Query 037598
Match_columns 360
No_of_seqs 134 out of 1398
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 03:30:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037598.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037598hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 90.7 5.5 0.0004 35.8 19.9 111 30-141 5-117 (509)
2 d1qnta1 a.4.2.1 (A:92-176) O6- 7.2 82 0.006 20.1 1.4 23 88-110 15-37 (85)
3 d1sfea1 a.4.2.1 (A:93-176) Ada 6.8 86 0.0063 20.0 1.3 23 88-110 15-37 (84)
4 d1rh5b_ f.23.28.1 (B:) Preprot 6.2 85 0.0062 18.4 0.9 30 252-285 16-45 (56)
5 d2e74f1 f.23.25.1 (F:1-32) Pet 4.1 2.7E+02 0.02 13.5 1.9 10 58-67 18-27 (32)
6 d1r3jc_ f.14.1.1 (C:) Potassiu 4.0 4.8E+02 0.035 16.3 4.2 14 308-321 68-81 (103)
7 d1q90g_ f.23.26.1 (G:) PetG su 3.6 3E+02 0.022 13.3 2.4 16 58-73 7-22 (30)
8 d2i5nl1 f.26.1.1 (L:1-273) L ( 3.4 8.9E+02 0.065 18.5 6.2 27 254-280 108-134 (273)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.3 7.3E+02 0.053 18.7 5.1 29 46-74 14-42 (248)
10 d2i5nm1 f.26.1.1 (M:1-323) M ( 3.3 9.7E+02 0.071 18.8 6.6 26 255-280 136-161 (323)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=90.73 E-value=5.5 Score=35.75 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=56.5
Q ss_pred chHHHHHHHHHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhccccc-CCcccCChHHHHHHhcCCc
Q 037598 30 AKWWYSAFHNVTAMVGAGVL-GLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVV-PGKRFDRYPELGEHCFGPR 107 (360)
Q Consensus 30 ~s~~~~~~~l~~~~vG~GiL-~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~-~~~~~~sy~~l~~~~~G~~ 107 (360)
.|..+.++..++..+|.|=+ -.||...+-|-..-++..+++.++...-...+=-+.-+. .......+..+.....+.+
T Consensus 5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~~~ 84 (509)
T d2a65a1 5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR 84 (509)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSH
T ss_pred CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhccCc
Confidence 35578888999999999764 589998766632223333332222222222221111001 1112346777777665543
Q ss_pred cceeehhHHHHHHHhhhhheeeeecccchHHHHH
Q 037598 108 FGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVE 141 (360)
Q Consensus 108 ~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 141 (360)
..+.+.. ...+.++..++-|.+..+-.+.....
T Consensus 85 ~~~giG~-~~~~~~~~i~~yy~vi~~w~l~Y~~~ 117 (509)
T d2a65a1 85 FAKILGV-FGLWIPLVVAIYYVYIESWTLGFAIK 117 (509)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333 33444455555566666655544443
No 2
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.23 E-value=82 Score=20.11 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=15.8
Q ss_pred cCCcccCChHHHHHHhcCCccce
Q 037598 88 VPGKRFDRYPELGEHCFGPRFGY 110 (360)
Q Consensus 88 ~~~~~~~sy~~l~~~~~G~~~g~ 110 (360)
.|-.+..||.++|+.+--|+..+
T Consensus 15 IP~G~v~TYg~iA~~~g~p~aaR 37 (85)
T d1qnta1 15 VKFGEVISYQQLAALAGNPKAAR 37 (85)
T ss_dssp CCTTCCEEHHHHHHHTTCTTCHH
T ss_pred CCCCCcccHHHHHHHcCCcchHH
Confidence 45445789999999975444444
No 3
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=6.78 E-value=86 Score=19.96 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=15.5
Q ss_pred cCCcccCChHHHHHHhcCCccce
Q 037598 88 VPGKRFDRYPELGEHCFGPRFGY 110 (360)
Q Consensus 88 ~~~~~~~sy~~l~~~~~G~~~g~ 110 (360)
.|-.+..||.|+|+.+--++..+
T Consensus 15 Ip~G~v~TYg~iA~~~g~~~a~R 37 (84)
T d1sfea1 15 IPCGETVSYQQLANAIGKPKAVR 37 (84)
T ss_dssp SCTTCCEEHHHHHHHTTCTTCHH
T ss_pred CCCCCeeeHHHHHHHhCCcccHH
Confidence 44445789999999875444434
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.17 E-value=85 Score=18.37 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=16.5
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHhhhhhcc
Q 037598 252 EVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAF 285 (360)
Q Consensus 252 ~~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~f 285 (360)
++|+++-+.+.. .++.+=.+++|+.||..+
T Consensus 16 ~KP~~~Ef~~ia----~v~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 16 KKPTKDEYLAVA----KVTALGISLLGIIGYIIH 45 (56)
T ss_dssp ECCCHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 667665544432 233444566777777654
No 5
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.07 E-value=2.7e+02 Score=13.48 Aligned_cols=10 Identities=40% Similarity=1.169 Sum_probs=5.3
Q ss_pred hChhHHHHHH
Q 037598 58 LGWGAGFAAI 67 (360)
Q Consensus 58 ~G~~~g~i~l 67 (360)
.||.+|.+++
T Consensus 18 vgwglgalll 27 (32)
T d2e74f1 18 VGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHHHHh
Confidence 4565555544
No 6
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.99 E-value=4.8e+02 Score=16.31 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhhhc
Q 037598 308 NFMVFFHVVGSYQV 321 (360)
Q Consensus 308 ~~~~~i~~~~s~pl 321 (360)
+++..+..+....+
T Consensus 68 r~~~~~~~~~Gi~~ 81 (103)
T d1r3jc_ 68 RCVAVVVMVAGITS 81 (103)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 7
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.64 E-value=3e+02 Score=13.30 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=8.9
Q ss_pred hChhHHHHHHHHHHHH
Q 037598 58 LGWGAGFAAIFGSWAI 73 (360)
Q Consensus 58 ~G~~~g~i~ll~~~~~ 73 (360)
.|+++|.+-.-+.|++
T Consensus 7 ~GivlGlipiTl~Glf 22 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHH
Confidence 4566666655555543
No 8
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=3.39 E-value=8.9e+02 Score=18.46 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=20.1
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHhh
Q 037598 254 PSKKPMWKGVVVAYVIVAFCYLSVGIS 280 (360)
Q Consensus 254 p~~~~~~~~~~~~~~i~~~~Y~~~g~~ 280 (360)
..+-.|..-+.++......+|+..+++
T Consensus 108 ar~LGmg~hv~~AF~~aI~~~~~l~~i 134 (273)
T d2i5nl1 108 SRKLGIGWHVPLAFCVPIFMFCVLQVF 134 (273)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHHHHTH
T ss_pred HHHhCCcchhhHHHHHHHHHHHHHhee
Confidence 334456677888888888889888875
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.33 E-value=7.3e+02 Score=18.68 Aligned_cols=29 Identities=10% Similarity=-0.137 Sum_probs=20.2
Q ss_pred hhhchHHHHHHhhChhHHHHHHHHHHHHH
Q 037598 46 AGVLGLPFAFSQLGWGAGFAAIFGSWAIT 74 (360)
Q Consensus 46 ~GiL~lP~~f~~~G~~~g~i~ll~~~~~~ 74 (360)
.++.+.|..+++.-|..+.+++++...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 42 (248)
T d2r6gf1 14 LVGYLVVLMYAQGEYLFAITTLILSSAGL 42 (248)
T ss_dssp HHHHTHHHHHGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHheE
Confidence 34667788899998887766666654443
No 10
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=3.31 E-value=9.7e+02 Score=18.76 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=20.2
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHhh
Q 037598 255 SKKPMWKGVVVAYVIVAFCYLSVGIS 280 (360)
Q Consensus 255 ~~~~~~~~~~~~~~i~~~~Y~~~g~~ 280 (360)
.+-.|..-+.++......+|+..+++
T Consensus 136 r~LGmG~Hva~AFsaAI~~y~~L~~i 161 (323)
T d2i5nm1 136 RALGLGTHIAWNFAAAIFFVLCIGCI 161 (323)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHTH
T ss_pred HHhCCchhHHHHHHHHHHHHHHHhhh
Confidence 33456678888999999999988875
Done!