Query 037603
Match_columns 490
No_of_seqs 328 out of 1497
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:36:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 5.5E-82 1.2E-86 654.3 40.8 381 41-421 1-406 (406)
2 KOG4711 Predicted membrane pro 100.0 1.3E-55 2.9E-60 473.0 18.0 410 20-430 59-597 (625)
3 PF04632 FUSC: Fusaric acid re 100.0 5.9E-26 1.3E-30 252.2 35.3 238 50-317 1-239 (650)
4 TIGR01666 YCCS hypothetical me 100.0 7.2E-25 1.6E-29 242.8 39.9 309 33-382 363-671 (704)
5 TIGR01667 YCCS_YHJK integral m 100.0 2.5E-25 5.3E-30 247.2 35.4 285 33-352 365-649 (701)
6 PRK10631 p-hydroxybenzoic acid 99.9 4.6E-25 9.9E-30 241.5 30.6 218 45-286 3-230 (652)
7 PRK11427 multidrug efflux syst 99.9 1.7E-20 3.7E-25 204.6 31.3 222 39-282 339-563 (683)
8 COG4129 Predicted membrane pro 99.7 2.3E-15 5.1E-20 153.3 30.2 161 52-233 11-171 (332)
9 COG1289 Predicted membrane pro 99.7 1.1E-15 2.3E-20 171.1 28.6 184 42-240 346-531 (674)
10 PRK11427 multidrug efflux syst 99.7 1.5E-14 3.3E-19 158.3 32.2 172 45-232 24-202 (683)
11 PF06081 DUF939: Bacterial pro 99.6 3.3E-14 7.1E-19 128.7 16.0 136 53-207 6-141 (141)
12 COG1289 Predicted membrane pro 99.6 1.6E-12 3.5E-17 145.7 32.8 166 47-224 7-176 (674)
13 PF13515 FUSC_2: Fusaric acid 99.6 2.7E-14 6E-19 126.0 14.1 118 74-203 8-128 (128)
14 PF10334 DUF2421: Protein of u 99.4 7.8E-11 1.7E-15 115.2 23.4 212 207-425 1-229 (229)
15 PF10337 DUF2422: Protein of u 99.3 2.9E-08 6.4E-13 106.6 35.3 267 39-315 4-314 (459)
16 PF04632 FUSC: Fusaric acid re 99.2 7.8E-08 1.7E-12 107.4 33.8 176 48-232 337-514 (650)
17 PF12805 FUSC-like: FUSC-like 98.8 3.3E-06 7.1E-11 85.2 26.8 176 185-381 70-253 (284)
18 TIGR01666 YCCS hypothetical me 98.7 9.5E-05 2.1E-09 83.2 36.6 172 49-234 6-177 (704)
19 TIGR01667 YCCS_YHJK integral m 98.7 2.2E-05 4.7E-10 88.5 30.8 292 49-381 6-309 (701)
20 PRK10631 p-hydroxybenzoic acid 97.9 0.017 3.7E-07 64.7 31.0 158 51-219 353-513 (652)
21 PF11168 DUF2955: Protein of u 96.8 0.043 9.3E-07 49.7 13.9 138 54-206 2-139 (140)
22 PF12732 YtxH: YtxH-like prote 84.0 4.4 9.5E-05 32.3 6.6 44 191-235 3-46 (74)
23 PF10011 DUF2254: Predicted me 79.5 33 0.00072 36.0 13.1 80 157-240 95-175 (371)
24 PF06081 DUF939: Bacterial pro 73.8 15 0.00033 33.0 7.6 48 74-122 92-139 (141)
25 PRK11677 hypothetical protein; 63.9 40 0.00087 30.3 7.9 40 191-230 8-48 (134)
26 PF06496 DUF1097: Protein of u 63.1 1.2E+02 0.0025 27.4 15.1 49 80-129 20-68 (144)
27 COG4980 GvpP Gas vesicle prote 62.9 27 0.00059 30.5 6.5 43 190-233 8-50 (115)
28 PF12841 YvrJ: YvrJ protein fa 62.0 18 0.0004 25.3 4.2 29 394-422 8-36 (38)
29 PF05478 Prominin: Prominin; 54.2 4.2E+02 0.009 31.0 22.8 40 193-234 153-192 (806)
30 PF06295 DUF1043: Protein of u 52.3 76 0.0016 28.1 7.7 39 191-229 4-43 (128)
31 COG5336 Uncharacterized protei 50.4 76 0.0016 27.5 6.9 25 100-124 46-70 (116)
32 TIGR02865 spore_II_E stage II 46.5 5.3E+02 0.011 30.0 30.6 119 104-237 189-329 (764)
33 PRK12821 aspartyl/glutamyl-tRN 45.8 3.1E+02 0.0068 29.7 12.1 32 93-124 94-125 (477)
34 PF06840 DUF1241: Protein of u 44.9 1.9E+02 0.0041 26.7 9.1 74 343-422 68-141 (154)
35 PF06123 CreD: Inner membrane 43.9 1.2E+02 0.0027 32.6 9.1 32 74-106 348-379 (430)
36 PRK09400 secE preprotein trans 41.9 1.4E+02 0.003 23.2 6.6 48 24-71 5-53 (61)
37 PF11744 ALMT: Aluminium activ 40.4 80 0.0017 33.8 7.0 41 164-206 43-83 (406)
38 PF13515 FUSC_2: Fusaric acid 39.9 63 0.0014 27.6 5.2 41 167-210 19-59 (128)
39 PRK11412 putative uracil/xanth 39.5 3.7E+02 0.0081 29.0 12.0 38 163-205 174-211 (433)
40 PF04286 DUF445: Protein of un 38.2 26 0.00056 35.9 2.9 21 104-124 344-364 (367)
41 PF00873 ACR_tran: AcrB/AcrD/A 36.2 8.3E+02 0.018 29.3 16.8 49 164-212 437-486 (1021)
42 PRK11715 inner membrane protei 33.9 1.9E+02 0.0042 31.2 8.6 27 80-106 359-385 (436)
43 PRK08055 chorismate mutase; Pr 32.5 4.4E+02 0.0095 25.0 14.8 61 294-358 84-144 (181)
44 COG4956 Integral membrane prot 31.9 2.6E+02 0.0057 28.8 8.6 27 102-128 3-30 (356)
45 COG0659 SUL1 Sulfate permease 31.3 2.1E+02 0.0045 32.0 8.7 18 191-208 393-410 (554)
46 KOG1172 Na+-independent Cl/HCO 30.9 2.4E+02 0.0051 33.1 9.0 108 84-203 372-489 (876)
47 PRK01100 putative accessory ge 28.5 3.5E+02 0.0076 26.0 8.8 57 50-107 35-91 (210)
48 PF11992 DUF3488: Domain of un 28.5 6.6E+02 0.014 25.7 15.5 11 80-90 26-36 (325)
49 TIGR02135 phoU_full phosphate 28.2 4.7E+02 0.01 24.0 10.1 93 330-426 113-205 (212)
50 PF14348 DUF4400: Domain of un 27.4 1.8E+02 0.0038 27.6 6.4 47 41-91 138-185 (198)
51 PF05313 Pox_P21: Poxvirus P21 26.9 2.4E+02 0.0052 26.7 6.8 17 185-201 140-156 (189)
52 COG4980 GvpP Gas vesicle prote 25.9 67 0.0015 28.1 2.9 18 107-124 8-25 (115)
53 COG0555 CysU ABC-type sulfate 25.6 7.1E+02 0.015 25.2 10.5 27 183-209 128-154 (274)
54 TIGR00930 2a30 K-Cl cotranspor 25.3 1.2E+03 0.027 27.8 14.3 28 93-121 139-166 (953)
55 smart00793 AgrB Accessory gene 25.3 3.9E+02 0.0084 25.0 8.3 60 47-107 20-79 (184)
56 PF10031 DUF2273: Small integr 24.8 1.3E+02 0.0028 22.4 3.9 20 104-123 8-27 (51)
57 KOG1636 DNA polymerase delta p 24.2 73 0.0016 31.2 3.1 22 409-430 11-32 (260)
58 KOG3498 Preprotein translocase 24.0 3.5E+02 0.0077 21.2 6.1 49 24-72 6-55 (67)
59 COG2733 Predicted membrane pro 24.0 34 0.00073 36.1 0.8 21 104-124 391-411 (415)
60 PRK11660 putative transporter; 23.7 4.4E+02 0.0096 29.3 9.7 17 191-207 424-440 (568)
61 PF03176 MMPL: MMPL family; I 23.6 4.9E+02 0.011 26.3 9.4 19 191-209 278-296 (333)
62 PRK09823 putative inner membra 22.7 5.8E+02 0.013 23.2 8.9 93 102-207 11-104 (160)
63 COG3448 CBS-domain-containing 22.6 2.6E+02 0.0056 28.8 6.6 60 82-144 59-119 (382)
64 COG5547 Small integral membran 22.4 2E+02 0.0043 22.1 4.4 24 100-123 4-27 (62)
65 PF13295 DUF4077: Domain of un 22.3 5.4E+02 0.012 22.6 8.3 31 186-218 115-145 (175)
66 COG5438 Predicted multitransme 22.2 3.1E+02 0.0068 29.0 7.4 46 79-124 176-225 (385)
67 PF01865 PhoU_div: Protein of 22.1 6.7E+02 0.014 23.6 17.7 66 290-359 74-140 (214)
68 PHA00736 hypothetical protein 21.9 4E+02 0.0087 21.0 6.8 22 100-121 5-26 (79)
69 PF07907 YibE_F: YibE/F-like p 21.6 3E+02 0.0066 27.2 7.0 70 53-124 21-97 (244)
70 TIGR00153 conserved hypothetic 21.6 7.1E+02 0.015 23.7 19.1 45 287-331 74-119 (216)
71 KOG4267 Predicted membrane pro 21.4 5.5E+02 0.012 22.3 7.6 62 107-172 32-95 (110)
72 PF10779 XhlA: Haemolysin XhlA 21.3 1.8E+02 0.0038 22.9 4.3 20 104-123 50-69 (71)
73 PF10498 IFT57: Intra-flagella 21.2 9.7E+02 0.021 25.2 14.0 100 257-381 246-345 (359)
74 TIGR03480 HpnN hopanoid biosyn 20.8 5.8E+02 0.013 29.9 10.3 20 191-210 835-854 (862)
75 TIGR00327 secE_euk_arch protei 20.8 4.1E+02 0.0088 20.6 6.2 45 28-72 5-50 (61)
76 COG4035 Predicted membrane pro 20.6 98 0.0021 26.0 2.7 39 75-123 62-104 (108)
77 PF12805 FUSC-like: FUSC-like 20.5 8.5E+02 0.018 24.2 26.8 21 301-321 213-233 (284)
78 PF10225 DUF2215: Uncharacteri 20.3 8.5E+02 0.018 24.1 13.1 81 145-229 55-139 (249)
79 TIGR00796 livcs branched-chain 20.0 1E+03 0.023 25.0 17.1 79 38-124 201-281 (378)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=5.5e-82 Score=654.27 Aligned_cols=381 Identities=60% Similarity=0.965 Sum_probs=362.9
Q ss_pred HhhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 41 KKLGQDDPRRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGA 120 (490)
Q Consensus 41 ~~~~~~d~~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~ 120 (490)
|+++++||||+.|++|+|+|++++++++|..+.|.+++.+++||++||++|++||+|+|+.||++|++||++||++|+++
T Consensus 1 w~~g~~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~ 80 (406)
T PF11744_consen 1 WKFGKDDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGV 80 (406)
T ss_pred CcccccCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHH--HHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHH
Q 037603 121 QHTAILCGDKGEPIVLGILVFILA--STFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGA 198 (490)
Q Consensus 121 ~~l~~~~g~~~~~ill~i~vfl~~--~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ 198 (490)
.+++..+|++.+++++++++|+++ ++|.+++|.+|+||+||+.+|++||++|++++|++++++.+|..|+..|++|++
T Consensus 81 ~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~ 160 (406)
T PF11744_consen 81 SWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVA 160 (406)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHH
Confidence 999988888778899988899888 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCcccchHHHHHHHHHHHhhhhhHHHHhhhh
Q 037603 199 ACTVISIFVCPVWAGEDLHKLIASNLENLACYLEGFGDEYFQVNKSEEGGDVTKKDKSFLQKYKSVLNSKTQEDNLANFA 278 (490)
Q Consensus 199 ia~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~esl~~~a 278 (490)
++++||+++||.|++++||+.++++++++++++++|+++|+...+++....+...+++.+++|+++++|++++|+|+++|
T Consensus 161 i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A 240 (406)
T PF11744_consen 161 ICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFA 240 (406)
T ss_pred HHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhh
Confidence 99999999999999999999999999999999999999999877665222223356788999999999999999999999
Q ss_pred hcCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 037603 279 RWEPGHGKFRLRHPWQQYLKIGAFARQCAYQIEALNGCIDSRIQVPQEIQSKIQESCENISSESSKALKALASSIKKMTD 358 (490)
Q Consensus 279 ~~Ep~~g~~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~q~p~~l~~~l~~~~~~l~~~~~~~L~~La~si~~~~~ 358 (490)
+|||+||+|+++|||++|.|+++++|+|++.++|||+|+++++|+|+++|+.++++|.+++.|+.++|++|+.++++|++
T Consensus 241 ~WEP~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL~gcl~seiq~p~~~r~~~~~~~~~~~~e~~kvLrel~~~ik~m~~ 320 (406)
T PF11744_consen 241 RWEPPHGRFRFRHPWKQYLKIGALLRHCAYCVEALHGCLNSEIQAPPELRQKFQEECTRVSSESAKVLRELSNSIKTMTK 320 (406)
T ss_pred hhcccccCCccCCcHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcc-----------------------cCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037603 359 PSPANSHIEASKKAVKDLENALKEAS-----------------------LNTLDFQAIVPAATVASTLIEIVKCIEKISG 415 (490)
Q Consensus 359 ~~~~~~~~~~~~~a~~~L~~~l~~~~-----------------------~~~~~~~~~~~~~~~~sllie~~~~le~l~~ 415 (490)
+++.+.++.++++|+|+|+..+++.+ +++.++.+++|++||+|+|||++.|+|+|+|
T Consensus 321 ~~~~~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~lat~aSlLie~v~r~~~iv~ 400 (406)
T PF11744_consen 321 SSSIDDHVANLKEAAEDLQSKLDSQSYLLLNSESPERSFLRPQSSKEAEWTSYELLEALPLATFASLLIEFVARLENIVE 400 (406)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhCCccccCCchhhhhhccccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99877889999999999999998776 6678999999999999999999999999999
Q ss_pred HHHHhh
Q 037603 416 SVTDLS 421 (490)
Q Consensus 416 sv~eL~ 421 (490)
+|+||+
T Consensus 401 ~v~eLa 406 (406)
T PF11744_consen 401 AVEELA 406 (406)
T ss_pred HHHhhC
Confidence 999996
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=1.3e-55 Score=473.04 Aligned_cols=410 Identities=45% Similarity=0.761 Sum_probs=365.2
Q ss_pred hhhhchhHhHH---HHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccCh
Q 037603 20 GWLRVFPCSLK---AKVTNITKSIKKLGQDDPRRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTV 96 (490)
Q Consensus 20 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~ 96 (490)
.|++....|.+ .|+.++.+++|+++.+|||++.|++|+|+|++|++.++|..+.+.+++.++.||++|+++|+++++
T Consensus 59 ~~~~~~~~k~~~~~~kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~sv 138 (625)
T KOG4711|consen 59 LFSKYKTDKELELSAKVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSV 138 (625)
T ss_pred eccccccccccchHHHHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEecc
Confidence 33444444555 899999999999999999999999999999999999999999888888899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH--HHHHhhhhccccchhHHHHHHHHHHHHHHh
Q 037603 97 GATLSKGLNRGFATLIAGALGVGAQHTAILCGDKGEPIVLGILVFILA--STFTRFFPRMKARYDYGILIFILTFSMVAV 174 (490)
Q Consensus 97 G~t~~kg~~Ri~GTllGa~la~~~~~l~~~~g~~~~~ill~i~vfl~~--~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l 174 (490)
|+|+.||++|.+||+.+|.+|+.+.++...+|...+++.++.++|+.+ ++|++|+|.+|+ |+|+.++|++|++++.+
T Consensus 139 gatl~kglnr~v~tL~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~-y~y~~lIf~ltf~l~~v 217 (625)
T KOG4711|consen 139 GATLSKGLNRAVGTLSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKA-YEYGFLIFILTFCLVEV 217 (625)
T ss_pred chHHHHhHHHHHHHhhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhc-cchhhhHHHHHhhhhee
Confidence 999999999999999999999999999988886557788888899887 999999999997 99999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH-------HHhhhhhcC--CCc
Q 037603 175 SGYRVDELLVLAHQRLSTILVGGAACTVISIFVCPVWAGEDLHKLIASNLENLACYLEG-------FGDEYFQVN--KSE 245 (490)
Q Consensus 175 ~~~~~~~~~~~A~~R~~~i~IGi~ia~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~~-------~l~~~~~~~--~~~ 245 (490)
.+++.+.+++.|..|+.+|.+|..+|++|+.|+||.|++++||+..+.+++.++.++++ +..+|+... +..
T Consensus 218 s~~r~~~~~~~a~~Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~~~~y~~~~~i~~~ 297 (625)
T KOG4711|consen 218 SGYRSDYFLELALQRLLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCFNGEYFCVEKIEIL 297 (625)
T ss_pred cccchhHHHHHHHHHHHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhhcchheeehhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999995 555555432 111
Q ss_pred --CCCCcccchHHHHHHHHHHHhhhhhHHHHhhhhhcCCCCC-CcccCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 037603 246 --EGGDVTKKDKSFLQKYKSVLNSKTQEDNLANFARWEPGHG-KFRLRHPWQQYLKIGAFARQCAYQIEALNGCIDSRIQ 322 (490)
Q Consensus 246 --~~~~~~~~~~~~~~~~~~~l~s~~~~esl~~~a~~Ep~~g-~~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~q 322 (490)
.+..++..+++.+++|+++++++..+|++.++|.|||+|| .++++|||++|.+++.++|+|++++++||+|+.+++|
T Consensus 298 s~~~~~~s~~~~~~~~Gy~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~~i~alh~~l~s~~q 377 (625)
T KOG4711|consen 298 SIPTFYKSAAWYPLYNGYWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAFIIMALHGCLLSEIQ 377 (625)
T ss_pred chhhhhhhcchhhhhcchhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHHHHHHHHHHhccccccccc
Confidence 1111222367789999999999999999999999999999 6779999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-CcccHHHHHHHHHHHHHHHhcc--------c--------
Q 037603 323 VPQEIQSKIQESCENISSESSKALKALASSIKKMTDPSPA-NSHIEASKKAVKDLENALKEAS--------L-------- 385 (490)
Q Consensus 323 ~p~~l~~~l~~~~~~l~~~~~~~L~~La~si~~~~~~~~~-~~~~~~~~~a~~~L~~~l~~~~--------~-------- 385 (490)
.|.+++..++++|.+++.+..++++.++.+++.|+++++. +.+....+.|.++|+..+.+.+ |
T Consensus 378 ap~~~~~~~~~~l~rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~~A~~~L~~~ids~p~l~v~~~~~~~~~~~~~ 457 (625)
T KOG4711|consen 378 APRDLRNKFRLTLRRVAIEISKVLRPFRAKVELMYKLSSALDILLQYVTVADRELQRNIDSNPTLLVNSESWISSNLQAA 457 (625)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhccCcchHhhcccchhhhhHHHH
Confidence 9999999999999999999999999999999999999983 7778888889999887654321 0
Q ss_pred --------------------------------------------------------------------------------
Q 037603 386 -------------------------------------------------------------------------------- 385 (490)
Q Consensus 386 -------------------------------------------------------------------------------- 385 (490)
T Consensus 458 ~~~~~~~~~e~~~~~~~~~ek~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~~~s~~ 537 (625)
T KOG4711|consen 458 RELLNEVNHEPNLKGTFPVEKYNELIHKLLSLGILLEVGTRFGNWDDAKLKETLRRLRKDSVSSVNAVSYISSNSIRSKN 537 (625)
T ss_pred HHHhhhhccchhhcccccchhHHHHHHHhhcchhhhhccccccchhhHHHHHhhcccccchhhhhhhhhhhhhcccccCC
Confidence
Q ss_pred --------------CCchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhhcCCCCccC
Q 037603 386 --------------NTLDFQAIVPAATVAS-TLIEIVKCIEKISGSVTDLSNLAHFKEVE 430 (490)
Q Consensus 386 --------------~~~~~~~~~~~~~~~s-llie~~~~le~l~~sv~eL~~~a~F~~~~ 430 (490)
.+.+..+.+++++|+| +|++.+++++.++++++||+..|+|++.+
T Consensus 538 ~~~~~~p~~~~~~~~~~~~se~l~~a~fas~ll~~~~arl~~vv~~~~el~~~a~f~~~~ 597 (625)
T KOG4711|consen 538 PIPRVVPILSRATSKSYESSEALNLATFASNLLLEFVARLDNVVSAVEELSDKANFKEYD 597 (625)
T ss_pred CCccccccccccccccccCchhcCcccccchHHHHHHHHHhhhhhhhhhhhhhhhhcccc
Confidence 0012346788999999 99999999999999999999999999844
No 3
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.95 E-value=5.9e-26 Score=252.23 Aligned_cols=238 Identities=22% Similarity=0.281 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 037603 50 RVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQHTAILCGD 129 (490)
Q Consensus 50 ~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~~~~g~ 129 (490)
+++|++|+++|++++. +++.++++ ++||||++||++|+||+.|+++.||++|++||++|+++|+++..++ ++
T Consensus 1 ~~~~alr~~lA~~lAl----~ia~~l~l-~~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~---~~ 72 (650)
T PF04632_consen 1 RLRFALRTALAAMLAL----YIAFWLQL-PHPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALF---PQ 72 (650)
T ss_pred CHHHHHHHHHHHHHHH----HHHHHhCC-CCcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cc
Confidence 4789999999999965 44556788 7999999999999999999999999999999999999999998764 34
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037603 130 KGEPIVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGYR-VDELLVLAHQRLSTILVGGAACTVISIFVC 208 (490)
Q Consensus 130 ~~~~ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~-~~~~~~~A~~R~~~i~IGi~ia~lVs~li~ 208 (490)
.+..+++++++|+..+.|...+ ....++|+++++++|.++|.+++.. +++.++++++|+.+|+||++|+.+|+.++|
T Consensus 73 ~p~l~~~~lal~i~~c~~~~~~--~~~~~~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l~~ 150 (650)
T PF04632_consen 73 SPLLFLLALALWIGLCLYLSLL--DRNFRSYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSMLFF 150 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555666776553343321 2235789999999999999988754 567899999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCcccchHHHHHHHHHHHhhhhhHHHHhhhhhcCCCCCCcc
Q 037603 209 PVWAGEDLHKLIASNLENLACYLEGFGDEYFQVNKSEEGGDVTKKDKSFLQKYKSVLNSKTQEDNLANFARWEPGHGKFR 288 (490)
Q Consensus 209 P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~esl~~~a~~Ep~~g~~~ 288 (490)
|.+.++.+++.+.+.++..+++++..++. .++. .. ..++...+..+.+.+..++.+|....+.
T Consensus 151 P~~~~~~l~~~l~~~l~~~~~~~~~~l~~----~~~~--------~~----~~~~l~~~~~~l~~~~~~~~~e~~~~~~- 213 (650)
T PF04632_consen 151 PQRARRQLRRRLAQRLADLARWLAALLDG----DPDP--------AA----ERRRLARDIAALESLLSHARYESPRLRR- 213 (650)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhCC----Cccc--------ch----HHHHHHHHHHHHHHHHhhccccCchhHH-
Confidence 99999999999999999999988876532 1111 11 1233344445678888999999854332
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037603 289 LRHPWQQYLKIGAFARQCAYQIEALNGCI 317 (490)
Q Consensus 289 ~~~p~~~y~~i~~~lr~~~~~l~aL~~~~ 317 (490)
....++.+...+..+...+..++...
T Consensus 214 ---~~~~~~~l~~~~~~l~~~~~~l~~~~ 239 (650)
T PF04632_consen 214 ---RRRRLRALQARLLRLLALLRSLARRL 239 (650)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12233334333444444444444433
No 4
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.95 E-value=7.2e-25 Score=242.81 Aligned_cols=309 Identities=18% Similarity=0.173 Sum_probs=209.3
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHH
Q 037603 33 VTNITKSIKKLGQDDPRRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLI 112 (490)
Q Consensus 33 ~~~~~~~~~~~~~~d~~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTll 112 (490)
.++++..+++....|+..++||+|++++++++.+++ .++++ +||||+++|+++|++|+.|+|..|+.+|++||++
T Consensus 363 ~~~~~~~l~~~l~~~S~~fRhAlRlalal~~a~~i~----~~l~l-~~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTll 437 (704)
T TIGR01666 363 LKNIWARIFSHFTFESPLFRHAVRLSIVLFLGYAII----QFFGF-NLGYWILLTTLFVCQPNYSATKVRLRQRIIGTLL 437 (704)
T ss_pred hhHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHH----HHhCC-CCCchHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 456677788888899999999999999999965443 34677 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q 037603 113 AGALGVGAQHTAILCGDKGEPIVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDELLVLAHQRLST 192 (490)
Q Consensus 113 Ga~la~~~~~l~~~~g~~~~~ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~ 192 (490)
|+++|+++.++.. .. . ..+.+.+.. +..|+.+ . ..+|+..++.+|..++++..... +.++++..|+++
T Consensus 438 G~~lg~~ll~l~p---~~-~-~~l~liv~~-~~l~~~~---~--~~~Y~~a~~fiT~~vll~~~l~g-~~~~~~~~Rl~d 505 (704)
T TIGR01666 438 GVVIGSPLLYFNP---SL-E-LQLVLVVLT-GVLFFAF---R--SNNYSFATFFITLLVLLCFNVLG-EGAAVLLPRLLD 505 (704)
T ss_pred HHHHHHHHHHHhc---cH-H-HHHHHHHHH-HHHHHHH---H--HHhHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHH
Confidence 9999999988742 11 1 111111111 1112111 1 24455555667766665443322 457889999999
Q ss_pred HHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCcccchHHHHHHHHHHHhhhhhHH
Q 037603 193 ILVGGAACTVISIFVCPVWAGEDLHKLIASNLENLACYLEGFGDEYFQVNKSEEGGDVTKKDKSFLQKYKSVLNSKTQED 272 (490)
Q Consensus 193 i~IGi~ia~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~e 272 (490)
|+||+++|+++++++||.|.++++++.+++.++..++|++.++++|..++.++ .......|+.-++.++.+
T Consensus 506 TlIG~~iAl~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~~~---------~~yr~aRR~a~~~~a~l~ 576 (704)
T TIGR01666 506 TLIGCAIAWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFGKSDD---------LKYRIARRNAHNYDAALS 576 (704)
T ss_pred HHHHHHHHHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCcch---------hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876544321 111112233334455666
Q ss_pred HHhhhhhcCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 273 NLANFARWEPGHGKFRLRHPWQQYLKIGAFARQCAYQIEALNGCIDSRIQVPQEIQSKIQESCENISSESSKALKALASS 352 (490)
Q Consensus 273 sl~~~a~~Ep~~g~~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~q~p~~l~~~l~~~~~~l~~~~~~~L~~La~s 352 (490)
+....+.-||.+.+ ..|+.--++....+.....+.+|..+- + +.+. ..+...+++...++.+.|..+...
T Consensus 577 ~~~~~m~~EP~~~~----~~~~~~~~ll~~~~~llsyisaLg~~r-~--~~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 646 (704)
T TIGR01666 577 TTVSNMNNEPVKYK----AYLQKGFRLLKLNHSLLSYISALGAHR-D--RLKN---LQQTAQFLDGFYPVAKKLIYTLEH 646 (704)
T ss_pred HHHHHHHhCCCcch----hhHHHHHHHHHHHHHHHHHHHHHHhCH-h--hCCC---hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77777889997543 344443445555556666666665431 1 2211 123345556666777777777766
Q ss_pred hhccCCCCCCCcccHHHHHHHHHHHHHHHh
Q 037603 353 IKKMTDPSPANSHIEASKKAVKDLENALKE 382 (490)
Q Consensus 353 i~~~~~~~~~~~~~~~~~~a~~~L~~~l~~ 382 (490)
.... ++. . ..+.+++.++|.+.+..
T Consensus 647 ~~~~--~~~--~-~~~~~~~~~~~~~~l~~ 671 (704)
T TIGR01666 647 IEEI--PEA--I-FNQQQESIETLELRKQE 671 (704)
T ss_pred cccc--ccc--h-hhhHHHHHHHHHHHHhh
Confidence 6531 111 1 12455666777777753
No 5
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.95 E-value=2.5e-25 Score=247.19 Aligned_cols=285 Identities=18% Similarity=0.206 Sum_probs=197.0
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHH
Q 037603 33 VTNITKSIKKLGQDDPRRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLI 112 (490)
Q Consensus 33 ~~~~~~~~~~~~~~d~~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTll 112 (490)
+++++..++.....++..++||+|+++|++++..++. ++++ ++|||+++|+++|++|+.|+|..|+.+|++||++
T Consensus 365 ~~~~~~~l~~~l~~~S~~fRhAlR~ala~~~a~~i~~----~l~l-~~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~ 439 (701)
T TIGR01667 365 LKDILPRLKSHLTPESPLFRHAVRLSLVVMLGYAILM----GTAL-HLGYWILLTTLFVCQPNYGATRLRLVQRIIGTVV 439 (701)
T ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH----HhCC-CcchHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 3466777888888899999999999999999754443 4667 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q 037603 113 AGALGVGAQHTAILCGDKGEPIVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDELLVLAHQRLST 192 (490)
Q Consensus 113 Ga~la~~~~~l~~~~g~~~~~ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~ 192 (490)
|+++|+++.++.. .+ . ..+.+.+++. +.++.+ . +.+|+..++++|..+++.......+.++++..|+++
T Consensus 440 G~llg~~l~~l~p---~~-~-~~l~l~v~~~-~~~~~~---~--~~~Y~~a~~fiT~~vll~~~l~~~~~~~~a~~Rl~D 508 (701)
T TIGR01667 440 GLVIGVALHFLIP---SL-E-GQLTLMVITG-VAFFAF---R--SKNYGWATVFITLLVLLCFNLLGLDGEQYILPRLID 508 (701)
T ss_pred HHHHHHHHHHHcC---cH-H-HHHHHHHHHH-HHHHHH---H--HhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 9999999887642 21 1 1222222221 111111 1 245676677788665554433333557899999999
Q ss_pred HHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCcccchHHHHHHHHHHHhhhhhHH
Q 037603 193 ILVGGAACTVISIFVCPVWAGEDLHKLIASNLENLACYLEGFGDEYFQVNKSEEGGDVTKKDKSFLQKYKSVLNSKTQED 272 (490)
Q Consensus 193 i~IGi~ia~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~e 272 (490)
|+||+++|++++.++||.|.++++++.+.+.++..++|++.++++|..++.++ .......++.-++.++.+
T Consensus 509 TliG~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~~~~~~---------~~yr~aRr~a~~a~a~l~ 579 (701)
T TIGR01667 509 TLIGCLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQGKPDD---------LAYRIARRNAHNTDAALS 579 (701)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch---------hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876543221 011111223334455667
Q ss_pred HHhhhhhcCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 273 NLANFARWEPGHGKFRLRHPWQQYLKIGAFARQCAYQIEALNGCIDSRIQVPQEIQSKIQESCENISSESSKALKALASS 352 (490)
Q Consensus 273 sl~~~a~~Ep~~g~~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~q~p~~l~~~l~~~~~~l~~~~~~~L~~La~s 352 (490)
+....+..||++.+ ..++..-.+....+.+...+.+|..+-. .. ..+++.. .+.+.+..+.+.|..+...
T Consensus 580 ~~~~~m~~EP~~~~----~~~~~~~~ll~~~~~ll~~isal~a~r~-~~-~~~~~~~----~~~~~~~~~~~~l~~~~~~ 649 (701)
T TIGR01667 580 TTLSNMMQEPAFNS----HYLEDGFRLLTLSHTLLSYISALGAHRE-RL-LNPELAA----ELLQACEIVAKAIQRCQAR 649 (701)
T ss_pred HHHHHHHhCCCCch----hhHHHHHHHHHHHHHHHHHHHHHHhccc-cc-CChhHHH----HHHHHHHHHHHHHHHHHHh
Confidence 77788899997543 3333333444555666666667664311 11 1233433 3445555556667666666
No 6
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.94 E-value=4.6e-25 Score=241.47 Aligned_cols=218 Identities=15% Similarity=0.107 Sum_probs=174.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhc---------ccChhHHHHHHHHHHHHHHHHHH
Q 037603 45 QDDPRRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVF---------EFTVGATLSKGLNRGFATLIAGA 115 (490)
Q Consensus 45 ~~d~~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~---------~pt~G~t~~kg~~Ri~GTllGa~ 115 (490)
.++.++++|++|+++|++++. +.+.++++ ++||||++||++|+ ||..|+++.|+++|++||++|++
T Consensus 3 ~p~~~~~~falk~~lA~~LAL----~ia~~l~L-~~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~ 77 (652)
T PRK10631 3 SIANQRLRFAVKLAFAIVLAL----FVGFHFQL-ETPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCI 77 (652)
T ss_pred CCcHHHHHHHHHHHHHHHHHH----HHHHHCCC-CCccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHH
Confidence 457789999999999999965 44556788 79999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHH
Q 037603 116 LGVGAQHTAILCGDKGEPIVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGYR-VDELLVLAHQRLSTIL 194 (490)
Q Consensus 116 la~~~~~l~~~~g~~~~~ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~-~~~~~~~A~~R~~~i~ 194 (490)
.|+++..++ ++.+..+++++++|+..++|... ..+.+++|+++++++|.++|+++... ++.++++|+.|+.+|+
T Consensus 78 ~~l~l~~~f---~~~p~l~~l~l~lWig~c~~~s~--l~r~~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R~~Ei~ 152 (652)
T PRK10631 78 AALVIIIAT---IRAPLLMILLCCIWAGFCTWISS--LVRVENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIV 152 (652)
T ss_pred HHHHHHHHh---cCChHHHHHHHHHHHHHHHHHHH--hccchhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 999999764 44445565667777755444332 12336889999999999999988765 5578999999999999
Q ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCcccchHHHHHHHHHHHhhhhhHHHH
Q 037603 195 VGGAACTVISIFVCPVWAGEDLHKLIASNLENLACYLEGFGDEYFQVNKSEEGGDVTKKDKSFLQKYKSVLNSKTQEDNL 274 (490)
Q Consensus 195 IGi~ia~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~esl 274 (490)
||++|+.+|+.+++|.+.++.+++.+.+.+.+...+++.++.. .+.+ ..-....+++.+....|.+
T Consensus 153 iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l~~----~~~~----------~~~~~~~~L~~di~~le~l 218 (652)
T PRK10631 153 IGIVCAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIKH----GDKE----------EVDKAWGDLVRRTTALNGM 218 (652)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhcc----Cccc----------hhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888876432 1111 0112233455556678999
Q ss_pred hhhhhcCCCCCC
Q 037603 275 ANFARWEPGHGK 286 (490)
Q Consensus 275 ~~~a~~Ep~~g~ 286 (490)
...+.||.++.+
T Consensus 219 r~~~~~e~~~~r 230 (652)
T PRK10631 219 RSNLMMESSRWQ 230 (652)
T ss_pred HHhhccCCcchh
Confidence 999999976554
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.88 E-value=1.7e-20 Score=204.63 Aligned_cols=222 Identities=18% Similarity=0.128 Sum_probs=156.7
Q ss_pred HHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHH
Q 037603 39 SIKKLGQDDPRRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGV 118 (490)
Q Consensus 39 ~~~~~~~~d~~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~ 118 (490)
..|.....|+..++||+|+.+|+.++..++. ..++ ++|||+++|+++|++|+.|.|.+|+++|++||++|+++|+
T Consensus 339 ~~~~dA~tNp~~~R~ALRt~lAa~La~~i~~----~l~w-~~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ 413 (683)
T PRK11427 339 SMVADAFTNPDYMRYALKTLLACLICYTFYS----GVDW-EGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILAL 413 (683)
T ss_pred hhhHHhccCHHHHHHHHHHHHHHHHHHHHHH----HcCC-CccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556788899999999999999754433 4677 7999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCchH-HHH-HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHH
Q 037603 119 GAQHTAILCGDKGEP-IVL-GILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGY-RVDELLVLAHQRLSTILV 195 (490)
Q Consensus 119 ~~~~l~~~~g~~~~~-ill-~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~-~~~~~~~~A~~R~~~i~I 195 (490)
++..+.. .+..+. .++ .++.+++.+.+.. ....+++|+++.+++|+.++.+... .+......+.+|+.+|++
T Consensus 414 ll~v~l~--P~l~~~~~Llllllp~~llg~wv~---~~~~R~sYa~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLL 488 (683)
T PRK11427 414 LFTLLVM--PWLDNIVELLFVLAPIFLLGAWIA---TSSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILI 488 (683)
T ss_pred HHHHHhc--cccccHHHHHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHH
Confidence 9986543 222222 121 1111111111221 1123678999999999888876432 232234567789999999
Q ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCcccchHHHHHHHHHHHhhhhhHHHHh
Q 037603 196 GGAACTVISIFVCPVWAGEDLHKLIASNLENLACYLEGFGDEYFQVNKSEEGGDVTKKDKSFLQKYKSVLNSKTQEDNLA 275 (490)
Q Consensus 196 Gi~ia~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~esl~ 275 (490)
|++++.+++.++||.|.++.+++.+.+.++.++++++...+ ... ...+...+..+....+.++.|.+.
T Consensus 489 Gi~iA~la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~~~~-----~~~-------~~~~~~~~~R~~l~~a~~~le~~~ 556 (683)
T PRK11427 489 GTVVSAVIYTFVWPESEARTLPQKLAGALGMLSKVLRIPRQ-----QEV-------TALRTYLQIRIGLHAAFNACEEMC 556 (683)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhcccc-----cch-------hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887765211 000 001110111233334455677888
Q ss_pred hhhhcCC
Q 037603 276 NFARWEP 282 (490)
Q Consensus 276 ~~a~~Ep 282 (490)
....+||
T Consensus 557 ~rl~~Ep 563 (683)
T PRK11427 557 QRVALER 563 (683)
T ss_pred HHhhcCc
Confidence 8899999
No 8
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.74 E-value=2.3e-15 Score=153.32 Aligned_cols=161 Identities=20% Similarity=0.287 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 037603 52 THSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQHTAILCGDKG 131 (490)
Q Consensus 52 ~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~~~~g~~~ 131 (490)
...+|+|+|++++.+++. ++++ +.|..|+|+++++++||...|+.++++|++|+++|+++|.++..++ |+
T Consensus 11 ~RtlKt~ia~~La~~ia~----~l~~-~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~---g~-- 80 (332)
T COG4129 11 ARTLKTGLAAGLALLIAH----LLGL-PQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLF---GQ-- 80 (332)
T ss_pred HHHHHHHHHHHHHHHHHH----HhCC-CchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHc---Cc--
Confidence 567999999999765443 5677 7899999999999999999999999999999999999999999874 64
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 037603 132 EPIVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGAACTVISIFVCPVW 211 (490)
Q Consensus 132 ~~ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia~lVs~li~P~~ 211 (490)
+|+.+|+.+.+++....++ +..-|.....+...-++... ..+.++... |+.++++|+++|++||.+++|+.
T Consensus 81 ~~~~~~v~~~i~i~~~~~~------~~~~g~~~~~~~~~~ii~~~-~~~~~~~~~--r~l~~~vG~~~a~lvn~~~~~~~ 151 (332)
T COG4129 81 NPIAFGVVLLIIIPLLVLL------KLENGVVPITVGVLHILVAA-MIPLFLIFN--RFLLVFVGVGVAFLVNLVMPPPD 151 (332)
T ss_pred cHHHHHHHHHHHHHHHHHH------hcccchhHHHHHHHHHHHHc-ccchhHHHH--HHHHHHHHHHHHHHHhhhcCCch
Confidence 5666665555543222222 23333333333322222222 233444444 99999999999999999999887
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 037603 212 AGEDLHKLIASNLENLACYLEG 233 (490)
Q Consensus 212 a~~~L~~~l~~~l~~la~~l~~ 233 (490)
.+++..-.+.....+..+..
T Consensus 152 --~~~~~~~~kv~~~~~~il~~ 171 (332)
T COG4129 152 --YELKLYRAKVEAILASILWE 171 (332)
T ss_pred --HHHHHHHHHHHHHHHHHHHH
Confidence 44444443444444444433
No 9
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.73 E-value=1.1e-15 Score=171.10 Aligned_cols=184 Identities=21% Similarity=0.254 Sum_probs=140.1
Q ss_pred hhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccC-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 42 KLGQDDPRRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFT-VGATLSKGLNRGFATLIAGALGVGA 120 (490)
Q Consensus 42 ~~~~~d~~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt-~G~t~~kg~~Ri~GTllGa~la~~~ 120 (490)
...++++..++||+|+++++.++..++ .+.++ ++|||+++|+++|++|+ .|++..++.+|+.||++|+++|.++
T Consensus 346 ~~~~~~~~alr~a~R~ala~~~~~~~~----~~~~w-~~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~ 420 (674)
T COG1289 346 AHHRLNSPALRHALRTALALLLGYAFW----LALGW-PHGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLV 420 (674)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHHH----HHhcC-CccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778889999999999999976443 34678 79999999999999999 9999999999999999999999999
Q ss_pred HHHHhhcCCCch-HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Q 037603 121 QHTAILCGDKGE-PIVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGAA 199 (490)
Q Consensus 121 ~~l~~~~g~~~~-~ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~i 199 (490)
.++.. +.... +.++.+..++++ .+++. .+|.|+.+ ++|+.+.+..+..+.+...+...|+.++++|+++
T Consensus 421 l~~~~--p~~~~~l~~l~~~~~l~~-~~~~~-----~~~~~a~~--~i~l~v~~~~~l~~~~~~~~~~~r~~d~~iG~lI 490 (674)
T COG1289 421 LLLLL--PLIPGLLLLLLLAALLFA-AGIRL-----AKYRLATL--GITLLVLFLVGLLGSNGPDYDLPRFLDTLLGSLI 490 (674)
T ss_pred HHHhc--ccchhHHHHHHHHHHHHH-HHHHh-----cchhHHHH--HHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHH
Confidence 98753 22212 222222222211 11211 14666654 3444444444434457788999999999999999
Q ss_pred HHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037603 200 CTVISIFVCPVWAGEDLHKLIASNLENLACYLEGFGDEYFQ 240 (490)
Q Consensus 200 a~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~ 240 (490)
|.++.+++||.|....+++...+.++...+++....+.+..
T Consensus 491 a~~~a~~v~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~ 531 (674)
T COG1289 491 ALALAFLVWPLWRPRRLRRALRRALRALRRDLASALSREPT 531 (674)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999988765543
No 10
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.71 E-value=1.5e-14 Score=158.33 Aligned_cols=172 Identities=13% Similarity=0.029 Sum_probs=131.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 45 QDDPRRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQHTA 124 (490)
Q Consensus 45 ~~d~~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~ 124 (490)
...|.|.-..+|+.++.+++..+++ .+++ ++++|+..++++|+||..|.|..|++.|++||++|+++++++.-..
T Consensus 24 ~~~P~r~~~~~r~~~a~~L~l~i~~----~l~~-P~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~ 98 (683)
T PRK11427 24 ERRPGRVPQTLQLWVGCLLVILISM----TFEI-PFLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWS 98 (683)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHH----HcCC-CHHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666677999999998654443 4667 7999999999999999999999999999999999999999998764
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH--HhcCCCcchHHHHHHHHHHH-----HHHHH
Q 037603 125 ILCGDKGEPIVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMV--AVSGYRVDELLVLAHQRLST-----ILVGG 197 (490)
Q Consensus 125 ~~~g~~~~~ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV--~l~~~~~~~~~~~A~~R~~~-----i~IGi 197 (490)
. +. +...++.+++|++.+.|+ . ...+.+|.++++++|. ++ .+.+..+ ..-+..|..+ |.+|+
T Consensus 99 v--~~-P~l~~l~ialw~~~~lyl---~-r~~rl~yvf~lag~ta-ii~~~f~~v~~---~~E~~~R~~e~~w~~i~~gi 167 (683)
T PRK11427 99 Y--GY-PLIRLIIAGPILMGCMFL---M-RTHRLGLVFFAVAIVA-IYGQTFPAMLD---YPEVVVRLTLWCIVVGLYPT 167 (683)
T ss_pred c--cc-hHHHHHHHHHHHHHHHHH---h-hccchhHHHHHHHHHH-HHHhhcccccc---hHHHHHHHHHHHHHHHHHHH
Confidence 2 32 233444556666543333 2 2235799999999994 55 3333333 1223889888 99999
Q ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Q 037603 198 AACTVISIFVCPVWAGEDLHKLIASNLENLACYLE 232 (490)
Q Consensus 198 ~ia~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~ 232 (490)
+|+.+||.++||.+.++.++..+.+.+++...++.
T Consensus 168 ~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l~ 202 (683)
T PRK11427 168 LLMTLIGVLWFPSRAINQMHQALNDRLDDAISHLT 202 (683)
T ss_pred HHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888887766544
No 11
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.60 E-value=3.3e-14 Score=128.73 Aligned_cols=136 Identities=23% Similarity=0.343 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 037603 53 HSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQHTAILCGDKGE 132 (490)
Q Consensus 53 ~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~~~~g~~~~ 132 (490)
..+|+++|++++..++ .+++. +++++|++++++++|||..+|++.+++|+.|+++|+++|+++..+. |+ +
T Consensus 6 r~iKtaiA~~la~~ia----~~l~~-~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~---g~--~ 75 (141)
T PF06081_consen 6 RTIKTAIAAFLAILIA----QLLGL-QYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLIL---GY--N 75 (141)
T ss_pred HHHHHHHHHHHHHHHH----HHHCC-CchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Cc--c
Confidence 4689999999965444 34566 6899999999999999999999999999999999999999998774 54 5
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037603 133 PIVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGAACTVISIFV 207 (490)
Q Consensus 133 ~ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia~lVs~li 207 (490)
|+.+++.+++......++ +.+.+...+.+++..++.. .+++ +..+..|+.++++|+.+|++||+++
T Consensus 76 ~~~~~l~v~i~i~~~~~l------~~~~~~~~a~v~~~~i~~~--~~~~-~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 76 PLSIGLAVIITIPICNWL------KLGEGIIVAAVTFVHILLS--GSDS-FSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHHHHHHHHHHHh------CCCCeehHHHHHHHHHHHc--CCcc-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 666666555543222221 2333444444554444433 3334 3449999999999999999999864
No 12
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.59 E-value=1.6e-12 Score=145.69 Aligned_cols=166 Identities=21% Similarity=0.192 Sum_probs=128.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037603 47 DPRRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQHTAIL 126 (490)
Q Consensus 47 d~~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~~~ 126 (490)
....++|++|+.+|+.++.+++| +.+. ++++|+++|+.+|++|..|+.+.|++.|++||++|..++.++..+.
T Consensus 7 ~~~~~~~~lr~~~a~~la~~~~~----~~~l-~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~-- 79 (674)
T COG1289 7 TNADWRYALRTFLAACLALALAF----LLGL-PQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALL-- 79 (674)
T ss_pred CchhHHHHHHHHHHHHHHHHHHH----HcCC-CCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHH--
Confidence 44578999999999999765555 4666 7999999999999999999999999999999999999999998664
Q ss_pred cCCCchHHHHHHHHHHHHH-HHHhhhhccccchhHHHHHHHHHHHHHHhcC--CC-cchHHHHHHHHHHHHHHHHHHHHH
Q 037603 127 CGDKGEPIVLGILVFILAS-TFTRFFPRMKARYDYGILIFILTFSMVAVSG--YR-VDELLVLAHQRLSTILVGGAACTV 202 (490)
Q Consensus 127 ~g~~~~~ill~i~vfl~~~-~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~--~~-~~~~~~~A~~R~~~i~IGi~ia~l 202 (490)
.+ .+.++++++++|++.+ .+.. .......|++.++++|+.++. +. +. +...+..+++|+.++++|++|+-.
T Consensus 80 ~~-~p~~f~~~~~~~~~l~~~~~~---~~~~~~~~a~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~ 154 (674)
T COG1289 80 AQ-EPWLFLLLLTLWLGLCTAIGS---LYRTIASYAFVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILCAPV 154 (674)
T ss_pred cc-CcHHHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23 3455656666666542 2222 223357899999999998887 32 21 234799999999999999999999
Q ss_pred HHhhcccccchHHHHHHHHHHH
Q 037603 203 ISIFVCPVWAGEDLHKLIASNL 224 (490)
Q Consensus 203 Vs~li~P~~a~~~L~~~l~~~l 224 (490)
+....+|.+....|.+.+....
T Consensus 155 ~~~~~~~~~~~~~L~~~l~~~~ 176 (674)
T COG1289 155 VPLLESPSRLYQALANYLEAKS 176 (674)
T ss_pred chHhhhHHHHHHHHHHHHHHHH
Confidence 9988888777666555444333
No 13
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.58 E-value=2.7e-14 Score=125.97 Aligned_cols=118 Identities=27% Similarity=0.385 Sum_probs=88.1
Q ss_pred hcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhhhc
Q 037603 74 YDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQHTAILCGDKGEPIVLGILVFILASTFTRFFPR 153 (490)
Q Consensus 74 ~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~~~~g~~~~~ill~i~vfl~~~~~~~~~~~ 153 (490)
+.+. +|++|+++|++++++|+.+++..++.+|++||++|+++|++++.+.. + + +.+.+.+++.. ++.++..
T Consensus 8 ~~~~-~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~---~--~-~~~~~~~~~~~--~~~~~~~ 78 (128)
T PF13515_consen 8 WLGL-PHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFP---G--N-YVLILIVFLLM--FLIFYFL 78 (128)
T ss_pred HHcC-CchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C--H-HHHHHHHHHHH--HHHHHHH
Confidence 4566 79999999999999999999999999999999999999999997742 2 2 22222222222 1111111
Q ss_pred cccchhHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHHH
Q 037603 154 MKARYDYGILIFILTFSMVAVSGYR---VDELLVLAHQRLSTILVGGAACTVI 203 (490)
Q Consensus 154 ~k~~~~y~~~i~~lT~~lV~l~~~~---~~~~~~~A~~R~~~i~IGi~ia~lV 203 (490)
.+.|....+.+|+.++++.++. +.+.++.+..|+.++++|+++++++
T Consensus 79 ---~~~y~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 79 ---SKNYAIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred ---hccHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 2456666777888777776642 4567899999999999999999874
No 14
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=99.40 E-value=7.8e-11 Score=115.19 Aligned_cols=212 Identities=14% Similarity=0.172 Sum_probs=137.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCcccchHHHHHHHHHHHhhhhhHHHHhhhhhcCCCCCC
Q 037603 207 VCPVWAGEDLHKLIASNLENLACYLEGFGDEYFQVNKSEEGGDVTKKDKSFLQKYKSVLNSKTQEDNLANFARWEPGHGK 286 (490)
Q Consensus 207 i~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~esl~~~a~~Ep~~g~ 286 (490)
..|.+++..+|+.+++.+..+++++..+++.+....+.. ..+.....+.+.+.+.++.......+.+..+++|||+.++
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G 79 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNP-DGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKG 79 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCC
Confidence 479999999999999999999999999887665532111 1111112345566667777777889999999999998433
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 037603 287 FRLRHPWQQYLKIGAFARQCAYQIEALNGCIDSRIQVPQEIQSKI----QESCENISSESSKALKALASSIKKMTDPSPA 362 (490)
Q Consensus 287 ~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~q~p~~l~~~l----~~~~~~l~~~~~~~L~~La~si~~~~~~~~~ 362 (490)
+||.+.|.++...+.+....+..|..... ... |.+.++.+ ...-..+.+++-.+|..+++++++..+.|+
T Consensus 80 ---~FP~~~Y~~l~~~~~~il~~l~~l~~~~~-~l~-~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~g~pLP~- 153 (229)
T PF10334_consen 80 ---RFPKETYQRLLELCQNILDLLSLLSYVST-RLE-PSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRTGQPLPP- 153 (229)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc-hhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCc-
Confidence 68999999997766665555544433322 222 54444443 444456677788999999999999999886
Q ss_pred CcccHHHHHHHHHHHHHHHhcc----------cCCchhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHhhhcCC
Q 037603 363 NSHIEASKKAVKDLENALKEAS----------LNTLDFQAIVPAATVAS---TLIEIVKCIEKISGSVTDLSNLAH 425 (490)
Q Consensus 363 ~~~~~~~~~a~~~L~~~l~~~~----------~~~~~~~~~~~~~~~~s---llie~~~~le~l~~sv~eL~~~a~ 425 (490)
.+..|-..+..+-+........ .-+.+++....+..|.+ .-..+.+++|+|+.-|++|.|+.+
T Consensus 154 ~lp~pl~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~y~~~~v~~~~~~~i~~~lD~lv~~vK~lvGE~~ 229 (229)
T PF10334_consen 154 YLPAPLVRRHFDHLRKLWQLDRSSDDEVELPDILSLEHLRDEDYRRFCVAVSAASSILERLDELVIVVKELVGEQY 229 (229)
T ss_pred cCCcchHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3211212222222222211000 01334444444444444 444999999999999999999863
No 15
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=99.26 E-value=2.9e-08 Score=106.64 Aligned_cols=267 Identities=17% Similarity=0.174 Sum_probs=166.1
Q ss_pred HHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHHHHHH
Q 037603 39 SIKKLGQDDPRRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVF-EFTVGATLSKGLNRGFATLIAGALG 117 (490)
Q Consensus 39 ~~~~~~~~d~~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~-~pt~G~t~~kg~~Ri~GTllGa~la 117 (490)
..|..-+.|.+.++--+|.+++..++.+++...+....+|+.+|.++|..+++. .-.+|..+...+.=++|+.+|.+.+
T Consensus 4 p~W~~~~ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~ 83 (459)
T PF10337_consen 4 PAWLLDHLDRRSLKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWG 83 (459)
T ss_pred chhhhcCCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 346656678899999999999999998888776655556789999988776653 3367888888888899999999888
Q ss_pred HHHHHHHhhcC-C------------------CchH-------------------HHHHHHHHHHHHHHHhhhhcccc---
Q 037603 118 VGAQHTAILCG-D------------------KGEP-------------------IVLGILVFILASTFTRFFPRMKA--- 156 (490)
Q Consensus 118 ~~~~~l~~~~g-~------------------~~~~-------------------ill~i~vfl~~~~~~~~~~~~k~--- 156 (490)
++..+++...- + ..++ .+.+ +|++.+.|+-. .++.
T Consensus 84 ~l~~~~a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~a--v~l~~~i~~~~--~lRa~~p 159 (459)
T PF10337_consen 84 LLAMYIAVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFA--VFLFVFIYFHG--WLRAKNP 159 (459)
T ss_pred HHHHHHHHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHH--HHHHHHHHHHH--HHHHhCc
Confidence 88887764331 1 0010 2222 33322222211 1222
Q ss_pred chhHHHHHHHHHHHHHHhcCCC-cc-hHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Q 037603 157 RYDYGILIFILTFSMVAVSGYR-VD-ELLVLAHQRLSTILVGGAACTVISIFVCPVWAGEDLHKLIASNLENLACYLEGF 234 (490)
Q Consensus 157 ~~~y~~~i~~lT~~lV~l~~~~-~~-~~~~~A~~R~~~i~IGi~ia~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~~~ 234 (490)
++..+..++.+...+.+.++.. +. ....++..=+.-.++|+++++++|++|||.+.+..+.+.+.+.+..+...+...
T Consensus 160 ~~~~~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~ 239 (459)
T PF10337_consen 160 KLNFPVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQ 239 (459)
T ss_pred chHHHHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 2333332333333333333322 22 345555555667799999999999999999999999999988888888888775
Q ss_pred HhhhhhcCCCcCCCCcccchHHHHHHHHHHHhhhhhHHHHhhhhhcCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHh
Q 037603 235 GDEYFQVNKSEEGGDVTKKDKSFLQKYKSVLNSKTQEDNLANFARWEPGHGKFRLRHPWQQYLKIGAFARQCAYQIEALN 314 (490)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~esl~~~a~~Ep~~g~~~~~~p~~~y~~i~~~lr~~~~~l~aL~ 314 (490)
..|+...+++.... ....+++.+.-.+........+.-..+++.|-..|++ +-++|..+...+|++...+..|.
T Consensus 240 -~~~l~~~~~~~~~~-~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl----~~~Dl~~i~~~lr~l~~~~~gL~ 313 (459)
T PF10337_consen 240 -RNFLQSSEPSDEFD-AKSLKKLKATKAKLRALYAKLQAALRFLKLEISYGRL----SPDDLKPIFSLLRSLMIPLSGLS 313 (459)
T ss_pred -HHHHhCCCCCCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34565443321110 0001222222222233334566777889999988864 45667777777776665554444
Q ss_pred h
Q 037603 315 G 315 (490)
Q Consensus 315 ~ 315 (490)
.
T Consensus 314 ~ 314 (459)
T PF10337_consen 314 S 314 (459)
T ss_pred H
Confidence 3
No 16
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.16 E-value=7.8e-08 Score=107.36 Aligned_cols=176 Identities=18% Similarity=0.140 Sum_probs=129.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037603 48 PRRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVF--EFTVGATLSKGLNRGFATLIAGALGVGAQHTAI 125 (490)
Q Consensus 48 ~~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~--~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~~ 125 (490)
+..+++++|+++++.++++++.. .++ +.+.-+++++.++. -.+.+....+...++.|+++|+++|+++.++..
T Consensus 337 ~~A~~~alra~la~~~~~l~Wi~----t~W-~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vl 411 (650)
T PF04632_consen 337 PLALRNALRAFLAILIAGLFWIA----TGW-PSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVL 411 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----cCC-ChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678899999999988766543 466 67777888777765 788899999999999999999999999887653
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 037603 126 LCGDKGEPIVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGAACTVISI 205 (490)
Q Consensus 126 ~~g~~~~~ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia~lVs~ 205 (490)
..-+....+++.++.+++...+. ..++++.+.++.+.++|.+.+..++...-.+.....+.+.+++|++++.++..
T Consensus 412 P~~~~f~~L~l~l~~~l~~~~~~----~~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~~ 487 (650)
T PF04632_consen 412 PHLDGFPLLALVLAPFLFLGGLL----MARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAALVFR 487 (650)
T ss_pred hccCcHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122222222332222222 23457888777777777777766666555578899999999999999999999
Q ss_pred hcccccchHHHHHHHHHHHHHHHHHHH
Q 037603 206 FVCPVWAGEDLHKLIASNLENLACYLE 232 (490)
Q Consensus 206 li~P~~a~~~L~~~l~~~l~~la~~l~ 232 (490)
+++|.......++.+....++++...+
T Consensus 488 li~p~~~~~~~rrl~~~~~~~l~~~~~ 514 (650)
T PF04632_consen 488 LIRPFSPEWRRRRLLRALRRDLARLAR 514 (650)
T ss_pred HHCCCChhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999888888887776543
No 17
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=98.82 E-value=3.3e-06 Score=85.25 Aligned_cols=176 Identities=18% Similarity=0.154 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHhhhh-hcCCCcCCCCcccchHHHHHHHHH
Q 037603 185 LAHQRLSTILVGGAACTVISIFVCPVWAGEDLHKLIASNLENLACYLEGFGDEYF-QVNKSEEGGDVTKKDKSFLQKYKS 263 (490)
Q Consensus 185 ~A~~R~~~i~IGi~ia~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 263 (490)
-++.+...+++|.++.+++++++||.+..+-.++.+++.+..+++|++.-.+-|- ..+++.+. ...+..+.-..
T Consensus 70 ~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~~p~~~~~~~~-----~~~~l~~~q~~ 144 (284)
T PF12805_consen 70 EALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKARFFDPDQHDDDEQ-----LRIELAQQQIK 144 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhH-----HHHHHHHHHHH
Confidence 6788889999999999999999999999999999999999999999987433220 11111100 01111111111
Q ss_pred HHhhh-hhHHHHhhhhhcCCCCCCcccCCCH-HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHH-----HHHHHHH
Q 037603 264 VLNSK-TQEDNLANFARWEPGHGKFRLRHPW-QQYLKIGAFARQCAYQIEALNGCIDSRIQVPQEIQS-----KIQESCE 336 (490)
Q Consensus 264 ~l~s~-~~~esl~~~a~~Ep~~g~~~~~~p~-~~y~~i~~~lr~~~~~l~aL~~~~~~~~q~p~~l~~-----~l~~~~~ 336 (490)
+.+.. ...+.+... ..+.++.. .+. ..+..+--......+.+.+-+. ..+++++ .+...+.
T Consensus 145 v~~~~~~~R~~l~~~--r~~~~~~~---~~~~~~ll~~~~~a~Dl~E~~~as~~-------~y~~l~~~f~~~~~l~~~~ 212 (284)
T PF12805_consen 145 VNEALEQARELLLRR--RRSGRGKP---STYGRRLLLLFFEAVDLFERALASHY-------DYEELREQFKHSDVLFRFQ 212 (284)
T ss_pred HHHHHHHHHHHHHHh--hcccCCCC---CcHHHHHHHHHHHHHHHHHHHHhccc-------cHHHHHHHhcCChHHHHHH
Confidence 11111 122233221 11222211 111 1111111111111221211111 1122222 2345677
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCcccHHHHHHHHHHHHHHH
Q 037603 337 NISSESSKALKALASSIKKMTDPSPANSHIEASKKAVKDLENALK 381 (490)
Q Consensus 337 ~l~~~~~~~L~~La~si~~~~~~~~~~~~~~~~~~a~~~L~~~l~ 381 (490)
++..+.++.++.++.++...++..+ .++.+.+.++++..+.
T Consensus 213 ~~l~~~a~~l~~ia~ai~~~~~~~~----~~~l~~~l~~l~~~l~ 253 (284)
T PF12805_consen 213 RLLEQLAQALRQIAQAILRGRPYHH----RNRLKRALEALEESLE 253 (284)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC----chHHHHHHHHHHHHHH
Confidence 7888888999999999998776653 3567778888887764
No 18
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=98.71 E-value=9.5e-05 Score=83.24 Aligned_cols=172 Identities=16% Similarity=0.131 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 037603 49 RRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQHTAILCG 128 (490)
Q Consensus 49 ~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~~~~g 128 (490)
..+.+++|+.+|+..+.++.++ ++...-++=+.+.++...-.+..+.+..=+.+++-|++...++.+...+.. +
T Consensus 6 ~~~~~~lri~ia~~~~~~~~~~----~~~~~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~--~ 79 (704)
T TIGR01666 6 AKVIYTIPIFIALNGAAVGIWF----FDISSQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLF--G 79 (704)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----hCchhHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 4688999999999887654443 222134444566666666677888888888899999988888888877643 3
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037603 129 DKGEPIVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGAACTVISIFVC 208 (490)
Q Consensus 129 ~~~~~ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia~lVs~li~ 208 (490)
.+ .++++++++..+++++. ..+..||.- ++..|.. ++++...........+...+.+++|.++..+++++.|
T Consensus 80 ~p-~lf~~~l~~~tf~~~ml---ga~G~Rya~---Iaf~tLl-iaiytmlg~~~~~~w~~~pllll~GalwY~llsl~~~ 151 (704)
T TIGR01666 80 KP-WLFAVGLTVSTFGFIML---GAVGQRYAT---IAFGSLL-VALYTMLGYIEVNVWFIQPVMLLCGTLWYSVVTLIVH 151 (704)
T ss_pred Cc-HHHHHHHHHHHHHHHHH---HHhhhhHHH---HHHHHHH-HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 23333222222111111 223334432 2222211 1111111111111234477889999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Q 037603 209 PVWAGEDLHKLIASNLENLACYLEGF 234 (490)
Q Consensus 209 P~~a~~~L~~~l~~~l~~la~~l~~~ 234 (490)
+.+..+-+++.+++.+..+++|++.-
T Consensus 152 ~l~p~rp~q~~LA~~y~~La~yL~ak 177 (704)
T TIGR01666 152 LFFPNRPVQENLAKAFCQLAEYLETK 177 (704)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999874
No 19
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=98.69 E-value=2.2e-05 Score=88.51 Aligned_cols=292 Identities=15% Similarity=0.139 Sum_probs=155.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 037603 49 RRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQHTAILCG 128 (490)
Q Consensus 49 ~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~~~~g 128 (490)
..+.+++|+.+|+..+.++.++ ++....++=+.+.++..--.+..+.+..=+.+++-|++...++.+...+.. +
T Consensus 6 ~~~~~~l~v~ia~~~~~~~~~~----~g~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~--~ 79 (701)
T TIGR01667 6 QKLVYCLPVFIALMGAELRIWW----FGLLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLF--P 79 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----hCCccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 4678999999999877554433 232134455555665566667777877777888888777777777776542 3
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhccccchh---HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 037603 129 DKGEPIVLGILVFILASTFTRFFPRMKARYD---YGILIFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGAACTVISI 205 (490)
Q Consensus 129 ~~~~~ill~i~vfl~~~~~~~~~~~~k~~~~---y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia~lVs~ 205 (490)
.+ .++.+++++..+.++. +..+..+|. .|. +.+..++++ +..... ..+.--..+++|.++..++++
T Consensus 80 ~p-~~~~~~l~~~tf~~~m---lga~G~r~~~I~f~~-L~~aiytml---~~~~~~---~w~~~pllll~GalwY~l~sl 148 (701)
T TIGR01667 80 KP-WLFPFLLTLLTFGFIL---LGALGQRYATIAFAS-LLAAIYTML---GAGEVP---VWFIEPLLILAGTLWYGLLTL 148 (701)
T ss_pred ch-HHHHHHHHHHHHHHHH---HHHhhhhHHhHHHHH-HHHHHHHHc---Cccccc---HHHHHHHHHHHHHHHHHHHHH
Confidence 32 2233222221111111 122333453 222 111111122 111111 222255667889999999999
Q ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCcccchHHHHHHH---HHHHhhhh-hHHHHhhhhhcC
Q 037603 206 FVCPVWAGEDLHKLIASNLENLACYLEGFGDEYFQVNKSEEGGDVTKKDKSFLQKY---KSVLNSKT-QEDNLANFARWE 281 (490)
Q Consensus 206 li~P~~a~~~L~~~l~~~l~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~-~~esl~~~a~~E 281 (490)
+.+..+..+-+++.+++.+..+++|++.=- .++...+++ . .++...+.. ..+....+ ..+.+....+-
T Consensus 149 l~~~l~p~rp~q~~La~~y~~La~yL~aKa-~lf~p~~~~-~-----~~~~~~~l~~~n~~lv~~ln~~~~~ll~r~~~- 220 (701)
T TIGR01667 149 IWFLLFPNQPLQESLSRLYRELAEYLEAKS-SLFDPDQHT-D-----PEKALLPLAVRNGKVVDALNQCKQQLLMRLRG- 220 (701)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCC-C-----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 999999999999999999999999988632 233211111 0 011111100 01111111 11222221111
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhcc
Q 037603 282 PGHGKFRLRHPWQQYLKIGAFARQCAYQIEALNGCIDSRIQVPQEIQSKIQES-----CENISSESSKALKALASSIKKM 356 (490)
Q Consensus 282 p~~g~~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~q~p~~l~~~l~~~-----~~~l~~~~~~~L~~La~si~~~ 356 (490)
++ +.+. ..++ + +.......+|....+.....+++++.+..+ ++++....++.+++++.++...
T Consensus 221 ---~~---~~~~--~~rl---l-~~y~~A~di~E~a~ss~~~Y~~L~~~f~~sd~l~~~~~ll~~~a~a~~~la~ai~~~ 288 (701)
T TIGR01667 221 ---NR---TDPL--TKRM---L-RYYFEAQDIHERASSSHHQYQELQELFEHSDVLFRIQRLLQTQAQACQVLARDILLR 288 (701)
T ss_pred ---CC---CCch--HHHH---H-HHHHHHHHHHHHHHhccCCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 1110 1111 1 112223333333333333345666666555 8888888899999999999975
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHH
Q 037603 357 TDPSPANSHIEASKKAVKDLENALK 381 (490)
Q Consensus 357 ~~~~~~~~~~~~~~~a~~~L~~~l~ 381 (490)
++.. |.+..+.+.+.+...+.
T Consensus 289 ~~~~----~~~~~~~~~~~l~~sl~ 309 (701)
T TIGR01667 289 QPYY----HRLRTERALEKQIAALE 309 (701)
T ss_pred CCCC----CCchHHHHHHHHHHHHH
Confidence 5543 23456667777766654
No 20
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=97.94 E-value=0.017 Score=64.68 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 037603 51 VTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVF--EFTVGATLSKGLNRGFATLIAGALGVGAQHTAILCG 128 (490)
Q Consensus 51 ~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~--~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~~~~g 128 (490)
+.-++|+++++.+++++... .++ +.|.-+++.+.|+. --+...-...+.+=+.||++|..+|.++.++.. .
T Consensus 353 ~~~glRa~~ai~~~~~fWI~----TgW-~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~vL--P 425 (652)
T PRK10631 353 MINGWRTTLATALGTLFWLW----TGW-TSGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVII--P 425 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH----ccC-chHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 45678888888888765432 466 56665655544432 112222233345556888888888888776543 2
Q ss_pred CCc-hHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037603 129 DKG-EPIVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGAACTVISIFV 207 (490)
Q Consensus 129 ~~~-~~ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia~lVs~li 207 (490)
+.. ...++.+++... ..++...+ - +..++.+-+.+.++..+.......-.+...+.--+..++|+++|.++..++
T Consensus 426 ~i~~~f~lL~laLap~-~~~~g~~~-~--~~~~~~lg~~i~f~~~l~l~n~~~~d~~~FlN~alA~v~Gi~~A~l~f~li 501 (652)
T PRK10631 426 NTQQSMLLLCISLGVL-GFFIGIEV-Q--KRRLGSLGALASTINILVLDNPMTFHFSQFLDSALGQIVGCFLALIVILLV 501 (652)
T ss_pred cccccHHHHHHHHHHH-HHHHHHHh-c--ccHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211 222222222111 11221211 1 223443233333333333333333335667778888999999999999888
Q ss_pred ccccchHHHHHH
Q 037603 208 CPVWAGEDLHKL 219 (490)
Q Consensus 208 ~P~~a~~~L~~~ 219 (490)
.|.......++.
T Consensus 502 rp~~~~r~~rrL 513 (652)
T PRK10631 502 RDNSRDRTGRVL 513 (652)
T ss_pred CCCCHHHHHHHH
Confidence 777555444443
No 21
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=96.80 E-value=0.043 Score=49.67 Aligned_cols=138 Identities=16% Similarity=0.190 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q 037603 54 SLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQHTAILCGDKGEP 133 (490)
Q Consensus 54 alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~~~~g~~~~~ 133 (490)
++|.+.+.+++..+ ....++ +.|+.+++-.++++.+.---+.+...+=+..+++-+..+.++..+. ++ .|
T Consensus 2 ~LRia~g~~l~l~~----~~~~~~-~~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll---~~--~P 71 (140)
T PF11168_consen 2 ALRIAFGVTLGLFL----SKLFGW-PLPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLL---QD--YP 71 (140)
T ss_pred eeehhHHHHHHHHH----HHHHCC-CchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc--CC
Confidence 46778888775433 334677 7999999999888866666666677776777777777777776554 33 23
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037603 134 IVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGAACTVISIF 206 (490)
Q Consensus 134 ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia~lVs~l 206 (490)
....+.+++. .+.+++...+.+.+-.+.+..+...++...+..+ ...+.++......|++++.++.++
T Consensus 72 ~~~~l~v~l~--~~~~f~~~~~~~~~l~~~~~lv~~~ii~~f~~~~---~~~~~~l~~~l~~~~~iav~i~~l 139 (140)
T PF11168_consen 72 VVMLLLVFLL--FFWSFYRMSRGPKFLFGTMLLVGLSIIPVFASYN---TADAEDLILSLVLAILIAVLIAAL 139 (140)
T ss_pred HHHHHHHHHH--HHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444443 2333333333323333323333333333333222 235677788888888888877653
No 22
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=84.02 E-value=4.4 Score=32.32 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Q 037603 191 STILVGGAACTVISIFVCPVWAGEDLHKLIASNLENLACYLEGFG 235 (490)
Q Consensus 191 ~~i~IGi~ia~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~~~l 235 (490)
...++|.+++.++.+|+-| ..++++|+.+.+..+.+.+.+....
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP-~sG~e~R~~l~~~~~~~~~~~~~~~ 46 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP-KSGKETREKLKDKAEDLKDKAKDLY 46 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998888 6788999999888888777665543
No 23
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=79.48 E-value=33 Score=36.03 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHH-HHHHHHHHHHHHHHHHH
Q 037603 157 RYDYGILIFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGAACTVISIFVCPVWAGEDLHK-LIASNLENLACYLEGFG 235 (490)
Q Consensus 157 ~~~y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia~lVs~li~P~~a~~~L~~-~l~~~l~~la~~l~~~l 235 (490)
+...|.+++.+.|+++++...+.+..-+ .-|+. +.+++++++++ .+.+-.|-+.-.+. +..+.++.+.+-....+
T Consensus 95 q~vLg~Figtfvy~l~~l~~i~~~~~~~--~p~~~-~~~a~~l~i~~-v~~li~fI~~i~~~iqv~~ii~~i~~~~~~~i 170 (371)
T PF10011_consen 95 QVVLGTFIGTFVYSLLVLIAIRSGDYGS--VPRLS-VFIALALAILS-VVLLIYFIHHIARSIQVSNIIARIEEDARKAI 170 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccccc--CcchH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4567777788888888877655332211 44555 66666665543 33444444432221 23445666666555555
Q ss_pred hhhhh
Q 037603 236 DEYFQ 240 (490)
Q Consensus 236 ~~~~~ 240 (490)
+.+..
T Consensus 171 ~~~~~ 175 (371)
T PF10011_consen 171 DRLYP 175 (371)
T ss_pred HHhhc
Confidence 55543
No 24
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=73.78 E-value=15 Score=33.04 Aligned_cols=48 Identities=23% Similarity=0.195 Sum_probs=29.5
Q ss_pred hcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 74 YDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQH 122 (490)
Q Consensus 74 ~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~ 122 (490)
++++++.-..+.++++.++...... ..-.++|++-|++|..+|+++-.
T Consensus 92 ~l~~~~~~~~a~v~~~~i~~~~~~~-~~~~~~r~l~t~iG~~va~lVN~ 139 (141)
T PF06081_consen 92 WLKLGEGIIVAAVTFVHILLSGSDS-FSYALNRVLLTLIGIGVALLVNL 139 (141)
T ss_pred HhCCCCeehHHHHHHHHHHHcCCcc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555323344555555555433333 33399999999999999988754
No 25
>PRK11677 hypothetical protein; Provisional
Probab=63.95 E-value=40 Score=30.33 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhccccc-chHHHHHHHHHHHHHHHHH
Q 037603 191 STILVGGAACTVISIFVCPVW-AGEDLHKLIASNLENLACY 230 (490)
Q Consensus 191 ~~i~IGi~ia~lVs~li~P~~-a~~~L~~~l~~~l~~la~~ 230 (490)
+..+||++|++++..+.-|.. ....|.+.+.+.-..+..|
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~Y 48 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEY 48 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 667899999999988766652 4445555555555555444
No 26
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=63.05 E-value=1.2e+02 Score=27.40 Aligned_cols=49 Identities=14% Similarity=-0.090 Sum_probs=37.6
Q ss_pred chhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 037603 80 SGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQHTAILCGD 129 (490)
Q Consensus 80 ~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~~~~g~ 129 (490)
-+.|+..-....+--. |...+...+=+.+...|.+.|.+...+....+.
T Consensus 20 l~~W~~Figwa~yfa~-G~~~~~~~~~~~~~~~Gi~~a~~~~~~~~~~~~ 68 (144)
T PF06496_consen 20 LPGWAGFIGWASYFAA-GGGKKGLKKSLASNLSGIVWAWLAILLSGLLGG 68 (144)
T ss_pred chHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4489887766655444 888888888889999999999999888765543
No 27
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=62.90 E-value=27 Score=30.54 Aligned_cols=43 Identities=26% Similarity=0.398 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 037603 190 LSTILVGGAACTVISIFVCPVWAGEDLHKLIASNLENLACYLEG 233 (490)
Q Consensus 190 ~~~i~IGi~ia~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~~ 233 (490)
+..+++|++++.++.+++-| ..+.++|+.+.+..+.+-...+.
T Consensus 8 l~G~liGgiiGa~aaLL~AP-~sGkelR~~~K~~~~~~~~~ae~ 50 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAP-KSGKELRKKLKKSGDALFELAED 50 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHHHHHhHHHHHH
Confidence 45689999999999887776 46778886655555554444333
No 28
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=62.00 E-value=18 Score=25.27 Aligned_cols=29 Identities=28% Similarity=0.474 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037603 394 VPAATVASTLIEIVKCIEKISGSVTDLSN 422 (490)
Q Consensus 394 ~~~~~~~sllie~~~~le~l~~sv~eL~~ 422 (490)
.|.+--+-||+.+-.++|.|.+++++|..
T Consensus 8 FPi~va~yLL~R~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 8 FPIAVAIYLLVRIEKKLDELTESINELSE 36 (38)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555566899999999999999999975
No 29
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=54.20 E-value=4.2e+02 Score=30.99 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Q 037603 193 ILVGGAACTVISIFVCPVWAGEDLHKLIASNLENLACYLEGF 234 (490)
Q Consensus 193 i~IGi~ia~lVs~li~P~~a~~~L~~~l~~~l~~la~~l~~~ 234 (490)
+++|++++++.|-.+- ..-+...+.+.+.++++..|+..+
T Consensus 153 il~g~i~aF~~n~~l~--~~v~~~~~~~~~~~~Dl~~~l~~~ 192 (806)
T PF05478_consen 153 ILFGVICAFVANQQLS--TGVDDTPNTVNSTLDDLRTFLNDT 192 (806)
T ss_pred HHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHhh
Confidence 4688888888776442 223344455666677766666553
No 30
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=52.33 E-value=76 Score=28.15 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhcccccc-hHHHHHHHHHHHHHHHH
Q 037603 191 STILVGGAACTVISIFVCPVWA-GEDLHKLIASNLENLAC 229 (490)
Q Consensus 191 ~~i~IGi~ia~lVs~li~P~~a-~~~L~~~l~~~l~~la~ 229 (490)
+..+||++|++++..+..+... ...|.+.+.+.=..+.+
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~ 43 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQ 43 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 4557788888887777666532 23444444444444444
No 31
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.41 E-value=76 Score=27.53 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 100 LSKGLNRGFATLIAGALGVGAQHTA 124 (490)
Q Consensus 100 ~~kg~~Ri~GTllGa~la~~~~~l~ 124 (490)
+.-+..=+.|+++|+++|+++=.++
T Consensus 46 ~klssefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555789999999999998886
No 32
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=46.55 E-value=5.3e+02 Score=29.99 Aligned_cols=119 Identities=14% Similarity=0.122 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH-HHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcchH
Q 037603 104 LNRGFATLIAGALGVGAQHTAILCGDKGEPIVLGILVFILA-STFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDEL 182 (490)
Q Consensus 104 ~~Ri~GTllGa~la~~~~~l~~~~g~~~~~ill~i~vfl~~-~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~~ 182 (490)
+..+.|.-+|+..|+++..+....+ ...++.+++..|... +..+|= .+ ++.-+. -++++..++.++.....+.
T Consensus 189 ~a~~gG~~~Gaa~Gv~~Gli~~l~~-~~~~~~~~~~af~GLlaG~fk~---~g-K~g~~~-g~~l~~~il~~y~~~~~~~ 262 (764)
T TIGR02865 189 ISYIGGSGAGAAGGVVIGVILGLAN-NANLYQIGVFGFAGLLGGIFKE---LG-KIGTGI-GYLVGFLILAFYTQGSVAF 262 (764)
T ss_pred HHHhcCchHhHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhhcc---CC-cceeeH-HHHHHHHHHHHHhccchhH
Confidence 3445566667777777666654332 234555555444432 333332 21 222222 2344444555554222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccch---------------------HHHHHHHHHHHHHHHHHHHHHHhh
Q 037603 183 LVLAHQRLSTILVGGAACTVISIFVCPVWAG---------------------EDLHKLIASNLENLACYLEGFGDE 237 (490)
Q Consensus 183 ~~~A~~R~~~i~IGi~ia~lVs~li~P~~a~---------------------~~L~~~l~~~l~~la~~l~~~l~~ 237 (490)
. . . +.++++++++-+ ++|.+.. +++++.+...++..++.++..-+.
T Consensus 263 ~-~--~-~~e~~ia~~lFl-----l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~Ls~t 329 (764)
T TIGR02865 263 S-L--A-LYEALIATLLFL-----LIPNKIYKKLERYLDGERKQPDLQEDYMRKVREIAAEKLEEFSEVFRELSNT 329 (764)
T ss_pred H-H--H-HHHHHHHHHHHH-----HhhHHHHHHHHhhCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1 455555555433 3443211 125555666677777777665443
No 33
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=45.82 E-value=3.1e+02 Score=29.73 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=24.8
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 93 EFTVGATLSKGLNRGFATLIAGALGVGAQHTA 124 (490)
Q Consensus 93 ~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~ 124 (490)
+=+.|--..+...-+.|++.|++.|.+.=.+.
T Consensus 94 KIsFgfIpi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 94 RVTLELILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred EEehhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44667777777888899999999998876554
No 34
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=44.85 E-value=1.9e+02 Score=26.73 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccHHHHHHHHHHHHHHHhcccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037603 343 SKALKALASSIKKMTDPSPANSHIEASKKAVKDLENALKEASLNTLDFQAIVPAATVASTLIEIVKCIEKISGSVTDLSN 422 (490)
Q Consensus 343 ~~~L~~La~si~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~~~~~~~~sllie~~~~le~l~~sv~eL~~ 422 (490)
...+..+++.--..-..+.....+.++......|+..|.+.|-+-.|. -+|.-.+-||..-+++|.|+|.+...
T Consensus 68 ~es~LR~~~~~~~~~~~~~~~~~~~el~~~A~~LK~iLSrIPdei~dR------~~FL~tIK~IAsaIK~lLdAvn~v~~ 141 (154)
T PF06840_consen 68 TESLLRMAGSAPQEYRLSRREPEFQELNKRATALKRILSRIPDEISDR------RTFLETIKEIASAIKKLLDAVNEVFK 141 (154)
T ss_dssp HHHHHHHTTGGTTTTS-SS-SHHHHHHHHHHHHHHHHHHTHHHHTTSH------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHhccccccchhcCCCcHHHHHHHHHHHHHHHHHhcCcHhhcch------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334555433322222222234577777788888876555332222 56888899999999999999999985
No 35
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=43.93 E-value=1.2e+02 Score=32.62 Aligned_cols=32 Identities=9% Similarity=-0.062 Sum_probs=15.4
Q ss_pred hcccCCchhHHHHHHHHhcccChhHHHHHHHHH
Q 037603 74 YDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNR 106 (490)
Q Consensus 74 ~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~R 106 (490)
+.+| .-+|++.-.+++.+-.....+.-|+..|
T Consensus 348 hi~F-~~AYliAa~a~i~Li~~Y~~~vl~~~k~ 379 (430)
T PF06123_consen 348 HIGF-NLAYLIAALACIGLISLYLSSVLKSWKR 379 (430)
T ss_pred hhch-HHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 3444 3555555555555544444444444444
No 36
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=41.90 E-value=1.4e+02 Score=23.15 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=31.7
Q ss_pred chhHhHHHHHHHHHHHHHhhCCCCchhHHHHHHH-HHHHHHHHHHHHHh
Q 037603 24 VFPCSLKAKVTNITKSIKKLGQDDPRRVTHSLKV-GLALTLVSLLYYAR 71 (490)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~alK~-~lA~~la~l~~~~~ 71 (490)
.+.+.++..+.+..|-+....++|...+....|. ++...+...++|++
T Consensus 5 ~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~I 53 (61)
T PRK09400 5 KLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFII 53 (61)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666667778888888665554 66666666666654
No 37
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=40.36 E-value=80 Score=33.76 Aligned_cols=41 Identities=22% Similarity=0.108 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037603 164 IFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGAACTVISIF 206 (490)
Q Consensus 164 i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia~lVs~l 206 (490)
=+++|.++ +.++..+..+.-...|++.+++|+++|+.+..+
T Consensus 43 WavlTVvv--vfe~tvGatl~KG~nR~lGTl~aG~La~~~~~l 83 (406)
T PF11744_consen 43 WAVLTVVV--VFEPTVGATLSKGLNRGLGTLLAGILAFGVSWL 83 (406)
T ss_pred HHHhhhHh--hccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566444 445556677888899999999999988888664
No 38
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=39.95 E-value=63 Score=27.63 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 037603 167 LTFSMVAVSGYRVDELLVLAHQRLSTILVGGAACTVISIFVCPV 210 (490)
Q Consensus 167 lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia~lVs~li~P~ 210 (490)
+|..+++ ....++....+.+|+..+++|+++++++.. +.|.
T Consensus 19 it~~~v~--~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~-~~~~ 59 (128)
T PF13515_consen 19 ITVVSVL--SPSYGATVNRAIQRILGTLIGVVLGLLLLY-LFPG 59 (128)
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 4444443 224567799999999999999999999864 5553
No 39
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=39.51 E-value=3.7e+02 Score=28.97 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 037603 163 LIFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGAACTVISI 205 (490)
Q Consensus 163 ~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia~lVs~ 205 (490)
.++..|..++.+. +.+.-...|...+++|++++.++..
T Consensus 174 ~~a~~~l~~il~~-----~~~~~g~~~~~svLiGiv~G~v~a~ 211 (433)
T PRK11412 174 GLSVAVMCLVLAM-----IIFLPQRIARYSLLVGTIVGWILWA 211 (433)
T ss_pred HHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3555555544432 2344557899999999999999854
No 40
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=38.22 E-value=26 Score=35.93 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037603 104 LNRGFATLIAGALGVGAQHTA 124 (490)
Q Consensus 104 ~~Ri~GTllGa~la~~~~~l~ 124 (490)
+-|+.|+++||++|++.+.+.
T Consensus 344 ~IrinGallG~liG~~~~~i~ 364 (367)
T PF04286_consen 344 WIRINGALLGGLIGLLQYLIL 364 (367)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 458999999999999988664
No 41
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=36.16 E-value=8.3e+02 Score=29.25 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 037603 164 IFILTFSMVAVSG-YRVDELLVLAHQRLSTILVGGAACTVISIFVCPVWA 212 (490)
Q Consensus 164 i~~lT~~lV~l~~-~~~~~~~~~A~~R~~~i~IGi~ia~lVs~li~P~~a 212 (490)
.+.+|.+.+.++- +.++..-++...=...+++..+++++++.++.|.-+
T Consensus 437 ~stlTti~vF~Pl~f~~G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~ 486 (1021)
T PF00873_consen 437 ASTLTTIAVFLPLLFMPGIAGQFFRPLALTVIIALIASLLVALTLVPALA 486 (1021)
T ss_dssp HHHHHHHHHTCGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444444444442 224444555555556778899999999999999544
No 42
>PRK11715 inner membrane protein; Provisional
Probab=33.88 E-value=1.9e+02 Score=31.21 Aligned_cols=27 Identities=7% Similarity=-0.055 Sum_probs=12.3
Q ss_pred chhHHHHHHHHhcccChhHHHHHHHHH
Q 037603 80 SGMWAVLTVVVVFEFTVGATLSKGLNR 106 (490)
Q Consensus 80 ~~~WA~iTvviV~~pt~G~t~~kg~~R 106 (490)
-+|++.-.+++.+-.-.....-++..|
T Consensus 359 ~AYliAa~a~v~li~~Y~~~vl~~~k~ 385 (436)
T PRK11715 359 LAYLIAALACVLLIGFYLSAVLRSWKR 385 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 445444444444444444444444444
No 43
>PRK08055 chorismate mutase; Provisional
Probab=32.54 E-value=4.4e+02 Score=24.96 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 037603 294 QQYLKIGAFARQCAYQIEALNGCIDSRIQVPQEIQSKIQESCENISSESSKALKALASSIKKMTD 358 (490)
Q Consensus 294 ~~y~~i~~~lr~~~~~l~aL~~~~~~~~q~p~~l~~~l~~~~~~l~~~~~~~L~~La~si~~~~~ 358 (490)
..|..+.+..+...+.+.+--.........|+++. .+++.++++. .++|..++..+++..+
T Consensus 84 ~~F~~~I~asK~iQ~~~~a~W~~~~~~~~~~~dL~-~vRp~l~~L~---~~il~~ia~~l~~~g~ 144 (181)
T PRK08055 84 PFIVAQMDAAKAIQYRYRADWLSQPEPSWPPQDLS-DVRQRIRQLD---TQILIQIAQRLKVCGP 144 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHHH---HHHHHHHHHHHHhcCC
Confidence 35777777777777766665433333334466774 5888888888 5678888899987333
No 44
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=31.91 E-value=2.6e+02 Score=28.85 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhcC
Q 037603 102 KGLNRGFATLIAGALGVGAQ-HTAILCG 128 (490)
Q Consensus 102 kg~~Ri~GTllGa~la~~~~-~l~~~~g 128 (490)
+.+-|++=+++|+.+|+... .+....|
T Consensus 3 ~~ii~l~~~i~g~~lG~~~~p~ll~~~~ 30 (356)
T COG4956 3 KWIIILLFIIIGAVLGFAVIPELLADLG 30 (356)
T ss_pred HHHHHHHHHHHHhhhhHhhHHHHHhhcC
Confidence 45678888999999999887 4443334
No 45
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=31.31 E-value=2.1e+02 Score=31.96 Aligned_cols=18 Identities=6% Similarity=0.250 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 037603 191 STILVGGAACTVISIFVC 208 (490)
Q Consensus 191 ~~i~IGi~ia~lVs~li~ 208 (490)
.++..|+.++++++.+.+
T Consensus 393 ~~l~~GV~vGi~ls~~~~ 410 (554)
T COG0659 393 FDLVIGVVVGILLACLLF 410 (554)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455667777777765544
No 46
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=30.89 E-value=2.4e+02 Score=33.05 Aligned_cols=108 Identities=21% Similarity=0.148 Sum_probs=56.3
Q ss_pred HHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc------hHHHHHHHHHHHH-HHHHhhhhcccc
Q 037603 84 AVLTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQHTAILCGDKG------EPIVLGILVFILA-STFTRFFPRMKA 156 (490)
Q Consensus 84 A~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~~~~g~~~------~~ill~i~vfl~~-~~~~~~~~~~k~ 156 (490)
|-++=++.+..-.|+-. .+..=+.=|++|.+++-+++.++ .|++- .|++ +|.-+ +-||+-++
T Consensus 372 a~l~P~ItFG~ll~~~T-dg~~~v~E~L~stal~Giifslf--ggQPLlIlg~TgP~l----Vfe~~lf~f~~~~~---- 440 (876)
T KOG1172|consen 372 ACLLPAITFGGLLGEAT-DGLIGVVETLLSTALCGIIFSLF--GGQPLLILGVTGPLL----VFEKALFKFCKDNG---- 440 (876)
T ss_pred HhhhhHhhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHh--cCCceEEEecCccHH----HHHHHHHHHHhhCC----
Confidence 33333344433333322 33334444666666666666554 36542 2332 33322 33443321
Q ss_pred chhHH---HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 037603 157 RYDYG---ILIFILTFSMVAVSGYRVDELLVLAHQRLSTILVGGAACTVI 203 (490)
Q Consensus 157 ~~~y~---~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~i~IGi~ia~lV 203 (490)
++|- +-+++-|..+.++....+...+.--..|+.+=+.|.+|+++.
T Consensus 441 -~dyl~~r~wVglW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iF 489 (876)
T KOG1172|consen 441 -LDYLAFRAWVGLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIF 489 (876)
T ss_pred -CchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 2222 224555555555554445566777788999999999998875
No 47
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=28.49 E-value=3.5e+02 Score=26.01 Aligned_cols=57 Identities=11% Similarity=-0.055 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHH
Q 037603 50 RVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRG 107 (490)
Q Consensus 50 ~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri 107 (490)
..+||+.+.+....-.++.+..+..++. -......+.+...+....|+.-.+...+.
T Consensus 35 ~i~YGl~~il~~i~k~i~il~i~~i~g~-~~~tli~~l~f~~lR~~aGG~Ha~s~~~C 91 (210)
T PRK01100 35 KVKYGLEIILINVSKFAIVYLIALVTGL-LLQTVTVHLSFLWLRRYSFGLHATNSINC 91 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHHHhccCceecCCCcHH
Confidence 4688888877776655555665554443 23333444444556666666655554444
No 48
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=28.46 E-value=6.6e+02 Score=25.73 Aligned_cols=11 Identities=9% Similarity=0.498 Sum_probs=4.8
Q ss_pred chhHHHHHHHH
Q 037603 80 SGMWAVLTVVV 90 (490)
Q Consensus 80 ~~~WA~iTvvi 90 (490)
-+.|...-+++
T Consensus 26 lp~w~~~~~~~ 36 (325)
T PF11992_consen 26 LPLWVIVFFAA 36 (325)
T ss_pred chHHHHHHHHH
Confidence 34455444333
No 49
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=28.16 E-value=4.7e+02 Score=23.98 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccHHHHHHHHHHHHHHHhcccCCchhhhhhhHHHHHHHHHHHHHH
Q 037603 330 KIQESCENISSESSKALKALASSIKKMTDPSPANSHIEASKKAVKDLENALKEASLNTLDFQAIVPAATVASTLIEIVKC 409 (490)
Q Consensus 330 ~l~~~~~~l~~~~~~~L~~La~si~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~~~~~~~~sllie~~~~ 409 (490)
....++..+...+.+.+.....++.+..+.. .-.+.+.+....++...+...-.. ...+...-......++++...
T Consensus 113 ~~~~el~~m~~~v~~~l~~a~~al~~~d~~~--~~~i~~~e~~id~l~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~~~ 188 (212)
T TIGR02135 113 KHLEELEKMGKLALKMLKDALDAFLNKDAEL--ARQVAEMDERVDELYRQIFRELVT--YMKENPENIEAALDVLLIARY 188 (212)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHCcccHHHHHHHHHHHHH
Confidence 3456777888888888888888877522110 000112222333333332211000 000000112234455577777
Q ss_pred HHHHHHHHHHhhhcCCC
Q 037603 410 IEKISGSVTDLSNLAHF 426 (490)
Q Consensus 410 le~l~~sv~eL~~~a~F 426 (490)
+|++.|-....++...|
T Consensus 189 lERigD~~~nIae~~~~ 205 (212)
T TIGR02135 189 LERIGDHATNIAERVIY 205 (212)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776666654443
No 50
>PF14348 DUF4400: Domain of unknown function (DUF4400)
Probab=27.37 E-value=1.8e+02 Score=27.59 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=32.3
Q ss_pred HhhCCCCchhHHHHHHHHHHHHHHH-HHHHHhhhhcccCCchhHHHHHHHHh
Q 037603 41 KKLGQDDPRRVTHSLKVGLALTLVS-LLYYARPLYDSFGVSGMWAVLTVVVV 91 (490)
Q Consensus 41 ~~~~~~d~~~~~~alK~~lA~~la~-l~~~~~~~~~~l~~~~~WA~iTvviV 91 (490)
+..++.+|-...+|.|...-+.... ++++..|. .+ +|.|..+.+.++
T Consensus 138 ~~~g~eSp~~~h~a~~~~~~~~~~~~~lyL~lP~--~i--~P~~~~l~~a~l 185 (198)
T PF14348_consen 138 FGFGRESPFVYHHAKRSVIPLLILPWVLYLSLPF--SI--PPNLVPLPAALL 185 (198)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc--cc--ChHHHHHHHHHH
Confidence 5666778888888888887777666 66666663 33 788887644443
No 51
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=26.94 E-value=2.4e+02 Score=26.74 Aligned_cols=17 Identities=18% Similarity=0.213 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037603 185 LAHQRLSTILVGGAACT 201 (490)
Q Consensus 185 ~A~~R~~~i~IGi~ia~ 201 (490)
-....+..|+++++.++
T Consensus 140 ~~~~ti~yIiL~iLf~~ 156 (189)
T PF05313_consen 140 SGAYTISYIILAILFCI 156 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555444
No 52
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=25.88 E-value=67 Score=28.13 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037603 107 GFATLIAGALGVGAQHTA 124 (490)
Q Consensus 107 i~GTllGa~la~~~~~l~ 124 (490)
++|+++||++|.+...++
T Consensus 8 l~G~liGgiiGa~aaLL~ 25 (115)
T COG4980 8 LFGILIGGIIGAAAALLF 25 (115)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578999999988877664
No 53
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=25.58 E-value=7.1e+02 Score=25.23 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 037603 183 LVLAHQRLSTILVGGAACTVISIFVCP 209 (490)
Q Consensus 183 ~~~A~~R~~~i~IGi~ia~lVs~li~P 209 (490)
.+..-..+..+.+|+++|.+..-..+=
T Consensus 128 ~~~~gi~~~~t~~GVivA~~Fvs~Pf~ 154 (274)
T COG0555 128 LAPLGIKFAFTPLGVIVAMFFVSLPFV 154 (274)
T ss_pred hcccCceEeccHHHHHHHHHHHcchhH
Confidence 345566788899999999987654443
No 54
>TIGR00930 2a30 K-Cl cotransporter.
Probab=25.31 E-value=1.2e+03 Score=27.84 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=20.0
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 93 EFTVGATLSKGLNRGFATLIAGALGVGAQ 121 (490)
Q Consensus 93 ~pt~G~t~~kg~~Ri~GTllGa~la~~~~ 121 (490)
.|..|+. .--+.|.+|..+|+.+|++.+
T Consensus 139 ~p~aGG~-Y~yisralGp~~Gf~iG~~~~ 166 (953)
T TIGR00930 139 VVKGGGA-YYLISRSLGPEFGGSIGLIFA 166 (953)
T ss_pred CCCccHH-HHHHHHHhCcHHHHHHHHHHH
Confidence 3444444 445688999999999998766
No 55
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=25.30 E-value=3.9e+02 Score=25.01 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=35.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHH
Q 037603 47 DPRRVTHSLKVGLALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRG 107 (490)
Q Consensus 47 d~~~~~~alK~~lA~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri 107 (490)
+....+|++.+.+...+-.++.+..+...+. -......+.+...+++..|+--.+...|.
T Consensus 20 ~~e~~~YGle~il~~l~~~~~~l~i~~~~g~-~~~~li~~~~f~~lR~~aGG~Ha~t~~~C 79 (184)
T smart00793 20 QLLKIKYGLEVILINLIKLIIVYGVALLLGV-FLETLIVHLSFLFLRRFAGGAHAKSSLLC 79 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhhCCceecCCcHHH
Confidence 3456789999888887766666666654443 23333444444556667776655554443
No 56
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.82 E-value=1.3e+02 Score=22.39 Aligned_cols=20 Identities=15% Similarity=-0.046 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037603 104 LNRGFATLIAGALGVGAQHT 123 (490)
Q Consensus 104 ~~Ri~GTllGa~la~~~~~l 123 (490)
..|++|.++|.++|+++..+
T Consensus 8 ~~~iiG~~~G~ila~l~l~~ 27 (51)
T PF10031_consen 8 RGKIIGGLIGLILALLILTF 27 (51)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 35677777777777777655
No 57
>KOG1636 consensus DNA polymerase delta processivity factor (proliferating cell nuclear antigen) [Replication, recombination and repair]
Probab=24.16 E-value=73 Score=31.24 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhcCCCCccC
Q 037603 409 CIEKISGSVTDLSNLAHFKEVE 430 (490)
Q Consensus 409 ~le~l~~sv~eL~~~a~F~~~~ 430 (490)
-+++|+|+++||+..|+|+--+
T Consensus 11 LlKkIlealkdlV~~a~fdcse 32 (260)
T KOG1636|consen 11 LLKKILEALKDLVNDANFDCSE 32 (260)
T ss_pred HHHHHHHHHHHHHhccCccccc
Confidence 3589999999999999999744
No 58
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.05 E-value=3.5e+02 Score=21.25 Aligned_cols=49 Identities=6% Similarity=0.148 Sum_probs=35.7
Q ss_pred chhHhHHHHHHHHHHHHHhhCCCCchhH-HHHHHHHHHHHHHHHHHHHhh
Q 037603 24 VFPCSLKAKVTNITKSIKKLGQDDPRRV-THSLKVGLALTLVSLLYYARP 72 (490)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~alK~~lA~~la~l~~~~~~ 72 (490)
.+++-.++-+++..+...+--++|...+ +-+.++++...+..++.|+.-
T Consensus 6 ~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~aiGf~~mG~iGf~vK 55 (67)
T KOG3498|consen 6 QLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAIGFVIMGFIGFFVK 55 (67)
T ss_pred HhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777778887766 567888888888887777654
No 59
>COG2733 Predicted membrane protein [Function unknown]
Probab=23.96 E-value=34 Score=36.10 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037603 104 LNRGFATLIAGALGVGAQHTA 124 (490)
Q Consensus 104 ~~Ri~GTllGa~la~~~~~l~ 124 (490)
+-|+=||++||++|++++.+.
T Consensus 391 ~IRiNGtvVGG~~Gllly~I~ 411 (415)
T COG2733 391 FIRINGTVVGGIAGLLLYAIS 411 (415)
T ss_pred EEeEcCchHHHHHHHHHHHHH
Confidence 348889999999999998774
No 60
>PRK11660 putative transporter; Provisional
Probab=23.66 E-value=4.4e+02 Score=29.27 Aligned_cols=17 Identities=6% Similarity=0.169 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhc
Q 037603 191 STILVGGAACTVISIFV 207 (490)
Q Consensus 191 ~~i~IGi~ia~lVs~li 207 (490)
..+..|++++++++.+.
T Consensus 424 ~~~~~gi~~Gi~~s~~~ 440 (568)
T PRK11660 424 FDMVIAISVGIVLASLL 440 (568)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 34455666666666544
No 61
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=23.63 E-value=4.9e+02 Score=26.29 Aligned_cols=19 Identities=16% Similarity=0.217 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 037603 191 STILVGGAACTVISIFVCP 209 (490)
Q Consensus 191 ~~i~IGi~ia~lVs~li~P 209 (490)
..+.+|++++++++..+.|
T Consensus 278 ~~~~~gi~~~~l~~l~llP 296 (333)
T PF03176_consen 278 LLAAIGILIALLLSLTLLP 296 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3557888888888888877
No 62
>PRK09823 putative inner membrane protein; Provisional
Probab=22.68 E-value=5.8e+02 Score=23.15 Aligned_cols=93 Identities=19% Similarity=0.117 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcch
Q 037603 102 KGLNRGFATLIAGALGVGAQHTAILCGDKGEPIVLGILVFILASTFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDE 181 (490)
Q Consensus 102 kg~~Ri~GTllGa~la~~~~~l~~~~g~~~~~ill~i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~ 181 (490)
.++--++|+++|+.+.++...+.. |.+ .+.++-..+-+. -.|+.. .+-|+..-+.+|-+.++.- +..
T Consensus 11 ~~wFallGPlIGv~~~i~~i~f~~--~~~-~~~lll~i~~i~-plf~~l------~w~~g~~pAlLTGVa~Acl---P~k 77 (160)
T PRK09823 11 GLWFALLGPLIGVLFLVLYIFFLP--GAK-EPLLLLVIIQVL-PLFLLL------SWTTGAIPALLTGVAVACL---PEK 77 (160)
T ss_pred hhHHHHhcchhhhHHHHHHHHhcC--CCC-CchhhhHHHHhh-HHHHHH------HHHHhhHHHHHHHHHHHhC---cHH
Confidence 344557899999999888776643 433 333221111111 011111 3556776677776655543 578
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhc
Q 037603 182 LLVLAHQRLSTIL-VGGAACTVISIFV 207 (490)
Q Consensus 182 ~~~~A~~R~~~i~-IGi~ia~lVs~li 207 (490)
.++-.++|.+.-. -|++++.+.+..+
T Consensus 78 iyq~~~~R~lacgi~G~vIttLy~~~~ 104 (160)
T PRK09823 78 IYQQKIYRCLACGIGGVVITTLYCAVI 104 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8999999987653 3555666555433
No 63
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=22.58 E-value=2.6e+02 Score=28.83 Aligned_cols=60 Identities=25% Similarity=0.189 Sum_probs=37.3
Q ss_pred hHHHHHHHHhcccChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 037603 82 MWAVLTVVVVFEFTVGAT-LSKGLNRGFATLIAGALGVGAQHTAILCGDKGEPIVLGILVFILA 144 (490)
Q Consensus 82 ~WA~iTvviV~~pt~G~t-~~kg~~Ri~GTllGa~la~~~~~l~~~~g~~~~~ill~i~vfl~~ 144 (490)
.-|.|.+-.|+-+-+-+| +..=+.=+.|+++.+++|+.+.++. |++..+..+++++.+.+
T Consensus 59 lvAPmGASAVLLFavpaSPLAQPwsiiGGNlvaAlvgvtva~~v---gd~~la~~lavsLaI~~ 119 (382)
T COG3448 59 LVAPMGASAVLLFAVPASPLAQPWSIIGGNLVAALVGVTVAYFV---GDPVLASGLAVSLAIGA 119 (382)
T ss_pred hccccCcceEEEEeccCCccccchhhhcchHHHHHHhhhhhhhh---CChHHHHHHHHHHHHHH
Confidence 445555444443332222 3445666889999999999999885 67655555555555544
No 64
>COG5547 Small integral membrane protein [Function unknown]
Probab=22.44 E-value=2e+02 Score=22.10 Aligned_cols=24 Identities=13% Similarity=-0.099 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 100 LSKGLNRGFATLIAGALGVGAQHT 123 (490)
Q Consensus 100 ~~kg~~Ri~GTllGa~la~~~~~l 123 (490)
+.+.-.|++|-++|.++|+++..+
T Consensus 4 lk~fkypIIgglvglliAili~t~ 27 (62)
T COG5547 4 LKKFKYPIIGGLVGLLIAILILTF 27 (62)
T ss_pred HHHhccchHHHHHHHHHHHHHHHH
Confidence 456778999999999999998876
No 65
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=22.25 E-value=5.4e+02 Score=22.62 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchHHHHH
Q 037603 186 AHQRLSTILVGGAACTVISIFVCPVWAGEDLHK 218 (490)
Q Consensus 186 A~~R~~~i~IGi~ia~lVs~li~P~~a~~~L~~ 218 (490)
.-.|+.-|+-|+.+. ..+.++..|..+-+..
T Consensus 115 lserlvvilggvavv--ltfilcsywpeqffay 145 (175)
T PF13295_consen 115 LSERLVVILGGVAVV--LTFILCSYWPEQFFAY 145 (175)
T ss_pred HHhHHHHhcccchhe--eehhhhhcChHHHHHH
Confidence 346776666555443 3445566665554433
No 66
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=22.23 E-value=3.1e+02 Score=28.97 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=29.8
Q ss_pred CchhHHHHHHHHhcc----cChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 79 VSGMWAVLTVVVVFE----FTVGATLSKGLNRGFATLIAGALGVGAQHTA 124 (490)
Q Consensus 79 ~~~~WA~iTvviV~~----pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~ 124 (490)
.+++|..+..++++. +-+-+--.|.+.-+.||++|.++.+++.++.
T Consensus 176 ~~~i~v~ii~~viit~~tL~~v~g~n~KTl~A~~~Ti~~~~ls~il~~~~ 225 (385)
T COG5438 176 FNPILVFIILCVIITAITLFMVNGINKKTLAAFIGTILGTLLSIILAYIS 225 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489998887766543 2334444566666777777777766666554
No 67
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=22.07 E-value=6.7e+02 Score=23.59 Aligned_cols=66 Identities=15% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhh-hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 037603 290 RHPWQQYLKIGAFARQCAYQIEALNGCID-SRIQVPQEIQSKIQESCENISSESSKALKALASSIKKMTDP 359 (490)
Q Consensus 290 ~~p~~~y~~i~~~lr~~~~~l~aL~~~~~-~~~q~p~~l~~~l~~~~~~l~~~~~~~L~~La~si~~~~~~ 359 (490)
++.......+...+..++..++.....+. -....|+++. ++...+...+.+....+..+++.....
T Consensus 74 P~dRedi~~L~~~lD~I~d~i~~~a~~l~~~~~~~~~~~~----~~~~~l~~~~~~~~~~l~~~i~~l~~~ 140 (214)
T PF01865_consen 74 PFDREDILRLISSLDDIADYIEDAAKRLSLYKVEIPEELR----EEFQELAEIVVEAIEELVEAIEELKSI 140 (214)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCGH----HHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchh----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555444455544554444443332211 1223344443 455666666777777777888876653
No 68
>PHA00736 hypothetical protein
Probab=21.88 E-value=4e+02 Score=20.95 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037603 100 LSKGLNRGFATLIAGALGVGAQ 121 (490)
Q Consensus 100 ~~kg~~Ri~GTllGa~la~~~~ 121 (490)
++-+++-.+|+++|.++-+.+.
T Consensus 5 islal~tglgpvi~viiil~mm 26 (79)
T PHA00736 5 ISLALQTGLGPVIAIIIILAMM 26 (79)
T ss_pred HHHHHHcCCccHHHHHHHHHHH
Confidence 4455666677777766555444
No 69
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=21.61 E-value=3e+02 Score=27.22 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=43.0
Q ss_pred HHHHHHHHHH--HHHHHHHHhhhh-cccCCchhHHHHHHHHhcc----cChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 53 HSLKVGLALT--LVSLLYYARPLY-DSFGVSGMWAVLTVVVVFE----FTVGATLSKGLNRGFATLIAGALGVGAQHTA 124 (490)
Q Consensus 53 ~alK~~lA~~--la~l~~~~~~~~-~~l~~~~~WA~iTvviV~~----pt~G~t~~kg~~Ri~GTllGa~la~~~~~l~ 124 (490)
.++|..+++. ++.++..+.+.. .++ +|+|+.+.+.+++- .-..+-.+|.+.=++||++|.+++.++.++.
T Consensus 21 ~G~~sllsL~~n~~~i~~~~i~~~~~G~--~~~~v~~i~~~~~~~vtl~lv~G~n~kt~~A~~~tl~~~~~~~~l~~~~ 97 (244)
T PF07907_consen 21 KGLRSLLSLIFNFLIIFFVLIPLILNGY--NPILVTIIAAILITAVTLFLVNGFNKKTLAAFIGTLIGVLLAGILALLV 97 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566555443 333333344433 444 88888776655432 3456667788888888888888877776654
No 70
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=21.61 E-value=7.1e+02 Score=23.70 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=23.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHhhhhh-hccCCCHHHHHHH
Q 037603 287 FRLRHPWQQYLKIGAFARQCAYQIEALNGCID-SRIQVPQEIQSKI 331 (490)
Q Consensus 287 ~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~-~~~q~p~~l~~~l 331 (490)
|...+.......+...+..+...++.....+. -....|+++...+
T Consensus 74 fitP~dReDi~~L~~~lD~I~D~i~~~a~~l~l~~~~~~~~l~~~~ 119 (216)
T TIGR00153 74 AFLPNDRRDLLELAELLDEILDSLEHAAMLYELRKFEFPEELRDEF 119 (216)
T ss_pred ccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 33345555555565666666555555444332 2344566555444
No 71
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=21.40 E-value=5.5e+02 Score=22.35 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC-chHHHHH-HHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Q 037603 107 GFATLIAGALGVGAQHTAILCGDK-GEPIVLG-ILVFILASTFTRFFPRMKARYDYGILIFILTFSMV 172 (490)
Q Consensus 107 i~GTllGa~la~~~~~l~~~~g~~-~~~ill~-i~vfl~~~~~~~~~~~~k~~~~y~~~i~~lT~~lV 172 (490)
+.|.+.|+++|++...+.. +.. ...+.++ .+.++.+....|++++-| .-.+.+++.+..++.
T Consensus 32 ~aGl~~G~l~g~~s~~l~~--~~~~~~~~~l~~~s~~L~gvmg~R~~~s~K--~mPaglva~~s~~m~ 95 (110)
T KOG4267|consen 32 AAGLLFGALAGYGSYLLSR--DKKGGSLVALGGTSAALLGVMGQRFYRSRK--IMPAGLVAGISLLMT 95 (110)
T ss_pred HHHHHHHHHHHHHHHHhhc--CCCcCchhHHHHHHHHHHHHHhhhhhccCC--ccchHHHHHHHHHHH
Confidence 4688888888888887653 112 1223333 345555566677765543 334454555554433
No 72
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.28 E-value=1.8e+02 Score=22.91 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037603 104 LNRGFATLIAGALGVGAQHT 123 (490)
Q Consensus 104 ~~Ri~GTllGa~la~~~~~l 123 (490)
..-+.||++|++++.++.++
T Consensus 50 ~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 50 TKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456788888887766654
No 73
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.25 E-value=9.7e+02 Score=25.17 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhhhHHHHhhhhhcCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHH
Q 037603 257 FLQKYKSVLNSKTQEDNLANFARWEPGHGKFRLRHPWQQYLKIGAFARQCAYQIEALNGCIDSRIQVPQEIQSKIQESCE 336 (490)
Q Consensus 257 ~~~~~~~~l~s~~~~esl~~~a~~Ep~~g~~~~~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~~~q~p~~l~~~l~~~~~ 336 (490)
+.......+....+.|.+++. ..| .....|+.....+......+....+- ......++.
T Consensus 246 l~~~i~~~lekI~sREk~iN~-qle---------~l~~eYr~~~~~ls~~~~~y~~~s~~-----------V~~~t~~L~ 304 (359)
T PF10498_consen 246 LQQDISKTLEKIESREKYINN-QLE---------PLIQEYRSAQDELSEVQEKYKQASEG-----------VSERTRELA 304 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhH---------HHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHH
Confidence 344444445555566666654 222 23344555544444433333332221 223346777
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCcccHHHHHHHHHHHHHHH
Q 037603 337 NISSESSKALKALASSIKKMTDPSPANSHIEASKKAVKDLENALK 381 (490)
Q Consensus 337 ~l~~~~~~~L~~La~si~~~~~~~~~~~~~~~~~~a~~~L~~~l~ 381 (490)
+++.+..++=.++...-..|..-.| +-.++.|...|+..++
T Consensus 305 ~IseeLe~vK~emeerg~~mtD~sP----lv~IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 305 EISEELEQVKQEMEERGSSMTDGSP----LVKIKQALTKLKQEIK 345 (359)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHHHHH
Confidence 8888888888888888777777664 5688899999998886
No 74
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=20.85 E-value=5.8e+02 Score=29.91 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 037603 191 STILVGGAACTVISIFVCPV 210 (490)
Q Consensus 191 ~~i~IGi~ia~lVs~li~P~ 210 (490)
..+.+|+++++++++++.|.
T Consensus 835 ~~~~~gi~~~l~~~l~~lPa 854 (862)
T TIGR03480 835 ILLSLGLGLTLLCTLIFLPA 854 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45577888888888877774
No 75
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=20.76 E-value=4.1e+02 Score=20.60 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHhhCCCCchhHHHHHH-HHHHHHHHHHHHHHhh
Q 037603 28 SLKAKVTNITKSIKKLGQDDPRRVTHSLK-VGLALTLVSLLYYARP 72 (490)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~d~~~~~~alK-~~lA~~la~l~~~~~~ 72 (490)
.++..+.+..|-+.+..++|...+....| +++...+..+++|+.-
T Consensus 5 ~~~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~Ik 50 (61)
T TIGR00327 5 APVEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIK 50 (61)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556555666788877755444 5677777777777643
No 76
>COG4035 Predicted membrane protein [Function unknown]
Probab=20.57 E-value=98 Score=25.99 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=26.7
Q ss_pred cccCCchhHHH----HHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037603 75 DSFGVSGMWAV----LTVVVVFEFTVGATLSKGLNRGFATLIAGALGVGAQHT 123 (490)
Q Consensus 75 ~~l~~~~~WA~----iTvviV~~pt~G~t~~kg~~Ri~GTllGa~la~~~~~l 123 (490)
..+ +.+.|.+ +..++-|.|..|. .-|++|+++|+++|..
T Consensus 62 ~~v-~~~~~~ag~flig~v~gMRPGYGR---------~Etv~Gt~LA~l~wL~ 104 (108)
T COG4035 62 RSV-PVPLYMAGCFLIGFVLGMRPGYGR---------VETVVGTFLAVLLWLY 104 (108)
T ss_pred cCC-chHHHHHHHHHHHHhhccCCCCce---------eehhHHHHHHHHHHHh
Confidence 344 5788876 3444458898886 3577788888888765
No 77
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=20.54 E-value=8.5e+02 Score=24.22 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhhhhhcc
Q 037603 301 AFARQCAYQIEALNGCIDSRI 321 (490)
Q Consensus 301 ~~lr~~~~~l~aL~~~~~~~~ 321 (490)
..++.++..++.+...+....
T Consensus 213 ~~l~~~a~~l~~ia~ai~~~~ 233 (284)
T PF12805_consen 213 RLLEQLAQALRQIAQAILRGR 233 (284)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 345666666777766665443
No 78
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=20.33 E-value=8.5e+02 Score=24.11 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=39.3
Q ss_pred HHHHhhhhccccchhHHHHHHHHHHHHHHhcCCCcchH----HHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHH
Q 037603 145 STFTRFFPRMKARYDYGILIFILTFSMVAVSGYRVDEL----LVLAHQRLSTILVGGAACTVISIFVCPVWAGEDLHKLI 220 (490)
Q Consensus 145 ~~~~~~~~~~k~~~~y~~~i~~lT~~lV~l~~~~~~~~----~~~A~~R~~~i~IGi~ia~lVs~li~P~~a~~~L~~~l 220 (490)
+...|++| ++.--|+.++++.++.+..+.. ...+. .++...=+..+++.+++.++|++-..|... ++.++.+
T Consensus 55 ~~~~k~lP--rk~~~~~~l~gg~~~~~y~l~~-~~~nl~~il~~~~~~v~~yv~~~G~vsf~vcy~~gp~~~-~rs~~~v 130 (249)
T PF10225_consen 55 FQLSKLLP--RKSMFYAVLYGGWSFGLYFLQQ-LWENLQSILEEYRIYVLGYVLVVGLVSFAVCYRYGPPVD-PRSRNFV 130 (249)
T ss_pred HHHHHHcc--CcchhHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc-HhHHHHH
Confidence 33466777 3344466666655544433322 11222 222333344455555566666665566543 4445555
Q ss_pred HHHHHHHHH
Q 037603 221 ASNLENLAC 229 (490)
Q Consensus 221 ~~~l~~la~ 229 (490)
...++.++-
T Consensus 131 ~W~Lqligl 139 (249)
T PF10225_consen 131 KWALQLIGL 139 (249)
T ss_pred HHHHHHHHH
Confidence 555555443
No 79
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=20.01 E-value=1e+03 Score=25.04 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=44.5
Q ss_pred HHHHhhCCCCc-hhHHHHHHHHH-HHHHHHHHHHHhhhhcccCCchhHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHH
Q 037603 38 KSIKKLGQDDP-RRVTHSLKVGL-ALTLVSLLYYARPLYDSFGVSGMWAVLTVVVVFEFTVGATLSKGLNRGFATLIAGA 115 (490)
Q Consensus 38 ~~~~~~~~~d~-~~~~~alK~~l-A~~la~l~~~~~~~~~~l~~~~~WA~iTvviV~~pt~G~t~~kg~~Ri~GTllGa~ 115 (490)
..++..+-.|+ +..+.+++.|+ |..+...+|.-.. |.+- .....+.-.-+-+..+....++..|+.-+.+
T Consensus 201 ~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~-~lGa-------~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~l 272 (378)
T TIGR00796 201 NAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLF-YLGA-------TSAAAAGDAVNGAQILSAYSQHLFGSLGSFL 272 (378)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-------CcHhhhcccCCcHHHHHHHHHHHcchhHHHH
Confidence 34444455555 45678899988 5555443332211 1111 1111111011467777888999999998888
Q ss_pred HHHHHHHHH
Q 037603 116 LGVGAQHTA 124 (490)
Q Consensus 116 la~~~~~l~ 124 (490)
+++++..-+
T Consensus 273 l~i~v~lAC 281 (378)
T TIGR00796 273 LGLIITLAC 281 (378)
T ss_pred HHHHHHHHH
Confidence 888877544
Done!