Query 037598
Match_columns 360
No_of_seqs 134 out of 1398
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 03:30:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 2E-14 7E-19 138.0 14.5 291 26-332 6-303 (445)
2 3gia_A Uncharacterized protein 99.4 1.1E-12 3.8E-17 125.8 14.9 243 26-286 4-248 (444)
3 4djk_A Probable glutamate/gamm 99.2 1.1E-09 3.7E-14 106.8 19.3 289 25-330 8-316 (511)
4 2jln_A MHP1; hydantoin, transp 98.3 3.8E-05 1.3E-09 74.5 18.0 293 26-336 23-332 (501)
5 3dh4_A Sodium/glucose cotransp 96.1 0.41 1.4E-05 46.3 18.6 153 26-191 18-172 (530)
6 2xq2_A Sodium/glucose cotransp 95.9 0.23 7.9E-06 48.9 16.0 152 26-190 47-200 (593)
7 2a65_A Leutaa, Na(+):neurotran 95.0 1.8 6.3E-05 41.5 18.6 117 165-288 180-309 (519)
8 4ain_A Glycine betaine transpo 66.3 8 0.00027 37.1 5.6 155 27-184 93-271 (539)
9 2wsw_A BCCT family betaine/car 63.0 41 0.0014 32.0 9.8 163 26-190 87-275 (509)
10 3gia_A Uncharacterized protein 17.3 2.3E+02 0.0078 25.7 6.4 47 95-142 259-305 (444)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.57 E-value=2e-14 Score=137.98 Aligned_cols=291 Identities=15% Similarity=0.096 Sum_probs=173.6
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcC
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFG 105 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G 105 (360)
++|+.+.++..+..+++++|+|++.+|....+.|. .+++..++.+++....+..+.|.....|... +..+..++.+|
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G 82 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCFG 82 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHSC
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHcC
Confidence 46789999999999999999999999999888997 4788888899999999999999866566543 67788999999
Q ss_pred CccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 037598 106 PRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVM 185 (360)
Q Consensus 106 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~ 185 (360)
|++|.. ......+........+....++.+..+++... .++....+. +..++.+-....+..+...+++.+....
T Consensus 83 ~~~g~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~in~~g~~~~~~~~~~~~~~ 157 (445)
T 3l1l_A 83 PFLGYQ-TNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---DPWVLTITC-VVVLWIFVLLNIVGPKMITRVQAVATVL 157 (445)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---SHHHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---ccHHHHHHH-HHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 888764 44444444444444444444444443322210 011111111 1111222222234556666665555444
Q ss_pred HHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhH
Q 037598 186 SICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVV 265 (360)
Q Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~ 265 (360)
.+..++++++.......++ .....+. .....++.++..++....|+|.|.+......+|+ |||+| +.+|++..
T Consensus 158 ~i~~~~~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~ 230 (445)
T 3l1l_A 158 ALIPIVGIAVFGWFWFRGE-TYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIG 230 (445)
T ss_dssp HHHHHHHHHHTTSTTCCCC-CCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHH
Confidence 3333322222222211111 1111111 1112236678899999999999999999999999 99975 68899999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCch----hh---HhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Q 037598 266 AYVIVAFCYLSVGISGYWAFGQYVE----DD---VLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIES 332 (360)
Q Consensus 266 ~~~i~~~~Y~~~g~~gy~~fG~~~~----~~---il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 332 (360)
+..++.++|++.........+.+.. .+ +..... .++...+..+...+..+.+.--..+...+.+..
T Consensus 231 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~ 303 (445)
T 3l1l_A 231 GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKA 303 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776666553221 11 111211 234444555555555555554444444444433
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.44 E-value=1.1e-12 Score=125.83 Aligned_cols=243 Identities=10% Similarity=0.072 Sum_probs=157.8
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLPF-AFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~-~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
++|+.+.++..+..+++++|+|++..|. ....+|. .+++.+++.+++.......+.|.....|... ...+.+++.+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G--g~y~~~~~~~ 80 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA--GPIAFIHKAI 80 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT--THHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--cHHHhHHHHh
Confidence 4688999999999999999999998764 4566776 6788888999999999999999976666543 6778899999
Q ss_pred CCcc-ceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 105 GPRF-GYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 105 G~~~-g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
||++ +.++ .....+........+....++.+..+++. ..+........+...+.+-....+..+...++.....
T Consensus 81 G~~~~~g~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~ 155 (444)
T 3gia_A 81 GDNIITGAL-SILLWMSYVISIALFAKGFAGYFLPLINA----PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIV 155 (444)
T ss_dssp CSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9863 2222 23333344444444555555555544322 1100011111112222222333346666666665555
Q ss_pred HHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhh
Q 037598 184 VMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGV 263 (360)
Q Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~ 263 (360)
...+..++++++..+....++ +. .+...+.++.++..++....|+|.|.+......+|+ |||+| +.+|++
T Consensus 156 ~~~i~~~~~~ii~~~~~~~~~-~~----~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r-~ip~ai 225 (444)
T 3gia_A 156 LVKLLILGLFIFAGLITIHPS-YV----IPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPKK-NVPRAI 225 (444)
T ss_dssp HHHHHHHHHHHHHHHHHCCGG-GT----SCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcChh-hc----CCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCccc-chhHHH
Confidence 544443333333222222111 11 112335567788999999999999999999999999 99975 688999
Q ss_pred hHHHHHHHHHHHHHHhhhhhccC
Q 037598 264 VVAYVIVAFCYLSVGISGYWAFG 286 (360)
Q Consensus 264 ~~~~~i~~~~Y~~~g~~gy~~fG 286 (360)
..+..++.++|++..+......+
T Consensus 226 ~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 226 FISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999998876655554
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.18 E-value=1.1e-09 Score=106.82 Aligned_cols=289 Identities=9% Similarity=0.050 Sum_probs=153.2
Q ss_pred cccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHhhccc--ccCCcccCChHHHHH
Q 037598 25 TASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAIT-FYSLWQLVELHE--VVPGKRFDRYPELGE 101 (360)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~-~~t~~~l~~~~~--~~~~~~~~sy~~l~~ 101 (360)
+.+|+.+.++..+..++.++| +..+|. ....|.. .++..++.+++. ...+..+.|... ..| .. .....++
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G--G~y~~~~ 80 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG--GVFAWVS 80 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC--ChhhhHH
Confidence 356889999999999999985 667775 4667753 344444444443 336777888766 666 43 7788899
Q ss_pred HhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHH--HHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHH
Q 037598 102 HCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFV--ELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVS 179 (360)
Q Consensus 102 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s 179 (360)
+.+||++|. +......+.......++....++.+..++ +... ..++...... +..++.+-....+..+...++.
T Consensus 81 ~~~g~~~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~-~~~~~~~~~in~~g~~~~~~~~ 156 (511)
T 4djk_A 81 NTLGPRWGF-AAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN--EDPITKTIAA-LIILWALALTQFGGTKYTARIA 156 (511)
T ss_dssp HHHCHHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT--SCSSHHHHHH-HHHHHHHHHHHHTCSSSHHHHT
T ss_pred hhcCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--cCcHHHHHHH-HHHHHHHHHHHHhChHHHHHHH
Confidence 999998875 34444444444444444444444433221 1110 0111111112 2222222233334666666666
Q ss_pred HHHHHHHHHH-HHHHHhHhh---hcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCC
Q 037598 180 LLAAVMSICY-SMVALITSI---KKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPS 255 (360)
Q Consensus 180 ~~~~~~~~~~-~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~ 255 (360)
.+.....+.. +++++...+ ..+.+. +.+.......+.....+...++...+|+|.|.+......+|+ |||+
T Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~----k~P~ 231 (511)
T 4djk_A 157 KVGFFAGILLPAFILIALAAIYLHSGAPV-AIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEM----SNPG 231 (511)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTC-------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSS----SCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhc----cCcc
Confidence 5543321111 111111111 111111 101000001111111234466788899999999999999999 9998
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHhhhhhccCCCchh---h-------Hhhccc-CchHHHHHHHHHHHHHHHhhhhcccc
Q 037598 256 KKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVED---D-------VLISLR-KPAWLIAIANFMVFFHVVGSYQVFAM 324 (360)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~---~-------il~~~~-~~~~~~~~~~~~~~i~~~~s~pl~~~ 324 (360)
| +.+|++..+..++.++|++..+......+++... . +..... ...+...+..+...++.+.+.--.+.
T Consensus 232 k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (511)
T 4djk_A 232 R-DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIV 310 (511)
T ss_dssp T-THHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred c-chhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 7899999999999999999888766666543211 1 111221 02455556666666666655444444
Q ss_pred cHHHHH
Q 037598 325 PVFDMI 330 (360)
Q Consensus 325 p~~~~~ 330 (360)
...+.+
T Consensus 311 ~~sR~l 316 (511)
T 4djk_A 311 GPSRGM 316 (511)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 433333
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.27 E-value=3.8e-05 Score=74.48 Aligned_cols=293 Identities=12% Similarity=0.068 Sum_probs=156.4
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchHHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQ-LGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~-~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
++|+.++++....-++..++.+.+.+...+.. .++..+++.+++..++....+-+....-. +.+ .++.++.+..|
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~-~~G---l~~~v~~R~~F 98 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAI-RWG---INFTVAARMPF 98 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHH-HHC---CCHHHHTTTTS
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHh-hcC---CChhhhhHhhc
Confidence 34667888888887888887777777655554 23344454444444444433333333322 223 37999999999
Q ss_pred CCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 037598 105 GPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAV 184 (360)
Q Consensus 105 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~ 184 (360)
|++ |..+..+...+.++|....-....++.+..++....+. .+.....+++.++.+++.+. ..+.++++..+...
T Consensus 99 G~~-Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~---~~~~v~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p 173 (501)
T 2jln_A 99 GIR-GSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF---TNLPLWIVIFGAIQVVTTFY-GITFIRWMNVFASP 173 (501)
T ss_dssp CTT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---chHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 975 55567777777777776666666777777776543221 11344556666777777744 77777777777665
Q ss_pred HHHHHHHHHHhHhhhc-CCC-CCCccccccCCccchhHhhHHHHHHHH-HHHhcCCceehhhhccCCCCCCCCCC-----
Q 037598 185 MSICYSMVALITSIKK-GIH-HRPESYGVRSHTEVGKAFDFLNGLGTV-AFAFAGHSVVLEIQATIPSTPEVPSK----- 256 (360)
Q Consensus 185 ~~~~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fsf~~~~~~~~i~~~m~~~~~~p~~----- 256 (360)
..+..++...+..+.+ +.. . +.. ..++ ....+.+..++... .+.-....+.+...+++ |++++
T Consensus 174 ~~~i~~i~~~~~~l~~~g~~~~-~~~-~~~~---~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~----~~~~~~~~~~ 244 (501)
T 2jln_A 174 VLLAMGVYMVYLMLDGADVSLG-EVM-SMGG---ENPGMPFSTAIMIFVGGWIAVVVSIHDIVKEC----KVDPNASREG 244 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHH-HHT-TCCC---SSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTB----CCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcch-hhh-ccCC---ccchHHHHHHHHHHHHHHHHHHhccCcccccC----CCCccccccc
Confidence 4444333333322222 210 0 000 0000 11123344433332 11112236678888888 55544
Q ss_pred ----CC-cchhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhc-ccCchHHHHHHH-HHHHHHHHhhhhc-ccccHHH
Q 037598 257 ----KP-MWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLIS-LRKPAWLIAIAN-FMVFFHVVGSYQV-FAMPVFD 328 (360)
Q Consensus 257 ----~~-~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~-~~~~~~~~~~~~-~~~~i~~~~s~pl-~~~p~~~ 328 (360)
++ .......+..+...+..++|+......+.+....++.. ++...+....+. +.+.++.+.+--. ..++.-.
T Consensus 245 ~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~ 324 (501)
T 2jln_A 245 QTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAY 324 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 11 11233345555555555566543333343333344444 332222133444 5566666555554 6778877
Q ss_pred HHHHHHhh
Q 037598 329 MIESYLVQ 336 (360)
Q Consensus 329 ~~~~~~~~ 336 (360)
.+.+...+
T Consensus 325 ~l~~~~~~ 332 (501)
T 2jln_A 325 TLCSTFPR 332 (501)
T ss_dssp HHHHHSTT
T ss_pred HHHHhCcc
Confidence 77777643
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=96.07 E-value=0.41 Score=46.34 Aligned_cols=153 Identities=15% Similarity=0.154 Sum_probs=82.6
Q ss_pred ccCCchHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
..|+.+++...+.+..+.+++.. +++|-...+.|+......... ++.....+..+..... +.+ ..|..|.-++-|
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~-~~~--~~T~~e~l~~Rf 93 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFI-EKG--IYTIPEFVEKRF 93 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHH-HTT--CCSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHH-HcC--CccHHHHHHHHc
Confidence 46789999999999988887755 689998888887532211111 1111112222222222 222 459999999999
Q ss_pred CCccceeehhHHHHH-HHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 105 GPRFGYWFVMPQQML-VQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 105 G~~~g~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
|++. +.+..+...+ ..+..+.+-+...+. .+.... ..+....+++..+++...+....++...+.-.+..
T Consensus 94 g~~~-~~~~a~~~l~~~~~~~~~~~l~~~~~----~~~~~~----Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~ 164 (530)
T 3dh4_A 94 NKKL-KTILAVFWISLYIFVNLTSVLYLGGL----ALETIL----GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQV 164 (530)
T ss_dssp CHHH-HHHHHHHHHHHHHHTHHHHHHHHHHH----HHHHHT----TCCHHHHHHHHHHHHHHTTC------CCSHHHHHH
T ss_pred CcHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh----CCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9764 3344332222 111111111111122 222222 24556667777777788899999999998888887
Q ss_pred HHHHHHHH
Q 037598 184 VMSICYSM 191 (360)
Q Consensus 184 ~~~~~~~~ 191 (360)
+..+...+
T Consensus 165 ~im~~g~~ 172 (530)
T 3dh4_A 165 FFLVLGGF 172 (530)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76554433
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=95.87 E-value=0.23 Score=48.86 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=78.9
Q ss_pred ccCCchHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhc
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGV-LGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCF 104 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~Gi-L~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~ 104 (360)
..|+.+++...+.+..+.+++.. ++.|....+.|+......+. .++........+..-.. +.+ ..|..|.-++-|
T Consensus 47 aGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~-r~~--~~T~~e~l~~Rf 122 (593)
T 2xq2_A 47 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFI-EKG--IYTIPEFVEKRF 122 (593)
T ss_dssp ----CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHH-HTT--CCSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHH-hCC--CCCcHHHHHHHc
Confidence 35788999999999877777655 68998888888743221111 11111111222222222 222 359999999999
Q ss_pred CCccceeehhHHHHH-HHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 037598 105 GPRFGYWFVMPQQML-VQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183 (360)
Q Consensus 105 G~~~g~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~ 183 (360)
|++. +.+..+...+ ..+.....-+...+..++.++ .++.....++..+++...+..-.++...+.-.+..
T Consensus 123 g~~~-~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~--------Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~ 193 (593)
T 2xq2_A 123 NKKL-KTILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQV 193 (593)
T ss_dssp CHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred cCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9754 3333332221 111111111112222233322 13455556667777788888889999888888777
Q ss_pred HHHHHHH
Q 037598 184 VMSICYS 190 (360)
Q Consensus 184 ~~~~~~~ 190 (360)
+..+...
T Consensus 194 iiml~~~ 200 (593)
T 2xq2_A 194 FFLVLGG 200 (593)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=95.04 E-value=1.8 Score=41.52 Aligned_cols=117 Identities=7% Similarity=0.029 Sum_probs=61.9
Q ss_pred HhhcCCCC-CchhHHHHHHHHHHHHHHHHHHhHhhhcCC-----CCCCccccc-cCCccchhHhhHHHHHHHHHHHhcC-
Q 037598 165 VLSQTPNF-NSLKGVSLLAAVMSICYSMVALITSIKKGI-----HHRPESYGV-RSHTEVGKAFDFLNGLGTVAFAFAG- 236 (360)
Q Consensus 165 pl~~~~~l-~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fsf~~- 236 (360)
-++..|.+ |....++.+...+-+..+++..++.+..+- .+ +.++-+ |+...-.+..-...|.+...|+...
T Consensus 180 ~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~-Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG 258 (519)
T 2a65_A 180 VSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLG 258 (519)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHH-HHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHH
Confidence 46677888 567777777666555545555555544321 11 122111 1111112234578999999999986
Q ss_pred CceehhhhccCCCCCCCCCCCCcchhhhHHHHHHHHHHHH-----HHhhhhhccCCC
Q 037598 237 HSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLS-----VGISGYWAFGQY 288 (360)
Q Consensus 237 ~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~i~~~~Y~~-----~g~~gy~~fG~~ 288 (360)
...+...-+.+ +++.+..+........-+..-++ ++..||.++|.+
T Consensus 259 ~G~~ity~SY~------~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~ 309 (519)
T 2a65_A 259 FGAIITYASYV------RKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVA 309 (519)
T ss_dssp SSHHHHHHTTS------CTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHH
T ss_pred HhHHhhhhccc------CCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 56666666655 33344445554444443333333 333455545543
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=66.26 E-value=8 Score=37.09 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=76.1
Q ss_pred cCCchHHHHHHHHHhhhhhhhhchH----HHHHHhh---C-----hhHHHHHHHHHHHHHHHHHHHHhhc-----ccccC
Q 037598 27 SRKAKWWYSAFHNVTAMVGAGVLGL----PFAFSQL---G-----WGAGFAAIFGSWAITFYSLWQLVEL-----HEVVP 89 (360)
Q Consensus 27 ~~~~s~~~~~~~l~~~~vG~GiL~l----P~~f~~~---G-----~~~g~i~ll~~~~~~~~t~~~l~~~-----~~~~~ 89 (360)
++.-|.++=+.++..+-+|.|++.- |...... | .-.+.....+=+-+.-++.+.+.-. ..++
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk- 171 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRV- 171 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCT-
T ss_pred CCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcC-
Confidence 4456677778899999999999742 3322111 1 1123333344333444444443332 2111
Q ss_pred Cc----ccCChHHHHHH-hcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCC-cccchhHHHHHHHHHH
Q 037598 90 GK----RFDRYPELGEH-CFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNV-ENVRLTYFILIFACLH 163 (360)
Q Consensus 90 ~~----~~~sy~~l~~~-~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~i~ 163 (360)
+. +..=|+-++++ ..|+ +|+ ++|++-++...+....-+-+....+..-++...+-. +.......+++...++
T Consensus 172 ~~pl~iss~l~PllG~r~~~G~-~G~-~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~~~~~qi~ii~vit~i 249 (539)
T 4ain_A 172 GRKQLLSSAFVPLIGEKGAEGW-LGK-LIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLTLA 249 (539)
T ss_dssp CCCSCTTGGGHHHHHHHHTTSH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCSTTTTTHHHHHHHHH
T ss_pred CCCCcHHHHhHhhcCCCccCCc-chh-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Confidence 11 11225666777 6774 787 678777766655555555555555555555544321 1122223333333334
Q ss_pred HHhhcCCCC-CchhHHHHHHHH
Q 037598 164 LVLSQTPNF-NSLKGVSLLAAV 184 (360)
Q Consensus 164 lpl~~~~~l-~~l~~~s~~~~~ 184 (360)
..++....+ |.++++|-+...
T Consensus 250 ~~~Sa~sGl~kGIk~LS~~N~~ 271 (539)
T 4ain_A 250 FIFSAISGVGKGIQYLSNANMV 271 (539)
T ss_dssp HHHHHHC---CCHHHHGGGHCC
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 445555555 445555554443
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=62.97 E-value=41 Score=31.96 Aligned_cols=163 Identities=14% Similarity=0.042 Sum_probs=79.7
Q ss_pred ccCCchHHHHHHHHHhhhhhhhhchH----HHH-HHh------hChh----HHHHHHHHHHHHHHHHHHHHhhc-----c
Q 037598 26 ASRKAKWWYSAFHNVTAMVGAGVLGL----PFA-FSQ------LGWG----AGFAAIFGSWAITFYSLWQLVEL-----H 85 (360)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~vG~GiL~l----P~~-f~~------~G~~----~g~i~ll~~~~~~~~t~~~l~~~-----~ 85 (360)
++++-|.++=+.++..+-+|.|++.- |.. +.. .|-. .+.....+=+-+..++.+.+.-. +
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~fwgvaEP~~h~~~pP~~~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~ 166 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFF 166 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSTTCCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhhhhhhhhHHHccCCCCCCCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 34556777778899999999998764 333 221 1111 11222222122222222222211 1
Q ss_pred c-cc--CC-cccCChHHHH-HHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHH
Q 037598 86 E-VV--PG-KRFDRYPELG-EHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFA 160 (360)
Q Consensus 86 ~-~~--~~-~~~~sy~~l~-~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 160 (360)
. ++ |. -+..=|+-+. ++..|+ .|+ ++|++-++........-+-+....+..-++...+-.+.......+++..
T Consensus 167 y~r~~~pl~iss~l~PllG~~r~~G~-~G~-~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~~~~~qi~ii~vi 244 (509)
T 2wsw_A 167 FVRKMEVIRPSSTLVPLVGEKHVNGL-FGT-VVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHTLQLDAIIISCW 244 (509)
T ss_dssp HTSCCCCCSGGGGCHHHHHHHHHHSH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred HHcCCCCcchHHHhHhhcCCcccCCc-hhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 1 11 11 1223466677 788884 788 6777666655544444444444444444444333111112222223333
Q ss_pred HHHHHhhcCCCC-CchhHHHHHHHHHHHHHH
Q 037598 161 CLHLVLSQTPNF-NSLKGVSLLAAVMSICYS 190 (360)
Q Consensus 161 ~i~lpl~~~~~l-~~l~~~s~~~~~~~~~~~ 190 (360)
.++...+....+ |.++++|.+.....+..+
T Consensus 245 t~~~~~Sa~sGl~kGIk~LS~~N~~la~~Ll 275 (509)
T 2wsw_A 245 ILLNAICVAFGLQKGVKIASDVRTYLSFLML 275 (509)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334456667778 678888887766555433
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=17.29 E-value=2.3e+02 Score=25.66 Aligned_cols=47 Identities=6% Similarity=0.118 Sum_probs=34.1
Q ss_pred ChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHH
Q 037598 95 RYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVEL 142 (360)
Q Consensus 95 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 142 (360)
...+..+..+|+ ++..++.+......++...+.+...+..+..+-.+
T Consensus 259 ~~~~~~~~~~g~-~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 259 ALAVAAKPFLGN-LGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 456777787885 66667777777778888887777777777776654
Done!