BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037604
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 23/220 (10%)
Query: 229 LERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLES 288
L +FP+ ++ HL+ +D + ELP + + GL+ L+++ + L LP +I +L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNR 151
Query: 289 LHHMSAFG-SAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVM 347
L +S +++LP +A ++ G GL +L +L + +
Sbjct: 152 LRELSIRACPELTELPEPLASTDASG---------------EHQGLVNLQSLRLEWTGIR 196
Query: 348 EIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLPEL---PLCLK 404
+P IA L +L L I + +L +I L +L L+L C L++ P + LK
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 405 YLHLRDCKMLQSLP---ALPLCLESLDLRDCNMLRSLPEL 441
L L+DC L +LP LE LDLR C L LP L
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 41/230 (17%)
Query: 152 TIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTR 211
TID + L + Q + L L + + +P+SI L L L + C L +
Sbjct: 110 TIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169
Query: 212 FCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVS 271
+ + G +NL+ + L+ T I LP+S NL LK L +
Sbjct: 170 LASTDASGE--HQGLVNLQ-------------SLRLEWTGIRSLPASIANLQNLKSLKIR 214
Query: 272 DCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLL 331
+ +SA G AI LP L LD C L ++P
Sbjct: 215 NSP-----------------LSALGPAIHHLPK-------LEELDLRGCTALRNYPPIFG 250
Query: 332 GLSSLVALHIRNFA-VMEIPQEIARLSSLIDLHIGG-NNFQSLPASIKQL 379
G + L L +++ + ++ +P +I RL+ L L + G N LP+ I QL
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 61/162 (37%), Gaps = 41/162 (25%)
Query: 319 RCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQ 378
R L FP LS L I + E+P + + L L + N ++LPASI
Sbjct: 89 RSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIAS 148
Query: 379 LSQLSSLELNDCKMLQSLPELPLC------------------------------------ 402
L++L L + C L LPE PL
Sbjct: 149 LNRLRELSIRACPELTELPE-PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN 207
Query: 403 LKYLHLRDCKMLQSLPA---LPLCLESLDLRDCNMLRSLPEL 441
LK L +R+ + PA LP LE LDLR C LR+ P +
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLP-KLEELDLRGCTALRNYPPI 248
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 31/145 (21%)
Query: 99 LNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNLHFVCPVTIDFSYC 158
+NL+ ++E W G ++ +P+SI N + L L P+ H +D C
Sbjct: 183 VNLQSLRLE--WTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 159 VNLIEFPQISG---KITRLYL-GCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCK 214
L +P I G + RL L CS + +P I LT LE LDL
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL--------------- 284
Query: 215 LRSLVDLCLNGCLNLERFPEILEKM 239
GC+NL R P ++ ++
Sbjct: 285 ---------RGCVNLSRLPSLIAQL 300
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 22/164 (13%)
Query: 116 CVPSSIQNFKYLSMLNFEGCKSLRSFPSNLHFVCPVTIDFSYCVNL----IEFPQISG-- 169
+P+SI + L L+ C L P L + + VNL +E+ I
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPL-ASTDASGEHQGLVNLQSLRLEWTGIRSLP 199
Query: 170 -------KITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLC 222
+ L + S + + +I L LE LDL C L+ F L L
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 223 LNGCLNLERFP------EILEKMEHLKCINLDR--TAITELPSS 258
L C NL P LEK++ C+NL R + I +LP++
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 161/374 (43%), Gaps = 64/374 (17%)
Query: 130 LNFEGCKSLRSFPSNLHFVCPVTIDFSYCVNLIEFPQISGKITRLYL---GCSAIEEVPS 186
LN G SL P +L + + C +L E P++ + L + A+ ++P
Sbjct: 78 LNNLGLSSLPELPPHLESLV------ASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 131
Query: 187 SIECL----TDLEVL-DLMYCKRLKRISTRFCKLRSLVDL------CLNGCLNLERFPEI 235
+E L LE L +L LK I L+ L DL G LE PE
Sbjct: 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE- 190
Query: 236 LEKMEHLKCINLDRTAITELP-------------SSFENLTGLKGLS-----VSDCSKLD 277
L+ + L I D ++ +LP + E L L+ L +D + L
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 250
Query: 278 KLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRC--KGLESFPRSLLGLSS 335
LPD +LE+L+ + + + +LP S L LD S GL P +L L++
Sbjct: 251 TLPDLPPSLEALNVRDNYLTDLPELPQS------LTFLDVSENIFSGLSELPPNLYYLNA 304
Query: 336 LVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQS 395
+ IR ++ ++P SL +L++ N LPA +L +L + L
Sbjct: 305 -SSNEIR--SLCDLP------PSLEELNVSNNKLIELPALPPRLERL----IASFNHLAE 351
Query: 396 LPELPLCLKYLHLRDCKMLQSLPALPLCLESLDLRDCNMLRSLPELPLCLQELDATNCNR 455
+PELP LK LH+ + L+ P +P +E DLR + L +PELP L++L N
Sbjct: 352 VPELPQNLKQLHV-EYNPLREFPDIPESVE--DLRMNSHLAEVPELPQNLKQLHVE-TNP 407
Query: 456 LQSLAEIPSCLQEL 469
L+ +IP +++L
Sbjct: 408 LREFPDIPESVEDL 421
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 130/250 (52%), Gaps = 25/250 (10%)
Query: 225 GCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIG 284
C +L PE+ + ++ L N + A+++LP E L G+S ++L+KLP+ +
Sbjct: 99 SCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYL----GVS---NNQLEKLPE-LQ 150
Query: 285 NLESLHHMSAFGSAISQLPSSVADSNVLGILDF--SRCKGLESFPRSLLGLSSLVALHIR 342
N L + +++ +LP ++ L+F + LE P L L L A++
Sbjct: 151 NSSFLKIIDVDNNSLKKLP------DLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYAD 203
Query: 343 NFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLPELPLC 402
N ++ ++P L S++ G N + LP ++ L L+++ D +L++LP+LP
Sbjct: 204 NNSLKKLPDLPLSLESIV---AGNNILEELP-ELQNLPFLTTI-YADNNLLKTLPDLPPS 258
Query: 403 LKYLHLRDCKMLQSLPALPLCLESLDLRDCNMLRSLPELPLCLQELDATNCNRLQSLAEI 462
L+ L++RD L LP LP L LD+ + N+ L ELP L L+A+ N ++SL ++
Sbjct: 259 LEALNVRD-NYLTDLPELPQSLTFLDVSE-NIFSGLSELPPNLYYLNAS-SNEIRSLCDL 315
Query: 463 PSCLQELDAS 472
P L+EL+ S
Sbjct: 316 PPSLEELNVS 325
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 139/297 (46%), Gaps = 52/297 (17%)
Query: 211 RFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENL----TGLK 266
R C R +L LN L L PE+ +E L T + ELP S ++L LK
Sbjct: 66 RDCLDRQAHELELNN-LGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK 124
Query: 267 GLS----------VSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILD 316
LS VS+ ++L+KLP+ + N L + +++ +LP ++ L+
Sbjct: 125 ALSDLPPLLEYLGVSN-NQLEKLPE-LQNSSFLKIIDVDNNSLKKLP------DLPPSLE 176
Query: 317 F--SRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPA 374
F + LE P L L L A++ N ++ ++P L S++ G N + LP
Sbjct: 177 FIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIV---AGNNILEELP- 231
Query: 375 SIKQLSQLSSLELNDCKMLQSLPELPLCLKYLHLRDCKMLQSLPALPLCLESLDLRD--- 431
++ L L+++ D +L++LP+LP L+ L++RD L LP LP L LD+ +
Sbjct: 232 ELQNLPFLTTI-YADNNLLKTLPDLPPSLEALNVRD-NYLTDLPELPQSLTFLDVSENIF 289
Query: 432 ----------------CNMLRSLPELPLCLQELDATNCNRLQSLAEIPSCLQELDAS 472
N +RSL +LP L+EL+ +N N+L L +P L+ L AS
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELPALPPRLERLIAS 345
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 414 LQSLPALPLCLESLDLRDCNMLRSLPELPLCLQELDATNCNRLQSLAEIPSCLQELDAS- 472
L SLP LP LESL + CN L LPELP L+ L N N L++L+++P L+ L S
Sbjct: 83 LSSLPELPPHLESL-VASCNSLTELPELPQSLKSLLVDN-NNLKALSDLPPLLEYLGVSN 140
Query: 473 -VLETLSKL 480
LE L +L
Sbjct: 141 NQLEKLPEL 149
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 84/196 (42%), Gaps = 47/196 (23%)
Query: 322 GLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLP-------- 373
GL S P L SLVA + E+PQ SL L + NN ++L
Sbjct: 82 GLSSLPELPPHLESLVASCNSLTELPELPQ------SLKSLLVDNNNLKALSDLPPLLEY 135
Query: 374 --ASIKQLSQLSSLELN--------DCKMLQSLPELPLCLKYL-----HLRDCKMLQSLP 418
S QL +L L+ + D L+ LP+LP L+++ L + LQ+LP
Sbjct: 136 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLP 195
Query: 419 ALPLCLESLDLRDCNMLRSLPELPLCLQELDATNCNRLQSLAEIPSCLQEL--------D 470
L + D N L+ LP+LPL L+ + A N N L+ L E LQ L D
Sbjct: 196 FL-----TAIYADNNSLKKLPDLPLSLESIVAGN-NILEELPE----LQNLPFLTTIYAD 245
Query: 471 ASVLETLSKLSPDFRV 486
++L+TL L P
Sbjct: 246 NNLLKTLPDLPPSLEA 261
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 383 SSLELNDC--KMLQSLPELPLCLKYLHLRDCKMLQSLPALPLCLESLDLRDCNMLRSLPE 440
+SLE D L +LPELP LK+L + D L LP LP LE ++ D N L LPE
Sbjct: 100 ASLEYLDACDNRLSTLPELPASLKHLDV-DNNQLTXLPELPALLEYINA-DNNQLTXLPE 157
Query: 441 LPLCLQELDATNCNRLQSLAEIPSCLQELDASV--LETL 477
LP L+ L N N+L L E+P L+ LD S LE+L
Sbjct: 158 LPTSLEVLSVRN-NQLTFLPELPESLEALDVSTNLLESL 195
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 379 LSQLSSLELNDCKMLQSLPE-LPLCLKYLHLRDCKMLQSLPALPLCLESLDLRDCNMLRS 437
++Q S L+LN L SLP+ LP + L + ++ SLP LP LE LD D N L +
Sbjct: 58 INQFSELQLNRLN-LSSLPDNLPPQITVLEITQNALI-SLPELPASLEYLDACD-NRLST 114
Query: 438 LPELPLCLQELDATNCNRLQSLAEIPSCLQELDA 471
LPELP L+ LD N N+L L E+P+ L+ ++A
Sbjct: 115 LPELPASLKHLDVDN-NQLTXLPELPALLEYINA 147
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 62/115 (53%), Gaps = 11/115 (9%)
Query: 357 SSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLPELP--LCLKYLHLRDCKML 414
S L L I GN SLP L +LS ++D + L SLP LP LC + + L
Sbjct: 121 SGLCKLWIFGNQLTSLPVLPPGLQELS---VSDNQ-LASLPALPSELCKLWAY---NNQL 173
Query: 415 QSLPALPLCLESLDLRDCNMLRSLPELPLCLQELDATNCNRLQSLAEIPSCLQEL 469
SLP LP L+ L + D N L SLP LP L +L A N NRL SL +PS L+EL
Sbjct: 174 TSLPMLPSGLQELSVSD-NQLASLPTLPSELYKLWAYN-NRLTSLPALPSGLKEL 226
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 359 LIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLPELP--LCLKYLHLRDCKMLQS 416
L L + GN SLP L +LS L LP LP LC ++ L S
Sbjct: 83 LRTLEVSGNQLTSLPVLPPGLLELSIF----SNPLTHLPALPSGLCKLWIF---GNQLTS 135
Query: 417 LPALPLCLESLDLRDCNMLRSLPELPLCLQELDATNCNRLQSLAEIPSCLQELDAS 472
LP LP L+ L + D N L SLP LP L +L A N N+L SL +PS LQEL S
Sbjct: 136 LPVLPPGLQELSVSD-NQLASLPALPSELCKLWAYN-NQLTSLPMLPSGLQELSVS 189
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 92/228 (40%), Gaps = 28/228 (12%)
Query: 167 ISGKITRLYLGCSAIEEVPS-SIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNG 225
I R++L + I VP+ S + +L +L L + F L L L L+
Sbjct: 29 IPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSD 88
Query: 226 CLNLERF-PEILEKMEHLKCINLDRTAITEL-PSSFENLTGLKGLSVSDCSKLDKLPDN- 282
L P + HL ++LDR + EL P F L L+ L + D + L LPDN
Sbjct: 89 NAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NNLQALPDNT 147
Query: 283 IGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIR 342
+L +L H+ G+ I +P +GL S R LL + + +H
Sbjct: 148 FRDLGNLTHLFLHGNRIPSVPEHAF-------------RGLHSLDRLLLHQNHVARVH-- 192
Query: 343 NFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASI-KQLSQLSSLELND 389
P L L+ L++ NN LPA + L L L LND
Sbjct: 193 -------PHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 338 ALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLP 397
AL + N + I I + L L++ GN+ LPA IK LS L L+L+ + L SLP
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLP 286
Query: 398 -ELPLC--LKYLHLRDCKMLQSLP 418
EL C LKY + D M+ +LP
Sbjct: 287 AELGSCFQLKYFYFFD-NMVTTLP 309
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 25/100 (25%)
Query: 171 ITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLE 230
+TRLYL +++ E+P+ I+ L++L VLDL + RL + L C L+
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAE-----------LGSCFQLK 296
Query: 231 RFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSV 270
F + M +T LP F NL L+ L V
Sbjct: 297 YF-YFFDNM------------VTTLPWEFGNLCNLQFLGV 323
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 238 KMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGS 297
K + L + L+ ++TELP+ +NL+ L+ L +S ++L LP +G+ L + F +
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDN 303
Query: 298 AISQLP 303
++ LP
Sbjct: 304 MVTTLP 309
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 336 LVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQS 395
L L++ ++ E+P EI LS+L L + N SLPA + QL D M+ +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTT 307
Query: 396 LP 397
LP
Sbjct: 308 LP 309
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 282 NIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHI 341
NI + L + G+++++LP+ + + + L +LD S + L S P L L +
Sbjct: 242 NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYF 300
Query: 342 RNFAVMEIPQEIARLSSLIDLHIGGN 367
+ V +P E L +L L + GN
Sbjct: 301 FDNMVTTLPWEFGNLCNLQFLGVEGN 326
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 29/167 (17%)
Query: 320 CKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQ- 378
C GL PR + L +V + P E+ + L G F + ++
Sbjct: 266 CTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELLGEEGDV-LRKAGMEFGTTTGRPRRC 324
Query: 379 -------------LSQLSSLELNDCKMLQSLPELPLCLKYLHLRDCKMLQSLPALPLCLE 425
++ SSL L +L LPE+ L + Y + D + LQS P LE
Sbjct: 325 GWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQM-DGEKLQSFPGDLDTLE 383
Query: 426 SLDLR---------DCNMLRSLPELPLCLQELDATNCNRLQSLAEIP 463
+ + D + +RS ELP + R++ LA +P
Sbjct: 384 QVQVNYEVLPGWDSDISSVRSYSELPQAARRY----VERIEELAGVP 426
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 4/152 (2%)
Query: 219 VDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDK 278
+DL NG + + LE++EHL + + ++E S F +L L L +S
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVA 436
Query: 279 LPDNIGNLESLHHMSAFGSAISQ--LPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSL 336
L SL + G++ + LP + L LD S+C+ + P + LSSL
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 337 VALHIRNFAVMEIPQEI-ARLSSLIDLHIGGN 367
L++ + + +P I RL+SL + + N
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 153 IDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRIS--T 210
+ F C + +F S K L L + + + S+ L LE LD + LK++S +
Sbjct: 359 LSFKGCCSQSDFGTTSLKY--LDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFS 415
Query: 211 RFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITE--LPSSFENLTGLKGL 268
F LR+L+ L ++ F I + L+ + + + E LP F L L L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 269 SVSDCSKLDKL-PDNIGNLESLHHMSAFGSAISQLPSSVAD 308
+S C +L++L P +L SL ++ + + +P + D
Sbjct: 476 DLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 170 KITRLYLGCSAIEEVPSSI-ECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLN 228
+ LYLG + + +P + + LT L VLDL + S F +L L +L + C
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM-CCNK 123
Query: 229 LERFPEILEKMEHLKCINLDRTAITELP-SSFENLTGL 265
L P +E++ HL + LD+ + +P +F+ L+ L
Sbjct: 124 LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 235 ILEKMEHLKCINLDRTAITELPSS-FENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMS 293
+ + + L ++L +T LPS+ F+ L LK L + C+KL +LP I L L H++
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLA 141
Query: 294 AFGSAISQLPSSVAD 308
+ + +P D
Sbjct: 142 LDQNQLKSIPHGAFD 156
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 333 LSSLVALHIRNFAVMEIPQEI-ARLSSLIDLHIGGNNFQSLPASI-KQLSQLSSLELNDC 390
L+ L L + N + +P + L+ L L++GGN +SLP+ + +L++L L LN
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-T 140
Query: 391 KMLQSLP 397
LQS+P
Sbjct: 141 NQLQSIP 147
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 27/156 (17%)
Query: 245 INLDRTAITELP-SSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLP 303
++L T + L ++F LT L L++ D ++L L + G + L + G A +QL
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNL-DYNQLQTL--SAGVFDDLTELGTLGLANNQLA 96
Query: 304 SSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEI-ARLSSLIDL 362
S LG+ D L+ L L++ + +P + RL+ L +L
Sbjct: 97 SLP-----LGVFDH---------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 363 HIGGNNFQSLPA-SIKQLSQLSSLELNDCKMLQSLP 397
+ N QS+PA + +L+ L +L L+ LQS+P
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLS-TNQLQSVP 171
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 333 LSSLVALHIRNFAVMEIPQEI-ARLSSLIDLHIGGNNFQSLPASI-KQLSQLSSLELNDC 390
L+ L L + N + +P + L+ L L++GGN +SLP+ + +L++L L LN
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-T 140
Query: 391 KMLQSLP 397
LQS+P
Sbjct: 141 NQLQSIP 147
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 27/156 (17%)
Query: 245 INLDRTAITELP-SSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLP 303
++L T + L ++F LT L L++ D ++L L + G + L + G A +QL
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNL-DYNQLQTL--SAGVFDDLTELGTLGLANNQLA 96
Query: 304 SSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEI-ARLSSLIDL 362
S LG+ D L+ L L++ + +P + RL+ L +L
Sbjct: 97 SLP-----LGVFDH---------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 363 HIGGNNFQSLPA-SIKQLSQLSSLELNDCKMLQSLP 397
+ N QS+PA + +L+ L +L L+ LQS+P
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLS-TNQLQSVP 171
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 321 KGLESFPRSLLGLSSLVALHIRNFAVMEIPQEI-ARLSSLIDLHIGGNNFQSLPASI-KQ 378
+G S P + ++ + L ++ +P + L+SL L++GGN QSLP + +
Sbjct: 17 QGRTSVPTGIPAQTTYLDLETN--SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74
Query: 379 LSQLSSLELNDCKMLQSLPELPL----CLKYLHLRDCKMLQSLP 418
L+ L+ L L+ LQSLP LK L L + LQSLP
Sbjct: 75 LTSLTYLNLS-TNQLQSLPNGVFDKLTQLKELAL-NTNQLQSLP 116
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
Query: 236 LEKMEHLKCINLDRTAITELPS-SFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSA 294
E + L+ + L I +PS +F + L L + + KL+ + + G E L ++
Sbjct: 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE--GAFEGLFNLKY 200
Query: 295 FGSAISQLPSSVADSNVLGI--LDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQE 352
+ + + ++G+ L+ S E P S GLSSL L + N V I +
Sbjct: 201 LNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260
Query: 353 -IARLSSLIDLHIGGNNFQSLP 373
L+SL++L++ NN SLP
Sbjct: 261 AFDGLASLVELNLAHNNLSSLP 282
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 233 PEILEKMEHLKCINLDRTAITELPSS-FENLTGLKGLSVSDCSKLDKLPDN-IGNLESLH 290
P + +++ L ++LD +T LP+ F+ LT L LS++D ++L +P NL SL
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLRSLT 105
Query: 291 HM 292
H+
Sbjct: 106 HI 107
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 233 PEILEKMEHLKCINLDRTAITELPSS-FENLTGLKGLSVSDCSKLDKLPDN-IGNLESLH 290
P + +++ L ++LD +T LP+ F+ LT L LS++D ++L +P NL+SL
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLT 113
Query: 291 HM 292
H+
Sbjct: 114 HI 115
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 303 PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIAR-LSSLID 361
P++ L L RC E P GL++L L++++ A+ +P + R L +L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 362 LHIGGNNFQSLPA-SIKQLSQLSSLELNDCKMLQSLPE 398
L + GN S+P + + L L L L+ ++ P
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 303 PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIAR-LSSLID 361
P++ L L RC E P GL++L L++++ A+ +P + R L +L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 362 LHIGGNNFQSLPA-SIKQLSQLSSLELNDCKMLQSLPE 398
L + GN S+P + + L L L L+ ++ P
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 353 IARLSSLIDLHIGGNNFQSLPASI-KQLSQLSSLELNDCKMLQSLPELPL----CLKYLH 407
+ L++L L + GN QSLP + +L+ L L L + LQSLP+ L YL+
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLY 139
Query: 408 LRDCKMLQSLPALPL----CLESLDLRDCNMLRSLPE 440
L LQSLP L LDL D N L+SLPE
Sbjct: 140 LYH-NQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPE 174
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 233 PEILEKMEHLKCINLDRTAITELPSS-FENLTGLKGLSVSDCSKLDKLPDN-IGNLESLH 290
P + +++ L ++LD +T LP+ F+ LT L LS++D ++L +P NL+SL
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLT 105
Query: 291 HM 292
H+
Sbjct: 106 HI 107
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 338 ALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASI-KQLSQLSSLELND 389
L + N +M IP+++ L +L +L++ N +S+P + +L+ L + L+D
Sbjct: 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 219 VDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDK 278
+DL NG + + LE++EHL + + ++E S F +L L L +S
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVA 436
Query: 279 LPDNIGNLESLHHMSAFGSAISQ--LPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSL 336
L SL + G++ + LP + L LD S+C+ + P + LSSL
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 337 VALHI 341
L++
Sbjct: 497 QVLNM 501
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 74/183 (40%), Gaps = 36/183 (19%)
Query: 227 LNLERFPEILEKMEHLKC-------INLDRTAITELPSSFENLTGLKGLSVSDCSKLDKL 279
+N++ F +M H+ C ++LD + + FEN C L +L
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN-----------CGHLTEL 350
Query: 280 PDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLS----- 334
I + L +S +Q+ S + + KG S+ +SLL L+
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410
Query: 335 -----------SLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLS 383
+ L + + + IP+++ +L +L +L++ N +S+P I +L+
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI--FDRLT 468
Query: 384 SLE 386
SL+
Sbjct: 469 SLQ 471
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 219 VDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDK 278
+DL NG + + LE++EHL + + ++E S F +L L L +S
Sbjct: 402 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVA 460
Query: 279 LPDNIGNLESLHHMSAFGSAISQ--LPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSL 336
L SL + G++ + LP + L LD S+C+ + P + LSSL
Sbjct: 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520
Query: 337 VALHI 341
L++
Sbjct: 521 QVLNM 525
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
Query: 106 VEQLWEGEKACVP-SSIQNFKYLS--MLNFEG-----CKSLRSFPSNLHFVCP 150
++ +WEG + V + ++++KY S +LN +G C S R+F SN F CP
Sbjct: 249 LDGIWEGTRDFVACNHLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCP 301
>pdb|4FF7|A Chain A, Structure Of C126s Mutant Of Saccharomyces Cerevisiae
Triosephosphate Isomerase
pdb|4FF7|B Chain B, Structure Of C126s Mutant Of Saccharomyces Cerevisiae
Triosephosphate Isomerase
Length = 248
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 140 SFPSNLHFV-CPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDL 194
S P N+ V CP Y V+L++ PQ++ YL S +S++ + D+
Sbjct: 31 SIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDV 86
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 12/84 (14%)
Query: 178 CSAIE--EVPSSIECLTDLEVLDLMYCKRLKRIS----TRFCKLRSLVDLCLNGCLNLER 231
CS ++ +VP + T++ VL+L + +L+R+ TR+ +L SL D+ N LE
Sbjct: 16 CSHLKLTQVPDDLP--TNITVLNLTH-NQLRRLPAANFTRYSQLTSL-DVGFNTISKLE- 70
Query: 232 FPEILEKMEHLKCINLDRTAITEL 255
PE+ +K+ LK +NL +++L
Sbjct: 71 -PELCQKLPMLKVLNLQHNELSQL 93
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 12/84 (14%)
Query: 178 CSAIE--EVPSSIECLTDLEVLDLMYCKRLKRIS----TRFCKLRSLVDLCLNGCLNLER 231
CS ++ +VP + T++ VL+L + +L+R+ TR+ +L SL D+ N LE
Sbjct: 21 CSHLKLTQVPDDLP--TNITVLNLTH-NQLRRLPAANFTRYSQLTSL-DVGFNTISKLE- 75
Query: 232 FPEILEKMEHLKCINLDRTAITEL 255
PE+ +K+ LK +NL +++L
Sbjct: 76 -PELCQKLPMLKVLNLQHNELSQL 98
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 12/84 (14%)
Query: 178 CSAIE--EVPSSIECLTDLEVLDLMYCKRLKRIS----TRFCKLRSLVDLCLNGCLNLER 231
CS ++ +VP + T++ VL+L + +L+R+ TR+ +L SL D+ N LE
Sbjct: 11 CSHLKLTQVPDDLP--TNITVLNLTH-NQLRRLPAANFTRYSQLTSL-DVGFNTISKLE- 65
Query: 232 FPEILEKMEHLKCINLDRTAITEL 255
PE+ +K+ LK +NL +++L
Sbjct: 66 -PELCQKLPMLKVLNLQHNELSQL 88
>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase: The
Role Of Histidine-95
pdb|3YPI|B Chain B, Electrophilic Catalysis In Triosephosphase Isomerase: The
Role Of Histidine-95
Length = 247
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 140 SFPSNLHFV-CPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDL 194
S P N+ V CP Y V+L++ PQ++ YL S +S++ + D+
Sbjct: 30 SIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDV 85
>pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9-
Angstroms Resolution
pdb|1YPI|B Chain B, Structure Of Yeast Triosephosphate Isomerase At 1.9-
Angstroms Resolution
pdb|2YPI|A Chain A, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5-
Angstroms Resolution. Implications For Catalysis
pdb|2YPI|B Chain B, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5-
Angstroms Resolution. Implications For Catalysis
pdb|7TIM|A Chain A, Structure Of The Triosephosphate Isomerase-
Phosphoglycolohydroxamate Complex: An Analogue Of The
Intermediate On The Reaction Pathway
pdb|7TIM|B Chain B, Structure Of The Triosephosphate Isomerase-
Phosphoglycolohydroxamate Complex: An Analogue Of The
Intermediate On The Reaction Pathway
Length = 247
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 140 SFPSNLHFV-CPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDL 194
S P N+ V CP Y V+L++ PQ++ YL S +S++ + D+
Sbjct: 30 SIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDV 85
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 353 IARLSSLIDLHIGGNNFQSLPASI-KQLSQLSSLELNDCKMLQSLPELPL----CLKYLH 407
+ L++L L + GN QSLP + +L+ L L L + LQSLP+ L YL+
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLN 139
Query: 408 LRDCKMLQSLPALPL----CLESLDLRDCNMLRSLPE 440
L LQSLP L LDL N L+SLPE
Sbjct: 140 LAH-NQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPE 174
>pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant)
pdb|1I45|B Chain B, Yeast Triosephosphate Isomerase (Mutant)
Length = 248
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 140 SFPSNLHFV-CPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDL 194
S P N+ V CP Y V+L++ PQ++ YL S +S++ + D+
Sbjct: 31 SIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDV 86
>pdb|1NF0|A Chain A, Triosephosphate Isomerase In Complex With Dhap
pdb|1NF0|B Chain B, Triosephosphate Isomerase In Complex With Dhap
pdb|1NEY|A Chain A, Triosephosphate Isomerase In Complex With Dhap
pdb|1NEY|B Chain B, Triosephosphate Isomerase In Complex With Dhap
Length = 247
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 140 SFPSNLHFV-CPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDL 194
S P N+ V CP Y V+L++ PQ++ YL S +S++ + D+
Sbjct: 30 SIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDV 85
>pdb|2Y3A|A Chain A, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 1092
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 346 VMEIPQEIARLSSLIDLHIGGNNFQSLPASI---KQLSQLSSLELN-------DCK--ML 393
++E E+A S GG F ++ I LSQL E++ DC+
Sbjct: 533 IIEKAAELASGDSANVSSRGGKKFLAVLKEILDRDPLSQLCENEMDLIWTLRQDCRENFP 592
Query: 394 QSLPELPLCLKYLHLRDCKMLQSL----PALPLCLESLDLRDCN 433
QSLP+L L +K+ L D LQ+L P LP E+L+L D N
Sbjct: 593 QSLPKLLLSIKWNKLEDVAQLQALLQIWPKLP-PREALELLDFN 635
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 219 VDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDK 278
+DL NG + + LE++EHL + + ++E S F +L L L +S
Sbjct: 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVA 141
Query: 279 LPDNIGNLESLHHMSAFGSAISQ--LPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSL 336
L SL + G++ + LP + L LD S+C+ + P + LSSL
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 337 VALHIRN 343
L++ +
Sbjct: 202 QVLNMSH 208
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 314 ILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVM-EIPQEIARLSSLIDLHIGGNNFQ-S 371
ILDF+ G P L ++L + + N + EIP+ I RL +L L + N+F +
Sbjct: 469 ILDFNDLTG--EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 372 LPASIKQLSQLSSLELNDCKMLQSLP 397
+PA + L L+LN ++P
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIP 552
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 314 ILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVM-EIPQEIARLSSLIDLHIGGNNFQ-S 371
ILDF+ G P L ++L + + N + EIP+ I RL +L L + N+F +
Sbjct: 472 ILDFNDLTG--EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 372 LPASIKQLSQLSSLELNDCKMLQSLP 397
+PA + L L+LN ++P
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIP 555
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 30/184 (16%)
Query: 252 ITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAIS-QLPSSVAD-S 309
+ +P + LT L L ++ + +PD + +++L + +A+S LP S++
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 310 NVLGI-LDFSRCKGLESFPRSLLGLSSL-VALHI-RNFAVMEIPQEIARLS-SLIDL--- 362
N++GI D +R G + P S S L ++ I RN +IP A L+ + +DL
Sbjct: 150 NLVGITFDGNRISG--AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207
Query: 363 -------------------HIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLPELPLCL 403
H+ N+ + L+ L+L + ++ +LP+ L
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 404 KYLH 407
K+LH
Sbjct: 268 KFLH 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,019,648
Number of Sequences: 62578
Number of extensions: 605865
Number of successful extensions: 1210
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1096
Number of HSP's gapped (non-prelim): 115
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)