BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037603
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3W03|A Chain A, Xlf-Xrcc4 Complex
pdb|3W03|B Chain B, Xlf-Xrcc4 Complex
Length = 235
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 5 SATQQKESGIFASAWGWLRVFPCSLKAKVTNITKSIKKLGQDDPRRVTH 53
S ++ E G+ W WL++ SL AKV ITK L D ++V H
Sbjct: 1 SGMEELEQGLLMQPWAWLQLAENSLLAKVF-ITKQGYALLVSDLQQVWH 48
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 253 KDKSFLQKYK--SVLNSKTQEDNLANFARWEPGHGKFRLRHPWQQYLK 298
+D+ FL+ K VLN+K + L N R E +GK+ +H + +K
Sbjct: 852 EDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMK 899
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 362 ANSHIEASKKAVKDLENALKEASLNTLDFQAIVPAATVASTLIEIV 407
N H+ AS K+L+ +K+ + +DF+ +V A + ++E +
Sbjct: 261 TNEHVNASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDI 306
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 253 KDKSFLQKYK--SVLNSKTQEDNLANFARWEPGHGKFRLRHPWQQYLK 298
+D+ FL+ K VLN+K + L N R E +GK+ +H + +K
Sbjct: 754 EDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMK 801
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 362 ANSHIEASKKAVKDLENALKEASLNTLDFQAIVPAATVASTLIEIV 407
N H+ AS K+L+ +K+ + +DF+ +V A + ++E +
Sbjct: 261 TNEHVNASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDI 306
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 362 ANSHIEASKKAVKDLENALKEASLNTLDFQAIVPAATVASTLIEIV 407
N H+ AS K+L+ +K+ + +DF+ +V A + ++E +
Sbjct: 264 TNEHVNASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDI 309
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 362 ANSHIEASKKAVKDLENALKEASLNTLDFQAIVPAATVASTLIEIV 407
N H+ AS K+L+ +K+ + +DF+ +V A + ++E +
Sbjct: 261 TNEHVNASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDI 306
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 362 ANSHIEASKKAVKDLENALKEASLNTLDFQAIVPAATVASTLIEIV 407
N H+ AS K+L+ +K+ + +DF+ +V A + ++E +
Sbjct: 631 TNEHVNASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDI 676
>pdb|2QM4|A Chain A, Crystal Structure Of Human Xlf/cernunnos, A
Non-homologous End-joining Factor
pdb|2QM4|B Chain B, Crystal Structure Of Human Xlf/cernunnos, A
Non-homologous End-joining Factor
pdb|2QM4|C Chain C, Crystal Structure Of Human Xlf/cernunnos, A
Non-homologous End-joining Factor
pdb|2QM4|D Chain D, Crystal Structure Of Human Xlf/cernunnos, A
Non-homologous End-joining Factor
Length = 235
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 5 SATQQKESGIFASAWGWLRVFPCSLKAKVTNITKSIKKLGQDDPRRVTH 53
S ++ E G+ W WL++ SL AKV ITK L D ++V H
Sbjct: 1 SGXEELEQGLLXQPWAWLQLAENSLLAKVF-ITKQGYALLVSDLQQVWH 48
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 218 KLIASNLENLACYLEGFGDEYFQVNKSEEGGDVTKKDKSFLQKYKSVLNSKTQEDNLANF 277
KLI L+N Y GD +F V + ++ G ++ + LQ V S ++ D L +F
Sbjct: 126 KLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPL-DF 184
Query: 278 ARW---EPGHGKFRLRHPW 293
W +PG K+ PW
Sbjct: 185 VLWKKAKPGEPKW--DSPW 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,166,133
Number of Sequences: 62578
Number of extensions: 503501
Number of successful extensions: 1062
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 14
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)