BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037601
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q969V3|NCLN_HUMAN Nicalin OS=Homo sapiens GN=NCLN PE=1 SV=2
Length = 563
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 36/52 (69%), Gaps = 4/52 (7%)
Query: 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEI 52
++G L GL + LPTI IVA YD FG AP LS+G+DSNGSGV LLE+
Sbjct: 204 VEGRLTGLGGE----DLPTIVIVAHYDAFGVAPWLSLGADSNGSGVSVLLEL 251
>sp|Q8VCM8|NCLN_MOUSE Nicalin OS=Mus musculus GN=Ncln PE=2 SV=2
Length = 563
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 36/52 (69%), Gaps = 4/52 (7%)
Query: 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEI 52
++G L GL + LPTI IVA YD FG AP LS+G+DSNGSG+ LLE+
Sbjct: 204 VEGRLTGLGGE----DLPTIVIVAHYDAFGVAPWLSLGADSNGSGISVLLEL 251
>sp|Q5XIA1|NCLN_RAT Nicalin OS=Rattus norvegicus GN=Ncln PE=2 SV=1
Length = 563
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 36/52 (69%), Gaps = 4/52 (7%)
Query: 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEI 52
++G L GL + LPTI IVA YD FG AP LS+G+DSNGSG+ LLE+
Sbjct: 204 VEGRLTGLGGE----DLPTIVIVAHYDAFGVAPWLSLGADSNGSGISVLLEL 251
>sp|Q6NZ07|NCLN_DANRE Nicalin-1 OS=Danio rerio GN=ncl1 PE=2 SV=1
Length = 572
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%)
Query: 5 LQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEI 52
L+G LPTI +VA YD+FG AP LS G+DSNGSGV LLE+
Sbjct: 197 LEGRLTGSGGEDLPTIVLVAHYDSFGVAPWLSYGADSNGSGVAILLEL 244
>sp|Q5ZJH2|NCLN_CHICK Nicalin OS=Gallus gallus GN=NCLN PE=2 SV=1
Length = 562
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 36/52 (69%), Gaps = 4/52 (7%)
Query: 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEI 52
++G L GL + LPT+ IVA YD+FG AP LS G+DSNGSGV LLE+
Sbjct: 203 VEGRLTGLGGE----DLPTVVIVAHYDSFGVAPWLSHGADSNGSGVSVLLEL 250
>sp|O98635|MATK_NUPVA Maturase K OS=Nuphar variegata GN=matK PE=3 SV=1
Length = 505
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 42/96 (43%)
Query: 22 IVASYDTFGAAPALSVGSDSNGSGVVALLEIVFAELLIPCRHFVDETSIIRSVKDIFMVT 81
I++ D+ P S S + G ++EI F+ L+P + + +RS+ IF
Sbjct: 80 IISVNDSRFVGPNRSFYSQTISEGFAGIMEIPFSMRLVPSLERIAKYQNLRSIHSIFPFL 139
Query: 82 KERIFKFLQTTVAWLSNPSYIRSWLDLLSQTPRVAP 117
++++ + + +P ++ L L R AP
Sbjct: 140 EDKLSHLYYVSDILIPHPIHLEILLQTLRTRIRDAP 175
>sp|A1XFT6|MATK_NUPAD Maturase K OS=Nuphar advena GN=matK PE=3 SV=1
Length = 505
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 42/96 (43%)
Query: 22 IVASYDTFGAAPALSVGSDSNGSGVVALLEIVFAELLIPCRHFVDETSIIRSVKDIFMVT 81
I++ D+ P S S + G ++EI F+ L+P + + +RS+ IF
Sbjct: 80 IISVNDSRFVGPNRSFYSQTISEGFAGIMEIPFSMRLVPSLERIAKYQNLRSIHSIFPFL 139
Query: 82 KERIFKFLQTTVAWLSNPSYIRSWLDLLSQTPRVAP 117
++++ + + +P ++ L L R AP
Sbjct: 140 EDKLSHLYYVSDILIPHPIHLEILLQTLRTRIRDAP 175
>sp|P51266|ODPB_PORPU Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra
purpurea GN=pdhB PE=3 SV=1
Length = 331
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 51 EIVFAELLIPCRHFVDETSIIRSVKDIFMVTKERIFKFLQTTVAWLSNPSYIRSWLDLLS 110
EI E LIP +D+ ++R KDI ++T R+ + + L N Y LDL+S
Sbjct: 182 EIPEDEYLIP----LDKAEVVRKGKDITILTYSRMRHHVTEALPLLLNDGYDPEVLDLIS 237
Query: 111 QTP 113
P
Sbjct: 238 LKP 240
>sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus
GN=Prkag2 PE=1 SV=2
Length = 566
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 77 IFMVTKERIFKFLQTTVAWLSNPSYIRSWLDLLS-QTPRVAPFISKNDPFIMALKKGLDD 135
++++T +RI KFLQ ++ + P++++ LD L T FI + P I AL ++
Sbjct: 393 LYILTHKRILKFLQLFMSDMPKPAFMKQNLDELGIGTYHNIAFIHPDTPIIKALNIFVER 452
Query: 136 LIS 138
IS
Sbjct: 453 RIS 455
>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens
GN=PRKAG2 PE=1 SV=1
Length = 569
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 77 IFMVTKERIFKFLQTTVAWLSNPSYIRSWLDLLS-QTPRVAPFISKNDPFIMALKKGLDD 135
++++T +RI KFLQ ++ + P++++ LD L T FI + P I AL ++
Sbjct: 396 LYILTHKRILKFLQLFMSDMPKPAFMKQNLDELGIGTYHNIAFIHPDTPIIKALNIFVER 455
Query: 136 LIS 138
IS
Sbjct: 456 RIS 458
>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii
GN=PRKAG2 PE=2 SV=1
Length = 524
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 77 IFMVTKERIFKFLQTTVAWLSNPSYIRSWLDLLS-QTPRVAPFISKNDPFIMALKKGLDD 135
++++T +RI KFLQ ++ + P++++ LD L T FI + P I AL ++
Sbjct: 351 LYILTHKRILKFLQLFMSDMPKPAFMKQNLDELGIGTYHNIAFIHPDTPIIKALNIFVER 410
Query: 136 LIS 138
IS
Sbjct: 411 RIS 413
>sp|A3DH20|ADDB_CLOTH ATP-dependent helicase/deoxyribonuclease subunit B OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=addB PE=3
SV=1
Length = 1146
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 42 NGSGVVALLEIVFAELLIPCRHFVDE---------TSIIRSVKDIFMV--TKERIFKFLQ 90
N G L+E VF+E IPC F+D +I S+ DIF+ + E +F++L+
Sbjct: 346 NLDGYEKLIEAVFSEYGIPC--FIDRKVDIVNHPLVRLIMSMLDIFIENWSYEAVFRYLK 403
Query: 91 TTVAWLSNPSYIR 103
T + + S R
Sbjct: 404 TGLTGIDRESIDR 416
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,201,866
Number of Sequences: 539616
Number of extensions: 1959849
Number of successful extensions: 4352
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4344
Number of HSP's gapped (non-prelim): 14
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)