BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037601
         (151 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QU5|A Chain A, Nmr Structure Of A New Phosphotyrosine Binding Domain
           Containing The Fha2 Domain Of Rad 53
          Length = 182

 Score = 28.9 bits (63), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 91  TTVAWLSNPSYIRSWLDLLSQTPRVAPFISKNDPFIMALKKGLDDLISLF 140
           T V++L+N   I+    LL     +     KN+ F++  K  ++D   LF
Sbjct: 106 TNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEINDTTGLF 155


>pdb|1DMZ|A Chain A, A Refined Nmr Structure Of A New Phophopeptide-Binding
           Domain Containing The Fha2 Of Rad53
 pdb|1FHQ|A Chain A, Refined Solution Structure Of The Fha2 Domain Of Rad53
 pdb|1FHR|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
           With A Phosphotyrosyl Peptide
 pdb|1J4K|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
           With A Phosphotyrosyl Peptide Derived From Rad9
 pdb|1J4L|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
           With A Phosphothreonyl Peptide Derived From Rad9
 pdb|1K2M|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
           With A Phosphotyrosyl Peptide Derived From Rad9
 pdb|1K2N|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
           With A Phosphothreonyl Peptide Derived From Rad9
          Length = 158

 Score = 28.9 bits (63), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 91  TTVAWLSNPSYIRSWLDLLSQTPRVAPFISKNDPFIMALKKGLDDLISLFRR 142
           T V++L+N   I+    LL     +     KN+ F++  K  ++D   LF  
Sbjct: 82  TNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEINDTTGLFNE 133


>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
           Complex With Adp
          Length = 359

 Score = 26.9 bits (58), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 72  RSVKDIFMVTKERIFKFLQTTVAWLSNPSYIRSWLDLLSQTPRVAPFIS 120
           R+++ +F + +ER    +   V++L    Y  S  DLLS  P V P ++
Sbjct: 137 RALQQVFRMIEERPTHAITVRVSYL--EIYNESLFDLLSTLPYVGPSVT 183


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,826,062
Number of Sequences: 62578
Number of extensions: 117309
Number of successful extensions: 288
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 3
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)