Query 037603
Match_columns 490
No_of_seqs 328 out of 1497
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 03:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ajm_A Programmed cell death p 37.0 1.4E+02 0.0047 27.7 8.6 52 366-423 93-144 (213)
2 2olt_A Hypothetical protein; s 27.4 3.4E+02 0.012 24.4 20.4 61 290-354 80-141 (227)
3 2wwb_B SEC61gamma, protein tra 25.7 1.4E+02 0.0046 22.6 5.4 47 25-71 7-54 (68)
4 4dx5_A Acriflavine resistance 25.1 5.6E+02 0.019 29.0 13.2 21 190-210 1004-1024(1057)
5 3mp7_B Preprotein translocase 24.8 91 0.0031 23.1 4.2 45 27-71 6-51 (61)
6 2ww9_B Protein transport prote 22.8 2.1E+02 0.0071 22.3 6.1 49 23-71 19-68 (80)
7 3ne5_A Cation efflux system pr 21.6 3.2E+02 0.011 31.0 10.2 21 190-210 1020-1040(1054)
8 1rh5_B Preprotein translocase 20.0 1.1E+02 0.0039 23.5 4.0 47 25-71 8-55 (74)
9 3fxd_A Protein ICMQ; helix bun 17.7 1.3E+02 0.0044 21.9 3.6 27 367-393 8-34 (57)
10 4dx5_A Acriflavine resistance 17.1 1.1E+03 0.038 26.5 14.1 20 191-210 472-491 (1057)
No 1
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=37.03 E-value=1.4e+02 Score=27.67 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHHHhcccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037603 366 IEASKKAVKDLENALKEASLNTLDFQAIVPAATVASTLIEIVKCIEKISGSVTDLSNL 423 (490)
Q Consensus 366 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~~~~~~~~sllie~~~~le~l~~sv~eL~~~ 423 (490)
..++......|+..|.+.|.+-.|. -+|.-.+-||..-+++|.|+|.+....
T Consensus 93 fqel~~rA~~LK~iLSrIPdEI~dR------~~FL~tIKeIAsaIKklLDAvn~v~~~ 144 (213)
T 3ajm_A 93 FQDLNEKARALKQILSKIPDEINDR------VRFLQTIKDIASAIKELLDTVNNVFKK 144 (213)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTTCH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhhcch------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466677777887776554332222 568888899999999999999998743
No 2
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=27.43 E-value=3.4e+02 Score=24.43 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhhh-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037603 290 RHPWQQYLKIGAFARQCAYQIEALNGCIDS-RIQVPQEIQSKIQESCENISSESSKALKALASSIK 354 (490)
Q Consensus 290 ~~p~~~y~~i~~~lr~~~~~l~aL~~~~~~-~~q~p~~l~~~l~~~~~~l~~~~~~~L~~La~si~ 354 (490)
+.+...+..+...+.++...++.....+.- ....|++++..+ ..+...+.+....+..++.
T Consensus 80 P~dredi~~L~~~lD~I~D~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ai~ 141 (227)
T 2olt_A 80 PVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPF----IAYLQRCIDAVGLAQQVIN 141 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666554332 345566554333 3333333344343434433
No 3
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=25.69 E-value=1.4e+02 Score=22.63 Aligned_cols=47 Identities=9% Similarity=0.193 Sum_probs=31.8
Q ss_pred hhHhHHHHHHHHHHHHHhhCCCCchhHHHHHHH-HHHHHHHHHHHHHh
Q 037603 25 FPCSLKAKVTNITKSIKKLGQDDPRRVTHSLKV-GLALTLVSLLYYAR 71 (490)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~alK~-~lA~~la~l~~~~~ 71 (490)
+.+.+++.+.+..|-+.+..++|...+....|. ++...+..+++|+.
T Consensus 7 ~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~I 54 (68)
T 2wwb_B 7 FVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFV 54 (68)
T ss_dssp SSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666667778898888666654 66667777777764
No 4
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=25.07 E-value=5.6e+02 Score=29.02 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 037603 190 LSTILVGGAACTVISIFVCPV 210 (490)
Q Consensus 190 ~~~i~IGi~ia~lVs~li~P~ 210 (490)
-..+++|+++++++++++.|.
T Consensus 1004 g~~~~~Gl~~s~~~tl~~~P~ 1024 (1057)
T 4dx5_A 1004 GTGVMGGMVTATVLAIFFVPV 1024 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999888885
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=24.82 E-value=91 Score=23.06 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=26.8
Q ss_pred HhHHHHHHHHHHHHHhhCCCCchhHHHHHHH-HHHHHHHHHHHHHh
Q 037603 27 CSLKAKVTNITKSIKKLGQDDPRRVTHSLKV-GLALTLVSLLYYAR 71 (490)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~d~~~~~~alK~-~lA~~la~l~~~~~ 71 (490)
+.+++.+.+..+-+.+.-++|...+....|. ++...+..+++|+.
T Consensus 6 e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 6 ERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLI 51 (61)
T ss_dssp --CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555556668888888666554 55666666666654
No 6
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=22.76 E-value=2.1e+02 Score=22.35 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=32.8
Q ss_pred hchhHhHHHHHHHHHHHHHhhCCCCchhHHHHHH-HHHHHHHHHHHHHHh
Q 037603 23 RVFPCSLKAKVTNITKSIKKLGQDDPRRVTHSLK-VGLALTLVSLLYYAR 71 (490)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~alK-~~lA~~la~l~~~~~ 71 (490)
..+.+.++..+.+..|-+.+.-++|...+....| +++...+..+++|+.
T Consensus 19 ~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 19 EKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAI 68 (80)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777767777889888765555 466677777777764
No 7
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=21.57 E-value=3.2e+02 Score=31.02 Aligned_cols=21 Identities=19% Similarity=0.505 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 037603 190 LSTILVGGAACTVISIFVCPV 210 (490)
Q Consensus 190 ~~~i~IGi~ia~lVs~li~P~ 210 (490)
-..+++|+++++++++++.|.
T Consensus 1020 ~~~~~~Gl~~s~~~tl~v~P~ 1040 (1054)
T 3ne5_A 1020 AAPMIGGMITAPLLSLFIIPA 1040 (1054)
T ss_dssp THHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 356788999999999999885
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=19.98 E-value=1.1e+02 Score=23.48 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=28.2
Q ss_pred hhHhHHHHHHHHHHHHHhhCCCCchhHHHHHHH-HHHHHHHHHHHHHh
Q 037603 25 FPCSLKAKVTNITKSIKKLGQDDPRRVTHSLKV-GLALTLVSLLYYAR 71 (490)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~alK~-~lA~~la~l~~~~~ 71 (490)
+.+.+++.+.+..+-+...-++|...+....|. ++...+..+++|+.
T Consensus 8 ~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 8 KIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYII 55 (74)
T ss_dssp ----CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566565566668888888665554 66666777777664
No 9
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=17.72 E-value=1.3e+02 Score=21.91 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhcccCCchhhhh
Q 037603 367 EASKKAVKDLENALKEASLNTLDFQAI 393 (490)
Q Consensus 367 ~~~~~a~~~L~~~l~~~~~~~~~~~~~ 393 (490)
++.+.-++.|++++.+.||+...++.+
T Consensus 8 eq~~aILkaLdeaIe~GPWe~SNFLRv 34 (57)
T 3fxd_A 8 EQKETILKALNDAIEKGPWDKSNFLRV 34 (57)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 455667799999999999998777654
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=17.12 E-value=1.1e+03 Score=26.48 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 037603 191 STILVGGAACTVISIFVCPV 210 (490)
Q Consensus 191 ~~i~IGi~ia~lVs~li~P~ 210 (490)
..+++|+++++++++++.|.
T Consensus 472 ~~~~~gl~~s~~~~l~~~P~ 491 (1057)
T 4dx5_A 472 ITIVSAMALSVLVALILTPA 491 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888775
Done!