Query 037601
Match_columns 151
No_of_seqs 173 out of 403
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 02:36:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2526 Predicted aminopeptida 100.0 1.6E-37 3.5E-42 274.5 11.1 145 1-145 196-489 (555)
2 PF04389 Peptidase_M28: Peptid 99.3 3.2E-12 6.9E-17 98.1 3.1 39 18-56 1-43 (179)
3 PRK10199 alkaline phosphatase 98.8 6.3E-09 1.4E-13 90.8 5.9 49 1-56 100-160 (346)
4 COG2234 Iap Predicted aminopep 98.3 3.6E-07 7.8E-12 79.3 3.4 40 17-56 198-245 (435)
5 KOG2194 Aminopeptidases of the 97.7 3.5E-05 7.6E-10 73.8 5.0 49 1-57 131-181 (834)
6 KOG2195 Transferrin receptor a 97.7 4.6E-05 9.9E-10 72.1 4.5 47 1-58 341-389 (702)
7 PF05450 Nicastrin: Nicastrin; 97.6 7.7E-05 1.7E-09 61.9 4.8 40 18-57 1-42 (234)
8 TIGR03176 AllC allantoate amid 97.1 0.0004 8.6E-09 60.8 3.6 63 1-82 58-122 (406)
9 PRK12890 allantoate amidohydro 96.9 0.0018 3.8E-08 56.1 5.5 46 1-56 63-110 (414)
10 TIGR01879 hydantase amidase, h 96.8 0.0025 5.4E-08 55.2 5.4 46 1-56 56-103 (401)
11 PRK13590 putative bifunctional 96.4 0.0055 1.2E-07 56.5 5.5 43 1-53 240-282 (591)
12 PRK12891 allantoate amidohydro 96.1 0.012 2.5E-07 51.3 5.4 46 1-56 65-112 (414)
13 PRK06133 glutamate carboxypept 95.8 0.018 3.9E-07 50.1 5.6 46 1-53 90-148 (410)
14 PRK13381 peptidase T; Provisio 95.8 0.022 4.9E-07 49.2 6.0 48 1-53 57-150 (404)
15 PRK13799 unknown domain/N-carb 95.8 0.015 3.3E-07 53.7 5.2 46 1-56 240-287 (591)
16 PRK07906 hypothetical protein; 95.6 0.022 4.8E-07 49.4 5.4 51 1-56 54-122 (426)
17 PRK09290 allantoate amidohydro 95.6 0.025 5.4E-07 49.1 5.6 46 1-56 62-109 (413)
18 PRK12893 allantoate amidohydro 95.5 0.028 6E-07 48.5 5.5 46 1-56 65-112 (412)
19 PRK06915 acetylornithine deace 95.5 0.027 5.9E-07 48.7 5.3 49 2-56 84-151 (422)
20 TIGR01883 PepT-like peptidase 95.5 0.031 6.7E-07 47.1 5.5 47 1-53 52-112 (361)
21 TIGR01882 peptidase-T peptidas 95.5 0.03 6.6E-07 48.8 5.6 26 1-30 60-85 (410)
22 PRK05469 peptidase T; Provisio 95.5 0.032 7E-07 48.2 5.7 27 1-31 58-84 (408)
23 PRK09133 hypothetical protein; 95.4 0.031 6.6E-07 49.5 5.6 46 2-53 92-153 (472)
24 TIGR01910 DapE-ArgE acetylorni 95.2 0.039 8.4E-07 47.0 5.2 37 17-53 64-117 (375)
25 PRK06837 acetylornithine deace 94.9 0.069 1.5E-06 46.7 6.1 50 2-56 87-155 (427)
26 PRK13983 diaminopimelate amino 94.9 0.055 1.2E-06 46.0 5.3 46 2-53 67-129 (400)
27 PRK08596 acetylornithine deace 94.7 0.073 1.6E-06 46.4 5.8 52 1-56 65-135 (421)
28 PRK13007 succinyl-diaminopimel 94.6 0.07 1.5E-06 44.7 5.2 36 18-53 62-107 (352)
29 PRK09104 hypothetical protein; 94.6 0.058 1.3E-06 47.6 4.8 51 1-56 71-145 (464)
30 PRK12892 allantoate amidohydro 94.3 0.089 1.9E-06 45.3 5.3 45 1-56 64-110 (412)
31 TIGR01893 aa-his-dipept aminoa 94.2 0.086 1.9E-06 46.9 5.1 50 1-53 49-121 (477)
32 PRK13013 succinyl-diaminopimel 94.1 0.13 2.8E-06 44.4 5.9 50 1-56 74-140 (427)
33 PRK08262 hypothetical protein; 94.0 0.061 1.3E-06 47.8 3.9 37 17-53 111-166 (486)
34 TIGR01892 AcOrn-deacetyl acety 93.9 0.13 2.9E-06 43.0 5.5 40 17-56 58-115 (364)
35 PRK07907 hypothetical protein; 93.8 0.085 1.8E-06 46.4 4.4 47 1-53 73-136 (449)
36 TIGR01880 Ac-peptdase-euk N-ac 93.7 0.15 3.2E-06 43.8 5.7 50 2-56 61-129 (400)
37 PF01546 Peptidase_M20: Peptid 92.7 0.13 2.8E-06 38.8 3.2 35 21-55 1-52 (189)
38 PRK04443 acetyl-lysine deacety 92.3 0.24 5.1E-06 42.0 4.7 36 18-53 60-103 (348)
39 PRK08652 acetylornithine deace 92.2 0.17 3.8E-06 42.1 3.7 37 17-53 55-99 (347)
40 PF09940 DUF2172: Domain of un 92.2 0.22 4.7E-06 44.7 4.5 39 5-57 124-164 (386)
41 PRK13009 succinyl-diaminopimel 92.0 0.34 7.5E-06 40.9 5.3 37 17-53 58-111 (375)
42 PRK13004 peptidase; Reviewed 91.8 0.33 7.2E-06 41.9 5.1 39 18-56 70-127 (399)
43 PRK07473 carboxypeptidase; Pro 91.7 0.42 9E-06 41.3 5.7 37 17-53 75-124 (376)
44 PRK08201 hypothetical protein; 91.6 0.37 7.9E-06 42.4 5.3 37 17-53 79-132 (456)
45 PRK07338 hypothetical protein; 91.5 0.28 6.2E-06 42.1 4.4 36 18-53 93-141 (402)
46 PRK07522 acetylornithine deace 91.4 0.48 1E-05 40.2 5.6 37 17-53 64-116 (385)
47 PRK00466 acetyl-lysine deacety 91.2 0.24 5.2E-06 41.8 3.6 36 18-53 61-104 (346)
48 PRK08588 succinyl-diaminopimel 90.9 0.54 1.2E-05 39.9 5.5 39 18-56 60-117 (377)
49 PRK06446 hypothetical protein; 90.1 0.54 1.2E-05 41.3 4.9 37 17-53 62-115 (436)
50 TIGR01900 dapE-gram_pos succin 90.1 0.41 8.9E-06 41.2 4.1 37 17-53 52-115 (373)
51 TIGR01902 dapE-lys-deAc N-acet 89.6 0.46 9.9E-06 39.9 3.9 40 17-56 50-99 (336)
52 PRK05111 acetylornithine deace 89.2 0.86 1.9E-05 38.7 5.3 36 18-53 72-123 (383)
53 COG4882 Predicted aminopeptida 88.8 0.44 9.6E-06 43.1 3.4 30 18-53 190-219 (486)
54 PRK15026 aminoacyl-histidine d 88.1 1.3 2.8E-05 40.2 6.0 37 17-53 68-127 (485)
55 PRK08651 succinyl-diaminopimel 87.9 0.81 1.8E-05 39.0 4.3 36 18-53 75-126 (394)
56 PRK07079 hypothetical protein; 87.5 1.1 2.3E-05 39.7 5.1 37 17-53 85-139 (469)
57 TIGR01891 amidohydrolases amid 87.2 1.4 3.1E-05 37.4 5.4 14 18-31 57-70 (363)
58 TIGR03320 ygeY M20/DapE family 86.8 1.2 2.6E-05 38.3 4.8 36 18-53 68-120 (395)
59 TIGR03526 selenium_YgeY putati 86.4 1.8 3.8E-05 37.3 5.7 39 18-56 68-125 (395)
60 PRK08554 peptidase; Reviewed 86.2 1.5 3.2E-05 38.9 5.2 36 18-53 64-115 (438)
61 COG0624 ArgE Acetylornithine d 85.7 1.6 3.4E-05 37.7 5.0 36 18-53 76-128 (409)
62 PLN02280 IAA-amino acid hydrol 84.3 2 4.3E-05 39.0 5.1 35 18-53 153-198 (478)
63 TIGR01886 dipeptidase dipeptid 84.1 1.4 3.1E-05 39.2 4.2 37 17-53 78-129 (466)
64 PLN02693 IAA-amino acid hydrol 82.3 3 6.4E-05 37.2 5.4 39 17-56 102-153 (437)
65 PRK07205 hypothetical protein; 81.3 3.5 7.7E-05 36.2 5.5 37 17-53 75-128 (444)
66 TIGR01246 dapE_proteo succinyl 80.9 2.3 4.9E-05 36.0 4.0 37 17-53 55-108 (370)
67 PRK06156 hypothetical protein; 78.4 4.9 0.00011 36.4 5.6 37 17-53 109-166 (520)
68 PRK08737 acetylornithine deace 76.3 4.2 9.2E-05 35.0 4.4 36 18-53 64-114 (364)
69 PRK07318 dipeptidase PepV; Rev 72.4 8.8 0.00019 34.0 5.5 40 17-56 79-135 (466)
70 TIGR01887 dipeptidaselike dipe 67.8 8.7 0.00019 34.3 4.5 37 17-53 67-118 (447)
71 KOG3946 Glutaminyl cyclase [Po 63.1 6.5 0.00014 34.6 2.6 37 17-53 117-153 (338)
72 TIGR03106 trio_M42_hydro hydro 58.8 9.1 0.0002 33.4 2.8 25 1-31 48-72 (343)
73 COG1237 Metal-dependent hydrol 53.6 9.4 0.0002 32.7 2.0 17 17-33 59-76 (259)
74 KOG2275 Aminoacylase ACY1 and 53.3 29 0.00063 31.7 5.1 46 3-53 79-141 (420)
75 PF05343 Peptidase_M42: M42 gl 51.5 14 0.0003 31.5 2.7 25 1-31 3-27 (292)
76 PRK09961 exoaminopeptidase; Pr 49.9 14 0.00031 32.0 2.6 14 18-31 55-68 (344)
77 COG1363 FrvX Cellulase M and r 48.6 14 0.00031 32.7 2.4 25 1-31 47-71 (355)
78 TIGR03107 glu_aminopep glutamy 41.5 24 0.00053 30.9 2.8 14 18-31 55-68 (350)
79 KOG2526 Predicted aminopeptida 39.8 23 0.0005 33.0 2.4 20 132-151 536-555 (555)
80 PF00753 Lactamase_B: Metallo- 35.4 10 0.00022 27.3 -0.5 16 17-32 44-60 (194)
81 KOG2657 Transmembrane glycopro 34.6 19 0.0004 34.1 1.0 57 17-78 177-233 (596)
82 PRK00685 metal-dependent hydro 30.5 26 0.00055 27.4 1.0 16 16-31 40-56 (228)
83 COG1782 Predicted metal-depend 27.5 35 0.00076 32.4 1.5 18 17-34 235-253 (637)
84 smart00849 Lactamase_B Metallo 26.3 32 0.0007 25.0 0.9 17 17-33 42-59 (183)
85 PF14114 DUF4286: Domain of un 25.2 60 0.0013 23.2 2.1 21 85-110 1-21 (98)
86 COG4310 Uncharacterized protei 24.6 86 0.0019 28.3 3.3 29 18-53 179-207 (435)
87 COG0491 GloB Zn-dependent hydr 24.2 30 0.00066 26.3 0.4 17 17-33 63-80 (252)
88 PRK04286 hypothetical protein; 23.2 52 0.0011 27.8 1.7 15 17-31 66-81 (298)
89 COG4227 Antirestriction protei 23.0 56 0.0012 28.6 1.9 47 69-115 232-278 (316)
90 PRK02113 putative hydrolase; P 21.6 44 0.00096 26.7 0.9 17 17-33 67-84 (252)
91 PF04114 Gaa1: Gaa1-like, GPI 21.4 1.8E+02 0.004 26.8 4.9 45 1-57 6-52 (504)
92 PF13434 K_oxygenase: L-lysine 21.2 39 0.00084 29.2 0.5 38 104-141 70-109 (341)
93 TIGR03307 PhnP phosphonate met 21.0 60 0.0013 25.8 1.6 16 17-32 57-73 (238)
No 1
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-37 Score=274.47 Aligned_cols=145 Identities=40% Similarity=0.591 Sum_probs=134.5
Q ss_pred CeEEec-CCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHhh--------------------
Q 037601 1 MQGGLQ-GLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAEL-------------------- 57 (151)
Q Consensus 1 i~g~l~-G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~~-------------------- 57 (151)
|+|||+ |.+.++|++++|+|+|+||||+||+.|+++.|||.|||||++|||+| ||++
T Consensus 196 I~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG 275 (555)
T KOG2526|consen 196 IVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAG 275 (555)
T ss_pred EEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCc
Confidence 789999 98877789999999999999999999999999999999999999999 9988
Q ss_pred --------------------------------------------------------------------------------
Q 037601 58 -------------------------------------------------------------------------------- 57 (151)
Q Consensus 58 -------------------------------------------------------------------------------- 57 (151)
T Consensus 276 ~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek~~~~v~~khkkInla 355 (555)
T KOG2526|consen 276 KLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEKKNIEVVTKHKKINLA 355 (555)
T ss_pred cccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchhcceEEEEEeeeEeec
Confidence
Q ss_pred ----------------------------------hc-CCCcccchhhhccchhhHHhhhhhhcee--eccc-----cccc
Q 037601 58 ----------------------------------LI-PCRHFVDETSIIRSVKDIFMVTKERIFK--FLQT-----TVAW 95 (151)
Q Consensus 58 ----------------------------------I~-d~r~~v~~~~L~rNvkIIAESLa~~iY~--it~~-----~gsl 95 (151)
|| |+|+.+++.+|++|+|||||+|+++||. ..+. .+++
T Consensus 356 ~s~lAWEHErFsikR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRlIaEAla~~iy~ekG~dp~s~vf~eql 435 (555)
T KOG2526|consen 356 SSRLAWEHERFSIKRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRLIAEALAGYIYDEKGPDPDSRVFSEQL 435 (555)
T ss_pred cchhhhhhhhhhhhcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhHHHHHHHHHHhccCCCCCCcccchhhh
Confidence 66 9999999999999999999999999994 2111 2999
Q ss_pred ccChhHHHHHHHhhhcCCCCccccCCCchHHHHHHHhh----hhhhhhhcCCCC
Q 037601 96 LSNPSYIRSWLDLLSQTPRVAPFISKNDPFIMALKKGL----DDLISLFRRPPS 145 (151)
Q Consensus 96 ~I~~~~L~s~l~~LS~~PRaaqll~kd~~~~~~L~~~l----~~v~~~~~k~d~ 145 (151)
+|+++++++||+||+++||.+|+++||++|+++||+.| ++||++|.|+|+
T Consensus 436 ai~~e~vds~ld~f~~~Pr~a~l~~kde~~~s~lk~~le~Yln~vk~~h~k~Da 489 (555)
T KOG2526|consen 436 AISKEAVDSFLDQFASRPRPAGLQRKDESITSNLKSVLEGYLNVVKSAHTKTDA 489 (555)
T ss_pred hcCHHHHHHHHHHhccCCcccccccCcchHHHHHHHHHHHHHhhhhheeeccCc
Confidence 99999999999999999999999999999999988855 999999999997
No 2
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.25 E-value=3.2e-12 Score=98.10 Aligned_cols=39 Identities=44% Similarity=0.647 Sum_probs=30.2
Q ss_pred CeEEEEeecccccCCC--CCCCCCCCchhHHHHHHHHH--HHh
Q 037601 18 PTIAIVASYDTFGAAP--ALSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~--~~~~gaddn~sg~~~lle~a--f~~ 56 (151)
++|||+|||||.+... ...+||+||||||++|||+| |++
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~ 43 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKE 43 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHH
Confidence 4799999999998221 36799999999999999999 665
No 3
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=98.81 E-value=6.3e-09 Score=90.81 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=37.6
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCC----------CCCCCCCCchhHHHHHHHHH--HHh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAP----------ALSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~----------~~~~gaddn~sg~~~lle~a--f~~ 56 (151)
|+|+++|.. .+.|+|+|||||++-.. .+.+||+||+|||+++||+| |++
T Consensus 100 VIa~~~G~~-------~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~ 160 (346)
T PRK10199 100 VIAAHEGKA-------PQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKN 160 (346)
T ss_pred EEEEECCCC-------CCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhh
Confidence 467777732 37799999999986211 13479999999999999999 664
No 4
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=98.33 E-value=3.6e-07 Score=79.27 Aligned_cols=40 Identities=35% Similarity=0.480 Sum_probs=28.7
Q ss_pred CCeEEEEeecccccCCC------CCCCCCCCchhHHHHHHHHH--HHh
Q 037601 17 LPTIAIVASYDTFGAAP------ALSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~------~~~~gaddn~sg~~~lle~a--f~~ 56 (151)
.+.++.++|+|+++... ...+||+|||||+++|||+| |++
T Consensus 198 ~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~ 245 (435)
T COG2234 198 IEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKG 245 (435)
T ss_pred ceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhc
Confidence 35566666666665432 13489999999999999999 554
No 5
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.75 E-value=3.5e-05 Score=73.85 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=38.0
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHhh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAEL 57 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~~ 57 (151)
|+.+|++....+ ...|++.||||+.+.. +||.|+|+|||.|||++ +++.
T Consensus 131 IvVki~~k~~~~----~~~lLlnaHfDSvpt~----~gAtDDg~~va~mLe~lRv~s~~ 181 (834)
T KOG2194|consen 131 IVVKISPKNGND----KNALLLNAHFDSVPTG----PGATDDGSGVASMLEALRVLSKS 181 (834)
T ss_pred EEEecCCCCCCc----cceeeeeccccccCCC----CCCCcchhHHHHHHHHHHHhhcC
Confidence 345665543322 3579999999999884 89999999999999999 6643
No 6
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=97.67 E-value=4.6e-05 Score=72.10 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=40.8
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHhhh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAELL 58 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~~I 58 (151)
|+|.++|..-+| .+|||+||.|+.. .||-|-+||++.|+|++ |+.++
T Consensus 341 Iig~I~Gs~epD-----~~ViigahrDSw~------~Ga~dp~sGta~Ll~i~~~~~~~~ 389 (702)
T KOG2195|consen 341 IIGKIEGSEEPD-----RYVIIGAHRDSWT------FGAIDPNSGTALLLEIARALSKLK 389 (702)
T ss_pred EEEEEecCcCCC-----eEEEEeccccccc------cCCcCCCccHHHHHHHHHHHHHHH
Confidence 789999976554 7899999999997 58999999999999999 77663
No 7
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=97.63 E-value=7.7e-05 Score=61.92 Aligned_cols=40 Identities=45% Similarity=0.621 Sum_probs=37.5
Q ss_pred CeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHhh
Q 037601 18 PTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAEL 57 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~~ 57 (151)
|+|+++|.+|+++.-+++++|||+++||+++||++| ++++
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~ 42 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKL 42 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999 7665
No 8
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=97.14 E-value=0.0004 Score=60.79 Aligned_cols=63 Identities=24% Similarity=0.189 Sum_probs=47.1
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHhhhcCCCcccchhhhccchhhHH
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAELLIPCRHFVDETSIIRSVKDIF 78 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~~I~d~r~~v~~~~L~rNvkIIA 78 (151)
|+|++||..+ ..|.|+++.|+|+.+. -|.=|+..||++-||.+ +.+. -..+.+++++|+
T Consensus 58 ~~~~~~g~~~-----~~~~i~~gsHlDtv~~-----gG~~dg~~Gv~~~le~~~~l~~~---------~~~~~~~i~vi~ 118 (406)
T TIGR03176 58 LYGRLVGTEF-----PEETILTGSHIDTVVN-----GGNLDGQFGALAAWLAVDYLKEK---------YGAPLRTVEVLS 118 (406)
T ss_pred EEEEecCCCC-----CCCeEEEeccccCCCC-----CCccCchhhHHHHHHHHHHHHHc---------CCCCCCCeEEEE
Confidence 5799999753 2689999999999986 38889999999999999 4431 125556666666
Q ss_pred hhhh
Q 037601 79 MVTK 82 (151)
Q Consensus 79 ESLa 82 (151)
.+=+
T Consensus 119 ~~~E 122 (406)
T TIGR03176 119 MAEE 122 (406)
T ss_pred eccc
Confidence 4433
No 9
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=96.90 E-value=0.0018 Score=56.15 Aligned_cols=46 Identities=35% Similarity=0.430 Sum_probs=36.6
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~ 56 (151)
++++++|.... .|.|++.+|||+++. .|+.|+.+|++++|+++ +.+
T Consensus 63 lia~~~g~~~~-----~~~l~~~~H~DtVp~-----~g~~D~~~g~aa~l~a~~~l~~ 110 (414)
T PRK12890 63 LFGRLPGRDPD-----LPPLMTGSHLDTVPN-----GGRYDGILGVLAGLEVVAALRE 110 (414)
T ss_pred EEEEeCCCCCC-----CCEEEEeCcccCCCC-----CCCcCCHHHHHHHHHHHHHHHH
Confidence 46788875321 478999999999986 37789999999999998 553
No 10
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=96.77 E-value=0.0025 Score=55.18 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=36.7
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~ 56 (151)
|+|+++|..++ .|.|++++|+|+++. .|.-|+..|++++|+.+ +.+
T Consensus 56 l~a~~~g~~~~-----~~~l~~~~H~DtV~~-----gg~~dg~~gvaa~l~a~~~l~~ 103 (401)
T TIGR01879 56 LIGRKEGTEPP-----LEVVLSGSHIDTVVN-----GGNFDGQLGVLAGIEVVDALKE 103 (401)
T ss_pred EEEEecCCCCC-----CCEEEEecccccCCC-----CCccCCHHHHHHHHHHHHHHHH
Confidence 57889885432 488999999999986 36778899999999999 544
No 11
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=96.42 E-value=0.0055 Score=56.54 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=35.6
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a 53 (151)
++|++||.++ ..|.|++++|+|++.. -|.-|+..||++.||.+
T Consensus 240 l~~~~~g~~~-----~~~~v~~gsHlDTV~~-----gG~~DG~~Gv~a~lea~ 282 (591)
T PRK13590 240 VVGRYKGSTP-----QAKRLLTGSHYDTVRN-----GGKYDGRLGIFVPMACV 282 (591)
T ss_pred EEEEecCCCC-----CCCeEEEecccccCCC-----CCCcccHHHHHHHHHHH
Confidence 5788898643 2588999999999964 36679999999999999
No 12
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=96.07 E-value=0.012 Score=51.34 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=36.1
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~ 56 (151)
++|+++|.+.. .|.|++++|+|+++.. |.-|+-+||++.|+.+ +.+
T Consensus 65 l~a~~~g~~~~-----~~~l~~~~H~DtVp~g-----g~~D~k~Gv~a~l~a~~~l~~ 112 (414)
T PRK12891 65 LFARRAGRDPD-----AAPVMTGSHADSQPTG-----GRYDGIYGVLGGLEVVRALND 112 (414)
T ss_pred EEEEecCCCCC-----CCeEEEEecccCCCCC-----ccccchhhHHHHHHHHHHHHH
Confidence 46888885421 4789999999999763 5568899999999999 554
No 13
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=95.85 E-value=0.018 Score=50.07 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=34.9
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCC-C------------CCCCCCCchhHHHHHHHHH
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAP-A------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~-~------------~~~gaddn~sg~~~lle~a 53 (151)
|+|.++|.+ .|+|++.+|+|+++... + +..|+-|+-+|++++|+.+
T Consensus 90 lia~~~g~~-------~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~ 148 (410)
T PRK06133 90 VVATFKGTG-------KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHAL 148 (410)
T ss_pred EEEEECCCC-------CceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHH
Confidence 356666631 37899999999997532 1 2378999999999999988
No 14
>PRK13381 peptidase T; Provisional
Probab=95.82 E-value=0.022 Score=49.16 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=36.2
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCC-----------------------------------------CC-CC
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPA-----------------------------------------LS-VG 38 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~-----------------------------------------~~-~g 38 (151)
|+|+++|.+. ..|+|++.+|+|+++..+. ++ -|
T Consensus 57 vi~~~~g~~~-----~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG 131 (404)
T PRK13381 57 VTAKLPGNTP-----GAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDG 131 (404)
T ss_pred EEEEEecCCC-----CCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCC
Confidence 5788888542 1488999999999975431 11 36
Q ss_pred C----CCchhHHHHHHHHH
Q 037601 39 S----DSNGSGVVALLEIV 53 (151)
Q Consensus 39 a----ddn~sg~~~lle~a 53 (151)
+ .|+-+|++++|..+
T Consensus 132 ~~~~g~DmKgg~aa~l~a~ 150 (404)
T PRK13381 132 TSVLGADNKAAIAVVMTLL 150 (404)
T ss_pred ccccccccHHHHHHHHHHH
Confidence 7 89999999999988
No 15
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=95.79 E-value=0.015 Score=53.66 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=36.8
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~ 56 (151)
|+|+++|.++. .|.|++++|+|++.. -|.=|+..||++.||.+ |..
T Consensus 240 v~~~~~g~~~~-----~p~v~~gSHlDTV~~-----gG~~DG~~Gv~a~l~~~~~l~~ 287 (591)
T PRK13799 240 VVGRYKAADDD-----AKTLITGSHYDTVRN-----GGKYDGREGIFLAIACVKELHE 287 (591)
T ss_pred EEEEcCCCCCC-----CCeEEEeccccccCC-----CCccccHHHHHHHHHHHHHHHH
Confidence 57888886532 588999999999965 35568889999999999 553
No 16
>PRK07906 hypothetical protein; Provisional
Probab=95.64 E-value=0.022 Score=49.43 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=37.7
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCC--------------C--CCCCCCCchhHHHHHHHHH--HHh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAP--------------A--LSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~--------------~--~~~gaddn~sg~~~lle~a--f~~ 56 (151)
++++++|.+. ..+.|++.+|+|+++..+ + +-.|+.|+-+|++++|+++ +.+
T Consensus 54 v~~~~~g~~~-----~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~ 122 (426)
T PRK07906 54 VVARLPGADP-----SRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLAR 122 (426)
T ss_pred EEEEEeCCCC-----CCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHH
Confidence 3667777432 246799999999997631 1 2279999999999999998 543
No 17
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=95.61 E-value=0.025 Score=49.11 Aligned_cols=46 Identities=33% Similarity=0.419 Sum_probs=34.4
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~ 56 (151)
++++++|.+.. .|.|++.+|+|+++.. |.-|+-+|++++|+.+ +.+
T Consensus 62 l~a~~~g~~~~-----~~~l~l~gH~DtVp~~-----g~~d~k~g~aa~l~a~~~l~~ 109 (413)
T PRK09290 62 LFGRLEGRDPD-----APAVLTGSHLDTVPNG-----GRFDGPLGVLAGLEAVRTLNE 109 (413)
T ss_pred EEEEecCCCCC-----CCEEEEecCccCCCCC-----CCcCCHHHHHHHHHHHHHHHH
Confidence 46778764311 3789999999999763 5557788999999988 554
No 18
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=95.53 E-value=0.028 Score=48.53 Aligned_cols=46 Identities=30% Similarity=0.443 Sum_probs=34.0
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~ 56 (151)
++++++|.+.. .|.|++.+|+|+++.. |.-|+-+|++++|+.+ +.+
T Consensus 65 ~~a~~~g~~~~-----~~~l~l~~H~DtVp~~-----g~~dgk~gvaa~l~a~~~l~~ 112 (412)
T PRK12893 65 LFGRRAGTDPD-----APPVLIGSHLDTQPTG-----GRFDGALGVLAALEVVRTLND 112 (412)
T ss_pred EEEEeCCCCCC-----CCEEEEEecccCCCCC-----CcccchhhHHHHHHHHHHHHH
Confidence 46778774321 3789999999999752 4456678999999988 554
No 19
>PRK06915 acetylornithine deacetylase; Validated
Probab=95.48 E-value=0.027 Score=48.73 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=35.4
Q ss_pred eEEecCCCCCCCCCCCCeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH--HHh
Q 037601 2 QGGLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 2 ~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a--f~~ 56 (151)
+|+++|.+. .|+|++.+|+|+++..+ | +..|+.|+-+|++++|..+ +.+
T Consensus 84 ia~~~g~~~------~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~ 151 (422)
T PRK06915 84 VATLKGSGG------GKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIE 151 (422)
T ss_pred EEEEcCCCC------CCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHH
Confidence 556666421 37899999999998631 1 2279999999999988776 544
No 20
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=95.47 E-value=0.031 Score=47.11 Aligned_cols=47 Identities=28% Similarity=0.406 Sum_probs=33.8
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCC----------CCCCC----CCchhHHHHHHHHH
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPA----------LSVGS----DSNGSGVVALLEIV 53 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~----------~~~ga----ddn~sg~~~lle~a 53 (151)
++|.++|... .|+|++.+|.|+++..+. +..|+ -|+-+|++++|+++
T Consensus 52 ~~~~~~g~~~------~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~ 112 (361)
T TIGR01883 52 LIARLPGTVK------FDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAM 112 (361)
T ss_pred EEEEEeCCCC------CCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHH
Confidence 3566766421 378999999999985421 22566 57789999999998
No 21
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=95.47 E-value=0.03 Score=48.76 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=20.2
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeeccccc
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFG 30 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g 30 (151)
|+|++||.... +.|.|+++||.|+..
T Consensus 60 v~~~~~~~~~~----~~~~i~~~aHmDTv~ 85 (410)
T TIGR01882 60 VIATIPSNTDK----DVPTIGFLAHVDTAD 85 (410)
T ss_pred EEEEecCCCCC----CCCEEEEEEecccCc
Confidence 57889996431 248899999999985
No 22
>PRK05469 peptidase T; Provisional
Probab=95.46 E-value=0.032 Score=48.24 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=19.9
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccC
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGA 31 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~ 31 (151)
++|.++|...+ ..|+|++.+|||+++.
T Consensus 58 v~~~~~g~~~~----~~~~i~l~~H~D~vp~ 84 (408)
T PRK05469 58 VMATLPANVDK----DVPTIGFIAHMDTAPD 84 (408)
T ss_pred EEEEecCCCCC----CCCeEEEEEeccCCCC
Confidence 46788885311 2488999999999965
No 23
>PRK09133 hypothetical protein; Provisional
Probab=95.43 E-value=0.031 Score=49.48 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=34.6
Q ss_pred eEEecCCCCCCCCCCCCeEEEEeecccccCCC--------------C--CCCCCCCchhHHHHHHHHH
Q 037601 2 QGGLQGLKADGDANQLPTIAIVASYDTFGAAP--------------A--LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 2 ~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~--------------~--~~~gaddn~sg~~~lle~a 53 (151)
+++++|.+. .+.|++.+|+|+++..+ + +-.|+.|+-+|++++|+.+
T Consensus 92 i~~~~g~~~------~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~ 153 (472)
T PRK09133 92 VARLRGTDP------KKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATL 153 (472)
T ss_pred EEEecCCCC------CCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHH
Confidence 566666432 26799999999997531 1 2379999999999999887
No 24
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=95.18 E-value=0.039 Score=46.96 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=30.3
Q ss_pred CCeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a 53 (151)
.|+|++.+|+|+++... | +..|+.||.+|++++|+.+
T Consensus 64 ~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~ 117 (375)
T TIGR01910 64 EKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYAL 117 (375)
T ss_pred CCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHH
Confidence 47899999999998641 1 1258999999999999988
No 25
>PRK06837 acetylornithine deacetylase; Provisional
Probab=94.88 E-value=0.069 Score=46.65 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=36.0
Q ss_pred eEEecCCCCCCCCCCCCeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH--HHh
Q 037601 2 QGGLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 2 ~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a--f~~ 56 (151)
+|.++|.+ ++.|+|++.+|+|+++..+ | +..|+.|+-+|++++|..+ |.+
T Consensus 87 ~a~~~g~~-----~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~ 155 (427)
T PRK06837 87 VGTYRPAG-----KTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRA 155 (427)
T ss_pred EEEecCCC-----CCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHH
Confidence 45565532 2247899999999998642 1 1249999999999999977 554
No 26
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=94.86 E-value=0.055 Score=45.95 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=34.0
Q ss_pred eEEecCCCCCCCCCCCCeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH
Q 037601 2 QGGLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 2 ~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a 53 (151)
+|+++|.+. .++|++.+|+|+++... | +..|+-|+-.|++++|+.+
T Consensus 67 ~~~~~g~~~------~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~ 129 (400)
T PRK13983 67 VAKIPGGDG------KRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLAL 129 (400)
T ss_pred EEEecCCCC------CCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHH
Confidence 466666321 36899999999998642 0 1268999999999999876
No 27
>PRK08596 acetylornithine deacetylase; Validated
Probab=94.72 E-value=0.073 Score=46.39 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=37.7
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH--HHh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a--f~~ 56 (151)
|+++++|.+. ...|+|++.+|+|+++..+ | +..|+.|+-+|++++|..+ |.+
T Consensus 65 via~~~g~~~----~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~ 135 (421)
T PRK08596 65 VVGVKKGTES----DAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHE 135 (421)
T ss_pred EEEEecCCCC----CCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHH
Confidence 4677777432 1236899999999987542 1 2289999999999999988 654
No 28
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.57 E-value=0.07 Score=44.72 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=30.1
Q ss_pred CeEEEEeecccccCCCC----------CCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAAPA----------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~~----------~~~gaddn~sg~~~lle~a 53 (151)
+.|++.+|+|+++.... +..|+.|+-+|++++|.++
T Consensus 62 ~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~ 107 (352)
T PRK13007 62 SRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLA 107 (352)
T ss_pred CeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHH
Confidence 46999999999986421 3489999999999999988
No 29
>PRK09104 hypothetical protein; Validated
Probab=94.55 E-value=0.058 Score=47.62 Aligned_cols=51 Identities=14% Similarity=0.342 Sum_probs=37.3
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCC---------------C------CC-CCCCCchhHHHHHHHHH--HHh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAP---------------A------LS-VGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~---------------~------~~-~gaddn~sg~~~lle~a--f~~ 56 (151)
|+++++|.+. ..|+|++.+|+|+.+..+ + ++ .|+.|+-.|++++|+.+ |.+
T Consensus 71 l~a~~~g~~~-----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~ 145 (464)
T PRK09104 71 VVAHHEGPTG-----DAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKA 145 (464)
T ss_pred EEEEecCCCC-----CCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 3566766432 248899999999986532 0 22 68999999999999998 655
No 30
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=94.29 E-value=0.089 Score=45.31 Aligned_cols=45 Identities=29% Similarity=0.355 Sum_probs=33.1
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~ 56 (151)
++++++|.++ .|.|++.+|+|+++.. |--|+-.|++++|+.+ |.+
T Consensus 64 l~a~~~g~~~------~~~l~l~gH~DtVp~~-----g~~dg~~Gvaa~l~a~~~l~~ 110 (412)
T PRK12892 64 VFGRLPGPGP------GPALLVGSHLDSQNLG-----GRYDGALGVVAGLEAARALNE 110 (412)
T ss_pred EEEEecCCCC------CCeEEEEccccCCCCC-----CcccchHHHHHHHHHHHHHHH
Confidence 4677877432 2679999999999763 3345667899999998 554
No 31
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=94.17 E-value=0.086 Score=46.93 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=35.0
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCC------------------C--CCCCCC---CchhHHHHHHHHH
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAP------------------A--LSVGSD---SNGSGVVALLEIV 53 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~------------------~--~~~gad---dn~sg~~~lle~a 53 (151)
+++++||..+. +..|.|++.+|+|+++..+ + +..|+- |+..|++++|+++
T Consensus 49 ~~~~~~~~~g~---~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~ 121 (477)
T TIGR01893 49 VLIRKPATPGY---ENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAIL 121 (477)
T ss_pred EEEEEcCCCCC---CCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHH
Confidence 46778875321 2257899999999996532 1 226663 8899999999876
No 32
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.06 E-value=0.13 Score=44.43 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=36.2
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCC-C--------------CCCCCCCchhHHHHHHHHH--HHh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAP-A--------------LSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~-~--------------~~~gaddn~sg~~~lle~a--f~~ 56 (151)
++|+++|... .|.|++.+|+|+++... | +-.|+-|+=+|++++|..+ +.+
T Consensus 74 lia~~~g~~~------~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~ 140 (427)
T PRK13013 74 LVARRQGARD------GDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLA 140 (427)
T ss_pred EEEEecCCCC------CCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHH
Confidence 3566666321 37899999999997531 1 1158999999999999988 554
No 33
>PRK08262 hypothetical protein; Provisional
Probab=94.02 E-value=0.061 Score=47.76 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=30.4
Q ss_pred CCeEEEEeecccccCCC-----C--------------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAP-----A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~-----~--------------~~~gaddn~sg~~~lle~a 53 (151)
.++|++.+|+|+++..+ | +..|+.|+-+|++++|..+
T Consensus 111 ~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~ 166 (486)
T PRK08262 111 LKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAA 166 (486)
T ss_pred CCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHH
Confidence 37899999999997642 1 1269999999999999988
No 34
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=93.86 E-value=0.13 Score=43.03 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=31.4
Q ss_pred CCeEEEEeecccccCCC------C----------CCCCCCCchhHHHHHHHHH--HHh
Q 037601 17 LPTIAIVASYDTFGAAP------A----------LSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~------~----------~~~gaddn~sg~~~lle~a--f~~ 56 (151)
.|+|++.+|+|+++..+ . +..|+-|+=+|++++|.++ +.+
T Consensus 58 ~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~ 115 (364)
T TIGR01892 58 AGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAA 115 (364)
T ss_pred CCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHh
Confidence 37899999999997631 1 2278999999999999998 554
No 35
>PRK07907 hypothetical protein; Provisional
Probab=93.82 E-value=0.085 Score=46.37 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=35.2
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a 53 (151)
|+++++|.. ..|+|++.+|+|+++..+ | +-.|+-|+-+|++++|..+
T Consensus 73 l~a~~~~~~------~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~ 136 (449)
T PRK07907 73 VIGTRPAPP------GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAAL 136 (449)
T ss_pred EEEEecCCC------CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHH
Confidence 356666632 147899999999997531 1 2269999999999999888
No 36
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=93.74 E-value=0.15 Score=43.84 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=34.7
Q ss_pred eEEecCCCCCCCCCCCCeEEEEeecccccCCC---------------C--CCCCCCCchhHHHHHHHHH--HHh
Q 037601 2 QGGLQGLKADGDANQLPTIAIVASYDTFGAAP---------------A--LSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 2 ~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~---------------~--~~~gaddn~sg~~~lle~a--f~~ 56 (151)
+++++|.+. ..|+|++.+|+|+++..+ + +..|+.|+=+|++++|.++ +.+
T Consensus 61 ~~~~~g~~~-----~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~ 129 (400)
T TIGR01880 61 VLTWPGSNP-----ELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKA 129 (400)
T ss_pred EEEEecCCC-----CCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHH
Confidence 455666332 247899999999997531 0 2268888888988888887 544
No 37
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=92.66 E-value=0.13 Score=38.79 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=26.4
Q ss_pred EEEeecccccC-----CC--------C--CCCCCCCchhHHHHHHHHH--HH
Q 037601 21 AIVASYDTFGA-----AP--------A--LSVGSDSNGSGVVALLEIV--FA 55 (151)
Q Consensus 21 v~~ahyD~~g~-----~~--------~--~~~gaddn~sg~~~lle~a--f~ 55 (151)
++.||+|+++. .+ + +..|++|+..|+++.|.++ |.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~ 52 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALK 52 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHH
Confidence 57899999992 11 0 2479999999999999999 55
No 38
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=92.27 E-value=0.24 Score=41.99 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=30.3
Q ss_pred CeEEEEeecccccCC-C-----C--CCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAA-P-----A--LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~-~-----~--~~~gaddn~sg~~~lle~a 53 (151)
|+|++.+|||+++.. | + +..|+.|+-+|++++|+.+
T Consensus 60 ~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~ 103 (348)
T PRK04443 60 PLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAA 103 (348)
T ss_pred CEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHH
Confidence 789999999999642 1 2 3489999999999999998
No 39
>PRK08652 acetylornithine deacetylase; Provisional
Probab=92.20 E-value=0.17 Score=42.09 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=30.9
Q ss_pred CCeEEEEeecccccCCCC--------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAPA--------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~~--------~~~gaddn~sg~~~lle~a 53 (151)
.|.|++.+|+|+++.... +..|+-|+-+|++++|+.+
T Consensus 55 ~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~ 99 (347)
T PRK08652 55 KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLAL 99 (347)
T ss_pred CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHH
Confidence 378999999999976321 3479999999999999998
No 40
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=92.18 E-value=0.22 Score=44.66 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=25.4
Q ss_pred ecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHhh
Q 037601 5 LQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAEL 57 (151)
Q Consensus 5 l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~~ 57 (151)
+||.. .+.|++++|..|=+ -|+||-||++++.+|| ++++
T Consensus 124 ipG~s-------~~EillsthiCHPs-------mANdnLSG~~v~~~La~~L~~~ 164 (386)
T PF09940_consen 124 IPGES-------DEEILLSTHICHPS-------MANDNLSGPAVLTFLAKWLKQL 164 (386)
T ss_dssp E--SS-------S-EEEEEEE----S--------TTTTHHHHHHHHHHHHHHTTS
T ss_pred ecCCC-------CCeEEEEEeccCcc-------cccccccHHHHHHHHHHHHhcC
Confidence 57843 36699999999965 4899999999999999 5543
No 41
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=91.97 E-value=0.34 Score=40.92 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=29.5
Q ss_pred CCeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a 53 (151)
.|.|++.+|+|+++... | +..|+.||-+|++++|+.+
T Consensus 58 ~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~ 111 (375)
T PRK13009 58 GPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAA 111 (375)
T ss_pred CCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHH
Confidence 47899999999997542 1 2268889999999999887
No 42
>PRK13004 peptidase; Reviewed
Probab=91.81 E-value=0.33 Score=41.87 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=30.8
Q ss_pred CeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH--HHh
Q 037601 18 PTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a--f~~ 56 (151)
|+|++.+|+|+++... | +..|+.|+-+|++++|..+ +.+
T Consensus 70 ~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~ 127 (399)
T PRK13004 70 KLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKD 127 (399)
T ss_pred cEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHh
Confidence 7899999999997531 1 2258889999999999988 554
No 43
>PRK07473 carboxypeptidase; Provisional
Probab=91.73 E-value=0.42 Score=41.29 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=29.5
Q ss_pred CCeEEEEeeccccc-CC-----C-----C--CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFG-AA-----P-----A--LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g-~~-----~-----~--~~~gaddn~sg~~~lle~a 53 (151)
.|.|++.+|+|+++ .. | + +-.|+-|+-+|++++|..+
T Consensus 75 ~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~ 124 (376)
T PRK07473 75 EPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAI 124 (376)
T ss_pred CCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHH
Confidence 47899999999883 22 1 1 3389999999999999887
No 44
>PRK08201 hypothetical protein; Provisional
Probab=91.64 E-value=0.37 Score=42.41 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=29.9
Q ss_pred CCeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a 53 (151)
.|+|++.+|+|+.+..+ | +-.|+.|+=+|++++|+.+
T Consensus 79 ~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~ 132 (456)
T PRK08201 79 KPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAV 132 (456)
T ss_pred CCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHH
Confidence 47899999999987532 1 1279999999999999887
No 45
>PRK07338 hypothetical protein; Provisional
Probab=91.48 E-value=0.28 Score=42.08 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=28.7
Q ss_pred CeEEEEeecccccCC--C---------C--CCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAA--P---------A--LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~--~---------~--~~~gaddn~sg~~~lle~a 53 (151)
+.|++.+|||+++.. | + +-.|+-|+-+|++++|..+
T Consensus 93 ~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~ 141 (402)
T PRK07338 93 RQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAAL 141 (402)
T ss_pred ccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHH
Confidence 569999999999652 1 1 2268899999999999988
No 46
>PRK07522 acetylornithine deacetylase; Provisional
Probab=91.37 E-value=0.48 Score=40.17 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=29.0
Q ss_pred CCeEEEEeecccccCCC------C----------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAP------A----------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~------~----------~~~gaddn~sg~~~lle~a 53 (151)
.|+|++.+|+|+++..+ . +..|+-|+=+|++++|+++
T Consensus 64 ~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~ 116 (385)
T PRK07522 64 RGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAV 116 (385)
T ss_pred CCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHH
Confidence 37899999999997532 1 2268888888999999888
No 47
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=91.19 E-value=0.24 Score=41.81 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=29.2
Q ss_pred CeEEEEeecccccCC--C-----C-CCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAA--P-----A-LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~--~-----~-~~~gaddn~sg~~~lle~a 53 (151)
|.|++.+|+|+++.. + . +-.|+.|+-+|++++|+.+
T Consensus 61 ~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~ 104 (346)
T PRK00466 61 GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAA 104 (346)
T ss_pred CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHH
Confidence 569999999999752 1 1 3389999999999999888
No 48
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=90.88 E-value=0.54 Score=39.90 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=30.3
Q ss_pred CeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH--HHh
Q 037601 18 PTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a--f~~ 56 (151)
|.|++.+|+|+++... | +..|+.|+-.|++++|..+ +.+
T Consensus 60 ~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~ 117 (377)
T PRK08588 60 PVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKE 117 (377)
T ss_pred ceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHH
Confidence 7899999999998631 1 1268889999999988777 544
No 49
>PRK06446 hypothetical protein; Provisional
Probab=90.12 E-value=0.54 Score=41.26 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=29.7
Q ss_pred CCeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a 53 (151)
.|+|++.+|+|+.+..+ | +--||-|+-+|++++|..+
T Consensus 62 ~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~ 115 (436)
T PRK06446 62 KKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAI 115 (436)
T ss_pred CCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHH
Confidence 37899999999987532 1 2279999999999999877
No 50
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=90.09 E-value=0.41 Score=41.21 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=29.5
Q ss_pred CCeEEEEeecccccCCC-------------------------C--CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAP-------------------------A--LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~-------------------------~--~~~gaddn~sg~~~lle~a 53 (151)
.++|++.+|+|+++..+ + +..|+-|+-+|++++|..+
T Consensus 52 ~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~ 115 (373)
T TIGR01900 52 ASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLA 115 (373)
T ss_pred CCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHH
Confidence 36799999999996521 0 2278989999999999988
No 51
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=89.60 E-value=0.46 Score=39.88 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=31.5
Q ss_pred CCeEEEEeecccccCCC------C--CCCCCCCchhHHHHHHHHH--HHh
Q 037601 17 LPTIAIVASYDTFGAAP------A--LSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~------~--~~~gaddn~sg~~~lle~a--f~~ 56 (151)
.|.|++.+|||+++..- + +..|+-|+-+|++++|+.+ |.+
T Consensus 50 ~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~ 99 (336)
T TIGR01902 50 HKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNE 99 (336)
T ss_pred CceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHh
Confidence 48899999999996321 1 3379999999999999887 654
No 52
>PRK05111 acetylornithine deacetylase; Provisional
Probab=89.18 E-value=0.86 Score=38.71 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=27.4
Q ss_pred CeEEEEeecccccCCCC----------------CCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAAPA----------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~~----------------~~~gaddn~sg~~~lle~a 53 (151)
+.|++.+|+|+++..+. +..|+-|+=+|++++|+.+
T Consensus 72 ~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~ 123 (383)
T PRK05111 72 GGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEAL 123 (383)
T ss_pred CeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHH
Confidence 56999999999975320 2267888877899988887
No 53
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=88.78 E-value=0.44 Score=43.11 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=27.0
Q ss_pred CeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a 53 (151)
.+|.|+||+||--+ |+.||=-|+++-.|++
T Consensus 190 ~vv~i~AH~DHW~~------G~tDN~lg~~~AV~~~ 219 (486)
T COG4882 190 GVVLIGAHLDHWYT------GFTDNILGVAQAVETA 219 (486)
T ss_pred CceEEeechhhhhh------cccchhhhHHHHHHHH
Confidence 57999999999964 9999999999888888
No 54
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=88.15 E-value=1.3 Score=40.18 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=28.4
Q ss_pred CCeEEEEeecccccCCC----------C----------CCCCC---CCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAP----------A----------LSVGS---DSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~----------~----------~~~ga---ddn~sg~~~lle~a 53 (151)
.|.|++.+|+|+++... + +..|+ .||+.|++++|.++
T Consensus 68 ~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l 127 (485)
T PRK15026 68 RKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL 127 (485)
T ss_pred CCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH
Confidence 47899999999996431 1 12777 59999999988766
No 55
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=87.86 E-value=0.81 Score=39.00 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=29.6
Q ss_pred CeEEEEeecccccCCC-C---------------CCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAAP-A---------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~-~---------------~~~gaddn~sg~~~lle~a 53 (151)
|+|++.+|+|+++... + +..|+-|+-.|++++|+.+
T Consensus 75 ~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~ 126 (394)
T PRK08651 75 PHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAF 126 (394)
T ss_pred ceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHH
Confidence 7899999999997642 1 2268889999999999988
No 56
>PRK07079 hypothetical protein; Provisional
Probab=87.50 E-value=1.1 Score=39.74 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=29.4
Q ss_pred CCeEEEEeecccccCC--------CC----------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAA--------PA----------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~--------~~----------~~~gaddn~sg~~~lle~a 53 (151)
.|.|++.+|+|+++.. +. +-.|+-|+-+|+++.|..+
T Consensus 85 ~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~ 139 (469)
T PRK07079 85 LPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAAL 139 (469)
T ss_pred CCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHH
Confidence 4789999999999752 11 1279999999999888777
No 57
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=87.19 E-value=1.4 Score=37.38 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=12.7
Q ss_pred CeEEEEeecccccC
Q 037601 18 PTIAIVASYDTFGA 31 (151)
Q Consensus 18 ~~iv~~ahyD~~g~ 31 (151)
|.|++.+|+|+++.
T Consensus 57 ~~i~l~gH~DtVp~ 70 (363)
T TIGR01891 57 PVVALRADMDALPI 70 (363)
T ss_pred CEEEEEeccCCCCc
Confidence 78999999999974
No 58
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=86.78 E-value=1.2 Score=38.27 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=29.4
Q ss_pred CeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a 53 (151)
|+|++.+|+|+++... | +..|+-|+-.|++++|..+
T Consensus 68 ~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~ 120 (395)
T TIGR03320 68 KLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAG 120 (395)
T ss_pred cEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHH
Confidence 7899999999997531 1 2389999999999999877
No 59
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=86.44 E-value=1.8 Score=37.34 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=30.7
Q ss_pred CeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH--HHh
Q 037601 18 PTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a--f~~ 56 (151)
++|++.+|+|+++... | +..|+-|+=.|++++|..+ |.+
T Consensus 68 ~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~ 125 (395)
T TIGR03526 68 KLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKD 125 (395)
T ss_pred CEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHH
Confidence 7899999999998532 1 2279999999999999887 544
No 60
>PRK08554 peptidase; Reviewed
Probab=86.21 E-value=1.5 Score=38.94 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=29.4
Q ss_pred CeEEEEeecccccCCC--C--------------CCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAAP--A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~--~--------------~~~gaddn~sg~~~lle~a 53 (151)
+.|++.+|+|+++..+ | +-.|+-|+-+|++++|..+
T Consensus 64 ~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~ 115 (438)
T PRK08554 64 PKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLAL 115 (438)
T ss_pred CEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHH
Confidence 6799999999997542 1 2289999999999988777
No 61
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=85.69 E-value=1.6 Score=37.68 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=30.1
Q ss_pred CeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a 53 (151)
|.|++.+|||+++..+ | +--|+-|+=.|+++.+..+
T Consensus 76 ~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~ 128 (409)
T COG0624 76 PTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYAL 128 (409)
T ss_pred CeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHH
Confidence 8899999999998754 1 1268999999999999888
No 62
>PLN02280 IAA-amino acid hydrolase
Probab=84.27 E-value=2 Score=38.97 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=26.5
Q ss_pred CeEEEEeecccccCCC-----------CCCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAAP-----------ALSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~-----------~~~~gaddn~sg~~~lle~a 53 (151)
|+|++.||+|+++... +.-.|-+.+| +++++|.++
T Consensus 153 ~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~-~~A~~l~a~ 198 (478)
T PLN02280 153 PFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDA-HVAMLLGAA 198 (478)
T ss_pred CEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcH-HHHHHHHHH
Confidence 7899999999998632 1224566677 889998877
No 63
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=84.14 E-value=1.4 Score=39.24 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=28.8
Q ss_pred CCeEEEEeecccccCCC-C--------------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAP-A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~-~--------------~~~gaddn~sg~~~lle~a 53 (151)
.++|++.+|+|+.+... | +-.|+.|+-+|+++.|..+
T Consensus 78 ~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~ 129 (466)
T TIGR01886 78 DERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAM 129 (466)
T ss_pred CCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHH
Confidence 47899999999997531 1 2379999999888887776
No 64
>PLN02693 IAA-amino acid hydrolase
Probab=82.33 E-value=3 Score=37.16 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=26.8
Q ss_pred CCeEEEEeecccccCCC-----------CCCCCCCCchhHHHHHHHHH--HHh
Q 037601 17 LPTIAIVASYDTFGAAP-----------ALSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~-----------~~~~gaddn~sg~~~lle~a--f~~ 56 (151)
.|+|++.||+|+++... +.-.|-+.+| +++++|..+ +++
T Consensus 102 g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg-~~A~~l~Aa~~L~~ 153 (437)
T PLN02693 102 PPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDG-HVAMLLGAAKILQE 153 (437)
T ss_pred CCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchH-HHHHHHHHHHHHHh
Confidence 37899999999998642 1113445555 688888877 554
No 65
>PRK07205 hypothetical protein; Provisional
Probab=81.33 E-value=3.5 Score=36.16 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=29.8
Q ss_pred CCeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a 53 (151)
.|.|++.+|+|+++..+ | +-.|+.|+=.|++++|..+
T Consensus 75 ~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al 128 (444)
T PRK07205 75 EELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAV 128 (444)
T ss_pred CcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHH
Confidence 36799999999997632 1 1279999999999999877
No 66
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=80.93 E-value=2.3 Score=36.03 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=28.2
Q ss_pred CCeEEEEeecccccCCC---C--------------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~---~--------------~~~gaddn~sg~~~lle~a 53 (151)
.|+|++.+|+|+++..+ | +..|+-|+=.|++++|+.+
T Consensus 55 ~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~ 108 (370)
T TIGR01246 55 EPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAA 108 (370)
T ss_pred CcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHH
Confidence 48899999999997642 1 2267778888888887776
No 67
>PRK06156 hypothetical protein; Provisional
Probab=78.43 E-value=4.9 Score=36.42 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.6
Q ss_pred CCeEEEEeecccccCC-----------CC----------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAA-----------PA----------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~-----------~~----------~~~gaddn~sg~~~lle~a 53 (151)
.|.|++.+|+|.++.. +. +..|+.|+-.|++++|..+
T Consensus 109 ~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~ 166 (520)
T PRK06156 109 SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAM 166 (520)
T ss_pred CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHH
Confidence 3679999999999753 11 2278889999999887766
No 68
>PRK08737 acetylornithine deacetylase; Provisional
Probab=76.29 E-value=4.2 Score=35.02 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=28.4
Q ss_pred CeEEEEeecccccCCC-----C----------CCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAAP-----A----------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~-----~----------~~~gaddn~sg~~~lle~a 53 (151)
|.|++.+|+|+++... . +-.|+.|--+|++++|..+
T Consensus 64 ~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~ 114 (364)
T PRK08737 64 PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAA 114 (364)
T ss_pred CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHH
Confidence 6799999999997532 1 1159999988999998877
No 69
>PRK07318 dipeptidase PepV; Reviewed
Probab=72.37 E-value=8.8 Score=34.02 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=30.3
Q ss_pred CCeEEEEeecccccCCC-C--------------CCCCCCCchhHHHHHHHHH--HHh
Q 037601 17 LPTIAIVASYDTFGAAP-A--------------LSVGSDSNGSGVVALLEIV--FAE 56 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~-~--------------~~~gaddn~sg~~~lle~a--f~~ 56 (151)
.|.|++.+|+|+++... | +..|+-|+-+|++++|..+ +.+
T Consensus 79 ~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~ 135 (466)
T PRK07318 79 EEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKE 135 (466)
T ss_pred CCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHH
Confidence 37899999999997531 1 2278889988888888877 544
No 70
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=67.79 E-value=8.7 Score=34.25 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=28.4
Q ss_pred CCeEEEEeecccccCCC-C--------------CCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAP-A--------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~-~--------------~~~gaddn~sg~~~lle~a 53 (151)
.|+|++.+|+|+++..+ | +-.|+-|+-.|++++|+.+
T Consensus 67 ~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~ 118 (447)
T TIGR01887 67 EEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAM 118 (447)
T ss_pred CCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHH
Confidence 37899999999997532 1 2278888888888888877
No 71
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=63.08 E-value=6.5 Score=34.58 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=31.1
Q ss_pred CCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH
Q 037601 17 LPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a 53 (151)
..+.|..+|||+--..++...||.|-|--+|.+|++|
T Consensus 117 ~r~lVlachydsk~~p~~~~vgatdsAvpcamll~la 153 (338)
T KOG3946|consen 117 SRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLA 153 (338)
T ss_pred chheeeecccccccCCCcceEeeccccccHHHHHHHH
Confidence 5679999999997443344689999999999999999
No 72
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=58.78 E-value=9.1 Score=33.36 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=18.3
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccC
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGA 31 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~ 31 (151)
++|+++|... .|.|++.||.|++|.
T Consensus 48 lia~~~g~~~------~~~v~l~aHmDevG~ 72 (343)
T TIGR03106 48 IRATLPGREA------TPARAVVTHLDTLGA 72 (343)
T ss_pred EEEEECCCCC------CCeEEEEEeeccccc
Confidence 4566767321 367999999999985
No 73
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=53.60 E-value=9.4 Score=32.68 Aligned_cols=17 Identities=24% Similarity=0.618 Sum_probs=14.3
Q ss_pred CCeEEEE-eecccccCCC
Q 037601 17 LPTIAIV-ASYDTFGAAP 33 (151)
Q Consensus 17 ~~~iv~~-ahyD~~g~~~ 33 (151)
...+|++ .||||.|+-+
T Consensus 59 id~vvlSHgH~DH~GGL~ 76 (259)
T COG1237 59 IDAVVLSHGHYDHTGGLP 76 (259)
T ss_pred CcEEEEeCCCccccCchH
Confidence 5778888 9999999754
No 74
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=53.32 E-value=29 Score=31.70 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=33.7
Q ss_pred EEecCCCCCCCCCCCCeEEEEeecccccCCCC-----------------CCCCCCCchhHHHHHHHHH
Q 037601 3 GGLQGLKADGDANQLPTIAIVASYDTFGAAPA-----------------LSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 3 g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~-----------------~~~gaddn~sg~~~lle~a 53 (151)
-.++|+++ .++-|++.+|.|.++.-.. +..||.|.=+=+++.||.+
T Consensus 79 ~T~~GS~P-----~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAi 141 (420)
T KOG2275|consen 79 YTWLGSDP-----ELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAI 141 (420)
T ss_pred EEeeCCCC-----CccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHH
Confidence 35678764 3788999999999986421 2368877766668888888
No 75
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=51.46 E-value=14 Score=31.55 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=15.7
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccC
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGA 31 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~ 31 (151)
|+++++|.. ..|.|+|.||.|.+|.
T Consensus 3 vi~~~~g~~------~~~~vmi~AHmDEiG~ 27 (292)
T PF05343_consen 3 VIARKKGKE------GGPKVMIAAHMDEIGF 27 (292)
T ss_dssp EEEEECSSC------SSSEEEEEEE--B-EE
T ss_pred EEEEECCCC------CCceEEEEEccceeeE
Confidence 467888821 1478999999998873
No 76
>PRK09961 exoaminopeptidase; Provisional
Probab=49.87 E-value=14 Score=32.04 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=12.4
Q ss_pred CeEEEEeecccccC
Q 037601 18 PTIAIVASYDTFGA 31 (151)
Q Consensus 18 ~~iv~~ahyD~~g~ 31 (151)
|.|++.||.|++|.
T Consensus 55 ~~v~l~aHmDevg~ 68 (344)
T PRK09961 55 PKVMICAHMDEVGF 68 (344)
T ss_pred CEEEEEeccceece
Confidence 57999999999984
No 77
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=48.55 E-value=14 Score=32.74 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=18.5
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccC
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGA 31 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~ 31 (151)
|+++++|.+. .+-|.|+||.|.+|.
T Consensus 47 lia~~~g~~g------~~~imi~AHmDEiG~ 71 (355)
T COG1363 47 LIAKKGGKNG------PPKVMIAAHMDEIGF 71 (355)
T ss_pred EEEEecCCCC------CccEEEEeecceeee
Confidence 5778888322 245999999999984
No 78
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=41.54 E-value=24 Score=30.90 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=12.2
Q ss_pred CeEEEEeecccccC
Q 037601 18 PTIAIVASYDTFGA 31 (151)
Q Consensus 18 ~~iv~~ahyD~~g~ 31 (151)
|.|++.||.|.+|.
T Consensus 55 ~~vml~AHmDeVGf 68 (350)
T TIGR03107 55 PRVMVAAHMDEVGF 68 (350)
T ss_pred CEEEEEecccEeCE
Confidence 67999999999984
No 79
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=39.82 E-value=23 Score=32.97 Aligned_cols=20 Identities=40% Similarity=0.782 Sum_probs=17.7
Q ss_pred hhhhhhhhhcCCCCCCCcCC
Q 037601 132 GLDDLISLFRRPPSRKVETA 151 (151)
Q Consensus 132 ~l~~v~~~~~k~d~r~~~~~ 151 (151)
.+++|.+++|+||++|+|+.
T Consensus 536 ~yd~v~~l~r~~p~vk~k~~ 555 (555)
T KOG2526|consen 536 TYDGVVALIRRPPSVKIKMG 555 (555)
T ss_pred hHHHHHHHhccCccccccCC
Confidence 34999999999999999973
No 80
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=35.42 E-value=10 Score=27.25 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=12.5
Q ss_pred CCeEEEE-eecccccCC
Q 037601 17 LPTIAIV-ASYDTFGAA 32 (151)
Q Consensus 17 ~~~iv~~-ahyD~~g~~ 32 (151)
...||++ +|+||+|+.
T Consensus 44 i~~vi~TH~H~DH~ggl 60 (194)
T PF00753_consen 44 IDAVILTHAHPDHIGGL 60 (194)
T ss_dssp EEEEEESSSSHHHHTTH
T ss_pred eEEEEECcccccccccc
Confidence 4567777 999999874
No 81
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=34.59 E-value=19 Score=34.07 Aligned_cols=57 Identities=25% Similarity=0.248 Sum_probs=43.8
Q ss_pred CCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHHHHhhhcCCCcccchhhhccchhhHH
Q 037601 17 LPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIVFAELLIPCRHFVDETSIIRSVKDIF 78 (151)
Q Consensus 17 ~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~af~~~I~d~r~~v~~~~L~rNvkIIA 78 (151)
.+++|.+|-.|+.+--+.++.||+.==+|.+++|..| +++ -|.+ ..+.++||+-.+.
T Consensus 177 ~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa--~al--~r~p-ai~nl~rnV~f~~ 233 (596)
T KOG2657|consen 177 SKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAA--RAL--KRQP-AINNLNRNVFFAF 233 (596)
T ss_pred cceeeeeeecccccccccccCCccccchhHHHHHHHH--HHh--ccCc-ccccccceeEEEE
Confidence 5789999999999999999999999999999999888 322 1212 3456777766554
No 82
>PRK00685 metal-dependent hydrolase; Provisional
Probab=30.49 E-value=26 Score=27.43 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=12.5
Q ss_pred CCCeEEEE-eecccccC
Q 037601 16 QLPTIAIV-ASYDTFGA 31 (151)
Q Consensus 16 ~~~~iv~~-ahyD~~g~ 31 (151)
+...|+++ +|+||++.
T Consensus 40 ~id~vliTH~H~DH~~~ 56 (228)
T PRK00685 40 KVDYILLTHGHGDHLGD 56 (228)
T ss_pred cccEEEeCCCCcccccc
Confidence 35668888 99999974
No 83
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=27.50 E-value=35 Score=32.42 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=13.6
Q ss_pred CCeEEEE-eecccccCCCC
Q 037601 17 LPTIAIV-ASYDTFGAAPA 34 (151)
Q Consensus 17 ~~~iv~~-ahyD~~g~~~~ 34 (151)
+..|||+ ||+||.|..|-
T Consensus 235 lDAViiTHAHLDH~G~lP~ 253 (637)
T COG1782 235 LDAVIITHAHLDHCGFLPL 253 (637)
T ss_pred cceEEEeecccccccchhh
Confidence 3446666 99999998774
No 84
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=26.35 E-value=32 Score=24.96 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=13.3
Q ss_pred CCeEEEE-eecccccCCC
Q 037601 17 LPTIAIV-ASYDTFGAAP 33 (151)
Q Consensus 17 ~~~iv~~-ahyD~~g~~~ 33 (151)
...|+++ .|.||+++.+
T Consensus 42 i~~i~iTH~H~DH~~g~~ 59 (183)
T smart00849 42 IDAIILTHGHPDHIGGLP 59 (183)
T ss_pred hcEEEecccCcchhccHH
Confidence 4568888 9999998753
No 85
>PF14114 DUF4286: Domain of unknown function (DUF4286)
Probab=25.19 E-value=60 Score=23.17 Aligned_cols=21 Identities=14% Similarity=0.479 Sum_probs=16.3
Q ss_pred ceeecccccccccChhHHHHHHHhhh
Q 037601 85 IFKFLQTTVAWLSNPSYIRSWLDLLS 110 (151)
Q Consensus 85 iY~it~~~gsl~I~~~~L~s~l~~LS 110 (151)
|||+| ..|+++--..|++|+.
T Consensus 1 IYNvT-----~~v~~~v~~~wl~W~k 21 (98)
T PF14114_consen 1 IYNVT-----FNVDEEVHEEWLNWMK 21 (98)
T ss_pred CEEEE-----EEeCHHHHHHHHHHHH
Confidence 57766 4588888899999993
No 86
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=24.60 E-value=86 Score=28.33 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=23.9
Q ss_pred CeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH
Q 037601 18 PTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV 53 (151)
Q Consensus 18 ~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a 53 (151)
..|+++||.=|=. =|+||-||+|.+.=+|
T Consensus 179 ~eiLlst~lCHPS-------maNdn~SG~all~~la 207 (435)
T COG4310 179 DEILLSTYLCHPS-------MANDNLSGLALLTFLA 207 (435)
T ss_pred ceeeeeecccChh-------hccCccchHHHHHHHH
Confidence 5599999987754 4789999999887777
No 87
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=24.21 E-value=30 Score=26.27 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=12.8
Q ss_pred CCeEEEE-eecccccCCC
Q 037601 17 LPTIAIV-ASYDTFGAAP 33 (151)
Q Consensus 17 ~~~iv~~-ahyD~~g~~~ 33 (151)
..+|+++ .|+||.|+..
T Consensus 63 i~~vilTH~H~DH~gg~~ 80 (252)
T COG0491 63 VDAILLTHGHFDHIGGAA 80 (252)
T ss_pred hheeeecCCchhhhccHH
Confidence 3567777 9999999753
No 88
>PRK04286 hypothetical protein; Provisional
Probab=23.23 E-value=52 Score=27.78 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.3
Q ss_pred CCeEEEE-eecccccC
Q 037601 17 LPTIAIV-ASYDTFGA 31 (151)
Q Consensus 17 ~~~iv~~-ahyD~~g~ 31 (151)
...|++| .|+||++.
T Consensus 66 id~IliTH~H~DHi~g 81 (298)
T PRK04286 66 ADVITISHYHYDHHTP 81 (298)
T ss_pred CCEEEecCCccccCCC
Confidence 4678888 99999954
No 89
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=22.99 E-value=56 Score=28.57 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=32.2
Q ss_pred hhccchhhHHhhhhhhceeecccccccccChhHHHHHHHhhhcCCCC
Q 037601 69 SIIRSVKDIFMVTKERIFKFLQTTVAWLSNPSYIRSWLDLLSQTPRV 115 (151)
Q Consensus 69 ~L~rNvkIIAESLa~~iY~it~~~gsl~I~~~~L~s~l~~LS~~PRa 115 (151)
..-.-.+++||.-+..++-=---....-.|.+|+.||+.+|..-+|+
T Consensus 232 r~yA~eel~aEi~a~~~c~~lgi~p~~~~haayigswl~Vl~~d~ra 278 (316)
T COG4227 232 REYAFEELVAEIGAAFLCATLGIVPTVRDHAAYIGSWLEVLREDNRA 278 (316)
T ss_pred hHHHHHHHHHHHhhhheecccccCCchhhHHHHHHHHHHHHhhchHH
Confidence 44556677888777765511101144458999999999999998875
No 90
>PRK02113 putative hydrolase; Provisional
Probab=21.57 E-value=44 Score=26.73 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=13.3
Q ss_pred CCeEEEE-eecccccCCC
Q 037601 17 LPTIAIV-ASYDTFGAAP 33 (151)
Q Consensus 17 ~~~iv~~-ahyD~~g~~~ 33 (151)
...|+|+ .|+||+++.+
T Consensus 67 id~I~lTH~H~DH~~gl~ 84 (252)
T PRK02113 67 IDAVLITHEHYDHVGGLD 84 (252)
T ss_pred cCEEEECCCChhhhCCHH
Confidence 4568888 9999997643
No 91
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=21.39 E-value=1.8e+02 Score=26.82 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=31.5
Q ss_pred CeEEecCCCCCCCCCCCCeEEEEeecccccCCCCCCCCCCCchhHHHHHHHHH--HHhh
Q 037601 1 MQGGLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIV--FAEL 57 (151)
Q Consensus 1 i~g~l~G~~~~~~~~~~~~iv~~ahyD~~g~~~~~~~gaddn~sg~~~lle~a--f~~~ 57 (151)
+.|.+..-+. ...|.||+++-|+... | +-|..|++.+|.+| |++.
T Consensus 6 vy~i~rapR~----d~tEaivl~~~~~~~~-------~-~~n~~~v~l~lal~~~~~~~ 52 (504)
T PF04114_consen 6 VYGILRAPRG----DGTEAIVLVVPWRDSD-------G-EYNAGGVALALALARYFRRQ 52 (504)
T ss_pred EEEEEecCCC----CCceeEEEEEecCCCC-------c-ccchhhHHHHHHHHHHhhhc
Confidence 3566665332 2368899999987542 2 56788999999999 6654
No 92
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=21.22 E-value=39 Score=29.21 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=28.3
Q ss_pred HHHHhhhcCCCCccccCC--CchHHHHHHHhhhhhhhhhc
Q 037601 104 SWLDLLSQTPRVAPFISK--NDPFIMALKKGLDDLISLFR 141 (151)
Q Consensus 104 s~l~~LS~~PRaaqll~k--d~~~~~~L~~~l~~v~~~~~ 141 (151)
|+++||..+-|-.+|++. ..|.-..+..|+.-|..-|.
T Consensus 70 sflnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~ 109 (341)
T PF13434_consen 70 SFLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLD 109 (341)
T ss_dssp SHHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGT
T ss_pred cHHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999854 55666788888866655553
No 93
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=20.97 E-value=60 Score=25.84 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=12.5
Q ss_pred CCeEEEE-eecccccCC
Q 037601 17 LPTIAIV-ASYDTFGAA 32 (151)
Q Consensus 17 ~~~iv~~-ahyD~~g~~ 32 (151)
...|+|+ +|+||+++.
T Consensus 57 id~i~iTH~H~DHi~gl 73 (238)
T TIGR03307 57 LQAILLTHYHMDHVQGL 73 (238)
T ss_pred CCEEEEecCchhhhcch
Confidence 4568888 999999654
Done!