Query 037604
Match_columns 540
No_of_seqs 506 out of 4272
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 02:37:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.9E-43 6.4E-48 394.2 29.2 469 6-505 70-583 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-42 2.4E-47 389.5 27.2 447 9-467 97-568 (968)
3 PLN03210 Resistant to P. syrin 100.0 2.4E-31 5.1E-36 298.3 30.6 369 1-418 530-910 (1153)
4 KOG4194 Membrane glycoprotein 100.0 1.6E-34 3.5E-39 277.5 4.1 376 8-409 55-447 (873)
5 KOG4194 Membrane glycoprotein 100.0 1.4E-32 3.1E-37 264.2 3.2 354 8-389 81-448 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 9.2E-34 2E-38 261.0 -13.3 365 9-390 49-468 (565)
7 KOG0444 Cytoskeletal regulator 100.0 2.2E-32 4.7E-37 264.8 -5.6 357 28-415 6-376 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 2.6E-32 5.7E-37 264.2 -5.5 360 10-397 12-379 (1255)
9 KOG0472 Leucine-rich repeat pr 100.0 1.1E-31 2.5E-36 247.2 -10.9 370 9-393 72-541 (565)
10 PLN03210 Resistant to P. syrin 99.9 1E-25 2.2E-30 253.1 26.7 333 119-460 552-910 (1153)
11 KOG0618 Serine/threonine phosp 99.9 2.9E-29 6.2E-34 253.9 -2.4 392 8-435 24-489 (1081)
12 KOG0618 Serine/threonine phosp 99.9 5E-26 1.1E-30 230.6 -0.1 375 4-414 44-489 (1081)
13 PRK15387 E3 ubiquitin-protein 99.8 2.4E-19 5.1E-24 187.8 16.6 219 72-325 242-460 (788)
14 PRK15387 E3 ubiquitin-protein 99.8 3.8E-19 8.3E-24 186.3 18.0 260 73-396 202-461 (788)
15 KOG4237 Extracellular matrix p 99.8 3.9E-21 8.5E-26 177.7 -2.1 239 9-274 71-357 (498)
16 PRK15370 E3 ubiquitin-protein 99.7 1.6E-17 3.4E-22 175.3 14.7 240 172-435 181-428 (754)
17 PRK15370 E3 ubiquitin-protein 99.7 1.3E-17 2.9E-22 175.9 13.9 225 127-373 180-404 (754)
18 KOG4237 Extracellular matrix p 99.7 2.6E-19 5.6E-24 165.8 -5.8 270 69-345 64-357 (498)
19 cd00116 LRR_RI Leucine-rich re 99.7 9.3E-18 2E-22 164.5 0.4 185 186-370 75-291 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 4.5E-17 9.8E-22 159.6 0.8 209 185-393 44-291 (319)
21 KOG0617 Ras suppressor protein 99.6 2.8E-17 6.2E-22 135.2 -4.4 58 333-390 126-183 (264)
22 KOG0617 Ras suppressor protein 99.6 8.2E-17 1.8E-21 132.5 -4.8 164 212-378 29-194 (264)
23 KOG4658 Apoptotic ATPase [Sign 99.4 6.8E-13 1.5E-17 142.7 7.3 126 73-226 524-652 (889)
24 KOG4658 Apoptotic ATPase [Sign 99.3 5.4E-12 1.2E-16 135.8 7.3 248 168-418 522-787 (889)
25 KOG0532 Leucine-rich repeat (L 99.2 4.7E-13 1E-17 130.3 -2.4 224 174-404 55-283 (722)
26 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3E-15 117.0 7.4 197 196-397 97-294 (394)
27 KOG3207 Beta-tubulin folding c 99.1 1.8E-11 4E-16 115.8 0.3 107 286-392 196-313 (505)
28 KOG1909 Ran GTPase-activating 99.0 1E-11 2.2E-16 114.4 -5.0 186 188-392 88-310 (382)
29 COG4886 Leucine-rich repeat (L 99.0 7.8E-10 1.7E-14 111.6 8.0 177 170-351 117-294 (394)
30 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.4E-15 110.6 1.0 134 188-321 142-282 (505)
31 KOG1909 Ran GTPase-activating 98.9 1.5E-10 3.3E-15 106.7 0.6 177 237-413 89-310 (382)
32 PF14580 LRR_9: Leucine-rich r 98.9 8.1E-10 1.8E-14 95.6 4.4 17 354-370 110-126 (175)
33 KOG0532 Leucine-rich repeat (L 98.9 4.7E-11 1E-15 116.6 -3.9 191 216-412 75-271 (722)
34 KOG1259 Nischarin, modulator o 98.9 1.2E-10 2.5E-15 105.1 -1.1 128 263-394 284-413 (490)
35 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.7E-14 94.4 4.4 120 286-409 18-148 (175)
36 KOG1259 Nischarin, modulator o 98.8 6.6E-10 1.4E-14 100.3 0.8 201 63-277 206-413 (490)
37 PRK15386 type III secretion pr 98.8 3E-08 6.6E-13 96.2 9.1 30 442-471 155-184 (426)
38 PRK15386 type III secretion pr 98.6 3.9E-07 8.4E-12 88.7 11.3 148 287-453 52-210 (426)
39 PLN03150 hypothetical protein; 98.6 1.8E-07 3.8E-12 99.1 9.1 87 312-398 420-508 (623)
40 PLN03150 hypothetical protein; 98.5 1.8E-07 3.8E-12 99.1 8.1 109 217-325 419-530 (623)
41 KOG0531 Protein phosphatase 1, 98.5 1.2E-08 2.7E-13 103.1 -1.3 219 67-323 91-318 (414)
42 PF13855 LRR_8: Leucine rich r 98.5 8.4E-08 1.8E-12 68.0 2.8 57 73-136 2-60 (61)
43 KOG2120 SCF ubiquitin ligase, 98.4 4.6E-09 1E-13 94.9 -5.7 179 193-391 186-374 (419)
44 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 5E-12 65.7 3.6 60 94-160 1-61 (61)
45 KOG0531 Protein phosphatase 1, 98.4 2.5E-08 5.5E-13 100.8 -2.1 175 188-370 91-268 (414)
46 KOG2120 SCF ubiquitin ligase, 98.4 4E-09 8.7E-14 95.3 -7.0 103 331-433 257-374 (419)
47 KOG4341 F-box protein containi 98.3 2.1E-08 4.6E-13 94.9 -4.7 205 190-394 214-440 (483)
48 KOG4341 F-box protein containi 98.3 2.5E-08 5.5E-13 94.4 -5.5 268 192-459 138-442 (483)
49 KOG1859 Leucine-rich repeat pr 98.0 8.4E-08 1.8E-12 96.9 -7.7 182 185-373 102-295 (1096)
50 KOG2982 Uncharacterized conser 98.0 1.6E-06 3.5E-11 78.8 0.8 61 73-138 46-110 (418)
51 PF12799 LRR_4: Leucine Rich r 98.0 9.5E-06 2.1E-10 52.6 4.0 38 335-372 2-39 (44)
52 KOG1859 Leucine-rich repeat pr 98.0 2.6E-07 5.7E-12 93.4 -5.6 174 233-413 102-291 (1096)
53 KOG1644 U2-associated snRNP A' 97.9 1E-05 2.2E-10 69.7 4.5 105 28-159 41-151 (233)
54 PF12799 LRR_4: Leucine Rich r 97.8 3E-05 6.6E-10 50.2 4.3 37 357-393 1-37 (44)
55 KOG2982 Uncharacterized conser 97.8 1.3E-05 2.8E-10 73.0 2.8 184 214-397 69-266 (418)
56 KOG3665 ZYG-1-like serine/thre 97.6 2.5E-05 5.3E-10 82.9 1.4 128 125-253 122-263 (699)
57 KOG4579 Leucine-rich repeat (L 97.5 5.7E-06 1.2E-10 66.6 -2.9 56 335-390 78-133 (177)
58 COG5238 RNA1 Ran GTPase-activa 97.5 3.7E-05 8.1E-10 69.2 1.7 80 334-413 185-284 (388)
59 KOG3665 ZYG-1-like serine/thre 97.5 3.4E-05 7.4E-10 81.9 1.4 107 192-299 122-232 (699)
60 KOG1644 U2-associated snRNP A' 97.5 0.0002 4.4E-09 61.8 5.7 85 70-161 40-126 (233)
61 COG5238 RNA1 Ran GTPase-activa 97.5 7.5E-05 1.6E-09 67.3 3.0 59 334-392 157-226 (388)
62 KOG4579 Leucine-rich repeat (L 97.4 5.4E-06 1.2E-10 66.7 -4.6 89 286-375 52-141 (177)
63 KOG1947 Leucine rich repeat pr 96.8 9E-05 1.9E-09 77.0 -3.7 129 262-390 187-331 (482)
64 KOG2123 Uncharacterized conser 96.7 3E-05 6.5E-10 70.1 -7.3 84 72-165 19-105 (388)
65 KOG2739 Leucine-rich acidic nu 96.6 0.0015 3.2E-08 59.1 3.0 14 378-391 114-127 (260)
66 KOG1947 Leucine rich repeat pr 96.5 0.00029 6.2E-09 73.3 -2.9 34 124-157 187-223 (482)
67 PF13306 LRR_5: Leucine rich r 95.6 0.039 8.3E-07 45.5 6.8 14 212-225 31-44 (129)
68 KOG2739 Leucine-rich acidic nu 95.6 0.0089 1.9E-07 54.2 2.9 81 240-321 43-127 (260)
69 PF13306 LRR_5: Leucine rich r 95.0 0.1 2.2E-06 43.0 7.3 106 19-157 2-112 (129)
70 PF00560 LRR_1: Leucine Rich R 95.0 0.012 2.6E-07 31.6 1.1 19 359-377 2-20 (22)
71 KOG2123 Uncharacterized conser 95.0 0.001 2.3E-08 60.4 -5.0 100 28-154 18-123 (388)
72 PF13504 LRR_7: Leucine rich r 94.2 0.036 7.8E-07 27.5 1.6 15 358-372 2-16 (17)
73 PF13504 LRR_7: Leucine rich r 93.7 0.038 8.2E-07 27.4 1.1 16 73-88 2-17 (17)
74 PF00560 LRR_1: Leucine Rich R 93.6 0.026 5.7E-07 30.2 0.5 16 242-257 2-17 (22)
75 KOG4308 LRR-containing protein 93.1 0.001 2.3E-08 67.6 -10.1 82 194-275 89-184 (478)
76 KOG0473 Leucine-rich repeat pr 91.5 0.0074 1.6E-07 53.6 -5.3 55 73-135 66-121 (326)
77 KOG4308 LRR-containing protein 89.3 0.0042 9.2E-08 63.3 -10.1 178 171-348 89-304 (478)
78 smart00369 LRR_TYP Leucine-ric 87.8 0.46 1E-05 26.4 1.9 19 357-375 2-20 (26)
79 smart00370 LRR Leucine-rich re 87.8 0.46 1E-05 26.4 1.9 19 357-375 2-20 (26)
80 KOG0473 Leucine-rich repeat pr 86.5 0.045 9.7E-07 48.8 -4.1 52 61-113 78-130 (326)
81 KOG3864 Uncharacterized conser 85.9 0.16 3.6E-06 44.4 -0.9 34 356-389 150-185 (221)
82 smart00370 LRR Leucine-rich re 84.4 0.9 2E-05 25.2 2.0 20 239-258 1-20 (26)
83 smart00369 LRR_TYP Leucine-ric 84.4 0.9 2E-05 25.2 2.0 20 239-258 1-20 (26)
84 smart00364 LRR_BAC Leucine-ric 84.2 0.68 1.5E-05 25.8 1.3 19 72-90 2-20 (26)
85 KOG3864 Uncharacterized conser 80.8 0.33 7.3E-06 42.5 -1.1 90 86-201 92-185 (221)
86 PF07725 LRR_3: Leucine Rich R 79.6 1.9 4.1E-05 22.4 1.9 19 95-113 1-19 (20)
87 smart00365 LRR_SD22 Leucine-ri 77.2 1.5 3.2E-05 24.5 1.2 18 28-45 1-18 (26)
88 PF13516 LRR_6: Leucine Rich r 70.7 2.8 6.2E-05 22.6 1.3 15 94-108 2-16 (24)
89 smart00367 LRR_CC Leucine-rich 61.6 8.1 0.00018 21.3 2.0 22 493-514 2-23 (26)
90 KOG3763 mRNA export factor TAP 58.2 6.1 0.00013 40.4 1.8 63 333-396 217-286 (585)
91 KOG4242 Predicted myosin-I-bin 57.0 31 0.00068 34.8 6.3 55 336-390 415-478 (553)
92 smart00368 LRR_RI Leucine rich 52.2 9.2 0.0002 21.7 1.2 14 94-107 2-15 (28)
93 KOG3763 mRNA export factor TAP 42.0 12 0.00026 38.3 1.1 67 92-163 216-285 (585)
94 PF05725 FNIP: FNIP Repeat; I 33.9 83 0.0018 20.0 3.7 33 70-102 10-42 (44)
95 TIGR00864 PCC polycystin catio 21.8 60 0.0013 40.5 2.3 32 11-42 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-43 Score=394.18 Aligned_cols=469 Identities=20% Similarity=0.248 Sum_probs=255.0
Q ss_pred EEEEeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCC-ccccCcEEEeecCCCC
Q 037604 6 EGIFLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLD-YLPEKLRYLHWDTYPL 84 (540)
Q Consensus 6 ~~i~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~L~~L~l~~~~l 84 (540)
+...||++++.+....+.+|..+++|++|++++|+++ +.+|..+. .+ .+|++|++++|.+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~------------------~~ip~~~~~~l-~~L~~L~Ls~n~l 130 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS------------------GPIPDDIFTTS-SSLRYLNLSNNNF 130 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC------------------CcCChHHhccC-CCCCEEECcCCcc
Confidence 4456667777666677889999999999999999986 34454443 33 3556666655555
Q ss_pred CCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccc
Q 037604 85 RILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIE 163 (540)
Q Consensus 85 ~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~ 163 (540)
....+...+++|++|++++|.+... +|..++++++|++|++++|.+.+.+|..+ .+++|++|++++|.+.+.
T Consensus 131 ~~~~p~~~l~~L~~L~Ls~n~~~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 203 (968)
T PLN00113 131 TGSIPRGSIPNLETLDLSNNMLSGE-------IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203 (968)
T ss_pred ccccCccccCCCCEEECcCCccccc-------CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc
Confidence 3222222345555555555555422 45555555555555555555555555555 555555555555555444
Q ss_pred cCCCC---CCeeEEEcccCCce-eccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCC
Q 037604 164 FPQIS---GKITRLYLGCSAIE-EVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKM 239 (540)
Q Consensus 164 ~~~~~---~~l~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 239 (540)
+|..+ .+|+.|+++.|.+. .+|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+..+
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 283 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283 (968)
T ss_pred CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc
Confidence 44322 23355555555544 445555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCEEEcCCCCCc-ccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCC-CCccccCCCCccEEEc
Q 037604 240 EHLKCINLDRTAIT-ELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQ-LPSSVADSNVLGILDF 317 (540)
Q Consensus 240 ~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L~l 317 (540)
++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+ +|..++.+++|+.|++
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence 55555555555544 344444555555555555555554445445555555555555554442 3444444445555555
Q ss_pred cCC------------------------CCCCcccccccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCCCc-c
Q 037604 318 SRC------------------------KGLESFPRSLLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQ-S 371 (540)
Q Consensus 318 ~~~------------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~-~ 371 (540)
++| .+.+.+|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++ .
T Consensus 364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 544 4444444445555555555555555554 4555555555666666655554 3
Q ss_pred cchhccCCCCCCEEEecCCCCCCcCCCCC--CCccEEEecCCCCCCcCCCCC---CCccEEeecCCCCCCCCCCc---cc
Q 037604 372 LPASIKQLSQLSSLELNDCKMLQSLPELP--LCLKYLHLRDCKMLQSLPALP---LCLESLDLRDCNMLRSLPEL---PL 443 (540)
Q Consensus 372 lp~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~---~~L~~L~l~~~~~l~~~~~~---~~ 443 (540)
+|..+..+++|+.|++++|.+.+.+|..+ ++|+.|++++|...+.+|..+ .+|+.|++++|...+.+|.. ..
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence 34444555666666666666555555432 566777777776666665433 34777777777776666643 34
Q ss_pred cccccccccccccccCCCCCccccccchhhhhhhccCCCccccccccc---ccCCeEeeeccccc
Q 037604 444 CLQELDATNCNRLQSLAEIPSCLQELDASVLETLSKLSPDFRVWLPAF---LLQPIYFGFINSLK 505 (540)
Q Consensus 444 ~L~~L~i~~c~~l~~~~~~~~~l~~L~~~~~~~l~~l~~~~~~~lp~~---~~~l~~l~~~~c~~ 505 (540)
+|++|++++|.--..++.....+++|+.+++.. +.+.+.+|.. +..+..+++++|.-
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-----N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ-----NQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCC-----CcccccCChhHhcCcccCEEeccCCcc
Confidence 566666666543322222111222232222221 2233344443 44567778887764
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-42 Score=389.51 Aligned_cols=447 Identities=21% Similarity=0.255 Sum_probs=367.2
Q ss_pred EeecCccccc-ccCchhhhccccCceeeeeccccccchhhhccchhhhhccccc----ccCCCCCccccCcEEEeecCCC
Q 037604 9 FLDLSKIKGI-NLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKV----QLPNGLDYLPEKLRYLHWDTYP 83 (540)
Q Consensus 9 ~L~~~~~~~~-~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~L~~L~l~~~~ 83 (540)
+||+++|++. .++.+.|.++++|++|++++|.+.|.-....+..++.++.+.. .+|..+..+ .+|++|++++|.
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l-~~L~~L~L~~n~ 175 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNV 175 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcC-CCCCEEECccCc
Confidence 4667777655 5777778899999999999999876544455566666665543 345667777 488888888888
Q ss_pred CC-CCCCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcC
Q 037604 84 LR-ILPSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVN 160 (540)
Q Consensus 84 l~-~l~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~ 160 (540)
+. .+|..+ ++++|++|++++|.+... +|..++++++|++|++++|.+.+.+|..+ .+++|++|++++|.+
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQ-------IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCc-------CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 74 566655 788888888888887643 78888888899999998888888888888 888999999988888
Q ss_pred ccccCCCC---CCeeEEEcccCCce-eccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhh
Q 037604 161 LIEFPQIS---GKITRLYLGCSAIE-EVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEIL 236 (540)
Q Consensus 161 ~~~~~~~~---~~l~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 236 (540)
.+..|..+ .+|++|+++.|.+. .+|.++.++++|++|++++|.+.+.+|..+.++++|++|++++|...+.+|..+
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 77777544 45688888888876 677788888899999999888888888888888999999999988888888888
Q ss_pred hCCCCCCEEEcCCCCCc-ccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCC-CCccccCCCCccE
Q 037604 237 EKMEHLKCINLDRTAIT-ELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQ-LPSSVADSNVLGI 314 (540)
Q Consensus 237 ~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~ 314 (540)
..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++.+|.+.+ +|..+..+++|+.
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~ 408 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence 88999999999998887 677788888999999999988888888888888899999999998875 5788899999999
Q ss_pred EEccCCCCCCcccccccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCCCc-ccchhccCCCCCCEEEecCCCC
Q 037604 315 LDFSRCKGLESFPRSLLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQ-SLPASIKQLSQLSSLELNDCKM 392 (540)
Q Consensus 315 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~ 392 (540)
|++++|.+.+.+|..+..++.|+.|++++|.+.+ ++..+..+++|+.|++++|++. .+|..+ ..++|+.|++++|++
T Consensus 409 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l 487 (968)
T PLN00113 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQF 487 (968)
T ss_pred EECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCcc
Confidence 9999999999999999999999999999999988 6777888999999999999976 556544 568999999999999
Q ss_pred CCcCCCCC---CCccEEEecCCCCCCcCCCCC---CCccEEeecCCCCCCCCCCc---cccccccccccccccccCCCCC
Q 037604 393 LQSLPELP---LCLKYLHLRDCKMLQSLPALP---LCLESLDLRDCNMLRSLPEL---PLCLQELDATNCNRLQSLAEIP 463 (540)
Q Consensus 393 ~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~---~~L~~L~l~~~~~l~~~~~~---~~~L~~L~i~~c~~l~~~~~~~ 463 (540)
.+.+|..+ ++|+.|++++|...+.+|..+ .+|++|++++|...+.+|.. .++|+.|++++|.-.. .+|
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~---~~p 564 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG---EIP 564 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc---cCC
Confidence 88888544 789999999999888888654 45999999999999988864 3578888888875443 345
Q ss_pred cccc
Q 037604 464 SCLQ 467 (540)
Q Consensus 464 ~~l~ 467 (540)
..+.
T Consensus 565 ~~l~ 568 (968)
T PLN00113 565 KNLG 568 (968)
T ss_pred hhHh
Confidence 4433
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.4e-31 Score=298.35 Aligned_cols=369 Identities=34% Similarity=0.591 Sum_probs=278.4
Q ss_pred CCCceEEEEeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeec
Q 037604 1 GTDAIEGIFLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWD 80 (540)
Q Consensus 1 ~~~~~~~i~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~ 80 (540)
||+++++|.+|.+..+...+.+++|.++++|+.|.+..+.... .......+|+++..+|.+|+.|++.
T Consensus 530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~------------~~~~~~~lp~~~~~lp~~Lr~L~~~ 597 (1153)
T PLN03210 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ------------KKEVRWHLPEGFDYLPPKLRLLRWD 597 (1153)
T ss_pred ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc------------cccceeecCcchhhcCcccEEEEec
Confidence 7889999999999998889999999999999999997764310 0011146788899998899999999
Q ss_pred CCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCCccCCCcEEEccCCcC
Q 037604 81 TYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNLHFVCPVTIDFSYCVN 160 (540)
Q Consensus 81 ~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 160 (540)
++++..+|..+.+.+|++|++++|.+..+| ..+..+++|+.|++++|...+.+|....+++|+.|++++|..
T Consensus 598 ~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~--------~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 598 KYPLRCMPSNFRPENLVKLQMQGSKLEKLW--------DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSS 669 (1153)
T ss_pred CCCCCCCCCcCCccCCcEEECcCccccccc--------cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCC
Confidence 999999999999999999999999998754 446779999999999988788888644888899999988755
Q ss_pred ccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCC
Q 037604 161 LIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKME 240 (540)
Q Consensus 161 ~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 240 (540)
.. .+|.++.++++|+.|++++|...+.+|..+ ++++|++|++++|...+.+|.. ..
T Consensus 670 L~--------------------~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~ 725 (1153)
T PLN03210 670 LV--------------------ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---ST 725 (1153)
T ss_pred cc--------------------ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cC
Confidence 43 445566777788888888877777777654 5778888888887766666542 45
Q ss_pred CCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCC-------cCCCCCCCCCCCcEEEccCCC-CCCCCccccCCCCc
Q 037604 241 HLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLD-------KLPDNIGNLESLHHMSAFGSA-ISQLPSSVADSNVL 312 (540)
Q Consensus 241 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~-------~l~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~l~~L 312 (540)
+|+.|++++|.++.+|..+ .+++|+.|.+.++.... ..+......++|+.|++++|. +..+|..++++++|
T Consensus 726 nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L 804 (1153)
T PLN03210 726 NISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL 804 (1153)
T ss_pred CcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC
Confidence 6778888888887777654 56777777776643211 011112234678888888774 44577778888888
Q ss_pred cEEEccCCCCCCcccccccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCC
Q 037604 313 GILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCK 391 (540)
Q Consensus 313 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~ 391 (540)
+.|++++|...+.+|... .+++|+.|++++|.... +|. ..++|+.|++++|.++.+|.++..+++|+.|++++|.
T Consensus 805 ~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 805 EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred CEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCC
Confidence 888888887777777655 67788888888875433 443 2357888888888888888888888888888888888
Q ss_pred CCCcCCCCC---CCccEEEecCCCCCCcCC
Q 037604 392 MLQSLPELP---LCLKYLHLRDCKMLQSLP 418 (540)
Q Consensus 392 ~~~~~~~~~---~~L~~L~l~~~~~l~~~~ 418 (540)
.+..+|..+ ++|+.+++++|..+..++
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CcCccCcccccccCCCeeecCCCccccccc
Confidence 777776433 667777888887776543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-34 Score=277.54 Aligned_cols=376 Identities=20% Similarity=0.165 Sum_probs=305.2
Q ss_pred EEeecCcccccccCchhhhccccC--ceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCC
Q 037604 8 IFLDLSKIKGINLDPGTFTNMSNM--RLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLR 85 (540)
Q Consensus 8 i~L~~~~~~~~~~~~~~f~~l~~L--~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~ 85 (540)
..||.+++++..++-..+.++--. ++|++++|.++ ..-+..+..+| +|+.+++..|.++
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~------------------~id~~~f~nl~-nLq~v~l~~N~Lt 115 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS------------------HIDFEFFYNLP-NLQEVNLNKNELT 115 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccc------------------cCcHHHHhcCC-cceeeeeccchhh
Confidence 456777776666655555554444 45999999886 44455677785 9999999999999
Q ss_pred CCCCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccc
Q 037604 86 ILPSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIE 163 (540)
Q Consensus 86 ~l~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~ 163 (540)
.||... ...||+.|+|.+|.|.++ -.+.+..++.|++|||+.|.+...--..+ .-.++++|+|++|.+...
T Consensus 116 ~IP~f~~~sghl~~L~L~~N~I~sv-------~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l 188 (873)
T KOG4194|consen 116 RIPRFGHESGHLEKLDLRHNLISSV-------TSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL 188 (873)
T ss_pred hcccccccccceeEEeeeccccccc-------cHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc
Confidence 999987 566799999999999876 44678889999999999976544333344 667899999999988655
Q ss_pred cCC---CCCCeeEEEcccCCceecccc-ccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCC
Q 037604 164 FPQ---ISGKITRLYLGCSAIEEVPSS-IECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKM 239 (540)
Q Consensus 164 ~~~---~~~~l~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 239 (540)
-.+ .+.+|..|.|+.|.++.+|.- |.++++|+.|+|..|.+...-...|.++++|+.|.+..|.+...-...|..+
T Consensus 189 ~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 189 ETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL 268 (873)
T ss_pred ccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence 443 344668889999999999854 5569999999999987654434568999999999999988776666788899
Q ss_pred CCCCEEEcCCCCCcccCc-ccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC-CccccCCCCccEEEc
Q 037604 240 EHLKCINLDRTAITELPS-SFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL-PSSVADSNVLGILDF 317 (540)
Q Consensus 240 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l 317 (540)
.++++|+++.|+++.+.. ++..++.|+.|++++|.+...-+..++.+++|++|+++.|.++.+ +..+..+..|++|++
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 999999999999997654 578999999999999999888888999999999999999999999 456888899999999
Q ss_pred cCCCCCCcccccccCCCCCcEEeccCCCCCC----CChhhcCCCCCcEEEecCCCCcccch-hccCCCCCCEEEecCCCC
Q 037604 318 SRCKGLESFPRSLLGLSSLVALHIRNFAVME----IPQEIARLSSLIDLHIGGNNFQSLPA-SIKQLSQLSSLELNDCKM 392 (540)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~ 392 (540)
++|.+.......|..+++|++|++++|.+.- -...+..+++|+.|.+.||++..+|. .+..+++|+.|++.+|.+
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 9999776666678899999999999998865 33346779999999999999999984 688999999999999987
Q ss_pred CCcCCCCC--CCccEEEec
Q 037604 393 LQSLPELP--LCLKYLHLR 409 (540)
Q Consensus 393 ~~~~~~~~--~~L~~L~l~ 409 (540)
-..-|..+ ..|++|.+.
T Consensus 429 aSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 429 ASIQPNAFEPMELKELVMN 447 (873)
T ss_pred eeecccccccchhhhhhhc
Confidence 66555544 467777654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.4e-32 Score=264.21 Aligned_cols=354 Identities=19% Similarity=0.173 Sum_probs=271.3
Q ss_pred EEeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCC
Q 037604 8 IFLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRIL 87 (540)
Q Consensus 8 i~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l 87 (540)
-.||+++|++.+++...|.+++||+.+++..|.+ ..+|...... .+|+.|+|.+|.+.++
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-------------------t~IP~f~~~s-ghl~~L~L~~N~I~sv 140 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-------------------TRIPRFGHES-GHLEKLDLRHNLISSV 140 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchh-------------------hhcccccccc-cceeEEeeeccccccc
Confidence 3599999999999999999999999999999998 5666643333 5788888888888777
Q ss_pred CCCC--CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCcccc
Q 037604 88 PSNF--KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIEF 164 (540)
Q Consensus 88 ~~~~--~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~ 164 (540)
.+.. .++.|++||||.|.|+.+ --..|..-.++++|+|++|.++..-...| .+.+|..|.|++|.+.+-.
T Consensus 141 ~se~L~~l~alrslDLSrN~is~i-------~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 141 TSEELSALPALRSLDLSRNLISEI-------PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred cHHHHHhHhhhhhhhhhhchhhcc-------cCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 6653 677888888888888764 22456666778888888877766556666 7778888888888765544
Q ss_pred CCC---CCCeeEEEcccCCceec-cccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCC
Q 037604 165 PQI---SGKITRLYLGCSAIEEV-PSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKME 240 (540)
Q Consensus 165 ~~~---~~~l~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 240 (540)
+.. +.+|+.|+|..|.|..+ .-.|..+++|+.|.+..|.+...-...|..+.++++|+++.|+....-..++.+++
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 333 34557788888887755 34577788888888888877665556677888888888888877766667788888
Q ss_pred CCCEEEcCCCCCccc-CcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC-CccccCCCCccEEEcc
Q 037604 241 HLKCINLDRTAITEL-PSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL-PSSVADSNVLGILDFS 318 (540)
Q Consensus 241 ~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~ 318 (540)
+|+.|+++.|.|..+ ++.+..+++|+.|+++.|.+..--+..|..+..|++|.+++|.+..+ ...|..+++|++|+++
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 888888888888855 34577778888899888888777777788888888889988888877 3446778888889988
Q ss_pred CCCCCCcc---cccccCCCCCcEEeccCCCCCCCCh-hhcCCCCCcEEEecCCCCccc-chhccCCCCCCEEEecC
Q 037604 319 RCKGLESF---PRSLLGLSSLVALHIRNFAVMEIPQ-EIARLSSLIDLHIGGNNFQSL-PASIKQLSQLSSLELND 389 (540)
Q Consensus 319 ~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~ 389 (540)
+|.+...+ ...+.++++|+.|.+.+|++..++. .+..+++|++|+|.+|.+.++ |..|..+ .|++|.+..
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 88865443 3346778888899999998888664 578888999999988887655 4556666 788777653
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=9.2e-34 Score=260.98 Aligned_cols=365 Identities=22% Similarity=0.297 Sum_probs=234.7
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccch----hhhccchhhhhcccccccCCCCCccccCcEEEeecCCCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIE----RFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPL 84 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l 84 (540)
.+++++|+...+.+ .+.++..|.+|++.+|+++.++ +++.+..+....-+...+|+.+..++ +++.+++++|.+
T Consensus 49 ~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~-~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 49 KLILSHNDLEVLRE-DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLI-SLVKLDCSSNEL 126 (565)
T ss_pred hhhhccCchhhccH-hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhh-hhhhhhccccce
Confidence 45566665555544 5667777777777777665442 23333333333333356777777774 888888888888
Q ss_pred CCCCCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCcc
Q 037604 85 RILPSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLI 162 (540)
Q Consensus 85 ~~l~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~ 162 (540)
.++++.+ .+..++.++..+|++++ +|+.+..+.+|..+++.+|+.. .+|+.. .++.|+++|...| ..+
T Consensus 127 ~el~~~i~~~~~l~dl~~~~N~i~s--------lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N-~L~ 196 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDLDATNNQISS--------LPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSN-LLE 196 (565)
T ss_pred eecCchHHHHhhhhhhhcccccccc--------CchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchh-hhh
Confidence 8887776 77788888888888876 7778888888888888886654 444444 8888888888776 456
Q ss_pred ccCCCCCCe---eEEEcccCCceeccccccCCCCCCEEEcccCccccccchhc-CCCCCCcEEeccCCcCCCcCchhhhC
Q 037604 163 EFPQISGKI---TRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRF-CKLRSLVDLCLNGCLNLERFPEILEK 238 (540)
Q Consensus 163 ~~~~~~~~l---~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~ 238 (540)
.+|..++.+ +.|++..|.+..+| .|+.+..|+.+.++.|. ...+|... .+++++..||+.+|+ ...+|..+..
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~cl 273 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICL 273 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-cccCchHHHH
Confidence 677666555 55566888888888 67888888888888765 45555544 478888888888854 4567888888
Q ss_pred CCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCC-------------------------------------CcCC-
Q 037604 239 MEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKL-------------------------------------DKLP- 280 (540)
Q Consensus 239 l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~-------------------------------------~~l~- 280 (540)
+++|++||+++|.++.+|..++++ +|+.|.+.+|+.- ...+
T Consensus 274 LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 274 LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred hhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence 888888888888888888888888 8888888887521 0001
Q ss_pred ---CCCCCCCCCcEEEccCCCCCCCCccccCCCC---ccEEEccCCCCCCcccccccCCCCCcE-EeccCCCCCCCChhh
Q 037604 281 ---DNIGNLESLHHMSAFGSAISQLPSSVADSNV---LGILDFSRCKGLESFPRSLLGLSSLVA-LHIRNFAVMEIPQEI 353 (540)
Q Consensus 281 ---~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~---L~~L~l~~~~~~~~~~~~l~~~~~L~~-L~l~~~~~~~~~~~~ 353 (540)
.......+.+.|++++-.++.+|..+..... .+..+++.|++. .+|..+..+..+.+ +.+++|.+.-+|..+
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred CcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence 0122345677788888788888776544332 566677776632 23333332222222 223333333344444
Q ss_pred cCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCC
Q 037604 354 ARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDC 390 (540)
Q Consensus 354 ~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~ 390 (540)
+.+++|..|++++|-+.++|..++.+..|+.|+++.|
T Consensus 432 ~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred Hhhhcceeeecccchhhhcchhhhhhhhhheeccccc
Confidence 4445555555555444455544444444555555544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.2e-32 Score=264.79 Aligned_cols=357 Identities=23% Similarity=0.342 Sum_probs=201.3
Q ss_pred cccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCCCCC-CCCCceEeecCCcch
Q 037604 28 MSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKV 106 (540)
Q Consensus 28 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~~~~-~~~~L~~L~Ls~n~i 106 (540)
++-.|-.++++|+++| ..+|..+..+ .+++.|.+...++..+|... .+.+|++|.+++|++
T Consensus 6 LpFVrGvDfsgNDFsg-----------------~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L 67 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSG-----------------DRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL 67 (1255)
T ss_pred cceeecccccCCcCCC-----------------CcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh
Confidence 4445667788888764 5667766666 47777777777777777665 666777777777776
Q ss_pred hhhhccccCcCCCcccCCCCCCEEecCCCCCC-cccCCCC-ccCCCcEEEccCCcCccccCCCC---CCeeEEEcccCCc
Q 037604 107 EQLWEGEKACVPSSIQNFKYLSMLNFEGCKSL-RSFPSNL-HFVCPVTIDFSYCVNLIEFPQIS---GKITRLYLGCSAI 181 (540)
Q Consensus 107 ~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~-~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~---~~l~~L~L~~~~l 181 (540)
.++ -..++.++.||.+++..|+.. ..+|..+ .+..|..|||++|++ .+.|..+ .++-.|+|++|+|
T Consensus 68 ~~v--------hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 68 ISV--------HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred Hhh--------hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccCcc
Confidence 653 233555666666666665443 2355555 666666666666543 3334322 2335566666666
Q ss_pred eecccc-ccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCc--ccCcc
Q 037604 182 EEVPSS-IECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAIT--ELPSS 258 (540)
Q Consensus 182 ~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~--~l~~~ 258 (540)
.+||.. +.+++.|-+|++++|. ...+|..+..+.+|+.|.+++|...-.--..+..+++|++|.+++++-+ .+|.+
T Consensus 139 etIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 139 ETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred ccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 666644 3455666666666654 3445555555666666666665443221222334455555555554333 55555
Q ss_pred cCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcE
Q 037604 259 FENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVA 338 (540)
Q Consensus 259 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 338 (540)
+..+.+|..++++.|. ...+|..+..+++|+.|++++|.++++....+.+.+|++|++++|+. ..+|.++..++.|+.
T Consensus 218 ld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTK 295 (1255)
T ss_pred hhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHH
Confidence 5555566666665533 23345555555666666666666655554455555555666665553 335555555555665
Q ss_pred EeccCCCCCC--CChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCCcCCC---CCCCccEEEecCCCC
Q 037604 339 LHIRNFAVME--IPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLPE---LPLCLKYLHLRDCKM 413 (540)
Q Consensus 339 L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~ 413 (540)
|.+.+|++.- +|..++.+..|+.+..++|.+.-+|..+..|++|+.|.++.|.++ .+|+ ..+-|+.|++..|+.
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 5555554432 555555555566665555555555555555556666665555433 3343 225555555555555
Q ss_pred CC
Q 037604 414 LQ 415 (540)
Q Consensus 414 l~ 415 (540)
+-
T Consensus 375 LV 376 (1255)
T KOG0444|consen 375 LV 376 (1255)
T ss_pred cc
Confidence 43
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.6e-32 Score=264.25 Aligned_cols=360 Identities=23% Similarity=0.298 Sum_probs=309.7
Q ss_pred eecCccccc-ccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCC
Q 037604 10 LDLSKIKGI-NLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILP 88 (540)
Q Consensus 10 L~~~~~~~~-~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~ 88 (540)
.|+++|+.. +--|.....++.++.|.+....+ ..+|+.+..+ .+|++|++++|++.++.
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-------------------~~vPeEL~~l-qkLEHLs~~HN~L~~vh 71 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-------------------EQVPEELSRL-QKLEHLSMAHNQLISVH 71 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhh-------------------hhChHHHHHH-hhhhhhhhhhhhhHhhh
Confidence 456666433 44466889999999999998887 6889999998 59999999999998887
Q ss_pred CCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccccCC
Q 037604 89 SNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIEFPQ 166 (540)
Q Consensus 89 ~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~ 166 (540)
... .++.|+.+.+..|++.. .| +|..+.++..|.+||||+|. ....|..+ ..+++-.|+|++|.+.+....
T Consensus 72 GELs~Lp~LRsv~~R~N~LKn--sG----iP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~ 144 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKN--SG----IPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNS 144 (1255)
T ss_pred hhhccchhhHHHhhhcccccc--CC----CCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCch
Confidence 765 89999999999999984 23 89999999999999999954 67899999 899999999999876543334
Q ss_pred CCCCe---eEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCC-CcCchhhhCCCCC
Q 037604 167 ISGKI---TRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNL-ERFPEILEKMEHL 242 (540)
Q Consensus 167 ~~~~l---~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L 242 (540)
.+-+| -.|+|++|.+..+|+.+..+.+|++|++++|.+...-...+..+.+|++|.+++.+.+ ..+|.++..+.+|
T Consensus 145 lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL 224 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNL 224 (1255)
T ss_pred HHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhh
Confidence 44444 7889999999999999999999999999999865443333455788999999885443 4589999999999
Q ss_pred CEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCC
Q 037604 243 KCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKG 322 (540)
Q Consensus 243 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~ 322 (540)
..+|++.|.+..+|..+.++++|+.|++++|.++. +....+...+|++|+++.|.++.+|..+..++.|+.|++.+|+.
T Consensus 225 ~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 225 RDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred hhccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc
Confidence 99999999999999999999999999999987654 44456677899999999999999999999999999999999985
Q ss_pred C-CcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCCcCC
Q 037604 323 L-ESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLP 397 (540)
Q Consensus 323 ~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 397 (540)
. ..+|..++.+..|+.+..++|.+.-+|..++.|+.|+.|.|+.|++..+|..+.-++.|+.|++..|+.+.-.|
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 4 45889999999999999999999999999999999999999999999999999999999999999998776444
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=1.1e-31 Score=247.23 Aligned_cols=370 Identities=20% Similarity=0.269 Sum_probs=203.6
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccch-hhhccchhhhhcccc---cccCCCCCccccCcEEEeecCCCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIE-RFLSMSIEEQLSYSK---VQLPNGLDYLPEKLRYLHWDTYPL 84 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~L~~L~l~~~~l 84 (540)
.++..+|+...+++ ++..+..++.|+.++|+++.++ ++.+...+.++.++. ..++++++.+ ..+..++..+|++
T Consensus 72 vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~-~~l~dl~~~~N~i 149 (565)
T KOG0472|consen 72 VLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRL-LDLEDLDATNNQI 149 (565)
T ss_pred EEEeccchhhhCCH-HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHH-hhhhhhhcccccc
Confidence 44555555455444 5556666666666666655553 333333333333332 3345555555 2566666666666
Q ss_pred CCCCCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCcc
Q 037604 85 RILPSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLI 162 (540)
Q Consensus 85 ~~l~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~ 162 (540)
.++|..+ .+.++..+++.+|++.. +|+..-+++.|++||... +..+.+|+.+ .+.+|.-|++.+|++.
T Consensus 150 ~slp~~~~~~~~l~~l~~~~n~l~~--------l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~- 219 (565)
T KOG0472|consen 150 SSLPEDMVNLSKLSKLDLEGNKLKA--------LPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIR- 219 (565)
T ss_pred ccCchHHHHHHHHHHhhccccchhh--------CCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccc-
Confidence 6665554 55555556666665554 222222344444444443 2334444444 4444444444444332
Q ss_pred ccCC--------------------------CCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCC
Q 037604 163 EFPQ--------------------------ISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLR 216 (540)
Q Consensus 163 ~~~~--------------------------~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 216 (540)
.+|. .+.++..||+..|.++++|+.+..+.+|.+||+++|. .+.+|..++++
T Consensus 220 ~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl- 297 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL- 297 (565)
T ss_pred cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-
Confidence 2222 2223345555555555555555555555555555544 23344445555
Q ss_pred CCcEEeccCCcCCC-------------------------------------cCc----hhhhCCCCCCEEEcCCCCCccc
Q 037604 217 SLVDLCLNGCLNLE-------------------------------------RFP----EILEKMEHLKCINLDRTAITEL 255 (540)
Q Consensus 217 ~L~~L~l~~~~~~~-------------------------------------~~~----~~l~~l~~L~~L~l~~~~l~~l 255 (540)
+|+.|.+.||...+ ..+ .......+.+.|++++-+++.+
T Consensus 298 hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V 377 (565)
T KOG0472|consen 298 HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLV 377 (565)
T ss_pred eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccC
Confidence 55555555543210 000 0001112233333333333333
Q ss_pred CcccCCCC---CCCeEccCCC-----------------------cCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCC
Q 037604 256 PSSFENLT---GLKGLSVSDC-----------------------SKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADS 309 (540)
Q Consensus 256 ~~~~~~l~---~L~~L~l~~~-----------------------~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l 309 (540)
|+.+..-. -....++++| +..+..|..++.+++|..|++++|.+.++|..++.+
T Consensus 378 PdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~l 457 (565)
T KOG0472|consen 378 PDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSL 457 (565)
T ss_pred CHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhh
Confidence 32211100 1233344443 344455666677888888888888888888888888
Q ss_pred CCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChh-hcCCCCCcEEEecCCCCcccchhccCCCCCCEEEec
Q 037604 310 NVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQE-IARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELN 388 (540)
Q Consensus 310 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~ 388 (540)
..|+.++++.|++ ..+|..+.....++.+-.++|++..+++. +..+.+|..||+.+|.+..+|+.+++|.+|++|+++
T Consensus 458 v~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 458 VRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELD 536 (565)
T ss_pred hhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEec
Confidence 8888888888864 44666666666777777777888886655 788888888888888888888888888888888888
Q ss_pred CCCCC
Q 037604 389 DCKML 393 (540)
Q Consensus 389 ~~~~~ 393 (540)
+|++.
T Consensus 537 gNpfr 541 (565)
T KOG0472|consen 537 GNPFR 541 (565)
T ss_pred CCccC
Confidence 88765
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=1e-25 Score=253.09 Aligned_cols=333 Identities=24% Similarity=0.375 Sum_probs=267.3
Q ss_pred CcccCCCCCCEEecCCCC------CCcccCCCC-cc-CCCcEEEccCCcCccccCCC--CCCeeEEEcccCCceeccccc
Q 037604 119 SSIQNFKYLSMLNFEGCK------SLRSFPSNL-HF-VCPVTIDFSYCVNLIEFPQI--SGKITRLYLGCSAIEEVPSSI 188 (540)
Q Consensus 119 ~~~~~l~~L~~L~L~~~~------~~~~~~~~~-~l-~~L~~L~L~~~~~~~~~~~~--~~~l~~L~L~~~~l~~l~~~~ 188 (540)
.+|.++++|+.|.+..+. ....+|..+ .+ .+|+.|.+.+++. ..+|.. ..+|+.|++.++.+..++.++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNFRPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcCCccCCcEEECcCcccccccccc
Confidence 457788888888886542 123456666 44 4688888888754 444532 357789999889999999889
Q ss_pred cCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCC-CCcccCcccCCCCCCCe
Q 037604 189 ECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRT-AITELPSSFENLTGLKG 267 (540)
Q Consensus 189 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~l~~~~~~l~~L~~ 267 (540)
..+++|+.|+++++...+.+|. ++.+++|++|++++|.....+|..++.+++|+.|+++++ .++.+|..+ ++++|+.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence 9999999999999887788886 888999999999999999999999999999999999985 677888766 7899999
Q ss_pred EccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCC-------cccccccCCCCCcEEe
Q 037604 268 LSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLE-------SFPRSLLGLSSLVALH 340 (540)
Q Consensus 268 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~-------~~~~~l~~~~~L~~L~ 340 (540)
|++++|.....+|.. ..+|+.|++.+|.+..+|..+ .+++|+.|.+.++.... ..+......++|+.|+
T Consensus 709 L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 709 LNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred EeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchhee
Confidence 999999888777753 468999999999999988765 57888888887754211 1111223457899999
Q ss_pred ccCCCCCC-CChhhcCCCCCcEEEecCCC-CcccchhccCCCCCCEEEecCCCCCCcCCCCCCCccEEEecCCCCCCcCC
Q 037604 341 IRNFAVME-IPQEIARLSSLIDLHIGGNN-FQSLPASIKQLSQLSSLELNDCKMLQSLPELPLCLKYLHLRDCKMLQSLP 418 (540)
Q Consensus 341 l~~~~~~~-~~~~~~~l~~L~~L~l~~~~-l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 418 (540)
+++|.... +|..++++++|+.|++++|. ++.+|..+ .+++|+.|++++|..+..+|..+++|+.|++++|. ++.+|
T Consensus 785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~-i~~iP 862 (1153)
T PLN03210 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG-IEEVP 862 (1153)
T ss_pred CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC-CccCh
Confidence 99986544 99999999999999999985 78888765 78999999999999999999888999999999986 55677
Q ss_pred CC---CCCccEEeecCCCCCCCCCCcc---ccccccccccccccccCC
Q 037604 419 AL---PLCLESLDLRDCNMLRSLPELP---LCLQELDATNCNRLQSLA 460 (540)
Q Consensus 419 ~~---~~~L~~L~l~~~~~l~~~~~~~---~~L~~L~i~~c~~l~~~~ 460 (540)
.. +.+|+.|++++|+.++.+|... .+|+.+++.+|.+++.+.
T Consensus 863 ~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 863 WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 43 4569999999999999888643 467778999999887553
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=2.9e-29 Score=253.87 Aligned_cols=392 Identities=22% Similarity=0.265 Sum_probs=249.1
Q ss_pred EEeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCC
Q 037604 8 IFLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRIL 87 (540)
Q Consensus 8 i~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l 87 (540)
+.++++.|-....+-++.++..+|+.|++++|.+ ..+|..+..++ +|+.|+++.|.+..+
T Consensus 24 ~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-------------------~~fp~~it~l~-~L~~ln~s~n~i~~v 83 (1081)
T KOG0618|consen 24 QILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-------------------SSFPIQITLLS-HLRQLNLSRNYIRSV 83 (1081)
T ss_pred HhhhccccccccCchHHhhheeeeEEeecccccc-------------------ccCCchhhhHH-HHhhcccchhhHhhC
Confidence 3455566655555555666666788888888887 45666666663 666666666666666
Q ss_pred CCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCC-------
Q 037604 88 PSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYC------- 158 (540)
Q Consensus 88 ~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~------- 158 (540)
|... ++.+|+++.|.+|.+.. +|..+..+++|+.|++++|.+ +.+|..+ .+..++.++.++|
T Consensus 84 p~s~~~~~~l~~lnL~~n~l~~--------lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg 154 (1081)
T KOG0618|consen 84 PSSCSNMRNLQYLNLKNNRLQS--------LPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLG 154 (1081)
T ss_pred chhhhhhhcchhheeccchhhc--------CchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhc
Confidence 6543 56666666666666654 566666666666666666543 2344444 4444444444443
Q ss_pred ------------cCccccCCCCCCeeE-EEcccCCceeccccccCCCC--------------------CCEEEcccCccc
Q 037604 159 ------------VNLIEFPQISGKITR-LYLGCSAIEEVPSSIECLTD--------------------LEVLDLMYCKRL 205 (540)
Q Consensus 159 ------------~~~~~~~~~~~~l~~-L~L~~~~l~~l~~~~~~l~~--------------------L~~L~l~~~~~~ 205 (540)
.+.+.++.....++. |++..|.+..+ .+..+.+ |+.|+...|.+.
T Consensus 155 ~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~ 232 (1081)
T KOG0618|consen 155 QTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT 232 (1081)
T ss_pred cccchhhhhhhhhcccchhcchhhhheeeecccchhhhh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcce
Confidence 333333333344433 55555555411 1223333 333444444333
Q ss_pred cccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCC
Q 037604 206 KRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGN 285 (540)
Q Consensus 206 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~ 285 (540)
...+. ..-.+|++++++.+... .+|++++.+.+|+.++..+|.+..+|..+...++|+.|.+..|.. ..+|.....
T Consensus 233 ~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~ 308 (1081)
T KOG0618|consen 233 TLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL-EYIPPFLEG 308 (1081)
T ss_pred eeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccc
Confidence 21111 11345677777765443 355777777777777777777777777777777777777777544 345666777
Q ss_pred CCCCcEEEccCCCCCCCCcccc--------------------------CCCCccEEEccCCCCCCcccccccCCCCCcEE
Q 037604 286 LESLHHMSAFGSAISQLPSSVA--------------------------DSNVLGILDFSRCKGLESFPRSLLGLSSLVAL 339 (540)
Q Consensus 286 l~~L~~L~l~~~~l~~l~~~~~--------------------------~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 339 (540)
...|++|++..|.+..+|..+. ..+.|+.|++.+|.+.......+.++++|+.|
T Consensus 309 ~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVL 388 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVL 388 (1081)
T ss_pred cceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeee
Confidence 8888899988888877755321 12346666777777777666677788888888
Q ss_pred eccCCCCCCCChh-hcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCCcCCCCC--CCccEEEecCCCCCC-
Q 037604 340 HIRNFAVMEIPQE-IARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLPELP--LCLKYLHLRDCKMLQ- 415 (540)
Q Consensus 340 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~L~~L~l~~~~~l~- 415 (540)
++++|++..+|+. +.+++.|++|+++||+++.+|..+..++.|++|...+|. +..+|+.. +.|+.+|++.|....
T Consensus 389 hLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 389 HLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred eecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEecccchhhhh
Confidence 8888888887764 567888888888888888888888888888888887775 44566533 788888888877543
Q ss_pred cCCCCC--CCccEEeecCCCCC
Q 037604 416 SLPALP--LCLESLDLRDCNML 435 (540)
Q Consensus 416 ~~~~~~--~~L~~L~l~~~~~l 435 (540)
.++... ++|++||+++|..+
T Consensus 468 ~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 468 TLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhhCCCcccceeeccCCccc
Confidence 233322 45888888888753
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=5e-26 Score=230.60 Aligned_cols=375 Identities=22% Similarity=0.283 Sum_probs=286.2
Q ss_pred ceEEEEeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCC
Q 037604 4 AIEGIFLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYP 83 (540)
Q Consensus 4 ~~~~i~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~ 83 (540)
+|+--+||+++|.....+. .+..+.+|+.|+++.|.+ ...|....++ .+|+++.|.+|.
T Consensus 44 ~v~L~~l~lsnn~~~~fp~-~it~l~~L~~ln~s~n~i-------------------~~vp~s~~~~-~~l~~lnL~~n~ 102 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPI-QITLLSHLRQLNLSRNYI-------------------RSVPSSCSNM-RNLQYLNLKNNR 102 (1081)
T ss_pred eeeeEEeeccccccccCCc-hhhhHHHHhhcccchhhH-------------------hhCchhhhhh-hcchhheeccch
Confidence 5666789999997766665 789999999999999998 5677777777 589999999998
Q ss_pred CCCCCCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCC-------------------CCEEecCCCCCCcccCC
Q 037604 84 LRILPSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKY-------------------LSMLNFEGCKSLRSFPS 143 (540)
Q Consensus 84 l~~l~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~-------------------L~~L~L~~~~~~~~~~~ 143 (540)
+..+|..+ .+.+|++|++++|.+.. +|..+..+.. ++.+++..+...+.++.
T Consensus 103 l~~lP~~~~~lknl~~LdlS~N~f~~--------~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~ 174 (1081)
T KOG0618|consen 103 LQSLPASISELKNLQYLDLSFNHFGP--------IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI 174 (1081)
T ss_pred hhcCchhHHhhhcccccccchhccCC--------CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc
Confidence 88888876 78888999999888764 3332222222 45555555555555555
Q ss_pred CC-ccCCCcEEEccCCcCccccCCCCC--------------------CeeEEEcccCCceeccccccCCCCCCEEEcccC
Q 037604 144 NL-HFVCPVTIDFSYCVNLIEFPQISG--------------------KITRLYLGCSAIEEVPSSIECLTDLEVLDLMYC 202 (540)
Q Consensus 144 ~~-~l~~L~~L~L~~~~~~~~~~~~~~--------------------~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~ 202 (540)
.+ .+.. .+++.+|........... +++.|+...|.+.++-. -.--.+|++++++.+
T Consensus 175 ~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n 251 (1081)
T KOG0618|consen 175 DIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHN 251 (1081)
T ss_pred chhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc-ccccccceeeecchh
Confidence 44 3333 477777766522222222 23445555555542221 122358999999998
Q ss_pred ccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCC
Q 037604 203 KRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDN 282 (540)
Q Consensus 203 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~ 282 (540)
. ...+|++++.+.+|+.+....|.+ ..+|..+....+|+.|.+..|.++.+|.....++.|++|++..|.+.. +|..
T Consensus 252 ~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~ 328 (1081)
T KOG0618|consen 252 N-LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDN 328 (1081)
T ss_pred h-hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc-cchH
Confidence 7 456779999999999999999776 668888999999999999999999999999999999999999876432 2211
Q ss_pred ------------------------C--CCCCCCcEEEccCCCCCCC-CccccCCCCccEEEccCCCCCCcccccccCCCC
Q 037604 283 ------------------------I--GNLESLHHMSAFGSAISQL-PSSVADSNVLGILDFSRCKGLESFPRSLLGLSS 335 (540)
Q Consensus 283 ------------------------~--~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 335 (540)
. ...+.|+.|++.+|.+++- -+.+.+..+|+.|++++|++.......+.++..
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH
Confidence 0 1245678888899988863 345777899999999999966555556789999
Q ss_pred CcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCC-cCC-CCC-CCccEEEecCCC
Q 037604 336 LVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQ-SLP-ELP-LCLKYLHLRDCK 412 (540)
Q Consensus 336 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~-~~~-~~~-~~L~~L~l~~~~ 412 (540)
|++|++++|+++.+|..+..++.|+.|...+|++..+| .+..++.|+.+|++.|.+.. .+| ..+ ++|++|++++|.
T Consensus 409 LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 409 LEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 99999999999999999999999999999999999999 78899999999999998764 334 344 899999999998
Q ss_pred CC
Q 037604 413 ML 414 (540)
Q Consensus 413 ~l 414 (540)
.+
T Consensus 488 ~l 489 (1081)
T KOG0618|consen 488 RL 489 (1081)
T ss_pred cc
Confidence 64
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=2.4e-19 Score=187.84 Aligned_cols=219 Identities=20% Similarity=0.203 Sum_probs=101.9
Q ss_pred cCcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCCccCCCc
Q 037604 72 EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNLHFVCPV 151 (540)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~ 151 (540)
++|++|++++|.++.+|.. .++|+.|++++|.++. +|.. ..+|+.|++++|.+. .+|. ..++|+
T Consensus 242 ~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~--------Lp~l---p~~L~~L~Ls~N~Lt-~LP~--~p~~L~ 305 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTH--------LPAL---PSGLCKLWIFGNQLT-SLPV--LPPGLQ 305 (788)
T ss_pred CCCcEEEecCCccCcccCc--ccccceeeccCCchhh--------hhhc---hhhcCEEECcCCccc-cccc--cccccc
Confidence 4566666666666665542 3456666666666554 2221 234555666655432 3333 234555
Q ss_pred EEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCc
Q 037604 152 TIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLER 231 (540)
Q Consensus 152 ~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 231 (540)
.|++++|.+. .+|..+..++.|++++|.++.+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+. .
T Consensus 306 ~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~ 376 (788)
T PRK15387 306 ELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-S 376 (788)
T ss_pred eeECCCCccc-cCCCCcccccccccccCcccccccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-c
Confidence 6666655443 2344444455555555555555431 134555555555433 23321 234444555544332 2
Q ss_pred CchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCC
Q 037604 232 FPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNV 311 (540)
Q Consensus 232 ~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~ 311 (540)
+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.++.+|..+..+++
T Consensus 377 LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~ 446 (788)
T PRK15387 377 LPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTRLPESLIHLSS 446 (788)
T ss_pred Cccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccccChHHhhccC
Confidence 3321 13445555555555544432 1344455555544332 3321 12344444555554444444444444
Q ss_pred ccEEEccCCCCCCc
Q 037604 312 LGILDFSRCKGLES 325 (540)
Q Consensus 312 L~~L~l~~~~~~~~ 325 (540)
|+.+++++|.+.+.
T Consensus 447 L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 447 ETTVNLEGNPLSER 460 (788)
T ss_pred CCeEECCCCCCCch
Confidence 44444444444443
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=3.8e-19 Score=186.27 Aligned_cols=260 Identities=17% Similarity=0.193 Sum_probs=135.4
Q ss_pred CcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCCccCCCcE
Q 037604 73 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNLHFVCPVT 152 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~ 152 (540)
+-..|+++++.++.+|..+. ++|+.|++++|.++. +|. ..++|++|++++|++. .+|.. .++|+.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~--------LP~---lp~~Lk~LdLs~N~Lt-sLP~l--p~sL~~ 266 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS--------LPA---LPPELRTLEVSGNQLT-SLPVL--PPGLLE 266 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCC--------CCC---CCCCCcEEEecCCccC-cccCc--ccccce
Confidence 45567777777777777552 467777777777765 343 2466777777776444 34432 345666
Q ss_pred EEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcC
Q 037604 153 IDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERF 232 (540)
Q Consensus 153 L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 232 (540)
|++++|.+ ..+|..+.+++.|+++.|.++.+|.. .++|+.|++++|.+.+ +|.. ..+|+.|++++|.+. .+
T Consensus 267 L~Ls~N~L-~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 267 LSIFSNPL-THLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SL 337 (788)
T ss_pred eeccCCch-hhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-cc
Confidence 66666653 24444445555666666666655542 2455666666554332 2321 123445555554332 23
Q ss_pred chhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCc
Q 037604 233 PEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVL 312 (540)
Q Consensus 233 ~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L 312 (540)
|. -..+|+.|++++|+++.+|.. ..+|+.|++ ++|.++.+|... .+|
T Consensus 338 P~---lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~L------------------------s~N~L~~LP~l~---~~L 384 (788)
T PRK15387 338 PT---LPSGLQELSVSDNQLASLPTL---PSELYKLWA------------------------YNNRLTSLPALP---SGL 384 (788)
T ss_pred cc---cccccceEecCCCccCCCCCC---Ccccceehh------------------------hccccccCcccc---ccc
Confidence 32 113455555555555544432 123444444 444444443321 234
Q ss_pred cEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCC
Q 037604 313 GILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKM 392 (540)
Q Consensus 313 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 392 (540)
+.|++++|.+.+ +|.. .++|+.|++++|.+..+|.. ..+|+.|++++|+++.+|..+..+++|+.|++++|++
T Consensus 385 ~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 385 KELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence 455555544332 2221 23455566666655555532 2345556666666666666666666666666666665
Q ss_pred CCcC
Q 037604 393 LQSL 396 (540)
Q Consensus 393 ~~~~ 396 (540)
.+..
T Consensus 458 s~~~ 461 (788)
T PRK15387 458 SERT 461 (788)
T ss_pred CchH
Confidence 5443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=3.9e-21 Score=177.73 Aligned_cols=239 Identities=18% Similarity=0.212 Sum_probs=149.4
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEe-ecCCCCCCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLH-WDTYPLRIL 87 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~-l~~~~l~~l 87 (540)
-+++..|.+..+++.+|+.+++||.|+|++|+|+ ..-|++|..++ +|..|- .++|+|+++
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is------------------~I~p~AF~GL~-~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS------------------FIAPDAFKGLA-SLLSLVLYGNNKITDL 131 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchh------------------hcChHhhhhhH-hhhHHHhhcCCchhhh
Confidence 3445556669999999999999999999999997 66788999986 555554 455999999
Q ss_pred CCCC--CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCC-CC-ccCCCcEEEccCCcCcc-
Q 037604 88 PSNF--KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPS-NL-HFVCPVTIDFSYCVNLI- 162 (540)
Q Consensus 88 ~~~~--~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~-~~-~l~~L~~L~L~~~~~~~- 162 (540)
|... ++..++.|.+.-|++.-+ ..+.|..+++|..|.+.+|.+ ..++. .+ .+..++.+.+..|+...
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Ci-------r~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCI-------RQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcch-------hHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccc
Confidence 9874 899999999999988865 556788999999999998654 44555 44 77888888887776321
Q ss_pred -----------ccCCCCCCe---eEEEcccCCce--------------------------ecc-ccccCCCCCCEEEccc
Q 037604 163 -----------EFPQISGKI---TRLYLGCSAIE--------------------------EVP-SSIECLTDLEVLDLMY 201 (540)
Q Consensus 163 -----------~~~~~~~~l---~~L~L~~~~l~--------------------------~l~-~~~~~l~~L~~L~l~~ 201 (540)
..+...+.. ....+.+.++. ..| ..|..+++|++|++++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 111111111 01111111111 111 1244555555555555
Q ss_pred CccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCccc-CcccCCCCCCCeEccCCCc
Q 037604 202 CKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITEL-PSSFENLTGLKGLSVSDCS 274 (540)
Q Consensus 202 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~ 274 (540)
|++...-+.+|.....+++|.+..|++...-...|.++..|+.|++.+|+|+.+ |..|..+..|.+|.+-.|+
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 555555455555555555555555544333334455555555555555555532 3335555555555554443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=1.6e-17 Score=175.33 Aligned_cols=240 Identities=20% Similarity=0.316 Sum_probs=134.9
Q ss_pred eEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCC
Q 037604 172 TRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTA 251 (540)
Q Consensus 172 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 251 (540)
..|+++.+.++.+|..+. ++++.|++++|.+. .+|..+. .+|++|++++|.+. .+|..+. .+|+.|++++|.
T Consensus 181 ~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 181 TELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINR 252 (754)
T ss_pred eEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCc
Confidence 455555555555554432 35566666655433 3443332 35666666655433 3444332 356666666666
Q ss_pred CcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCccccccc
Q 037604 252 ITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLL 331 (540)
Q Consensus 252 l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 331 (540)
+..+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+.. +|..+
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l- 323 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-LPETL- 323 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc-CCccc-
Confidence 666655442 35666666655444 3444332 356666666666666654332 356666666666543 33322
Q ss_pred CCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCCcCCC-CCCCccEEEecC
Q 037604 332 GLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLPE-LPLCLKYLHLRD 410 (540)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~L~~L~l~~ 410 (540)
.++|+.|++++|.++.+|..+. ++|+.|++++|+++.+|..+ .++|+.|++++|.+. .+|. .+.+|+.|++++
T Consensus 324 -~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~ 397 (754)
T PRK15370 324 -PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-NLPENLPAALQIMQASR 397 (754)
T ss_pred -cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-CCCHhHHHHHHHHhhcc
Confidence 2467777777777666665443 56777777777777666544 256777777777544 3443 335677777777
Q ss_pred CCCCCcCCCCC-------CCccEEeecCCCCC
Q 037604 411 CKMLQSLPALP-------LCLESLDLRDCNML 435 (540)
Q Consensus 411 ~~~l~~~~~~~-------~~L~~L~l~~~~~l 435 (540)
|.. ..+|..+ ..+..|++.+|+..
T Consensus 398 N~L-~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 398 NNL-VRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCc-ccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 653 3454322 34677788877754
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=1.3e-17 Score=175.92 Aligned_cols=225 Identities=21% Similarity=0.321 Sum_probs=92.2
Q ss_pred CCEEecCCCCCCcccCCCCccCCCcEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCcccc
Q 037604 127 LSMLNFEGCKSLRSFPSNLHFVCPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLK 206 (540)
Q Consensus 127 L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~ 206 (540)
...|+++++.+ ..+|..+ .+.|+.|++++|.+.........+|+.|++++|.++.+|..+. ++|+.|++++|.+.
T Consensus 180 ~~~L~L~~~~L-tsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~- 254 (754)
T PRK15370 180 KTELRLKILGL-TTIPACI-PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT- 254 (754)
T ss_pred ceEEEeCCCCc-CcCCccc-ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCccC-
Confidence 44555555332 2344332 1244555555544332111222344445554444444443322 24455555544432
Q ss_pred ccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCC
Q 037604 207 RISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNL 286 (540)
Q Consensus 207 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l 286 (540)
.+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+.. +|..+ .
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~ 324 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-LPETL--P 324 (754)
T ss_pred cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc-CCccc--c
Confidence 3333322 24445555443332 2333222 244555555554444443221 234444444443332 22221 1
Q ss_pred CCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecC
Q 037604 287 ESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGG 366 (540)
Q Consensus 287 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 366 (540)
++|+.|++++|.++.+|..+. ++|+.|++++|.+. .+|..+ .++|++|++++|.+..+|..+. ++|+.|++++
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~ 397 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASR 397 (754)
T ss_pred ccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhcc
Confidence 344444444444444443322 34444444444432 223222 1344444444444444444332 1344444444
Q ss_pred CCCcccc
Q 037604 367 NNFQSLP 373 (540)
Q Consensus 367 ~~l~~lp 373 (540)
|+++.+|
T Consensus 398 N~L~~LP 404 (754)
T PRK15370 398 NNLVRLP 404 (754)
T ss_pred CCcccCc
Confidence 4444443
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=2.6e-19 Score=165.80 Aligned_cols=270 Identities=13% Similarity=0.103 Sum_probs=147.3
Q ss_pred ccccCcEEEeecCCCCCCCCCCC--CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-
Q 037604 69 YLPEKLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL- 145 (540)
Q Consensus 69 ~l~~~L~~L~l~~~~l~~l~~~~--~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~- 145 (540)
.+|..-..++|..|+|+.||+.. .+++|+.||||+|.|+.+ -|.+|..+++|-.|-+.+++.+.++|...
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-------~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-------APDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-------ChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 45677888888888888888863 788888899998888877 67788888888888888766667777665
Q ss_pred -ccCCCcEEEccCCcCccccC---CCCCCeeEEEcccCCceeccc-cccCCCCCCEEEcccCccccc------------c
Q 037604 146 -HFVCPVTIDFSYCVNLIEFP---QISGKITRLYLGCSAIEEVPS-SIECLTDLEVLDLMYCKRLKR------------I 208 (540)
Q Consensus 146 -~l~~L~~L~L~~~~~~~~~~---~~~~~l~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~------------~ 208 (540)
++..|+.|.+.-|.+.-... ..+.++..|.+..|.+..++. .+..+..++.+.+..|.+... .
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 77788877776665533222 233344555666666666665 455666666666665542211 1
Q ss_pred chhcCCCCCCcEEeccCCcCCCcCchhhh-CCCCCCE-EEcCCCCCcccCc-ccCCCCCCCeEccCCCcCCCcCCCCCCC
Q 037604 209 STRFCKLRSLVDLCLNGCLNLERFPEILE-KMEHLKC-INLDRTAITELPS-SFENLTGLKGLSVSDCSKLDKLPDNIGN 285 (540)
Q Consensus 209 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~-L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~ 285 (540)
|..++..+...-..+.+.++...-+..+. .+..+.. +.-..+.....|. .|..+++|+.|++++|.+++.-+.+|..
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 11111111111111111111110011110 0000000 0000011111111 2455566666666666555555555555
Q ss_pred CCCCcEEEccCCCCCCC-CccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCC
Q 037604 286 LESLHHMSAFGSAISQL-PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFA 345 (540)
Q Consensus 286 l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 345 (540)
...+++|++.+|++..+ ...|.++..|+.|++.+|+++...|.+|....+|.+|.+-.|.
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 66666666666655554 2334555555556666655555555555555555555554443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=9.3e-18 Score=164.46 Aligned_cols=185 Identities=19% Similarity=0.195 Sum_probs=84.9
Q ss_pred ccccCCCCCCEEEcccCccccccchhcCCCC---CCcEEeccCCcCCC----cCchhhhCC-CCCCEEEcCCCCCc----
Q 037604 186 SSIECLTDLEVLDLMYCKRLKRISTRFCKLR---SLVDLCLNGCLNLE----RFPEILEKM-EHLKCINLDRTAIT---- 253 (540)
Q Consensus 186 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~---~L~~L~l~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~l~---- 253 (540)
..+..+++|+.|++++|.+....+..+..+. +|++|++++|...+ .+...+..+ ++|+.|++++|.++
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 3344455666666665554433333332222 26666666655442 122233444 55666666665554
Q ss_pred -ccCcccCCCCCCCeEccCCCcCCCc----CCCCCCCCCCCcEEEccCCCCCCC-----CccccCCCCccEEEccCCCCC
Q 037604 254 -ELPSSFENLTGLKGLSVSDCSKLDK----LPDNIGNLESLHHMSAFGSAISQL-----PSSVADSNVLGILDFSRCKGL 323 (540)
Q Consensus 254 -~l~~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~l~~l-----~~~~~~l~~L~~L~l~~~~~~ 323 (540)
.++..+..+++|++|++++|.+.+. ++..+...++|++|++++|.+++. ...+..+++|++|++++|.+.
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 2223344445555666655544421 112223334555555555554421 222334455555555555443
Q ss_pred Cccccccc-----CCCCCcEEeccCCCCCC-----CChhhcCCCCCcEEEecCCCCc
Q 037604 324 ESFPRSLL-----GLSSLVALHIRNFAVME-----IPQEIARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 324 ~~~~~~l~-----~~~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~l~ 370 (540)
+.....+. ..+.|++|++++|.+++ +...+..+++|+.+++++|.++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 31111110 12455555555555542 2233344455555555555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=4.5e-17 Score=159.59 Aligned_cols=209 Identities=18% Similarity=0.212 Sum_probs=120.3
Q ss_pred cccccCCCCCCEEEcccCccc------cccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCC---CCEEEcCCCCCcc-
Q 037604 185 PSSIECLTDLEVLDLMYCKRL------KRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEH---LKCINLDRTAITE- 254 (540)
Q Consensus 185 ~~~~~~l~~L~~L~l~~~~~~------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~---L~~L~l~~~~l~~- 254 (540)
+..+...+++++++++++... ..++..+..+++|++|++++|...+..+..+..+.+ |++|++++|.+..
T Consensus 44 ~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~ 123 (319)
T cd00116 44 ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR 123 (319)
T ss_pred HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchH
Confidence 333445555666666665433 233445667888888888888776655555554444 8888888887762
Q ss_pred ----cCcccCCC-CCCCeEccCCCcCCCc----CCCCCCCCCCCcEEEccCCCCCC-----CCccccCCCCccEEEccCC
Q 037604 255 ----LPSSFENL-TGLKGLSVSDCSKLDK----LPDNIGNLESLHHMSAFGSAISQ-----LPSSVADSNVLGILDFSRC 320 (540)
Q Consensus 255 ----l~~~~~~l-~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~ 320 (540)
+...+..+ ++|+.|++++|.+.+. ++..+..+++|++|++++|.+++ ++..+...++|++|++++|
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 22334555 6778888887776532 22334455667777777776663 1223344456777777766
Q ss_pred CCCCc----ccccccCCCCCcEEeccCCCCCC-CChhhc-----CCCCCcEEEecCCCCc-----ccchhccCCCCCCEE
Q 037604 321 KGLES----FPRSLLGLSSLVALHIRNFAVME-IPQEIA-----RLSSLIDLHIGGNNFQ-----SLPASIKQLSQLSSL 385 (540)
Q Consensus 321 ~~~~~----~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~-----~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L 385 (540)
.+.+. +...+..+++|++|++++|.+.+ ....+. ..+.|++|++++|.++ .+...+..+++|+++
T Consensus 204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l 283 (319)
T cd00116 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283 (319)
T ss_pred ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 65422 22334455666666666666554 111111 1356666666666654 223334445566666
Q ss_pred EecCCCCC
Q 037604 386 ELNDCKML 393 (540)
Q Consensus 386 ~l~~~~~~ 393 (540)
++++|.+.
T Consensus 284 ~l~~N~l~ 291 (319)
T cd00116 284 DLRGNKFG 291 (319)
T ss_pred ECCCCCCc
Confidence 66666544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.8e-17 Score=135.18 Aligned_cols=58 Identities=26% Similarity=0.453 Sum_probs=24.1
Q ss_pred CCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCC
Q 037604 333 LSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDC 390 (540)
Q Consensus 333 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~ 390 (540)
+..|+.|++++|.+.-+|..++++++|+.|.+..|.+-++|..++.+..|++|.+.+|
T Consensus 126 m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 3333344444444433444444444444444444444444444444444444444444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=8.2e-17 Score=132.50 Aligned_cols=164 Identities=26% Similarity=0.422 Sum_probs=139.4
Q ss_pred cCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcE
Q 037604 212 FCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHH 291 (540)
Q Consensus 212 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 291 (540)
+.++.+++.|.++.|.. ..+|..++.+.+|+.|++.+|+++++|..+..+++|+.|++.-|+ ...+|..|+.+|.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhh
Confidence 44577788888988654 456778899999999999999999999999999999999998754 4568889999999999
Q ss_pred EEccCCCCCC--CCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCC
Q 037604 292 MSAFGSAISQ--LPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNF 369 (540)
Q Consensus 292 L~l~~~~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l 369 (540)
|++.+|.+.+ +|..|..++.|+.|+++.|.+ ..+|..++.+++|+.|.+.+|.+.++|..++.++.|++|++.+|++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 9999998875 588888888899999998885 5567778899999999999999999999999999999999999999
Q ss_pred cccchhccC
Q 037604 370 QSLPASIKQ 378 (540)
Q Consensus 370 ~~lp~~l~~ 378 (540)
+.+|+.++.
T Consensus 186 ~vlppel~~ 194 (264)
T KOG0617|consen 186 TVLPPELAN 194 (264)
T ss_pred eecChhhhh
Confidence 988876654
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.37 E-value=6.8e-13 Score=142.72 Aligned_cols=126 Identities=23% Similarity=0.303 Sum_probs=74.0
Q ss_pred CcEEEeecCCCCCCCCCCCCCCCceEeecCCcc--hhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCC
Q 037604 73 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSK--VEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVC 149 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~--i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~ 149 (540)
..|...+.++.+..++.....+.|++|-+..|. +..+ -++.|..++.|++||+++|...+.+|..+ .+.+
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~i-------s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEI-------SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhc-------CHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 455566666655555555555556666555554 2221 11224455566666666555555555555 4555
Q ss_pred CcEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCC
Q 037604 150 PVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGC 226 (540)
Q Consensus 150 L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 226 (540)
||+|+++ ++.+..+|.+++++..|.+|++..+.....+|.....+.+|++|.+...
T Consensus 597 LryL~L~---------------------~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 597 LRYLDLS---------------------DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhccccc---------------------CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 5444444 4555667777888888888888876655555555566777777777653
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=5.4e-12 Score=135.85 Aligned_cols=248 Identities=25% Similarity=0.341 Sum_probs=172.5
Q ss_pred CCCeeEEEcccCCceeccccccCCCCCCEEEcccCcc-ccccc-hhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEE
Q 037604 168 SGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKR-LKRIS-TRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCI 245 (540)
Q Consensus 168 ~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 245 (540)
....+...+.++.+..++... ..++|++|-+.+|.. ...++ ..|..++.|++||+++|...+.+|..++.+.+|++|
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 345588888888888777654 445899999998863 33343 347889999999999999999999999999999999
Q ss_pred EcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCC---CCccccCCCCccEEEccCCCC
Q 037604 246 NLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQ---LPSSVADSNVLGILDFSRCKG 322 (540)
Q Consensus 246 ~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~---l~~~~~~l~~L~~L~l~~~~~ 322 (540)
+++++.+..+|.++.++..|.+|++..+.....+|.....+++|++|.+....... .-..+..+.+|+.+.+.....
T Consensus 601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred cccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 99999999999999999999999999887777777667779999999998765322 123345556666666544332
Q ss_pred CCcccccccCCCCCc----EEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccch-h-----ccC-CCCCCEEEecCCC
Q 037604 323 LESFPRSLLGLSSLV----ALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPA-S-----IKQ-LSQLSSLELNDCK 391 (540)
Q Consensus 323 ~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~-----l~~-l~~L~~L~l~~~~ 391 (540)
.+...+..++.|. .+.+.++.....+..+..+.+|+.|.+.+|.+.+... + ... ++++..+.+.+|.
T Consensus 681 --~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~ 758 (889)
T KOG4658|consen 681 --LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCH 758 (889)
T ss_pred --HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccc
Confidence 1111222333333 3333334444456667778888888888888653321 1 111 4455556666665
Q ss_pred CCCcCC--CCCCCccEEEecCCCCCCcCC
Q 037604 392 MLQSLP--ELPLCLKYLHLRDCKMLQSLP 418 (540)
Q Consensus 392 ~~~~~~--~~~~~L~~L~l~~~~~l~~~~ 418 (540)
...... ..+++|+.|++.+|...+.+.
T Consensus 759 ~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 759 MLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccchhhccCcccEEEEecccccccCC
Confidence 554443 245788888888887776554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=4.7e-13 Score=130.31 Aligned_cols=224 Identities=27% Similarity=0.384 Sum_probs=173.3
Q ss_pred EEcccCCceeccccc--cCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCC
Q 037604 174 LYLGCSAIEEVPSSI--ECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTA 251 (540)
Q Consensus 174 L~L~~~~l~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 251 (540)
|.|++..++.+|..- ..+..-...+++.|+ ..++|..++.+..|+.+.++.|.+ ..+|..++++..|.+++++.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccch
Confidence 344445555555332 224445566777776 457777788888888888887544 4578889999999999999999
Q ss_pred CcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCccccccc
Q 037604 252 ITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLL 331 (540)
Q Consensus 252 l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 331 (540)
+..+|..+..++ |+.|.+++|+ .+.+|..++..+.|..|+.+.|.+..+|..++.+.+|+.|.+..|... .+|+.+.
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~ 209 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC 209 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh
Confidence 999999888887 8888888754 556888888889999999999999999999999999999999998854 4666677
Q ss_pred CCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhc---cCCCCCCEEEecCCCCCCcCCCCCCCcc
Q 037604 332 GLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASI---KQLSQLSSLELNDCKMLQSLPELPLCLK 404 (540)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~L~ 404 (540)
.+ .|..||++.|++..+|-.|..|+.|++|-|.+|.++.-|..+ +...-.++|+..-|+ .+.-+.....++
T Consensus 210 ~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q-~~~a~~~~t~~R 283 (722)
T KOG0532|consen 210 SL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ-SGGALDLYTTLR 283 (722)
T ss_pred CC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc-ccCCcccccccC
Confidence 44 488999999999999999999999999999999999888665 344556888888885 443333333333
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.4e-10 Score=117.05 Aligned_cols=197 Identities=29% Similarity=0.438 Sum_probs=141.3
Q ss_pred EEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCC-CCCEEEcCCCCCcccCcccCCCCCCCeEccCCCc
Q 037604 196 VLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKME-HLKCINLDRTAITELPSSFENLTGLKGLSVSDCS 274 (540)
Q Consensus 196 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~ 274 (540)
.++...+........ +.....++.|++.++.+ ..++....... +|+.|++++|.+..+|..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchh-hhcccceeEEecCCccc-ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 456665544232222 44456777777777544 34555556664 7888888888888887777888888888888876
Q ss_pred CCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhc
Q 037604 275 KLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIA 354 (540)
Q Consensus 275 ~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 354 (540)
+.. +|...+..+.|+.|++++|.+..+|........|+++.+++|... ..+..+..+..+..+.+.+|++...+..++
T Consensus 175 l~~-l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 175 LSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred hhh-hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhc
Confidence 554 444444678888888888888888877666677888888888522 234456677778888888888877777788
Q ss_pred CCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCCcCC
Q 037604 355 RLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLP 397 (540)
Q Consensus 355 ~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 397 (540)
.+++++.|++++|.++.++. ++.+.+++.|+++++......+
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 88888888888888888876 7778888888888887666554
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.8e-11 Score=115.79 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=52.1
Q ss_pred CCCCcEEEccCCCCCC--CCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCC--hhhcCCCCCcE
Q 037604 286 LESLHHMSAFGSAISQ--LPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIP--QEIARLSSLID 361 (540)
Q Consensus 286 l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~l~~L~~ 361 (540)
++.|+.|.++.|.++. +...+..+++|+.|++..|...........-+..|++|+|++|++.+.+ ...+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 3445555555555441 1222333455555555555322211112223445566666666655543 33455666666
Q ss_pred EEecCCCCcc--cchh-----ccCCCCCCEEEecCCCC
Q 037604 362 LHIGGNNFQS--LPAS-----IKQLSQLSSLELNDCKM 392 (540)
Q Consensus 362 L~l~~~~l~~--lp~~-----l~~l~~L~~L~l~~~~~ 392 (540)
|+++.|.+.+ +|+. ...+++|++|++..|++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 6666666552 2322 23456666666666654
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=1e-11 Score=114.41 Aligned_cols=186 Identities=17% Similarity=0.186 Sum_probs=89.8
Q ss_pred ccCCCCCCEEEcccCccccccch----hcCCCCCCcEEeccCCcCCCcCc-------------hhhhCCCCCCEEEcCCC
Q 037604 188 IECLTDLEVLDLMYCKRLKRIST----RFCKLRSLVDLCLNGCLNLERFP-------------EILEKMEHLKCINLDRT 250 (540)
Q Consensus 188 ~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~-------------~~l~~l~~L~~L~l~~~ 250 (540)
+..+++|++++||+|-+...-+. -+..+..|++|.+.+|.+...-. ...++-+.|+++....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 33445666666666654332222 23456677777777665432111 12234556777777766
Q ss_pred CCcccC-----cccCCCCCCCeEccCCCcCCCc----CCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCC
Q 037604 251 AITELP-----SSFENLTGLKGLSVSDCSKLDK----LPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCK 321 (540)
Q Consensus 251 ~l~~l~-----~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~ 321 (540)
++...+ ..+...+.|+.+.+..|.+-.. +...+..+++|+.|++.+|.++.--.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs----------------- 230 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS----------------- 230 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH-----------------
Confidence 665322 2344555666666655543211 11234445555555555554442100
Q ss_pred CCCcccccccCCCCCcEEeccCCCCCC-----CChhh-cCCCCCcEEEecCCCCc-----ccchhccCCCCCCEEEecCC
Q 037604 322 GLESFPRSLLGLSSLVALHIRNFAVME-----IPQEI-ARLSSLIDLHIGGNNFQ-----SLPASIKQLSQLSSLELNDC 390 (540)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~-~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~ 390 (540)
..+...+..+++|+.+++++|.+.+ +...+ ...|+|+.+.+.+|.++ .+-.++...|.|+.|++++|
T Consensus 231 --~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 231 --VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred --HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 0112233444555555555555444 11111 22556666666666654 22223444566666666666
Q ss_pred CC
Q 037604 391 KM 392 (540)
Q Consensus 391 ~~ 392 (540)
.+
T Consensus 309 ~l 310 (382)
T KOG1909|consen 309 RL 310 (382)
T ss_pred cc
Confidence 54
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=7.8e-10 Score=111.60 Aligned_cols=177 Identities=25% Similarity=0.349 Sum_probs=118.8
Q ss_pred CeeEEEcccCCceeccccccCCC-CCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcC
Q 037604 170 KITRLYLGCSAIEEVPSSIECLT-DLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLD 248 (540)
Q Consensus 170 ~l~~L~L~~~~l~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 248 (540)
.++.|++.++.++.++....... +|+.|++++|.+ ..+|..+..+++|+.|++++|.+. .++...+..+.|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence 45666777777777776666664 777777777653 344444667777777777776543 344444467777777777
Q ss_pred CCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccc
Q 037604 249 RTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPR 328 (540)
Q Consensus 249 ~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 328 (540)
+|.+..+|........|+++.+++|.... .+..+..+.++..+.+.+|.+..++..++.+++++.|++++|.+.....
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~- 272 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS- 272 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-
Confidence 77777777765566667777777764322 3344666677777777777777666777777777888887777554332
Q ss_pred cccCCCCCcEEeccCCCCCCCCh
Q 037604 329 SLLGLSSLVALHIRNFAVMEIPQ 351 (540)
Q Consensus 329 ~l~~~~~L~~L~l~~~~~~~~~~ 351 (540)
++...+++.|+++++.+...+.
T Consensus 273 -~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -ccccCccCEEeccCccccccch
Confidence 6677778888888777766443
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.1e-10 Score=110.60 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=55.4
Q ss_pred ccCCCCCCEEEcccCcccccc--chhcCCCCCCcEEeccCCcCCCcCchh-hhCCCCCCEEEcCCCCCc--ccCcccCCC
Q 037604 188 IECLTDLEVLDLMYCKRLKRI--STRFCKLRSLVDLCLNGCLNLERFPEI-LEKMEHLKCINLDRTAIT--ELPSSFENL 262 (540)
Q Consensus 188 ~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~--~l~~~~~~l 262 (540)
...+++++.|+++.|-+..-. ......+++|+.|+++.|......... -..+++|+.|.++.|.++ .+-.....+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 344555555555554322211 111234555555555554433211111 123445555555555544 222223344
Q ss_pred CCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCC--ccccCCCCccEEEccCCC
Q 037604 263 TGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLP--SSVADSNVLGILDFSRCK 321 (540)
Q Consensus 263 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~--~~~~~l~~L~~L~l~~~~ 321 (540)
|+|+.|++..|.....-......+..|+.|++++|.+-.++ ...+.++.|..|+++.|.
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence 55555555554322221122223344555555555444443 223344444444444443
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.95 E-value=1.5e-10 Score=106.71 Aligned_cols=177 Identities=14% Similarity=0.182 Sum_probs=123.9
Q ss_pred hCCCCCCEEEcCCCCCc-c----cCcccCCCCCCCeEccCCCcCCCc-------------CCCCCCCCCCCcEEEccCCC
Q 037604 237 EKMEHLKCINLDRTAIT-E----LPSSFENLTGLKGLSVSDCSKLDK-------------LPDNIGNLESLHHMSAFGSA 298 (540)
Q Consensus 237 ~~l~~L~~L~l~~~~l~-~----l~~~~~~l~~L~~L~l~~~~~~~~-------------l~~~~~~l~~L~~L~l~~~~ 298 (540)
..+++|++++++.|-+. . +-.-+.+++.|++|.+.+|.+-.. .......-+.|+++...+|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 34456666666666554 1 112245566777777777654211 11223456789999999998
Q ss_pred CCCCC-----ccccCCCCccEEEccCCCCCCc----ccccccCCCCCcEEeccCCCCCC-----CChhhcCCCCCcEEEe
Q 037604 299 ISQLP-----SSVADSNVLGILDFSRCKGLES----FPRSLLGLSSLVALHIRNFAVME-----IPQEIARLSSLIDLHI 364 (540)
Q Consensus 299 l~~l~-----~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l 364 (540)
+...+ ..+...+.|+.+.+..|.+... +...+..+++|+.|++.+|.++. +...+..+++|+.+++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 87653 3466778999999998875432 33457889999999999999876 4556778899999999
Q ss_pred cCCCCc-----ccchhc-cCCCCCCEEEecCCCCCCcCC-------CCCCCccEEEecCCCC
Q 037604 365 GGNNFQ-----SLPASI-KQLSQLSSLELNDCKMLQSLP-------ELPLCLKYLHLRDCKM 413 (540)
Q Consensus 365 ~~~~l~-----~lp~~l-~~l~~L~~L~l~~~~~~~~~~-------~~~~~L~~L~l~~~~~ 413 (540)
++|.+. .+...+ ...|+|+.|.+.+|.+...-. ..-+.|..|.+++|..
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999986 222333 457999999999998754221 1248899999999985
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=8.1e-10 Score=95.58 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=5.4
Q ss_pred cCCCCCcEEEecCCCCc
Q 037604 354 ARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 354 ~~l~~L~~L~l~~~~l~ 370 (540)
..+++|+.|++.+|.++
T Consensus 110 ~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 110 SSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp GG-TT--EEE-TT-GGG
T ss_pred HcCCCcceeeccCCccc
Confidence 34444444444444443
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=4.7e-11 Score=116.64 Aligned_cols=191 Identities=26% Similarity=0.386 Sum_probs=159.5
Q ss_pred CCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEcc
Q 037604 216 RSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAF 295 (540)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 295 (540)
.--...+++.|.+ ..+|..+..+..|+.+.+..|.+..+|..+.++..|.+++++.|.+ ..+|..+..++ |+.|-++
T Consensus 75 tdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 75 TDTVFADLSRNRF-SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred cchhhhhcccccc-ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEe
Confidence 3344567887654 4578888888889999999999999999999999999999999765 45677777776 8999999
Q ss_pred CCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchh
Q 037604 296 GSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPAS 375 (540)
Q Consensus 296 ~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 375 (540)
+|+++.+|..++....|..|+.+.|.+ ..+|..++.+.+|+.|.+..|++..+|+.+..+ .|..||++.|++..+|..
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVD 229 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchh
Confidence 999999999999889999999999985 446777899999999999999999999998855 589999999999999999
Q ss_pred ccCCCCCCEEEecCCCCCCcCCC-C-----CCCccEEEecCCC
Q 037604 376 IKQLSQLSSLELNDCKMLQSLPE-L-----PLCLKYLHLRDCK 412 (540)
Q Consensus 376 l~~l~~L~~L~l~~~~~~~~~~~-~-----~~~L~~L~l~~~~ 412 (540)
|..|..|++|-|.+|++. +-|. . .-=-|+|++.-|+
T Consensus 230 fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 999999999999999854 3332 1 1234777777774
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=1.2e-10 Score=105.10 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=71.4
Q ss_pred CCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEecc
Q 037604 263 TGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIR 342 (540)
Q Consensus 263 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 342 (540)
..|+.+++++|.+. .+.....-.|.++.|++++|.+..+.. +..+++|+.||+++|.... +..+-..+.++++|.++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence 44555555554332 223334444555555555555554433 4555556666666655322 11222345566666776
Q ss_pred CCCCCCCChhhcCCCCCcEEEecCCCCcccc--hhccCCCCCCEEEecCCCCCC
Q 037604 343 NFAVMEIPQEIARLSSLIDLHIGGNNFQSLP--ASIKQLSQLSSLELNDCKMLQ 394 (540)
Q Consensus 343 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~ 394 (540)
+|.+.++ ..++.+-+|..||+++|++..+. ..++++|.|+.+.+.+|++..
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 6666554 23556667777777777776443 246777777777777777543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=1.2e-09 Score=94.42 Aligned_cols=120 Identities=23% Similarity=0.308 Sum_probs=45.1
Q ss_pred CCCCcEEEccCCCCCCCCcccc-CCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhh-cCCCCCcEEE
Q 037604 286 LESLHHMSAFGSAISQLPSSVA-DSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEI-ARLSSLIDLH 363 (540)
Q Consensus 286 l~~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~ 363 (540)
..++++|++.+|.++.+.. ++ .+.+|+.|++++|.+... +.+..++.|++|++++|.++++...+ ..+|+|++|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3455666666666665532 33 356667777777765442 24667788889999999988876655 3688999999
Q ss_pred ecCCCCcccc--hhccCCCCCCEEEecCCCCCCcCCC-------CCCCccEEEec
Q 037604 364 IGGNNFQSLP--ASIKQLSQLSSLELNDCKMLQSLPE-------LPLCLKYLHLR 409 (540)
Q Consensus 364 l~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~-------~~~~L~~L~l~ 409 (540)
+++|++..+. ..+..+++|+.|++.+|+.... +. ..|+|+.||-.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 9999887543 3467889999999999986543 21 23777777643
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=6.6e-10 Score=100.31 Aligned_cols=201 Identities=19% Similarity=0.143 Sum_probs=110.5
Q ss_pred cCCCCCccccCcEEEeecCCCCCCCCCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCC-CCCCcc
Q 037604 63 LPNGLDYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEG-CKSLRS 140 (540)
Q Consensus 63 ~~~~~~~l~~~L~~L~l~~~~l~~l~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~-~~~~~~ 140 (540)
+|-.+..+ ++|+.+.++.|.-..|-... .-+.|+++.+.+..++.. +.+--...+....-.. ....|.
T Consensus 206 l~f~l~~f-~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~---------~~l~pe~~~~D~~~~E~~t~~G~ 275 (490)
T KOG1259|consen 206 LSFNLNAF-RNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDV---------PSLLPETILADPSGSEPSTSNGS 275 (490)
T ss_pred cccchHHh-hhhheeeeeccchhheeceeecCchhheeeeeccccccc---------ccccchhhhcCccCCCCCccCCc
Confidence 33344444 57777777777655554433 445677777766555421 1111111111111110 011122
Q ss_pred cCCCC-ccCCCcEEEccCCcCcc--ccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCC
Q 037604 141 FPSNL-HFVCPVTIDFSYCVNLI--EFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRS 217 (540)
Q Consensus 141 ~~~~~-~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 217 (540)
+-..+ ..+.|+++|+++|.+.. +-....+.++.|+++.|.+..+.. +..+++|+.||+++|... .+..+-..+-+
T Consensus 276 ~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 276 ALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred eEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 22222 44556666666665432 222345556677777777766644 667777777777776543 33333344667
Q ss_pred CcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccC--cccCCCCCCCeEccCCCcCCC
Q 037604 218 LVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELP--SSFENLTGLKGLSVSDCSKLD 277 (540)
Q Consensus 218 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~--~~~~~l~~L~~L~l~~~~~~~ 277 (540)
++.|.+++|.+. .+ ..++++-+|..||+++|++..+. ..+++++-|+.+.+.+|++.+
T Consensus 354 IKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 354 IKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred EeeeehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 777777775432 22 34566777777888888777443 357788888888888776554
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.76 E-value=3e-08 Score=96.24 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=13.7
Q ss_pred cccccccccccccccccCCCCCccccccch
Q 037604 442 PLCLQELDATNCNRLQSLAEIPSCLQELDA 471 (540)
Q Consensus 442 ~~~L~~L~i~~c~~l~~~~~~~~~l~~L~~ 471 (540)
|++|++|.+.+|..+..-+.+|.+++.|..
T Consensus 155 PsSLk~L~Is~c~~i~LP~~LP~SLk~L~l 184 (426)
T PRK15386 155 SPSLKTLSLTGCSNIILPEKLPESLQSITL 184 (426)
T ss_pred CCcccEEEecCCCcccCcccccccCcEEEe
Confidence 344555555555444332334444444443
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.59 E-value=3.9e-07 Score=88.67 Aligned_cols=148 Identities=26% Similarity=0.398 Sum_probs=71.4
Q ss_pred CCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCC-CCCCCChhhcCCCCCcEEEec
Q 037604 287 ESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNF-AVMEIPQEIARLSSLIDLHIG 365 (540)
Q Consensus 287 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~ 365 (540)
.+++.|++++|.++.+|. -..+|++|.+++|.....+|..+ .++|++|++++| .+..+|. +|+.|++.
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeC
Confidence 445555555555555541 12346666666655555444433 245666666665 3333442 45556665
Q ss_pred CCCCc---ccchhccCCCCCCEEEecCCCCC--CcCC-CCCCCccEEEecCCCCCCcCCC-CCCCccEEeecCCCCC--C
Q 037604 366 GNNFQ---SLPASIKQLSQLSSLELNDCKML--QSLP-ELPLCLKYLHLRDCKMLQSLPA-LPLCLESLDLRDCNML--R 436 (540)
Q Consensus 366 ~~~l~---~lp~~l~~l~~L~~L~l~~~~~~--~~~~-~~~~~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~~l--~ 436 (540)
++... .+| ++|+.|.+.++... ..+| .+|++|++|++++|.... +|. .+.+|+.|+++.+... .
T Consensus 121 ~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~n~~~sLe 193 (426)
T PRK15386 121 GSATDSIKNVP------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLPESLQSITLHIEQKTTWN 193 (426)
T ss_pred CCCCcccccCc------chHhheeccccccccccccccccCCcccEEEecCCCccc-CcccccccCcEEEeccccccccc
Confidence 54432 333 24555555432211 1222 244667777777666443 232 3345667776654211 0
Q ss_pred -CCCCccccccccccccc
Q 037604 437 -SLPELPLCLQELDATNC 453 (540)
Q Consensus 437 -~~~~~~~~L~~L~i~~c 453 (540)
.....|.++ .|.+.+|
T Consensus 194 I~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 194 ISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred Cccccccccc-Eechhhh
Confidence 111233455 5666665
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.57 E-value=1.8e-07 Score=99.14 Aligned_cols=87 Identities=24% Similarity=0.369 Sum_probs=47.1
Q ss_pred ccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCCCc-ccchhccCCCCCCEEEecC
Q 037604 312 LGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQ-SLPASIKQLSQLSSLELND 389 (540)
Q Consensus 312 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~ 389 (540)
++.|++++|.+.+.+|..++.+++|+.|++++|.+.+ +|..++.+++|+.|++++|+++ .+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4445555555555555555555555555555555543 5555555555555555555554 4555555555555555555
Q ss_pred CCCCCcCCC
Q 037604 390 CKMLQSLPE 398 (540)
Q Consensus 390 ~~~~~~~~~ 398 (540)
|.+.+.+|.
T Consensus 500 N~l~g~iP~ 508 (623)
T PLN03150 500 NSLSGRVPA 508 (623)
T ss_pred CcccccCCh
Confidence 555555543
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=1.8e-07 Score=99.14 Aligned_cols=109 Identities=26% Similarity=0.383 Sum_probs=93.3
Q ss_pred CCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCc-ccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEcc
Q 037604 217 SLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAIT-ELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAF 295 (540)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~ 295 (540)
.++.|++++|.+.+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3788999999888899999999999999999999987 788889999999999999999999999999999999999999
Q ss_pred CCCCCC-CCccccCC-CCccEEEccCCCCCCc
Q 037604 296 GSAISQ-LPSSVADS-NVLGILDFSRCKGLES 325 (540)
Q Consensus 296 ~~~l~~-l~~~~~~l-~~L~~L~l~~~~~~~~ 325 (540)
+|.+++ +|..++.. .++..+++.+|.....
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 999884 57766653 4667888888875443
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=1.2e-08 Score=103.05 Aligned_cols=219 Identities=21% Similarity=0.173 Sum_probs=104.9
Q ss_pred CCccccCcEEEeecCCCCCCCCC-CCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC
Q 037604 67 LDYLPEKLRYLHWDTYPLRILPS-NFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL 145 (540)
Q Consensus 67 ~~~l~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~ 145 (540)
+..+ .+|..|++.+|.+..+.. .-.+++|++|++++|.|+++ ..+..++.|+.|++++|.+.. +...-
T Consensus 91 l~~~-~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i---------~~l~~l~~L~~L~l~~N~i~~-~~~~~ 159 (414)
T KOG0531|consen 91 LSKL-KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL---------EGLSTLTLLKELNLSGNLISD-ISGLE 159 (414)
T ss_pred cccc-cceeeeeccccchhhcccchhhhhcchheeccccccccc---------cchhhccchhhheeccCcchh-ccCCc
Confidence 4444 477777777777777766 34677777777777777754 335556667777777655432 22111
Q ss_pred ccCCCcEEEccCCcCccccCCCCCCeeEEEcccCCceecccc-ccCCCCCCEEEcccCccccccchhcCCCCCCcEEecc
Q 037604 146 HFVCPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSS-IECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLN 224 (540)
Q Consensus 146 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 224 (540)
.++.|+.+++++|.+. .+... ...+.+++.+.+.+|.+...- .+..+..+..+++.
T Consensus 160 ~l~~L~~l~l~~n~i~---------------------~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~ 216 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIV---------------------DIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLL 216 (414)
T ss_pred cchhhhcccCCcchhh---------------------hhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcc
Confidence 3555555555555443 33321 234455555555554432211 11222222223333
Q ss_pred CCcCCCcCchhhhCCC--CCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC
Q 037604 225 GCLNLERFPEILEKME--HLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL 302 (540)
Q Consensus 225 ~~~~~~~~~~~l~~l~--~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l 302 (540)
.+.+...- .+..+. +|+.+++++|.+...+..+..++.+..+++.++.....- .+...+.+..+....+.+...
T Consensus 217 ~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 292 (414)
T KOG0531|consen 217 DNKISKLE--GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALS 292 (414)
T ss_pred cccceecc--CcccchhHHHHHHhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcch
Confidence 33222111 111111 255666666666655445555666666666654433221 122233333444444433311
Q ss_pred ----Cc-cccCCCCccEEEccCCCCC
Q 037604 303 ----PS-SVADSNVLGILDFSRCKGL 323 (540)
Q Consensus 303 ----~~-~~~~l~~L~~L~l~~~~~~ 323 (540)
.. .....+.++...+..+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 293 EAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred hhhhccccccccccccccccccCccc
Confidence 11 1333455555555555533
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.49 E-value=8.4e-08 Score=68.03 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=41.5
Q ss_pred CcEEEeecCCCCCCCCCCC--CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCC
Q 037604 73 KLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCK 136 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~~~~--~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~ 136 (540)
+|++|++++|.++.+|... .+++|++|++++|.++.+ -|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-------~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-------PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-------ETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-------CHHHHcCCCCCCEEeCcCCc
Confidence 6777888888777777643 677777777777777764 44567777777777777764
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4.6e-09 Score=94.90 Aligned_cols=179 Identities=17% Similarity=0.162 Sum_probs=95.5
Q ss_pred CCCEEEcccCccccc-cchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCC-CCccc--CcccCCCCCCCeE
Q 037604 193 DLEVLDLMYCKRLKR-ISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRT-AITEL--PSSFENLTGLKGL 268 (540)
Q Consensus 193 ~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~l--~~~~~~l~~L~~L 268 (540)
.|+++|+++..+... +..-+..|.+|+.|.+.+....+.+...+++-.+|+.|+++.+ .+++. .-.+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777776544322 2233566777777777777776666677777777888887763 45532 2235677778888
Q ss_pred ccCCCcCCCcCCCC-CC-CCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCC
Q 037604 269 SVSDCSKLDKLPDN-IG-NLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAV 346 (540)
Q Consensus 269 ~l~~~~~~~~l~~~-~~-~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (540)
++++|......-.. +. --++|+.|+++|+.-.- ....+..-...+++|.+||+++|..
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--------------------~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--------------------QKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--------------------hhhHHHHHHHhCCceeeeccccccc
Confidence 88877654432111 11 11345555555542110 0001111123455555555555533
Q ss_pred CC--CChhhcCCCCCcEEEecCCCC-c-ccchhccCCCCCCEEEecCCC
Q 037604 347 ME--IPQEIARLSSLIDLHIGGNNF-Q-SLPASIKQLSQLSSLELNDCK 391 (540)
Q Consensus 347 ~~--~~~~~~~l~~L~~L~l~~~~l-~-~lp~~l~~l~~L~~L~l~~~~ 391 (540)
.. ....+.+++.|++|.++.|.. . ..--.+...|+|.+|++.+|-
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 22 333455566666666666652 1 111134556667777766663
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=2.3e-07 Score=65.73 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=51.6
Q ss_pred CCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcC
Q 037604 94 KNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVN 160 (540)
Q Consensus 94 ~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~ 160 (540)
++|++|++++|+++.+ -+..|.++++|++|++++|.+...-+..+ .+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i-------~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI-------PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEE-------CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCcc-------CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999975 44678999999999999988876666677 999999999999863
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=2.5e-08 Score=100.81 Aligned_cols=175 Identities=25% Similarity=0.213 Sum_probs=72.5
Q ss_pred ccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCe
Q 037604 188 IECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKG 267 (540)
Q Consensus 188 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 267 (540)
+..+++|+.|++.+|.+.... ..+..+++|++|++++|.+... ..+..++.|+.|++.+|.+..+.. +..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 334444444444444332211 1133344444555544433321 123334445555555555554432 333455555
Q ss_pred EccCCCcCCCcCC-CCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCC--CCcEEeccCC
Q 037604 268 LSVSDCSKLDKLP-DNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLS--SLVALHIRNF 344 (540)
Q Consensus 268 L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~ 344 (540)
+++++|.+...-+ . ...+.+++.+++.+|.+..+. .+..+..+..+++..|.+...-+ +.... .|+.++++++
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGN 242 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccC
Confidence 5555544433222 1 234455555555555544331 11111222222333333222111 11111 2555555555
Q ss_pred CCCCCChhhcCCCCCcEEEecCCCCc
Q 037604 345 AVMEIPQEIARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 345 ~~~~~~~~~~~l~~L~~L~l~~~~l~ 370 (540)
.+...+..+..++.+..+++.++++.
T Consensus 243 ~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 243 RISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccccccccccccccccccchhhcccc
Confidence 55554444444555555555555544
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4e-09 Score=95.30 Aligned_cols=103 Identities=23% Similarity=0.282 Sum_probs=42.9
Q ss_pred cCCCCCcEEeccCCCCCC--CChhhcC-CCCCcEEEecCCC--Cc--ccchhccCCCCCCEEEecCCCCCCcC--C--CC
Q 037604 331 LGLSSLVALHIRNFAVME--IPQEIAR-LSSLIDLHIGGNN--FQ--SLPASIKQLSQLSSLELNDCKMLQSL--P--EL 399 (540)
Q Consensus 331 ~~~~~L~~L~l~~~~~~~--~~~~~~~-l~~L~~L~l~~~~--l~--~lp~~l~~l~~L~~L~l~~~~~~~~~--~--~~ 399 (540)
.+|+.|.+|+++.|.... +-..+.+ -++|+.|+++|+. +. .+..-...+|+|..|++++|..+..- . --
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 344555555555554433 1111111 1345555555543 11 22222244555555555555433320 0 01
Q ss_pred CCCccEEEecCCCCCCc--C--CCCCCCccEEeecCCC
Q 037604 400 PLCLKYLHLRDCKMLQS--L--PALPLCLESLDLRDCN 433 (540)
Q Consensus 400 ~~~L~~L~l~~~~~l~~--~--~~~~~~L~~L~l~~~~ 433 (540)
++.|++|.++.|..+-. + -...+.|.+|++.+|-
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 25555555555543310 0 0122346666666653
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.32 E-value=2.1e-08 Score=94.94 Aligned_cols=205 Identities=18% Similarity=0.220 Sum_probs=99.5
Q ss_pred CCCCCCEEEcccCccccc--cchhcCCCCCCcEEeccCCcCCCc--CchhhhCCCCCCEEEcCCC-CCccc--CcccCCC
Q 037604 190 CLTDLEVLDLMYCKRLKR--ISTRFCKLRSLVDLCLNGCLNLER--FPEILEKMEHLKCINLDRT-AITEL--PSSFENL 262 (540)
Q Consensus 190 ~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~l~~l--~~~~~~l 262 (540)
.+++|+++++++|..... +...+.++..++.+...||...+. +-..-+.+..+.++++..+ .++.. -..-..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 456666666666654322 112234455555555555543321 0011122333444443332 22211 1112334
Q ss_pred CCCCeEccCCCcCCCcCCC--CCCCCCCCcEEEccCCC-CCCC--CccccCCCCccEEEccCCCCCCc--ccccccCCCC
Q 037604 263 TGLKGLSVSDCSKLDKLPD--NIGNLESLHHMSAFGSA-ISQL--PSSVADSNVLGILDFSRCKGLES--FPRSLLGLSS 335 (540)
Q Consensus 263 ~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~-l~~l--~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~~~~ 335 (540)
..|+.|+.++|...+..+- --.+.++|+.+.+.++. ++.. ...-.+++.|+.+++..|....+ +...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 5566666666554332211 11244666666666653 2221 12223456666666666553222 2222345677
Q ss_pred CcEEeccCCCCCC------CChhhcCCCCCcEEEecCCCCc--ccchhccCCCCCCEEEecCCCCCC
Q 037604 336 LVALHIRNFAVME------IPQEIARLSSLIDLHIGGNNFQ--SLPASIKQLSQLSSLELNDCKMLQ 394 (540)
Q Consensus 336 L~~L~l~~~~~~~------~~~~~~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~ 394 (540)
|+.+.+++|.... +...-..+..|+.+.++++... ..-..+..+++|+.+++-+|+...
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 7777777664433 1222344667777777777643 333455667778777777776544
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.26 E-value=2.5e-08 Score=94.39 Aligned_cols=268 Identities=20% Similarity=0.250 Sum_probs=161.4
Q ss_pred CCCCEEEcccCccccccc--hhcCCCCCCcEEeccCCcCCCcC-chhh-hCCCCCCEEEcCC-CCCcc--cCcccCCCCC
Q 037604 192 TDLEVLDLMYCKRLKRIS--TRFCKLRSLVDLCLNGCLNLERF-PEIL-EKMEHLKCINLDR-TAITE--LPSSFENLTG 264 (540)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~-~~~l-~~l~~L~~L~l~~-~~l~~--l~~~~~~l~~ 264 (540)
..|+.|.+++|.-.+.-+ ..-.+++++++|.+.+|..+++. -..+ ..+++|+++++.. ..++. +-.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357788888876544322 33467888999988888755432 1222 4678888888877 34442 2222456788
Q ss_pred CCeEccCCCcCCCc--CCCCCCCCCCCcEEEccCCCCCCC---CccccCCCCccEEEccCCCCCCcccc--cccCCCCCc
Q 037604 265 LKGLSVSDCSKLDK--LPDNIGNLESLHHMSAFGSAISQL---PSSVADSNVLGILDFSRCKGLESFPR--SLLGLSSLV 337 (540)
Q Consensus 265 L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~~~~L~ 337 (540)
|+++++++|..... +......+..++.+...+|.-.+. ...-.....+..+++..|....+... .-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99999998875533 122234455566666665532221 11122334455666666654443321 123567788
Q ss_pred EEeccCCCCCC---CChhhcCCCCCcEEEecCCC-Ccccc--hhccCCCCCCEEEecCCCCCCcC-----CCCCCCccEE
Q 037604 338 ALHIRNFAVME---IPQEIARLSSLIDLHIGGNN-FQSLP--ASIKQLSQLSSLELNDCKMLQSL-----PELPLCLKYL 406 (540)
Q Consensus 338 ~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~-l~~lp--~~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~L~~L 406 (540)
.|+.+++...+ +-.--.+..+|+.+.+++|+ ++..- .--.+++.|+.+++.+|.....- ....+.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 88887775433 11122457788888888887 54321 12246778888888887654322 1233788888
Q ss_pred EecCCCCCCcC--------CCCCCCccEEeecCCCCCCCCC----CccccccccccccccccccC
Q 037604 407 HLRDCKMLQSL--------PALPLCLESLDLRDCNMLRSLP----ELPLCLQELDATNCNRLQSL 459 (540)
Q Consensus 407 ~l~~~~~l~~~--------~~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~i~~c~~l~~~ 459 (540)
.+++|...+.- ......++.+.+++|+.+..-. ...++|+.+++.+|...+.-
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 88888766543 2334458999999998765432 13446888888888776643
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=8.4e-08 Score=96.89 Aligned_cols=182 Identities=22% Similarity=0.228 Sum_probs=120.9
Q ss_pred cccccCCCCCCEEEcccCccccccchhcCCC-CCCcEEeccCCc---------CCCcCchhhhCCCCCCEEEcCCCCCcc
Q 037604 185 PSSIECLTDLEVLDLMYCKRLKRISTRFCKL-RSLVDLCLNGCL---------NLERFPEILEKMEHLKCINLDRTAITE 254 (540)
Q Consensus 185 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~---------~~~~~~~~l~~l~~L~~L~l~~~~l~~ 254 (540)
|-.+..+..|+.|.+++|.+... .++..+ .+|++|.-.+.- ..+++...+ ..-.|...++++|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHHh
Confidence 55677788999999999875431 112111 234444332210 011111111 12357777888888888
Q ss_pred cCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCC
Q 037604 255 LPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLS 334 (540)
Q Consensus 255 l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 334 (540)
+..++.-++.++.|++++|++...- .+..++.|++|+++.|.++.+|..-..-..|+.|.+++|..... ..+.++.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~Lk 254 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL--RGIENLK 254 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh--hhHHhhh
Confidence 8777888888999999998776643 57788899999999999888865433334588888888875443 3466788
Q ss_pred CCcEEeccCCCCCCC--ChhhcCCCCCcEEEecCCCCcccc
Q 037604 335 SLVALHIRNFAVMEI--PQEIARLSSLIDLHIGGNNFQSLP 373 (540)
Q Consensus 335 ~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp 373 (540)
+|+.||+++|-+.+. ...++.+..|+.|.|.||.+..-|
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 888889988877762 223566778888888888875333
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=1.6e-06 Score=78.81 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=39.5
Q ss_pred CcEEEeecCCCCCCCCCC--C--CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCC
Q 037604 73 KLRYLHWDTYPLRILPSN--F--KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSL 138 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~~~--~--~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~ 138 (540)
-+..|.+.++.+...... + .+.+++.+||.+|.|++ |.. +...+.+++.|++|+++.|...
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd-Wse----I~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD-WSE----IGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc-HHH----HHHHHhcCccceEeeccCCcCC
Confidence 455666777766544432 1 57788888888888877 543 2234557778888888766543
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=9.5e-06 Score=52.58 Aligned_cols=38 Identities=24% Similarity=0.496 Sum_probs=16.7
Q ss_pred CCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCccc
Q 037604 335 SLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSL 372 (540)
Q Consensus 335 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 372 (540)
+|++|++++|+++++|..++++++|+.|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34444444444444444444444444444444444433
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.95 E-value=2.6e-07 Score=93.42 Aligned_cols=174 Identities=18% Similarity=0.170 Sum_probs=113.2
Q ss_pred chhhhCCCCCCEEEcCCCCCcccCcccCCCC-CCCeEccCCCc---------CCCcCCCCCCCCCCCcEEEccCCCCCCC
Q 037604 233 PEILEKMEHLKCINLDRTAITELPSSFENLT-GLKGLSVSDCS---------KLDKLPDNIGNLESLHHMSAFGSAISQL 302 (540)
Q Consensus 233 ~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~-~L~~L~l~~~~---------~~~~l~~~~~~l~~L~~L~l~~~~l~~l 302 (540)
|-.+....+|++|.+.++.+...- ++..+. .|++|.-.+.- -.+++...+ ....|...+++.|.+..+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLVLM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHHhH
Confidence 556777888888888888776421 121111 23333222100 011111111 123566777778887777
Q ss_pred CccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChh-hcCCCCCcEEEecCCCCcccchhccCCCC
Q 037604 303 PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQE-IARLSSLIDLHIGGNNFQSLPASIKQLSQ 381 (540)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~lp~~l~~l~~ 381 (540)
...+.-++.++.|++++|++...- .+..++.|++||+++|.+..+|.. ...+ .|+.|.+++|.++.+- .+.++.+
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~-gie~Lks 255 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLR-GIENLKS 255 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhh-hHHhhhh
Confidence 777777888899999998866542 577888899999999988887652 2223 3888999998888765 5778888
Q ss_pred CCEEEecCCCCCCcCCC-----CCCCccEEEecCCCC
Q 037604 382 LSSLELNDCKMLQSLPE-----LPLCLKYLHLRDCKM 413 (540)
Q Consensus 382 L~~L~l~~~~~~~~~~~-----~~~~L~~L~l~~~~~ 413 (540)
|+.|++++|-+.+ ..+ ....|+.|.+.+|+.
T Consensus 256 L~~LDlsyNll~~-hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSE-HSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhccchhHhhhhc-chhhhHHHHHHHHHHHhhcCCcc
Confidence 9999999885433 222 226788888888874
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=1e-05 Score=69.66 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=71.4
Q ss_pred cccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCCCCC--CCCCceEeecCCcc
Q 037604 28 MSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSK 105 (540)
Q Consensus 28 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~~~~--~~~~L~~L~Ls~n~ 105 (540)
+.+...+++++|++ .. .+.+..+ ++|.+|.+++|+++.|.+.. .+++|..|.|.+|+
T Consensus 41 ~d~~d~iDLtdNdl-------------------~~-l~~lp~l-~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDL-------------------RK-LDNLPHL-PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccceecccccch-------------------hh-cccCCCc-cccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 44566777777775 22 2345566 48888888888888887775 57778888888888
Q ss_pred hhhhhccccCcCCCcccCCCCCCEEecCCCCCCccc---CCCC-ccCCCcEEEccCCc
Q 037604 106 VEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSF---PSNL-HFVCPVTIDFSYCV 159 (540)
Q Consensus 106 i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~---~~~~-~l~~L~~L~L~~~~ 159 (540)
|..+ |+ -+.+..+++|++|.+-+|.....- -..+ .+++|+.||+..-.
T Consensus 100 i~~l--~d----l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 100 IQEL--GD----LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhh--hh----cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8765 21 134667888888888887654321 1122 78888888887643
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=3e-05 Score=50.23 Aligned_cols=37 Identities=24% Similarity=0.501 Sum_probs=32.3
Q ss_pred CCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCC
Q 037604 357 SSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKML 393 (540)
Q Consensus 357 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 393 (540)
++|++|++++|+++++|..++.+++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5799999999999999988999999999999999754
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=1.3e-05 Score=73.04 Aligned_cols=184 Identities=17% Similarity=0.216 Sum_probs=105.6
Q ss_pred CCCCCcEEeccCCcCCC--cCchhhhCCCCCCEEEcCCCCCcccCccc-CCCCCCCeEccCCCcCCCc-CCCCCCCCCCC
Q 037604 214 KLRSLVDLCLNGCLNLE--RFPEILEKMEHLKCINLDRTAITELPSSF-ENLTGLKGLSVSDCSKLDK-LPDNIGNLESL 289 (540)
Q Consensus 214 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~l~~~~-~~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L 289 (540)
.+..++.+++.+|.+.. ++...+.+++.|+.|+++.|.+...-... ....+|+.|.+.+...... ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35667788888876553 23344567888888888888766322222 2445777777776544322 22334566777
Q ss_pred cEEEccCCCCCCC---CccccC-CCCccEEEccCCCCCC--cccccccCCCCCcEEeccCCCCCCC--ChhhcCCCCCcE
Q 037604 290 HHMSAFGSAISQL---PSSVAD-SNVLGILDFSRCKGLE--SFPRSLLGLSSLVALHIRNFAVMEI--PQEIARLSSLID 361 (540)
Q Consensus 290 ~~L~l~~~~l~~l---~~~~~~-l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~l~~L~~ 361 (540)
++|+++.|.+..+ ...... -+.++++....|.... ..-..-.-+|++..+.+..|.+.+. ......+|.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 7777777754432 001111 1234444444443110 0000012356777777777776662 234455677778
Q ss_pred EEecCCCCcccc--hhccCCCCCCEEEecCCCCCCcCC
Q 037604 362 LHIGGNNFQSLP--ASIKQLSQLSSLELNDCKMLQSLP 397 (540)
Q Consensus 362 L~l~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~~ 397 (540)
|+++.+++.++. ..+..++.|..|.++++++...+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 888888877443 356778888888888887766553
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=2.5e-05 Score=82.90 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=72.0
Q ss_pred CCCCEEecCCCCCC-cccCCCC--ccCCCcEEEccCCcCc----cccCCCCCCeeEEEcccCCceeccccccCCCCCCEE
Q 037604 125 KYLSMLNFEGCKSL-RSFPSNL--HFVCPVTIDFSYCVNL----IEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVL 197 (540)
Q Consensus 125 ~~L~~L~L~~~~~~-~~~~~~~--~l~~L~~L~L~~~~~~----~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L 197 (540)
.+|++|+++|.... ..+|..+ .+|.|+.|.+++-.+. ..+-..+++|..||+++++++.+ .+++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 57888888775332 3344444 6777888777763321 22334566666667766666665 456667777777
Q ss_pred EcccCcccc-ccchhcCCCCCCcEEeccCCcCCCcC--c----hhhhCCCCCCEEEcCCCCCc
Q 037604 198 DLMYCKRLK-RISTRFCKLRSLVDLCLNGCLNLERF--P----EILEKMEHLKCINLDRTAIT 253 (540)
Q Consensus 198 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~--~----~~l~~l~~L~~L~l~~~~l~ 253 (540)
.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+++|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 666533322 11123555677777777764333221 1 11123666667776666655
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=5.7e-06 Score=66.55 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCC
Q 037604 335 SLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDC 390 (540)
Q Consensus 335 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~ 390 (540)
.++.+++++|.+.++|..+..++.|+.++++.|.+...|..+..+.++-.|+..+|
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 34444444444444444444444444444444444444443333334444443333
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.53 E-value=3.7e-05 Score=69.24 Aligned_cols=80 Identities=20% Similarity=0.156 Sum_probs=40.7
Q ss_pred CCCcEEeccCCCCCC------CChhhcCCCCCcEEEecCCCCc-----ccchhccCCCCCCEEEecCCCCCCcCC-----
Q 037604 334 SSLVALHIRNFAVME------IPQEIARLSSLIDLHIGGNNFQ-----SLPASIKQLSQLSSLELNDCKMLQSLP----- 397 (540)
Q Consensus 334 ~~L~~L~l~~~~~~~------~~~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~~~~----- 397 (540)
..|+++.+..|.+.. +...+..+.+|+.|++..|-++ .+...+..++.|++|.+.+|-....-.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 355555555555443 1112344556666666666655 122334455666777777764432111
Q ss_pred ----CCCCCccEEEecCCCC
Q 037604 398 ----ELPLCLKYLHLRDCKM 413 (540)
Q Consensus 398 ----~~~~~L~~L~l~~~~~ 413 (540)
...|+|..|...+|..
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HhhhhcCCCccccccchhhh
Confidence 1225666666665543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=3.4e-05 Score=81.85 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=57.0
Q ss_pred CCCCEEEcccCccccc-cchhc-CCCCCCcEEeccCCcCCC-cCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeE
Q 037604 192 TDLEVLDLMYCKRLKR-ISTRF-CKLRSLVDLCLNGCLNLE-RFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGL 268 (540)
Q Consensus 192 ~~L~~L~l~~~~~~~~-~~~~l-~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L 268 (540)
.+|+.|++++...... .+..+ ..+|+|+.|.+.+-.... ++.....++++|..||+++++++.+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4677777776433211 11112 236777777776633322 1223345667777777777777666 456667777777
Q ss_pred ccCCCcCCC-cCCCCCCCCCCCcEEEccCCCC
Q 037604 269 SVSDCSKLD-KLPDNIGNLESLHHMSAFGSAI 299 (540)
Q Consensus 269 ~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~l 299 (540)
.+.+-.+.. ..-..+..+++|+.||++....
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 666533221 1111234555666666655433
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.50 E-value=0.0002 Score=61.83 Aligned_cols=85 Identities=11% Similarity=-0.033 Sum_probs=59.6
Q ss_pred cccCcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCC--cccCCCCcc
Q 037604 70 LPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSL--RSFPSNLHF 147 (540)
Q Consensus 70 l~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~--~~~~~~~~l 147 (540)
...+...+|+++|.+..++..-.++.|..|.|.+|+|+.+ -|.--..+++|++|.+.+|++. +++.+...+
T Consensus 40 ~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I-------~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRI-------DPDLDTFLPNLKTLILTNNSIQELGDLDPLASC 112 (233)
T ss_pred cccccceecccccchhhcccCCCccccceEEecCCcceee-------ccchhhhccccceEEecCcchhhhhhcchhccC
Confidence 3357788888888888777777788888888888888875 2222235677888888887553 334333377
Q ss_pred CCCcEEEccCCcCc
Q 037604 148 VCPVTIDFSYCVNL 161 (540)
Q Consensus 148 ~~L~~L~L~~~~~~ 161 (540)
++|++|.+-+|+..
T Consensus 113 p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVE 126 (233)
T ss_pred CccceeeecCCchh
Confidence 77888777776543
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.48 E-value=7.5e-05 Score=67.34 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=27.9
Q ss_pred CCCcEEeccCCCCCCCChh-----hcCCCCCcEEEecCCCCc--cc----chhccCCCCCCEEEecCCCC
Q 037604 334 SSLVALHIRNFAVMEIPQE-----IARLSSLIDLHIGGNNFQ--SL----PASIKQLSQLSSLELNDCKM 392 (540)
Q Consensus 334 ~~L~~L~l~~~~~~~~~~~-----~~~l~~L~~L~l~~~~l~--~l----p~~l~~l~~L~~L~l~~~~~ 392 (540)
|.|+...+..|++...+.. +..-..|+.+.+..|.|. .+ -..+..+.+|+.|++.+|.+
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 4455555555554442221 222245566666666553 01 11234455666666666544
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=5.4e-06 Score=66.66 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCCCcEEEccCCCCCCCCccccC-CCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEe
Q 037604 286 LESLHHMSAFGSAISQLPSSVAD-SNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHI 364 (540)
Q Consensus 286 l~~L~~L~l~~~~l~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 364 (540)
...|+..++++|.+..+|+.+.. .+.++.+++++|++ .++|..+..++.|+.|+++.|.+...|..+..+.++-.|+.
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 34455556666666666555433 34666666666663 34555566777777777777777776666666777777777
Q ss_pred cCCCCcccchh
Q 037604 365 GGNNFQSLPAS 375 (540)
Q Consensus 365 ~~~~l~~lp~~ 375 (540)
.+|....+|..
T Consensus 131 ~~na~~eid~d 141 (177)
T KOG4579|consen 131 PENARAEIDVD 141 (177)
T ss_pred CCCccccCcHH
Confidence 77766666543
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=9e-05 Score=77.02 Aligned_cols=129 Identities=24% Similarity=0.243 Sum_probs=64.8
Q ss_pred CCCCCeEccCCCcCCCc--CCCCCCCCCCCcEEEccCC-CC-CCC----CccccCCCCccEEEccCCCC-CCccccccc-
Q 037604 262 LTGLKGLSVSDCSKLDK--LPDNIGNLESLHHMSAFGS-AI-SQL----PSSVADSNVLGILDFSRCKG-LESFPRSLL- 331 (540)
Q Consensus 262 l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~-~l-~~l----~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~- 331 (540)
++.|+.+.+.+|..... +-.....++.|+.|+++++ .. ... ......+.+|+.++++.+.. ....-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555544333 1122344555566655542 11 111 11233346666777776663 222222222
Q ss_pred CCCCCcEEeccCCC-CCC--CChhhcCCCCCcEEEecCCCC-c--ccchhccCCCCCCEEEecCC
Q 037604 332 GLSSLVALHIRNFA-VME--IPQEIARLSSLIDLHIGGNNF-Q--SLPASIKQLSQLSSLELNDC 390 (540)
Q Consensus 332 ~~~~L~~L~l~~~~-~~~--~~~~~~~l~~L~~L~l~~~~l-~--~lp~~l~~l~~L~~L~l~~~ 390 (540)
.+++|++|.+.+|. +++ +......++.|++|++++|.. + .+......+++|+.|.+..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 36777777766665 444 334445677788888877763 2 23333444666666554443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=3e-05 Score=70.07 Aligned_cols=84 Identities=18% Similarity=0.006 Sum_probs=66.6
Q ss_pred cCcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC---ccC
Q 037604 72 EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL---HFV 148 (540)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~---~l~ 148 (540)
.+.+.|++.+|.+.+|.-...++.|++|.||-|.|+++ ..+..|++|+.|.|..|.+. ++.+.. +++
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL---------~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp 88 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL---------APLQRCTRLKELYLRKNCIE-SLDELEYLKNLP 88 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc---------hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence 47888999999999887777899999999999999975 55889999999999986543 333332 788
Q ss_pred CCcEEEccCCcCccccC
Q 037604 149 CPVTIDFSYCVNLIEFP 165 (540)
Q Consensus 149 ~L~~L~L~~~~~~~~~~ 165 (540)
+|+.|+|..|+-.+..+
T Consensus 89 sLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAG 105 (388)
T ss_pred hhhhHhhccCCcccccc
Confidence 89999998887655443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.0015 Score=59.07 Aligned_cols=14 Identities=43% Similarity=0.816 Sum_probs=6.3
Q ss_pred CCCCCCEEEecCCC
Q 037604 378 QLSQLSSLELNDCK 391 (540)
Q Consensus 378 ~l~~L~~L~l~~~~ 391 (540)
.+++|..|++.+|.
T Consensus 114 ~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 114 ELENLKSLDLFNCS 127 (260)
T ss_pred hhcchhhhhcccCC
Confidence 33444444444443
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.47 E-value=0.00029 Score=73.25 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=18.1
Q ss_pred CCCCCEEecCCCCCCcc--cCCCC-ccCCCcEEEccC
Q 037604 124 FKYLSMLNFEGCKSLRS--FPSNL-HFVCPVTIDFSY 157 (540)
Q Consensus 124 l~~L~~L~L~~~~~~~~--~~~~~-~l~~L~~L~L~~ 157 (540)
+++|+.|.+.+|..... +-... .++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 56666666666544443 21222 566666666655
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.65 E-value=0.039 Score=45.55 Aligned_cols=14 Identities=21% Similarity=0.327 Sum_probs=5.6
Q ss_pred cCCCCCCcEEeccC
Q 037604 212 FCKLRSLVDLCLNG 225 (540)
Q Consensus 212 l~~l~~L~~L~l~~ 225 (540)
|.++.+|+.+.+.+
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 44444455554443
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.64 E-value=0.0089 Score=54.18 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=38.6
Q ss_pred CCCCEEEcCCCCCcccCcccCCCCCCCeEccCCC--cCCCcCCCCCCCCCCCcEEEccCCCCCCC--CccccCCCCccEE
Q 037604 240 EHLKCINLDRTAITELPSSFENLTGLKGLSVSDC--SKLDKLPDNIGNLESLHHMSAFGSAISQL--PSSVADSNVLGIL 315 (540)
Q Consensus 240 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~--~~~~~l~~~~~~l~~L~~L~l~~~~l~~l--~~~~~~l~~L~~L 315 (540)
..|+.+++.+..++.+. .+-.+++|+.|.++.| +..+.++.-...+|+|+++++++|++..+ -..+..+.+|..|
T Consensus 43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 34444444443333221 1334556666666666 44444443344456666666666665542 1123333444444
Q ss_pred EccCCC
Q 037604 316 DFSRCK 321 (540)
Q Consensus 316 ~l~~~~ 321 (540)
++.+|.
T Consensus 122 dl~n~~ 127 (260)
T KOG2739|consen 122 DLFNCS 127 (260)
T ss_pred hcccCC
Confidence 444444
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.03 E-value=0.1 Score=42.99 Aligned_cols=106 Identities=13% Similarity=0.207 Sum_probs=55.5
Q ss_pred ccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCC-CCCccccCcEEEeecCCCCCCCCCCC--CCCC
Q 037604 19 NLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPN-GLDYLPEKLRYLHWDTYPLRILPSNF--KPKN 95 (540)
Q Consensus 19 ~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~L~l~~~~l~~l~~~~--~~~~ 95 (540)
.+...+|.++++|+.+.+.. .+ ..+++ .+... .+|+.+.+.++ +..++... .++.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~-------------------~~I~~~~F~~~-~~l~~i~~~~~-~~~i~~~~F~~~~~ 59 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TI-------------------KKIGENAFSNC-TSLKSINFPNN-LTSIGDNAFSNCKS 59 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T---------------------EE-TTTTTT--TT-SEEEESST-TSCE-TTTTTT-TT
T ss_pred EECHHHHhCCCCCCEEEECC-Ce-------------------eEeChhhcccc-ccccccccccc-ccccceeeeecccc
Confidence 45677888899999888864 33 34444 44444 47888888774 77776653 6667
Q ss_pred ceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC--ccCCCcEEEccC
Q 037604 96 LVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL--HFVCPVTIDFSY 157 (540)
Q Consensus 96 L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~--~l~~L~~L~L~~ 157 (540)
++.+.+.. .+..+ -...|..+++|+.+++..+ ...++... .+ +++.+.+..
T Consensus 60 l~~i~~~~-~~~~i-------~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 60 LESITFPN-NLKSI-------GDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -EEEEETS-TT-EE--------TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccc-ccccc-------ccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 88888865 44332 2235667888888888653 33333333 44 676666653
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.01 E-value=0.012 Score=31.56 Aligned_cols=19 Identities=42% Similarity=0.690 Sum_probs=11.2
Q ss_pred CcEEEecCCCCcccchhcc
Q 037604 359 LIDLHIGGNNFQSLPASIK 377 (540)
Q Consensus 359 L~~L~l~~~~l~~lp~~l~ 377 (540)
|++|++++|+++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5666666666666665443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.001 Score=60.39 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=74.4
Q ss_pred cccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCCCCCCCCCceEeecCCcchh
Q 037604 28 MSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVE 107 (540)
Q Consensus 28 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~ 107 (540)
+.+.+.|++-|+.+++ ..+ ..++| .|++|.|+-|.++++.+...+++|+.|.|..|.|.
T Consensus 18 l~~vkKLNcwg~~L~D-----------------Isi---c~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-----------------ISI---CEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHhhhhcccCCCccH-----------------HHH---HHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccc
Confidence 5677788887777642 222 23454 89999999999999999889999999999999998
Q ss_pred hhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC------ccCCCcEEE
Q 037604 108 QLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL------HFVCPVTID 154 (540)
Q Consensus 108 ~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~------~l~~L~~L~ 154 (540)
++.+ -.-+.++++|++|-|..|.-.+.-+... -+++|+.||
T Consensus 77 sldE------L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 77 SLDE------LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cHHH------HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7521 1235689999999999987766554433 366666664
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.20 E-value=0.036 Score=27.50 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=5.8
Q ss_pred CCcEEEecCCCCccc
Q 037604 358 SLIDLHIGGNNFQSL 372 (540)
Q Consensus 358 ~L~~L~l~~~~l~~l 372 (540)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344555555544443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.69 E-value=0.038 Score=27.42 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=8.0
Q ss_pred CcEEEeecCCCCCCCC
Q 037604 73 KLRYLHWDTYPLRILP 88 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~ 88 (540)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5667777777666554
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.63 E-value=0.026 Score=30.19 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=6.8
Q ss_pred CCEEEcCCCCCcccCc
Q 037604 242 LKCINLDRTAITELPS 257 (540)
Q Consensus 242 L~~L~l~~~~l~~l~~ 257 (540)
|++|++++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3444444444444443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.08 E-value=0.001 Score=67.64 Aligned_cols=82 Identities=23% Similarity=0.132 Sum_probs=41.8
Q ss_pred CCEEEcccCccccc----cchhcCCCCCCcEEeccCCcCCCcCc----hhhhCC-CCCCEEEcCCCCCc-----ccCccc
Q 037604 194 LEVLDLMYCKRLKR----ISTRFCKLRSLVDLCLNGCLNLERFP----EILEKM-EHLKCINLDRTAIT-----ELPSSF 259 (540)
Q Consensus 194 L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~l-~~L~~L~l~~~~l~-----~l~~~~ 259 (540)
+..|.+.+|.+... +...+....+|+.|++++|.+...-. ..+... ..+++|++..+.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56667777665433 22335566777777777766553211 112222 34455555555444 223334
Q ss_pred CCCCCCCeEccCCCcC
Q 037604 260 ENLTGLKGLSVSDCSK 275 (540)
Q Consensus 260 ~~l~~L~~L~l~~~~~ 275 (540)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4455566666655544
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.50 E-value=0.0074 Score=53.56 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=24.8
Q ss_pred CcEEEeecCCCCCCCCCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCC
Q 037604 73 KLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGC 135 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~ 135 (540)
.+..|+++.|.+.-+|.++ ....++.+++..|..+. .|.+++..++++++++.++
T Consensus 66 ~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~--------~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 66 RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ--------QPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh--------CCccccccCCcchhhhccC
Confidence 4444444444444444443 33444444444444443 4444444444444444443
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.33 E-value=0.0042 Score=63.27 Aligned_cols=178 Identities=22% Similarity=0.274 Sum_probs=94.0
Q ss_pred eeEEEcccCCce-----eccccccCCCCCCEEEcccCccccccc----hhcCCC-CCCcEEeccCCcCCCc----Cchhh
Q 037604 171 ITRLYLGCSAIE-----EVPSSIECLTDLEVLDLMYCKRLKRIS----TRFCKL-RSLVDLCLNGCLNLER----FPEIL 236 (540)
Q Consensus 171 l~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l-~~L~~L~l~~~~~~~~----~~~~l 236 (540)
+..+.+..|.+. .+...+...+.|..|++++|.+...-. ..+... ..+++|++..|..... +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 456666666665 334456677888888998887653211 122222 4567777777766543 44556
Q ss_pred hCCCCCCEEEcCCCCCc-----ccCcccC----CCCCCCeEccCCCcCCCc----CCCCCCCCCC-CcEEEccCCCCCCC
Q 037604 237 EKMEHLKCINLDRTAIT-----ELPSSFE----NLTGLKGLSVSDCSKLDK----LPDNIGNLES-LHHMSAFGSAISQL 302 (540)
Q Consensus 237 ~~l~~L~~L~l~~~~l~-----~l~~~~~----~l~~L~~L~l~~~~~~~~----l~~~~~~l~~-L~~L~l~~~~l~~l 302 (540)
.....++.++++.|.+. .++..+. ...++++|.+.+|..+.. +...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 66788888888888774 1222222 345666666666654421 1111222233 44455555555432
Q ss_pred -----CccccCC-CCccEEEccCCCCCCcc----cccccCCCCCcEEeccCCCCCC
Q 037604 303 -----PSSVADS-NVLGILDFSRCKGLESF----PRSLLGLSSLVALHIRNFAVME 348 (540)
Q Consensus 303 -----~~~~~~l-~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~ 348 (540)
.+.+..+ ..+++++++.|.+...- ...+..++.++++.+++|.+.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2222222 44455555555544322 2223344455555555555444
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.77 E-value=0.46 Score=26.43 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=12.4
Q ss_pred CCCcEEEecCCCCcccchh
Q 037604 357 SSLIDLHIGGNNFQSLPAS 375 (540)
Q Consensus 357 ~~L~~L~l~~~~l~~lp~~ 375 (540)
++|+.|++++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4666777777776666644
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.77 E-value=0.46 Score=26.43 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=12.4
Q ss_pred CCCcEEEecCCCCcccchh
Q 037604 357 SSLIDLHIGGNNFQSLPAS 375 (540)
Q Consensus 357 ~~L~~L~l~~~~l~~lp~~ 375 (540)
++|+.|++++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4666777777776666644
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.54 E-value=0.045 Score=48.80 Aligned_cols=52 Identities=10% Similarity=-0.081 Sum_probs=44.5
Q ss_pred cccCCCCCccccCcEEEeecCCCCCCCCCCC-CCCCceEeecCCcchhhhhccc
Q 037604 61 VQLPNGLDYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQLWEGE 113 (540)
Q Consensus 61 ~~~~~~~~~l~~~L~~L~l~~~~l~~l~~~~-~~~~L~~L~Ls~n~i~~l~~g~ 113 (540)
..+|+.+... ..++.++...|.....|..+ ..++++++++..|.+..-|.|.
T Consensus 78 ~~~~~d~~q~-~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~~~~~~~ 130 (326)
T KOG0473|consen 78 KFLPKDAKQQ-RETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFFRKLFGF 130 (326)
T ss_pred hhChhhHHHH-HHHHHHHhhccchhhCCccccccCCcchhhhccCcchHHHHhH
Confidence 4578888887 58999999999999999887 8999999999999987766654
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.88 E-value=0.16 Score=44.39 Aligned_cols=34 Identities=32% Similarity=0.387 Sum_probs=16.4
Q ss_pred CCCCcEEEecCCC-Cccc-chhccCCCCCCEEEecC
Q 037604 356 LSSLIDLHIGGNN-FQSL-PASIKQLSQLSSLELND 389 (540)
Q Consensus 356 l~~L~~L~l~~~~-l~~l-p~~l~~l~~L~~L~l~~ 389 (540)
.++|+.|++++|. |++- -.++..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 3455555555554 4421 23344555555555544
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.43 E-value=0.9 Score=25.21 Aligned_cols=20 Identities=20% Similarity=0.571 Sum_probs=13.7
Q ss_pred CCCCCEEEcCCCCCcccCcc
Q 037604 239 MEHLKCINLDRTAITELPSS 258 (540)
Q Consensus 239 l~~L~~L~l~~~~l~~l~~~ 258 (540)
+++|+.|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.43 E-value=0.9 Score=25.21 Aligned_cols=20 Identities=20% Similarity=0.571 Sum_probs=13.7
Q ss_pred CCCCCEEEcCCCCCcccCcc
Q 037604 239 MEHLKCINLDRTAITELPSS 258 (540)
Q Consensus 239 l~~L~~L~l~~~~l~~l~~~ 258 (540)
+++|+.|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.18 E-value=0.68 Score=25.76 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=13.6
Q ss_pred cCcEEEeecCCCCCCCCCC
Q 037604 72 EKLRYLHWDTYPLRILPSN 90 (540)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~ 90 (540)
.+|++|+.++|+++++|..
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 4677777777777777763
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.78 E-value=0.33 Score=42.52 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=56.4
Q ss_pred CCCCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCC-CC--ccCCCcEEEccCCcCc
Q 037604 86 ILPSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPS-NL--HFVCPVTIDFSYCVNL 161 (540)
Q Consensus 86 ~l~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~-~~--~l~~L~~L~L~~~~~~ 161 (540)
++|... .-..++.+|-++..|.. +|. +.+.+++.++.|.+.+|...++.-- .+ -.++|+.|++++|+.+
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~--eGl-----e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMY--EGL-----EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRI 164 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHH--HHH-----HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCee
Confidence 455442 34467888998888874 354 3377888888888888876554321 11 4567777777776544
Q ss_pred cccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEccc
Q 037604 162 IEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMY 201 (540)
Q Consensus 162 ~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~ 201 (540)
++. --..+..+++|+.|.+.+
T Consensus 165 T~~-------------------GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 165 TDG-------------------GLACLLKLKNLRRLHLYD 185 (221)
T ss_pred chh-------------------HHHHHHHhhhhHHHHhcC
Confidence 321 113466677777777765
No 86
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=79.64 E-value=1.9 Score=22.36 Aligned_cols=19 Identities=68% Similarity=1.198 Sum_probs=16.2
Q ss_pred CceEeecCCcchhhhhccc
Q 037604 95 NLVELNLRFSKVEQLWEGE 113 (540)
Q Consensus 95 ~L~~L~Ls~n~i~~l~~g~ 113 (540)
+|..|++.+++++.+|+|.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 4778999999999999885
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.16 E-value=1.5 Score=24.53 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=14.5
Q ss_pred cccCceeeeeccccccch
Q 037604 28 MSNMRLLKFYVPKFYGIE 45 (540)
Q Consensus 28 l~~L~~L~l~~n~l~~~~ 45 (540)
+++|+.|++++|.|..++
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 578999999999986443
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.69 E-value=2.8 Score=22.62 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=8.3
Q ss_pred CCceEeecCCcchhh
Q 037604 94 KNLVELNLRFSKVEQ 108 (540)
Q Consensus 94 ~~L~~L~Ls~n~i~~ 108 (540)
++|++|++++|.|+.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 456677777776653
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.56 E-value=8.1 Score=21.34 Aligned_cols=22 Identities=0% Similarity=-0.008 Sum_probs=18.1
Q ss_pred cCCeEeeeccccccchhHHHHH
Q 037604 493 LQPIYFGFINSLKLNGKANKKI 514 (540)
Q Consensus 493 ~~l~~l~~~~c~~l~~~~~~~~ 514 (540)
.+++.+++++|+.++..+...+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 3567789999999999887766
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.25 E-value=6.1 Score=40.38 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=29.0
Q ss_pred CCCCcEEeccCCCCCCC---ChhhcCCCCCcEEEecCC--CCcccchhcc--CCCCCCEEEecCCCCCCcC
Q 037604 333 LSSLVALHIRNFAVMEI---PQEIARLSSLIDLHIGGN--NFQSLPASIK--QLSQLSSLELNDCKMLQSL 396 (540)
Q Consensus 333 ~~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~--~l~~lp~~l~--~l~~L~~L~l~~~~~~~~~ 396 (540)
.+.+..+.+++|++..+ ..-....|.|+.|+|++| .+...+ ++. ....|++|-+.+|++.+.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccch
Confidence 34455555555555442 111233456666666666 222111 111 1234566666666655443
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.00 E-value=31 Score=34.77 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=29.6
Q ss_pred CcEEeccCCCCCCCCh----hhcCCCCCcEEEecCCCCccc-----chhccCCCCCCEEEecCC
Q 037604 336 LVALHIRNFAVMEIPQ----EIARLSSLIDLHIGGNNFQSL-----PASIKQLSQLSSLELNDC 390 (540)
Q Consensus 336 L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~~l~~l-----p~~l~~l~~L~~L~l~~~ 390 (540)
+..+.++.|....-+. ....-+.+..|++++|..... |.....-.+++.+..+.|
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n 478 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN 478 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC
Confidence 4556666666655222 234456788888888876633 223333334554444443
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=52.15 E-value=9.2 Score=21.66 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=9.6
Q ss_pred CCceEeecCCcchh
Q 037604 94 KNLVELNLRFSKVE 107 (540)
Q Consensus 94 ~~L~~L~Ls~n~i~ 107 (540)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777765
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.03 E-value=12 Score=38.32 Aligned_cols=67 Identities=13% Similarity=-0.040 Sum_probs=40.8
Q ss_pred CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCC-CcccCCCC--ccCCCcEEEccCCcCccc
Q 037604 92 KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKS-LRSFPSNL--HFVCPVTIDFSYCVNLIE 163 (540)
Q Consensus 92 ~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~-~~~~~~~~--~l~~L~~L~L~~~~~~~~ 163 (540)
+.+.+..++|++|++..+. + +...-...++|+.|+|++|.. ....++.- +...|++|.+.+|++.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld-~----~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLD-A----LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchh-h----hhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 5677888888888877641 1 223334667888888887621 12222211 556677788888776544
No 94
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=33.87 E-value=83 Score=19.97 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=19.0
Q ss_pred cccCcEEEeecCCCCCCCCCCCCCCCceEeecC
Q 037604 70 LPEKLRYLHWDTYPLRILPSNFKPKNLVELNLR 102 (540)
Q Consensus 70 l~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls 102 (540)
+|.++++|.+.++--..+....-..+|++|.+.
T Consensus 10 iP~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 10 IPSSLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred eCCCCeEEEECCccCccCCCCccCCCceEEEee
Confidence 456788888854433344433334566766654
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.77 E-value=60 Score=40.53 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=29.7
Q ss_pred ecCcccccccCchhhhccccCceeeeeccccc
Q 037604 11 DLSKIKGINLDPGTFTNMSNMRLLKFYVPKFY 42 (540)
Q Consensus 11 ~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~ 42 (540)
|+++|++..++++.|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999999999999999999999999774
Done!