Query 037603
Match_columns 490
No_of_seqs 328 out of 1497
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 03:34:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037603.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037603hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcta1 a.7.12.1 (A:9-107) Hyp 21.6 1.1E+02 0.0083 22.0 6.8 25 400-424 70-94 (99)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 13.9 1.6E+02 0.011 25.7 6.6 12 157-168 54-65 (248)
3 d1u5ta1 a.4.5.54 (A:20-164) Va 11.9 2.1E+02 0.015 22.8 6.2 41 299-339 13-53 (145)
4 d1g5za_ a.24.12.1 (A:) Outer s 8.8 1.3E+02 0.0092 24.5 3.6 22 403-424 16-37 (164)
5 d1b3qa1 a.30.2.1 (A:293-354) H 7.1 1.2E+02 0.0088 20.4 2.4 15 407-421 8-22 (62)
6 d2nwwa1 f.49.1.1 (A:12-416) Pr 7.0 6.8E+02 0.05 22.2 9.0 29 183-211 72-100 (405)
7 d1t98a2 a.47.6.1 (A:119-281) C 6.5 3E+02 0.022 21.9 4.9 29 327-355 71-99 (163)
8 d1tlha_ a.150.1.1 (A:) Anti-si 6.1 2.2E+02 0.016 20.6 3.4 29 396-428 10-43 (89)
9 d1f1ma_ a.24.12.1 (A:) Outer s 5.9 2.2E+02 0.016 23.0 3.7 22 404-425 17-38 (162)
10 d2qsba1 a.29.14.1 (A:2-86) Unc 5.6 4.4E+02 0.032 18.8 5.0 14 368-381 27-40 (85)
No 1
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.64 E-value=1.1e+02 Score=21.99 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 037603 400 ASTLIEIVKCIEKISGSVTDLSNLA 424 (490)
Q Consensus 400 ~sllie~~~~le~l~~sv~eL~~~a 424 (490)
+..++.+...+|++.|...++|+.+
T Consensus 70 ~~~~~~i~~~lERIgDha~nIae~v 94 (99)
T d1vcta1 70 VITILQIANAIEDISNAAGDLAKMV 94 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677778888888877777643
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=13.91 E-value=1.6e+02 Score=25.65 Aligned_cols=12 Identities=25% Similarity=0.138 Sum_probs=4.7
Q ss_pred chhHHHHHHHHH
Q 037603 157 RYDYGILIFILT 168 (490)
Q Consensus 157 ~~~y~~~i~~lT 168 (490)
+|-+-++++++.
T Consensus 54 kyi~PG~~~l~~ 65 (248)
T d2r6gf1 54 RYVYPGMAGMGL 65 (248)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhhhHHHHHHH
Confidence 333444344333
No 3
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.88 E-value=2.1e+02 Score=22.76 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHH
Q 037603 299 IGAFARQCAYQIEALNGCIDSRIQVPQEIQSKIQESCENIS 339 (490)
Q Consensus 299 i~~~lr~~~~~l~aL~~~~~~~~q~p~~l~~~l~~~~~~l~ 339 (490)
+...+......++.+..-..++++-.+++|..|++-|..++
T Consensus 13 l~~QL~vF~~~L~~FA~kH~~eI~~np~FR~~F~~MC~~iG 53 (145)
T d1u5ta1 13 LRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIG 53 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHhC
Confidence 44444555555666666556788888899999988887765
No 4
>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease spirochete (Borrelia burgdorferi), different strains [TaxId: 139]}
Probab=8.78 E-value=1.3e+02 Score=24.54 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC
Q 037603 403 LIEIVKCIEKISGSVTDLSNLA 424 (490)
Q Consensus 403 lie~~~~le~l~~sv~eL~~~a 424 (490)
...-|..+|.|+.|++||+..|
T Consensus 16 fv~aVKEVetLv~SIDELA~KA 37 (164)
T d1g5za_ 16 VVLAVKEVETLLASIDELATKA 37 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3455677899999999999654
No 5
>d1b3qa1 a.30.2.1 (A:293-354) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=7.09 E-value=1.2e+02 Score=20.36 Aligned_cols=15 Identities=7% Similarity=0.299 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhh
Q 037603 407 VKCIEKISGSVTDLS 421 (490)
Q Consensus 407 ~~~le~l~~sv~eL~ 421 (490)
+++||+|++-|.||+
T Consensus 8 ~~kLD~LmnlvGELv 22 (62)
T d1b3qa1 8 IEKLDNLMDLMGELV 22 (62)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888888886
No 6
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.02 E-value=6.8e+02 Score=22.24 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 037603 183 LVLAHQRLSTILVGGAACTVISIFVCPVW 211 (490)
Q Consensus 183 ~~~A~~R~~~i~IGi~ia~lVs~li~P~~ 211 (490)
.....+=+..+++++++++++..++.|..
T Consensus 72 ~~ti~~~l~tt~iA~~igl~~~~~~~pg~ 100 (405)
T d2nwwa1 72 VKIVVYYLLTSAFAVTLGIIMARLFNPGA 100 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44556666778899999999999888855
No 7
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.55 E-value=3e+02 Score=21.91 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037603 327 IQSKIQESCENISSESSKALKALASSIKK 355 (490)
Q Consensus 327 l~~~l~~~~~~l~~~~~~~L~~La~si~~ 355 (490)
+..++...-......|+++|.+-+..+|.
T Consensus 71 IA~LL~qdW~~AI~~Ce~LL~eTs~tLRE 99 (163)
T d1t98a2 71 IAQLLNKDWRAAISSCELLLSETSGTLRE 99 (163)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhhHHH
Confidence 33333333334445555555555555554
No 8
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=6.13 E-value=2.2e+02 Score=20.58 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=20.1
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHhhhcCCCCc
Q 037603 396 AATVASTLI-----EIVKCIEKISGSVTDLSNLAHFKE 428 (490)
Q Consensus 396 ~~~~~slli-----e~~~~le~l~~sv~eL~~~a~F~~ 428 (490)
.+|++|+|| |+++.=+..++=..|| +|+.
T Consensus 10 Iit~aSiLIK~~~edI~~~q~~FI~FLNE~----G~r~ 43 (89)
T d1tlha_ 10 IITVASILIKFSREDIVENRANFIAFLNEI----GVTH 43 (89)
T ss_dssp HHHHHHHHHHHTTHHHHHSHHHHHHHHHHT----TCEE
T ss_pred HHHHHHHHHHccHHHHHHhHHHHHHHHHHh----CCCc
Confidence 488999999 5555556777666665 4663
No 9
>d1f1ma_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease spirochete (Borrelia burgdorferi), different strains [TaxId: 139]}
Probab=5.92 E-value=2.2e+02 Score=22.97 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC
Q 037603 404 IEIVKCIEKISGSVTDLSNLAH 425 (490)
Q Consensus 404 ie~~~~le~l~~sv~eL~~~a~ 425 (490)
..-|..+|.|+.|++||+.--+
T Consensus 17 ~~aVKEVetLvkSIDELAKAIG 38 (162)
T d1f1ma_ 17 VLAVKEVETLLTSIDELAKAIG 38 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHh
Confidence 3456777999999999994443
No 10
>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=5.59 E-value=4.4e+02 Score=18.80 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q 037603 368 ASKKAVKDLENALK 381 (490)
Q Consensus 368 ~~~~a~~~L~~~l~ 381 (490)
+.+++++++...|.
T Consensus 27 NIRr~a~e~~~~L~ 40 (85)
T d2qsba1 27 NVRKVAQDSKAKLS 40 (85)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777777765
Done!