGKYIQFWYPE-------IPTWVSAAVFFVVINA-INLTNVKVFGEMEFWFA 156 (456)
T ss_pred cCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCc-------CcHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 99877765444 344444444444444444444333221 1222222222222111 11224444444444433
Q ss_pred HHHHHHHHHHHh---HhhhcC--CCCCCcccccc-CCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCC
Q 037598 184 VMSICYSMVALI---TSIKKG--IHHRPESYGVR-SHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKK 257 (360)
Q Consensus 184 ~~~~~~~~i~~~---~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~ 257 (360)
+..+..++++++ .....+ .++...+...+ ....+.++.++..+++...|+|.|.+......+|+ |||+|
T Consensus 157 ~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r- 231 (456)
T PRK10238 157 IIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ- 231 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh-
Confidence 333322221111 111111 11101111001 11123456678888889999999999999999999 99987
Q ss_pred CcchhhhHHHHHHHHHHHHHH
Q 037598 258 PMWKGVVVAYVIVAFCYLSVG 278 (360)
Q Consensus 258 ~~~~~~~~~~~i~~~~Y~~~g 278 (360)
+++|++..+.....++|+..-
T Consensus 232 ~iPrAi~~~~~~i~~~y~~~~ 252 (456)
T PRK10238 232 SIPKATNQVIYRILIFYIGSL 252 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 799999888888888887643
No 39
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.29 E-value=6.1e-10 Score=108.56 Aligned_cols=240 Identities=11% Similarity=0.090 Sum_probs=145.1
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHh
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLPFA-FSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~-f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
+.+|+.+.++..+..+++++|+|++.+|.. .+.+|. ..++..++.+++....+..+.|...+.|... +..+.+++.
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G--g~y~y~~~~ 82 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS--SFSRYAQEN 82 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 357889999999999999999999998765 666776 4688888999999999999999866566543 666678999
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
+||.+|....+. ..+.....+.......+.++..+. ++ .....+.+...+ ..-....++.+....+.....
T Consensus 83 ~G~~~gf~~gw~-~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~-l~~~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 83 LGPLAGYITGWT-YCFEILIVAIADVTAFGIYMGVWF----PT---VPHWIWVLSVVL-IICAVNLMSVKVFGELEFWFS 153 (457)
T ss_pred cCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC----CC---CChHHHHHHHHH-HHHHHHHccchhHHHHHHHHH
Confidence 999887754443 333332222222222222222221 11 112222222222 222223345555555544333
Q ss_pred HHHHHHHHHHHh----Hhhh---cCCCCCCccccc-cCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCC
Q 037598 184 VMSICYSMVALI----TSIK---KGIHHRPESYGV-RSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPS 255 (360)
Q Consensus 184 ~~~~~~~~i~~~----~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~ 255 (360)
+..+..+++++. .... +...+.+.+..+ +....+.++.++..++....|+|.|.+......+|+ |||+
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~ 229 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----KDPE 229 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChh
Confidence 322221111111 1111 110110111101 111224456688889999999999999999999999 9998
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHhhh
Q 037598 256 KKPMWKGVVVAYVIVAFCYLSVGISG 281 (360)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~Y~~~g~~g 281 (360)
| +.+|++..+.....++|+......
T Consensus 230 k-~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 230 K-SIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 788999988888888888775443
No 40
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.25 E-value=8.9e-10 Score=107.01 Aligned_cols=238 Identities=12% Similarity=0.072 Sum_probs=145.1
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcC
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFG 105 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G 105 (360)
.+|+.+.++.....++.++|......+..++..|+..-++..++.+++....+..+.|.....|+.. .....+++.+|
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G--g~y~~~~~~~G 82 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG--GGYGFARRAFG 82 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHhC
Confidence 5788999999999999999844456688889999864455666677777777888888866566543 56677899999
Q ss_pred CccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 037598 106 PRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVM 185 (360)
Q Consensus 106 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~ 185 (360)
|++|....+ ...+........+....++++..+++.. ......+++..+ +-+.-.+..+..+++.....+.
T Consensus 83 ~~~gf~~gw-~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------~~~~~~~~~~~~-~~~ln~~g~~~~~~i~~~~~~~ 153 (442)
T TIGR00908 83 PWGGFLAGT-AILIEFAFAPPAIACFIGAYCESLFPVG-------PGWLAALVFYIV-FIGINILGVGEAAKLEFVVTAV 153 (442)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccC-------chhHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHH
Confidence 888774444 4444444445555566666665554321 112222211111 1122223444444444433332
Q ss_pred HHHHHHHHHhHhhhcCCCCCCcc--ccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhh
Q 037598 186 SICYSMVALITSIKKGIHHRPES--YGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGV 263 (360)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~ 263 (360)
.+..+++++.....+..+.+-.. +.......+.++.++..++....|+|.|.+......+|+ |||+| +.+|++
T Consensus 154 ~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iprai 228 (442)
T TIGR00908 154 AIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKR-DIPRGL 228 (442)
T ss_pred HHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-ccCHHH
Confidence 22222111111111100000000 000011123345678888899999999999999999999 99987 789999
Q ss_pred hHHHHHHHHHHHHHHh
Q 037598 264 VVAYVIVAFCYLSVGI 279 (360)
Q Consensus 264 ~~~~~i~~~~Y~~~g~ 279 (360)
..+..++.++|+.+-.
T Consensus 229 ~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 229 IGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888887644
No 41
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.21 E-value=1.4e-09 Score=106.72 Aligned_cols=239 Identities=14% Similarity=0.113 Sum_probs=145.8
Q ss_pred cCCchHHHHHHHHHhhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcC
Q 037598 27 SRKAKWWYSAFHNVTAMVGAGVLGLP-FAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFG 105 (360)
Q Consensus 27 ~~~~s~~~~~~~l~~~~vG~GiL~lP-~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G 105 (360)
+|+.+.++.....++.++|+|++..| .+.+.+|....++..++.+++....+..+.|.....|.. .-.|.+.+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~-gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVV-SGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcC
Confidence 46789999999999999999998765 667777754346678888888999999999986656622 1167888999999
Q ss_pred CccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 037598 106 PRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVM 185 (360)
Q Consensus 106 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~ 185 (360)
|++|....+ ...+.....+.+.....+..+..+ .+ +.....+..+..+ .+-+.-.++.+..++++......
T Consensus 80 ~~~gf~~gw-~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~-~~~~in~~gv~~~~~~~~~~~~~ 150 (478)
T TIGR00913 80 PAFGFAVGW-NYWLQWLIVLPLELVTASMTIQYW----TD---KVNPAVWIAIFYV-FIVIINLFGVKGYGEAEFWFSSI 150 (478)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc----CC---CCCHHHHHHHHHH-HHHHHHHhcchHHHHHHHHHHHH
Confidence 988875443 344433333333333334333322 11 1122222222222 22222334555555555444322
Q ss_pred HHH---HHHHHHhHhhhcCCCC-CCcc---ccccCCccc----hhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCC
Q 037598 186 SIC---YSMVALITSIKKGIHH-RPES---YGVRSHTEV----GKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVP 254 (360)
Q Consensus 186 ~~~---~~~i~~~~~~~~~~~~-~~~~---~~~~~~~~~----~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p 254 (360)
.+. .+++........+.++ .... +..+....+ ..+.++..++....|+|.|.+......+|+ |||
T Consensus 151 ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP 226 (478)
T TIGR00913 151 KILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA----ANP 226 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh----cCh
Confidence 222 1111111111111111 0000 000001111 136778889999999999999999999999 999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHhh
Q 037598 255 SKKPMWKGVVVAYVIVAFCYLSVGIS 280 (360)
Q Consensus 255 ~~~~~~~~~~~~~~i~~~~Y~~~g~~ 280 (360)
+| +++|++..+..++.++|++....
T Consensus 227 ~r-~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 227 RK-SIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 89999999999999999987543
No 42
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.15 E-value=8.2e-10 Score=106.69 Aligned_cols=290 Identities=16% Similarity=0.151 Sum_probs=173.8
Q ss_pred chHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHhhcccccCCcccCChHHHHHHhcCCcc
Q 037598 30 AKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAIT-FYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRF 108 (360)
Q Consensus 30 ~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~-~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~ 108 (360)
.|+++.....++.++|+|++..| .....|.. .++..++.+.+. ......+.|.....|+.. ...+..++.+||++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG--GIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST--THHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC--eeeehhhhcccccc
Confidence 36889999999999999999999 77777764 555555555555 677777778755455443 66788899999988
Q ss_pred ceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccch-hHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q 037598 109 GYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRL-TYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSI 187 (360)
Q Consensus 109 g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~~ 187 (360)
|... .....+........+.....+.+...+.... .+.+. .....+..++..-....+..|..++++.......+
T Consensus 77 g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i 152 (426)
T PF13520_consen 77 GFIV-GWLYWVAYILSLASVASSFASYLLSLFGPDL---NPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKI 152 (426)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTTGGG---TCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhcc-cceeEEEeeccccccccchhhhhhhcccccc---ccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhh
Confidence 8644 4444444444444444444444433332110 01111 11111222222233334466777777666665555
Q ss_pred -HHHHHHHhHhhhcCCCCCCccc--cccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhh
Q 037598 188 -CYSMVALITSIKKGIHHRPESY--GVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVV 264 (360)
Q Consensus 188 -~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 264 (360)
..+++.+...+.....+ .... ...+...+..+.....++....|+|.|.+....+.+|+ || |+.+|++.
T Consensus 153 ~~~l~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~---k~ip~ai~ 224 (426)
T PF13520_consen 153 VIPLLVLIILGIVSFSFS-GFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN---KTIPRAII 224 (426)
T ss_dssp HHHHHHHHHHHHHSTTCC-HHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS---HHHHHHHH
T ss_pred hhhhhhheeEEEeeeccc-ccccccccccccCCccccchhhHHHHHHhhcccccccccccccc----cc---hhheeecc
Confidence 23222322233322211 1110 00011123344457899999999999999999999998 65 47889999
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCchh---h-------HhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHH
Q 037598 265 VAYVIVAFCYLSVGISGYWAFGQYVED---D-------VLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYL 334 (360)
Q Consensus 265 ~~~~i~~~~Y~~~g~~gy~~fG~~~~~---~-------il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~ 334 (360)
.+..++.++|.+.........+++..+ + ..+... .++...+..+...+..+.+....+....+.+...-
T Consensus 225 ~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 225 ISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-ccccccccccccccccccccchhhcchhhcccccc
Confidence 999999999999977766665543221 1 111111 23566666777777887877777777777776665
Q ss_pred hh
Q 037598 335 VQ 336 (360)
Q Consensus 335 ~~ 336 (360)
.+
T Consensus 304 ~d 305 (426)
T PF13520_consen 304 RD 305 (426)
T ss_dssp HT
T ss_pred cc
Confidence 43
No 43
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.13 E-value=4.3e-09 Score=102.22 Aligned_cols=277 Identities=13% Similarity=0.075 Sum_probs=157.3
Q ss_pred HHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCccceeehhHHH
Q 037598 39 NVTAMVGAGVLGLPF-AFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQ 117 (360)
Q Consensus 39 l~~~~vG~GiL~lP~-~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~ 117 (360)
.+++++|+|++..|. +.+++|. ..++..++.+++....+..+.|.....|... ...+.+++.+||++|....+. .
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G--g~y~y~~~~~G~~~gf~~gw~-~ 78 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG--SFSTYADKAIGRWAGYTIGWL-Y 78 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHcChHHHHHHHHH-H
Confidence 467899999998876 6888886 4788899999999999999999866566543 677889999999888754443 3
Q ss_pred HHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHhHh
Q 037598 118 MLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITS 197 (360)
Q Consensus 118 ~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~ 197 (360)
...............+..+ +...+ ......+.+++.++. -+.-..+.+..+.+.....+..+..++++++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~l~~~-~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~ 150 (446)
T PRK10197 79 WWFWVLVIPLEANIAAMIL----HSWVP---GIPIWLFSLVITLAL-TGSNLLSVKNYGEFEFWLALCKVIAILAFIFLG 150 (446)
T ss_pred HHHHHHHHHHHHHHHHHHH----Hhccc---cCcHHHHHHHHHHHH-HHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3322222222222222212 22111 111112222222111 122233444444444444433333222222211
Q ss_pred h--hcCC-CCCCc-c--cccc-CCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhHHHHHH
Q 037598 198 I--KKGI-HHRPE-S--YGVR-SHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIV 270 (360)
Q Consensus 198 ~--~~~~-~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~i~ 270 (360)
+ ..+. +..+. . ...+ ....+.++.++..++....|+|.|.+.+....+|+ |||+| +++|++..+...+
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~i 225 (446)
T PRK10197 151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIWRI 225 (446)
T ss_pred HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHHHH
Confidence 1 1221 11010 0 0000 11124567789999999999999999999999999 99987 7999999999999
Q ss_pred HHHHHHHHhhhhhccCCCc-h-------hhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHHH
Q 037598 271 AFCYLSVGISGYWAFGQYV-E-------DDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESY 333 (360)
Q Consensus 271 ~~~Y~~~g~~gy~~fG~~~-~-------~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~ 333 (360)
.++|++..+.-......+. + ....+... .++...+..+..+++.+.+.--.++...+.+...
T Consensus 226 ~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g-~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ 295 (446)
T PRK10197 226 SIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLN-IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSL 295 (446)
T ss_pred HHHHHHHHHHHheecCcCcccccccCcHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999986655332222111 1 12233332 2344455556566666665555555555444443
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.10 E-value=9.1e-09 Score=100.48 Aligned_cols=282 Identities=15% Similarity=0.196 Sum_probs=166.7
Q ss_pred cccCCchHHH-HHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHh
Q 037598 25 TASRKAKWWY-SAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 25 ~~~~~~s~~~-~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
+++|+.+.++ ......+.++|.|++.+|......+ ....+..++.+.+....+..+.|.....|+.. .+.+..++.
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--G~y~~~~~~ 85 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG--GAYAYAKRA 85 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--Ceeeehhhh
Confidence 3466777788 8888889999999999998887765 22233345555666666677777755455443 567779999
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHH--HHHhhcCCCCCchhHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACL--HLVLSQTPNFNSLKGVSLL 181 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i--~lpl~~~~~l~~l~~~s~~ 181 (360)
+||++|. +......+.......+......+.+..+.+... ...........+..++ .+-+.-.+..+...++...
T Consensus 86 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~ 162 (466)
T COG0531 86 LGPRLGF-LAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--LLSIGPLLIILIALALIALLTLLNLRGIKASAKINSI 162 (466)
T ss_pred cCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9988874 455555555555555555555554444444210 0000102222222222 2223334566666666665
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcch
Q 037598 182 AAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWK 261 (360)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~ 261 (360)
..+..+...+++........... ......+.......+..+..++....++|.|.+......+|+ |||+| +.+|
T Consensus 163 ~~~~~i~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r-~ip~ 236 (466)
T COG0531 163 ITILKIIILLIFIILGLFAFGFS-NGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKR-TIPR 236 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc-ccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCccc-cccH
Confidence 55554443333333322222111 111000000022344578899999999999999999999999 99877 5889
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhccCCC-ch-----hhH---hhcccCchHHHHHHHHHHHHHHHhhh
Q 037598 262 GVVVAYVIVAFCYLSVGISGYWAFGQY-VE-----DDV---LISLRKPAWLIAIANFMVFFHVVGSY 319 (360)
Q Consensus 262 ~~~~~~~i~~~~Y~~~g~~gy~~fG~~-~~-----~~i---l~~~~~~~~~~~~~~~~~~i~~~~s~ 319 (360)
++..+..++.++|++.........+++ .. .+. ..... ..+...+..+...+..+.+.
T Consensus 237 aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~ 302 (466)
T COG0531 237 AIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGG-GNWGAIIIAILALLSLFGSL 302 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcC-ccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888766666542 11 111 11111 13555566666666666665
No 45
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.06 E-value=4.9e-09 Score=100.14 Aligned_cols=297 Identities=17% Similarity=0.163 Sum_probs=199.5
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHh
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVL-GLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL-~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
+.+|+...+...+.-++..+|+|++ +.-.+.+++|....++..++.|.+.+..+..+.|.....|... +|.+.+.+.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG--sF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG--SFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhhhhh
Confidence 4678899999999999999999995 7999999999998889999999999999999999966666432 688999999
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHH--hhcCCCCCchhHHHH-
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLV--LSQTPNFNSLKGVSL- 180 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lp--l~~~~~l~~l~~~s~- 180 (360)
.+|-+|.. +.....+....++..-++..+..++.+.+. ..+...|..++.++++. +.-.|...+..+.-.
T Consensus 119 vdpa~GFa-~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 119 VDPAFGFA-LGWNYWLNWAVTLPLELTAASLVIQYWFPD------TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred cCchHHHH-HHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------CCChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 99878764 444455555555555555555444444322 13556777777666554 445688888885544
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCC-CCCc--cccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCC
Q 037598 181 LAAVMSICYSMVALITSIKKGIH-HRPE--SYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKK 257 (360)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~ 257 (360)
+-++.++.++++.++.... +.+ +++. .+-..+...+.++.++...+-+..|||.|.+.+--...|- +||+|
T Consensus 192 iKV~~ii~Fii~gii~~~G-g~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~nP~K- 265 (541)
T COG0833 192 IKVLTIIGFIILGIIIICG-GGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----ENPRK- 265 (541)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc----CCchh-
Confidence 4444333333333332222 222 2121 1111223446678999999999999999999999999998 99987
Q ss_pred CcchhhhHHHHHHHHHHHHHHhh-hhh-ccCCC----------chhhHhhcccC--chHHHHHHHHHHHHHHHhhhhccc
Q 037598 258 PMWKGVVVAYVIVAFCYLSVGIS-GYW-AFGQY----------VEDDVLISLRK--PAWLIAIANFMVFFHVVGSYQVFA 323 (360)
Q Consensus 258 ~~~~~~~~~~~i~~~~Y~~~g~~-gy~-~fG~~----------~~~~il~~~~~--~~~~~~~~~~~~~i~~~~s~pl~~ 323 (360)
.+||++--...-..++|++.-++ |.. .|.|. ..++....+.+ -..+..+.+...+.+++.+-==.+
T Consensus 266 ~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~l 345 (541)
T COG0833 266 SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGL 345 (541)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccc
Confidence 79999999999999999875432 333 33330 11111111111 123455677777777777766667
Q ss_pred ccHHHHHHHHHhh
Q 037598 324 MPVFDMIESYLVQ 336 (360)
Q Consensus 324 ~p~~~~~~~~~~~ 336 (360)
+...+.+..+-.+
T Consensus 346 YasSR~L~sLA~~ 358 (541)
T COG0833 346 YASSRMLYSLAKQ 358 (541)
T ss_pred hHHHHHHHHHHhc
Confidence 7777777766543
No 46
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.99 E-value=3.1e-09 Score=104.27 Aligned_cols=302 Identities=13% Similarity=0.061 Sum_probs=200.9
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCc-ccCChHHHHHH
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVL-GLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGK-RFDRYPELGEH 102 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL-~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~-~~~sy~~l~~~ 102 (360)
+.+|+.+.+...+.-++.++|+|++ ....+.++.|-..-++..++.+.....++..+.|...+.|.. . ++...+++
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG--s~~~ya~~ 104 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG--SFYTYAYR 104 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc--cceeeeee
Confidence 5688999999999999999999996 578899999988778888889999999999999996667752 2 56666888
Q ss_pred hcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHH-Hhcc-CCcccchhHH--HHHHHHHHHHhhcCCCCCchhHH
Q 037598 103 CFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVE-LLDH-NVENVRLTYF--ILIFACLHLVLSQTPNFNSLKGV 178 (360)
Q Consensus 103 ~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~-~~~~-~~~~~~~~~~--~~i~~~i~lpl~~~~~l~~l~~~ 178 (360)
..||-+|.. +....++.....+.+-....+.+++.+.. .... ..+..+...| ..+..++++.+...+...+.++.
T Consensus 105 ~i~e~~aF~-~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~ 183 (554)
T KOG1286|consen 105 FVGESLAFA-IGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFS 183 (554)
T ss_pred eeCcHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeeh
Confidence 889888764 44445566666666666666666666640 0000 0011111222 22333344455666666777766
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcCCCCCCc-cc------cccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCC
Q 037598 179 SLLAAVMSICYSMVALITSIKKGIHHRPE-SY------GVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTP 251 (360)
Q Consensus 179 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~ 251 (360)
.....++++.-+++..+....-+.+. |. .| ..+....+.++.++..++-+..|+|.|.+.+-...+|-
T Consensus 184 ~~~~kvl~~v~~~Il~iVi~~G~~~~-d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~---- 258 (554)
T KOG1286|consen 184 LAFNKILTAVGFIILAIVIIAGGGPA-DVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA---- 258 (554)
T ss_pred HHHHHHHHHHHHHHhheeeecCCCcC-CcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc----
Confidence 66666655443333222211111221 11 11 11222345568899999999999999999999999999
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHhhhhh--ccCCC-chhhH--------hhcccCchHHHHHHHHHHHHHHHhhhh
Q 037598 252 EVPSKKPMWKGVVVAYVIVAFCYLSVGISGYW--AFGQY-VEDDV--------LISLRKPAWLIAIANFMVFFHVVGSYQ 320 (360)
Q Consensus 252 ~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~--~fG~~-~~~~i--------l~~~~~~~~~~~~~~~~~~i~~~~s~p 320 (360)
|||+| ..|+++..+...+..+|++..+.--+ .|.+. ..++. -.+.+.-.++..+.++..++.++.+--
T Consensus 259 kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n 337 (554)
T KOG1286|consen 259 KNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLN 337 (554)
T ss_pred cCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHH
Confidence 99986 79999999999999999998765332 23220 11111 111111123334788888889999888
Q ss_pred cccccHHHHHHHHHh
Q 037598 321 VFAMPVFDMIESYLV 335 (360)
Q Consensus 321 l~~~p~~~~~~~~~~ 335 (360)
-.++++-+.+...-.
T Consensus 338 ~~~y~~sR~l~amA~ 352 (554)
T KOG1286|consen 338 SSLYAGSRVLYALAK 352 (554)
T ss_pred HHhHHhHHHHHHHHh
Confidence 899999888888754
No 47
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.97 E-value=6.1e-09 Score=86.69 Aligned_cols=210 Identities=16% Similarity=0.201 Sum_probs=144.6
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccc------------cCCcc------
Q 037598 31 KWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEV------------VPGKR------ 92 (360)
Q Consensus 31 s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~------------~~~~~------ 92 (360)
|-........|-++|+|-|++|.+|+.+||.+++.++.+.+..++.+....+++... +.+.+
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 444556677899999999999999999999999999999999999998888775110 00000
Q ss_pred ------------------------------------cCChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccch
Q 037598 93 ------------------------------------FDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSL 136 (360)
Q Consensus 93 ------------------------------------~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l 136 (360)
..+.++++...|. |+|.-+..++++++.+|-...|....-.+.
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffn-kvgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFN-KVGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 0136677888886 588888889999999999998888777776
Q ss_pred HHHHHHhcc--C-------Cc-c----c--------chhHHHHHHH-HHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 037598 137 MKFVELLDH--N-------VE-N----V--------RLTYFILIFA-CLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVA 193 (360)
Q Consensus 137 ~~~~~~~~~--~-------~~-~----~--------~~~~~~~i~~-~i~lpl~~~~~l~~l~~~s~~~~~~~~~~~~i~ 193 (360)
.++.....+ . |- . | -++++.+++. ++++|+.+. ++++.+.+..+....-....+..
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g 250 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILG 250 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccch
Confidence 666543221 1 10 0 1 1233444444 445587776 77777888777777665554444
Q ss_pred HhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccC
Q 037598 194 LITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATI 247 (360)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m 247 (360)
+.....+...+ -. +.+++...+-++-+.++..+|+|.+|...|.....+
T Consensus 251 ~~l~tmqaeed--aa---~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gag 299 (319)
T KOG3832|consen 251 ISLATMQAEED--AA---AAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAG 299 (319)
T ss_pred hhhhhhhhccc--cc---ccCCccccccccccccchhhHHHHhhccCCCCCCCC
Confidence 33322222221 11 223334556678888999999999999999999887
No 48
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.96 E-value=1e-07 Score=93.39 Aligned_cols=250 Identities=11% Similarity=0.026 Sum_probs=140.1
Q ss_pred cccCCchHHHHHHHHHhhh-hhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHH
Q 037598 25 TASRKAKWWYSAFHNVTAM-VGAGVLGLP-FAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEH 102 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~-vG~GiL~lP-~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~ 102 (360)
+.+|+.+.++....-++.+ +|+|+...| .+....|- ..+...++.++.....+..+.|.....|... ...+.+++
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG--G~Y~~~~~ 86 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG--AIYQWSRR 86 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CHHHHHHH
Confidence 4678899999999888875 899998865 55666776 4567777788888888888999866566543 55666888
Q ss_pred hcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhc--cCCccc----c--hhHHHHHHHHHHHHhhcCCCCCc
Q 037598 103 CFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLD--HNVENV----R--LTYFILIFACLHLVLSQTPNFNS 174 (360)
Q Consensus 103 ~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~--~~~~~~----~--~~~~~~i~~~i~lpl~~~~~l~~ 174 (360)
.+||++|....+... +................+..+.+... +..++. . ......+..++..-+.-.+..|.
T Consensus 87 ~~g~~~gf~~gW~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~ 165 (475)
T TIGR03428 87 MGGEVIGWFAGWFMI-IAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEW 165 (475)
T ss_pred HcCccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 899988875544433 33222222222222222222221110 100111 1 11111111111222223345555
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCcccccc-CCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCC
Q 037598 175 LKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVR-SHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEV 253 (360)
Q Consensus 175 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~ 253 (360)
.+++..+..+..+..+++++.........+........ ....+.....+..+.....|+|.|.+....+.+|+ ||
T Consensus 166 ~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~----kn 241 (475)
T TIGR03428 166 MSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET----KN 241 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh----cC
Confidence 66665555544333222222222221111100000000 01111123456667777889999999999999999 99
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHhhhhh
Q 037598 254 PSKKPMWKGVVVAYVIVAFCYLSVGISGYW 283 (360)
Q Consensus 254 p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~ 283 (360)
|+| +.+|++..+..+..++|.++-+....
T Consensus 242 P~r-~iPrai~~s~~i~~~~~~~~~~~~~~ 270 (475)
T TIGR03428 242 PRR-VAPRTILTALSVSALGGGLMILGALM 270 (475)
T ss_pred cch-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987 79999999999887766655544333
No 49
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.92 E-value=2.6e-07 Score=90.82 Aligned_cols=245 Identities=16% Similarity=0.071 Sum_probs=133.4
Q ss_pred cccCCchHHHHHHHHHhhhhh--hhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHH
Q 037598 25 TASRKAKWWYSAFHNVTAMVG--AGVLG-LPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGE 101 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG--~GiL~-lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~ 101 (360)
+.+|+.+.++.....++. +| .|+.. .+.+....|....+...++.+++....+..+.|.....|... +..+-++
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G--g~y~~~~ 85 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG--GQYFWSA 85 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc--cHHHHHH
Confidence 356788999988888874 44 66654 556777888755577788889999999999999866566543 5667788
Q ss_pred HhcCCccceeehhHHHHHHH---hhhhheeeeecccchHHHHHHhccC--CcccchhHHHHHHHHHH--HHhhcCCCCCc
Q 037598 102 HCFGPRFGYWFVMPQQMLVQ---IATDIVYMVTGGKSLMKFVELLDHN--VENVRLTYFILIFACLH--LVLSQTPNFNS 174 (360)
Q Consensus 102 ~~~G~~~g~~~~~~~~~~~~---~g~~~~y~i~~~~~l~~~~~~~~~~--~~~~~~~~~~~i~~~i~--lpl~~~~~l~~ 174 (360)
+++|+++|+....+.-.... ...+.+.....++.+........+. ..+ +......+..++. +-+.-....|.
T Consensus 86 ~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~in~~g~k~ 164 (482)
T TIGR00907 86 KLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIP-TRWHIFGIMIGIHLIHALINSLPTKW 164 (482)
T ss_pred HhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cCchhhhhHHHHHHHHHHHHHhhHhH
Confidence 88887776655443323332 2222222233344444433221111 111 1111112221111 12222234444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhhcCCCC-CCccccc---cCCc---cchhHhhHHHHHHHHHHHhcCCceehhhhccC
Q 037598 175 LKGVSLLAAVMSICYSMVALITSIKKGIHH-RPESYGV---RSHT---EVGKAFDFLNGLGTVAFAFAGHSVVLEIQATI 247 (360)
Q Consensus 175 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~---~~~~---~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m 247 (360)
.+.+.....+..+...+++.+.....+.++ .+.+..+ .+.. .+.+ ..+..++....|+|.|.+......+|+
T Consensus 165 ~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g-~~~~~~~~~~~fsf~G~e~~~~~a~E~ 243 (482)
T TIGR00907 165 LPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGG-FAFLLGLLNPAWSMTGYDGTAHMAEEI 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCc-hhhhhhhhhhHHHhcCcchhhHHHHhc
Confidence 444444433333222221211111111110 0111111 0000 1111 245566666789999999999999999
Q ss_pred CCCCCCCCCCCcchhhhHHHHHHHHHHHHHHh
Q 037598 248 PSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGI 279 (360)
Q Consensus 248 ~~~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g~ 279 (360)
|||+| +++|++..+..+..++|++..+
T Consensus 244 ----knP~r-~iP~Ai~~s~~i~~~~~~~~~l 270 (482)
T TIGR00907 244 ----ENPEV-VGPRAIIGAVAIGIVTGFCFNI 270 (482)
T ss_pred ----CChhh-hcCHHHHHHHHHHHHHHHHHHH
Confidence 99977 8999999988877665544433
No 50
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.80 E-value=2.4e-07 Score=91.38 Aligned_cols=238 Identities=16% Similarity=0.173 Sum_probs=131.0
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHhhcccccCC-cccCChHHHHHHh
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAIT-FYSLWQLVELHEVVPG-KRFDRYPELGEHC 103 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~-~~t~~~l~~~~~~~~~-~~~~sy~~l~~~~ 103 (360)
++||.|.++.+...+++++|.+ .+|.++...|.. +++..++.+++. ...+..+.|.....|+ .. .-.+-.+++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG--G~Y~w~~~~ 79 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG--GIYSWMNKS 79 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cHHHHHHHH
Confidence 3678999999999999999976 568888888874 455555555443 3456677887554553 22 455668889
Q ss_pred cCCccceeehhHHHHHHHhhhhh----------eeeeecccchHHHHHHhccCCcccc-hhHHHHHHHHH--HHHhhcCC
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDI----------VYMVTGGKSLMKFVELLDHNVENVR-LTYFILIFACL--HLVLSQTP 170 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~----------~y~i~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~i--~lpl~~~~ 170 (360)
+||++|....+. .......... ++..+ +....+..+.. ..+ .....++..+. .+-..-.|
T Consensus 80 ~G~~~gf~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~t~vn~~ 152 (496)
T PRK15238 80 VGPKFAFIGTFM-WFASYIIWMVSTASKIWIPFSTFIF-GKDTTQTWHFL-----GLNSTQVVGILAVIWMILVTFVASK 152 (496)
T ss_pred cCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHc-Ccchhhhhhhh-----cccchHHHHHHHHHHHHHHHHHHcc
Confidence 999998743322 2222211110 01111 11111100000 011 11111111111 22334456
Q ss_pred CCCchhHHHHHHHHHHHHH----HHHHHhHhhhcC-CCCCCccc-cc-cCCccch-hHhhHHHHHHHHHHHhcCCceehh
Q 037598 171 NFNSLKGVSLLAAVMSICY----SMVALITSIKKG-IHHRPESY-GV-RSHTEVG-KAFDFLNGLGTVAFAFAGHSVVLE 242 (360)
Q Consensus 171 ~l~~l~~~s~~~~~~~~~~----~~i~~~~~~~~~-~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~fsf~~~~~~~~ 242 (360)
.++..++++.++.+..+.. +++........+ ..+.+.+. .+ +...+.. +..++..++....|+|.|.+....
T Consensus 153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 232 (496)
T PRK15238 153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG 232 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 6777666665544332211 111111111222 11101110 00 0000111 113577778889999999999999
Q ss_pred hhccCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHhh
Q 037598 243 IQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGIS 280 (360)
Q Consensus 243 i~~~m~~~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~ 280 (360)
..+|+ |||+| +.+|++..+...+.++|++..+.
T Consensus 233 ~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 233 LVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred HHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99987 79999999999999999986543
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.79 E-value=3.8e-08 Score=96.58 Aligned_cols=234 Identities=17% Similarity=0.214 Sum_probs=141.9
Q ss_pred HHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCccceeehhHHH
Q 037598 39 NVTAMVGAGVL-GLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQ 117 (360)
Q Consensus 39 l~~~~vG~GiL-~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~ 117 (360)
.++.++|+|++ ..+.+..+.|.....+..++.+++...++..+.|.....+... ++.+.+++.+||+.|....+. .
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G--g~y~y~~~~lg~~~Gf~~gw~-y 82 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG--GFYAYASRGLGPALGFAAGWA-Y 82 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc--chhhhhhhccCCcCCceeeHH-H
Confidence 46788999996 4788999999876788889999999999999999866555433 677889999999999865554 3
Q ss_pred HHHHhhhhheeeeecccchHHH--HHHhccCCcccchhH----HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHH
Q 037598 118 MLVQIATDIVYMVTGGKSLMKF--VELLDHNVENVRLTY----FILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSM 191 (360)
Q Consensus 118 ~~~~~g~~~~y~i~~~~~l~~~--~~~~~~~~~~~~~~~----~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~~~~~~ 191 (360)
.+.............+..++.+ .+.. . .... +..++.+++..+.+ ...+..+.+........+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~~~li 155 (478)
T PF00324_consen 83 WLSYIAAIAAEATAAGSFLQFWGYFPGL----P--STWVWGILIAIIFILLITLLNL-FGVRVSGKIEFILTIIKLIALI 155 (478)
T ss_pred HHHHHHHHHhhhhhhhhhhccccccccc----c--ccccccchhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhhhHhh
Confidence 4444444444444444333333 1111 0 0111 12233323222222 2333333322222222222111
Q ss_pred HHHhHh---hhcCCCCCCc-ccc--------ccC---CccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCC
Q 037598 192 VALITS---IKKGIHHRPE-SYG--------VRS---HTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSK 256 (360)
Q Consensus 192 i~~~~~---~~~~~~~~~~-~~~--------~~~---~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~ 256 (360)
.+++.. ...+..+.+. .+. +++ .....++.++..++....++|.|.+......+|. |||+|
T Consensus 156 ~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k 231 (478)
T PF00324_consen 156 AFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRK 231 (478)
T ss_pred hhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccC----CCchh
Confidence 111111 1111111011 000 000 0112347889999999999999999999999999 99987
Q ss_pred CCcchhhhHHHHHHHHHHHHHHhhhhhccCC
Q 037598 257 KPMWKGVVVAYVIVAFCYLSVGISGYWAFGQ 287 (360)
Q Consensus 257 ~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~ 287 (360)
+++|++..+.....++|++.....-...+.
T Consensus 232 -~IPra~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 232 -TIPRATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred -hhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence 799999999999999999887765555554
No 52
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.62 E-value=4.1e-06 Score=82.70 Aligned_cols=236 Identities=11% Similarity=0.022 Sum_probs=119.0
Q ss_pred cCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH--HHHHHHHhhcccccC-CcccCChHHHHHHh
Q 037598 27 SRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAIT--FYSLWQLVELHEVVP-GKRFDRYPELGEHC 103 (360)
Q Consensus 27 ~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~--~~t~~~l~~~~~~~~-~~~~~sy~~l~~~~ 103 (360)
++|.|.++.++..+.++. ++..+| .+++.|+ +.+...+.+.+. .-.+..+.|.....+ .+. ...+-++++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G--G~y~wv~~a 75 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEG--GIFAWVSNT 75 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC--Ceeeehhhc
Confidence 567999998888888776 556888 5778885 344444444444 336777777744332 211 445558999
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHH--HHHhhcCCCCCchhHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACL--HLVLSQTPNFNSLKGVSLL 181 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i--~lpl~~~~~l~~l~~~s~~ 181 (360)
+||++|.. ..+...+.......+........+..+... .... .+.....++..++ .+.+...+..+...+++.+
T Consensus 76 ~G~~~Gf~-~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~--~~~~-~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i 151 (507)
T TIGR00910 76 LGERFGFA-AIFFGWFQIAIGFIPMIYFILGALSYILKF--PALN-EDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKA 151 (507)
T ss_pred cCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhc-cCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999873 333333322211111111111111111110 0100 1111111121122 2223334455555555444
Q ss_pred HHHHHHHH-HH--HH-HhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCC
Q 037598 182 AAVMSICY-SM--VA-LITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKK 257 (360)
Q Consensus 182 ~~~~~~~~-~~--i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~ 257 (360)
+.+..... .+ ++ .+.....+.+. ..+.......+.....+....+....|+|.|.+......+|+ |||+|
T Consensus 152 ~~~~~~~i~~~ili~l~~~~~~~g~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~----knP~r- 225 (507)
T TIGR00910 152 GFFAGILIPAFILFALAAAYFHGGAPI-AIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINEL----ENPGR- 225 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcc-ccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHc----cCCcc-
Confidence 33211111 11 11 11112222211 111000001111111123344455689999999999999999 99987
Q ss_pred CcchhhhHHHHHHHHHHHHHHh
Q 037598 258 PMWKGVVVAYVIVAFCYLSVGI 279 (360)
Q Consensus 258 ~~~~~~~~~~~i~~~~Y~~~g~ 279 (360)
+++|++..+..++.++|.+..+
T Consensus 226 ~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 226 DYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999876443
No 53
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.51 E-value=1.1e-05 Score=79.03 Aligned_cols=242 Identities=14% Similarity=0.094 Sum_probs=118.3
Q ss_pred CchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHhhcccccCCcccCChHHHHHHhcCCc
Q 037598 29 KAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITF-YSLWQLVELHEVVPGKRFDRYPELGEHCFGPR 107 (360)
Q Consensus 29 ~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~-~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~ 107 (360)
|.+.+...+..+.+++ ++-.+|.. ++.|.. .++..++.+++.. -.+....|.....|++. ...+..++.+||+
T Consensus 2 ~~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G--G~y~~~~~a~G~~ 75 (474)
T TIGR03813 2 KLTVVTLAIMNITAVV--SLRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPEKG--GVFRWVGEAFGAR 75 (474)
T ss_pred cccHHHHHHHHHHHHH--HhhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CceeeHhhhcChh
Confidence 4677776666666665 45555755 678864 4445555554443 46777777755555432 5556689999999
Q ss_pred cceeehhHHHHHHH-hhhhheeeeecccchHHHHHHh-ccCCcccchhHHHHHHHHHH--HHhhcCCCCCchhHHHHHHH
Q 037598 108 FGYWFVMPQQMLVQ-IATDIVYMVTGGKSLMKFVELL-DHNVENVRLTYFILIFACLH--LVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 108 ~g~~~~~~~~~~~~-~g~~~~y~i~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~i~--lpl~~~~~l~~l~~~s~~~~ 183 (360)
+|....+. ..+.. +.... -+...+..+..+.+.. .......+......+..++. +-+.-.++.+..+.++....
T Consensus 76 ~gf~~gw~-~w~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~ 153 (474)
T TIGR03813 76 WGFLAIFM-LWAQVTIWFPT-VLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGG 153 (474)
T ss_pred HHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 88754332 22222 11111 0001111111110000 00000011111112222222 22233455555555544321
Q ss_pred HH-HHH---HHHHHHhHhhhcCCCC-CCccccccCCccc-hhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCC
Q 037598 184 VM-SIC---YSMVALITSIKKGIHH-RPESYGVRSHTEV-GKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKK 257 (360)
Q Consensus 184 ~~-~~~---~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~ 257 (360)
.. .+. .+++........+.+. .+.++. +..+. .++..+..+. ...|+|.|.+......+|+ |||+|
T Consensus 154 ~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~--~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~----knP~r- 225 (474)
T TIGR03813 154 IVGTIIPAAILVILGISYLLTGGESQIPLRWD--DAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDV----DNPDK- 225 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHH--HhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhc----cCccc-
Confidence 11 111 1111111111112111 011111 00111 1233333333 4578999999999999999 99987
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhccC
Q 037598 258 PMWKGVVVAYVIVAFCYLSVGISGYWAFG 286 (360)
Q Consensus 258 ~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG 286 (360)
+.+|++..+..++.++|++..+.-....+
T Consensus 226 ~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 226 NYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 79999999999999999886655443333
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.24 E-value=0.00049 Score=66.93 Aligned_cols=297 Identities=15% Similarity=0.029 Sum_probs=156.4
Q ss_pred CCchHHHHHHHHHhhhhhhhhchHHHHHHh--hChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcC
Q 037598 28 RKAKWWYSAFHNVTAMVGAGVLGLPFAFSQ--LGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFG 105 (360)
Q Consensus 28 ~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~--~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G 105 (360)
|+.++++....-.+..+...-+........ .++-.+++.+++..++...-+-+....-. +.+ .++..+.|..||
T Consensus 12 R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~-r~G---l~~~v~sR~~FG 87 (442)
T TIGR00800 12 RTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGA-KYG---LPFPVLSRASFG 87 (442)
T ss_pred CCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HhC---CCcchhhhhhhh
Confidence 344555555555555554444444333332 23333444444333333322222222211 233 378889999999
Q ss_pred CccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCccc------chhHHHHHHHHHHHHhhcCCCCCchhHHH
Q 037598 106 PRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENV------RLTYFILIFACLHLVLSQTPNFNSLKGVS 179 (360)
Q Consensus 106 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~------~~~~~~~i~~~i~lpl~~~~~l~~l~~~s 179 (360)
.+ |..+..++..+..+|-...-....++.+..+++...+..... ....+.+++.++.+++......+-.++..
T Consensus 88 ~~-Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~ 166 (442)
T TIGR00800 88 IY-GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFE 166 (442)
T ss_pred hh-HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 64 666778888888888877777888888888877654321100 12233445555666655665666555666
Q ss_pred HHHHHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcC-CceehhhhccCCCCCCCCCCCC
Q 037598 180 LLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAG-HSVVLEIQATIPSTPEVPSKKP 258 (360)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~-~~~~~~i~~~m~~~~~~p~~~~ 258 (360)
..+....+..+.+.++.....+-.. +.....+...++.....+..++...+-.+.. -.+.+...+.+ |++++..
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~----~~~~~~~ 241 (442)
T TIGR00800 167 WLAVVPPFAAFGMLIWALSKAHGKG-PLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFG----KSKKTAI 241 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC-ccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc----CCccchH
Confidence 6665543333332222222221111 1110111012244566777777765444333 56789999998 6665544
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhhc----cCCCchh--hHhhcccCchHHHH-----HHHHHHHHHHH-hhhhcccccH
Q 037598 259 MWKGVVVAYVIVAFCYLSVGISGYWA----FGQYVED--DVLISLRKPAWLIA-----IANFMVFFHVV-GSYQVFAMPV 326 (360)
Q Consensus 259 ~~~~~~~~~~i~~~~Y~~~g~~gy~~----fG~~~~~--~il~~~~~~~~~~~-----~~~~~~~i~~~-~s~pl~~~p~ 326 (360)
+....++....+...++|+.+... +|+...+ .....+....+... ...+...+..+ ..--.+.++.
T Consensus 242 --~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~ 319 (442)
T TIGR00800 242 --WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSA 319 (442)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 567777777777777777777665 7754322 33333322211111 11122222222 4677778888
Q ss_pred HHHHHHHHhh
Q 037598 327 FDMIESYLVQ 336 (360)
Q Consensus 327 ~~~~~~~~~~ 336 (360)
...+.+.+.+
T Consensus 320 ~l~l~~l~~~ 329 (442)
T TIGR00800 320 GLDIAALLPK 329 (442)
T ss_pred HHHHHHhCcC
Confidence 7877777754
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.11 E-value=0.00031 Score=63.56 Aligned_cols=219 Identities=16% Similarity=0.173 Sum_probs=127.6
Q ss_pred HHHHHHHhhhhhhhhch---HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCccce
Q 037598 34 YSAFHNVTAMVGAGVLG---LPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGY 110 (360)
Q Consensus 34 ~~~~~l~~~~vG~GiL~---lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~g~ 110 (360)
+-.+-.+++++|+|.-+ +=.-|.+-|+- |..-+++++.+-..++....+...+.+. .+|.|.-++.+||++++
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a---~~y~~~~~~v~~~~~~k 82 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNA---TSYREILKYVSGPKFAK 82 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHhhHHHHH
Confidence 44556677999999866 34556677775 5666677777777777777666442332 39999999999999988
Q ss_pred eehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH-HHH
Q 037598 111 WFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMS-ICY 189 (360)
Q Consensus 111 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~-~~~ 189 (360)
+.|..+.+..+++++..+...+..+++.++- +.+.-.++...++..+.++++.+.+-.+...-+-+. +.+
T Consensus 83 -i~d~~iif~lf~~~vVM~AGags~~~e~~~l--------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l 153 (349)
T COG3949 83 -IIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--------PYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIIL 153 (349)
T ss_pred -HHHHHHHHHHHHHHHHHhccchhHHHHHhCc--------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHH
Confidence 7899999999999998888888777777533 333334555566666666666766554444333222 212
Q ss_pred HHHHHhHhhhcCCCCCCccccccC-CccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhHHHH
Q 037598 190 SMVALITSIKKGIHHRPESYGVRS-HTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYV 268 (360)
Q Consensus 190 ~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~ 268 (360)
..+.....+. ...+ ..+..... ..++.++.+ ..++.+. .+...+.++-++| ++++... +....+-.
T Consensus 154 ~~v~~~~~f~-~~~~-~a~~~~~~~~~W~~~~~~-Y~alNi~----~~~avLv~lg~~~----~~~~~~~--~g~l~ggl 220 (349)
T COG3949 154 VLVTLSFQFT-NLGN-AAQIVLTKQGNWKASAVG-YGALNIL----VAVAVLVPLGGRM----ESRKVSG--IGGLIGGL 220 (349)
T ss_pred HHHHHHHHHh-hccc-hhhhcCCcCCChHHHHHh-hhhHHHH----hHhHhhhhhcccc----cccchhh--hhhhhhhH
Confidence 2222222221 1111 11211111 111212222 1222221 2356677777999 7776654 66665555
Q ss_pred HHHHHHHHHH
Q 037598 269 IVAFCYLSVG 278 (360)
Q Consensus 269 i~~~~Y~~~g 278 (360)
+.+++..+.-
T Consensus 221 Ilgvl~~l~n 230 (349)
T COG3949 221 ILGVLLFLIN 230 (349)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 56
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.03 E-value=0.00015 Score=69.90 Aligned_cols=252 Identities=11% Similarity=0.075 Sum_probs=132.1
Q ss_pred cCCchHHHHH---HHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHH
Q 037598 27 SRKAKWWYSA---FHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEH 102 (360)
Q Consensus 27 ~~~~s~~~~~---~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~ 102 (360)
+|.-+.++.. |.+++... |+ -++.+.....|...-.-..++.+..+...+.-|.|.+...|.... -|.- +..
T Consensus 47 ~R~fs~~s~fg~sFs~~g~~~--~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGg-Ly~w-aa~ 122 (550)
T KOG1289|consen 47 KREFSLFSIFGISFSLMGLLP--GIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGG-LYFW-AAV 122 (550)
T ss_pred hhhhhHHHHHHHHHHHhcchh--hhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCc-HHHH-HHH
Confidence 4555554433 33333333 22 235555555665443444666677777778888887665653220 2333 334
Q ss_pred hcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhc--cCCcccchhHHHHHHHHHHHHhhcCC--CCCchhHH
Q 037598 103 CFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLD--HNVENVRLTYFILIFACLHLVLSQTP--NFNSLKGV 178 (360)
Q Consensus 103 ~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~i~lpl~~~~--~l~~l~~~ 178 (360)
.-+||+++++.++.-..+.++-...........-+.++.... +.....++.....+..++.+..+++. ..+-++++
T Consensus 123 lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I 202 (550)
T KOG1289|consen 123 LAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARI 202 (550)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHH
Confidence 447888887666665555555444443333333222222211 11111222333334444433333332 33567777
Q ss_pred HHHHHHHHHHHHHHHHhHhhh--cCC---CCCCccccc--cCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCC
Q 037598 179 SLLAAVMSICYSMVALITSIK--KGI---HHRPESYGV--RSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTP 251 (360)
Q Consensus 179 s~~~~~~~~~~~~i~~~~~~~--~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~ 251 (360)
+.+++...+..+++.++.... .+. .++..-++. +....+..-+.+.-++-.-.+.+.|.+....+.+|.
T Consensus 203 ~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~---- 278 (550)
T KOG1289|consen 203 NSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEET---- 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHh----
Confidence 777776655544433332221 111 111111111 111112234456667777888999999999999999
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHhhhhhccCC
Q 037598 252 EVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQ 287 (360)
Q Consensus 252 ~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~ 287 (360)
||+++ +.+|++..+..+..++=.++-+.-...-++
T Consensus 279 ~nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 279 KNASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred cchhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99987 689999988888777655544444444453
No 57
>PRK11375 allantoin permease; Provisional
Probab=97.82 E-value=0.019 Score=56.45 Aligned_cols=234 Identities=12% Similarity=0.058 Sum_probs=122.6
Q ss_pred CChHHHHHHhcCCccceeehhHHHH-HHHhhhhheeeeecccchHHHHHHhccCC---------cccc--hhHHHHHHHH
Q 037598 94 DRYPELGEHCFGPRFGYWFVMPQQM-LVQIATDIVYMVTGGKSLMKFVELLDHNV---------ENVR--LTYFILIFAC 161 (360)
Q Consensus 94 ~sy~~l~~~~~G~~~g~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~~~~---------~~~~--~~~~~~i~~~ 161 (360)
.++.-++|..||.+ |..+..+... +..++--..-....++.+..++....+.. ...+ .....+++.+
T Consensus 89 l~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 167 (484)
T PRK11375 89 VPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL 167 (484)
T ss_pred CChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence 48899999999975 5445555442 34444444444556666666655433110 0111 1222334445
Q ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHhHhhhc-CCCCCCcccccc-CCccchhHhhHHHHHHHHHHHhc-CCc
Q 037598 162 LHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKK-GIHHRPESYGVR-SHTEVGKAFDFLNGLGTVAFAFA-GHS 238 (360)
Q Consensus 162 i~lpl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~-~~~ 238 (360)
+..++.. ...+.++++...+.......++...+..+.. +..+ -.+.... ..........+..++...+-++. ...
T Consensus 168 l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~ 245 (484)
T PRK11375 168 VNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGP-IFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAV 245 (484)
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-hhccCcccccCCcchHHHHHHHHHHHHHHHHHHHc
Confidence 5566654 4667777777666654433333222222222 2111 1111100 01112224555555555444555 355
Q ss_pred eehhhhccCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHhhh----hhccCCCch--hhHhhcccCchHHHHHHHHHHH
Q 037598 239 VVLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGISG----YWAFGQYVE--DDVLISLRKPAWLIAIANFMVF 312 (360)
Q Consensus 239 ~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~g----y~~fG~~~~--~~il~~~~~~~~~~~~~~~~~~ 312 (360)
+.|...+.. |++++.. +...++..+...+...+|+.. ...||+... .+++..+. +.+....+.+..+
T Consensus 246 ~~~D~tRy~----k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~-~~~~~~~a~l~~v 318 (484)
T PRK11375 246 SASDFTQNA----HSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWD-SLFASFFAVLVIL 318 (484)
T ss_pred cccchhccc----CChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhc-chHHHHHHHHHHH
Confidence 888999988 7765533 555556666555554444432 345554332 23444442 2344445556667
Q ss_pred HHHHhhh-hcccccHHHHHHHHHhhc
Q 037598 313 FHVVGSY-QVFAMPVFDMIESYLVQH 337 (360)
Q Consensus 313 i~~~~s~-pl~~~p~~~~~~~~~~~~ 337 (360)
++.+.+- .-+.++.-..+.+.+++.
T Consensus 319 ~a~~~tN~~~N~ys~~~~l~~l~pk~ 344 (484)
T PRK11375 319 MTTISTNATGNIIPAGYQIAALAPTK 344 (484)
T ss_pred HHHHHHHHHhhcccHHHHHHHhCcCc
Confidence 7777774 468899999898888654
No 58
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.72 E-value=0.0082 Score=59.16 Aligned_cols=154 Identities=17% Similarity=0.138 Sum_probs=100.3
Q ss_pred ccCCchHHHHHHHHHhhhhh-hhhchHHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHhhcccccCCcccCChHHHHH
Q 037598 26 ASRKAKWWYSAFHNVTAMVG-AGVLGLPFAFSQLGWGAGFAAIF---GSWAITFYSLWQLVELHEVVPGKRFDRYPELGE 101 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG-~GiL~lP~~f~~~G~~~g~i~ll---~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~ 101 (360)
..|+.+.+-..+....+..+ .-.+++|....+.|+..-.+.+. .......+....+.+..+ ..+ ..|.+|.-+
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~-~~~--~~T~~d~l~ 112 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK-ARG--ATTIPDFLE 112 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC--CccHHHHHH
Confidence 35677777777777777776 67789999999999864333333 222223333333333331 222 459999999
Q ss_pred HhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHH
Q 037598 102 HCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLL 181 (360)
Q Consensus 102 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~ 181 (360)
+-||++..+.+..+...+..+..+..-+...+..++..+. .+...-..+..+++...+..-.+++..+...+
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i 184 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYVTGILIGALIVALYTFLGGLRAVVWTDFI 184 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 9999556677777777777777777777777766644432 23444455566777777888888888888887
Q ss_pred HHHHHHHHH
Q 037598 182 AAVMSICYS 190 (360)
Q Consensus 182 ~~~~~~~~~ 190 (360)
.-......+
T Consensus 185 qg~im~i~~ 193 (493)
T COG0591 185 QGLIMLIAL 193 (493)
T ss_pred HHHHHHHHH
Confidence 766544433
No 59
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.0072 Score=57.80 Aligned_cols=218 Identities=15% Similarity=0.102 Sum_probs=132.5
Q ss_pred hHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCch
Q 037598 96 YPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSL 175 (360)
Q Consensus 96 y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l 175 (360)
--.+++..||. +|.++..+.+.+.+.|....-.+..++... ..++.+..++.++..+++...+.. ..+.+
T Consensus 83 qmi~sR~~fG~-~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~--------~~~~~~~~~~ili~g~l~~l~~if-G~r~l 152 (442)
T COG1457 83 QMILSRYPFGV-KGSILPSLLNGITLIGWFGVNVILSGIAIG--------SGTGLPVWAGILIIGVLMTLVTIF-GYRAL 152 (442)
T ss_pred hheeecccccc-hhHHHHHHHHHHHHhhHHHHHHHHhccccc--------cCCCCcHHHHHHHHHHHHHHHHHH-hHHHH
Confidence 34568889996 567788888889898887777777776511 112345667777777777776666 55555
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhh-cCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCC-ceehhhhccCCCCCCC
Q 037598 176 KGVSLLAAVMSICYSMVALITSIK-KGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGH-SVVLEIQATIPSTPEV 253 (360)
Q Consensus 176 ~~~s~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~-~~~~~i~~~m~~~~~~ 253 (360)
+.++..+....+..+....+..+. ++..+ ..+ ...++++.++..+++...-.+... .....+.+.+ ++
T Consensus 153 ~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~--~~~----~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~----~~ 222 (442)
T COG1457 153 HKLERIAVPLLLLLFLYLLALLFRSKGGLD--ALW----VKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYA----PS 222 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccc--eee----ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc----CC
Confidence 555555555444433333333332 22111 111 122666777777777766555553 4557777777 44
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHhhhhhccCCCc-hhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Q 037598 254 PSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYV-EDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIES 332 (360)
Q Consensus 254 p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~-~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 332 (360)
|+.++.-.....+......+-.+.|.....+-|+.. ...+...+.. .-..+.+...++.+.+--..+++..-.+.+
T Consensus 223 ~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~ 299 (442)
T COG1457 223 PTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFAN 299 (442)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 442122234445555666666677777777777755 3333444421 445667777788888888888888777777
Q ss_pred HHhh
Q 037598 333 YLVQ 336 (360)
Q Consensus 333 ~~~~ 336 (360)
...+
T Consensus 300 i~~~ 303 (442)
T COG1457 300 IIPK 303 (442)
T ss_pred hhhh
Confidence 7764
No 60
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.61 E-value=0.013 Score=57.54 Aligned_cols=155 Identities=10% Similarity=0.154 Sum_probs=96.1
Q ss_pred cccCCchHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHH-HHHHHHHHH----HhhcccccCCcccCChHH
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSW-AITFYSLWQ----LVELHEVVPGKRFDRYPE 98 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~-~~~~~t~~~----l~~~~~~~~~~~~~sy~~ 98 (360)
...|+.+++.....+..+.+|++. ++.|-...+.|+. .......+ ...+.+... +.+..+ +.+ ..|.+|
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~T~~e 111 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLG--WVLLAMIQVPTGYFVLGVLGKKFAIISR-KYN--AITIND 111 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC--CccHHH
Confidence 346889999999999999998866 5788888888863 11111111 111111111 212112 223 359999
Q ss_pred HHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHH
Q 037598 99 LGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGV 178 (360)
Q Consensus 99 l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~ 178 (360)
.-++.||++..+++..+...+..++...+-+...+..++.++ +.+....+++..++++..+....++...+.
T Consensus 112 ~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GG~~av~~t 183 (471)
T TIGR02119 112 VLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT--------GLSYLTALFIFSSSVLIYTTFGGFRAVALT 183 (471)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999976656566665555555554444444444444442 234556666777778888889999999999
Q ss_pred HHHHHHHHHHHHHH
Q 037598 179 SLLAAVMSICYSMV 192 (360)
Q Consensus 179 s~~~~~~~~~~~~i 192 (360)
..+..+..+...++
T Consensus 184 d~iQ~~v~~~~~~~ 197 (471)
T TIGR02119 184 DAIQGIVMFTGTTI 197 (471)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887755543333
No 61
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.53 E-value=0.02 Score=56.35 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=91.5
Q ss_pred cccCCchHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHH--HHHHHHH-HHHHHHHhhcccccCCcccCChHHHH
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAI--FGSWAIT-FYSLWQLVELHEVVPGKRFDRYPELG 100 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~l--l~~~~~~-~~t~~~l~~~~~~~~~~~~~sy~~l~ 100 (360)
...|+.+++...+.+..+.+|++. ++.|....+.|+..-.... ...+.+. .+-+..+.+..+ +.+ ..|..|+-
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~--~~T~~e~l 114 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILAR-KYN--AVTLNDML 114 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC--CccHHHHH
Confidence 346788999999999888887744 6788877777864111111 0111111 111222222222 222 35999999
Q ss_pred HHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHH
Q 037598 101 EHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSL 180 (360)
Q Consensus 101 ~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~ 180 (360)
++.||++..+.+..+...+..+.....-+...+..++.+. +.+....+++..++++..+....++...+...
T Consensus 115 ~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~ 186 (483)
T PRK09442 115 RARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT--------GISYETGLLIFGITVALYTAFGGFRAVVLTDA 186 (483)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999976555444443444333333333444444444443 13455566677777788899999999998888
Q ss_pred HHHHHHHHHHH
Q 037598 181 LAAVMSICYSM 191 (360)
Q Consensus 181 ~~~~~~~~~~~ 191 (360)
+..+..+...+
T Consensus 187 iQ~~i~~~~~~ 197 (483)
T PRK09442 187 LQGIVMLVGTV 197 (483)
T ss_pred HHHHHHHHHHH
Confidence 88775544433
No 62
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.45 E-value=0.014 Score=56.16 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=96.0
Q ss_pred cCCchHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcC
Q 037598 27 SRKAKWWYSAFHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFG 105 (360)
Q Consensus 27 ~~~~s~~~~~~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G 105 (360)
.|+.+++...+.+..+.+|++. ++.|....+.|+. +....+............+.+..+ +.+ ..|..|..++-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFI-NNG--AYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HcC--CCchhHHHHHHhC
Confidence 4678889999999888888755 6789888888864 222222222223333444444332 222 3599999999999
Q ss_pred CccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 037598 106 PRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVM 185 (360)
Q Consensus 106 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~ 185 (360)
++..+.+..+...+..+.....-+...+..++.+.+ .+.....++..+++...+....++...+...+..+.
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 765665554544555555555555555555554431 344555666667777788888999998888888775
Q ss_pred HHHH
Q 037598 186 SICY 189 (360)
Q Consensus 186 ~~~~ 189 (360)
.+..
T Consensus 150 ~~~~ 153 (407)
T TIGR00813 150 MILG 153 (407)
T ss_pred HHHH
Confidence 4443
No 63
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.28 E-value=0.097 Score=49.95 Aligned_cols=219 Identities=13% Similarity=0.074 Sum_probs=125.1
Q ss_pred CChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCC
Q 037598 94 DRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFN 173 (360)
Q Consensus 94 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~ 173 (360)
.++..++|..||.+ |..+..+...+..+|--..-....++.+..+.+...+.. +...+..+..++..+.+.. ..+
T Consensus 58 l~~~v~sR~~FG~~-Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~---~~~~~~~i~~~l~~~~~~~-G~~ 132 (386)
T TIGR02358 58 LSAMGSLKLSLGSK-GSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEE---SPMLWILIVGILVTLWLLS-GPL 132 (386)
T ss_pred cCHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHHHHHH-HHH
Confidence 37899999999964 666777777777777666666677888888876543321 1223444444445555543 667
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHH-hcCCceehhhhccCCCCCC
Q 037598 174 SLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFA-FAGHSVVLEIQATIPSTPE 252 (360)
Q Consensus 174 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs-f~~~~~~~~i~~~m~~~~~ 252 (360)
.++++..++........+...+....+...+ + ... + . .+ ..+..++....-. -......++..+.. |
T Consensus 133 ~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~-~~~-~-~-~~---~s~~~~~~~~~~~~~swa~~~~DysRy~----k 200 (386)
T TIGR02358 133 AFVWLNNWSVWLLLIATLWLLVVVFSKADLS-E-LWN-R-A-GD---MSFAVAVELVIAMPLSWLPLIADYTRFA----R 200 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchh-h-hcC-C-C-CC---ccHHHHHHHHHHHHHHHHHHccchhhhc----C
Confidence 7777777776654443333333222221111 1 111 1 1 11 2333333332211 11223478888877 6
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Q 037598 253 VPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIES 332 (360)
Q Consensus 253 ~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 332 (360)
+|++ ..+....+..+...+-.++|.......++....++.... +.. ..+-+...++.+.+-..+.++.-..+.+
T Consensus 201 ~~~~--~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~---g~~-~~~~~~~~l~~~~~n~~N~ys~~l~l~~ 274 (386)
T TIGR02358 201 NPRH--VFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGA---GLG-IPALLIILLSTVTTTFMDIYSAAISTGN 274 (386)
T ss_pred CCcc--eehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc---cHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5544 336777788888888888888777766654222333222 111 2344555667777778888888888888
Q ss_pred HHh
Q 037598 333 YLV 335 (360)
Q Consensus 333 ~~~ 335 (360)
.++
T Consensus 275 l~~ 277 (386)
T TIGR02358 275 LLP 277 (386)
T ss_pred HHH
Confidence 774
No 64
>PRK12488 acetate permease; Provisional
Probab=97.26 E-value=0.022 Score=56.97 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=94.2
Q ss_pred ccCCchHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHH-HHHHhhcccccCCcccCChHHHHHHh
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSWAITFYS-LWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~~~~~~t-~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
..|+.+++...+.+..+.++++. ++.|......|+. +....+. ..+.+.- ..++.+-.+ +.+ ..|.+|.-++-
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~~lr-~~g--~~T~~d~l~~R 139 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYALG-VLAGWPIILFLIAERLR-NLG--KYTFADVVSYR 139 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHHH-HHHHHHHHHHHHHHHHH-HCC--CcchHHHHHHH
Confidence 46789999999999999888865 6799888888874 3222221 1222211 222332222 222 35999999988
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
||.+..+.+..+...+..+.....-+...+..++.++ .++....+++..+++...+..-.++...+...+..
T Consensus 140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~--------gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T PRK12488 140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF--------GISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKA 211 (549)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 9855556555554444444444433334443344332 13455556677777888888999999999998887
Q ss_pred HHHHHHHH
Q 037598 184 VMSICYSM 191 (360)
Q Consensus 184 ~~~~~~~~ 191 (360)
+..+...+
T Consensus 212 ~im~~~~i 219 (549)
T PRK12488 212 VLLLSGTS 219 (549)
T ss_pred HHHHHHHH
Confidence 65554433
No 65
>PRK09395 actP acetate permease; Provisional
Probab=97.01 E-value=0.051 Score=54.46 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=89.5
Q ss_pred ccCCchHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
..|+.+++...+.+..+.++++. ++.|-...+.|+. +....+...+........+.+-.+ +.+ ..|+.|..++-|
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~-~~~~~~~~~~g~~~~~~~~~~~~r-~~g--~~T~~d~l~~Ry 142 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYD-GLIYSIGFLVGWPIILFLIAERLR-NLG--KYTFADVASYRL 142 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHh-hCC--CccHHHHHHHHc
Confidence 46788999999999988888755 6899888888874 222222211111112222333222 222 359999999999
Q ss_pred CCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 037598 105 GPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAV 184 (360)
Q Consensus 105 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~ 184 (360)
|++..+.+..+...+..+.....-+...+..++.+. .++....+++..+++...+..-.++...+...+..+
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~--------gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF--------GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 865445444443333333332222223333333332 245566677777788888888899998888887766
Q ss_pred HHHHH
Q 037598 185 MSICY 189 (360)
Q Consensus 185 ~~~~~ 189 (360)
..+..
T Consensus 215 im~~g 219 (551)
T PRK09395 215 LLLSG 219 (551)
T ss_pred HHHHH
Confidence 54443
No 66
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.99 E-value=0.0095 Score=55.20 Aligned_cols=119 Identities=14% Similarity=0.076 Sum_probs=80.6
Q ss_pred CCCCCCCCCCcccccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhc-ccccCCc
Q 037598 13 TQGKDLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVEL-HEVVPGK 91 (360)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~-~~~~~~~ 91 (360)
+++.+.++.+++.+.-..+.+...-+=..++-|+|-+.=|..-.+-||+++.+.+++-+++..---....-. ..++.|+
T Consensus 35 ~~~TPA~~~~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~ 114 (376)
T PF02554_consen 35 SRPTPAHTMNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGK 114 (376)
T ss_pred CCCCCeeECCCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCc
Confidence 334444444554445556777888888999999999999999999999999988888666555444444333 2234444
Q ss_pred ccCChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccc
Q 037598 92 RFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKS 135 (360)
Q Consensus 92 ~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~ 135 (360)
|.+|++++..||+. +.+..+...+.+.....++....++.
T Consensus 115 ---Si~~i~~~~lG~~~-~~lf~~f~~~~lilV~avF~~v~a~~ 154 (376)
T PF02554_consen 115 ---SIGEIAGKYLGKRA-KKLFLIFIFFLLILVIAVFADVVANT 154 (376)
T ss_pred ---cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999765 44565656665655555554444433
No 67
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.94 E-value=0.065 Score=53.65 Aligned_cols=151 Identities=14% Similarity=0.151 Sum_probs=89.3
Q ss_pred ccCCchHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHhhcccccCCcccCChHHHHHHh
Q 037598 26 ASRKAKWWYSAFHNVTAMVGA-GVLGLPFAFSQLGWGAGFAAIFGSWAITF-YSLWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~-GiL~lP~~f~~~G~~~g~i~ll~~~~~~~-~t~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
..|+.+++...+.+..+.+++ ..++.|-.....|+. +....+. ..+.+ ....++.+-.+ ..+ ..|..|..++-
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lr-r~g--~~T~~d~l~~R 139 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAERLR-NLG--RYTFADVASYR 139 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHH-HcC--CccHHHHHHHH
Confidence 467888888888888887775 557899888888874 3322221 11221 22233333222 223 35999999988
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
||.|..+.+..+...+..+.....-+...+..++.++ + .+...-+++..+++...+....++...+...+..
T Consensus 140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~----g----i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T TIGR02711 140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF----G----LNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKA 211 (549)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C----CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9865545444443444333333333333333333332 1 3445556677777778888889999888888887
Q ss_pred HHHHHH
Q 037598 184 VMSICY 189 (360)
Q Consensus 184 ~~~~~~ 189 (360)
+..+..
T Consensus 212 ~im~~g 217 (549)
T TIGR02711 212 VLLLFG 217 (549)
T ss_pred HHHHHH
Confidence 655443
No 68
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=96.88 E-value=0.029 Score=53.10 Aligned_cols=268 Identities=14% Similarity=0.145 Sum_probs=127.7
Q ss_pred HHHHhhhhhhhhchHHHHH-HhhC--hhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCccceeeh
Q 037598 37 FHNVTAMVGAGVLGLPFAF-SQLG--WGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFV 113 (360)
Q Consensus 37 ~~l~~~~vG~GiL~lP~~f-~~~G--~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~ 113 (360)
+.+....+|+|.|-.|-.. .++| |..+.+.+++.+...-..+.+ .-.+.+. +|.++.++ +||+.+..+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~gG---~~~~l~~~-~g~~f~~lf~ 73 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVGG---GYDSLSAR-IGKVFGILFT 73 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecCC---CHHHHHHH-hChHHHHHHH
Confidence 4567788999999987553 4454 455566666665555444443 2123332 78888888 5788877543
Q ss_pred hHHHHHHHhhh--------hheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 037598 114 MPQQMLVQIAT--------DIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVM 185 (360)
Q Consensus 114 ~~~~~~~~~g~--------~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~ 185 (360)
+.. ..++|- .++|... +.+++ ++. .......++.++.+-+++.=+++.-+....++.+.
T Consensus 74 ~~~--~l~iGP~~aiPRtaa~s~e~~----i~p~~----~~~---~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~L 140 (378)
T TIGR00796 74 VIL--YLTIGPLFAIPRTATVSFEMG----IAPLL----HSP---TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFL 140 (378)
T ss_pred HHH--HHHHHhchhhhHHHHHHHHHH----HHhcc----Ccc---cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHH
Confidence 322 222222 1222211 22222 111 01122233444444443333444445555555554
Q ss_pred HHHH---HHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhc-------CCceehhhhc-cCCCCCCCC
Q 037598 186 SICY---SMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFA-------GHSVVLEIQA-TIPSTPEVP 254 (360)
Q Consensus 186 ~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~-------~~~~~~~i~~-~m~~~~~~p 254 (360)
+-.. +.++++..+.++.. +.... ...... -..+.+++-...+.++ +...+-.+.+ |+ |||
T Consensus 141 TP~lLi~l~~lii~g~~~p~g--~~~~~--~~~~~~-~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~----~~~ 211 (378)
T TIGR00796 141 TPALLVTLLALIIKALLWPAG--PILAA--SGAYAS-QQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGV----TKP 211 (378)
T ss_pred HHHHHHHHHHHHHHHHHcCCC--CcCCc--cccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCH
Confidence 4332 22333334443221 11100 000000 0234455555555555 5666666666 78 777
Q ss_pred CCCCcchhhhHHH---HHHHHHHHHHHhhhhhccC---CC-chhhHhhccc---CchHHHHHHHHHHHHHHHhhhhcccc
Q 037598 255 SKKPMWKGVVVAY---VIVAFCYLSVGISGYWAFG---QY-VEDDVLISLR---KPAWLIAIANFMVFFHVVGSYQVFAM 324 (360)
Q Consensus 255 ~~~~~~~~~~~~~---~i~~~~Y~~~g~~gy~~fG---~~-~~~~il~~~~---~~~~~~~~~~~~~~i~~~~s~pl~~~ 324 (360)
++ ..++.+..+. .....+|.-.+..|...-+ +. ..+.++.+.. -.++...+..+...++++++---...
T Consensus 212 ~~-~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~ 290 (378)
T TIGR00796 212 KK-ITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTT 290 (378)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 3455655555 3344445555555544322 21 2334444332 12334445556666666666655555
Q ss_pred cHHHHHHHHHh
Q 037598 325 PVFDMIESYLV 335 (360)
Q Consensus 325 p~~~~~~~~~~ 335 (360)
.+.+.+++...
T Consensus 291 ~~a~~f~~~~~ 301 (378)
T TIGR00796 291 ACSEYFHKLVP 301 (378)
T ss_pred HHHHHHHHhcC
Confidence 56666666643
No 69
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.71 E-value=0.017 Score=55.29 Aligned_cols=146 Identities=10% Similarity=0.039 Sum_probs=75.4
Q ss_pred CCchHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhc---ccccCCcccCCh-----HH
Q 037598 28 RKAKWWYSAFHNVTAMVGAG-VLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVEL---HEVVPGKRFDRY-----PE 98 (360)
Q Consensus 28 ~~~s~~~~~~~l~~~~vG~G-iL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~---~~~~~~~~~~sy-----~~ 98 (360)
++.|.+|+.+..+.+.+|+| ++++|.+....| ..++..+-+.+++..-+.+.-... .++++++ .+| ..
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~--g~~~GGP~yy 121 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDAD--GVFRGGPMYY 121 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCC--CCEecChHHH
Confidence 34899999999999999998 999999987777 345333333333333332222222 1112222 136 77
Q ss_pred HHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHH
Q 037598 99 LGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGV 178 (360)
Q Consensus 99 l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~ 178 (360)
+-+...||+.|.. ..++ .+..++.. -..-.+.+.+..+... +.+.. ...+..++..-+.....++.+..+
T Consensus 122 i~~gl~~k~lg~l-fa~~-~i~~f~~~---~~~Q~nsi~~~~~~~~----~~~~~-v~~i~l~~l~~~vi~GGik~Ia~v 191 (425)
T TIGR00835 122 IKKGLGMRWLAVL-FAVF-LIASFGIG---NMVQANAIASALSNAF----NVPKL-VTGIVLTVLTALIIFGGLKRIAKI 191 (425)
T ss_pred HHHHhCccHHHHH-HHHH-HHHHHhhh---HHHHHHHHHHHHHHHc----CCcHH-HHHHHHHHHHHHHHhcCchHHHHH
Confidence 8777777544432 2222 22222211 1122233333333221 12222 222333333334455688888877
Q ss_pred HHHHHHHH
Q 037598 179 SLLAAVMS 186 (360)
Q Consensus 179 s~~~~~~~ 186 (360)
+...+-++
T Consensus 192 ~~~lvP~m 199 (425)
T TIGR00835 192 SSVVVPFM 199 (425)
T ss_pred HHHHHHHH
Confidence 77666543
No 70
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.64 E-value=0.73 Score=44.69 Aligned_cols=236 Identities=11% Similarity=0.112 Sum_probs=120.9
Q ss_pred cCChHHHHHHhcCCcccee--ehhHHHHHHHhhhhheeeeecccchHHHHHHhccC----C-----cccchhHHH--HHH
Q 037598 93 FDRYPELGEHCFGPRFGYW--FVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHN----V-----ENVRLTYFI--LIF 159 (360)
Q Consensus 93 ~~sy~~l~~~~~G~~~g~~--~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~----~-----~~~~~~~~~--~i~ 159 (360)
..+|+.+.+.-||-+.+++ +....+.+..+|... -..+..+..++....+. . ...+...++ +++
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~if 178 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIF 178 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHH
Confidence 3689999999998432221 233333444455433 23444455555444321 0 011222222 112
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCcccccc--CCccchhHhhHHHHHHHHHHHhcC-
Q 037598 160 ACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVR--SHTEVGKAFDFLNGLGTVAFAFAG- 236 (360)
Q Consensus 160 ~~i~lpl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fsf~~- 236 (360)
=++. .++..+..++++++...+-.....++.-..+....+..-.+... ..+ ....+..++.+..+....+-.|..
T Consensus 179 W~l~-~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~-~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl 256 (497)
T COG1953 179 WVLQ-LLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILG-ELPAGTVSGSNSSWAFLAGIAAWVGFWATL 256 (497)
T ss_pred HHHH-HHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccc-cCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 2222 34555688888888777766555544433333333221100011 111 112233344555555444433333
Q ss_pred CceehhhhccCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHh----hhhhccCCCc--hhhHhhcccCchHHHHHHHHH
Q 037598 237 HSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGI----SGYWAFGQYV--EDDVLISLRKPAWLIAIANFM 310 (360)
Q Consensus 237 ~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g~----~gy~~fG~~~--~~~il~~~~~~~~~~~~~~~~ 310 (360)
.-|.|..-+.- |+|+... +.-.++..+.+.+.-++|+ .++..||+.. +.+++..++++.....++.+.
T Consensus 257 ~lN~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~ 330 (497)
T COG1953 257 ALNIPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLT 330 (497)
T ss_pred hcCCchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHH
Confidence 67888888887 6654433 3344666666666666655 4688999874 457888887544443133333
Q ss_pred HH-HHHHhhhhcccccHHHHHHHHHhhccC
Q 037598 311 VF-FHVVGSYQVFAMPVFDMIESYLVQHMR 339 (360)
Q Consensus 311 ~~-i~~~~s~pl~~~p~~~~~~~~~~~~~~ 339 (360)
++ -++-+...-+..+.-.-+.+.+++.-.
T Consensus 331 ~~iati~~Ni~aN~vsp~~D~s~l~Pk~in 360 (497)
T COG1953 331 FAVATISTNIAANIVSPGYDLSALFPKYIN 360 (497)
T ss_pred HHHHHHhhhHHhccCChHHHHHHhcccccc
Confidence 33 444445555666666667777765544
No 71
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.59 E-value=0.13 Score=50.72 Aligned_cols=154 Identities=13% Similarity=0.092 Sum_probs=85.2
Q ss_pred ccCCchHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccC--CcccCChHHHHHH
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAG-VLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVP--GKRFDRYPELGEH 102 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~G-iL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~--~~~~~sy~~l~~~ 102 (360)
..|+.+++...+.+..+.+++. .++.|....+.|+.. ....+...+........+.+-..... +.+..|..|.-++
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 4678899999999888877765 467888777788742 22222222222222333333211111 2234588999999
Q ss_pred hcCCccceee---hhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHH
Q 037598 103 CFGPRFGYWF---VMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVS 179 (360)
Q Consensus 103 ~~G~~~g~~~---~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s 179 (360)
-||++. +.+ ..+...+........-+...+..++.++ +.+....+++..+++...+....++...+.-
T Consensus 113 Ryg~~~-~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~--------gi~~~~~iii~~~i~~~Yt~~GGl~av~~TD 183 (487)
T TIGR02121 113 RFNDKS-RLLRIISALIILVFFTIYTSSGLVAGGKLFESTF--------GLDYKTGLLIGALIIVIYTFFGGFLAVSWTD 183 (487)
T ss_pred HhCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999542 222 2221222222212222222333333332 1344555666777778888888999988888
Q ss_pred HHHHHHHHHH
Q 037598 180 LLAAVMSICY 189 (360)
Q Consensus 180 ~~~~~~~~~~ 189 (360)
.+..+..+..
T Consensus 184 ~iQ~~i~~~~ 193 (487)
T TIGR02121 184 FVQGLLMFFA 193 (487)
T ss_pred HHHHHHHHHH
Confidence 8887655443
No 72
>PRK10484 putative transporter; Provisional
Probab=96.56 E-value=0.47 Score=47.24 Aligned_cols=157 Identities=8% Similarity=-0.011 Sum_probs=80.9
Q ss_pred ccCCchHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
..|+.+++-..+.+..+.++++. ++.|-...+.|+.. ........+......+.+..-.. +. +..|..|.-++-|
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~p~~~-r~--~~~T~~e~l~~Ry 111 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSV-MAWEVTAAIALIILALIFLPRYL-KS--GITTIPDFLEERY 111 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHH-hc--CCccHHHHHHHhc
Confidence 46889999999999888887765 67888877788642 11111111111122233332221 12 2458999999999
Q ss_pred CCccceeehhHHHHHHHhhh-hheeeeecccchHHHHHHhccCCcccchhHH----HHHHHHHHHHhhcCCCCCchhHHH
Q 037598 105 GPRFGYWFVMPQQMLVQIAT-DIVYMVTGGKSLMKFVELLDHNVENVRLTYF----ILIFACLHLVLSQTPNFNSLKGVS 179 (360)
Q Consensus 105 G~~~g~~~~~~~~~~~~~g~-~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~----~~i~~~i~lpl~~~~~l~~l~~~s 179 (360)
|++..+ +......+..... +...+...+..+..++... .....+.... .++..+++...+..-.++...+.-
T Consensus 112 g~~~~~-~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~--~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD 188 (523)
T PRK10484 112 DKTTRR-IVSILFLIGYVVSFLPIVLYSGALALNSLFHVS--ELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSD 188 (523)
T ss_pred CchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 976544 3333222221111 1111112222222222110 0001222221 122344556778888999988888
Q ss_pred HHHHHHHHHH
Q 037598 180 LLAAVMSICY 189 (360)
Q Consensus 180 ~~~~~~~~~~ 189 (360)
.+..+..+..
T Consensus 189 ~iQ~vim~i~ 198 (523)
T PRK10484 189 TINGIGLLIG 198 (523)
T ss_pred HHHHHHHHHH
Confidence 8887654443
No 73
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=96.48 E-value=0.037 Score=53.18 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=82.2
Q ss_pred cCCchHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcC
Q 037598 27 SRKAKWWYSAFHNVTAMVGAG-VLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFG 105 (360)
Q Consensus 27 ~~~~s~~~~~~~l~~~~vG~G-iL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G 105 (360)
.|+.+++...+.+..+.+|++ +++.|-...+.|+.. ....+............+.+-.+ +.+ ..|..|.-++.||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r-~~~--~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLR-RSG--AVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHH-HTT----SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhc-ccc--hhhhhhhhhhhcC
Confidence 577899999999999888875 467898888889853 33333333333344444444333 223 3599999999999
Q ss_pred Ccc-ceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 037598 106 PRF-GYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAV 184 (360)
Q Consensus 106 ~~~-g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~ 184 (360)
++. .+.+..+...+..+......+...+..++.+ . ..+.....++..++++..+..-.++...+...+..+
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~----~----gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVL----F----GIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH----T----T--HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhc----c----chhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 754 2333333333333333333333333333333 2 245556666777777788888899998888887776
Q ss_pred HHHHHHH
Q 037598 185 MSICYSM 191 (360)
Q Consensus 185 ~~~~~~~ 191 (360)
..+...+
T Consensus 153 i~~~~~~ 159 (406)
T PF00474_consen 153 IMIIGAI 159 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 74
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.47 E-value=0.34 Score=47.99 Aligned_cols=151 Identities=13% Similarity=0.041 Sum_probs=85.7
Q ss_pred ccCCchHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHhh-c---ccccCCcccCChHHH
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSWAIT-FYSLWQLVE-L---HEVVPGKRFDRYPEL 99 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~~~~-~~t~~~l~~-~---~~~~~~~~~~sy~~l 99 (360)
..|+.+++...+.+..+.+++.. ++.|....+.|+.. . ...+...+. ......+.. . .++..+ ..|..|.
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~T~~e~ 113 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTEYNNN--ALTLPDY 113 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ceeHHHH
Confidence 46889999999999988888766 57898888889753 1 111111121 111122211 1 111222 3588999
Q ss_pred HHHhcCCccceee---hhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchh
Q 037598 100 GEHCFGPRFGYWF---VMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLK 176 (360)
Q Consensus 100 ~~~~~G~~~g~~~---~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~ 176 (360)
-++-||++ .+.+ ..+...+..+..+..-+...+..++.++ ..+.....++..++++..+..-.++...
T Consensus 114 l~~Ry~~~-~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GGl~aV~ 184 (502)
T PRK15419 114 FTGRFEDK-SRILRIISALVILLFFTIYCASGIVAGARLFESTF--------GMSYETALWAGAAATILYTFIGGFLAVS 184 (502)
T ss_pred HHHHhCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999863 2322 2222222222222211222232333222 2345566777778888899999999999
Q ss_pred HHHHHHHHHHHHH
Q 037598 177 GVSLLAAVMSICY 189 (360)
Q Consensus 177 ~~s~~~~~~~~~~ 189 (360)
+.-.+..+..+..
T Consensus 185 ~TD~iQ~~imi~g 197 (502)
T PRK15419 185 WTDTVQASLMIFA 197 (502)
T ss_pred HHHHHHHHHHHHH
Confidence 9988887755443
No 75
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.35 E-value=0.25 Score=49.52 Aligned_cols=151 Identities=11% Similarity=0.080 Sum_probs=92.1
Q ss_pred ccCCchHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAG-VLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~G-iL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
..|+.+++...+.+..+.++++ .++.|....+.|+. +....+...........++..-.+ +.+ ..|..|.-++-|
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~r-r~~--~~T~~e~l~~Rf 105 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLR-KFG--KYTVPDFIGDRY 105 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHH-HCC--CccHHHHHHHHh
Confidence 4688999999999999888765 46789887777864 222222111111223344444333 223 358889888889
Q ss_pred CCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 037598 105 GPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAV 184 (360)
Q Consensus 105 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~ 184 (360)
|+|..+++..+...+..+.....-+...+..++.+. ..+....+++..+++...+..-.++...+.-.+..+
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~--------gi~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~i 177 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFL--------EVDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYI 177 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 866656555554444444443333333444444332 134555666777777788888899999888888866
Q ss_pred HHHH
Q 037598 185 MSIC 188 (360)
Q Consensus 185 ~~~~ 188 (360)
..+.
T Consensus 178 im~i 181 (552)
T TIGR03648 178 VLIV 181 (552)
T ss_pred HHHH
Confidence 4443
No 76
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.31 E-value=0.017 Score=56.14 Aligned_cols=242 Identities=14% Similarity=0.080 Sum_probs=111.8
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHh
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQL--GWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~--G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
++|+.+.++....-.+..+....+.+-...... ++-.+++.+++..++...-.-+....-. +.|. ++..++|..
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~-r~Gl---~~~v~sR~~ 80 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP-RTGL---PTMVLSRAS 80 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH-CC------HHHHTTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc-ccCC---Cchhcchhc
Confidence 456667777777766666666665555444333 3344444444444433333333333222 3443 788899999
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCc---------ccchhHHHHHHHHHHHHhhcCCCCCc
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVE---------NVRLTYFILIFACLHLVLSQTPNFNS 174 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~---------~~~~~~~~~i~~~i~lpl~~~~~l~~ 174 (360)
||. .|..+..+...+..+|-...-....++.+..+.+...+... ........++..++..+.. ....+.
T Consensus 81 FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~g~~~ 158 (440)
T PF02133_consen 81 FGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFA-IYGMKA 158 (440)
T ss_dssp S-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHH-CTHHHH
T ss_pred cCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHH-hcCHHH
Confidence 995 57767777777777777776777788888888776432100 0111112222223333333 345666
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcC-CceehhhhccCCCCCCC
Q 037598 175 LKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAG-HSVVLEIQATIPSTPEV 253 (360)
Q Consensus 175 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~-~~~~~~i~~~m~~~~~~ 253 (360)
++.+............+...+....+.... + ... ....+.....+..++....-.+.. -.+.+...+.+ |+
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~----~~ 230 (440)
T PF02133_consen 159 LRRLAVIAAPILLVVFIGMLIWALSKAGGG-P-LLS--APASPSPSGSFLAAIALVIGSWISWAPNASDYSRYA----KS 230 (440)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCT-H-H-HCC--S--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC------
T ss_pred HHhHHhhhhHHHHhhhhheeEEEeecCCcc-h-hhh--CcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhC----CC
Confidence 666655554433322222222222211000 0 000 000111111333444333322222 34566888888 55
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHhhhhh
Q 037598 254 PSKKPMWKGVVVAYVIVAFCYLSVGISGYW 283 (360)
Q Consensus 254 p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~ 283 (360)
+++.. +....+..........+|+.+..
T Consensus 231 ~~~~~--~~~~~~~~~~~~~~~~~g~lg~~ 258 (440)
T PF02133_consen 231 DTSAW--WGFWLGFPGGFIPFVLVGILGAA 258 (440)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcE--EEEeehhhhHHHHHHHHHHHHHH
Confidence 44433 66667777766776766666544
No 77
>PRK11017 codB cytosine permease; Provisional
Probab=96.22 E-value=0.79 Score=44.04 Aligned_cols=172 Identities=15% Similarity=0.128 Sum_probs=81.9
Q ss_pred CChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCC
Q 037598 94 DRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFN 173 (360)
Q Consensus 94 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~ 173 (360)
.++..++|..||.+ |..+..+...+..++-...-....++.+.... + .+.....+++.++..+.+.. ..+
T Consensus 71 ~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~----~----~~~~~~~~i~~~l~~~~~~~-G~~ 140 (404)
T PRK11017 71 LSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT----G----LDINLLIVLSGLLMTVTAYF-GIS 140 (404)
T ss_pred cCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----C----CCHHHHHHHHHHHHHHHHHH-HHH
Confidence 48999999999965 55555554444444432222222333333321 1 11222455555555555544 345
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhhc-CCCCCCccccccCCccchhHhhHHHHHHHHHHHhcC-CceehhhhccCCCCC
Q 037598 174 SLKGVSLLAAVMSICYSMVALITSIKK-GIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAG-HSVVLEIQATIPSTP 251 (360)
Q Consensus 174 ~l~~~s~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~-~~~~~~i~~~m~~~~ 251 (360)
.++++...+........+...+....+ +-.+ +.. ..+ +.+...+..++...+=.+.. -.+.+...+..
T Consensus 141 ~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~-~~~-~~~----~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~---- 210 (404)
T PRK11017 141 ALTILSRIAVPAIALLGGYSVWLAVNDVGGLD-GLK-AIV----PAEPLDFSAALTLVVGSFISGGTLTADFVRFG---- 210 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-hhh-cCC----CCCcccHHHHHHHHHHHHHHhHhcCCChHhhc----
Confidence 555555544443332222222222221 1011 110 000 11123455555544433333 56788888877
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHhhhhhccCC
Q 037598 252 EVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQ 287 (360)
Q Consensus 252 ~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~ 287 (360)
|+|++. ......+..+...+-.++|.......|+
T Consensus 211 k~~~~~--~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 211 RSAKIA--VLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred cCccce--eehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555432 2455566666666666667666666665
No 78
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.031 Score=54.65 Aligned_cols=230 Identities=17% Similarity=0.193 Sum_probs=126.5
Q ss_pred CchHHHHHHHH-Hhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccc---cCCcccCChHHHHHHh
Q 037598 29 KAKWWYSAFHN-VTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEV---VPGKRFDRYPELGEHC 103 (360)
Q Consensus 29 ~~s~~~~~~~l-~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~---~~~~~~~sy~~l~~~~ 103 (360)
+=++|+.++.- +-.+.|+=+ |=+++...|+|...|++++..+..++..|..=-....++ +.|. .|.-+++ -
T Consensus 29 ~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yflis~-s 104 (643)
T KOG2083|consen 29 LFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYFLISR-S 104 (643)
T ss_pred EEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEEEEEe-c
Confidence 34566665543 233555533 458999999999999999888877777665544433322 2222 3444443 4
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
+||..|-- +.+...+.+.-.+..|++..+|.+.+++....- ...+. ...+..++.+.+ +....+|.+.+.+
T Consensus 105 lg~efggs-igiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~--~~i~g--i~~vt~~ill~i----~~ag~~w~~k~q~ 175 (643)
T KOG2083|consen 105 LGPEFGGS-IGIIYAFANAVATAMYVVGFAESVAHLFETESK--EMIDG--IGSVTVLILLAI----NVAGVEWEAKLQI 175 (643)
T ss_pred ccccccch-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH--HHhcc--hhHHHHHHHHHh----hhccchhHHHHHH
Confidence 67766653 344445555667778999999999999877431 00111 111111111111 3444566666665
Q ss_pred HHHHHHHHHHHhHhhh-cCCCC-----CCccc---cccCCccchhH---hhHHHHHHHHHHHhcCCceehhhhccCCCCC
Q 037598 184 VMSICYSMVALITSIK-KGIHH-----RPESY---GVRSHTEVGKA---FDFLNGLGTVAFAFAGHSVVLEIQATIPSTP 251 (360)
Q Consensus 184 ~~~~~~~~i~~~~~~~-~~~~~-----~~~~~---~~~~~~~~~~~---~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~ 251 (360)
++.++.+ +.+...+. .-.++ +-..+ .+.+.. ..++ ..++..+++++=+..|.-.=..+..++
T Consensus 176 ~ll~il~-iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~-~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL---- 249 (643)
T KOG2083|consen 176 VLLLILL-IAIADFLVGSFFSPNEFSSGFFGYRADIFVENL-NPDIDPGYTFFSVFAVFFPAATGILAGANISGDL---- 249 (643)
T ss_pred HHHHHHH-HHHHHhhhhhccChhhhcccccccchhhcccCC-CCCcCCCCceEeeeeeecchhhhhhccccccCCC----
Confidence 5333222 11111111 11111 00000 000000 1111 255666666666666665666677888
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHH
Q 037598 252 EVPSKKPMWKGVVVAYVIVAFCYLSVG 278 (360)
Q Consensus 252 ~~p~~~~~~~~~~~~~~i~~~~Y~~~g 278 (360)
++|++ ..++....+....+.+|+.+.
T Consensus 250 ~~Pq~-~IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 250 KDPQK-AIPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred CCchh-hcccchhhhhhhhhhhhhhhh
Confidence 89987 678999999999999997653
No 79
>PRK15015 carbon starvation protein A; Provisional
Probab=95.52 E-value=0.11 Score=51.82 Aligned_cols=106 Identities=17% Similarity=0.106 Sum_probs=68.0
Q ss_pred cCCCCCCCCCCcccccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhc-ccccCC
Q 037598 12 QTQGKDLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVEL-HEVVPG 90 (360)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~-~~~~~~ 90 (360)
++++.+.++.+++.+.-...-+-..-+=..++-|+|-+-=|..-.+.||.++.+.+++-+++..---....-. ..++.|
T Consensus 65 ~~r~TPA~~~~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~G 144 (701)
T PRK15015 65 PTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDG 144 (701)
T ss_pred CCCCCCceECCCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCC
Confidence 3333344443443333334445566678889999999999999999999999998888665554443333333 222444
Q ss_pred cccCChHHHHHHhcCCccceeehhHHHHHHH
Q 037598 91 KRFDRYPELGEHCFGPRFGYWFVMPQQMLVQ 121 (360)
Q Consensus 91 ~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~ 121 (360)
+ |.+|++++..|++.+. +..+.+++.+
T Consensus 145 r---Sig~ia~~~iG~~~~~-lfli~i~~il 171 (701)
T PRK15015 145 R---SLGELVKEEMGPTAGV-IALVACFMIM 171 (701)
T ss_pred c---cHHHHHHHHhhHHHHH-HHHHHHHHHH
Confidence 3 9999999999986544 4433333333
No 80
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.34 E-value=0.13 Score=50.00 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=74.0
Q ss_pred cccCCCCCCCCCCcccccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhc-cccc
Q 037598 10 IEQTQGKDLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVEL-HEVV 88 (360)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~-~~~~ 88 (360)
.+++++.+.+..+++.+.-..+.+...-+=..++-|+|-+-=|..-++.||.+|.+.+++-+.+..---..++-. ..++
T Consensus 32 ~dp~R~TPA~~~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~ 111 (575)
T COG1966 32 LDPNRPTPAHRKNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRH 111 (575)
T ss_pred cCCCCCCCceeccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeecc
Confidence 344444444444444444456667777788899999999999999999999999998888666655444444433 2234
Q ss_pred CCcccCChHHHHHHhcCCccceeehhHHHHHHHh
Q 037598 89 PGKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQI 122 (360)
Q Consensus 89 ~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~ 122 (360)
.|+ |.+|++++..|++.|. +..+...+..+
T Consensus 112 ~G~---Si~~ia~~~lG~~a~~-~~~~~~l~ili 141 (575)
T COG1966 112 GGK---SIGEIAGKYLGRTAKV-FFLLLALILLI 141 (575)
T ss_pred CCc---cHHHHHHHHhhhhHHH-HHHHHHHHHHH
Confidence 554 9999999999986654 44444333333
No 81
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=94.99 E-value=1.2 Score=42.65 Aligned_cols=211 Identities=13% Similarity=0.129 Sum_probs=106.1
Q ss_pred chHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhccc-c-cCCcccCChHHHHHHhcCC
Q 037598 30 AKWWYSAFHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHE-V-VPGKRFDRYPELGEHCFGP 106 (360)
Q Consensus 30 ~s~~~~~~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~-~-~~~~~~~sy~~l~~~~~G~ 106 (360)
.|-..-+...+++.+|.|= .-.||...+.|-..=++..++..+...+ -.++.|-.. + ..+....+|..++. ++
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~Gi-Plli~Ef~iGr~~~~~~~~a~~~l~~---~~ 84 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGI-PLLLAEFAIGRRGRKNAVGAFRKLAP---KK 84 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhH-HHHHHHHHhhhhcCCChhHHHHHhcc---Cc
Confidence 5667778888899999874 6789999888854322222222222222 233334311 1 11222335655554 33
Q ss_pred ccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCC---cc--------c-chhHHHHHHH---HHHHHhhcCCC
Q 037598 107 RFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNV---EN--------V-RLTYFILIFA---CLHLVLSQTPN 171 (360)
Q Consensus 107 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~---~~--------~-~~~~~~~i~~---~i~lpl~~~~~ 171 (360)
+ .+++.++ .....+..+.-|.+..+-.+..+.....+.. .+ . +......... .+..-+...|.
T Consensus 85 ~-~~~~G~~-gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~G 162 (439)
T COG0733 85 K-WEWIGWF-GVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRG 162 (439)
T ss_pred c-chhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHh
Confidence 3 3444443 3455556666677777766666655433210 00 0 1011111111 11112333455
Q ss_pred CCc-hhHHHHHHHHHHHHHHHHHHhHhhhcC-CCCCCccccccC-CccchhHhhHHHHHHHHHHHhcC-CceehhhhccC
Q 037598 172 FNS-LKGVSLLAAVMSICYSMVALITSIKKG-IHHRPESYGVRS-HTEVGKAFDFLNGLGTVAFAFAG-HSVVLEIQATI 247 (360)
Q Consensus 172 l~~-l~~~s~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fsf~~-~~~~~~i~~~m 247 (360)
+++ +.+.+.+..-..+..+++..++.+..+ ..+ +.++-+.+ ...-.++.....++|...|+..- ...+.+.-+.+
T Consensus 163 V~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~-G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL 241 (439)
T COG0733 163 VKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAME-GLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYL 241 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHH-HHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 544 666666555544444444445554432 112 23322211 11122356788999999999864 67777888888
No 82
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.35 E-value=0.17 Score=48.64 Aligned_cols=131 Identities=12% Similarity=0.205 Sum_probs=81.7
Q ss_pred Hhhhhhhhhc---hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCccceeehhHH
Q 037598 40 VTAMVGAGVL---GLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQ 116 (360)
Q Consensus 40 ~~~~vG~GiL---~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~ 116 (360)
++++-.-|.- ..-....++|.+.++.+.++-+.+.+..+..-....+..++ ..-..+++++.+|+ .|..+..+.
T Consensus 206 i~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g--~~lL~~i~~~~~G~-~G~~ll~ii 282 (427)
T PF05525_consen 206 INAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDING--AELLSQIANHLFGS-AGQILLGII 282 (427)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCH--HHHHHHHHHHHcCh-hHHHHHHHH
Confidence 3444444444 23344445666555555444333333332211111110111 12466779999995 889899999
Q ss_pred HHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHH
Q 037598 117 QMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLL 181 (360)
Q Consensus 117 ~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~ 181 (360)
+.+.|+-++++.....+|+.++..+. .+++.|.++++++-+.++.. .++++-.++.-
T Consensus 283 v~lACLTTaIGL~~a~a~yf~~~~~k-------isY~~~v~i~~i~S~~ian~-Gl~~Ii~~s~P 339 (427)
T PF05525_consen 283 VFLACLTTAIGLISACAEYFSELFPK-------ISYKVWVIIFTIFSFIIANL-GLDQIIKISVP 339 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-------cChHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Confidence 99999999999999999999998763 46778888877777776666 55555555543
No 83
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.30 E-value=0.6 Score=46.78 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=28.1
Q ss_pred cCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHhhh
Q 037598 246 TIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGISG 281 (360)
Q Consensus 246 ~m~~~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~g 281 (360)
.|-++.|+|+| ..+|....+....+++|+++.+..
T Consensus 315 nMSgELk~PSk-SIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 315 NMSGELKAPSK-SIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred CcCccccCccc-cCCccchHHHHHHHHHHHHHHHHh
Confidence 33344499998 689999999999999999886643
No 84
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=93.76 E-value=6.5 Score=38.11 Aligned_cols=296 Identities=13% Similarity=0.092 Sum_probs=141.3
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChh--HHHHHHHHHHHHHHHHHHHHhhcccccCCcc-cCChHHHHHH
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWG--AGFAAIFGSWAITFYSLWQLVELHEVVPGKR-FDRYPELGEH 102 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~--~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~-~~sy~~l~~~ 102 (360)
++|.=|+++-+..=....++++..-+..+--+.|+- .+++...+ .+....+.-.....+|.. ..+++-..+.
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~v-----G~~~~~~f~~lns~~G~~yhIsFpv~sR~ 126 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWV-----GYLFTAIFLVLNSRPGSDYHISFPVLSRS 126 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHH-----HHHHHHHHHHHccCCCcccccceeeeeee
Confidence 355678999888888888888888888887788853 33333222 222222222222234432 3567777777
Q ss_pred hcCCcccee---ehhHHHHHHHhhhhheeeeecccchHHHHHHhccC---------CcccchhH--HHHHHHHHHHHhhc
Q 037598 103 CFGPRFGYW---FVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHN---------VENVRLTY--FILIFACLHLVLSQ 168 (360)
Q Consensus 103 ~~G~~~g~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~---------~~~~~~~~--~~~i~~~i~lpl~~ 168 (360)
-||= +|.. +..+.+.+..+|... -..++.++-+++...++ ....+... +.+++=++.+|..+
T Consensus 127 sFGi-ygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~ 202 (572)
T KOG2466|consen 127 SFGI-YGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYW 202 (572)
T ss_pred ehhh-hHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheee
Confidence 7772 3332 233333333344322 34566666666543321 01122222 23445566666666
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhc-CCceehhhhccC
Q 037598 169 TPNFNSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFA-GHSVVLEIQATI 247 (360)
Q Consensus 169 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~-~~~~~~~i~~~m 247 (360)
. ..++++.+-....+....+..-+++....+..--|+......+.....-.+.+..++.-.+-.|. ...|.|..-+--
T Consensus 203 ~-~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~ 281 (572)
T KOG2466|consen 203 F-PPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFA 281 (572)
T ss_pred c-cHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhhc
Confidence 5 45555655555554443333322222222211111222111111122223344444444443333 356778888777
Q ss_pred CCCCCCCCCCCcchhhhHHHHHHHHHHHHHH----hhhhhccCCCch--hhHhhcccCc------hHHHHHHHHHHHHHH
Q 037598 248 PSTPEVPSKKPMWKGVVVAYVIVAFCYLSVG----ISGYWAFGQYVE--DDVLISLRKP------AWLIAIANFMVFFHV 315 (360)
Q Consensus 248 ~~~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g----~~gy~~fG~~~~--~~il~~~~~~------~~~~~~~~~~~~i~~ 315 (360)
|+|++.. ..-.++..+.+.+.-++| ..++..||.+-- -++++++-.+ ......+.+.++++.
T Consensus 282 ----ksp~a~~--~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~laq 355 (572)
T KOG2466|consen 282 ----KSPNAIW--WGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFALAQ 355 (572)
T ss_pred ----CCCCccc--hhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHHHHH
Confidence 7776544 344444555555544444 457889997443 3555555221 122333344444443
Q ss_pred Hh-hhhcccccHHHHHHHHHhhc
Q 037598 316 VG-SYQVFAMPVFDMIESYLVQH 337 (360)
Q Consensus 316 ~~-s~pl~~~p~~~~~~~~~~~~ 337 (360)
+. .+.-...++-.-+..++++-
T Consensus 356 l~~NISan~vaagnDl~~L~Pky 378 (572)
T KOG2466|consen 356 LGTNISANSVAAGNDLSALLPKY 378 (572)
T ss_pred HhcchhccccccchhhHhhCcce
Confidence 32 33334444455555555443
No 85
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=93.08 E-value=0.28 Score=46.51 Aligned_cols=77 Identities=13% Similarity=0.322 Sum_probs=56.6
Q ss_pred ChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCc
Q 037598 95 RYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNS 174 (360)
Q Consensus 95 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~ 174 (360)
-..+++++.+|+ .|..+..+.+.+.|+.++++.....+|...++.+. .++..+.++..+....++.. ++++
T Consensus 256 ~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-------~~y~~~v~~~~l~s~~ia~~-Gl~~ 326 (378)
T TIGR00796 256 ILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-------LSYKTWVIVFTLFSFIVANL-GLTQ 326 (378)
T ss_pred HHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHh-CHHH
Confidence 567889999996 78889999999999999999999988888777542 45666666666655555444 5555
Q ss_pred hhHHHH
Q 037598 175 LKGVSL 180 (360)
Q Consensus 175 l~~~s~ 180 (360)
+-.++.
T Consensus 327 Ii~~~~ 332 (378)
T TIGR00796 327 IISISI 332 (378)
T ss_pred HHHHHH
Confidence 444444
No 86
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=92.81 E-value=2.4 Score=39.95 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=45.2
Q ss_pred ChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhc--CCCC
Q 037598 95 RYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQ--TPNF 172 (360)
Q Consensus 95 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~--~~~l 172 (360)
+..|..++-+||+++. ...+...+.+.....+-+...+..++-+. ..+...+.++..+..+.+.+ .++.
T Consensus 43 ~l~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------g~~~~~~~~~~~~~~~~ll~~~~~~y 113 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAW-FLWILIFLANIATQAAEIIGIAIALNLLF--------GIPLWIWVLLVAVIAILLLWLSSGGY 113 (358)
T ss_pred ChhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 7788888888877654 45555555555555544444443333332 13345555555555544444 6677
Q ss_pred CchhHHHHHHHH
Q 037598 173 NSLKGVSLLAAV 184 (360)
Q Consensus 173 ~~l~~~s~~~~~ 184 (360)
+.+..+...-+.
T Consensus 114 ~~~E~~~~~lv~ 125 (358)
T PF01566_consen 114 RRLERILKVLVA 125 (358)
T ss_pred hHHHHHHHHHHH
Confidence 777666554444
No 87
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=92.55 E-value=11 Score=36.51 Aligned_cols=283 Identities=17% Similarity=0.185 Sum_probs=132.1
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHHHH-hh--ChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCc
Q 037598 31 KWWYSAFHNVTAMVGAGVLGLPFAFS-QL--GWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPR 107 (360)
Q Consensus 31 s~~~~~~~l~~~~vG~GiL~lP~~f~-~~--G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~ 107 (360)
..+...+.+.....|+|=|-.|-..- ++ -|..+.+-+++.+..--.-+.+-.. +.+. +++++++++ ||+
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~----~~~~---~~~~l~~~v-~~~ 75 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVA----KSGG---GIEDLASRV-GPK 75 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh----hcCC---CHHHHhccc-CcH
Confidence 34667788999999999999987654 33 3666777776666443333322111 2222 788888885 666
Q ss_pred cceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q 037598 108 FGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSI 187 (360)
Q Consensus 108 ~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~~~ 187 (360)
.+..+. .....++|-..+-=...+-..+--+....+...........+++..+.+-+++.+ -+.+-.+|.+.+=
T Consensus 76 f~~if~--~~i~l~IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p----~kivd~iGk~LTP 149 (427)
T PF05525_consen 76 FALIFT--ILIYLSIGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSLNP----SKIVDRIGKFLTP 149 (427)
T ss_pred HHHHHH--HHHHHHHHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHhch----hhHHHHHHHHHHH
Confidence 665322 1222233322211111221111111121121122344445555555555555443 3444444444332
Q ss_pred ---HHHHHHHhHhhhcCCCC-CCccccccCCccchhHhh---HHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcc
Q 037598 188 ---CYSMVALITSIKKGIHH-RPESYGVRSHTEVGKAFD---FLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMW 260 (360)
Q Consensus 188 ---~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~ 260 (360)
..+.++++..+.+...+ .+.+....+.....++.+ -+.+++-..|+-. +..-.++. ...+++...
T Consensus 150 ~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~i----Ii~~i~~~----g~~~~k~~~ 221 (427)
T PF05525_consen 150 ILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGII----IINAIRQK----GYKDKKEIK 221 (427)
T ss_pred HHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHh----CCCCHHHHH
Confidence 22223333344433211 011100000101111111 1223333333322 22222322 111222222
Q ss_pred hhhh----HHHHHHHHHHHHHHhhhhhccC---CCch-hhHhhcccC---chHHHHHHHHHHHHHHHhhhhcccccHHHH
Q 037598 261 KGVV----VAYVIVAFCYLSVGISGYWAFG---QYVE-DDVLISLRK---PAWLIAIANFMVFFHVVGSYQVFAMPVFDM 329 (360)
Q Consensus 261 ~~~~----~~~~i~~~~Y~~~g~~gy~~fG---~~~~-~~il~~~~~---~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~ 329 (360)
|... ++.....++|...+..|...-+ ++.+ +.++....+ .+....+..+.+.++++++---....+-|.
T Consensus 222 ~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~y 301 (427)
T PF05525_consen 222 KYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEY 301 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 4445566667777776665443 2233 345544421 234455667777788888877777788888
Q ss_pred HHHHHh
Q 037598 330 IESYLV 335 (360)
Q Consensus 330 ~~~~~~ 335 (360)
+++.++
T Consensus 302 f~~~~~ 307 (427)
T PF05525_consen 302 FSELFP 307 (427)
T ss_pred HHHHhc
Confidence 888776
No 88
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=92.01 E-value=7.8 Score=37.54 Aligned_cols=176 Identities=16% Similarity=0.129 Sum_probs=96.1
Q ss_pred CChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCC
Q 037598 94 DRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFN 173 (360)
Q Consensus 94 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~ 173 (360)
.++.|....-++.+..|++..+..++..+...++-++..+..+..+++ .+...-.++..+++........++
T Consensus 104 yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--------v~~~vgv~ig~ilm~~Yvv~GGM~ 175 (529)
T COG4147 104 YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--------VPYHVGVVIGGILMMVYVVLGGMK 175 (529)
T ss_pred cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------CCceeehhhHhHHHHHHHHhcchh
Confidence 499998777777666676666655555555555555555544444432 234445566667777788888999
Q ss_pred chhHHHHHHHHHHHHHH-HHHHhHhhhc-CCCCC---------Ccc-c--cccCCccchhHhhHHHHHHHHHHHhcCCce
Q 037598 174 SLKGVSLLAAVMSICYS-MVALITSIKK-GIHHR---------PES-Y--GVRSHTEVGKAFDFLNGLGTVAFAFAGHSV 239 (360)
Q Consensus 174 ~l~~~s~~~~~~~~~~~-~i~~~~~~~~-~~~~~---------~~~-~--~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~ 239 (360)
...|.....-+..+... +..+...... +.+.. +.+ . ..++..... +-.+.++...--..|..-
T Consensus 176 atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~---~~i~~isl~~aLm~GTAg 252 (529)
T COG4147 176 ATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYK---DPIDFISLGFALMVGTAG 252 (529)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCccc---CHHHHHHHHHHHHHccCC
Confidence 99998887766433322 2222221111 11110 000 0 001111122 233444444333344444
Q ss_pred ehhhhccCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHhhhhh
Q 037598 240 VLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGISGYW 283 (360)
Q Consensus 240 ~~~i~~~m~~~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~ 283 (360)
+|.+.-.-= --|+-|.-++.+.++......+|+..-+.|+.
T Consensus 253 LPHil~RFf---Tvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 253 LPHILMRFF---TVPDAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred CCeEEEEEE---ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444432110 22444455589999999999999988776654
No 89
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=90.96 E-value=6.4 Score=39.21 Aligned_cols=108 Identities=13% Similarity=0.219 Sum_probs=53.6
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHHHHHhHhhhc-CCCCCCccccccCC-ccchhHhhHHHHHHHHHHHhcC-Cceeh
Q 037598 165 VLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKK-GIHHRPESYGVRSH-TEVGKAFDFLNGLGTVAFAFAG-HSVVL 241 (360)
Q Consensus 165 pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~fsf~~-~~~~~ 241 (360)
-++..|.+++.+.+......+.+..+++..++.+.. |..+ +.++-+.+. ..-.+..-...|++...|+... ...+.
T Consensus 192 ~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~-Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~i 270 (523)
T PF00209_consen 192 FFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASE-GLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMI 270 (523)
T ss_dssp TTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHH-HHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHH
T ss_pred HHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCC-ceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEE
Confidence 456667777777666655543333333344444332 1111 222211111 1112234457899999999976 66667
Q ss_pred hhhccCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHh
Q 037598 242 EIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGI 279 (360)
Q Consensus 242 ~i~~~m~~~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g~ 279 (360)
..-+.+ |.+.+..|........-.+..++.|+
T Consensus 271 t~~Sy~------~~~~n~~~~a~~v~~~~~~~sllag~ 302 (523)
T PF00209_consen 271 TYGSYN------KFKNNIFRDALIVAFINTLVSLLAGL 302 (523)
T ss_dssp HHHTTS-------TTS-SHHHHHHHHHHHHHHHHTTGT
T ss_pred EEcCcC------CCCccccccceEEEcCchhhhHhHHH
Confidence 666655 33345556555555555555544443
No 90
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=90.43 E-value=1.1 Score=42.37 Aligned_cols=134 Identities=14% Similarity=0.190 Sum_probs=86.9
Q ss_pred HhhhhhhhhchHH---HHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCccceeehhHH
Q 037598 40 VTAMVGAGVLGLP---FAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQ 116 (360)
Q Consensus 40 ~~~~vG~GiL~lP---~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~ 116 (360)
+++.=.-|.-.=. ......|++.++.+.++-..+.+....-=....+..+|. .=..+..++.||+ .|+++...+
T Consensus 208 v~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~--~IL~~~s~~~fG~-~G~~lL~~i 284 (431)
T COG1114 208 VNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGG--QILSAYSQHLFGS-YGSILLGLI 284 (431)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchH--HHHHHHHHHHhch-hhHHHHHHH
Confidence 4444444555433 334467777666665555545444411000000101121 2456678999995 899999999
Q ss_pred HHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 037598 117 QMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAV 184 (360)
Q Consensus 117 ~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~ 184 (360)
+.+.|+-++++.+...+|+.++..+. .++..|..++.++-+.++.. +++++-..|.--..
T Consensus 285 v~lACLTTaiGLi~a~aefF~~~~p~-------~SY~~~v~if~i~sflvan~-GL~~Ii~isvPvL~ 344 (431)
T COG1114 285 VFLACLTTAVGLIVACAEFFSKLVPK-------LSYKTWVIIFTLISFLVANL-GLEQIIKISVPVLT 344 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-------ccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 99999999999999999999998764 56788888888887777666 66666655554433
No 91
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=88.35 E-value=1.8 Score=43.93 Aligned_cols=111 Identities=16% Similarity=0.239 Sum_probs=69.9
Q ss_pred CCchHHHHHHHHHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccc--cCCcccCChHHHHHHhc
Q 037598 28 RKAKWWYSAFHNVTAMVGAGVL-GLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEV--VPGKRFDRYPELGEHCF 104 (360)
Q Consensus 28 ~~~s~~~~~~~l~~~~vG~GiL-~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~--~~~~~~~sy~~l~~~~~ 104 (360)
|=++...-..-.+..+.|+=++ =+-+....+|...|.++.+++++.+..|+.-+...+.. .+... +|.-+.+. +
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG--sYfmISRs-L 189 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG--SYFMISRS-L 189 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--eeEEEecc-c
Confidence 3345555555667778877664 47888889999999999888888888887777665321 22222 67766665 6
Q ss_pred CCccceeehhHHHHHHHhhhhheeeeecccchHH-HHHH
Q 037598 105 GPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMK-FVEL 142 (360)
Q Consensus 105 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~-~~~~ 142 (360)
||.+|-.+. +|..+-.-.....|++..-+.+-. ++|.
T Consensus 190 GPEFGgAVG-lcFYLgtT~AaaMYIlGaVEi~L~Yi~P~ 227 (1075)
T KOG2082|consen 190 GPEFGGAVG-LCFYLGTTVAAAMYILGAVEIFLTYIFPA 227 (1075)
T ss_pred Cccccceee-ehhhhhhHHHHHHHHHhHHHHHHHHHccH
Confidence 777776444 333333333344466666665443 4443
No 92
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=86.46 E-value=14 Score=36.42 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=83.6
Q ss_pred cCCchHHHHHHHHHhhhhhhhhchHH----HHH-H-----------------------hhChhHHHHHHHHHHHHHHHHH
Q 037598 27 SRKAKWWYSAFHNVTAMVGAGVLGLP----FAF-S-----------------------QLGWGAGFAAIFGSWAITFYSL 78 (360)
Q Consensus 27 ~~~~s~~~~~~~l~~~~vG~GiL~lP----~~f-~-----------------------~~G~~~g~i~ll~~~~~~~~t~ 78 (360)
+++-|.++=..++..+-+|+|++.-. ... . .=|. .+..+..+.++...|..
T Consensus 72 kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~-~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 72 KPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGF-HAWAIYALVGLAIAYFF 150 (485)
T ss_dssp --SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHheee
Confidence 44567777788899999999987543 221 1 1111 12223333333333222
Q ss_pred HHHhhcccccCC-cccCChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHH
Q 037598 79 WQLVELHEVVPG-KRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFIL 157 (360)
Q Consensus 79 ~~l~~~~~~~~~-~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (360)
+. +. ++- -+..=|+-+.++.-|+ .|+ ++|++.++...+....-+-.....+..-++...+-.+.......++
T Consensus 151 y~----k~-~~~~~ss~l~pl~g~~~~g~-~g~-~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii 223 (485)
T PF02028_consen 151 YN----KG-KPLRISSALYPLLGDRINGP-LGK-IIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIII 223 (485)
T ss_dssp HT----S----SSGGGGCHHHHHHHHHSH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHH
T ss_pred ee----cC-CCCchhhhhhhhcCCcccCc-chh-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 21 00 111 1112355566666663 676 7888888777777776677777777777766654322122222233
Q ss_pred HHHHHHHHhhcCCCCCc-hhHHHHHHHHHHHHHHH
Q 037598 158 IFACLHLVLSQTPNFNS-LKGVSLLAAVMSICYSM 191 (360)
Q Consensus 158 i~~~i~lpl~~~~~l~~-l~~~s~~~~~~~~~~~~ 191 (360)
+...++...+....+++ ++++|-+.+...+..++
T Consensus 224 ~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~ 258 (485)
T PF02028_consen 224 IVITVIFTISAVSGLDKGIKRLSNINVYLAFALLL 258 (485)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445666777744 88888877776555443
No 93
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=84.04 E-value=43 Score=32.49 Aligned_cols=274 Identities=11% Similarity=0.058 Sum_probs=129.5
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHHHH-hhC--hhHHHHHHHHHHHHHH-HHHHHHhhcccccCCcccCChHHHHHHhcCC
Q 037598 31 KWWYSAFHNVTAMVGAGVLGLPFAFS-QLG--WGAGFAAIFGSWAITF-YSLWQLVELHEVVPGKRFDRYPELGEHCFGP 106 (360)
Q Consensus 31 s~~~~~~~l~~~~vG~GiL~lP~~f~-~~G--~~~g~i~ll~~~~~~~-~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~ 106 (360)
..+..-+.+..-..|+|=|-.|-..- ++| |..+.+-+++.+..-- .+...+. +.+. +++++++++ ||
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava-----~~~g---~~~~l~~rv-~~ 79 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALA-----KVGG---GVDSLSTPI-GK 79 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh-----hcCC---CHHHHhhhc-ch
Confidence 46778889999999999999987654 344 5555665555543322 2222222 2222 788888885 66
Q ss_pred ccceeehhHHHHHHHhhh--------hheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHH
Q 037598 107 RFGYWFVMPQQMLVQIAT--------DIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGV 178 (360)
Q Consensus 107 ~~g~~~~~~~~~~~~~g~--------~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~ 178 (360)
+.+..+ ......++|- .++|-......+ ++. +.....+.+++..+.+-+++. .-+.+
T Consensus 80 ~f~~~f--~~~i~l~IGP~~aiPRtaavsfEm~i~p~~--------~~~-~~~~~ifs~iFF~i~~~l~l~----p~klv 144 (439)
T PRK15433 80 VAGVLL--ATVCYLAVGPLFATPRTATVSFEVGIAPLT--------GDS-ALPLFIYSLVYFAIVILVSLY----PGKLL 144 (439)
T ss_pred HHHHHH--HHHHHHHHhhccccCCccccchhheeeccC--------Ccc-cHHHHHHHHHHHHHHHHHHcC----hhhHH
Confidence 666532 2233344442 222332222111 110 112223344444444444443 33455
Q ss_pred HHHHHHHHHHH---HHHHHhHhhhcCCCC-CCccccccCCccchhHh---hHHHHHHHHHHHhcCCceehhhhc-cCCCC
Q 037598 179 SLLAAVMSICY---SMVALITSIKKGIHH-RPESYGVRSHTEVGKAF---DFLNGLGTVAFAFAGHSVVLEIQA-TIPST 250 (360)
Q Consensus 179 s~~~~~~~~~~---~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~fsf~~~~~~~~i~~-~m~~~ 250 (360)
-.+|.+.+=.. +.++++..+.+...+ .+.+..........++. +-+.+++-..|+-.... .+.+ ..
T Consensus 145 d~iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~---~i~~~G~--- 218 (439)
T PRK15433 145 DTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVN---AARSRGV--- 218 (439)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHcCC---
Confidence 55555543222 222333333332211 00000000010011111 12344455555533322 2222 12
Q ss_pred CCCCCCCC--cchhhhHHHHHHHHHHHHHHhhhhhc---cCCC-chhhHhhccc---CchHHHHHHHHHHHHHHHhhhhc
Q 037598 251 PEVPSKKP--MWKGVVVAYVIVAFCYLSVGISGYWA---FGQY-VEDDVLISLR---KPAWLIAIANFMVFFHVVGSYQV 321 (360)
Q Consensus 251 ~~~p~~~~--~~~~~~~~~~i~~~~Y~~~g~~gy~~---fG~~-~~~~il~~~~---~~~~~~~~~~~~~~i~~~~s~pl 321 (360)
+++++.+ ..++-.++.....++|...+..|... +++. ....++.... -+++...+..+.+.++++++-.-
T Consensus 219 -~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIG 297 (439)
T PRK15433 219 -TEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVG 297 (439)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 3332211 11233355555667788777777654 3322 2334444331 23455666677777788888777
Q ss_pred ccccHHHHHHHHHh
Q 037598 322 FAMPVFDMIESYLV 335 (360)
Q Consensus 322 ~~~p~~~~~~~~~~ 335 (360)
....+-+.+++.+.
T Consensus 298 Li~a~a~~f~~~~~ 311 (439)
T PRK15433 298 LTCACAEFFAQYVP 311 (439)
T ss_pred HHHHHHHHHHhhcC
Confidence 77777777777653
No 94
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=82.33 E-value=21 Score=34.29 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=33.2
Q ss_pred cCCchHHHHHHHHHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHH
Q 037598 27 SRKAKWWYSAFHNVTAMVGAGVL-GLPFAFSQLGWGAGFAAIFGSWAI 73 (360)
Q Consensus 27 ~~~~s~~~~~~~l~~~~vG~GiL-~lP~~f~~~G~~~g~i~ll~~~~~ 73 (360)
+++.|.+|+.+..+.+.+|+|=+ +..-+....|.- ++..+-+.+++
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~ 62 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALL 62 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHH
Confidence 45689999999999999999865 688888877732 33333333333
No 95
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=80.52 E-value=3.6 Score=39.76 Aligned_cols=74 Identities=15% Similarity=0.301 Sum_probs=57.1
Q ss_pred HHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchh
Q 037598 97 PELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLK 176 (360)
Q Consensus 97 ~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~ 176 (360)
....++.+|+ +|+++..+.+.+.|+-++++.....+|..++..+ .++..+.++.+++.++++.. .++++-
T Consensus 268 ~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------isY~~~v~i~~l~S~~lSn~-G~~~II 337 (439)
T PRK15433 268 HAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------LSYRTLVFILGGFSMVVSNL-GLSQLI 337 (439)
T ss_pred HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CcHHHHHHHHHHHHHHHHHh-HHHHHH
Confidence 4457889996 7888999999999999999999988888877743 46678888888888887776 555544
Q ss_pred HHHH
Q 037598 177 GVSL 180 (360)
Q Consensus 177 ~~s~ 180 (360)
..+.
T Consensus 338 ~~s~ 341 (439)
T PRK15433 338 QISV 341 (439)
T ss_pred HHHH
Confidence 4444
No 96
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=80.08 E-value=47 Score=33.41 Aligned_cols=241 Identities=14% Similarity=0.078 Sum_probs=121.2
Q ss_pred ccCCchHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccc-cCCcccCChHHHHHHh
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEV-VPGKRFDRYPELGEHC 103 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~-~~~~~~~sy~~l~~~~ 103 (360)
..|+..++-....++.+.+|++. +++|.....-|.-..... +.......++...... ..+....+-.|.-++.
T Consensus 43 ~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~-----~~~l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~R 117 (585)
T KOG2349|consen 43 GGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFE-----WNALLSVLLLGWIFIPVFYRLGVTTMYEYLEKR 117 (585)
T ss_pred cCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHH-----HHHHHHHHhhheEEEEEEEecCeeehhHHHHHH
Confidence 35778888888888888887754 789988777775432111 1222222222222110 1122234566667777
Q ss_pred cCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 104 FGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 104 ~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
||++ .+....+...+..+.....++-.-+-.+++... ++...-..+..+++...+....+|..-|.=.+..
T Consensus 118 f~~~-~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~ 188 (585)
T KOG2349|consen 118 FGGR-VRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------INLYLIVVILGLICVFYTALGGLKAVIWTDVVQT 188 (585)
T ss_pred hccc-chhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------cCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHH
Confidence 8865 454454444444444444444433333333321 1222233345556666777778888888877777
Q ss_pred HHHHHHHHHHHhHhhh-cCCC---------CCCcc----ccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCC
Q 037598 184 VMSICYSMVALITSIK-KGIH---------HRPES----YGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPS 249 (360)
Q Consensus 184 ~~~~~~~~i~~~~~~~-~~~~---------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~ 249 (360)
+.++.....+.+.... .|-. .+..+ ...++....+-|.-++.+...-...|+.+.+. +|+.|
T Consensus 189 ~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~--VQR~l-- 264 (585)
T KOG2349|consen 189 VIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLI--VQRYL-- 264 (585)
T ss_pred HHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHH--HhHHh--
Confidence 7665544444443221 1100 01111 11111222233443444444455555555554 45555
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHH---HHHHhhhhhccC
Q 037598 250 TPEVPSKKPMWKGVVVAYVIVAFCY---LSVGISGYWAFG 286 (360)
Q Consensus 250 ~~~~p~~~~~~~~~~~~~~i~~~~Y---~~~g~~gy~~fG 286 (360)
.-|+.++.++..........+.. ...|+..|..|-
T Consensus 265 --sl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~ 302 (585)
T KOG2349|consen 265 --SLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYT 302 (585)
T ss_pred --ccccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeecc
Confidence 44555555577665555444444 445555566663
No 97
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=79.60 E-value=32 Score=33.14 Aligned_cols=136 Identities=21% Similarity=0.187 Sum_probs=65.8
Q ss_pred chHHHHHHHHHhhhhhhhhchH-HHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcCCcc
Q 037598 30 AKWWYSAFHNVTAMVGAGVLGL-PFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRF 108 (360)
Q Consensus 30 ~s~~~~~~~l~~~~vG~GiL~l-P~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G~~~ 108 (360)
.......+....+-+|.|=++- -.+=++-||-+.+++++ ..+..+-.+.+..=.-..+|+ +..|..++.++|++
T Consensus 17 l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vill--s~l~~~~~Q~~~arLgivTG~---~laq~ir~~y~~~~ 91 (416)
T COG1914 17 LALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILL--SNLMAYILQELSARLGIVTGK---GLAEAIRERYLPGL 91 (416)
T ss_pred HHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHccchH
Confidence 4444444555555555554432 22234556543332222 222222222222111113443 77888888899877
Q ss_pred ceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHH
Q 037598 109 GYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVS 179 (360)
Q Consensus 109 g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s 179 (360)
+. +.++...+....++++-.+..+-.++-++. .+..+-.++.++..+.+...++.+.+..+.
T Consensus 92 ~~-~~~~~~~i~~~at~iae~~G~aial~ll~~--------ip~~~g~iItav~~~iil~~~~~r~~E~~v 153 (416)
T COG1914 92 GI-LLWILAEIAGIATDIAEVAGIAIALNLLFG--------IPLIIGAVITAVDVLIILLLKGYRLLERVV 153 (416)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 64 666666666677766666555544444321 123334444444444444444444444443
No 98
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=78.21 E-value=24 Score=34.85 Aligned_cols=45 Identities=9% Similarity=0.181 Sum_probs=32.6
Q ss_pred ChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHH
Q 037598 95 RYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFV 140 (360)
Q Consensus 95 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 140 (360)
...++-....|+|.. .....++++..+..+++-+...+...-.+-
T Consensus 326 p~~~i~~~~lg~k~~-v~~~~l~ii~~f~~gi~s~~a~SR~v~afa 370 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGA-VFLLSLIIIALFFMGISSLTASSRLVYAFA 370 (550)
T ss_pred hHHHHHHHhcCCCce-EehhHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 677888889998765 566666777777777777766666655554
No 99
>PRK09950 putative transporter; Provisional
Probab=77.61 E-value=19 Score=35.59 Aligned_cols=161 Identities=15% Similarity=0.155 Sum_probs=86.7
Q ss_pred CCchHHHHHHHHHhhhhhhhhchH----HHHHHh---hCh--------hHHHHHHHHHHHHHHHHHHHHhhc---c-ccc
Q 037598 28 RKAKWWYSAFHNVTAMVGAGVLGL----PFAFSQ---LGW--------GAGFAAIFGSWAITFYSLWQLVEL---H-EVV 88 (360)
Q Consensus 28 ~~~s~~~~~~~l~~~~vG~GiL~l----P~~f~~---~G~--------~~g~i~ll~~~~~~~~t~~~l~~~---~-~~~ 88 (360)
++-|.++=..++..+-+|+|++.- |....+ .|. -.+...-.+=+-+..++.+.+.-. . -.+
T Consensus 82 PefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~~ 161 (506)
T PRK09950 82 PEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFHV 161 (506)
T ss_pred CCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 345556667788899999999753 333221 121 012223333333444444443333 1 112
Q ss_pred CCcccCChHHHHHHhcCCc----cceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHH
Q 037598 89 PGKRFDRYPELGEHCFGPR----FGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHL 164 (360)
Q Consensus 89 ~~~~~~sy~~l~~~~~G~~----~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~l 164 (360)
.+.+..+.++..+-++|+| .|+ ++|+..++...+....-+-.....++.-+....+-.+.......+++...++.
T Consensus 162 rk~~pl~iss~~~pllG~~~~g~~G~-~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~vi~~if 240 (506)
T PRK09950 162 RKNKGLSLSGIIAAITGVKPQGPWGR-LVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNNFTVQAFVILLSGVIF 240 (506)
T ss_pred hcCCCCchHHhhHhhcCCCCCCcchH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 2333457778777777753 455 67877777776666666666666666666665442222222222333333444
Q ss_pred HhhcCCCC-CchhHHHHHHHHHHHHH
Q 037598 165 VLSQTPNF-NSLKGVSLLAAVMSICY 189 (360)
Q Consensus 165 pl~~~~~l-~~l~~~s~~~~~~~~~~ 189 (360)
.++....+ |.++++|.+.....+..
T Consensus 241 ~~S~~~Gl~kGIk~LS~~N~~la~~l 266 (506)
T PRK09950 241 CLSSYIGIDNGLQRLSKMVGWGAFLF 266 (506)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56666666 55777777776655443
No 100
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=72.73 E-value=38 Score=33.51 Aligned_cols=162 Identities=12% Similarity=0.060 Sum_probs=82.7
Q ss_pred CCchHHHHHHHHHhhhhhhhhchH----HHHHHh---hCh--------hHHHHHHHHHHHHHHHHHHHHhhc----cccc
Q 037598 28 RKAKWWYSAFHNVTAMVGAGVLGL----PFAFSQ---LGW--------GAGFAAIFGSWAITFYSLWQLVEL----HEVV 88 (360)
Q Consensus 28 ~~~s~~~~~~~l~~~~vG~GiL~l----P~~f~~---~G~--------~~g~i~ll~~~~~~~~t~~~l~~~----~~~~ 88 (360)
+.-|.++=..++..+-+|+|++.- |....+ .|. -.+...-.+=+-+..++.+.+.-. ..+.
T Consensus 84 Pefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y~ 163 (504)
T PRK03356 84 PEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFFV 163 (504)
T ss_pred CCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHh
Confidence 345556666788899999999754 433221 121 012222333233444444444333 1111
Q ss_pred CCcccCChHHHHHHhcCCc-----cceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHH
Q 037598 89 PGKRFDRYPELGEHCFGPR-----FGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLH 163 (360)
Q Consensus 89 ~~~~~~sy~~l~~~~~G~~-----~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~ 163 (360)
.+.+..+.++..+-++|+| .|+ ++|+..++...+....-+-.....+..-++...+-.+.......+++...++
T Consensus 164 ~~~p~l~iss~~~pllG~~~~~g~~G~-~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~~i~~i 242 (504)
T PRK03356 164 RKMDVIRPSSTLVPLVGEKHAKGLFGT-IVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIIL 242 (504)
T ss_pred cCCCcccHHHHHHHHcCCCcccCchHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 2222135677777777732 455 6777777766666665666666666666666554222222222222333334
Q ss_pred HHhhcCCCC-CchhHHHHHHHHHHHHHH
Q 037598 164 LVLSQTPNF-NSLKGVSLLAAVMSICYS 190 (360)
Q Consensus 164 lpl~~~~~l-~~l~~~s~~~~~~~~~~~ 190 (360)
+.++....+ |.++++|.+.....+..+
T Consensus 243 f~~S~~~Gl~kGIk~LS~~N~~la~~ll 270 (504)
T PRK03356 243 NAICVACGLQKGVRIASDVRSYLSFLML 270 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555 446677766666554433
No 101
>PRK09928 choline transport protein BetT; Provisional
Probab=71.80 E-value=31 Score=35.32 Aligned_cols=163 Identities=14% Similarity=0.052 Sum_probs=80.6
Q ss_pred cCCchHHHHHHHHHhhhhhhhhchH----HHHHH-h--hC---h----hHHHHHHHHHHHHHHHHHHHHhhcc---cccC
Q 037598 27 SRKAKWWYSAFHNVTAMVGAGVLGL----PFAFS-Q--LG---W----GAGFAAIFGSWAITFYSLWQLVELH---EVVP 89 (360)
Q Consensus 27 ~~~~s~~~~~~~l~~~~vG~GiL~l----P~~f~-~--~G---~----~~g~i~ll~~~~~~~~t~~~l~~~~---~~~~ 89 (360)
++.-|.++=+.++..+-+|+|++.- |..-. . .| - -.+.....+=+-+..++.+.+.-.. -.+.
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr 169 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYR 169 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 3445556667788999999999753 33321 1 12 1 1233334443444445544444431 1111
Q ss_pred CcccCChHHHHHHhcCCc----cceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHH
Q 037598 90 GKRFDRYPELGEHCFGPR----FGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLV 165 (360)
Q Consensus 90 ~~~~~sy~~l~~~~~G~~----~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lp 165 (360)
.++..+..+..+-++|+| +|+ ++|++.++...+....-+-+....++.-+....+-.........+++...++..
T Consensus 170 ~~~pl~issal~pllG~ri~G~~G~-~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~~~~q~~ii~vi~~i~~ 248 (679)
T PRK09928 170 YNLPLTIRSALYPIFGKRINGPIGH-SVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPESLAAQAALIALSVIIAT 248 (679)
T ss_pred CCCCCchhHhhhhhcCCCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHH
Confidence 112245566555555532 666 577766666655555555555555555555544321112222222333333444
Q ss_pred hhcCCCC-CchhHHHHHHHHHHHHHH
Q 037598 166 LSQTPNF-NSLKGVSLLAAVMSICYS 190 (360)
Q Consensus 166 l~~~~~l-~~l~~~s~~~~~~~~~~~ 190 (360)
++....+ |.++++|-+...+.+..+
T Consensus 249 ~S~~sGl~KGIk~LS~lN~~La~~Ll 274 (679)
T PRK09928 249 ISVTSGVNKGIRVLSELNVLLALGLI 274 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555 556677776666544433
No 102
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=70.65 E-value=37 Score=33.10 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=78.6
Q ss_pred CCchHHHHHHHHHhhhhhhhhchH----HHHHH-h--hCh----h-----HHHHHHHHHHHHHHHHHHHHhhc---cccc
Q 037598 28 RKAKWWYSAFHNVTAMVGAGVLGL----PFAFS-Q--LGW----G-----AGFAAIFGSWAITFYSLWQLVEL---HEVV 88 (360)
Q Consensus 28 ~~~s~~~~~~~l~~~~vG~GiL~l----P~~f~-~--~G~----~-----~g~i~ll~~~~~~~~t~~~l~~~---~~~~ 88 (360)
++-|.++=+.++..+-+|+|++.- |.... . .|. . .+...-.+=+-+..++.+.+.-. .-.+
T Consensus 35 PefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~~ 114 (453)
T TIGR00842 35 PEFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYFHV 114 (453)
T ss_pred CCCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhhe
Confidence 345556667788899999999753 33322 1 111 0 12222223233334444443333 1112
Q ss_pred CCcccCChHHHHHHhcCCc----cceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHH
Q 037598 89 PGKRFDRYPELGEHCFGPR----FGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHL 164 (360)
Q Consensus 89 ~~~~~~sy~~l~~~~~G~~----~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~l 164 (360)
.+++..+.++..+-++|+| .|+ ++|+..++...+....-+-.....+..-+....+-.+.......+++....+.
T Consensus 115 rk~~~~~iss~~~pllG~~~~g~~g~-~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi~~~~~~~~~ii~~i~~~f 193 (453)
T TIGR00842 115 RKGLPLRLSSALVPLLGERVNGPIGK-AIDIMALVATLFGVATSLGLGAPQINAGLSALFGIPDSFWLQALIILCVTALA 193 (453)
T ss_pred ecCCCCchhhhhhcccCCcccCccHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 2233456777777777643 455 57776666666665555556666666666555432211111222222222233
Q ss_pred HhhcCCCC-CchhHHHHHHHHHHHH
Q 037598 165 VLSQTPNF-NSLKGVSLLAAVMSIC 188 (360)
Q Consensus 165 pl~~~~~l-~~l~~~s~~~~~~~~~ 188 (360)
..+....+ |.++++|.+.....+.
T Consensus 194 ~~S~~~Gl~kGIk~LS~~n~~l~~~ 218 (453)
T TIGR00842 194 CISVASGVGKGIKILSNINMALAFL 218 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455 4456666665554443
No 103
>PHA02764 hypothetical protein; Provisional
Probab=69.90 E-value=14 Score=34.03 Aligned_cols=81 Identities=15% Similarity=0.025 Sum_probs=47.3
Q ss_pred cCCchHHHHHHHHH-hhhhhhhhchHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHh
Q 037598 27 SRKAKWWYSAFHNV-TAMVGAGVLGLPFAFSQL--GWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHC 103 (360)
Q Consensus 27 ~~~~s~~~~~~~l~-~~~vG~GiL~lP~~f~~~--G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~ 103 (360)
-|..+.+.+.+.-+ ....|.+ .+.|+-++.. |.. .....++.++++...+.+..+.....|... .-....+++
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~-Is~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAG--GdYVYISRA 86 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSG-ISYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNG--GDYAYIRTA 86 (399)
T ss_pred eeeccHHHHHHHHHHhhccchh-HHHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ceEEEhHHh
Confidence 46678888888444 4444443 3556644433 433 345566667777777777777644444321 122336778
Q ss_pred cCCcccee
Q 037598 104 FGPRFGYW 111 (360)
Q Consensus 104 ~G~~~g~~ 111 (360)
+||++|..
T Consensus 87 FGP~~GFL 94 (399)
T PHA02764 87 FSSKFYTI 94 (399)
T ss_pred hCccHHHH
Confidence 99877764
No 104
>PRK00701 manganese transport protein MntH; Reviewed
Probab=68.23 E-value=90 Score=30.40 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=21.4
Q ss_pred ChHHHHHHhcCCccceeehhHHHHHHHhhhhheeee
Q 037598 95 RYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMV 130 (360)
Q Consensus 95 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i 130 (360)
+..|+.++-+|+++. ++.++...+.+.++..+-++
T Consensus 95 ~l~~~ir~~~~~~~~-~~~~~~~~l~~~~~~~~e~~ 129 (439)
T PRK00701 95 DLAQACRDRYPRPVV-WFLWIQAELAIMATDLAEVI 129 (439)
T ss_pred CHHHHHHHHCCchHH-HHHHHHHHHHHHHHHHHHHH
Confidence 789999999997554 34444444445555444333
No 105
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=63.08 E-value=44 Score=33.06 Aligned_cols=153 Identities=20% Similarity=0.191 Sum_probs=76.5
Q ss_pred chHHHHHHHHHhhhhhhhhchHH----HHHH-hh--Chh--------HHHHHHHHHHHHHHHHHHHHhhc-----cccc-
Q 037598 30 AKWWYSAFHNVTAMVGAGVLGLP----FAFS-QL--GWG--------AGFAAIFGSWAITFYSLWQLVEL-----HEVV- 88 (360)
Q Consensus 30 ~s~~~~~~~l~~~~vG~GiL~lP----~~f~-~~--G~~--------~g~i~ll~~~~~~~~t~~~l~~~-----~~~~- 88 (360)
-+.++=..++..+-+|+|++.-+ .... +- |-- .+.....+-+.+..++.+.+.-. +.++
T Consensus 88 fs~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~~rk~ 167 (537)
T COG1292 88 FSTLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFHYRKG 167 (537)
T ss_pred cchhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheeeEecC
Confidence 45556667888999999987543 2222 11 111 23344444444444444444433 1111
Q ss_pred -CCc-ccCChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHH--HH
Q 037598 89 -PGK-RFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACL--HL 164 (360)
Q Consensus 89 -~~~-~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i--~l 164 (360)
+.. +..=|+-+.++.-|+ +|+ .+|++-++..++....-+-+....+..-++...+-. .+.....++.+++ ..
T Consensus 168 ~pl~lss~l~Pllg~~~~G~-~G~-~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~gip--~~~~~q~~iI~vi~~~~ 243 (537)
T COG1292 168 LPLLLSSALYPLLGERIKGP-IGH-AVDILAIIATLFGIATSLGLGALQLTAGLSYLFGIP--NSFAVQAIIIAVITALF 243 (537)
T ss_pred CCchhhhhhhhhhcccccCc-cch-hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHH
Confidence 110 111245556665574 777 678777776666655566666666666655544321 2222333332222 33
Q ss_pred HhhcCCCC-CchhHHHHHHHHHH
Q 037598 165 VLSQTPNF-NSLKGVSLLAAVMS 186 (360)
Q Consensus 165 pl~~~~~l-~~l~~~s~~~~~~~ 186 (360)
-.+....+ |.++..|-+.....
T Consensus 244 ~~S~~sGv~KGIr~LS~~n~~la 266 (537)
T COG1292 244 TISVWSGLDKGIRVLSNINMVLA 266 (537)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444 55566665555443
No 106
>PLN02680 carbon-monoxide oxygenase
Probab=59.33 E-value=1.3e+02 Score=26.56 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=47.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccH
Q 037598 258 PMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPV 326 (360)
Q Consensus 258 ~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 326 (360)
+.+|.+-...-...++...+|+.....+.+ +.++-+-++-+.|+-....+++.++.+..+....+|.
T Consensus 77 ~~~K~iH~~L~~lA~~l~vvGl~avfk~hn--~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 77 NLKKLVHLTLQFLAFCLSLIGVWAALKFHN--EKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 444667777777777778888866555544 3344444455689888889999999998888888885
No 107
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=53.89 E-value=23 Score=23.02 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=25.2
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhccCCCch
Q 037598 258 PMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVE 290 (360)
Q Consensus 258 ~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~ 290 (360)
+.-+-+.+-..+.+++|++.|+.-+..+.++..
T Consensus 20 NsF~fViik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 20 NSFWFVIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 333677788899999999999987777665443
No 108
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=52.06 E-value=2.2e+02 Score=27.76 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=29.2
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhc-hHHHHHHhhCh
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVL-GLPFAFSQLGW 60 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL-~lP~~f~~~G~ 60 (360)
+++..|.+|+.+.-+.+.+|+|=+ +..-+.+..|.
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP 94 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP 94 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC
Confidence 355688999999999999999865 58888887774
No 109
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=44.87 E-value=1.1e+02 Score=23.64 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhhhhhhhhchHHHH
Q 037598 31 KWWYSAFHNVTAMVGAGVLGLPFA 54 (360)
Q Consensus 31 s~~~~~~~l~~~~vG~GiL~lP~~ 54 (360)
.+...+..+.-.++|+..+.+...
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l 63 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLL 63 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555666666665544
No 110
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=43.69 E-value=3e+02 Score=26.33 Aligned_cols=28 Identities=14% Similarity=0.020 Sum_probs=17.9
Q ss_pred ChHHHHHHhcCCccceeehhHHHHHHHhh
Q 037598 95 RYPELGEHCFGPRFGYWFVMPQQMLVQIA 123 (360)
Q Consensus 95 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g 123 (360)
+..|+.++-+++ +.++..++...+...+
T Consensus 65 ~l~~~~r~~~~~-~~~~~~~~~~~l~ii~ 92 (390)
T TIGR01197 65 DLAEVCREHYPK-VPRITLWILAELAIIA 92 (390)
T ss_pred CHHHHHHHHCCC-chHHHHHHHHHHHHHH
Confidence 789999999985 5555555444333333
No 111
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=37.56 E-value=41 Score=21.21 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhccCCC
Q 037598 261 KGVVVAYVIVAFCYLSVGISGYWAFGQY 288 (360)
Q Consensus 261 ~~~~~~~~i~~~~Y~~~g~~gy~~fG~~ 288 (360)
.+..+++.+..++.-+.|..-|.+||.-
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 4556666667776667777777788864
No 112
>CHL00020 psbN photosystem II protein N
Probab=36.05 E-value=38 Score=21.05 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhccCCC
Q 037598 262 GVVVAYVIVAFCYLSVGISGYWAFGQY 288 (360)
Q Consensus 262 ~~~~~~~i~~~~Y~~~g~~gy~~fG~~ 288 (360)
+...++.+..++.-+.|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 455566666666666666667788864
No 113
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=35.29 E-value=71 Score=23.18 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHhhhhhccCCCch
Q 037598 226 GLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVE 290 (360)
Q Consensus 226 ~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~ 290 (360)
..|+....-.|.....+..+.- .+|.++. +|++.+ +..+...-+++|++.|..||...+
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~----s~~~~~~-wRalSi-i~FIlG~vl~lGilifs~y~~C~~ 74 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNT----SNVTDYV-WRALSV-TCFIVGAVLLLGLFVFSMYRKCSG 74 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccC----CCCcchh-HHHHHH-HHHHHHHHHHHHHHHHHHhcccCC
Confidence 3455555555555555666543 3566644 454442 333444456778888998884443
No 114
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=34.98 E-value=47 Score=33.91 Aligned_cols=84 Identities=10% Similarity=0.060 Sum_probs=45.9
Q ss_pred HHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHhHhhhcC-CCCCCccccccC-CccchhHhhHHHHHHHHHHHhcC-Cce
Q 037598 163 HLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKKG-IHHRPESYGVRS-HTEVGKAFDFLNGLGTVAFAFAG-HSV 239 (360)
Q Consensus 163 ~lpl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fsf~~-~~~ 239 (360)
+..+++.|.+|+.+.+..+...+-...+++.++..+.-+ ..+ +..+-..+ .....+..-...|...+.|++.. +..
T Consensus 226 iv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~-Gi~~~l~~~~~kL~~~~vW~dA~~QiffSlsi~~G~ 304 (629)
T KOG3660|consen 226 IVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGD-GINFYLTPDWTKLLDPQVWGDAATQIFFSLSIGFGG 304 (629)
T ss_pred HHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHH-HHHHHHhhhhHhhcChhhHHHHHHhHHHhHHHHHhh
Confidence 457888899999888888877766666666666655432 111 11111111 11111222334567777777755 555
Q ss_pred ehhhhccC
Q 037598 240 VLEIQATI 247 (360)
Q Consensus 240 ~~~i~~~m 247 (360)
+..+.+..
T Consensus 305 li~laSyn 312 (629)
T KOG3660|consen 305 LIALASYN 312 (629)
T ss_pred hheeeeee
Confidence 55555543
No 115
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=34.40 E-value=50 Score=20.58 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhccCCC
Q 037598 262 GVVVAYVIVAFCYLSVGISGYWAFGQY 288 (360)
Q Consensus 262 ~~~~~~~i~~~~Y~~~g~~gy~~fG~~ 288 (360)
+...++.+..++-.+.|..-|.+||..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 344566666666677777778888863
No 116
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=33.72 E-value=2.9e+02 Score=24.36 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=53.9
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHH
Q 037598 254 PSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVF 327 (360)
Q Consensus 254 p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 327 (360)
+++++.+|.+-...=++.+...++|+.....+-+... +-+-++-+.|.-..+.+++.++-...|--.++|+.
T Consensus 82 ~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~--i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~ 153 (245)
T KOG1619|consen 82 YTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG--IANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGS 153 (245)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--ccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4445666888888888888888888877777765444 33333446898888899999999998888888863
No 117
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=25.08 E-value=2.1e+02 Score=23.44 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=47.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccH
Q 037598 258 PMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPV 326 (360)
Q Consensus 258 ~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 326 (360)
+.+|.+-...-...++..++|+.....+-++. +..+-++-+.|.-.+..+++.++.+..+...++|.
T Consensus 45 ~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 45 LLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 33366666777777777777776666664433 33333445689988999999999999999988886
No 118
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=23.08 E-value=1.1e+02 Score=23.12 Aligned_cols=11 Identities=36% Similarity=0.368 Sum_probs=6.5
Q ss_pred hhhhhchHHHH
Q 037598 44 VGAGVLGLPFA 54 (360)
Q Consensus 44 vG~GiL~lP~~ 54 (360)
+|.|++.++..
T Consensus 9 Iglgv~~~Gg~ 19 (104)
T PF11460_consen 9 IGLGVFLLGGL 19 (104)
T ss_pred ecHHHHHHHHH
Confidence 56666666544
No 119
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.34 E-value=1.8e+02 Score=23.51 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccH
Q 037598 261 KGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPV 326 (360)
Q Consensus 261 ~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 326 (360)
|.+-...-...++..++|+.....+-++ ...-+-++-+.|.-.+..+++.++.+..+....+|.
T Consensus 41 k~iH~~l~~la~~~~vvGl~avf~~~~~--~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 41 KAVHLTLHLVALVLGIVGIYAAFKFHNE--VGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5566677777777777887554444443 333334444689888888899999988887778886
No 120
>PHA02898 virion envelope protein; Provisional
Probab=21.67 E-value=1.4e+02 Score=21.74 Aligned_cols=62 Identities=13% Similarity=0.267 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHhhhhhccCCCchhhH
Q 037598 225 NGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDV 293 (360)
Q Consensus 225 ~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~i 293 (360)
...|++..+-.|.....+..+. ++|++. .+|++. .+..+...-+++|++-|..||....++.
T Consensus 15 li~GIiLL~~ACIfAfidfSK~-----~~~~~~-~wRalS-ii~FIlgivl~lG~~ifs~y~r~C~~~~ 76 (92)
T PHA02898 15 VAFGIILLIVACICAYIELSKS-----EKPADS-ALRSIS-IISFILAIILILGIIFFKGYNMFCGGNT 76 (92)
T ss_pred HHHHHHHHHHHHHHheehhhcC-----CCcchh-HHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 4455555555566666666664 456553 345443 2333444456778888888885555433
No 121
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.43 E-value=2.7e+02 Score=22.41 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=46.2
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccH
Q 037598 260 WKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPV 326 (360)
Q Consensus 260 ~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 326 (360)
.|.+-...-...++-.++|+..-..+-++ .+.-+-++.+.|.-.+..+++.++.+..+....+|.
T Consensus 40 ~k~~H~~L~~la~~~~~~Gl~av~~~h~~--~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 40 TKILHGLLHIMALVISLVGLVAVFDYHQA--NGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35566777777777777777665555443 333333455689888889999999999998888885
No 122
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.01 E-value=5.1e+02 Score=21.81 Aligned_cols=66 Identities=15% Similarity=0.297 Sum_probs=47.7
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccH
Q 037598 259 MWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPV 326 (360)
Q Consensus 259 ~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 326 (360)
.+|.+-...-...++...+|+.....+-++ ..+-+.++-+.|.-.....++.++.+..+....+|.
T Consensus 69 ~~K~~H~~L~~~Al~~~vvGl~avf~~hn~--~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 69 PWKLLHAGLLLLAFILTVIGLCAVFNFHNV--HHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 346666777777777778888666666544 344444445689888888899999999998888885
No 123
>PHA03048 IMV membrane protein; Provisional
Probab=20.82 E-value=1.8e+02 Score=21.29 Aligned_cols=59 Identities=14% Similarity=0.256 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHhhhhhccCCCchh
Q 037598 225 NGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVED 291 (360)
Q Consensus 225 ~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~ 291 (360)
...|++..+-.|.....+..+ .+|+. +.+|++. .+..+...-+++|++-|..||....+
T Consensus 15 li~GIiLL~~aCIfAfidfsK------~k~~~-~~wRals-ii~FIlgivl~lG~~ifsmy~r~C~~ 73 (93)
T PHA03048 15 LIGGIILLAASCIFAFVDFSK------NKATV-TVWRALS-GIAFVLGIVMTIGMLIYSMWGRYCTP 73 (93)
T ss_pred HHHHHHHHHHHHHHhhhhhhc------CCCcc-hhHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 344555555555555555555 34544 4445544 33344445677888889999865544
No 124
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=20.42 E-value=1.5e+02 Score=29.36 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=38.8
Q ss_pred hhheeeeecccchHHHHHHhccC----CcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 037598 124 TDIVYMVTGGKSLMKFVELLDHN----VENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAV 184 (360)
Q Consensus 124 ~~~~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~ 184 (360)
.+..+++...|.....+.....+ .+...+..|.++..++...+....+++.++-++.++-+
T Consensus 401 l~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~l 465 (485)
T PF02028_consen 401 LIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGL 465 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34446677788877777665532 12345667777777776666666777777777766655
Done!