Query 037604
Match_columns 540
No_of_seqs 506 out of 4272
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 03:36:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.1E-48 3.1E-52 418.7 26.9 505 9-528 104-765 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-45 5.4E-50 401.1 29.0 468 23-504 94-715 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.8E-41 6.1E-46 360.9 35.4 466 9-506 37-560 (606)
4 3t6q_A CD180 antigen; protein- 100.0 2.2E-41 7.5E-46 360.3 33.8 436 9-454 61-558 (606)
5 4eco_A Uncharacterized protein 100.0 1.3E-42 4.5E-47 369.7 21.1 424 7-435 83-600 (636)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-41 7.4E-46 360.3 29.1 417 9-459 36-536 (606)
7 4ecn_A Leucine-rich repeat pro 100.0 5.1E-41 1.8E-45 363.3 27.7 424 7-436 325-841 (876)
8 1ziw_A TOLL-like receptor 3; i 100.0 7.2E-39 2.5E-43 345.4 38.7 281 9-297 29-363 (680)
9 3vq2_A TLR4, TOLL-like recepto 100.0 8.7E-40 3E-44 347.9 28.2 413 9-454 60-556 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 3.5E-39 1.2E-43 340.9 27.2 412 9-453 32-528 (570)
11 1ziw_A TOLL-like receptor 3; i 100.0 7.7E-38 2.6E-42 337.4 35.7 441 9-459 53-599 (680)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-38 5.6E-43 349.4 29.4 432 9-452 28-556 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1E-38 3.5E-43 335.6 25.3 381 64-457 43-486 (549)
14 4eco_A Uncharacterized protein 100.0 4.2E-39 1.4E-43 342.7 20.2 334 117-455 198-599 (636)
15 3j0a_A TOLL-like receptor 5; m 100.0 4E-37 1.4E-41 338.4 34.4 373 7-413 6-463 (844)
16 2z63_A TOLL-like receptor 4, v 100.0 9E-38 3.1E-42 330.1 27.9 401 9-440 56-536 (570)
17 4ecn_A Leucine-rich repeat pro 100.0 9.9E-38 3.4E-42 337.7 27.3 393 29-455 323-839 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-38 6.5E-43 331.2 19.8 409 10-453 26-478 (520)
19 2z81_A CD282 antigen, TOLL-lik 100.0 8.8E-37 3E-41 320.9 22.0 416 9-454 30-508 (549)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-37 7.3E-42 323.3 17.0 411 9-458 4-458 (520)
21 1jl5_A Outer protein YOPM; leu 100.0 9.8E-36 3.4E-40 303.2 28.1 352 22-436 5-371 (454)
22 1jl5_A Outer protein YOPM; leu 100.0 5.4E-35 1.9E-39 297.8 29.7 364 64-469 5-382 (454)
23 3v47_A TOLL-like receptor 5B a 100.0 5.3E-34 1.8E-38 292.6 28.1 364 10-416 15-410 (455)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.7E-34 2E-38 299.9 27.6 373 10-416 57-512 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 1.2E-33 4.3E-38 289.8 26.7 355 77-440 15-413 (455)
26 1o6v_A Internalin A; bacterial 100.0 3.4E-33 1.2E-37 286.9 29.1 341 26-412 43-386 (466)
27 1o6v_A Internalin A; bacterial 100.0 6.4E-33 2.2E-37 284.9 29.2 342 4-394 47-389 (466)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.2E-33 1.8E-37 292.6 28.0 365 74-453 33-507 (562)
29 4g8a_A TOLL-like receptor 4; l 100.0 6.9E-33 2.4E-37 296.5 27.9 398 9-435 56-580 (635)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.5E-32 8.5E-37 278.4 23.7 349 20-440 33-392 (457)
31 4fmz_A Internalin; leucine ric 100.0 2.4E-31 8.1E-36 262.7 27.8 307 24-393 39-346 (347)
32 2id5_A Lingo-1, leucine rich r 100.0 3.9E-31 1.3E-35 272.7 29.0 311 75-393 14-333 (477)
33 4fmz_A Internalin; leucine ric 100.0 1.8E-30 6.2E-35 256.4 28.3 303 68-413 41-345 (347)
34 3bz5_A Internalin-J, INLJ; leu 100.0 6.2E-31 2.1E-35 268.1 23.5 336 9-421 46-394 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 1.9E-30 6.4E-35 260.4 26.5 301 73-412 46-350 (390)
36 2id5_A Lingo-1, leucine rich r 100.0 1.6E-30 5.5E-35 268.1 25.7 279 64-370 49-333 (477)
37 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-29 3.9E-34 271.5 31.1 379 9-414 80-580 (635)
38 3o6n_A APL1; leucine-rich repe 100.0 4.8E-30 1.6E-34 257.4 24.7 304 27-393 43-352 (390)
39 3oja_B Anopheles plasmodium-re 100.0 9.6E-30 3.3E-34 269.1 26.8 303 73-414 52-358 (597)
40 3oja_B Anopheles plasmodium-re 100.0 1.4E-29 4.7E-34 268.0 25.1 305 27-393 49-358 (597)
41 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-28 5E-33 240.9 25.6 285 72-391 33-331 (332)
42 1xku_A Decorin; proteoglycan, 100.0 3.2E-28 1.1E-32 238.4 27.4 286 72-391 31-330 (330)
43 1xku_A Decorin; proteoglycan, 100.0 2.3E-27 7.9E-32 232.2 27.1 282 95-412 32-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-27 4.4E-32 234.2 25.2 280 95-412 34-331 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.8E-31 6.3E-36 274.1 -4.9 342 28-393 2-411 (461)
46 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-28 4.9E-33 238.5 12.4 245 169-414 50-304 (313)
47 1ogq_A PGIP-2, polygalacturona 99.9 2.9E-28 9.8E-33 236.4 11.1 245 94-391 50-302 (313)
48 1z7x_W Ribonuclease inhibitor; 99.9 3.7E-30 1.3E-34 264.4 -4.0 345 71-434 2-410 (461)
49 4fcg_A Uncharacterized protein 99.9 8.2E-26 2.8E-30 220.4 19.2 219 169-390 81-311 (328)
50 4fcg_A Uncharacterized protein 99.9 7.2E-26 2.5E-30 220.8 18.7 227 73-344 82-311 (328)
51 2z66_A Variable lymphocyte rec 99.9 8.5E-26 2.9E-30 218.7 17.4 246 74-348 9-262 (306)
52 3g06_A SSPH2 (leucine-rich rep 99.9 1E-23 3.4E-28 221.2 27.8 262 72-397 40-301 (622)
53 1ozn_A Reticulon 4 receptor; N 99.9 6.2E-25 2.1E-29 210.3 16.9 220 173-394 15-239 (285)
54 2z80_A TOLL-like receptor 2, v 99.9 5.9E-25 2E-29 217.2 17.2 270 147-417 30-317 (353)
55 2z66_A Variable lymphocyte rec 99.9 2.7E-24 9.2E-29 208.1 20.7 223 173-397 11-240 (306)
56 3zyj_A Leucine-rich repeat-con 99.9 1.2E-23 4E-28 214.3 26.3 241 150-392 45-291 (440)
57 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-23 9.6E-28 217.8 29.0 244 62-370 54-297 (622)
58 3zyi_A Leucine-rich repeat-con 99.9 1.7E-23 5.8E-28 213.8 26.3 240 151-392 57-302 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 8.8E-24 3E-28 215.2 23.9 244 72-345 43-290 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 9.7E-24 3.3E-28 215.6 23.9 244 73-345 55-301 (452)
61 3ogk_B Coronatine-insensitive 99.9 1.8E-26 6.2E-31 244.6 3.3 383 25-431 108-547 (592)
62 2z80_A TOLL-like receptor 2, v 99.9 1.5E-24 5.2E-29 214.2 15.6 268 73-371 32-315 (353)
63 1ozn_A Reticulon 4 receptor; N 99.9 3.3E-24 1.1E-28 205.2 16.1 218 152-370 15-238 (285)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-25 4.8E-30 218.0 4.0 235 93-366 33-271 (317)
65 1wwl_A Monocyte differentiatio 99.9 2.5E-25 8.6E-30 215.7 4.7 201 190-394 93-310 (312)
66 3ogk_B Coronatine-insensitive 99.9 4E-26 1.4E-30 242.0 -1.1 393 20-435 64-526 (592)
67 3o53_A Protein LRIM1, AGAP0063 99.9 4.3E-24 1.5E-28 207.5 7.4 259 95-392 11-274 (317)
68 2z62_A TOLL-like receptor 4, v 99.9 4.4E-22 1.5E-26 189.4 20.1 215 178-394 16-238 (276)
69 3oja_A Leucine-rich immune mol 99.9 1.8E-23 6.1E-28 214.9 10.5 211 73-321 35-248 (487)
70 1wwl_A Monocyte differentiatio 99.9 4.3E-24 1.5E-28 207.1 4.5 237 192-435 43-309 (312)
71 2p1m_B Transport inhibitor res 99.9 9.9E-25 3.4E-29 231.3 -5.1 403 20-434 57-518 (594)
72 3oja_A Leucine-rich immune mol 99.9 9.2E-22 3.2E-26 202.1 15.9 211 172-393 37-250 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 9.9E-21 3.4E-25 180.1 19.9 132 191-323 99-237 (276)
74 1p9a_G Platelet glycoprotein I 99.9 1.9E-20 6.6E-25 178.9 21.9 174 217-392 32-207 (290)
75 2p1m_B Transport inhibitor res 99.9 6.6E-24 2.2E-28 225.0 -2.8 366 24-414 100-519 (594)
76 1p9a_G Platelet glycoprotein I 99.9 1.9E-20 6.7E-25 178.9 21.1 199 168-370 9-208 (290)
77 2o6q_A Variable lymphocyte rec 99.9 3.2E-20 1.1E-24 175.9 22.1 195 173-392 20-217 (270)
78 3rfs_A Internalin B, repeat mo 99.8 8.6E-21 3E-25 179.9 14.4 201 72-308 41-244 (272)
79 2xwt_C Thyrotropin receptor; s 99.8 2.1E-20 7.2E-25 173.7 15.9 194 193-391 32-237 (239)
80 3rfs_A Internalin B, repeat mo 99.8 2.6E-20 9E-25 176.6 15.5 178 213-393 38-218 (272)
81 2xwt_C Thyrotropin receptor; s 99.8 2.5E-20 8.5E-25 173.3 14.8 204 205-412 23-237 (239)
82 2o6q_A Variable lymphocyte rec 99.8 3.3E-19 1.1E-23 168.8 22.8 176 169-344 37-215 (270)
83 4glp_A Monocyte differentiatio 99.8 1.9E-20 6.4E-25 181.3 13.8 200 191-393 90-307 (310)
84 2ca6_A RAN GTPase-activating p 99.8 8.7E-22 3E-26 196.9 3.1 191 188-396 90-319 (386)
85 1h6u_A Internalin H; cell adhe 99.8 1.9E-19 6.4E-24 173.8 19.3 190 191-392 40-229 (308)
86 1h6u_A Internalin H; cell adhe 99.8 9.7E-20 3.3E-24 175.8 17.3 188 215-412 40-228 (308)
87 2ast_B S-phase kinase-associat 99.8 1.2E-21 4.3E-26 192.0 3.3 218 126-367 48-282 (336)
88 4ay9_X Follicle-stimulating ho 99.8 4.2E-19 1.4E-23 174.8 18.5 239 74-343 11-255 (350)
89 2ca6_A RAN GTPase-activating p 99.8 1E-20 3.5E-25 189.1 5.2 236 182-417 22-319 (386)
90 2ast_B S-phase kinase-associat 99.8 6.6E-21 2.2E-25 186.9 2.9 202 188-390 64-282 (336)
91 4glp_A Monocyte differentiatio 99.8 1.5E-19 5.3E-24 174.8 11.8 197 193-393 65-285 (310)
92 3m19_A Variable lymphocyte rec 99.8 4.8E-18 1.6E-22 158.9 19.5 173 173-370 18-192 (251)
93 3goz_A Leucine-rich repeat-con 99.8 8.6E-21 3E-25 187.8 -0.8 62 334-395 225-299 (362)
94 4ay9_X Follicle-stimulating ho 99.8 4.3E-18 1.5E-22 167.5 17.8 234 152-389 13-255 (350)
95 3m19_A Variable lymphocyte rec 99.8 1E-17 3.5E-22 156.7 18.9 176 72-275 14-191 (251)
96 3goz_A Leucine-rich repeat-con 99.8 1.3E-19 4.5E-24 179.3 4.0 217 175-391 4-264 (362)
97 3cvr_A Invasion plasmid antige 99.8 1.3E-17 4.6E-22 172.6 18.0 181 193-397 60-247 (571)
98 3cvr_A Invasion plasmid antige 99.7 3.6E-17 1.2E-21 169.4 18.8 165 192-378 80-252 (571)
99 1h6t_A Internalin B; cell adhe 99.7 2.4E-17 8.3E-22 157.5 15.4 169 215-393 45-213 (291)
100 1h6t_A Internalin B; cell adhe 99.7 3.6E-17 1.2E-21 156.3 15.6 175 188-373 42-216 (291)
101 2o6s_A Variable lymphocyte rec 99.7 6.3E-17 2.1E-21 146.7 14.9 173 244-422 11-186 (208)
102 2o6s_A Variable lymphocyte rec 99.7 1.6E-16 5.5E-21 144.0 14.9 174 173-355 11-187 (208)
103 4ezg_A Putative uncharacterize 99.7 6.2E-17 2.1E-21 145.4 11.2 151 237-392 41-193 (197)
104 1m9s_A Internalin B; cell inva 99.7 3E-16 1E-20 164.4 16.4 169 215-393 42-210 (605)
105 3e6j_A Variable lymphocyte rec 99.7 1.1E-15 3.8E-20 140.5 17.4 151 242-394 21-173 (229)
106 1m9s_A Internalin B; cell inva 99.7 5.2E-16 1.8E-20 162.5 16.8 175 188-373 39-213 (605)
107 4ezg_A Putative uncharacterize 99.7 2.5E-16 8.5E-21 141.4 11.6 151 215-370 43-194 (197)
108 1xeu_A Internalin C; cellular 99.7 1.7E-16 5.8E-21 149.2 10.7 169 215-394 18-186 (263)
109 2v9t_B SLIT homolog 2 protein 99.7 2.1E-15 7.2E-20 137.7 15.7 145 245-391 16-163 (220)
110 2v9t_B SLIT homolog 2 protein 99.6 2.6E-15 9E-20 137.1 15.9 148 173-322 15-164 (220)
111 1dce_A Protein (RAB geranylger 99.6 1.2E-18 3.9E-23 181.5 -7.8 186 92-302 347-548 (567)
112 2xot_A Amphoterin-induced prot 99.6 1.2E-15 4E-20 150.7 13.7 172 173-346 22-201 (361)
113 2v70_A SLIT-2, SLIT homolog 2 99.6 2.7E-15 9.4E-20 136.9 15.1 147 244-392 15-165 (220)
114 1dce_A Protein (RAB geranylger 99.6 8.7E-18 3E-22 174.9 -2.0 193 189-386 346-566 (567)
115 2v70_A SLIT-2, SLIT homolog 2 99.6 7.1E-15 2.4E-19 134.2 16.3 128 172-299 35-165 (220)
116 2xot_A Amphoterin-induced prot 99.6 2.9E-15 1E-19 147.8 13.7 150 242-391 41-200 (361)
117 3e6j_A Variable lymphocyte rec 99.6 1.5E-14 5E-19 133.0 17.0 127 218-344 42-169 (229)
118 1xeu_A Internalin C; cellular 99.6 2.8E-15 9.6E-20 140.8 11.5 152 212-373 37-188 (263)
119 2ell_A Acidic leucine-rich nuc 99.6 8.3E-15 2.8E-19 127.8 11.0 128 263-391 24-158 (168)
120 2ell_A Acidic leucine-rich nuc 99.5 2.1E-14 7.1E-19 125.2 10.5 134 240-375 24-165 (168)
121 4b8c_D Glucose-repressible alc 99.5 1.4E-15 5E-20 163.2 3.7 190 216-411 173-369 (727)
122 2je0_A Acidic leucine-rich nuc 99.5 1.2E-14 4.1E-19 124.0 8.5 125 263-388 17-148 (149)
123 4b8c_D Glucose-repressible alc 99.5 3E-15 1E-19 160.8 4.9 120 209-330 217-336 (727)
124 3sb4_A Hypothetical leucine ri 99.5 3.5E-13 1.2E-17 131.2 14.2 252 72-338 49-325 (329)
125 2je0_A Acidic leucine-rich nuc 99.5 9.8E-14 3.3E-18 118.3 8.4 124 240-365 17-148 (149)
126 1w8a_A SLIT protein; signaling 99.5 4.1E-13 1.4E-17 119.7 12.7 127 172-300 11-139 (192)
127 1w8a_A SLIT protein; signaling 99.5 6.2E-13 2.1E-17 118.5 13.4 86 308-393 52-139 (192)
128 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-13 7.6E-18 119.6 8.1 130 236-390 15-150 (176)
129 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-13 7.7E-18 119.6 7.2 109 212-322 15-125 (176)
130 2wfh_A SLIT homolog 2 protein 99.4 2.1E-12 7.3E-17 115.0 13.5 103 289-391 33-137 (193)
131 2wfh_A SLIT homolog 2 protein 99.4 2.1E-12 7.2E-17 115.0 13.4 104 170-273 32-136 (193)
132 2o6r_A Variable lymphocyte rec 99.4 7.1E-12 2.4E-16 110.1 15.1 125 243-369 10-136 (177)
133 2o6r_A Variable lymphocyte rec 99.4 7.5E-12 2.6E-16 109.9 14.1 126 173-300 11-137 (177)
134 3sb4_A Hypothetical leucine ri 99.3 9.5E-13 3.3E-17 128.1 7.8 100 286-387 225-328 (329)
135 4fdw_A Leucine rich hypothetic 99.3 1.3E-10 4.6E-15 115.5 21.4 74 73-156 136-211 (401)
136 1ds9_A Outer arm dynein; leuci 99.3 1.6E-14 5.5E-19 129.6 -9.2 125 235-386 43-180 (198)
137 4fs7_A Uncharacterized protein 99.3 5.9E-10 2E-14 111.1 22.3 310 16-389 58-375 (394)
138 1ds9_A Outer arm dynein; leuci 99.2 4.5E-14 1.5E-18 126.7 -7.6 142 263-407 18-180 (198)
139 4fdw_A Leucine rich hypothetic 99.2 1.7E-09 5.8E-14 107.5 23.4 260 72-370 113-383 (401)
140 2r9u_A Variable lymphocyte rec 99.2 9.5E-11 3.3E-15 102.3 11.7 102 290-393 15-118 (174)
141 3g39_A Variable lymphocyte rec 99.2 1.3E-10 4.4E-15 101.0 11.9 103 289-393 11-115 (170)
142 2r9u_A Variable lymphocyte rec 99.2 3.7E-10 1.3E-14 98.5 13.0 102 243-346 15-117 (174)
143 3g39_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 98.5 12.4 78 243-322 12-90 (170)
144 4fs7_A Uncharacterized protein 99.1 4.8E-09 1.6E-13 104.5 21.7 317 3-385 71-393 (394)
145 3un9_A NLR family member X1; l 99.0 4.6E-11 1.6E-15 117.6 -0.3 84 192-275 155-251 (372)
146 3un9_A NLR family member X1; l 98.9 2.7E-11 9.3E-16 119.3 -3.8 84 310-393 155-252 (372)
147 4gt6_A Cell surface protein; l 98.9 2.6E-07 9E-12 91.9 23.9 314 17-391 51-389 (394)
148 2ifg_A High affinity nerve gro 98.8 9.1E-09 3.1E-13 100.6 10.7 103 174-277 13-117 (347)
149 2ifg_A High affinity nerve gro 98.8 1.1E-08 3.7E-13 100.1 11.0 103 267-370 12-116 (347)
150 4gt6_A Cell surface protein; l 98.8 6.6E-07 2.3E-11 89.0 23.1 122 5-157 66-191 (394)
151 4h09_A Hypothetical leucine ri 98.8 1.8E-06 6.2E-11 85.3 23.9 103 212-317 213-317 (379)
152 2ra8_A Uncharacterized protein 98.7 7.8E-09 2.7E-13 100.8 3.8 61 332-392 250-319 (362)
153 2ra8_A Uncharacterized protein 98.5 4.9E-08 1.7E-12 95.2 3.4 39 262-300 278-320 (362)
154 4h09_A Hypothetical leucine ri 98.5 5.1E-05 1.7E-09 74.8 25.1 105 282-389 212-319 (379)
155 1io0_A Tropomodulin; LRR prote 98.2 3.8E-07 1.3E-11 80.1 2.0 60 332-391 91-162 (185)
156 3e4g_A ATP synthase subunit S, 98.1 4.4E-06 1.5E-10 71.5 5.8 84 311-394 62-153 (176)
157 1io0_A Tropomodulin; LRR prote 98.0 1.3E-06 4.4E-11 76.7 2.3 88 306-393 32-136 (185)
158 3e4g_A ATP synthase subunit S, 97.8 2.2E-05 7.6E-10 67.1 5.5 59 335-393 62-127 (176)
159 3rw6_A Nuclear RNA export fact 97.6 5.5E-05 1.9E-09 69.7 5.3 12 358-369 221-232 (267)
160 3rw6_A Nuclear RNA export fact 97.5 5.4E-05 1.9E-09 69.8 4.2 62 215-277 169-234 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00095 3.2E-08 58.1 2.6 14 334-347 98-111 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00099 3.4E-08 58.0 2.6 83 308-390 39-136 (197)
163 3rfe_A Platelet glycoprotein I 96.2 0.0059 2E-07 49.5 5.4 54 76-137 12-67 (130)
164 3rfe_A Platelet glycoprotein I 95.6 0.019 6.4E-07 46.4 5.9 52 338-391 12-66 (130)
165 2lz0_A Uncharacterized protein 31.2 51 0.0018 24.5 4.0 47 15-82 6-53 (100)
166 2lz0_A Uncharacterized protein 25.1 1.1E+02 0.0039 22.5 5.0 14 282-295 38-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.1e-48 Score=418.75 Aligned_cols=505 Identities=19% Similarity=0.209 Sum_probs=310.3
Q ss_pred EeecCcccccccCch--hhhccccCceeeeeccccccchhh---hccchhhhhcc-------------------------
Q 037604 9 FLDLSKIKGINLDPG--TFTNMSNMRLLKFYVPKFYGIERF---LSMSIEEQLSY------------------------- 58 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~--~f~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~~~~~------------------------- 58 (540)
+||+++|......+. +|.++++|++|++++|.+.+.... ..+..++.++.
T Consensus 104 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L 183 (768)
T 3rgz_A 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183 (768)
T ss_dssp EEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEE
T ss_pred EEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEE
Confidence 355556554443344 566666666666666655433211 22333333333
Q ss_pred --cccccCC--CCCccccCcEEEeecCCCCCC-CCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecC
Q 037604 59 --SKVQLPN--GLDYLPEKLRYLHWDTYPLRI-LPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFE 133 (540)
Q Consensus 59 --~~~~~~~--~~~~l~~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~ 133 (540)
....+.. .+..+ .+|++|++++|.+.. +|....+++|++|++++|.++.. +|..++++++|++|+++
T Consensus 184 ~Ls~n~l~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 184 AISGNKISGDVDVSRC-VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-------FSRAISTCTELKLLNIS 255 (768)
T ss_dssp ECCSSEEESCCBCTTC-TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-------HHHHTTTCSSCCEEECC
T ss_pred ECCCCcccccCCcccC-CcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-------ccHHHhcCCCCCEEECC
Confidence 3222211 12334 366666666666644 33322566677777776666532 45566666667777776
Q ss_pred CCCCCcccCCCCccCCCcEEEccCCcCccccCCCC----CCeeEEEcccCCce-eccccccCCCCCCEEEcccCcccccc
Q 037604 134 GCKSLRSFPSNLHFVCPVTIDFSYCVNLIEFPQIS----GKITRLYLGCSAIE-EVPSSIECLTDLEVLDLMYCKRLKRI 208 (540)
Q Consensus 134 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~----~~l~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~ 208 (540)
+|.+.+.+|.. .+++|++|++++|.+.+.+|..+ .++++|++++|.++ .+|..++.+++|++|++++|.+.+.+
T Consensus 256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 66665555444 56666666666666655555443 45677777777766 55666777777777777777766666
Q ss_pred chh-cCCCCCCcEEeccCCcCCCcCchhhhCC---------------------------CCCCEEEcCCCCCc-ccCccc
Q 037604 209 STR-FCKLRSLVDLCLNGCLNLERFPEILEKM---------------------------EHLKCINLDRTAIT-ELPSSF 259 (540)
Q Consensus 209 ~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~l~-~l~~~~ 259 (540)
|.. +..+++|++|++++|.+.+.+|..+..+ ++|++|++++|.++ .+|..+
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 654 6667777777777766655555555443 34444555554444 455566
Q ss_pred CCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCC-CCccccCCCCccEEEccCCCCCCcccccccCCCCCcE
Q 037604 260 ENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQ-LPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVA 338 (540)
Q Consensus 260 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 338 (540)
..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 677777777777777777777777777888888888887774 5777777888888888888888788888888888888
Q ss_pred EeccCCCCCC-CChhhcCCCCCcEEEecCCCCc-ccchhccCCCCCCEEEecCCCCCCcCCCC-----------------
Q 037604 339 LHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQ-SLPASIKQLSQLSSLELNDCKMLQSLPEL----------------- 399 (540)
Q Consensus 339 L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~----------------- 399 (540)
|++++|.+.+ +|.+++.+++|+.|++++|+++ .+|..+..+++|+.|++++|++.+.+|..
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 8888888875 7778888888888888888876 77778888888888888888776655521
Q ss_pred --------------------------------------------------------CCCccEEEecCCCCCCcCCCCC--
Q 037604 400 --------------------------------------------------------PLCLKYLHLRDCKMLQSLPALP-- 421 (540)
Q Consensus 400 --------------------------------------------------------~~~L~~L~l~~~~~l~~~~~~~-- 421 (540)
.++|+.|++++|...+.+|..+
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 1457788888888888888654
Q ss_pred -CCccEEeecCCCCCCCCCCcc---ccccccccccccccccCCCCCccccccchhhhhhhccCCCccccccccc--ccCC
Q 037604 422 -LCLESLDLRDCNMLRSLPELP---LCLQELDATNCNRLQSLAEIPSCLQELDASVLETLSKLSPDFRVWLPAF--LLQP 495 (540)
Q Consensus 422 -~~L~~L~l~~~~~l~~~~~~~---~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~~~~~l~~l~~~~~~~lp~~--~~~l 495 (540)
..|+.|++++|...+.+|..+ .+|+.|+++++. + .+.+|..+..+..+..-.++. +.+.+.+|.. ....
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~-l--~g~ip~~l~~l~~L~~L~ls~--N~l~g~iP~~~~~~~~ 729 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-L--DGRIPQAMSALTMLTEIDLSN--NNLSGPIPEMGQFETF 729 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-C--EECCCGGGGGCCCCSEEECCS--SEEEEECCSSSSGGGS
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc-c--cCcCChHHhCCCCCCEEECcC--CcccccCCCchhhccC
Confidence 348888898888888888644 356666666643 2 234555554443332222222 3344455543 1122
Q ss_pred eEeeeccccccch----hHHHHHHHhhHHHHHHHHHH
Q 037604 496 IYFGFINSLKLNG----KANKKILADSQLRIRHMAIA 528 (540)
Q Consensus 496 ~~l~~~~c~~l~~----~~~~~~~~~~~~~i~~~~~~ 528 (540)
....|.+++.|-+ .|... .+.+|.+|+|+|.+
T Consensus 730 ~~~~~~gN~~Lcg~~l~~C~~~-~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 730 PPAKFLNNPGLCGYPLPRCDPS-NADGYAHHQRSHHH 765 (768)
T ss_dssp CGGGGCSCTEEESTTSCCCCSC-C-------------
T ss_pred CHHHhcCCchhcCCCCcCCCCC-ccCCCCCCCCcccc
Confidence 2234556655544 23222 36799999999875
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-45 Score=401.13 Aligned_cols=468 Identities=19% Similarity=0.170 Sum_probs=346.6
Q ss_pred hhhhccccCceeeeeccccccc--h--hhhccchhhhhcccccc----cCCCC-CccccCcEEEeecCCCCCCCCC----
Q 037604 23 GTFTNMSNMRLLKFYVPKFYGI--E--RFLSMSIEEQLSYSKVQ----LPNGL-DYLPEKLRYLHWDTYPLRILPS---- 89 (540)
Q Consensus 23 ~~f~~l~~L~~L~l~~n~l~~~--~--~~~~~~~~~~~~~~~~~----~~~~~-~~l~~~L~~L~l~~~~l~~l~~---- 89 (540)
..|.++++|++|++++|.+.|. . .+..+..++.++.+... .|..+ .++ ++|++|++++|.+...+.
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-NSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC-TTCSEEECCSSCCEEETHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC-CCCCEEECCCCccCCcCChhhh
Confidence 5799999999999999999863 2 67788888888887654 34333 556 478888888887754332
Q ss_pred -----------------------CCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-
Q 037604 90 -----------------------NFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL- 145 (540)
Q Consensus 90 -----------------------~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~- 145 (540)
...+++|++|++++|.+... +|. ++++++|++|++++|.+.+.+|..+
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~ 244 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG-------IPF-LGDCSALQHLDISGNKLSGDFSRAIS 244 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSC-------CCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred hhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCC-------Ccc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence 12344555555555554421 444 7888888888888888877788777
Q ss_pred ccCCCcEEEccCCcCccccCC-CCCCeeEEEcccCCce-eccccccCC-CCCCEEEcccCccccccchhcCCCCCCcEEe
Q 037604 146 HFVCPVTIDFSYCVNLIEFPQ-ISGKITRLYLGCSAIE-EVPSSIECL-TDLEVLDLMYCKRLKRISTRFCKLRSLVDLC 222 (540)
Q Consensus 146 ~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~L~~~~l~-~l~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 222 (540)
.+++|++|++++|.+.+..|. .+.++++|++++|.++ .+|..+... ++|++|++++|.+.+.+|..++++++|++|+
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE
T ss_pred cCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEE
Confidence 888888888888887766654 4567799999988888 788887775 9999999999998889999999999999999
Q ss_pred ccCCcCCCcCchh-hhCCCCCCEEEcCCCCCc-ccCcccCCC---------------------------CCCCeEccCCC
Q 037604 223 LNGCLNLERFPEI-LEKMEHLKCINLDRTAIT-ELPSSFENL---------------------------TGLKGLSVSDC 273 (540)
Q Consensus 223 l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~-~l~~~~~~l---------------------------~~L~~L~l~~~ 273 (540)
+++|.+.+.+|.. +..+++|++|++++|.++ .+|..+..+ ++|++|++++|
T Consensus 325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n 404 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404 (768)
T ss_dssp CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS
T ss_pred CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC
Confidence 9999888788865 899999999999999887 566554433 44555555555
Q ss_pred cCCCcCCCCCCCCCCCcEEEccCCCCCC-CCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCC-CCh
Q 037604 274 SKLDKLPDNIGNLESLHHMSAFGSAISQ-LPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVME-IPQ 351 (540)
Q Consensus 274 ~~~~~l~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~ 351 (540)
.+.+.+|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+ +|.
T Consensus 405 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence 5555666677777788888888887774 47777888888888888888888888888888888888888888875 777
Q ss_pred hhcCCCCCcEEEecCCCCc-ccchhccCCCCCCEEEecCCCCCCcCCCCC---CCccEEEecCCCCCCcCCCC-------
Q 037604 352 EIARLSSLIDLHIGGNNFQ-SLPASIKQLSQLSSLELNDCKMLQSLPELP---LCLKYLHLRDCKMLQSLPAL------- 420 (540)
Q Consensus 352 ~~~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~------- 420 (540)
.+..+++|+.|++++|+++ .+|.+++.+++|++|++++|++.+.+|..+ ++|+.|++++|+..+.+|..
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 8888888888888888877 778888888888888888888877777543 78888888888766555421
Q ss_pred ------------------------------------------------------------------CCCccEEeecCCCC
Q 037604 421 ------------------------------------------------------------------PLCLESLDLRDCNM 434 (540)
Q Consensus 421 ------------------------------------------------------------------~~~L~~L~l~~~~~ 434 (540)
+..|+.|++++|..
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 12378888998888
Q ss_pred CCCCCCccc---cccccccccccccccCCCCCccccccchhhhhhhccCCCccccccccc---ccCCeEeeecccc
Q 037604 435 LRSLPELPL---CLQELDATNCNRLQSLAEIPSCLQELDASVLETLSKLSPDFRVWLPAF---LLQPIYFGFINSL 504 (540)
Q Consensus 435 l~~~~~~~~---~L~~L~i~~c~~l~~~~~~~~~l~~L~~~~~~~l~~l~~~~~~~lp~~---~~~l~~l~~~~c~ 504 (540)
.+.+|..+. +|+.|+++++ ...+.+|..+..+..+....++. +.+.+.+|.. +..+.+++++++.
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N---~l~g~ip~~l~~L~~L~~LdLs~--N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHN---DISGSIPDEVGDLRGLNILDLSS--NKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSS---CCCSCCCGGGGGCTTCCEEECCS--SCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred cccCCHHHhccccCCEEeCcCC---ccCCCCChHHhCCCCCCEEECCC--CcccCcCChHHhCCCCCCEEECcCCc
Confidence 888886443 4666666654 33345666665554443333332 4455566654 4456778888764
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-41 Score=360.92 Aligned_cols=466 Identities=19% Similarity=0.158 Sum_probs=321.8
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILP 88 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~ 88 (540)
+||+++|.+..+.+.+|.++++|++|++++|.+. ...|+.+..+ .+|++|++++|.+..++
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------------------~~~~~~~~~l-~~L~~L~Ls~n~l~~~~ 97 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------------------WIHEDTFQSQ-HRLDTLVLTANPLIFMA 97 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC------------------EECTTTTTTC-TTCCEEECTTCCCSEEC
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccc------------------eeChhhccCc-cccCeeeCCCCcccccC
Confidence 5677777778888888888888888888888875 4556777777 48888888888887664
Q ss_pred C-CC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcc-cCCCCccCCCcEEEccCCcCccccC
Q 037604 89 S-NF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRS-FPSNLHFVCPVTIDFSYCVNLIEFP 165 (540)
Q Consensus 89 ~-~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~ 165 (540)
+ .+ .+++|++|++++|.++.+ .+..++++++|++|++++|.+.+. .|....+++|++|++++|.+....+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSI-------DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCG-------GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred hhhhcccccccEeeccccCcccC-------CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 3 34 788888888888888754 356678888888888888776653 3444478888888888887765444
Q ss_pred C---CCCCee--EEEcccCCceeccccccCCCCCCEEEcccCccccccc--------------------------hhcCC
Q 037604 166 Q---ISGKIT--RLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRIS--------------------------TRFCK 214 (540)
Q Consensus 166 ~---~~~~l~--~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~--------------------------~~l~~ 214 (540)
. .+.+++ .|+++.|.++.++.......+|+.|++++|....... ..+..
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 3 345555 7788888888776665566677777777654211110 11111
Q ss_pred CC--CCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEE
Q 037604 215 LR--SLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHM 292 (540)
Q Consensus 215 l~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 292 (540)
+. +|++|++++|.+.+..+..++.+++|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 11 6778888887776666666888888888888888888888888888888888888887777667777888888888
Q ss_pred EccCCCCC-CCCc-cccCCCCccEEEccCCCCCCcc--cccccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCC
Q 037604 293 SAFGSAIS-QLPS-SVADSNVLGILDFSRCKGLESF--PRSLLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGN 367 (540)
Q Consensus 293 ~l~~~~l~-~l~~-~~~~l~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~ 367 (540)
++++|.+. .++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+ .+..+..+++|+.|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 88888776 4443 4777888888888888876654 5667788888888888888777 4566778888888888888
Q ss_pred CCccc-c-hhccCCCCCCEEEecCCCCCCcCCCC---CCCccEEEecCCCCCCc-CC-----CCCCCccEEeecCCCCCC
Q 037604 368 NFQSL-P-ASIKQLSQLSSLELNDCKMLQSLPEL---PLCLKYLHLRDCKMLQS-LP-----ALPLCLESLDLRDCNMLR 436 (540)
Q Consensus 368 ~l~~l-p-~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~-~~-----~~~~~L~~L~l~~~~~l~ 436 (540)
.++.. + ..+..+++|++|++++|.+.+..|.. .++|++|++++|+..+. ++ ..+.+|++|++++|...+
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 87643 2 33677888888888888776655543 37888888888876542 11 223558888888887665
Q ss_pred CCCC---ccccccccccccccccccCCCCCccccccchhhhhhhccCCCccccccc---ccccCCeEeeecccccc
Q 037604 437 SLPE---LPLCLQELDATNCNRLQSLAEIPSCLQELDASVLETLSKLSPDFRVWLP---AFLLQPIYFGFINSLKL 506 (540)
Q Consensus 437 ~~~~---~~~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~~~~~l~~l~~~~~~~lp---~~~~~l~~l~~~~c~~l 506 (540)
..|. ..++|++|+++++. ++. ..|..+..+..+ .-.+. .+.+....| ..+..+.++++.+++--
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~-l~~--~~~~~l~~l~~L-~L~L~--~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNR-LTS--SSIEALSHLKGI-YLNLA--SNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSC-CCG--GGGGGGTTCCSC-EEECC--SSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred cChhhhccccCCCEEECCCCc-cCc--CChhHhCccccc-EEECc--CCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 5554 23467777777753 322 233444443333 11111 112222222 23456677888887743
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-41 Score=360.25 Aligned_cols=436 Identities=17% Similarity=0.186 Sum_probs=247.3
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccch--hhhccchhhhhccccccc----CCCCCccccCcEEEeecCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIE--RFLSMSIEEQLSYSKVQL----PNGLDYLPEKLRYLHWDTY 82 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~L~l~~~ 82 (540)
+||+++|++..+.+++|.++++|++|++++|.+.++. .+..+..++.++.....+ +..+..+ .+|++|++++|
T Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l-~~L~~L~L~~n 139 (606)
T 3t6q_A 61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ-KTLESLYLGSN 139 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTC-TTCCEEECCSS
T ss_pred EEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccC-CcccEEECCCC
Confidence 5678888888999999999999999999999987432 233333333333333221 1223333 24444444444
Q ss_pred CCCCC--CCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCC--EEecCCCCCCcccCCCCccCCCcEEEccCC
Q 037604 83 PLRIL--PSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLS--MLNFEGCKSLRSFPSNLHFVCPVTIDFSYC 158 (540)
Q Consensus 83 ~l~~l--~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~--~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~ 158 (540)
.+..+ |....+++|++|++++|.++.+ .|..++.+++|+ +|++++|.+.+..|..+....|+.+++++|
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYL-------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp CCCCCCCCTTCCCTTCCEEECCSSCCCEE-------CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred cccccCcccccCCcccCEEEcccCccccc-------ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence 44433 2223444444444444444432 233344444444 444444444443333333344444444443
Q ss_pred cCccccC-----------------------------CCC--CCeeEEEcccCCceecccc-ccCCCCCCEEEcccCcccc
Q 037604 159 VNLIEFP-----------------------------QIS--GKITRLYLGCSAIEEVPSS-IECLTDLEVLDLMYCKRLK 206 (540)
Q Consensus 159 ~~~~~~~-----------------------------~~~--~~l~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~ 206 (540)
....... ... ..++.|+++++.++.++.. +..+++|++|++++|.+.
T Consensus 213 ~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~- 291 (606)
T 3t6q_A 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291 (606)
T ss_dssp SCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-
T ss_pred hhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-
Confidence 2110000 000 0346666666666655433 566667777777766543
Q ss_pred ccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCc-ccCcc-cCCCCCCCeEccCCCcCCCcC--CCC
Q 037604 207 RISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAIT-ELPSS-FENLTGLKGLSVSDCSKLDKL--PDN 282 (540)
Q Consensus 207 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~-~~~l~~L~~L~l~~~~~~~~l--~~~ 282 (540)
.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+.+.. +..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 55666666667777777766665555566666677777777666655 44433 666666777777666665543 555
Q ss_pred CCCCCCCcEEEccCCCCCCC-CccccCCCCccEEEccCCCCCCcccc-cccCCCCCcEEeccCCCCCC-CChhhcCCCCC
Q 037604 283 IGNLESLHHMSAFGSAISQL-PSSVADSNVLGILDFSRCKGLESFPR-SLLGLSSLVALHIRNFAVME-IPQEIARLSSL 359 (540)
Q Consensus 283 ~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L 359 (540)
+..+++|++|++++|.+.++ +..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.. .+..+..+++|
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 66666777777776666654 44566666677777776665554433 25666667777777766665 34456666677
Q ss_pred cEEEecCCCCcc--cc--hhccCCCCCCEEEecCCCCCCcCCCC---CCCccEEEecCCCCCCcCCCCCC---CccEEee
Q 037604 360 IDLHIGGNNFQS--LP--ASIKQLSQLSSLELNDCKMLQSLPEL---PLCLKYLHLRDCKMLQSLPALPL---CLESLDL 429 (540)
Q Consensus 360 ~~L~l~~~~l~~--lp--~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l 429 (540)
++|++++|.++. ++ ..+..+++|++|++++|.+.+..|.. .++|++|++++|+..+..|..+. .| .|++
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 777777766653 12 34566667777777776655544432 25666777777665554443333 35 6666
Q ss_pred cCCCCCCCCCCc---ccccccccccccc
Q 037604 430 RDCNMLRSLPEL---PLCLQELDATNCN 454 (540)
Q Consensus 430 ~~~~~l~~~~~~---~~~L~~L~i~~c~ 454 (540)
++|...+..|.. .++|++|++.+++
T Consensus 531 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 531 ASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 666665544432 2356666666543
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-42 Score=369.74 Aligned_cols=424 Identities=15% Similarity=0.212 Sum_probs=332.8
Q ss_pred EEEeecCcccccccCchhhhccccCceeeeeccccccchhhhc------------cchhhhhcccc----cccCCCCCcc
Q 037604 7 GIFLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLS------------MSIEEQLSYSK----VQLPNGLDYL 70 (540)
Q Consensus 7 ~i~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~------------~~~~~~~~~~~----~~~~~~~~~l 70 (540)
...||++++.+....|.+|+++++|++|++++|.+.....+.. ...++ ++... ...|..+..+
T Consensus 83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGSCHH
T ss_pred EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhHHHH
Confidence 4456666666665566799999999999999997511000000 00000 00000 1111111100
Q ss_pred ------------------ccCcEEEeec--CCCCCCCCCCC-CCCCceEeecCCcchhhh-----hccc-----cCcCCC
Q 037604 71 ------------------PEKLRYLHWD--TYPLRILPSNF-KPKNLVELNLRFSKVEQL-----WEGE-----KACVPS 119 (540)
Q Consensus 71 ------------------~~~L~~L~l~--~~~l~~l~~~~-~~~~L~~L~Ls~n~i~~l-----~~g~-----~~~lp~ 119 (540)
...++.+.+. +|.++.||..+ .+++|++|+|++|.++.. |... .+.+|+
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~ 241 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch
Confidence 0123333333 45666688776 789999999999988741 0000 000688
Q ss_pred ccc--CCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCc-Ccc-ccCCCC---------CCeeEEEcccCCceecc
Q 037604 120 SIQ--NFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCV-NLI-EFPQIS---------GKITRLYLGCSAIEEVP 185 (540)
Q Consensus 120 ~~~--~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~-~~~-~~~~~~---------~~l~~L~L~~~~l~~l~ 185 (540)
.++ ++++|++|++++|.+.+.+|..+ .+++|++|++++|. +.+ .+|..+ .++++|++++|.++.+|
T Consensus 242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip 321 (636)
T 4eco_A 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321 (636)
T ss_dssp CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC
T ss_pred hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC
Confidence 888 99999999999999999999988 89999999999998 665 566433 67899999999999999
Q ss_pred c--cccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCC-CCEEEcCCCCCcccCcccCCC
Q 037604 186 S--SIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEH-LKCINLDRTAITELPSSFENL 262 (540)
Q Consensus 186 ~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~l~~l~~~~~~l 262 (540)
. .++.+++|++|++++|.+.+.+| .++.+++|++|++++|.+. .+|..+..+++ |++|++++|.++.+|..+..+
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~ 399 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence 8 89999999999999999888999 7999999999999998776 78888999999 999999999999999887765
Q ss_pred C--CCCeEccCCCcCCCcCCCCCC-------CCCCCcEEEccCCCCCCCCccc-cCCCCccEEEccCCCCCCccccccc-
Q 037604 263 T--GLKGLSVSDCSKLDKLPDNIG-------NLESLHHMSAFGSAISQLPSSV-ADSNVLGILDFSRCKGLESFPRSLL- 331 (540)
Q Consensus 263 ~--~L~~L~l~~~~~~~~l~~~~~-------~l~~L~~L~l~~~~l~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~- 331 (540)
+ +|+.|++++|.+.+..|..+. .+++|++|++++|.++.+|..+ ..+++|++|++++|.+. .+|....
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~ 478 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLK 478 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhc
Confidence 5 899999999999998888887 7889999999999999997764 45899999999999987 5555432
Q ss_pred CC-------CCCcEEeccCCCCCCCChhhc--CCCCCcEEEecCCCCcccchhccCCCCCCEEEec------CCCCCCcC
Q 037604 332 GL-------SSLVALHIRNFAVMEIPQEIA--RLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELN------DCKMLQSL 396 (540)
Q Consensus 332 ~~-------~~L~~L~l~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~------~~~~~~~~ 396 (540)
.. ++|++|++++|.+..+|..+. .+++|+.|++++|+++.+|..+..+++|++|+++ +|.+.+.+
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred cccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccC
Confidence 22 399999999999999999887 9999999999999999999999999999999995 56677777
Q ss_pred CCCC---CCccEEEecCCCCCCcCCCCC-CCccEEeecCCCCC
Q 037604 397 PELP---LCLKYLHLRDCKMLQSLPALP-LCLESLDLRDCNML 435 (540)
Q Consensus 397 ~~~~---~~L~~L~l~~~~~l~~~~~~~-~~L~~L~l~~~~~l 435 (540)
|..+ ++|+.|++++|.. +.+|..+ .+|+.|++++|+..
T Consensus 559 p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 559 PEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNI 600 (636)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTC
T ss_pred hHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCc
Confidence 7544 8899999999997 8888644 56999999999765
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-41 Score=360.29 Aligned_cols=417 Identities=19% Similarity=0.179 Sum_probs=282.4
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCC-
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRIL- 87 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l- 87 (540)
+||+++|.+..+.+.+|.++++|++|++++|.+. ...|..+..+ .+|++|++++|.++.+
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------~i~~~~~~~l-~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE------------------TIEDKAWHGL-HHLSNLILTGNPIQSFS 96 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------------------EECTTTTTTC-TTCCEEECTTCCCCCCC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCccc------------------ccCHHHhhch-hhcCEeECCCCcccccC
Confidence 4677777778888888999999999999998885 3345667777 4888888888888777
Q ss_pred CCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCc-ccCCCC-ccCCCcEEEccCCcCcccc
Q 037604 88 PSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLR-SFPSNL-HFVCPVTIDFSYCVNLIEF 164 (540)
Q Consensus 88 ~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~~~~-~l~~L~~L~L~~~~~~~~~ 164 (540)
|..+ .+++|++|++++|.++.+ .+..++++++|++|++++|.+.+ .+|..+ .+++|++|++++|.+....
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASL-------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCS-------SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred hhhcCCcccCCEEEccCCccccc-------cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 4444 788888888888887753 34667888888888888877665 567777 7888888888888776665
Q ss_pred CCCCCCe-------eEEEcccCCceeccccccCCCCCCEEEcccCcccc-ccchh-------------------------
Q 037604 165 PQISGKI-------TRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLK-RISTR------------------------- 211 (540)
Q Consensus 165 ~~~~~~l-------~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~------------------------- 211 (540)
+..++.+ ++|+++.|.++.++.......+|+.|++++|...+ ..|..
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 5544433 37788888888777666555677788877765431 11222
Q ss_pred -------------------------------cCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccC
Q 037604 212 -------------------------------FCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFE 260 (540)
Q Consensus 212 -------------------------------l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~ 260 (540)
+..+++|+.|++++|.. ..+| .+..+++|++|++++|.+..+|. +
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l~~lp~-~- 325 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQLKQFPT-L- 325 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCCSSCCC-C-
T ss_pred cChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccCccccc-C-
Confidence 44455666666666544 3344 55666667777777766666663 3
Q ss_pred CCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC---CccccCCCCccEEEccCCCCCCcccccccCCCCCc
Q 037604 261 NLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL---PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLV 337 (540)
Q Consensus 261 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 337 (540)
.+++|+.|++++|...+.. .+..+++|++|++++|.+++. +..+..+++|++|++++|.+.+ +|..+..+++|+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 402 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ 402 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence 6667777777666544433 455667777777777776654 5666677777777777777443 456677777777
Q ss_pred EEeccCCCCCCCC--hhhcCCCCCcEEEecCCCCcc-cchhccCCCCCCEEEecCCCCCCc-CCCC---CCCccEEEecC
Q 037604 338 ALHIRNFAVMEIP--QEIARLSSLIDLHIGGNNFQS-LPASIKQLSQLSSLELNDCKMLQS-LPEL---PLCLKYLHLRD 410 (540)
Q Consensus 338 ~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~-lp~~l~~l~~L~~L~l~~~~~~~~-~~~~---~~~L~~L~l~~ 410 (540)
+|++++|.+.+.+ ..+..+++|+.|++++|.++. .|..+..+++|++|++++|.+.+. +|.. .++|+.|++++
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 7777777777643 356677777777777777663 455667777777777777766552 4433 36777777777
Q ss_pred CCCCCcCCCCC---CCccEEeecCCCCCCCCCCc---cccccccccccccccccC
Q 037604 411 CKMLQSLPALP---LCLESLDLRDCNMLRSLPEL---PLCLQELDATNCNRLQSL 459 (540)
Q Consensus 411 ~~~l~~~~~~~---~~L~~L~l~~~~~l~~~~~~---~~~L~~L~i~~c~~l~~~ 459 (540)
|...+..|..+ .+|++|++++|...+..|.. .++|++|++++|. ++.+
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~ 536 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETS 536 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCE
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-Cccc
Confidence 76655554433 44777777777766655542 3457777777753 4433
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.1e-41 Score=363.35 Aligned_cols=424 Identities=15% Similarity=0.172 Sum_probs=331.9
Q ss_pred EEEeecCcccccccCchhhhccccCceeee-eccccccchhhhccch-----------------hhhh------------
Q 037604 7 GIFLDLSKIKGINLDPGTFTNMSNMRLLKF-YVPKFYGIERFLSMSI-----------------EEQL------------ 56 (540)
Q Consensus 7 ~i~L~~~~~~~~~~~~~~f~~l~~L~~L~l-~~n~l~~~~~~~~~~~-----------------~~~~------------ 56 (540)
...||++++.+....|.+|+++++|++|++ ++|.++|...+..... ....
T Consensus 325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence 455677777666666679999999999999 8888776532221100 0000
Q ss_pred ----cccccccCCCCCccccCcEEEeecC--CCCCCCCCCC-CCCCceEeecCCcchhhh--hcccc--------CcCCC
Q 037604 57 ----SYSKVQLPNGLDYLPEKLRYLHWDT--YPLRILPSNF-KPKNLVELNLRFSKVEQL--WEGEK--------ACVPS 119 (540)
Q Consensus 57 ----~~~~~~~~~~~~~l~~~L~~L~l~~--~~l~~l~~~~-~~~~L~~L~Ls~n~i~~l--~~g~~--------~~lp~ 119 (540)
.......+...... ..++.+.+.. |.++.||..+ .+++|++|+|++|.++.. ..... +.+|+
T Consensus 405 ~~~l~~~~~~~~i~~~~~-l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~ 483 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483 (876)
T ss_dssp HHHHHTCTTSCCCCCCCC-CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHhhhCccccccccccc-cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh
Confidence 00000001011111 2344444443 6666688776 889999999999988740 00000 01788
Q ss_pred ccc--CCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCc-Ccc-ccCC----------CCCCeeEEEcccCCceec
Q 037604 120 SIQ--NFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCV-NLI-EFPQ----------ISGKITRLYLGCSAIEEV 184 (540)
Q Consensus 120 ~~~--~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~-~~~-~~~~----------~~~~l~~L~L~~~~l~~l 184 (540)
.++ ++++|++|++++|.+.+.+|..+ .+++|++|++++|. +.+ .+|. .+.+|+.|++++|.++.+
T Consensus 484 ~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i 563 (876)
T 4ecn_A 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563 (876)
T ss_dssp CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC
T ss_pred hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc
Confidence 877 99999999999999999999888 99999999999998 655 4553 234789999999999999
Q ss_pred cc--cccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCC-CCEEEcCCCCCcccCcccCC
Q 037604 185 PS--SIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEH-LKCINLDRTAITELPSSFEN 261 (540)
Q Consensus 185 ~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~l~~l~~~~~~ 261 (540)
|. .++++++|+.|++++|.+. .+| .++.+++|++|++++|.+. .+|..+..+++ |+.|++++|.++.+|..+..
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~ 640 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCT
T ss_pred CChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhc
Confidence 98 8999999999999999876 888 7999999999999998877 78888999999 99999999999999988777
Q ss_pred CCC--CCeEccCCCcCCCcCCCC---CC--CCCCCcEEEccCCCCCCCCcccc-CCCCccEEEccCCCCCCcccccccC-
Q 037604 262 LTG--LKGLSVSDCSKLDKLPDN---IG--NLESLHHMSAFGSAISQLPSSVA-DSNVLGILDFSRCKGLESFPRSLLG- 332 (540)
Q Consensus 262 l~~--L~~L~l~~~~~~~~l~~~---~~--~l~~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~- 332 (540)
++. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.++.+|..+. .+++|+.|++++|.+. .+|..+..
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~ 719 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKP 719 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcc
Confidence 654 999999999988766532 22 34589999999999999987764 7899999999999877 56654433
Q ss_pred -------CCCCcEEeccCCCCCCCChhhc--CCCCCcEEEecCCCCcccchhccCCCCCCEEEecC------CCCCCcCC
Q 037604 333 -------LSSLVALHIRNFAVMEIPQEIA--RLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELND------CKMLQSLP 397 (540)
Q Consensus 333 -------~~~L~~L~l~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~------~~~~~~~~ 397 (540)
+++|+.|++++|.+..+|..+. .+++|+.|++++|+++.+|..+..+++|+.|++++ |.+.+.+|
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred ccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 2389999999999999999987 89999999999999999999999999999999977 66677777
Q ss_pred CC---CCCccEEEecCCCCCCcCCCCC-CCccEEeecCCCCCC
Q 037604 398 EL---PLCLKYLHLRDCKMLQSLPALP-LCLESLDLRDCNMLR 436 (540)
Q Consensus 398 ~~---~~~L~~L~l~~~~~l~~~~~~~-~~L~~L~l~~~~~l~ 436 (540)
.. .++|+.|++++|.. +.+|..+ .+|+.|++++|+...
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNIS 841 (876)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCE
T ss_pred HHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCc
Confidence 54 38899999999987 8888754 459999999998654
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.2e-39 Score=345.41 Aligned_cols=281 Identities=21% Similarity=0.201 Sum_probs=155.0
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccch--hhhccchhhhhccccc---ccCC-CCCccccCcEEEeecCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIE--RFLSMSIEEQLSYSKV---QLPN-GLDYLPEKLRYLHWDTY 82 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~~~~~~---~~~~-~~~~l~~~L~~L~l~~~ 82 (540)
+||+++|.+..+.+.+|.++++|++|++++|.+.++. .+..+..++.++.... .+|. .+..+ .+|++|++++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n 107 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSN 107 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSS
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccC-CCCCEEECCCC
Confidence 4667777778888888999999999999999987653 3445555555555432 2333 35555 36677777766
Q ss_pred CCCCCCCC-C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC---ccCCCcEEEccC
Q 037604 83 PLRILPSN-F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL---HFVCPVTIDFSY 157 (540)
Q Consensus 83 ~l~~l~~~-~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~---~l~~L~~L~L~~ 157 (540)
.+..++.. + .+++|++|++++|.++.. .|..++++++|++|++++|.+.+..+..+ .+++|++|++++
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDLSHNGLSST-------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEECCSSCCSCC-------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred ccCccChhHccccCCCCEEECCCCccccc-------CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 66666532 3 566677777766666543 44556666777777777665554433322 345666666666
Q ss_pred CcCccccCCCC------------------------------CCeeEEEcccCCceec-cccccCCC--CCCEEEcccCcc
Q 037604 158 CVNLIEFPQIS------------------------------GKITRLYLGCSAIEEV-PSSIECLT--DLEVLDLMYCKR 204 (540)
Q Consensus 158 ~~~~~~~~~~~------------------------------~~l~~L~L~~~~l~~l-~~~~~~l~--~L~~L~l~~~~~ 204 (540)
|.+.+..+..+ .+++.|+++++.++.+ |.++..++ +|++|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 65543333211 2234444444444422 23333332 266666666555
Q ss_pred ccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCc------ccCc----ccCCCCCCCeEccCCCc
Q 037604 205 LKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAIT------ELPS----SFENLTGLKGLSVSDCS 274 (540)
Q Consensus 205 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~------~l~~----~~~~l~~L~~L~l~~~~ 274 (540)
.+..+..|+.+++|++|++++|.+.+..+..+..+++|++|+++++... .+|. .+..+++|++|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 5444455555666666666665555544444555555555555443221 1221 34444555555555554
Q ss_pred CCCcCCCCCCCCCCCcEEEccCC
Q 037604 275 KLDKLPDNIGNLESLHHMSAFGS 297 (540)
Q Consensus 275 ~~~~l~~~~~~l~~L~~L~l~~~ 297 (540)
+.+..+..+..+++|++|++++|
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTC
T ss_pred cCCCChhHhccccCCcEEECCCC
Confidence 44444444444444444444433
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.7e-40 Score=347.91 Aligned_cols=413 Identities=19% Similarity=0.165 Sum_probs=340.0
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILP 88 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~ 88 (540)
+||+++|.+..+.+++|.++++|++|++++|.+. ...|+.+..++ +|++|++++|.+..++
T Consensus 60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~------------------~~~p~~~~~l~-~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ------------------SFSPGSFSGLT-SLENLVAVETKLASLE 120 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------------------CCCTTSSTTCT-TCCEEECTTSCCCCSS
T ss_pred EEeCCCCcccccCHHHhhchhhcCEeECCCCccc------------------ccChhhcCCcc-cCCEEEccCCcccccc
Confidence 4677888889999999999999999999999985 44578888884 9999999999998887
Q ss_pred CC-C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCc----EEEccCCcCc
Q 037604 89 SN-F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPV----TIDFSYCVNL 161 (540)
Q Consensus 89 ~~-~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~----~L~L~~~~~~ 161 (540)
.. + .+++|++|++++|.+..+ .+|..++++++|++|++++|.+.+..+..+ .+.+|+ ++++++|.+.
T Consensus 121 ~~~~~~l~~L~~L~L~~n~l~~~------~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 121 SFPIGQLITLKKLNVAHNFIHSC------KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp SSCCTTCTTCCEEECCSSCCCCC------CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC
T ss_pred ccccCCCCCCCEEeCCCCcccce------echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc
Confidence 43 3 899999999999988742 168889999999999999988887777777 555554 7899888876
Q ss_pred cccCCCCC--CeeEEEcccCCce---------------------------------------------------------
Q 037604 162 IEFPQISG--KITRLYLGCSAIE--------------------------------------------------------- 182 (540)
Q Consensus 162 ~~~~~~~~--~l~~L~L~~~~l~--------------------------------------------------------- 182 (540)
...+..+. +++.|++++|.+.
T Consensus 195 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 274 (606)
T 3vq2_A 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274 (606)
T ss_dssp EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTC
T ss_pred eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccc
Confidence 54443333 5678887666442
Q ss_pred -eccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCc-ccCcccC
Q 037604 183 -EVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAIT-ELPSSFE 260 (540)
Q Consensus 183 -~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~ 260 (540)
.....+..+++|+.|++++|.+ ..+| .+..+++|++|++++|.. +.+| .+ .+++|+.|++++|... .+ .+.
T Consensus 275 ~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~ 347 (606)
T 3vq2_A 275 SDDIVKFHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKV 347 (606)
T ss_dssp CGGGGSCGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCC
T ss_pred cccccccccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhc
Confidence 1111256788999999999875 5566 688999999999999988 7788 45 9999999999999544 33 567
Q ss_pred CCCCCCeEccCCCcCCCc--CCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCccc-ccccCCCCCc
Q 037604 261 NLTGLKGLSVSDCSKLDK--LPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFP-RSLLGLSSLV 337 (540)
Q Consensus 261 ~l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~ 337 (540)
.+++|+.|++++|.+.+. .+..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+.+..+ ..+..+++|+
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 899999999999987655 3677888999999999999999999889999999999999999888777 5788999999
Q ss_pred EEeccCCCCCC-CChhhcCCCCCcEEEecCCCCcc--cchhccCCCCCCEEEecCCCCCCcCCCC---CCCccEEEecCC
Q 037604 338 ALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQS--LPASIKQLSQLSSLELNDCKMLQSLPEL---PLCLKYLHLRDC 411 (540)
Q Consensus 338 ~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~ 411 (540)
+|++++|.+.. .|..+..+++|++|++++|.++. +|..++.+++|++|++++|.+.+..|.. .++|++|++++|
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 99999999988 67788999999999999999885 6888999999999999999887766654 389999999999
Q ss_pred CCCCcCCCCC---CCccEEeecCCCCCCCCCCc----ccccccccccccc
Q 037604 412 KMLQSLPALP---LCLESLDLRDCNMLRSLPEL----PLCLQELDATNCN 454 (540)
Q Consensus 412 ~~l~~~~~~~---~~L~~L~l~~~~~l~~~~~~----~~~L~~L~i~~c~ 454 (540)
+..+..|..+ .+|++|++++|+.. .+|.. +.+|++|++.+++
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 8777656544 45999999999855 66652 2358888888754
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-39 Score=340.86 Aligned_cols=412 Identities=18% Similarity=0.170 Sum_probs=225.9
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILP 88 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~ 88 (540)
.||+++|++..+.+.+|.++++|++|++++|.+. ...+..+..+ .+|++|++++|.++.++
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------------------~i~~~~~~~l-~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------------------TIEDGAYQSL-SHLSTLILTGNPIQSLA 92 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC------------------EECTTTTTTC-TTCCEEECTTCCCCEEC
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCC------------------ccCcccccCc-hhCCEEeCcCCcCCccC
Confidence 4677788778888888999999999999999885 2234455566 37777777777776665
Q ss_pred CC-C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCc-ccCCCC-ccCCCcEEEccCCcCcccc
Q 037604 89 SN-F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLR-SFPSNL-HFVCPVTIDFSYCVNLIEF 164 (540)
Q Consensus 89 ~~-~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~~~~-~l~~L~~L~L~~~~~~~~~ 164 (540)
.. + .+++|++|++++|.++.+ .+..++++++|++|++++|.+.+ .+|..+ ++++|++|++++|.+....
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l-------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASL-------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCS-------TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred HhhhcCccccccccccccccccC-------CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 32 3 667777777777766642 12246677777777777766554 356666 6777777777776655443
Q ss_pred CCCCC---Ce----eEEEcccCCceeccccccCCCCCCEEEcccCc----------------------------------
Q 037604 165 PQISG---KI----TRLYLGCSAIEEVPSSIECLTDLEVLDLMYCK---------------------------------- 203 (540)
Q Consensus 165 ~~~~~---~l----~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~---------------------------------- 203 (540)
+..++ ++ +.++++.|.++.++.......+|++|++++|.
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 33222 22 45666666666554443333356666665542
Q ss_pred ------------------------cccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCccc
Q 037604 204 ------------------------RLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSF 259 (540)
Q Consensus 204 ------------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~ 259 (540)
..+..+..+..+++|++|++++|... .+|..+..+ +|++|++++|.+..+|.
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~-- 321 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT-- 321 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--
Confidence 11222333444455555555554433 344444444 55555555555554443
Q ss_pred CCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC---CccccCCCCccEEEccCCCCCCcccccccCCCCC
Q 037604 260 ENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL---PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSL 336 (540)
Q Consensus 260 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 336 (540)
..+++|+.|++++|...+..+. ..+++|++|++++|.++.. +..+..+++|++|++++|.+.+..+. +..+++|
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L 398 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQL 398 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTC
T ss_pred ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCC
Confidence 2445555555555544443332 4455555555555555543 34445555555555555554433222 5555555
Q ss_pred cEEeccCCCCCCCC--hhhcCCCCCcEEEecCCCCcc-cchhccCCCCCCEEEecCCCCC-CcCCCC---CCCccEEEec
Q 037604 337 VALHIRNFAVMEIP--QEIARLSSLIDLHIGGNNFQS-LPASIKQLSQLSSLELNDCKML-QSLPEL---PLCLKYLHLR 409 (540)
Q Consensus 337 ~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~-lp~~l~~l~~L~~L~l~~~~~~-~~~~~~---~~~L~~L~l~ 409 (540)
++|++++|.+...+ ..+..+++|++|++++|.+.. .|..+..+++|++|++++|.+. +.+|.. .++|+.|+++
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 55555555555432 234555555555555555542 3344555555566665555543 233322 2555555555
Q ss_pred CCCCCCcCCCCC---CCccEEeecCCCCCCCCCC---ccccccccccccc
Q 037604 410 DCKMLQSLPALP---LCLESLDLRDCNMLRSLPE---LPLCLQELDATNC 453 (540)
Q Consensus 410 ~~~~l~~~~~~~---~~L~~L~l~~~~~l~~~~~---~~~~L~~L~i~~c 453 (540)
+|...+..|..+ .+|++|++++|...+..+. ..++|++|++.++
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 555444334332 2355555555554433332 1234555555543
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.7e-38 Score=337.38 Aligned_cols=441 Identities=19% Similarity=0.163 Sum_probs=329.4
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccchh--hhccchhhhhcccccc---cC-CCCCccccCcEEEeecCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIER--FLSMSIEEQLSYSKVQ---LP-NGLDYLPEKLRYLHWDTY 82 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~~~~~~~~~---~~-~~~~~l~~~L~~L~l~~~ 82 (540)
+||+++|.+..+.+++|.++++|++|++++|.+.+++. +..+..++.++..... ++ ..+..+ .+|++|++++|
T Consensus 53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n 131 (680)
T 1ziw_A 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHN 131 (680)
T ss_dssp EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC-TTCCEEECCSS
T ss_pred EEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc-CCCCEEECCCC
Confidence 46777788889999999999999999999999998874 7888888888887643 33 467777 59999999999
Q ss_pred CCCCCCCC-C-CCCCceEeecCCcchhhhhccccCcCCCcc--cCCCCCCEEecCCCCCCcccCCCC-cc----------
Q 037604 83 PLRILPSN-F-KPKNLVELNLRFSKVEQLWEGEKACVPSSI--QNFKYLSMLNFEGCKSLRSFPSNL-HF---------- 147 (540)
Q Consensus 83 ~l~~l~~~-~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~--~~l~~L~~L~L~~~~~~~~~~~~~-~l---------- 147 (540)
.+..++.. + .+++|++|++++|.++.+ .+..+ ..+++|++|++++|.+.+..|..+ .+
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 132 GLSSTKLGTQVQLENLQELLLSNNKIQAL-------KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp CCSCCCCCSSSCCTTCCEEECCSSCCCCB-------CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred cccccCchhhcccccCCEEEccCCccccc-------CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 99776544 3 899999999999998753 33333 356899999999998776655544 32
Q ss_pred -----------------CCCcEEEccCCcCccccCCCCC-----CeeEEEcccCCceecc-ccccCCCCCCEEEcccCcc
Q 037604 148 -----------------VCPVTIDFSYCVNLIEFPQISG-----KITRLYLGCSAIEEVP-SSIECLTDLEVLDLMYCKR 204 (540)
Q Consensus 148 -----------------~~L~~L~L~~~~~~~~~~~~~~-----~l~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~ 204 (540)
++|+.|++++|.+.+..+..+. ++++|++++|.++.++ ..+..+++|++|++++|.+
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 4567777777776665555442 3788888888888654 5677888888888888877
Q ss_pred ccccchhcCCCCCCcEEeccCCcCCC-----cCch----hhhCCCCCCEEEcCCCCCcccCc-ccCCCCCC---------
Q 037604 205 LKRISTRFCKLRSLVDLCLNGCLNLE-----RFPE----ILEKMEHLKCINLDRTAITELPS-SFENLTGL--------- 265 (540)
Q Consensus 205 ~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~----~l~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L--------- 265 (540)
.+..|..+..+++|++|++++|...+ .+|. .+..+++|++|++++|.++.++. .+..+++|
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 76666667777777777776543221 1221 45556666666666666554332 24444444
Q ss_pred -------------------CeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCC-CC-ccccCCCCccEEEccCCCCCC
Q 037604 266 -------------------KGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQ-LP-SSVADSNVLGILDFSRCKGLE 324 (540)
Q Consensus 266 -------------------~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-l~-~~~~~l~~L~~L~l~~~~~~~ 324 (540)
+.|++++|.+.+..|..+..+++|+.|++++|.+++ ++ ..+..+++|++|++++|.+.+
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 455555555555667788899999999999999975 54 678899999999999999887
Q ss_pred cccccccCCCCCcEEeccCCCCCC---CChhhcCCCCCcEEEecCCCCcccch-hccCCCCCCEEEecCCCCCCc----C
Q 037604 325 SFPRSLLGLSSLVALHIRNFAVME---IPQEIARLSSLIDLHIGGNNFQSLPA-SIKQLSQLSSLELNDCKMLQS----L 396 (540)
Q Consensus 325 ~~~~~l~~~~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~----~ 396 (540)
..+..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|+++.++. .+..+++|++|++++|.+.+. +
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence 777888899999999999998763 77889999999999999999998775 478899999999999986542 1
Q ss_pred C-------CCCCCccEEEecCCCCCCcCCC----CCCCccEEeecCCCCCCCCCC---ccccccccccccccccccC
Q 037604 397 P-------ELPLCLKYLHLRDCKMLQSLPA----LPLCLESLDLRDCNMLRSLPE---LPLCLQELDATNCNRLQSL 459 (540)
Q Consensus 397 ~-------~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~i~~c~~l~~~ 459 (540)
| ...++|+.|++++|... .+|. .+.+|+.|++++|......+. ..++|+.|++.++ .++.+
T Consensus 525 ~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~ 599 (680)
T 1ziw_A 525 PGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSV 599 (680)
T ss_dssp TTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBC
T ss_pred cCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCcc
Confidence 1 22378999999999754 5664 234699999999876643332 2367899999885 45543
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=349.40 Aligned_cols=432 Identities=19% Similarity=0.154 Sum_probs=211.4
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccc-cc--hhhhccchhhhhcccccc----cCCCCCccccCcEEEeecC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFY-GI--ERFLSMSIEEQLSYSKVQ----LPNGLDYLPEKLRYLHWDT 81 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~-~~--~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~L~~L~l~~ 81 (540)
.||+++|.+..+.+.+|.++++|++|++++|... .+ ..+..+..++.++.+... .|+.+..+ .+|++|++++
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~ 106 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL-FHLFELRLYF 106 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC-SSCCCEECTT
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC-cccCEeeCcC
Confidence 4566677777888888888888888888888543 11 123333344444333221 23344444 2455555555
Q ss_pred CCCCC-CCCC--C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-cc--CCCcEEE
Q 037604 82 YPLRI-LPSN--F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HF--VCPVTID 154 (540)
Q Consensus 82 ~~l~~-l~~~--~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l--~~L~~L~ 154 (540)
|.+.. ++.. + .+++|++|+|++|.++.+. .+..|+++++|++|++++|.+.+..+..+ .+ ++|+.|+
T Consensus 107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC------CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred CCCCcccccCccccccCCCCEEECCCCcccccc------cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 54432 2221 1 4444555555554443210 12334455555555555544444444444 33 4455555
Q ss_pred ccCCcCccccCCCCC---------CeeEEEcccCCce-eccccc------------------------------------
Q 037604 155 FSYCVNLIEFPQISG---------KITRLYLGCSAIE-EVPSSI------------------------------------ 188 (540)
Q Consensus 155 L~~~~~~~~~~~~~~---------~l~~L~L~~~~l~-~l~~~~------------------------------------ 188 (540)
+++|.+.+..+..++ .++.|+++.|.+. .++..+
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 555544443332211 1466666555433 111111
Q ss_pred cC--CCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCccc-CcccCCCCCC
Q 037604 189 EC--LTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITEL-PSSFENLTGL 265 (540)
Q Consensus 189 ~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L 265 (540)
.. .++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+ |..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 01 14566666666665555555566666666666666666555555666666666666666666544 4456666666
Q ss_pred CeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCccccc----------------
Q 037604 266 KGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRS---------------- 329 (540)
Q Consensus 266 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~---------------- 329 (540)
+.|++++|.+....+..+..+++|++|++++|.++.++. +++|+.|++++|.+.. +|..
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~-l~~~~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVT-LPKINLTANLIHLSENRLEN 415 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCC-CCCCCTTCCEEECCSCCCCS
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCccc-ccccccccceeecccCcccc
Confidence 666666666555445556666666666666666655432 3444555555444331 2211
Q ss_pred ------ccCCCCCcEEeccCCCCCCCCh--hhcCCCCCcEEEecCCCCccc------chhccCCCCCCEEEecCCCCCCc
Q 037604 330 ------LLGLSSLVALHIRNFAVMEIPQ--EIARLSSLIDLHIGGNNFQSL------PASIKQLSQLSSLELNDCKMLQS 395 (540)
Q Consensus 330 ------l~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~l------p~~l~~l~~L~~L~l~~~~~~~~ 395 (540)
+..+++|++|++++|.+..++. .+..+++|+.|++++|.++.. +..+..+++|+.|++++|.+.+.
T Consensus 416 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 495 (844)
T 3j0a_A 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495 (844)
T ss_dssp STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC
T ss_pred CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc
Confidence 1233444444444444433211 122234444444444443211 12233444444444444443333
Q ss_pred CCCC---CCCccEEEecCCCCCCcCCCCC-CCccEEeecCCCCCCCCCCcccccccccccc
Q 037604 396 LPEL---PLCLKYLHLRDCKMLQSLPALP-LCLESLDLRDCNMLRSLPELPLCLQELDATN 452 (540)
Q Consensus 396 ~~~~---~~~L~~L~l~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~ 452 (540)
.|.. .++|+.|++++|...+..+..+ .+|+.|++++|...+..|..+.+|+.|++.+
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~ 556 (844)
T 3j0a_A 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITH 556 (844)
T ss_dssp CTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEE
T ss_pred ChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecC
Confidence 3322 2455555555554332222222 2355555555555555555444555555554
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-38 Score=335.59 Aligned_cols=381 Identities=17% Similarity=0.192 Sum_probs=223.2
Q ss_pred CCCCCccccCcEEEeecCCCCCCCCCC-C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCc-c
Q 037604 64 PNGLDYLPEKLRYLHWDTYPLRILPSN-F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLR-S 140 (540)
Q Consensus 64 ~~~~~~l~~~L~~L~l~~~~l~~l~~~-~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~-~ 140 (540)
|..+..+ ++|++|++++|.++.++.. + .+++|++|++++|.++.+ .|..|+++++|++|++++|.+.+ .
T Consensus 43 ~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 43 HGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-------SSSWFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp SSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-------CHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred hhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-------CHHHhccCCCCcEEECCCCcccccc
Confidence 3344444 2455555555555444321 2 444555555555544432 22234455555555555544433 2
Q ss_pred cCCCC-ccCCCcEEEccCCcCccccC-C---CCCCeeEEEcccCCcee-ccccccCCCCCCEEEcccCccccccchh-cC
Q 037604 141 FPSNL-HFVCPVTIDFSYCVNLIEFP-Q---ISGKITRLYLGCSAIEE-VPSSIECLTDLEVLDLMYCKRLKRISTR-FC 213 (540)
Q Consensus 141 ~~~~~-~l~~L~~L~L~~~~~~~~~~-~---~~~~l~~L~L~~~~l~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~ 213 (540)
.|..+ .+++|++|++++|...+.++ . .+.++++|++++|.++. +|..+..+++|++|++++|... .+|.. +.
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~ 193 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFAD 193 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHH
T ss_pred hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHh
Confidence 33333 44555555555544333332 1 12233445554444442 3444444444555555444322 22221 23
Q ss_pred CCCCCcEEeccCCcCCC---------------------------cCc----hhhhCCCCCCEEEcCCCCCcccC------
Q 037604 214 KLRSLVDLCLNGCLNLE---------------------------RFP----EILEKMEHLKCINLDRTAITELP------ 256 (540)
Q Consensus 214 ~l~~L~~L~l~~~~~~~---------------------------~~~----~~l~~l~~L~~L~l~~~~l~~l~------ 256 (540)
.+++|++|++++|.+.+ ..+ ..+..+++|+.++++++.+..++
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 34444455544444333 211 22234455555555555443221
Q ss_pred -cccCCCCCCCeEccCCCcCCCc-----CCCCCCCCCCCcEEEccCCCCCCCCccc-cCCCCccEEEccCCCCCCcccc-
Q 037604 257 -SSFENLTGLKGLSVSDCSKLDK-----LPDNIGNLESLHHMSAFGSAISQLPSSV-ADSNVLGILDFSRCKGLESFPR- 328 (540)
Q Consensus 257 -~~~~~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~l~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~- 328 (540)
..+..+.+++.|.+.++.+... ++..+...++|+.|++++|.++.+|..+ ..+++|++|++++|.+.+.+|.
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccc
Confidence 1234455566666655433221 1111123467888999999888888776 4689999999999998876643
Q ss_pred --cccCCCCCcEEeccCCCCCCCC---hhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCCcCC-CCCCC
Q 037604 329 --SLLGLSSLVALHIRNFAVMEIP---QEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLP-ELPLC 402 (540)
Q Consensus 329 --~l~~~~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~ 402 (540)
.++.+++|++|++++|.+.+++ ..+..+++|++|++++|+++.+|..+..+++|++|++++|.+. .+| ..+++
T Consensus 354 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~ 432 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT 432 (549)
T ss_dssp HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTT
T ss_pred hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccchhcCC
Confidence 3678889999999999988865 3478899999999999999999988888899999999999754 444 34578
Q ss_pred ccEEEecCCCCCCcCCCCCCCccEEeecCCCCCCCCCC--ccccccccccccccccc
Q 037604 403 LKYLHLRDCKMLQSLPALPLCLESLDLRDCNMLRSLPE--LPLCLQELDATNCNRLQ 457 (540)
Q Consensus 403 L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~i~~c~~l~ 457 (540)
|+.|++++|... .++..+.+|++|++++|... .+|. ..++|++|+++++ .++
T Consensus 433 L~~L~Ls~N~l~-~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N-~l~ 486 (549)
T 2z81_A 433 LEVLDVSNNNLD-SFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRN-QLK 486 (549)
T ss_dssp CSEEECCSSCCS-CCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSS-CCC
T ss_pred ceEEECCCCChh-hhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCC-ccC
Confidence 999999999754 45566778999999998654 6765 3457888888875 444
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.2e-39 Score=342.73 Aligned_cols=334 Identities=16% Similarity=0.223 Sum_probs=275.8
Q ss_pred CCCcccCCCCCCEEecCCCCCCcc-----------------cCCCC---ccCCCcEEEccCCcCccccCCCCC---CeeE
Q 037604 117 VPSSIQNFKYLSMLNFEGCKSLRS-----------------FPSNL---HFVCPVTIDFSYCVNLIEFPQISG---KITR 173 (540)
Q Consensus 117 lp~~~~~l~~L~~L~L~~~~~~~~-----------------~~~~~---~l~~L~~L~L~~~~~~~~~~~~~~---~l~~ 173 (540)
+|..++++++|++|++++|.+.+. +|..+ .+++|++|++++|.+.+.+|..++ +|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 788899999999999999988775 78776 489999999999998888887655 5599
Q ss_pred EEcccCC-ce--eccccccCC------CCCCEEEcccCccccccch--hcCCCCCCcEEeccCCcCCCcCchhhhCCCCC
Q 037604 174 LYLGCSA-IE--EVPSSIECL------TDLEVLDLMYCKRLKRIST--RFCKLRSLVDLCLNGCLNLERFPEILEKMEHL 242 (540)
Q Consensus 174 L~L~~~~-l~--~l~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 242 (540)
|++++|. ++ .+|..++.+ ++|++|++++|.+. .+|. .++++++|++|++++|.+.+.+| .++.+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9998887 77 488877776 89999999999876 7887 89999999999999988887888 88889999
Q ss_pred CEEEcCCCCCcccCcccCCCCC-CCeEccCCCcCCCcCCCCCCCCC--CCcEEEccCCCCCCC-Ccccc-------CCCC
Q 037604 243 KCINLDRTAITELPSSFENLTG-LKGLSVSDCSKLDKLPDNIGNLE--SLHHMSAFGSAISQL-PSSVA-------DSNV 311 (540)
Q Consensus 243 ~~L~l~~~~l~~l~~~~~~l~~-L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~~~l~~l-~~~~~-------~l~~ 311 (540)
++|++++|.++.+|..+..+++ |++|++++|.+. .+|..+...+ +|++|++++|.+++. |..+. .+++
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 9999999999999988999998 999999998877 7787776654 899999999998874 66666 6789
Q ss_pred ccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcC--------CCCCcEEEecCCCCcccchhcc--CCCC
Q 037604 312 LGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIAR--------LSSLIDLHIGGNNFQSLPASIK--QLSQ 381 (540)
Q Consensus 312 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--------l~~L~~L~l~~~~l~~lp~~l~--~l~~ 381 (540)
|++|++++|.+....+..+..+++|++|++++|.+..+|..... +++|+.|++++|+++.+|..+. .+++
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 514 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCC
Confidence 99999999998743333455689999999999999887765433 2289999999999999998886 8999
Q ss_pred CCEEEecCCCCCCcCCCC---CCCccEEEec------CCCCCCcCCCCC---CCccEEeecCCCCCCCCCC-cccccccc
Q 037604 382 LSSLELNDCKMLQSLPEL---PLCLKYLHLR------DCKMLQSLPALP---LCLESLDLRDCNMLRSLPE-LPLCLQEL 448 (540)
Q Consensus 382 L~~L~l~~~~~~~~~~~~---~~~L~~L~l~------~~~~l~~~~~~~---~~L~~L~l~~~~~l~~~~~-~~~~L~~L 448 (540)
|++|++++|++.+ +|.. .++|+.|+++ +|...+.+|..+ .+|++|++++|.. +.+|. ..++|++|
T Consensus 515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L 592 (636)
T 4eco_A 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVL 592 (636)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEE
T ss_pred cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEE
Confidence 9999999998776 7743 3889999995 455666777654 4599999999987 77776 55689999
Q ss_pred ccccccc
Q 037604 449 DATNCNR 455 (540)
Q Consensus 449 ~i~~c~~ 455 (540)
++++++-
T Consensus 593 ~Ls~N~l 599 (636)
T 4eco_A 593 DIKDNPN 599 (636)
T ss_dssp ECCSCTT
T ss_pred ECcCCCC
Confidence 9988653
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=338.38 Aligned_cols=373 Identities=17% Similarity=0.161 Sum_probs=225.9
Q ss_pred EEEeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCC-CC
Q 037604 7 GIFLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYP-LR 85 (540)
Q Consensus 7 ~i~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~-l~ 85 (540)
+...|.++++...++. -.++|++|++++|.+. ...+..+..+ .+|++|++++|. ..
T Consensus 6 ~~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~------------------~i~~~~~~~l-~~L~~LdLs~n~~~~ 62 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIR------------------TVTASSFPFL-EQLQLLELGSQYTPL 62 (844)
T ss_dssp TEEEEESCCCSSCCCS----SCTTCCEEEEESCCCC------------------EECSSSCSSC-CSCSEEEECTTCCCC
T ss_pred ceEEEccCCCCCCCCC----CCCCcCEEECCCCcCC------------------ccChhHCccc-ccCeEEeCCCCCCcc
Confidence 4567788887788876 4689999999999996 4445666777 477777777773 34
Q ss_pred CC-CCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCC--C-ccCCCcEEEccCCcC
Q 037604 86 IL-PSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSN--L-HFVCPVTIDFSYCVN 160 (540)
Q Consensus 86 ~l-~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~--~-~l~~L~~L~L~~~~~ 160 (540)
.+ |..+ .+++|++|+|++|.+..+ .|..|+++++|++|++++|.+.+..|.. + .+++|++|++++|.+
T Consensus 63 ~i~~~~f~~L~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 63 TIDKEAFRNLPNLRILDLGSSKIYFL-------HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135 (844)
T ss_dssp EECTTTTSSCTTCCEEECTTCCCCEE-------CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCccc-------CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc
Confidence 55 3334 677777777777777654 5667777777777777777766655544 4 777777777777766
Q ss_pred ccccC----CCCCCeeEEEcccCCceec-cccccCC--CCCCEEEcccCccccccchhcCCCCC------CcEEeccCCc
Q 037604 161 LIEFP----QISGKITRLYLGCSAIEEV-PSSIECL--TDLEVLDLMYCKRLKRISTRFCKLRS------LVDLCLNGCL 227 (540)
Q Consensus 161 ~~~~~----~~~~~l~~L~L~~~~l~~l-~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~ 227 (540)
.+..+ ..+.+|++|++++|.++.+ +..+..+ ++|+.|++++|.+.+..+..++.+.+ |++|++++|.
T Consensus 136 ~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred cccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 55433 2345567777777776633 3445444 56666666666666555554444443 6666666664
Q ss_pred CCCcCchhhh------------------------------------C--CCCCCEEEcCCCCCccc-CcccCCCCCCCeE
Q 037604 228 NLERFPEILE------------------------------------K--MEHLKCINLDRTAITEL-PSSFENLTGLKGL 268 (540)
Q Consensus 228 ~~~~~~~~l~------------------------------------~--l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L 268 (540)
..+..+..+. . .++|+.|++++|.+..+ +..+..+++|+.|
T Consensus 216 l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 295 (844)
T 3j0a_A 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295 (844)
T ss_dssp SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEE
T ss_pred CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEE
Confidence 4333222221 1 14566666666666543 3345666666666
Q ss_pred ccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC-CccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCC
Q 037604 269 SVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL-PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVM 347 (540)
Q Consensus 269 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 347 (540)
++++|.+.+..+..+..+++|++|++++|.++++ +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus 296 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred ECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 6666666665565666666666666666666655 455666666666666666655555555666666666666666655
Q ss_pred CCChhhcCCCCCcEEEecCCCCcccch----------------------hccCCCCCCEEEecCCCCCCcCC----CCCC
Q 037604 348 EIPQEIARLSSLIDLHIGGNNFQSLPA----------------------SIKQLSQLSSLELNDCKMLQSLP----ELPL 401 (540)
Q Consensus 348 ~~~~~~~~l~~L~~L~l~~~~l~~lp~----------------------~l~~l~~L~~L~l~~~~~~~~~~----~~~~ 401 (540)
.++. +++|+.|++++|+++.+|. .+..+++|+.|++++|.+.+..+ ...+
T Consensus 376 ~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 451 (844)
T 3j0a_A 376 TIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451 (844)
T ss_dssp CCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred cccC----CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC
Confidence 4332 3344444444444333321 12355666666666665543211 2235
Q ss_pred CccEEEecCCCC
Q 037604 402 CLKYLHLRDCKM 413 (540)
Q Consensus 402 ~L~~L~l~~~~~ 413 (540)
+|+.|++++|..
T Consensus 452 ~L~~L~Ls~N~l 463 (844)
T 3j0a_A 452 SLEQLFLGENML 463 (844)
T ss_dssp TCCBCEEESCCC
T ss_pred ccccccCCCCcc
Confidence 555555555543
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9e-38 Score=330.06 Aligned_cols=401 Identities=21% Similarity=0.214 Sum_probs=329.2
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILP 88 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~ 88 (540)
+||+++|++..+.+++|+++++|++|++++|.+. ...++.+..+ .+|++|++++|.++.++
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~------------------~~~~~~~~~l-~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------------------SLALGAFSGL-SSLQKLVAVETNLASLE 116 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------------------EECTTTTTTC-TTCCEEECTTSCCCCST
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCC------------------ccCHhhhcCc-cccccccccccccccCC
Confidence 4677788888999999999999999999999985 3445678888 59999999999999888
Q ss_pred CC-C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCC----cEEEccCCcCc
Q 037604 89 SN-F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCP----VTIDFSYCVNL 161 (540)
Q Consensus 89 ~~-~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L----~~L~L~~~~~~ 161 (540)
.. + .+++|++|++++|.++.+ .+|..++++++|++|++++|.+.+..+..+ .+.+| +.+++++|.+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~------~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 117 NFPIGHLKTLKELNVAHNLIQSF------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp TCSCTTCTTCCEEECCSSCCCCC------CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred CccccccccccEEecCCCcccee------cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce
Confidence 73 3 899999999999988742 167889999999999999988877666767 77777 88999998877
Q ss_pred cccCCCCC--CeeEEEcccC----------------------------------------------------------Cc
Q 037604 162 IEFPQISG--KITRLYLGCS----------------------------------------------------------AI 181 (540)
Q Consensus 162 ~~~~~~~~--~l~~L~L~~~----------------------------------------------------------~l 181 (540)
...+..+. +++.|+++.+ .+
T Consensus 191 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 270 (570)
T 2z63_A 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270 (570)
T ss_dssp EECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEE
T ss_pred ecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhh
Confidence 66655444 3577766544 11
Q ss_pred e-eccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccC
Q 037604 182 E-EVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFE 260 (540)
Q Consensus 182 ~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~ 260 (540)
. .++..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+...... .
T Consensus 271 ~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~ 344 (570)
T 2z63_A 271 LDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-V 344 (570)
T ss_dssp ESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-C
T ss_pred hhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-c
Confidence 1 33456777899999999998754 678878888 9999999998766 5554 5789999999999988744333 7
Q ss_pred CCCCCCeEccCCCcCCCcC--CCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCccc-ccccCCCCCc
Q 037604 261 NLTGLKGLSVSDCSKLDKL--PDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFP-RSLLGLSSLV 337 (540)
Q Consensus 261 ~l~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~ 337 (540)
.+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+++..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 8899999999998876543 566778999999999999999987779999999999999999777655 4678999999
Q ss_pred EEeccCCCCCC-CChhhcCCCCCcEEEecCCCCc--ccchhccCCCCCCEEEecCCCCCCcCCCC---CCCccEEEecCC
Q 037604 338 ALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQ--SLPASIKQLSQLSSLELNDCKMLQSLPEL---PLCLKYLHLRDC 411 (540)
Q Consensus 338 ~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~ 411 (540)
+|++++|.+.. .+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+..|.. .++|++|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 99999999988 6677889999999999999986 68888999999999999999887766654 389999999999
Q ss_pred CCCCcCCCCC---CCccEEeecCCCCCCCCCC
Q 037604 412 KMLQSLPALP---LCLESLDLRDCNMLRSLPE 440 (540)
Q Consensus 412 ~~l~~~~~~~---~~L~~L~l~~~~~l~~~~~ 440 (540)
...+..+..+ .+|+.|++++|+.....|.
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8665544433 4699999999998877664
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.9e-38 Score=337.72 Aligned_cols=393 Identities=16% Similarity=0.197 Sum_probs=308.2
Q ss_pred ccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEee-cCCCCCCC-CCC----------------
Q 037604 29 SNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHW-DTYPLRIL-PSN---------------- 90 (540)
Q Consensus 29 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l-~~~~l~~l-~~~---------------- 90 (540)
..++.|+|+++.+. +.+|..+..++ .|++|++ ++|.+... +..
T Consensus 323 ~~V~~L~Ls~~~L~------------------G~ip~~l~~L~-~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~l 383 (876)
T 4ecn_A 323 GRVTGLSLAGFGAK------------------GRVPDAIGQLT-ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383 (876)
T ss_dssp SCEEEEECTTTCCE------------------EEECGGGGGCT-TCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHH
T ss_pred CCEEEEECccCCCC------------------CcCchHHhccc-cceEeeecccccccccccccccccccccchhHHHHH
Confidence 57899999999987 78999999995 9999999 77754211 100
Q ss_pred ------------------------------------CCCCCceEeecCC--cchhhhhccccCcCCCcccCCCCCCEEec
Q 037604 91 ------------------------------------FKPKNLVELNLRF--SKVEQLWEGEKACVPSSIQNFKYLSMLNF 132 (540)
Q Consensus 91 ------------------------------------~~~~~L~~L~Ls~--n~i~~l~~g~~~~lp~~~~~l~~L~~L~L 132 (540)
.....++.+.+.. |.++. +|..++++++|++|+|
T Consensus 384 r~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~--------IP~~l~~L~~L~~L~L 455 (876)
T 4ecn_A 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF--------ISKAIQRLTKLQIIYF 455 (876)
T ss_dssp HTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--------ECGGGGGCTTCCEEEE
T ss_pred HHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc--------hhHHHhcCCCCCEEEC
Confidence 0112233333332 45543 7888999999999999
Q ss_pred CCCCCCc-----------------ccCCCC---ccCCCcEEEccCCcCccccCCCC---CCeeEEEcccCC-cee--ccc
Q 037604 133 EGCKSLR-----------------SFPSNL---HFVCPVTIDFSYCVNLIEFPQIS---GKITRLYLGCSA-IEE--VPS 186 (540)
Q Consensus 133 ~~~~~~~-----------------~~~~~~---~l~~L~~L~L~~~~~~~~~~~~~---~~l~~L~L~~~~-l~~--l~~ 186 (540)
++|.+.+ .+|..+ .+++|++|++++|.+.+.+|..+ .+|+.|++++|. ++. +|.
T Consensus 456 s~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~ 535 (876)
T 4ecn_A 456 ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535 (876)
T ss_dssp ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred cCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH
Confidence 9998887 378776 68999999999999888888644 466999998887 774 776
Q ss_pred cccCCC-------CCCEEEcccCccccccch--hcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCc
Q 037604 187 SIECLT-------DLEVLDLMYCKRLKRIST--RFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPS 257 (540)
Q Consensus 187 ~~~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~ 257 (540)
.++.++ +|++|++++|.+. .+|. .++++++|++|++++|.+. .+| .++.+++|+.|++++|.++.+|.
T Consensus 536 ~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~ 612 (876)
T 4ecn_A 536 DWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPE 612 (876)
T ss_dssp HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCT
T ss_pred HHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchH
Confidence 665554 9999999998877 7887 8999999999999998876 777 78899999999999999999998
Q ss_pred ccCCCCC-CCeEccCCCcCCCcCCCCCCCCCC--CcEEEccCCCCCCCCcc----cc--CCCCccEEEccCCCCCCcccc
Q 037604 258 SFENLTG-LKGLSVSDCSKLDKLPDNIGNLES--LHHMSAFGSAISQLPSS----VA--DSNVLGILDFSRCKGLESFPR 328 (540)
Q Consensus 258 ~~~~l~~-L~~L~l~~~~~~~~l~~~~~~l~~--L~~L~l~~~~l~~l~~~----~~--~l~~L~~L~l~~~~~~~~~~~ 328 (540)
.+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.++. +. .+++|+.|++++|.+. .+|.
T Consensus 613 ~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~ 690 (876)
T 4ecn_A 613 DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPT 690 (876)
T ss_dssp TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCH
T ss_pred HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCH
Confidence 8888988 999999998876 77877766654 99999999988765322 22 3458999999999877 4555
Q ss_pred cc-cCCCCCcEEeccCCCCCCCChhhcCC--------CCCcEEEecCCCCcccchhcc--CCCCCCEEEecCCCCCCcCC
Q 037604 329 SL-LGLSSLVALHIRNFAVMEIPQEIARL--------SSLIDLHIGGNNFQSLPASIK--QLSQLSSLELNDCKMLQSLP 397 (540)
Q Consensus 329 ~l-~~~~~L~~L~l~~~~~~~~~~~~~~l--------~~L~~L~l~~~~l~~lp~~l~--~l~~L~~L~l~~~~~~~~~~ 397 (540)
.+ ..+++|+.|++++|.+..+|..+... ++|+.|++++|+++.+|..+. .+++|+.|++++|.+.+ +|
T Consensus 691 ~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp 769 (876)
T 4ecn_A 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FP 769 (876)
T ss_dssp HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cc
Confidence 44 47899999999999998888765443 389999999999999998886 89999999999998766 66
Q ss_pred CC---CCCccEEEecC------CCCCCcCCCCC---CCccEEeecCCCCCCCCCC-ccccccccccccccc
Q 037604 398 EL---PLCLKYLHLRD------CKMLQSLPALP---LCLESLDLRDCNMLRSLPE-LPLCLQELDATNCNR 455 (540)
Q Consensus 398 ~~---~~~L~~L~l~~------~~~l~~~~~~~---~~L~~L~l~~~~~l~~~~~-~~~~L~~L~i~~c~~ 455 (540)
.. .++|+.|++++ |...+.+|..+ .+|+.|++++|.. +.+|. ..++|+.|++++|+-
T Consensus 770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence 43 38899999976 55566777654 4599999999987 78876 556899999988753
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=331.21 Aligned_cols=409 Identities=16% Similarity=0.145 Sum_probs=279.9
Q ss_pred eecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCCC
Q 037604 10 LDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILPS 89 (540)
Q Consensus 10 L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~~ 89 (540)
||+++|.+..+.+++|.++++|++|++++|.+. ...|+.+..+ .+|++|++++|.++.+|.
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~------------------~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~ 86 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQ------------------YLDISVFKFN-QELEYLDLSHNKLVKISC 86 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC------------------EEEGGGGTTC-TTCCEEECCSSCCCEEEC
T ss_pred EECCCCcccccChhhccccccccEEecCCCccC------------------CcChHHhhcc-cCCCEEecCCCceeecCc
Confidence 444455455555555555666666666655553 2335566666 377777777777777776
Q ss_pred CCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCC--cEEEccCCcC--cccc
Q 037604 90 NFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCP--VTIDFSYCVN--LIEF 164 (540)
Q Consensus 90 ~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L--~~L~L~~~~~--~~~~ 164 (540)
. .+++|++|++++|.++.+ . +|..++++++|++|++++|.+.+ ..+ .+++| ++|++++|.+ .+..
T Consensus 87 ~-~l~~L~~L~L~~N~l~~~-----~-~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 87 H-PTVNLKHLDLSFNAFDAL-----P-ICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp C-CCCCCSEEECCSSCCSSC-----C-CCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred c-ccCCccEEeccCCccccc-----c-chhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccc
Confidence 6 677777777777777642 0 45677777777777777776654 223 55666 7777777776 5566
Q ss_pred CCCCCCee----EEEcccCCce-ecc-ccccCCCCCCEEEcccCc-------cccccchhcCCCCCCcEEeccCCcCCCc
Q 037604 165 PQISGKIT----RLYLGCSAIE-EVP-SSIECLTDLEVLDLMYCK-------RLKRISTRFCKLRSLVDLCLNGCLNLER 231 (540)
Q Consensus 165 ~~~~~~l~----~L~L~~~~l~-~l~-~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 231 (540)
|..+..++ .++++.|.+. .++ ..+..+++|+.|++++|. ..+.++ .+..+++|++|++++|...+.
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHH
Confidence 66666542 3444555544 222 345667788888888775 444454 477788888888887765543
Q ss_pred Cchhh---hCCCCCCEEEcCCCCCc-ccCccc-----CCCCCCCeEccCCCcCCCcCC-CCCCCC---CCCcEEEccCCC
Q 037604 232 FPEIL---EKMEHLKCINLDRTAIT-ELPSSF-----ENLTGLKGLSVSDCSKLDKLP-DNIGNL---ESLHHMSAFGSA 298 (540)
Q Consensus 232 ~~~~l---~~l~~L~~L~l~~~~l~-~l~~~~-----~~l~~L~~L~l~~~~~~~~l~-~~~~~l---~~L~~L~l~~~~ 298 (540)
.+..+ ...++|++|++++|.++ .+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc
Confidence 22211 12458888888888877 777776 7788888888887766 444 223222 568888888888
Q ss_pred CCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCC---CChhhcCCCCCcEEEecCCCCcc-cch
Q 037604 299 ISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVME---IPQEIARLSSLIDLHIGGNNFQS-LPA 374 (540)
Q Consensus 299 l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~l~~-lp~ 374 (540)
+...+. ...+++|++|++++|.+.+..|..++.+++|++|++++|.+.+ +|..+..+++|++|++++|.++. +|.
T Consensus 314 l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 314 MVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred cccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence 766542 2567888888888888888788888888888888888888886 44567888888888888888876 776
Q ss_pred h-ccCCCCCCEEEecCCCCCCcCCCCC-CCccEEEecCCCCCCcCCCC---CCCccEEeecCCCCCCCCCCc----cccc
Q 037604 375 S-IKQLSQLSSLELNDCKMLQSLPELP-LCLKYLHLRDCKMLQSLPAL---PLCLESLDLRDCNMLRSLPEL----PLCL 445 (540)
Q Consensus 375 ~-l~~l~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~~~~l~~~~~~----~~~L 445 (540)
. +..+++|++|++++|.+.+.+|..+ ++|+.|++++|... .+|.. +.+|++|++++|... .+|.. .++|
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 470 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL 470 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred chhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence 4 6778888888888888777766544 68888888888644 66653 345888888888655 55542 3457
Q ss_pred cccccccc
Q 037604 446 QELDATNC 453 (540)
Q Consensus 446 ~~L~i~~c 453 (540)
++|++.++
T Consensus 471 ~~L~l~~N 478 (520)
T 2z7x_B 471 QKIWLHTN 478 (520)
T ss_dssp CEEECCSS
T ss_pred cEEECcCC
Confidence 77777664
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.8e-37 Score=320.89 Aligned_cols=416 Identities=16% Similarity=0.161 Sum_probs=284.5
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILP 88 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~ 88 (540)
+||+++|++..+.+.+|.++++|++|++++|.+. ...|+.+..+ .+|++|++++|.+..++
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------------------~~~~~~~~~l-~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRIN------------------TIEGDAFYSL-GSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC------------------EECTTTTTTC-TTCCEEECTTSCCCSCC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcC------------------ccChhhcccc-ccCCEEECCCCccCccC
Confidence 5677888888898999999999999999999986 3445667777 48888888888887777
Q ss_pred CC-C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCC-CC-ccCCCcEEEccCCcCcccc
Q 037604 89 SN-F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPS-NL-HFVCPVTIDFSYCVNLIEF 164 (540)
Q Consensus 89 ~~-~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~-~~-~l~~L~~L~L~~~~~~~~~ 164 (540)
.. + .+++|++|++++|.++.+ . .|..++++++|++|++++|...+.+|. .+ .+++|++|++++|.+.+..
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~-----~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTL-----G-VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSS-----C-SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred HHHhccCCCCcEEECCCCccccc-----c-hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence 64 3 788888888888887642 0 456778888888888888776666663 45 7888888888888777666
Q ss_pred CCCCC---CeeEEEcccCCceeccccc-cCCCCCCEEEcccCccccc---------------------------c----c
Q 037604 165 PQISG---KITRLYLGCSAIEEVPSSI-ECLTDLEVLDLMYCKRLKR---------------------------I----S 209 (540)
Q Consensus 165 ~~~~~---~l~~L~L~~~~l~~l~~~~-~~l~~L~~L~l~~~~~~~~---------------------------~----~ 209 (540)
|..++ ++++|+++.+.+..+|..+ ..+++|++|++++|.+.+. . +
T Consensus 165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 65443 3366666666655554432 3456666666666554431 1 1
Q ss_pred hhcCCCCCCcEEeccCCcCCCc--C----chhhhCCCCCCEEEcCCCCCcccC------cccCCCCCCCeEccCCCcCCC
Q 037604 210 TRFCKLRSLVDLCLNGCLNLER--F----PEILEKMEHLKCINLDRTAITELP------SSFENLTGLKGLSVSDCSKLD 277 (540)
Q Consensus 210 ~~l~~l~~L~~L~l~~~~~~~~--~----~~~l~~l~~L~~L~l~~~~l~~l~------~~~~~l~~L~~L~l~~~~~~~ 277 (540)
..+..+++|+.+++++|...+. + ...+..+.+++.|++.++.+.... ..+...++|+.|++++|.+.
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence 2234566778888887764431 1 123456677888887777655321 11233457888888876643
Q ss_pred cCCCCC-CCCCCCcEEEccCCCCCCC-C---ccccCCCCccEEEccCCCCCCccc--ccccCCCCCcEEeccCCCCCCCC
Q 037604 278 KLPDNI-GNLESLHHMSAFGSAISQL-P---SSVADSNVLGILDFSRCKGLESFP--RSLLGLSSLVALHIRNFAVMEIP 350 (540)
Q Consensus 278 ~l~~~~-~~l~~L~~L~l~~~~l~~l-~---~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~ 350 (540)
.+|..+ ..+++|++|++++|.+++. | ..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|.+..+|
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 403 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC
Confidence 556554 4677888888888877753 2 235677788888888887655422 34677788888888888888887
Q ss_pred hhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCCcCCCCCCCccEEEecCCCCCCcCCCC--CCCccEEe
Q 037604 351 QEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLPELPLCLKYLHLRDCKMLQSLPAL--PLCLESLD 428 (540)
Q Consensus 351 ~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~L~~L~ 428 (540)
..+..+++|++|++++|+++.+|..+ .++|++|++++|.+.+ ++...++|++|++++|.. +.+|.. +.+|+.|+
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~-~~~~l~~L~~L~Ls~N~l-~~ip~~~~l~~L~~L~ 479 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDS-FSLFLPRLQELYISRNKL-KTLPDASLFPVLLVMK 479 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSC-CCCCCTTCCEEECCSSCC-SSCCCGGGCTTCCEEE
T ss_pred hhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhh-hcccCChhcEEECCCCcc-CcCCCcccCccCCEEe
Confidence 77777888888888888887776544 3578888888886544 445567788888888864 466642 34588888
Q ss_pred ecCCCCCCCCCC---cccccccccccccc
Q 037604 429 LRDCNMLRSLPE---LPLCLQELDATNCN 454 (540)
Q Consensus 429 l~~~~~l~~~~~---~~~~L~~L~i~~c~ 454 (540)
+++|...+..|. ..++|+.|++.+++
T Consensus 480 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 888876665554 23467777777654
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=323.26 Aligned_cols=411 Identities=16% Similarity=0.123 Sum_probs=329.5
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILP 88 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~ 88 (540)
++|++++.+..++...+ ++|++|++++|.+. ...|..+..+ .+|++|++++|.++.++
T Consensus 4 ~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~------------------~~~~~~~~~l-~~L~~L~Ls~n~l~~~~ 61 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS---QKTTILNISQNYIS------------------ELWTSDILSL-SKLRILIISHNRIQYLD 61 (520)
T ss_dssp EEECTTSCCSSCCCSCC---TTCSEEECCSSCCC------------------CCCHHHHTTC-TTCCEEECCSSCCCEEE
T ss_pred eEecCCCCccccccccc---ccccEEECCCCccc------------------ccChhhcccc-ccccEEecCCCccCCcC
Confidence 68899998888876444 89999999999985 3334567788 49999999999998874
Q ss_pred -CCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCc-ccCCCC-ccCCCcEEEccCCcCcccc
Q 037604 89 -SNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLR-SFPSNL-HFVCPVTIDFSYCVNLIEF 164 (540)
Q Consensus 89 -~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~~~~-~l~~L~~L~L~~~~~~~~~ 164 (540)
..+ .+++|++|++++|.++. +|.. .+++|++|++++|.+.+ .+|..+ .+++|++|++++|.+....
T Consensus 62 ~~~~~~l~~L~~L~Ls~N~l~~--------lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 131 (520)
T 2z7x_B 62 ISVFKFNQELEYLDLSHNKLVK--------ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131 (520)
T ss_dssp GGGGTTCTTCCEEECCSSCCCE--------EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG
T ss_pred hHHhhcccCCCEEecCCCceee--------cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh
Confidence 444 89999999999999985 5555 79999999999998876 577888 9999999999999887655
Q ss_pred CCCCCCe--eEEEcccCCc--e-eccccccCCC-CCCEEEcccCccccccch-hcCCCCCCcEEeccCCc-------CCC
Q 037604 165 PQISGKI--TRLYLGCSAI--E-EVPSSIECLT-DLEVLDLMYCKRLKRIST-RFCKLRSLVDLCLNGCL-------NLE 230 (540)
Q Consensus 165 ~~~~~~l--~~L~L~~~~l--~-~l~~~~~~l~-~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~-------~~~ 230 (540)
...+.++ +.|+++.|.+ . ..|..+..+. ....+++++|...+.++. .+..+++|+.|++++|. ..+
T Consensus 132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 5566677 9999998888 3 5566666554 233567777777666554 46789999999999976 333
Q ss_pred cCchhhhCCCCCCEEEcCCCCCcc-----cCcccCCCCCCCeEccCCCcCCCcCCCCC-----CCCCCCcEEEccCCCCC
Q 037604 231 RFPEILEKMEHLKCINLDRTAITE-----LPSSFENLTGLKGLSVSDCSKLDKLPDNI-----GNLESLHHMSAFGSAIS 300 (540)
Q Consensus 231 ~~~~~l~~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~l~~~~-----~~l~~L~~L~l~~~~l~ 300 (540)
.++ .++.+++|+.|+++++.+.. ++..+ ..++|++|++++|.+.+.+|..+ +.+++|+.+++++|.+
T Consensus 212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 212 ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred chh-hhccccchhhccccccccCHHHHHHHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence 344 68889999999999887762 22211 24689999999999988899888 8999999999999998
Q ss_pred CCC-ccccCC---CCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCCCcc---c
Q 037604 301 QLP-SSVADS---NVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQS---L 372 (540)
Q Consensus 301 ~l~-~~~~~l---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~---l 372 (540)
.+| ..+..+ .+|+.|++++|.+.... ....+++|++|++++|.+.+ .|..++.+++|+.|++++|+++. +
T Consensus 289 ~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 776 444444 67999999999865532 12688999999999999998 78889999999999999999985 4
Q ss_pred chhccCCCCCCEEEecCCCCCCcCCC----CCCCccEEEecCCCCCCcCCCCC-CCccEEeecCCCCCCCCCC---cccc
Q 037604 373 PASIKQLSQLSSLELNDCKMLQSLPE----LPLCLKYLHLRDCKMLQSLPALP-LCLESLDLRDCNMLRSLPE---LPLC 444 (540)
Q Consensus 373 p~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~---~~~~ 444 (540)
|..+..+++|++|++++|.+.+.+|. ..++|++|++++|...+.+|..+ .+|+.|++++|... .+|. ..++
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~ 445 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEA 445 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCC
Confidence 56789999999999999998775663 34899999999999887777666 57999999999765 6775 3457
Q ss_pred cccccccccccccc
Q 037604 445 LQELDATNCNRLQS 458 (540)
Q Consensus 445 L~~L~i~~c~~l~~ 458 (540)
|++|++.+| .++.
T Consensus 446 L~~L~L~~N-~l~~ 458 (520)
T 2z7x_B 446 LQELNVASN-QLKS 458 (520)
T ss_dssp CCEEECCSS-CCCC
T ss_pred CCEEECCCC-cCCc
Confidence 888888885 4543
No 21
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.8e-36 Score=303.22 Aligned_cols=352 Identities=17% Similarity=0.173 Sum_probs=186.5
Q ss_pred chhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCC-CCCCCC-CCCC----
Q 037604 22 PGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLR-ILPSNF-KPKN---- 95 (540)
Q Consensus 22 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~-~l~~~~-~~~~---- 95 (540)
|+.+ +.+.|++|++++|.+ +.+|+.+.++ .+|++|++++|.+. .+|..+ .+.+
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-------------------~~iP~~i~~L-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l 63 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-------------------TEMPVEAENV-KSKTEYYNAWSEWERNAPPGNGEQREMAVS 63 (454)
T ss_dssp --------------------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHH
T ss_pred cccc-ccccchhhhcccCch-------------------hhCChhHhcc-cchhhhhccCCcccccCCcccccchhcchh
Confidence 4344 346777777777776 4556666665 36666666666553 455443 3333
Q ss_pred ---------ceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCCccCCCcEEEccCCcCccccCC
Q 037604 96 ---------LVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNLHFVCPVTIDFSYCVNLIEFPQ 166 (540)
Q Consensus 96 ---------L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 166 (540)
+++|++++|.++. +|.. .++|++|++++|.+.+ +|.. .++|++|++++|.+. .++.
T Consensus 64 ~l~~c~~~~l~~L~l~~~~l~~--------lp~~---~~~L~~L~l~~n~l~~-lp~~--~~~L~~L~l~~n~l~-~l~~ 128 (454)
T 1jl5_A 64 RLRDCLDRQAHELELNNLGLSS--------LPEL---PPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLK-ALSD 128 (454)
T ss_dssp HHHHHHHHTCSEEECTTSCCSC--------CCSC---CTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCS-CCCS
T ss_pred hhhhhhccCCCEEEecCCcccc--------CCCC---cCCCCEEEccCCcCCc-cccc--cCCCcEEECCCCccC-cccC
Confidence 3666666666553 3331 2566666666655443 4432 256666666666443 2333
Q ss_pred CCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEE
Q 037604 167 ISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCIN 246 (540)
Q Consensus 167 ~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 246 (540)
...++++|++++|.++.+| +++.+++|++|++++|.+.+ +|.. ..+|++|++++|.+.+ +| .++.+++|++|+
T Consensus 129 ~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 129 LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 4456666666666666666 46666677777776665443 4432 2366677776665544 44 466666777777
Q ss_pred cCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcc
Q 037604 247 LDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESF 326 (540)
Q Consensus 247 l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~ 326 (540)
+++|.++.+|... ++|++|++++|.+. .+| .++.+++|++|++++|.++++|.. +++|+.|++++|.+.+ +
T Consensus 202 l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l 272 (454)
T 1jl5_A 202 ADNNSLKKLPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-L 272 (454)
T ss_dssp CCSSCCSSCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-C
T ss_pred CCCCcCCcCCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-c
Confidence 7766666655432 46666777666554 455 366666677777777666666542 2566666776666544 3
Q ss_pred cccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCCcCCCCCCCccEE
Q 037604 327 PRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLPELPLCLKYL 406 (540)
Q Consensus 327 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L 406 (540)
|.. +++|++|++++|.+.+++.. .++|+.|++++|+++.++.. .++|++|++++|.+.+ +|..+++|+.|
T Consensus 273 ~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~-lp~~~~~L~~L 342 (454)
T 1jl5_A 273 PEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE-LPALPPRLERL 342 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC-CCCCCTTCCEE
T ss_pred Ccc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc-ccccCCcCCEE
Confidence 332 35666677766666654321 24666666666666654421 1466666666665443 55556666666
Q ss_pred EecCCCCCCcCCCCCCCccEEeecCCCCCC
Q 037604 407 HLRDCKMLQSLPALPLCLESLDLRDCNMLR 436 (540)
Q Consensus 407 ~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 436 (540)
++++|.. +.+|..+.+|++|++++|+..+
T Consensus 343 ~L~~N~l-~~lp~~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 343 IASFNHL-AEVPELPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp ECCSSCC-SCCCCCCTTCCEEECCSSCCSS
T ss_pred ECCCCcc-ccccchhhhccEEECCCCCCCc
Confidence 6666653 3455545556666666666554
No 22
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.4e-35 Score=297.75 Aligned_cols=364 Identities=22% Similarity=0.254 Sum_probs=280.3
Q ss_pred CCCCCccccCcEEEeecCCCCCCCCCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCC-------------CE
Q 037604 64 PNGLDYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYL-------------SM 129 (540)
Q Consensus 64 ~~~~~~l~~~L~~L~l~~~~l~~l~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L-------------~~ 129 (540)
|+.+.. ..|++|++++|.++.+|..+ .+++|++|++++|.+... +|..++++++| ++
T Consensus 5 p~~~~~--~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~-------~p~~~~~l~~L~~l~l~~c~~~~l~~ 75 (454)
T 1jl5_A 5 PRNVSN--TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERN-------APPGNGEQREMAVSRLRDCLDRQAHE 75 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHT-------SCTTSCCCHHHHHHHHHHHHHHTCSE
T ss_pred cccccc--ccchhhhcccCchhhCChhHhcccchhhhhccCCccccc-------CCcccccchhcchhhhhhhhccCCCE
Confidence 455543 58999999999999999876 899999999999998754 88999988875 99
Q ss_pred EecCCCCCCcccCCCCccCCCcEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccc
Q 037604 130 LNFEGCKSLRSFPSNLHFVCPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRIS 209 (540)
Q Consensus 130 L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 209 (540)
|++++|.+. .+|.. .++|++|++++|.+.+ +|..+.++++|++++|.++.++.. .++|++|++++|.+.+ +|
T Consensus 76 L~l~~~~l~-~lp~~--~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 76 LELNNLGLS-SLPEL--PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp EECTTSCCS-CCCSC--CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CC
T ss_pred EEecCCccc-cCCCC--cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-Cc
Confidence 999998754 45542 4789999999998776 788888999999999999987753 2699999999998765 77
Q ss_pred hhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCC
Q 037604 210 TRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESL 289 (540)
Q Consensus 210 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L 289 (540)
.++++++|++|++++|.+.+ +|.. ..+|++|++++|.++.+| .+..+++|+.|++++|.+.+ +|.. .++|
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L 217 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSL 217 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTC
T ss_pred -ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcc
Confidence 49999999999999987664 5543 359999999999999988 58999999999999988765 4443 2689
Q ss_pred cEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCC
Q 037604 290 HHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNF 369 (540)
Q Consensus 290 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l 369 (540)
++|++++|.++.+|. ++.+++|++|++++|.+.+ +|. .+++|++|++++|.+.++|.. +++|+.|++++|++
T Consensus 218 ~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 218 ESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp CEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC
T ss_pred cEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCcc---cCcCCEEECcCCcc
Confidence 999999999998884 8899999999999998765 443 347999999999999988764 47999999999999
Q ss_pred cccchhccCCCCCCEEEecCCCCCCcCCCCCCCccEEEecCCCCCCcCCCCCCCccEEeecCCCCCCCCCCccccccccc
Q 037604 370 QSLPASIKQLSQLSSLELNDCKMLQSLPELPLCLKYLHLRDCKMLQSLPALPLCLESLDLRDCNMLRSLPELPLCLQELD 449 (540)
Q Consensus 370 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~ 449 (540)
+.+|.. .++|++|++++|.+. .++..+++|++|++++|... .+|..+.+|++|++++|... .+|..+.+|++|+
T Consensus 290 ~~l~~~---~~~L~~L~l~~N~l~-~i~~~~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N~l~-~lp~~l~~L~~L~ 363 (454)
T 1jl5_A 290 SGLSEL---PPNLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLA-EVPELPQNLKQLH 363 (454)
T ss_dssp SEESCC---CTTCCEEECCSSCCS-EECCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEE
T ss_pred CcccCc---CCcCCEEECcCCcCC-cccCCcCcCCEEECCCCccc-cccccCCcCCEEECCCCccc-cccchhhhccEEE
Confidence 877632 379999999999755 46667789999999999855 58888889999999999755 6777778999999
Q ss_pred cccccccccCCCCCcccccc
Q 037604 450 ATNCNRLQSLAEIPSCLQEL 469 (540)
Q Consensus 450 i~~c~~l~~~~~~~~~l~~L 469 (540)
+.++ .++.++.+|.++..|
T Consensus 364 L~~N-~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 364 VEYN-PLREFPDIPESVEDL 382 (454)
T ss_dssp CCSS-CCSSCCCCCTTCCEE
T ss_pred CCCC-CCCcCCCChHHHHhh
Confidence 9984 566666777777665
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.3e-34 Score=292.56 Aligned_cols=364 Identities=14% Similarity=0.102 Sum_probs=176.1
Q ss_pred eecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCC-CCC
Q 037604 10 LDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLR-ILP 88 (540)
Q Consensus 10 L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~-~l~ 88 (540)
++.++.....++. + .++|++|++++|.+. ...|..+..+ .+|++|++++|.+. .++
T Consensus 15 ~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~------------------~~~~~~~~~l-~~L~~L~L~~n~~~~~i~ 71 (455)
T 3v47_A 15 AICINRGLHQVPE--L--PAHVNYVDLSLNSIA------------------ELNETSFSRL-QDLQFLKVEQQTPGLVIR 71 (455)
T ss_dssp EECCSSCCSSCCC--C--CTTCCEEECCSSCCC------------------EECTTTTSSC-TTCCEEECCCCSTTCEEC
T ss_pred cCcCCCCcccCCC--C--CCccCEEEecCCccC------------------cCChhHhccC-ccccEEECcCCcccceEC
Confidence 3444444444444 2 256666666666664 3335556666 36666666666653 443
Q ss_pred CC-C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCC--C-ccCCCcEEEccCCcCccc
Q 037604 89 SN-F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSN--L-HFVCPVTIDFSYCVNLIE 163 (540)
Q Consensus 89 ~~-~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~--~-~l~~L~~L~L~~~~~~~~ 163 (540)
.. + .+++|++|++++|.++.+ .|..|+++++|++|++++|.+.+..+.. + .+++|++|++++|.+...
T Consensus 72 ~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 144 (455)
T 3v47_A 72 NNTFRGLSSLIILKLDYNQFLQL-------ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144 (455)
T ss_dssp TTTTTTCTTCCEEECTTCTTCEE-------CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC
T ss_pred cccccccccCCEEeCCCCccCcc-------ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc
Confidence 32 3 566666666666666543 4556666666666666666655544333 4 566666666666655444
Q ss_pred cCC----CCCCeeEEEcccCCceec-cccccCC--CCCCEEEcccCccccccchh--------cCCCCCCcEEeccCCcC
Q 037604 164 FPQ----ISGKITRLYLGCSAIEEV-PSSIECL--TDLEVLDLMYCKRLKRISTR--------FCKLRSLVDLCLNGCLN 228 (540)
Q Consensus 164 ~~~----~~~~l~~L~L~~~~l~~l-~~~~~~l--~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~ 228 (540)
.|. .+.++++|++++|.++.+ +..+..+ .+|+.|++++|.+....+.. +..+++|++|++++|.+
T Consensus 145 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 332 123445555555554432 2233332 34555555554433222111 12334555555555554
Q ss_pred CCcCchhhhCC---CCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCC--CCCCCcEEEccCCCCCCC-
Q 037604 229 LERFPEILEKM---EHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIG--NLESLHHMSAFGSAISQL- 302 (540)
Q Consensus 229 ~~~~~~~l~~l---~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~--~l~~L~~L~l~~~~l~~l- 302 (540)
.+..+..+... ++|+.|+++++...........+ ....+..+. ..++|++|++++|.+.++
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF-------------KDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS-------------CCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred cccchhhhhccccccceeeEeeccccccccccchhhh-------------ccCcccccccccccCceEEEecCccccccc
Confidence 44444433322 45555555544322110000000 000000111 123455555555555543
Q ss_pred CccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCC-ChhhcCCCCCcEEEecCCCCccc-chhccCCC
Q 037604 303 PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEI-PQEIARLSSLIDLHIGGNNFQSL-PASIKQLS 380 (540)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~ 380 (540)
|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.++ +..+..+++|++|++++|+++.+ |..+..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 34455555555555555555544444555555555555555555542 33445555555555555555543 34455555
Q ss_pred CCCEEEecCCCCCCcCCC---CCCCccEEEecCCCCCCc
Q 037604 381 QLSSLELNDCKMLQSLPE---LPLCLKYLHLRDCKMLQS 416 (540)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~ 416 (540)
+|++|++++|++.+..+. ..++|++|++++|+....
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 555555555544332221 124555555555554433
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.7e-34 Score=299.86 Aligned_cols=373 Identities=15% Similarity=0.131 Sum_probs=240.0
Q ss_pred eecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCCC
Q 037604 10 LDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILPS 89 (540)
Q Consensus 10 L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~~ 89 (540)
||+++|.+..+.+++|.++++|++|++++|.+. ...|+.+..+ .+|++|++++|.++.+|.
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~ 117 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIR------------------SLDFHVFLFN-QDLEYLDVSHNRLQNISC 117 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC------------------EECTTTTTTC-TTCCEEECTTSCCCEECS
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCC------------------cCCHHHhCCC-CCCCEEECCCCcCCccCc
Confidence 344444445555555555555555555555553 2335556666 367777777777776666
Q ss_pred CCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCC--cEEEccCCcC--cccc
Q 037604 90 NFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCP--VTIDFSYCVN--LIEF 164 (540)
Q Consensus 90 ~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L--~~L~L~~~~~--~~~~ 164 (540)
. .+++|++|++++|.++.+. +|..|+++++|++|++++|.+.+ ..+ .+++| ++|++++|.+ .+..
T Consensus 118 ~-~l~~L~~L~Ls~N~l~~l~------~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 118 C-PMASLRHLDLSFNDFDVLP------VCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp C-CCTTCSEEECCSSCCSBCC------CCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred c-ccccCCEEECCCCCccccC------chHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccC
Confidence 6 6677777777777665420 34566677777777777665543 122 44444 7777776665 3333
Q ss_pred CCCCCCee----EEEcccCCcee-cc-ccccCCCCCCEEEcccC----------------------------ccccc---
Q 037604 165 PQISGKIT----RLYLGCSAIEE-VP-SSIECLTDLEVLDLMYC----------------------------KRLKR--- 207 (540)
Q Consensus 165 ~~~~~~l~----~L~L~~~~l~~-l~-~~~~~l~~L~~L~l~~~----------------------------~~~~~--- 207 (540)
+..+..++ .++++.|.+.. ++ ..+..+++|+.+++++| ...+.
T Consensus 188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 33222210 11112221110 00 01112233333333332 11110
Q ss_pred -cchhcCCCCCCcEEeccCCcCCCcCchhh-----hC--------------------------CCCCCEEEcCCCCCccc
Q 037604 208 -ISTRFCKLRSLVDLCLNGCLNLERFPEIL-----EK--------------------------MEHLKCINLDRTAITEL 255 (540)
Q Consensus 208 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-----~~--------------------------l~~L~~L~l~~~~l~~l 255 (540)
++..+ ...+|++|++++|.+.+.+|..+ .. ..+|++|++++|.+..+
T Consensus 268 ~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 268 KLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence 11111 12255555555555544444333 11 24577888888777644
Q ss_pred CcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCC---ccccCCCCccEEEccCCCCCCcccc-ccc
Q 037604 256 PSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLP---SSVADSNVLGILDFSRCKGLESFPR-SLL 331 (540)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~-~l~ 331 (540)
+. ...+++|++|++++|.+.+..|..+..+++|++|++++|.+++++ ..+..+++|++|++++|.+.+.+|. .+.
T Consensus 347 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 347 VC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp CC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred cC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 31 267899999999999999989999999999999999999999875 4688999999999999998885665 478
Q ss_pred CCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCCcCCCC----CCCccEE
Q 037604 332 GLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLPEL----PLCLKYL 406 (540)
Q Consensus 332 ~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~L~~L 406 (540)
.+++|++|++++|.+++ .|..+. ++|+.|++++|+++.+|..+..+++|++|++++|++. .+|.. .++|+.|
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCE
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEE
Confidence 89999999999999976 444333 7999999999999999998889999999999999866 56643 3889999
Q ss_pred EecCCCCCCc
Q 037604 407 HLRDCKMLQS 416 (540)
Q Consensus 407 ~l~~~~~l~~ 416 (540)
++++|+....
T Consensus 503 ~l~~N~~~c~ 512 (562)
T 3a79_B 503 WLHDNPWDCT 512 (562)
T ss_dssp ECCSCCBCCC
T ss_pred EecCCCcCCC
Confidence 9999985543
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-33 Score=289.77 Aligned_cols=355 Identities=16% Similarity=0.123 Sum_probs=227.3
Q ss_pred EeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccC-CCC-ccCCCcEEE
Q 037604 77 LHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFP-SNL-HFVCPVTID 154 (540)
Q Consensus 77 L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~-~~~-~l~~L~~L~ 154 (540)
++.+++.++.+|. -.++|++|++++|.++.+ .|..|+++++|++|++++|...+.++ ..+ .+++|++|+
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~-------~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLNSIAEL-------NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCCEE-------CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCCccCcC-------ChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 4444444444444 124455555555554432 34444555555555555544443332 223 455555555
Q ss_pred ccCCcCccccCCCC---CCeeEEEcccCCcee-cccc--ccCCCCCCEEEcccCccccccchh-cCCCCCCcEEeccCCc
Q 037604 155 FSYCVNLIEFPQIS---GKITRLYLGCSAIEE-VPSS--IECLTDLEVLDLMYCKRLKRISTR-FCKLRSLVDLCLNGCL 227 (540)
Q Consensus 155 L~~~~~~~~~~~~~---~~l~~L~L~~~~l~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 227 (540)
+++|.+....|..+ .+|++|++++|.++. ++.. +..+++|++|++++|.+.+..|.. +.++++|++|++++|.
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 55554443333222 233555554454442 2222 566677777777777665555544 5667777777777766
Q ss_pred CCCcCchhhhCC--CCCCEEEcCCCCCcccCcc---------cCCCCCCCeEccCCCcCCCcCCCCCCC---CCCCcEEE
Q 037604 228 NLERFPEILEKM--EHLKCINLDRTAITELPSS---------FENLTGLKGLSVSDCSKLDKLPDNIGN---LESLHHMS 293 (540)
Q Consensus 228 ~~~~~~~~l~~l--~~L~~L~l~~~~l~~l~~~---------~~~l~~L~~L~l~~~~~~~~l~~~~~~---l~~L~~L~ 293 (540)
+.+..+..+..+ .+|+.|+++++.+..++.. +..+++|+.|++++|.+.+..|..+.. .++|+.|+
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 666555555544 5667777777766654432 234566777777777666555544322 26677777
Q ss_pred ccCCCCCCC-----------Ccccc--CCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCC-ChhhcCCCCC
Q 037604 294 AFGSAISQL-----------PSSVA--DSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEI-PQEIARLSSL 359 (540)
Q Consensus 294 l~~~~l~~l-----------~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L 359 (540)
+++|..... +..+. ..++|+.|++++|.+.+..+..++.+++|++|++++|.+.++ +..+..+++|
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 776643321 11122 236899999999999998888999999999999999999984 6688999999
Q ss_pred cEEEecCCCCccc-chhccCCCCCCEEEecCCCCCCcCCCC---CCCccEEEecCCCCCCcCCC---CCCCccEEeecCC
Q 037604 360 IDLHIGGNNFQSL-PASIKQLSQLSSLELNDCKMLQSLPEL---PLCLKYLHLRDCKMLQSLPA---LPLCLESLDLRDC 432 (540)
Q Consensus 360 ~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~ 432 (540)
++|++++|.++.+ |..+..+++|++|++++|.+.+..|.. .++|++|++++|...+..+. .+.+|++|++++|
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 9999999999866 567889999999999999887665643 38999999999986543332 3356999999999
Q ss_pred CCCCCCCC
Q 037604 433 NMLRSLPE 440 (540)
Q Consensus 433 ~~l~~~~~ 440 (540)
+.....|.
T Consensus 406 ~l~~~~~~ 413 (455)
T 3v47_A 406 PWDCSCPR 413 (455)
T ss_dssp CBCCCTTT
T ss_pred CcccCCCc
Confidence 98877764
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.4e-33 Score=286.93 Aligned_cols=341 Identities=18% Similarity=0.236 Sum_probs=177.1
Q ss_pred hccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCCCCCCCCCceEeecCCcc
Q 037604 26 TNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSK 105 (540)
Q Consensus 26 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~ 105 (540)
..+++++.|+++++.+ ..+|. +..+ ++|++|++++|.+..++....+++|++|++++|.
T Consensus 43 ~~l~~l~~L~l~~~~i-------------------~~l~~-~~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~ 101 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGI-------------------KSIDG-VEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 101 (466)
T ss_dssp HHHHTCCEEECCSSCC-------------------CCCTT-GGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred hHhccccEEecCCCCC-------------------ccCcc-hhhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCc
Confidence 3456677777777765 23442 4555 3777777777777776664467777777777777
Q ss_pred hhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccccC-CCCCCeeEEEcccCCcee
Q 037604 106 VEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIEFP-QISGKITRLYLGCSAIEE 183 (540)
Q Consensus 106 i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~L~~~~l~~ 183 (540)
+.. ++. ++++++|++|++++|.+.+ ++. + .+++|++|++++|.+..... ..+.+++.|+++ +.+..
T Consensus 102 l~~--------~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~ 169 (466)
T 1o6v_A 102 IAD--------ITP-LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTD 169 (466)
T ss_dssp CCC--------CGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCC
T ss_pred ccc--------Chh-hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccC
Confidence 664 233 6777777777777765443 333 4 66777777776665432111 223344555553 22333
Q ss_pred ccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCC
Q 037604 184 VPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLT 263 (540)
Q Consensus 184 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~ 263 (540)
++. +..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.++.++ .+..++
T Consensus 170 ~~~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~ 243 (466)
T 1o6v_A 170 LKP-LANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLT 243 (466)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCT
T ss_pred chh-hccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCC
Confidence 222 4455555555555554322 22 24455555555555554443322 444555555555555555442 344555
Q ss_pred CCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccC
Q 037604 264 GLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRN 343 (540)
Q Consensus 264 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (540)
+|+.|++++|.+.+..+ +..+++|++|++++|.+++++. +..+++|+.|++++|.+.+..+ +..+++|++|++++
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence 55555555554443322 4445555555555555555443 4445555555555555443222 44455555555555
Q ss_pred CCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCCcCC-CCCCCccEEEecCCC
Q 037604 344 FAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLP-ELPLCLKYLHLRDCK 412 (540)
Q Consensus 344 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~ 412 (540)
|.+.++++ +..+++|+.|++++|.++.++ .+..+++|+.|++++|++.+..| ...++|+.|++++|+
T Consensus 319 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 319 NNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp SCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred CcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 55554333 445555555555555555443 34455555555555554443333 112344444444443
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.4e-33 Score=284.86 Aligned_cols=342 Identities=17% Similarity=0.222 Sum_probs=284.8
Q ss_pred ceEEEEeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCC
Q 037604 4 AIEGIFLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYP 83 (540)
Q Consensus 4 ~~~~i~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~ 83 (540)
.++.+. ++++.+..++. |..+++|++|++++|.+. .++. +..+ .+|++|++++|.
T Consensus 47 ~l~~L~--l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~-------------------~~~~-~~~l-~~L~~L~l~~n~ 101 (466)
T 1o6v_A 47 QVTTLQ--ADRLGIKSIDG--VEYLNNLTQINFSNNQLT-------------------DITP-LKNL-TKLVDILMNNNQ 101 (466)
T ss_dssp TCCEEE--CCSSCCCCCTT--GGGCTTCCEEECCSSCCC-------------------CCGG-GTTC-TTCCEEECCSSC
T ss_pred cccEEe--cCCCCCccCcc--hhhhcCCCEEECCCCccC-------------------Cchh-hhcc-ccCCEEECCCCc
Confidence 344444 45555566654 899999999999999984 3443 7777 499999999999
Q ss_pred CCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCCccCCCcEEEccCCcCccc
Q 037604 84 LRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNLHFVCPVTIDFSYCVNLIE 163 (540)
Q Consensus 84 l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 163 (540)
+..++....+++|++|++++|.++. ++. +.++++|++|++++|.+.+ ++....+++|++|+++++ ....
T Consensus 102 l~~~~~~~~l~~L~~L~L~~n~l~~--------~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~-~~~~ 170 (466)
T 1o6v_A 102 IADITPLANLTNLTGLTLFNNQITD--------IDP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQ-VTDL 170 (466)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCC--------CGG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEES-CCCC
T ss_pred cccChhhcCCCCCCEEECCCCCCCC--------ChH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCc-ccCc
Confidence 9988885589999999999999885 333 8899999999999987554 444238999999999743 3222
Q ss_pred c-CCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCC
Q 037604 164 F-PQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHL 242 (540)
Q Consensus 164 ~-~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 242 (540)
. ...+.+|+.|++++|.++.++ .+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+ + ..+..+++|
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L 245 (466)
T 1o6v_A 171 KPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNL 245 (466)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTC
T ss_pred hhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCC
Confidence 1 245567899999999998876 48889999999999998766554 7789999999999987665 3 468899999
Q ss_pred CEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCC
Q 037604 243 KCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKG 322 (540)
Q Consensus 243 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~ 322 (540)
+.|++++|.++.++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++++. +..+++|+.|++++|.+
T Consensus 246 ~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 246 TDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp SEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCC
T ss_pred CEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcC
Confidence 999999999998766 8899999999999998776543 7889999999999999998865 78899999999999998
Q ss_pred CCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCC
Q 037604 323 LESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQ 394 (540)
Q Consensus 323 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 394 (540)
.+..+ +..+++|++|++++|.+.++ ..+..+++|+.|++++|+++.+++ +..+++|+.|++++|++.+
T Consensus 322 ~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 322 SDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 87665 78899999999999999987 468999999999999999987775 8899999999999997654
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.2e-33 Score=292.57 Aligned_cols=365 Identities=16% Similarity=0.112 Sum_probs=230.4
Q ss_pred cEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcE
Q 037604 74 LRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVT 152 (540)
Q Consensus 74 L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~ 152 (540)
.++++++++.++.+|.... ++|++|++++|.++.+ .|..|.++++|++|++++|.+.+..|..+ .+++|++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISEL-------RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCC-------CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcccc-------ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 4667777777777766542 6677777777776643 34566777777777777766665556666 6777777
Q ss_pred EEccCCcCccccCCCCCCeeEEEcccCCceecc--ccccCCCCCCEEEcccCccccccchhcCCCCCC--cEEeccCCcC
Q 037604 153 IDFSYCVNLIEFPQISGKITRLYLGCSAIEEVP--SSIECLTDLEVLDLMYCKRLKRISTRFCKLRSL--VDLCLNGCLN 228 (540)
Q Consensus 153 L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 228 (540)
|++++|.+.......+.+|++|++++|.++.++ ..++++++|++|++++|.+.+. .+..+++| ++|++++|.+
T Consensus 105 L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 105 LDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp EECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred EECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 777777654322234455677777777776543 5666777777777777665442 23334444 6777766655
Q ss_pred --CCcCchhhhC--------------------------CCCCCEEEcCCCC----------------------------C
Q 037604 229 --LERFPEILEK--------------------------MEHLKCINLDRTA----------------------------I 252 (540)
Q Consensus 229 --~~~~~~~l~~--------------------------l~~L~~L~l~~~~----------------------------l 252 (540)
.+..|..+.. +++|+.+++++|. +
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 3333333322 2344444444432 1
Q ss_pred c-----ccCcccCCCCCCCeEccCCCcCCCcCCCCC-----CCCC--------------------------CCcEEEccC
Q 037604 253 T-----ELPSSFENLTGLKGLSVSDCSKLDKLPDNI-----GNLE--------------------------SLHHMSAFG 296 (540)
Q Consensus 253 ~-----~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~-----~~l~--------------------------~L~~L~l~~ 296 (540)
. .++..+ ..++|++|++++|.+.+.+|..+ ..++ +|+.|++++
T Consensus 262 ~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 262 TWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp CHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEES
T ss_pred cHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccC
Confidence 1 111111 22377788888877777777655 3333 355555555
Q ss_pred CCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCC---hhhcCCCCCcEEEecCCCCcc-c
Q 037604 297 SAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIP---QEIARLSSLIDLHIGGNNFQS-L 372 (540)
Q Consensus 297 ~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~~l~~-l 372 (540)
|.+..++. ...+++|++|++++|.+.+..|..++.+++|++|++++|.+.+++ ..+..+++|+.|++++|+++. +
T Consensus 341 n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 341 TPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp SCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred CCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 55543321 156678888888888877777777788888888888888887644 456778888888888888775 6
Q ss_pred chh-ccCCCCCCEEEecCCCCCCcCCCCC-CCccEEEecCCCCCCcCCCCC---CCccEEeecCCCCCCCCCCc----cc
Q 037604 373 PAS-IKQLSQLSSLELNDCKMLQSLPELP-LCLKYLHLRDCKMLQSLPALP---LCLESLDLRDCNMLRSLPEL----PL 443 (540)
Q Consensus 373 p~~-l~~l~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~---~~L~~L~l~~~~~l~~~~~~----~~ 443 (540)
|.. +..+++|++|++++|.+.+.+|..+ ++|+.|++++|. ++.+|..+ .+|++|++++|... .+|.. .+
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~ 497 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT 497 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCT
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCC
Confidence 654 5677888888888888777666554 688888888885 44666533 45888888887655 45542 34
Q ss_pred cccccccccc
Q 037604 444 CLQELDATNC 453 (540)
Q Consensus 444 ~L~~L~i~~c 453 (540)
+|+.|++.++
T Consensus 498 ~L~~L~l~~N 507 (562)
T 3a79_B 498 SLQYIWLHDN 507 (562)
T ss_dssp TCCCEECCSC
T ss_pred CCCEEEecCC
Confidence 5666666664
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.9e-33 Score=296.47 Aligned_cols=398 Identities=19% Similarity=0.137 Sum_probs=225.8
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILP 88 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~ 88 (540)
+||+++|++..+++.+|.++++|++|++++|.++ ...++.+..+ .+|++|++++|+++.+|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~------------------~i~~~~f~~L-~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------------------TIEDGAYQSL-SHLSTLILTGNPIQSLA 116 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------------------EECTTTTTTC-TTCCEEECTTCCCCEEC
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC------------------CcChhHhcCC-CCCCEEEccCCcCCCCC
Confidence 5788889889999999999999999999999985 2234456777 48888888888888887
Q ss_pred CC-C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCc-ccCCCC-ccCCCcEEEccCCcCcccc
Q 037604 89 SN-F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLR-SFPSNL-HFVCPVTIDFSYCVNLIEF 164 (540)
Q Consensus 89 ~~-~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~~~~-~l~~L~~L~L~~~~~~~~~ 164 (540)
.. + ++++|++|++++|.++.+ .+..|+++++|++|++++|.+.. ..|..+ .+++|++|++++|.+.+..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l-------~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASL-------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCS-------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred HHHhcCCCCCCEEECCCCcCCCC-------ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 64 3 788888888888888764 34467888888888888877654 355666 7888888888888765544
Q ss_pred CCCCCC-------eeEEEcccCCceeccccccCCCCCCEEEcccC-----------------------------------
Q 037604 165 PQISGK-------ITRLYLGCSAIEEVPSSIECLTDLEVLDLMYC----------------------------------- 202 (540)
Q Consensus 165 ~~~~~~-------l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~----------------------------------- 202 (540)
+..+.. ...++++.|.++.++........++.+++.+|
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 332221 13444444444433332222222222222222
Q ss_pred -----------------------------------------------ccccccchhcCCCCCCcEEeccCCcCCCcCch-
Q 037604 203 -----------------------------------------------KRLKRISTRFCKLRSLVDLCLNGCLNLERFPE- 234 (540)
Q Consensus 203 -----------------------------------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~- 234 (540)
..... ..+.....++.|++.+|......+.
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~ 347 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLK 347 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCB
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCccc
Confidence 11100 0122233444444444432211110
Q ss_pred ------------------hhhCCCCCCEEEcCCCCCc---ccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEE
Q 037604 235 ------------------ILEKMEHLKCINLDRTAIT---ELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMS 293 (540)
Q Consensus 235 ------------------~l~~l~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 293 (540)
....+++|+.++++.|.+. ..+..+..+.+|+.+++..+.... .+..+..+++|+.++
T Consensus 348 l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~ 426 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 426 (635)
T ss_dssp CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEE
T ss_pred chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchh
Confidence 1112334444444444333 112223333444444444433222 223344555666666
Q ss_pred ccCCCCCCC--CccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCC--CChhhcCCCCCcEEEecCCCC
Q 037604 294 AFGSAISQL--PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVME--IPQEIARLSSLIDLHIGGNNF 369 (540)
Q Consensus 294 l~~~~l~~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~l 369 (540)
+.++..... +..+..+++++.++++.|.+.+..+..+..++.++.|++++|.... .|..+..+++|++|++++|++
T Consensus 427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L 506 (635)
T 4g8a_A 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506 (635)
T ss_dssp CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred hhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc
Confidence 655544433 2334555666666666666655555556666666666666665433 455566666666666666666
Q ss_pred ccc-chhccCCCCCCEEEecCCCCCCcCCC---CCCCccEEEecCCCCCCcCCCCC----CCccEEeecCCCCC
Q 037604 370 QSL-PASIKQLSQLSSLELNDCKMLQSLPE---LPLCLKYLHLRDCKMLQSLPALP----LCLESLDLRDCNML 435 (540)
Q Consensus 370 ~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~----~~L~~L~l~~~~~l 435 (540)
+.+ |..+..+++|++|++++|++.+..+. ..++|+.|++++|+..+..|..+ .+|+.|++++|+..
T Consensus 507 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 654 34456666666666666654443332 22566666666666554444332 24666666666644
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.5e-32 Score=278.36 Aligned_cols=349 Identities=14% Similarity=0.137 Sum_probs=232.4
Q ss_pred cCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCCCCCCCCCceEe
Q 037604 20 LDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILPSNFKPKNLVEL 99 (540)
Q Consensus 20 ~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~~~~~~~~L~~L 99 (540)
..+.++.++++|++|++++|.+. .+| ++..+ ++|++|++++|.++.+| ...+++|++|
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~-------------------~~~-~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L 90 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSIT-------------------DMT-GIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYL 90 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCC-------------------CCT-TGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEE
T ss_pred ccccChhHcCCCCEEEccCCCcc-------------------cCh-hhccc-CCCCEEEccCCcCCeEc-cccCCCCCEE
Confidence 33446888999999999999884 344 56677 48999999999888886 4478889999
Q ss_pred ecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccccCCCCCCeeEEEccc
Q 037604 100 NLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIEFPQISGKITRLYLGC 178 (540)
Q Consensus 100 ~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~ 178 (540)
++++|.++. ++ ++++++|++|++++|.+.+ ++ + .+++|++|++++|.+.+.......++++|+++.
T Consensus 91 ~Ls~N~l~~--------~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 91 ACDSNKLTN--------LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHL 157 (457)
T ss_dssp ECCSSCCSC--------CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTT
T ss_pred ECcCCCCce--------ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCC
Confidence 999988874 32 7888899999999887665 44 5 788888888888876553234445567777765
Q ss_pred C-CceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCc
Q 037604 179 S-AIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPS 257 (540)
Q Consensus 179 ~-~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~ 257 (540)
| .+..+ .+..+++|++|++++|.+.+ +| +..+++|++|++++|.+.+. .++.+++|++|++++|+++.+|
T Consensus 158 n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip- 228 (457)
T 3bz5_A 158 NKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID- 228 (457)
T ss_dssp CSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC-
T ss_pred CCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC-
Confidence 5 34444 35566777777777766544 33 56666777777777655543 2566677777777777776665
Q ss_pred ccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCc
Q 037604 258 SFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLV 337 (540)
Q Consensus 258 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 337 (540)
+..+++|+.|++++|.+.+.. ++.+++|+.|+++++. |+.+++++|...+.+| ++.+++|+
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~-------------L~~L~l~~n~~~~~~~--~~~l~~L~ 289 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD-------------LLEIDLTHNTQLIYFQ--AEGCRKIK 289 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC-------------CSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred -ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC-------------CCEEECCCCccCCccc--ccccccCC
Confidence 566667777777776655532 3345556666555443 3444555555555544 34556666
Q ss_pred EEeccCCCCCC-CCh--------hhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCCcCCCCCCCccEEEe
Q 037604 338 ALHIRNFAVME-IPQ--------EIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLPELPLCLKYLHL 408 (540)
Q Consensus 338 ~L~l~~~~~~~-~~~--------~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l 408 (540)
.|++++|...+ +|. .+..+++|+.|++++|+++.++ ++.+++|+.|++++|++.+ + +.|..|++
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~-l----~~L~~L~l 362 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD-F----SSVGKIPA 362 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCB-C----TTGGGSSG
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCC-c----cccccccc
Confidence 66666665332 221 1445578899999999888874 7888899999999887654 2 45666666
Q ss_pred cCCCCCCcCCCCCCCccEEeecCCCCCCCCCC
Q 037604 409 RDCKMLQSLPALPLCLESLDLRDCNMLRSLPE 440 (540)
Q Consensus 409 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 440 (540)
++|...+. ..+..|+.+++++|...+.+|.
T Consensus 363 ~~n~l~g~--~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 363 LNNNFEAE--GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp GGTSEEEE--EEEEECCCBCCBTTBEEEECCT
T ss_pred cCCcEEec--ceeeecCccccccCcEEEEcCh
Confidence 66554332 1223467778888887777775
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.4e-31 Score=262.70 Aligned_cols=307 Identities=20% Similarity=0.261 Sum_probs=224.2
Q ss_pred hhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCCCCCCCCCceEeecCC
Q 037604 24 TFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRF 103 (540)
Q Consensus 24 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~ 103 (540)
.+..+++|++|+++++.+. .++ ++..+ ++|++|++++|.++.++....+++|++|++++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-------------------~~~-~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~ 97 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-------------------SIQ-GIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGT 97 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-------------------CCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred cchhcccccEEEEeCCccc-------------------cch-hhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccC
Confidence 3667888888888888773 344 36666 48888888888888887755788888888888
Q ss_pred cchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCCccCCCcEEEccCCcCccccCCCCCCeeEEEcccCCcee
Q 037604 104 SKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNLHFVCPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEE 183 (540)
Q Consensus 104 n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~ 183 (540)
|.++. + +.+..+++|++|++++|.+.+ ++....+++|++|++++|......
T Consensus 98 n~i~~--------~-~~~~~l~~L~~L~l~~n~i~~-~~~~~~l~~L~~L~l~~n~~~~~~------------------- 148 (347)
T 4fmz_A 98 NKITD--------I-SALQNLTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDL------------------- 148 (347)
T ss_dssp SCCCC--------C-GGGTTCTTCSEEECTTSCCCC-CGGGTTCTTCCEEECTTCTTCCCC-------------------
T ss_pred CcccC--------c-hHHcCCCcCCEEECcCCcccC-chhhccCCceeEEECCCCCCcccc-------------------
Confidence 88774 2 357888888888888876543 343227778888888777543322
Q ss_pred ccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCC
Q 037604 184 VPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLT 263 (540)
Q Consensus 184 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~ 263 (540)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|+.+++++|.+..++. +..++
T Consensus 149 --~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~ 221 (347)
T 4fmz_A 149 --SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP-VANMT 221 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GGGCT
T ss_pred --cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch-hhcCC
Confidence 235667778888887776544332 6677788888888776544 332 6777888888888887776654 67777
Q ss_pred CCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccC
Q 037604 264 GLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRN 343 (540)
Q Consensus 264 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (540)
+|+.|++++|.+....+ +..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcC
Confidence 88888888876655433 67778888888888887776 3577778888888888876653 3477888888888888
Q ss_pred CCCCC-CChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCC
Q 037604 344 FAVME-IPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKML 393 (540)
Q Consensus 344 ~~~~~-~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 393 (540)
|.+.+ .+..+..+++|+.|++++|.++.++. +..+++|++|++++|++.
T Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 88877 45667888899999999998887765 778889999999988753
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-31 Score=272.75 Aligned_cols=311 Identities=19% Similarity=0.173 Sum_probs=244.6
Q ss_pred EEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEE
Q 037604 75 RYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTI 153 (540)
Q Consensus 75 ~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L 153 (540)
+.++.+++.++.+|..+ .+++++|+|++|.++.+ .+..|.++++|++|++++|.+.+..|..+ .+++|++|
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 85 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTL-------NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEE-------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceE-------CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEE
Confidence 45666666666666544 34666777777766653 44566667777777777666655556666 66677777
Q ss_pred EccCCcCccccCC---CCCCeeEEEcccCCceec-cccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCC
Q 037604 154 DFSYCVNLIEFPQ---ISGKITRLYLGCSAIEEV-PSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNL 229 (540)
Q Consensus 154 ~L~~~~~~~~~~~---~~~~l~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 229 (540)
++++|.+....+. .+.+|++|++++|.+..+ +..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp ECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred ECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 7766655433322 234557777776777654 456788999999999999887777778999999999999998877
Q ss_pred CcCchhhhCCCCCCEEEcCCCCCcccCc-ccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCc-ccc
Q 037604 230 ERFPEILEKMEHLKCINLDRTAITELPS-SFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPS-SVA 307 (540)
Q Consensus 230 ~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~ 307 (540)
+..+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|...+.++.......+|+.|++++|.++.+|. .+.
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 7666778999999999999999986654 58889999999999999888888877777799999999999999874 578
Q ss_pred CCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCCCcccch-hccCCCCCCEE
Q 037604 308 DSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQSLPA-SIKQLSQLSSL 385 (540)
Q Consensus 308 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L 385 (540)
.+++|+.|++++|.+.+..+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|+++.++. .+..+++|++|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 89999999999999887777778899999999999999988 46778899999999999999998875 46788999999
Q ss_pred EecCCCCC
Q 037604 386 ELNDCKML 393 (540)
Q Consensus 386 ~l~~~~~~ 393 (540)
++++|++.
T Consensus 326 ~l~~N~l~ 333 (477)
T 2id5_A 326 ILDSNPLA 333 (477)
T ss_dssp ECCSSCEE
T ss_pred EccCCCcc
Confidence 99998754
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.8e-30 Score=256.37 Aligned_cols=303 Identities=17% Similarity=0.194 Sum_probs=252.4
Q ss_pred CccccCcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCCcc
Q 037604 68 DYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNLHF 147 (540)
Q Consensus 68 ~~l~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~l 147 (540)
..+ ++|++|+++++.+..++....+++|++|++++|.++. ++. +..+++|++|++++|.+.+ ++....+
T Consensus 41 ~~l-~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~--------~~~-~~~l~~L~~L~L~~n~i~~-~~~~~~l 109 (347)
T 4fmz_A 41 EEL-ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--------ISP-LSNLVKLTNLYIGTNKITD-ISALQNL 109 (347)
T ss_dssp HHH-TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG-GTTCTTCCEEECCSSCCCC-CGGGTTC
T ss_pred hhc-ccccEEEEeCCccccchhhhhcCCccEEEccCCcccc--------chh-hhcCCcCCEEEccCCcccC-chHHcCC
Confidence 345 4899999999999988876688999999999998875 334 8899999999999886553 4432277
Q ss_pred CCCcEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCc
Q 037604 148 VCPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCL 227 (540)
Q Consensus 148 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 227 (540)
++|++|++++|.+ +.++. +..+++|++|++++|......+. +..+++|++|++++|.
T Consensus 110 ~~L~~L~l~~n~i---------------------~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 110 TNLRELYLNEDNI---------------------SDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK 166 (347)
T ss_dssp TTCSEEECTTSCC---------------------CCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CcCCEEECcCCcc---------------------cCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC
Confidence 7777777777643 33444 77899999999999977766655 8999999999999987
Q ss_pred CCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCcccc
Q 037604 228 NLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVA 307 (540)
Q Consensus 228 ~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~ 307 (540)
..+..+ +..+++|+.|++++|.+..++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.++. +.
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~ 240 (347)
T 4fmz_A 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LA 240 (347)
T ss_dssp CCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred cCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hh
Confidence 665433 8899999999999999998876 8899999999999988776544 7889999999999999999876 88
Q ss_pred CCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCccc-chhccCCCCCCEEE
Q 037604 308 DSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSL-PASIKQLSQLSSLE 386 (540)
Q Consensus 308 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~ 386 (540)
.+++|++|++++|.+.+. ..+..+++|++|++++|.+.+++ .+..+++|+.|++++|.++.. +..+..+++|++|+
T Consensus 241 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred cCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 999999999999987663 45889999999999999999884 588999999999999998854 46688999999999
Q ss_pred ecCCCCCCcCC-CCCCCccEEEecCCCC
Q 037604 387 LNDCKMLQSLP-ELPLCLKYLHLRDCKM 413 (540)
Q Consensus 387 l~~~~~~~~~~-~~~~~L~~L~l~~~~~ 413 (540)
+++|++.+..| ..+++|++|++++|+.
T Consensus 318 L~~n~l~~~~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 318 LSQNHITDIRPLASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSSCCCCGGGGGCTTCSEESSSCC--
T ss_pred ccCCccccccChhhhhccceeehhhhcc
Confidence 99999776555 4558999999999974
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=6.2e-31 Score=268.07 Aligned_cols=336 Identities=15% Similarity=0.122 Sum_probs=250.2
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILP 88 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~ 88 (540)
+||++++.+.+++ +|..+++|++|++++|.++ .+| +..+ .+|++|++++|.++.++
T Consensus 46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~-------------------~~~--~~~l-~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNIT-------------------TLD--LSQN-TNLTYLACDSNKLTNLD 101 (457)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCS-------------------CCC--CTTC-TTCSEEECCSSCCSCCC
T ss_pred EEEccCCCcccCh--hhcccCCCCEEEccCCcCC-------------------eEc--cccC-CCCCEEECcCCCCceee
Confidence 4666777767774 6999999999999999985 333 6677 49999999999999886
Q ss_pred CCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccccC-C
Q 037604 89 SNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIEFP-Q 166 (540)
Q Consensus 89 ~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~-~ 166 (540)
...+++|++|++++|.++. +| ++.+++|++|++++|.+.+ ++ + .+++|++|++++|...+.++ .
T Consensus 102 -~~~l~~L~~L~L~~N~l~~--------l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~ 167 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTK--------LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVT 167 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSC--------CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCT
T ss_pred -cCCCCcCCEEECCCCcCCe--------ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccc
Confidence 4489999999999999975 43 8899999999999988776 33 5 89999999999997666553 4
Q ss_pred CCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEE
Q 037604 167 ISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCIN 246 (540)
Q Consensus 167 ~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 246 (540)
.+.+++.|++++|.++.+| +..+++|+.|++++|.+.+. .++.+++|++|++++|.+.+ +| ++.+++|+.|+
T Consensus 168 ~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp TCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred cCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 5677899999999999987 88899999999999987664 38889999999999988776 56 88999999999
Q ss_pred cCCCCCcccCcccCCCCCCCeEccCC----------CcCCCcCCCCCCCCCCCcEEEccCCCCCC-CCccccCCCCccEE
Q 037604 247 LDRTAITELPSSFENLTGLKGLSVSD----------CSKLDKLPDNIGNLESLHHMSAFGSAISQ-LPSSVADSNVLGIL 315 (540)
Q Consensus 247 l~~~~l~~l~~~~~~l~~L~~L~l~~----------~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L 315 (540)
+++|.++.+| +..+++|+.|++++ |...+.+| ++.+++|+.|++++|...+ +|. ..++|+.+
T Consensus 240 l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L 312 (457)
T 3bz5_A 240 CSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITEL 312 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCC
T ss_pred eeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEe
Confidence 9999999876 44566666555544 43333333 2344555555555553221 111 11222222
Q ss_pred EccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCCc
Q 037604 316 DFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQS 395 (540)
Q Consensus 316 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 395 (540)
+ ++.+++|++|++++|.+++++ ++.+++|+.|++++|+++.++ .|+.|.+++|.+.+.
T Consensus 313 ~-------------l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~-------~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 313 D-------------LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-------SVGKIPALNNNFEAE 370 (457)
T ss_dssp C-------------CTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCT-------TGGGSSGGGTSEEEE
T ss_pred c-------------hhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCcc-------ccccccccCCcEEec
Confidence 2 345578899999999988873 788899999999999887643 455556666654443
Q ss_pred CCCCCCCccEEEecCCCCCCcCCCCC
Q 037604 396 LPELPLCLKYLHLRDCKMLQSLPALP 421 (540)
Q Consensus 396 ~~~~~~~L~~L~l~~~~~l~~~~~~~ 421 (540)
..+..|+.+++++|...+.+|..+
T Consensus 371 --~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 371 --GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp --EEEEECCCBCCBTTBEEEECCTTC
T ss_pred --ceeeecCccccccCcEEEEcChhH
Confidence 123456667778887777777543
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.9e-30 Score=260.41 Aligned_cols=301 Identities=14% Similarity=0.088 Sum_probs=204.6
Q ss_pred CcEEEeecCCCCCCCCCCC--CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCC
Q 037604 73 KLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVC 149 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~~~~--~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~ 149 (540)
++++|+++++.++.+|... .+++|++|++++|.++.+ .+..|..+++|++|++++|.+.+..|..+ .+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-------ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 5666666666666666542 556666666666666543 33456666666666666655554444444 5555
Q ss_pred CcEEEccCCcCccccCCCCCCeeEEEcccCCceecccc-ccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcC
Q 037604 150 PVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSS-IECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLN 228 (540)
Q Consensus 150 L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 228 (540)
|++|++++| .++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 119 L~~L~L~~n---------------------~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 119 LTVLVLERN---------------------DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp CCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred CCEEECCCC---------------------ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 555555554 44445544 46778888888888877666666677788888888888765
Q ss_pred CCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccC
Q 037604 229 LERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVAD 308 (540)
Q Consensus 229 ~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~ 308 (540)
.+. .+..+++|+.|++++|.++.++ ..++|+.|++++|.+... |.. ..++|+.|++++|.+++. ..+..
T Consensus 178 ~~~---~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~-~~l~~ 246 (390)
T 3o6n_A 178 THV---DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT-AWLLN 246 (390)
T ss_dssp SBC---CGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC-GGGGG
T ss_pred Ccc---ccccccccceeecccccccccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc-HHHcC
Confidence 543 2556778888888888776442 335788888888766543 322 246788888888888776 45777
Q ss_pred CCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEec
Q 037604 309 SNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELN 388 (540)
Q Consensus 309 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~ 388 (540)
+++|++|++++|.+.+..|..+..+++|++|++++|.+..++..+..+++|+.|++++|+++.+|..+..+++|++|+++
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECC
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECC
Confidence 78888888888887777777788888888888888888877776777888888888888888888777778888888888
Q ss_pred CCCCCCcCCCCCCCccEEEecCCC
Q 037604 389 DCKMLQSLPELPLCLKYLHLRDCK 412 (540)
Q Consensus 389 ~~~~~~~~~~~~~~L~~L~l~~~~ 412 (540)
+|++...-...+++|+.|++++|+
T Consensus 327 ~N~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 327 HNSIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp SSCCCCCCCCTTCCCSEEECCSSC
T ss_pred CCccceeCchhhccCCEEEcCCCC
Confidence 887543322333445555554444
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=268.14 Aligned_cols=279 Identities=15% Similarity=0.141 Sum_probs=144.2
Q ss_pred CCCCCccccCcEEEeecCCCCCCCC-CCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCccc
Q 037604 64 PNGLDYLPEKLRYLHWDTYPLRILP-SNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSF 141 (540)
Q Consensus 64 ~~~~~~l~~~L~~L~l~~~~l~~l~-~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~ 141 (540)
+..+..++ +|++|++++|.+..++ ..+ .+++|++|+|++|.++.+ .+..|.++++|++|++++|.+.+..
T Consensus 49 ~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 49 QDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-------PLGVFTGLSNLTKLDISENKIVILL 120 (477)
T ss_dssp TTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-------CTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred HhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-------CcccccCCCCCCEEECCCCccccCC
Confidence 34455553 5666666666555542 223 555666666666655542 2233555666666666665555544
Q ss_pred CCCC-ccCCCcEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcE
Q 037604 142 PSNL-HFVCPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVD 220 (540)
Q Consensus 142 ~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 220 (540)
+..+ .+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYISH--------------------RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECT--------------------TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred hhHccccccCCEEECCCCccceeCh--------------------hhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 5555 55556666665554433322 23444555555555555444333334455555555
Q ss_pred EeccCCcCCCcCchhhhCCCCCCEEEcCCCCC-cccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCC
Q 037604 221 LCLNGCLNLERFPEILEKMEHLKCINLDRTAI-TELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAI 299 (540)
Q Consensus 221 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l-~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l 299 (540)
|++++|.+.+..+..+..+++|+.|++++|.. ..+|.......+|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 55555444443344445555555555555332 23443333344555555555544432223344555555555555555
Q ss_pred CCCC-ccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCCh-hhcCCCCCcEEEecCCCCc
Q 037604 300 SQLP-SSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQ-EIARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 300 ~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~ 370 (540)
+.++ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 5442 234555555666666655555555556666666666666666666443 3455666666666666654
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.1e-29 Score=271.53 Aligned_cols=379 Identities=20% Similarity=0.191 Sum_probs=285.7
Q ss_pred EeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccC-CCCCccccCcEEEeecCCCCCCC
Q 037604 9 FLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLP-NGLDYLPEKLRYLHWDTYPLRIL 87 (540)
Q Consensus 9 ~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~L~l~~~~l~~l 87 (540)
+||+++|++..+++++|.++++|++|+|++|++. .+| +.+..+ .+|++|++++|.++.+
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-------------------~l~~~~f~~L-~~L~~L~Ls~N~l~~l 139 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-------------------SLALGAFSGL-SSLQKLVAVETNLASL 139 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-------------------EECGGGGTTC-TTCCEEECTTSCCCCS
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-------------------CCCHHHhcCC-CCCCEEECCCCcCCCC
Confidence 5778888889999999999999999999999984 455 456777 4999999999999988
Q ss_pred CCC-C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCC----cEEEccCCcC
Q 037604 88 PSN-F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCP----VTIDFSYCVN 160 (540)
Q Consensus 88 ~~~-~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L----~~L~L~~~~~ 160 (540)
+.. + .+++|++|++++|.++.+ . +|..++.+++|++|++++|.+.+..+..+ .+.++ ..++++.|.+
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~l~~~-----~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 140 ENFPIGHLKTLKELNVAHNLIQSF-----K-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp TTCCCTTCTTCCEEECCSSCCCCC-----C-CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ChhhhhcCcccCeeccccCccccC-----C-CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc
Confidence 875 3 789999999999988742 1 56778899999999999988776555554 33222 2444444433
Q ss_pred ccccCCCCC-----------------------------------------------------------------------
Q 037604 161 LIEFPQISG----------------------------------------------------------------------- 169 (540)
Q Consensus 161 ~~~~~~~~~----------------------------------------------------------------------- 169 (540)
....+....
T Consensus 214 ~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 214 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence 221111111
Q ss_pred -------------CeeEEEcccCCceeccccccCCCCCCEEEcccCcccccc-------------------chhcCCCCC
Q 037604 170 -------------KITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRI-------------------STRFCKLRS 217 (540)
Q Consensus 170 -------------~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~-------------------~~~l~~l~~ 217 (540)
.++.+.+..+.+..++ .+.....++.|++.+|.+.... +.....+++
T Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~ 372 (635)
T 4g8a_A 294 YLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 372 (635)
T ss_dssp CEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred cccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence 1112222222222221 1334456667776665432211 112345788
Q ss_pred CcEEeccCCcCCC--cCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCC-CCCCCCCCCcEEEc
Q 037604 218 LVDLCLNGCLNLE--RFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLP-DNIGNLESLHHMSA 294 (540)
Q Consensus 218 L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l 294 (540)
|+.|++++|.... ..+..+..+.+|+.+++..+.....+..+..+++|+.+++..+......+ ..+..+++++.+++
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 9999999976643 35667788999999999999988888888999999999999887665544 45778999999999
Q ss_pred cCCCCCCC-CccccCCCCccEEEccCCCCCC-cccccccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCCCcc
Q 037604 295 FGSAISQL-PSSVADSNVLGILDFSRCKGLE-SFPRSLLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQS 371 (540)
Q Consensus 295 ~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~ 371 (540)
+.|.+... +..+..++.++.|++++|.... ..|..+..+++|++|++++|++.+ .|..+..+++|++|++++|+++.
T Consensus 453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~ 532 (635)
T 4g8a_A 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532 (635)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred cccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence 99999876 5667888999999999998544 467788999999999999999999 46778999999999999999998
Q ss_pred cc-hhccCCCCCCEEEecCCCCCCcCCCC----CCCccEEEecCCCCC
Q 037604 372 LP-ASIKQLSQLSSLELNDCKMLQSLPEL----PLCLKYLHLRDCKML 414 (540)
Q Consensus 372 lp-~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l~~~~~l 414 (540)
++ ..+..+++|++|++++|++.+..|.. +++|+.|++++|+..
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 76 45889999999999999988776653 368999999999844
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.8e-30 Score=257.44 Aligned_cols=304 Identities=15% Similarity=0.170 Sum_probs=222.2
Q ss_pred ccccCceeeeeccccccchhhhccchhhhhcccccccCCC-CCccccCcEEEeecCCCCCCCCCC-C-CCCCceEeecCC
Q 037604 27 NMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNG-LDYLPEKLRYLHWDTYPLRILPSN-F-KPKNLVELNLRF 103 (540)
Q Consensus 27 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~L~~L~l~~~~l~~l~~~-~-~~~~L~~L~Ls~ 103 (540)
.++++++|+++++.+ ..+|.. +..+ ++|++|++++|.+..++.. + .+++|++|++++
T Consensus 43 ~l~~l~~l~l~~~~l-------------------~~l~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 102 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-------------------RKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102 (390)
T ss_dssp GGCCCSEEEEESCEE-------------------SEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccCCceEEEecCCch-------------------hhCChhHhccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCC
Confidence 578999999999988 567765 4556 4899999999999888763 4 899999999999
Q ss_pred cchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCC-C-ccCCCcEEEccCCcCccccCCCCCCeeEEEcccCCc
Q 037604 104 SKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSN-L-HFVCPVTIDFSYCVNLIEFPQISGKITRLYLGCSAI 181 (540)
Q Consensus 104 n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~-~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l 181 (540)
|.++.+ .|..++++++|++|++++|.+. .+|.. + .+++|++|++++|.+....+
T Consensus 103 n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~---------------- 158 (390)
T 3o6n_A 103 NAIRYL-------PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED---------------- 158 (390)
T ss_dssp SCCCCC-------CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT----------------
T ss_pred CCCCcC-------CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccCh----------------
Confidence 998864 5677899999999999998766 55554 4 89999999999887654332
Q ss_pred eeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCC
Q 037604 182 EEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFEN 261 (540)
Q Consensus 182 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~ 261 (540)
..+..+++|++|++++|.+.+. .+..+++|++|++++|...+ +...++|+.|++++|.+..+|.. .
T Consensus 159 ----~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~ 224 (390)
T 3o6n_A 159 ----DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP--V 224 (390)
T ss_dssp ----TTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC--C
T ss_pred ----hhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeecccc--c
Confidence 2355566667777766654432 14456667777776654432 23345677777777777666543 2
Q ss_pred CCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC-CccccCCCCccEEEccCCCCCCcccccccCCCCCcEEe
Q 037604 262 LTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL-PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALH 340 (540)
Q Consensus 262 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 340 (540)
.++|+.|++++|.+.+. ..+..+++|++|++++|.++++ |..+..+++|++|++++|.+.+ ++..+..+++|++|+
T Consensus 225 ~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 301 (390)
T ss_dssp CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEE
T ss_pred cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEE
Confidence 46777777777766553 3566777777777777777765 6667777778888888777544 455566778888888
Q ss_pred ccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCC
Q 037604 341 IRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKML 393 (540)
Q Consensus 341 l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 393 (540)
+++|.+..+|..+..+++|+.|++++|.++.++ +..+++|++|++++|++.
T Consensus 302 L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 302 LSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence 888888888777778888888888888888775 667788888888888653
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.6e-30 Score=269.12 Aligned_cols=303 Identities=14% Similarity=0.084 Sum_probs=221.8
Q ss_pred CcEEEeecCCCCCCCCCCC--CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCC
Q 037604 73 KLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVC 149 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~~~~--~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~ 149 (540)
+++.+++++|.+..+|..+ .+++|++|++++|.++.+ .|..|+.+++|++|++++|.+.+..|..+ .+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-------ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 5666666666666666643 566666666666666643 34456666666666666666555444444 5666
Q ss_pred CcEEEccCCcCccccCCCCCCeeEEEcccCCceecccc-ccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcC
Q 037604 150 PVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSS-IECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLN 228 (540)
Q Consensus 150 L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 228 (540)
|++|++++| .++.+|.. ++.+++|++|++++|.+.+..|..|+.+++|++|++++|.+
T Consensus 125 L~~L~L~~n---------------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 125 LTVLVLERN---------------------DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp CCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCEEEeeCC---------------------CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence 666666655 44445544 46788888888888887777777788888888888888766
Q ss_pred CCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccC
Q 037604 229 LERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVAD 308 (540)
Q Consensus 229 ~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~ 308 (540)
.+. .++.+++|+.|++++|.++.++ ..++|+.|++++|.+....+ .+ .++|+.|++++|.+++. ..+..
T Consensus 184 ~~~---~~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~-~~l~~ 252 (597)
T 3oja_B 184 THV---DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT-AWLLN 252 (597)
T ss_dssp SBC---CGGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC-GGGGG
T ss_pred CCc---ChhhhhhhhhhhcccCcccccc----CCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC-hhhcc
Confidence 553 2556788888888888776542 34578888888877654322 22 36788888888888874 56788
Q ss_pred CCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEec
Q 037604 309 SNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELN 388 (540)
Q Consensus 309 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~ 388 (540)
+++|+.|++++|.+.+..|..++.+++|+.|++++|.+..+|..+..+++|+.|++++|.++.+|..+..+++|+.|+++
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 332 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECC
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECC
Confidence 88899999999888888888888889999999999988888777778889999999999988888888888899999999
Q ss_pred CCCCCCcCCCCCCCccEEEecCCCCC
Q 037604 389 DCKMLQSLPELPLCLKYLHLRDCKML 414 (540)
Q Consensus 389 ~~~~~~~~~~~~~~L~~L~l~~~~~l 414 (540)
+|.+.+..+..+++|+.|++++|+..
T Consensus 333 ~N~l~~~~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 333 HNSIVTLKLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SSCCCCCCCCTTCCCSEEECCSSCEE
T ss_pred CCCCCCcChhhcCCCCEEEeeCCCCC
Confidence 98876544455678888888887643
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.4e-29 Score=267.96 Aligned_cols=305 Identities=15% Similarity=0.151 Sum_probs=218.3
Q ss_pred ccccCceeeeeccccccchhhhccchhhhhcccccccCCC-CCccccCcEEEeecCCCCCCCCC-CC-CCCCceEeecCC
Q 037604 27 NMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNG-LDYLPEKLRYLHWDTYPLRILPS-NF-KPKNLVELNLRF 103 (540)
Q Consensus 27 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~L~~L~l~~~~l~~l~~-~~-~~~~L~~L~Ls~ 103 (540)
.+.+++.|++++|.+ ..+|.. +..+ ++|++|++++|.+..++. .+ .+++|++|+|++
T Consensus 49 ~l~~l~~l~l~~~~l-------------------~~lp~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 108 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM-------------------RKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108 (597)
T ss_dssp GGCCCSEEEESSCEE-------------------SEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCCceEEEeeCCCC-------------------CCcCHHHHccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC
Confidence 467889999999887 456664 4556 489999999999988775 34 789999999999
Q ss_pred cchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccccCCCCCCeeEEEcccCCce
Q 037604 104 SKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIE 182 (540)
Q Consensus 104 n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~ 182 (540)
|.++.+ .|..|+++++|++|++++|.+.+..+..+ .+++|++|++++|.+.+..+
T Consensus 109 n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------- 164 (597)
T 3oja_B 109 NAIRYL-------PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED----------------- 164 (597)
T ss_dssp SCCCCC-------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-----------------
T ss_pred CcCCCC-------CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-----------------
Confidence 998864 56678899999999999987664444445 88999999999887654333
Q ss_pred eccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCC
Q 037604 183 EVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENL 262 (540)
Q Consensus 183 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l 262 (540)
..+..+++|++|++++|.+.+. + +..+++|+.|++++|.+.+ +...++|+.|++++|.+..++..+ .
T Consensus 165 ---~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~ 231 (597)
T 3oja_B 165 ---DTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--N 231 (597)
T ss_dssp ---TTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--C
T ss_pred ---hhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc--C
Confidence 2355566666666666654432 1 4445666677776654432 234456777777777776555433 2
Q ss_pred CCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC-CccccCCCCccEEEccCCCCCCcccccccCCCCCcEEec
Q 037604 263 TGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL-PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHI 341 (540)
Q Consensus 263 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 341 (540)
++|+.|++++|.+.+. ..+..+++|+.|++++|.++++ |..+..+++|+.|++++|.+.+ +|..+..+++|+.|++
T Consensus 232 ~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 232 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 308 (597)
T ss_dssp SCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEEC
Confidence 5677777777766552 4566777777777777777765 5667777777777777777655 4555667788888888
Q ss_pred cCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCC
Q 037604 342 RNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKML 393 (540)
Q Consensus 342 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 393 (540)
++|.+..+|..+..+++|+.|++++|.++.++ +..+++|+.|++++|++.
T Consensus 309 s~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 309 SHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 88888888777777888888888888887765 567788888888888754
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.5e-28 Score=240.93 Aligned_cols=285 Identities=14% Similarity=0.157 Sum_probs=193.5
Q ss_pred cCcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCC
Q 037604 72 EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCP 150 (540)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L 150 (540)
.++++++++++.++.+|..+ .++|++|++++|.++.+ .|..|.++++|++|++++|.+.+..|..+ .+++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISEL-------RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCcc-------CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 47999999999999999876 47899999999999864 56689999999999999998877778778 88999
Q ss_pred cEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCC
Q 037604 151 VTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLE 230 (540)
Q Consensus 151 ~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 230 (540)
++|++++|.+.. + |..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 105 ~~L~L~~n~l~~-l--------------------~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 105 QKLYISKNHLVE-I--------------------PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp CEEECCSSCCCS-C--------------------CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred CEEECCCCcCCc-c--------------------Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 999998876542 2 22222 455555555555443333345555556666665554431
Q ss_pred --cCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCC-cccc
Q 037604 231 --RFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLP-SSVA 307 (540)
Q Consensus 231 --~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~-~~~~ 307 (540)
..+..+..+ +|++|++++|.++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++++ ..+.
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred CCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 334444555 66666666666666665443 56777777776666655566667777777777777776664 3566
Q ss_pred CCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChh-hcC------CCCCcEEEecCCCCc---ccchhcc
Q 037604 308 DSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQE-IAR------LSSLIDLHIGGNNFQ---SLPASIK 377 (540)
Q Consensus 308 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~------l~~L~~L~l~~~~l~---~lp~~l~ 377 (540)
.+++|++|++++|.+. .+|..+..+++|++|++++|.++.++.. +.. .+.|+.|++++|.+. ..|..+.
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 6777777777777655 5666677777777777777777765432 222 467888888888865 3345677
Q ss_pred CCCCCCEEEecCCC
Q 037604 378 QLSQLSSLELNDCK 391 (540)
Q Consensus 378 ~l~~L~~L~l~~~~ 391 (540)
.+++|+.+++++|.
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 78888888888774
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.2e-28 Score=238.40 Aligned_cols=286 Identities=18% Similarity=0.213 Sum_probs=207.3
Q ss_pred cCcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCC
Q 037604 72 EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCP 150 (540)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L 150 (540)
.++++++++++.++.+|..+ .+++++|++++|.++.+ .+..|+++++|++|++++|.+.+..|..+ .+++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEI-------KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCB-------CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEe-------ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 47999999999999998766 47899999999999864 44578999999999999988877778888 88999
Q ss_pred cEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCC
Q 037604 151 VTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLE 230 (540)
Q Consensus 151 ~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 230 (540)
++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|....
T Consensus 103 ~~L~Ls~n~l~---------------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 103 ERLYLSKNQLK---------------------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CEEECCSSCCS---------------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CEEECCCCcCC---------------------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 99999887653 2233222 566777777766655555556667777777777766542
Q ss_pred --cCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCC-cccc
Q 037604 231 --RFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLP-SSVA 307 (540)
Q Consensus 231 --~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~-~~~~ 307 (540)
..+..+..+++|++|++++|.++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++++ ..+.
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 445566777777777777777777766543 67777777777776666667777777777777777777663 3567
Q ss_pred CCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChh-hc------CCCCCcEEEecCCCCc---ccchhcc
Q 037604 308 DSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQE-IA------RLSSLIDLHIGGNNFQ---SLPASIK 377 (540)
Q Consensus 308 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~------~l~~L~~L~l~~~~l~---~lp~~l~ 377 (540)
.+++|++|++++|.+. .+|..+..+++|++|++++|.++.++.. +. ..+.++.+++++|.+. ..|..+.
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 7777888888877755 5666677778888888888887775543 21 2467888888888875 2345677
Q ss_pred CCCCCCEEEecCCC
Q 037604 378 QLSQLSSLELNDCK 391 (540)
Q Consensus 378 ~l~~L~~L~l~~~~ 391 (540)
.+++++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 78888888888773
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.3e-27 Score=232.25 Aligned_cols=282 Identities=16% Similarity=0.176 Sum_probs=226.9
Q ss_pred CceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccccCCCCCCeeE
Q 037604 95 NLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIEFPQISGKITR 173 (540)
Q Consensus 95 ~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 173 (540)
++++++++++.++. +|..+. +++++|++++|.+.+..+..+ .+++|++|++++|.+....
T Consensus 32 ~l~~l~~~~~~l~~--------lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------- 92 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--------VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--------- 92 (330)
T ss_dssp ETTEEECTTSCCCS--------CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC---------
T ss_pred CCeEEEecCCCccc--------cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC---------
Confidence 68889998888775 555443 688899999887666555566 7888888888776543221
Q ss_pred EEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCc
Q 037604 174 LYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAIT 253 (540)
Q Consensus 174 L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 253 (540)
|..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 93 -----------~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 93 -----------PGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp -----------TTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred -----------HHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 556788999999999999754 5665443 79999999999888777778999999999999999987
Q ss_pred ---ccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC-CccccCCCCccEEEccCCCCCCccccc
Q 037604 254 ---ELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL-PSSVADSNVLGILDFSRCKGLESFPRS 329 (540)
Q Consensus 254 ---~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~ 329 (540)
..+..+..+++|+.|++++|.+.. +|..+. ++|++|++++|.++++ +..+..+++|++|++++|.+.+..+..
T Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 159 SSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence 345678899999999999987664 555443 8999999999999987 678999999999999999988877778
Q ss_pred ccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchh-cc------CCCCCCEEEecCCCCCC-cC-CC--
Q 037604 330 LLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPAS-IK------QLSQLSSLELNDCKMLQ-SL-PE-- 398 (540)
Q Consensus 330 l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-l~------~l~~L~~L~l~~~~~~~-~~-~~-- 398 (540)
+..+++|++|++++|.+..+|..+..+++|++|++++|+++.++.. +. ..+.++.|++++|++.. .+ |.
T Consensus 236 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred ccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 8999999999999999999999999999999999999999987743 22 34789999999998753 22 22
Q ss_pred -CCCCccEEEecCCC
Q 037604 399 -LPLCLKYLHLRDCK 412 (540)
Q Consensus 399 -~~~~L~~L~l~~~~ 412 (540)
...+++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 23788999998874
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.3e-27 Score=234.22 Aligned_cols=280 Identities=15% Similarity=0.170 Sum_probs=225.5
Q ss_pred CceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccccCCCCCCeeE
Q 037604 95 NLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIEFPQISGKITR 173 (540)
Q Consensus 95 ~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 173 (540)
++++++++++.++. +|..+. ++|++|++++|.+.+..|..+ .+++|++|++++|.+
T Consensus 34 ~l~~l~~~~~~l~~--------ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l------------- 90 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--------VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI------------- 90 (332)
T ss_dssp ETTEEECCSSCCSS--------CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-------------
T ss_pred cCCEEECCCCCccc--------cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc-------------
Confidence 68889999888875 566553 688999999887765556666 788888888877654
Q ss_pred EEcccCCceec-cccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCC
Q 037604 174 LYLGCSAIEEV-PSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAI 252 (540)
Q Consensus 174 L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 252 (540)
+.+ |..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 91 --------~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 91 --------SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp --------CEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred --------CccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 333 556888999999999999765 5665454 8999999999988776667789999999999999999
Q ss_pred c---ccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCC-ccccCCCCccEEEccCCCCCCcccc
Q 037604 253 T---ELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLP-SSVADSNVLGILDFSRCKGLESFPR 328 (540)
Q Consensus 253 ~---~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~ 328 (540)
+ ..+..+..+ +|+.|++++|.+.+ +|..+. ++|++|++++|.+++++ ..+..+++|++|++++|.+.+..+.
T Consensus 160 ~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 235 (332)
T 2ft3_A 160 ENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235 (332)
T ss_dssp BGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT
T ss_pred ccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh
Confidence 7 345556666 99999999988765 565543 79999999999999885 6789999999999999999888777
Q ss_pred cccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchh-ccC------CCCCCEEEecCCCCC--CcCCC-
Q 037604 329 SLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPAS-IKQ------LSQLSSLELNDCKML--QSLPE- 398 (540)
Q Consensus 329 ~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-l~~------l~~L~~L~l~~~~~~--~~~~~- 398 (540)
.+..+++|++|++++|.+..+|..+..+++|+.|++++|+++.++.. +.. .++|+.|++++|+.. +..|.
T Consensus 236 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp GGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred HhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence 89999999999999999999999999999999999999999977643 322 477999999999876 23333
Q ss_pred --CCCCccEEEecCCC
Q 037604 399 --LPLCLKYLHLRDCK 412 (540)
Q Consensus 399 --~~~~L~~L~l~~~~ 412 (540)
..++|+.+++++|+
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 23788999998875
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.8e-31 Score=274.11 Aligned_cols=342 Identities=18% Similarity=0.209 Sum_probs=219.5
Q ss_pred cccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCC-----CCCCCC-CCCCceEeec
Q 037604 28 MSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLR-----ILPSNF-KPKNLVELNL 101 (540)
Q Consensus 28 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~-----~l~~~~-~~~~L~~L~L 101 (540)
.++|++|++++|++++ ......+..+ ++|++|++++|.++ .++..+ .+++|++|++
T Consensus 2 ~~~l~~L~Ls~~~l~~-----------------~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L 63 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSD-----------------ARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63 (461)
T ss_dssp CEEEEEEEEESCCCCH-----------------HHHHHHHHHH-TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CccceehhhhhcccCc-----------------hhHHHHHhhc-CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeC
Confidence 4678999999998741 1122224556 48999999999986 344444 6789999999
Q ss_pred CCcchhhhhccccCcCCCcccCCC----CCCEEecCCCCCCc----ccCCCC-ccCCCcEEEccCCcCccccC-------
Q 037604 102 RFSKVEQLWEGEKACVPSSIQNFK----YLSMLNFEGCKSLR----SFPSNL-HFVCPVTIDFSYCVNLIEFP------- 165 (540)
Q Consensus 102 s~n~i~~l~~g~~~~lp~~~~~l~----~L~~L~L~~~~~~~----~~~~~~-~l~~L~~L~L~~~~~~~~~~------- 165 (540)
++|.+... +. ......++ +|++|++++|.+.. .++..+ .+++|++|++++|.+....+
T Consensus 64 s~n~l~~~--~~----~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 137 (461)
T 1z7x_W 64 RSNELGDV--GV----HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137 (461)
T ss_dssp TTCCCHHH--HH----HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred CCCcCChH--HH----HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH
Confidence 99988753 11 11112333 79999999988763 457777 88899999999988653222
Q ss_pred -CCCCCeeEEEcccCCcee-----ccccccCCCCCCEEEcccCccccccchhcC-----CCCCCcEEeccCCcCCCc---
Q 037604 166 -QISGKITRLYLGCSAIEE-----VPSSIECLTDLEVLDLMYCKRLKRISTRFC-----KLRSLVDLCLNGCLNLER--- 231 (540)
Q Consensus 166 -~~~~~l~~L~L~~~~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~--- 231 (540)
....++++|++++|.++. ++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+.+.
T Consensus 138 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 123457788887777663 345566677888888888775543333232 255788888888766543
Q ss_pred -CchhhhCCCCCCEEEcCCCCCccc------CcccCCCCCCCeEccCCCcCCCc----CCCCCCCCCCCcEEEccCCCCC
Q 037604 232 -FPEILEKMEHLKCINLDRTAITEL------PSSFENLTGLKGLSVSDCSKLDK----LPDNIGNLESLHHMSAFGSAIS 300 (540)
Q Consensus 232 -~~~~l~~l~~L~~L~l~~~~l~~l------~~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~l~ 300 (540)
++..+..+++|++|++++|.++.. +..+..+++|++|++++|.+... ++..+..+++|++|++++|.++
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 456666777888888888776632 12233567777777777765543 4445555677777777777665
Q ss_pred CC-----Cccc-cCCCCccEEEccCCCCCCc----ccccccCCCCCcEEeccCCCCCCC-Chhh----cC-CCCCcEEEe
Q 037604 301 QL-----PSSV-ADSNVLGILDFSRCKGLES----FPRSLLGLSSLVALHIRNFAVMEI-PQEI----AR-LSSLIDLHI 364 (540)
Q Consensus 301 ~l-----~~~~-~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~-~~~~----~~-l~~L~~L~l 364 (540)
+. ...+ ...++|++|++++|.+.+. ++..+..+++|++|++++|.+.+. +..+ .. .++|++|++
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 32 1111 1225677777777776544 344455667777777777766551 2222 21 567777777
Q ss_pred cCCCCc-----ccchhccCCCCCCEEEecCCCCC
Q 037604 365 GGNNFQ-----SLPASIKQLSQLSSLELNDCKML 393 (540)
Q Consensus 365 ~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~ 393 (540)
++|.++ .+|..+..+++|++|++++|++.
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 777766 45666666777777777777644
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.4e-28 Score=238.51 Aligned_cols=245 Identities=20% Similarity=0.257 Sum_probs=198.7
Q ss_pred CCeeEEEcccCCce---eccccccCCCCCCEEEccc-CccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCE
Q 037604 169 GKITRLYLGCSAIE---EVPSSIECLTDLEVLDLMY-CKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKC 244 (540)
Q Consensus 169 ~~l~~L~L~~~~l~---~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 244 (540)
++++.|+++++.++ .+|..+..+++|++|++++ |.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45666666666666 5677888889999999984 7777788888888899999999988887788888888899999
Q ss_pred EEcCCCCCc-ccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCC-CCcEEEccCCCCC-CCCccccCCCCccEEEccCCC
Q 037604 245 INLDRTAIT-ELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLE-SLHHMSAFGSAIS-QLPSSVADSNVLGILDFSRCK 321 (540)
Q Consensus 245 L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~ 321 (540)
|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.++ .+|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999998888 6788888888999999988888878888888887 8889999888887 4577777776 8889998888
Q ss_pred CCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCc-ccchhccCCCCCCEEEecCCCCCCcCCCC-
Q 037604 322 GLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQ-SLPASIKQLSQLSSLELNDCKMLQSLPEL- 399 (540)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~- 399 (540)
+.+..+..+..+++|++|++++|.+...++.+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 8877888888888899999998888876566788888999999998887 77888888888999999888877777753
Q ss_pred -CCCccEEEecCCCCC
Q 037604 400 -PLCLKYLHLRDCKML 414 (540)
Q Consensus 400 -~~~L~~L~l~~~~~l 414 (540)
+++|+.+++++|+.+
T Consensus 289 ~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCL 304 (313)
T ss_dssp TGGGSCGGGTCSSSEE
T ss_pred cccccChHHhcCCCCc
Confidence 245555566665543
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.9e-28 Score=236.38 Aligned_cols=245 Identities=18% Similarity=0.274 Sum_probs=117.8
Q ss_pred CCceEeecCCcchhh--hhccccCcCCCcccCCCCCCEEecCC-CCCCcccCCCC-ccCCCcEEEccCCcCccccCCCCC
Q 037604 94 KNLVELNLRFSKVEQ--LWEGEKACVPSSIQNFKYLSMLNFEG-CKSLRSFPSNL-HFVCPVTIDFSYCVNLIEFPQISG 169 (540)
Q Consensus 94 ~~L~~L~Ls~n~i~~--l~~g~~~~lp~~~~~l~~L~~L~L~~-~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~ 169 (540)
.++++|++++|.++. . +|..+.++++|++|++++ |.+.+.+|..+ .+++|++|++++|.+.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~-------~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~------- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP-------IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG------- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEE-------CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-------
T ss_pred ceEEEEECCCCCccCCcc-------cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-------
Confidence 456666666666542 1 555666666666666663 44444444444 44444444444433221
Q ss_pred CeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCC-CCCEEEcC
Q 037604 170 KITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKME-HLKCINLD 248 (540)
Q Consensus 170 ~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~ 248 (540)
.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|+++
T Consensus 116 -------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 116 -------------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp -------------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred -------------cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence 2233344445555555555544444444444455555555555444444444444444 44555554
Q ss_pred CCCCc-ccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCccc
Q 037604 249 RTAIT-ELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFP 327 (540)
Q Consensus 249 ~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 327 (540)
+|.++ .+|..+..++ |+.|++++|.+.+..|..+..+++|+.|++++|.++. .++
T Consensus 183 ~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~ 238 (313)
T 1ogq_A 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-----------------------DLG 238 (313)
T ss_dssp SSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC-----------------------BGG
T ss_pred CCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee-----------------------ecC
Confidence 44444 3344444443 4444444444444444444444444444444444433 332
Q ss_pred ccccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCCCc-ccchhccCCCCCCEEEecCCC
Q 037604 328 RSLLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQ-SLPASIKQLSQLSSLELNDCK 391 (540)
Q Consensus 328 ~~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~ 391 (540)
. +..+++|++|++++|.+.+ +|..+..+++|+.|++++|+++ .+|.. ..+++|+.+++++|+
T Consensus 239 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred c-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 2 3344455555555555442 4444555555555555555544 33432 445555555555554
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=3.7e-30 Score=264.36 Aligned_cols=345 Identities=16% Similarity=0.137 Sum_probs=172.0
Q ss_pred ccCcEEEeecCCCCCCCCCC--C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC--
Q 037604 71 PEKLRYLHWDTYPLRILPSN--F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-- 145 (540)
Q Consensus 71 ~~~L~~L~l~~~~l~~l~~~--~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-- 145 (540)
|++|++|+++++.++..+.. + .+++|++|++++|.++.. +... ++..+..+++|++|++++|.+.+..+..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--~~~~-l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA--RCKD-ISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH--HHHH-HHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH--HHHH-HHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 45889999999988654432 2 678899999999988742 1111 56677888999999999887655333322
Q ss_pred ccC----CCcEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhc-----CCCC
Q 037604 146 HFV----CPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRF-----CKLR 216 (540)
Q Consensus 146 ~l~----~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l-----~~l~ 216 (540)
.++ +|++|++++|.+.... ...++..+..+++|++|++++|.+....+..+ ...+
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~----------------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAG----------------CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGG----------------HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred HHhhCCCceeEEEccCCCCCHHH----------------HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 333 5888888877654211 01223344445555555555554332222111 1133
Q ss_pred CCcEEeccCCcCCCc----CchhhhCCCCCCEEEcCCCCCccc-----Cccc-CCCCCCCeEccCCCcCCCc----CCCC
Q 037604 217 SLVDLCLNGCLNLER----FPEILEKMEHLKCINLDRTAITEL-----PSSF-ENLTGLKGLSVSDCSKLDK----LPDN 282 (540)
Q Consensus 217 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~l-----~~~~-~~l~~L~~L~l~~~~~~~~----l~~~ 282 (540)
+|++|++++|.+.+. ++..+..+++|++|++++|.++.. ...+ ...++|++|++++|.+... ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 455555555544332 233344445555555555554421 1111 1233555555555544332 2333
Q ss_pred CCCCCCCcEEEccCCCCCCC------CccccCCCCccEEEccCCCCCCc----ccccccCCCCCcEEeccCCCCCC----
Q 037604 283 IGNLESLHHMSAFGSAISQL------PSSVADSNVLGILDFSRCKGLES----FPRSLLGLSSLVALHIRNFAVME---- 348 (540)
Q Consensus 283 ~~~l~~L~~L~l~~~~l~~l------~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~---- 348 (540)
+..+++|++|++++|.+++. +..+..+++|++|++++|.+... ++..+..+++|++|++++|.+.+
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 34445555555555544431 11122345555555555554432 33344445555555555555543
Q ss_pred -CChhhc-CCCCCcEEEecCCCCcc-----cchhccCCCCCCEEEecCCCCCCcCC--------CCCCCccEEEecCCCC
Q 037604 349 -IPQEIA-RLSSLIDLHIGGNNFQS-----LPASIKQLSQLSSLELNDCKMLQSLP--------ELPLCLKYLHLRDCKM 413 (540)
Q Consensus 349 -~~~~~~-~l~~L~~L~l~~~~l~~-----lp~~l~~l~~L~~L~l~~~~~~~~~~--------~~~~~L~~L~l~~~~~ 413 (540)
+...+. ..++|++|++++|.++. ++..+..+++|++|++++|.+....+ ...++|++|++++|..
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 111111 12455555555555542 33444455555555555554322111 0124555555555543
Q ss_pred CC----cCCCC---CCCccEEeecCCCC
Q 037604 414 LQ----SLPAL---PLCLESLDLRDCNM 434 (540)
Q Consensus 414 l~----~~~~~---~~~L~~L~l~~~~~ 434 (540)
.. .++.. ..+|++|++++|+.
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 32 23321 23466666666654
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=8.2e-26 Score=220.41 Aligned_cols=219 Identities=21% Similarity=0.330 Sum_probs=154.7
Q ss_pred CCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcC
Q 037604 169 GKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLD 248 (540)
Q Consensus 169 ~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 248 (540)
..++.|+++++.++.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 3445555555666666777777777777777777655 66666777777777777776655 567677777777777777
Q ss_pred CCC-CcccCcccCC---------CCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEcc
Q 037604 249 RTA-ITELPSSFEN---------LTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFS 318 (540)
Q Consensus 249 ~~~-l~~l~~~~~~---------l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 318 (540)
+|. +..+|..+.. +++|++|++++|.+. .+|..++.+++|++|++++|.++++|..+..+++|++|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 743 3355555443 777777777776655 56666777777777777777777777777777777777777
Q ss_pred CCCCCCcccccccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCC-CcccchhccCCCCCCEEEecCC
Q 037604 319 RCKGLESFPRSLLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNN-FQSLPASIKQLSQLSSLELNDC 390 (540)
Q Consensus 319 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~-l~~lp~~l~~l~~L~~L~l~~~ 390 (540)
+|.+.+.+|..++.+++|++|++++|.+.+ +|..+..+++|+.|++++|+ .+.+|..+..+++|+.+++..+
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 777777777777777777777777776555 66677777777777777766 3467777777777777777654
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.2e-26 Score=220.82 Aligned_cols=227 Identities=18% Similarity=0.305 Sum_probs=122.5
Q ss_pred CcEEEeecCCCCCCCCCCC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCC
Q 037604 73 KLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCP 150 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~~~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L 150 (540)
++++|++++|.++.+|..+ .+++|++|++++|.++. +|..++++++|++|++++|.+. .+|..+ .+++|
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~--------lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L 152 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME--------LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC--------CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc--------hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence 4555555555555555543 45555555555555542 4555555555555555554433 444444 44444
Q ss_pred cEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCC
Q 037604 151 VTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLE 230 (540)
Q Consensus 151 ~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 230 (540)
++|++++|...+.+|..+... .++.. +.++++|++|++++|.+.
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~-----------~~~~~------------------------~~~l~~L~~L~L~~n~l~- 196 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLAST-----------DASGE------------------------HQGLVNLQSLRLEWTGIR- 196 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEE-----------C-CCC------------------------EEESTTCCEEEEEEECCC-
T ss_pred CEEECCCCCCccccChhHhhc-----------cchhh------------------------hccCCCCCEEECcCCCcC-
Confidence 444444443333332211100 00011 223566666666665444
Q ss_pred cCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCC-CCCccccCC
Q 037604 231 RFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAIS-QLPSSVADS 309 (540)
Q Consensus 231 ~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~l 309 (540)
.+|..++.+++|++|++++|.++.+|..+..+++|++|++++|...+.+|..++.+++|++|++++|.+. .+|..+..+
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence 5566666666666677766666666666666677777777776666666666666666666666665443 235555555
Q ss_pred CCccEEEccCCCCCCcccccccCCCCCcEEeccCC
Q 037604 310 NVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNF 344 (540)
Q Consensus 310 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 344 (540)
++|++|++++|...+.+|..++.+++|+.+++..+
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 55555555555555555555555555555555443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=8.5e-26 Score=218.68 Aligned_cols=246 Identities=20% Similarity=0.242 Sum_probs=179.7
Q ss_pred cEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcc--cCCCC-ccCCC
Q 037604 74 LRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRS--FPSNL-HFVCP 150 (540)
Q Consensus 74 L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~--~~~~~-~l~~L 150 (540)
-+.++++++.++.+|..+ .++|++|++++|.++.+ .+..|.++++|++|++++|.+... .+..+ .+++|
T Consensus 9 ~~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSL-------PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCC-------CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred CCEEEcCCCCcccCCCCC-CCCCCEEECCCCccCcc-------CHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 346788888888888755 36888899998888753 223467888888888888765422 23333 55555
Q ss_pred cEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccc-hhcCCCCCCcEEeccCCcCC
Q 037604 151 VTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRIS-TRFCKLRSLVDLCLNGCLNL 229 (540)
Q Consensus 151 ~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 229 (540)
++|++++| .++.+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 81 ~~L~Ls~n---------------------~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 81 KYLDLSFN---------------------GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp CEEECCSC---------------------SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred CEEECCCC---------------------ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC
Confidence 55555554 445556667788888888888887655443 45777888888888888777
Q ss_pred CcCchhhhCCCCCCEEEcCCCCCcc--cCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCc-cc
Q 037604 230 ERFPEILEKMEHLKCINLDRTAITE--LPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPS-SV 306 (540)
Q Consensus 230 ~~~~~~l~~l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~ 306 (540)
+..+..+..+++|++|++++|.++. +|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++++. .+
T Consensus 140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 6677777888888888888888774 67778888888888888887777767777788888888888888877643 56
Q ss_pred cCCCCccEEEccCCCCCCcccccccCCC-CCcEEeccCCCCCC
Q 037604 307 ADSNVLGILDFSRCKGLESFPRSLLGLS-SLVALHIRNFAVME 348 (540)
Q Consensus 307 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~ 348 (540)
..+++|++|++++|.+.+..+..+..++ +|++|++++|.+..
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 6677777777777777776666666663 67777777776654
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1e-23 Score=221.19 Aligned_cols=262 Identities=20% Similarity=0.221 Sum_probs=165.3
Q ss_pred cCcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCCccCCCc
Q 037604 72 EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNLHFVCPV 151 (540)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~ 151 (540)
.++++|++++|.++.+|..+. ++|++|++++|.++. +|. .+++|++|++++|.+. .+|. .+++|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~--------lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~ 104 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS--------LPA---LPPELRTLEVSGNQLT-SLPV--LPPGLL 104 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSC--------CCC---CCTTCCEEEECSCCCS-CCCC--CCTTCC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCC--------CCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCC
Confidence 469999999999999998765 899999999999885 555 5788999999987754 4555 567777
Q ss_pred EEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCc
Q 037604 152 TIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLER 231 (540)
Q Consensus 152 ~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 231 (540)
+|++++|.+.. +|..+.+++.|++++|.++.+|.. +++|++|++++|.+ .+
T Consensus 105 ~L~Ls~N~l~~-l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l------------------------~~- 155 (622)
T 3g06_A 105 ELSIFSNPLTH-LPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL------------------------AS- 155 (622)
T ss_dssp EEEECSCCCCC-CCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC------------------------SC-
T ss_pred EEECcCCcCCC-CCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC------------------------CC-
Confidence 77777775433 333444555555555555555432 24455555555433 22
Q ss_pred CchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCC
Q 037604 232 FPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNV 311 (540)
Q Consensus 232 ~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~ 311 (540)
+|. .+.+|+.|++++|.++.+| ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|.. +++
T Consensus 156 l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~ 222 (622)
T 3g06_A 156 LPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSG 222 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTT
T ss_pred cCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCC
Confidence 221 2244555555555555555 234555556665554433 332 135566666666666655532 255
Q ss_pred ccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCC
Q 037604 312 LGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCK 391 (540)
Q Consensus 312 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~ 391 (540)
|+.|++++|.+.+ +| ..+++|++|++++|.+..+|. .+++|+.|++++|+++.+|..+..+++|+.|++++|+
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 6666666666544 33 345667777777777776665 5567777777777777777777777777777777777
Q ss_pred CCCcCC
Q 037604 392 MLQSLP 397 (540)
Q Consensus 392 ~~~~~~ 397 (540)
+.+..|
T Consensus 296 l~~~~~ 301 (622)
T 3g06_A 296 LSERTL 301 (622)
T ss_dssp CCHHHH
T ss_pred CCCcCH
Confidence 655444
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=6.2e-25 Score=210.26 Aligned_cols=220 Identities=22% Similarity=0.252 Sum_probs=151.1
Q ss_pred EEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCC-
Q 037604 173 RLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTA- 251 (540)
Q Consensus 173 ~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~- 251 (540)
.++.+.+.++.+|..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 4444555555665433 3567777777766555444556667777777777766655556666777777777777775
Q ss_pred Cccc-CcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCc-cccCCCCccEEEccCCCCCCccccc
Q 037604 252 ITEL-PSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPS-SVADSNVLGILDFSRCKGLESFPRS 329 (540)
Q Consensus 252 l~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 329 (540)
++.+ |..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 6655 4456677777777777777666666667777777777777777777644 3667777777777777766555555
Q ss_pred ccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCCCcccch-hccCCCCCCEEEecCCCCCC
Q 037604 330 LLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQSLPA-SIKQLSQLSSLELNDCKMLQ 394 (540)
Q Consensus 330 l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~ 394 (540)
+..+++|++|++++|.+.+ .|..+..+++|+.|++++|.++.++. .+..+++|++|++++|++..
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 7777788888888887777 46677778888888888888776664 46777888888888876543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=5.9e-25 Score=217.19 Aligned_cols=270 Identities=17% Similarity=0.088 Sum_probs=208.7
Q ss_pred cCCCcEEEccCCcCccccCCCCCCeeEEEcccCCceeccc-cccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccC
Q 037604 147 FVCPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPS-SIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNG 225 (540)
Q Consensus 147 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 225 (540)
|+.....+.+++.+.........++++|++++|.++.++. .+..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3333445555544432222344567777777778887765 688899999999999987777677799999999999999
Q ss_pred CcCCCcCchhhhCCCCCCEEEcCCCCCcccCc--ccCCCCCCCeEccCCCcCCC-cCCCCCCCCCCCcEEEccCCCCCCC
Q 037604 226 CLNLERFPEILEKMEHLKCINLDRTAITELPS--SFENLTGLKGLSVSDCSKLD-KLPDNIGNLESLHHMSAFGSAISQL 302 (540)
Q Consensus 226 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~l~~l 302 (540)
|.+.+..+..++.+++|++|++++|.++.+|. .+..+++|++|++++|...+ ..+..+..+++|++|++++|.++++
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 87776555558899999999999999998887 68889999999999985444 4456788999999999999999876
Q ss_pred -CccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCCh-h---hcCCCCCcEEEecCCCCc-----cc
Q 037604 303 -PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQ-E---IARLSSLIDLHIGGNNFQ-----SL 372 (540)
Q Consensus 303 -~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~---~~~l~~L~~L~l~~~~l~-----~l 372 (540)
|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+.+. . ....+.++.++++++.++ .+
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 7788899999999999998654333334568899999999999887432 1 234667888899888876 57
Q ss_pred chhccCCCCCCEEEecCCCCCCcCCC----CCCCccEEEecCCCCCCcC
Q 037604 373 PASIKQLSQLSSLELNDCKMLQSLPE----LPLCLKYLHLRDCKMLQSL 417 (540)
Q Consensus 373 p~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~~ 417 (540)
|..+..+++|++|++++|.+. .+|. ..++|++|++++|+.....
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 778889999999999999765 5664 2388999999999865543
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=2.7e-24 Score=208.09 Aligned_cols=223 Identities=20% Similarity=0.193 Sum_probs=151.6
Q ss_pred EEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCc--CchhhhCCCCCCEEEcCCC
Q 037604 173 RLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLER--FPEILEKMEHLKCINLDRT 250 (540)
Q Consensus 173 ~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~ 250 (540)
.++.+.+.++.+|..+. +++++|++++|.+....+..|.++++|++|++++|.+... .+..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 44555555666665442 5677777777665433233356677777777777655422 2455666777777777777
Q ss_pred CCcccCcccCCCCCCCeEccCCCcCCCcCC-CCCCCCCCCcEEEccCCCCCCC-CccccCCCCccEEEccCCCCCC-ccc
Q 037604 251 AITELPSSFENLTGLKGLSVSDCSKLDKLP-DNIGNLESLHHMSAFGSAISQL-PSSVADSNVLGILDFSRCKGLE-SFP 327 (540)
Q Consensus 251 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~-~~~ 327 (540)
.++.+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+... +..+..+++|++|++++|.+.+ .+|
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 777777777777777777777776655433 4566777777777777777654 4456667777777777777655 456
Q ss_pred ccccCCCCCcEEeccCCCCCCC-ChhhcCCCCCcEEEecCCCCcccch-hccCCCCCCEEEecCCCCCCcCC
Q 037604 328 RSLLGLSSLVALHIRNFAVMEI-PQEIARLSSLIDLHIGGNNFQSLPA-SIKQLSQLSSLELNDCKMLQSLP 397 (540)
Q Consensus 328 ~~l~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~ 397 (540)
..+..+++|++|++++|.+.++ +..+..+++|+.|++++|.++.++. .+..+++|++|++++|++.+..|
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 6677777888888888877774 5667777888888888888776654 56777788888888887665544
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=214.26 Aligned_cols=241 Identities=21% Similarity=0.227 Sum_probs=201.7
Q ss_pred CcEEEccCCcCccccC-CCCCCeeEEEcccCCceecc-ccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCc
Q 037604 150 PVTIDFSYCVNLIEFP-QISGKITRLYLGCSAIEEVP-SSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCL 227 (540)
Q Consensus 150 L~~L~L~~~~~~~~~~-~~~~~l~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 227 (540)
.+.++.++..+ ..+| ....+++.|++++|.++.++ ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 45 ~~~v~c~~~~l-~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNL-REVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCC-SSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCc-CcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 34555555433 3334 34456688888888888665 668899999999999998877777789999999999999988
Q ss_pred CCCcCchhhhCCCCCCEEEcCCCCCcccCc-ccCCCCCCCeEccCCCcCCCcCCC-CCCCCCCCcEEEccCCCCCCCCcc
Q 037604 228 NLERFPEILEKMEHLKCINLDRTAITELPS-SFENLTGLKGLSVSDCSKLDKLPD-NIGNLESLHHMSAFGSAISQLPSS 305 (540)
Q Consensus 228 ~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~l~~~ 305 (540)
+.+..+..+..+++|++|++++|.++.++. .+..+++|+.|++++|...+.++. .+..+++|++|++++|.++.+|.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN- 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-
Confidence 776656678999999999999999997776 588899999999999777776665 68889999999999999998874
Q ss_pred ccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCCCcccchh-ccCCCCCC
Q 037604 306 VADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQSLPAS-IKQLSQLS 383 (540)
Q Consensus 306 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~ 383 (540)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|+++.+|.. +..+++|+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 7888999999999999888888889999999999999999998 456688899999999999999988754 57889999
Q ss_pred EEEecCCCC
Q 037604 384 SLELNDCKM 392 (540)
Q Consensus 384 ~L~l~~~~~ 392 (540)
.|++++|++
T Consensus 283 ~L~L~~Np~ 291 (440)
T 3zyj_A 283 RIHLHHNPW 291 (440)
T ss_dssp EEECCSSCE
T ss_pred EEEcCCCCc
Confidence 999999874
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.8e-23 Score=217.77 Aligned_cols=244 Identities=20% Similarity=0.210 Sum_probs=166.2
Q ss_pred ccCCCCCccccCcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCccc
Q 037604 62 QLPNGLDYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSF 141 (540)
Q Consensus 62 ~~~~~~~~l~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~ 141 (540)
.+|..+ +++|++|++++|.++.+|. .+++|++|+|++|.++. +|. .+++|++|++++|.+.+ +
T Consensus 54 ~lp~~l---~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--------lp~---~l~~L~~L~Ls~N~l~~-l 116 (622)
T 3g06_A 54 TLPDCL---PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--------LPV---LPPGLLELSIFSNPLTH-L 116 (622)
T ss_dssp CCCSCC---CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--------CCC---CCTTCCEEEECSCCCCC-C
T ss_pred ccChhh---CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--------CCC---CCCCCCEEECcCCcCCC-C
Confidence 345444 3599999999999999998 57999999999999985 555 67999999999987654 5
Q ss_pred CCCCccCCCcEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEE
Q 037604 142 PSNLHFVCPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDL 221 (540)
Q Consensus 142 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 221 (540)
|. .+++|+.|++++|.+. .+|..+.+|++|++++|.++.+|.. +++|+.|++++|.+.+ +| ..+++|+.|
T Consensus 117 ~~--~l~~L~~L~L~~N~l~-~lp~~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l~---~~~~~L~~L 186 (622)
T 3g06_A 117 PA--LPSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-LP---MLPSGLQEL 186 (622)
T ss_dssp CC--CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEE
T ss_pred CC--CCCCcCEEECCCCCCC-cCCCCCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCC-Cc---ccCCCCcEE
Confidence 55 6789999999999765 4777789999999999999988753 4678889999887543 44 335667777
Q ss_pred eccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCC
Q 037604 222 CLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQ 301 (540)
Q Consensus 222 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~ 301 (540)
++++|.+.+ +|. .+++|+.|++++|.++.+|.. +++|+.|++++|.+.+ +| ..+++|+.|++++|.++.
T Consensus 187 ~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 187 SVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred ECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc
Confidence 777765443 332 235666666666666655532 2455555555554433 33 223445555555554444
Q ss_pred CCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCc
Q 037604 302 LPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 302 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 370 (540)
+|. .+++|+.|++++|.+..+|..+..+++|+.|++++|.++
T Consensus 256 lp~---------------------------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 256 LPM---------------------------LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCC---------------------------CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCc---------------------------ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 433 344555566666655555555666666666666666654
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.7e-23 Score=213.81 Aligned_cols=240 Identities=25% Similarity=0.246 Sum_probs=200.2
Q ss_pred cEEEccCCcCccccC-CCCCCeeEEEcccCCceec-cccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcC
Q 037604 151 VTIDFSYCVNLIEFP-QISGKITRLYLGCSAIEEV-PSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLN 228 (540)
Q Consensus 151 ~~L~L~~~~~~~~~~-~~~~~l~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 228 (540)
..++.++..+. .+| ....++++|++++|.++.+ +..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+
T Consensus 57 ~~v~c~~~~l~-~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp CEEECCSSCCS-SCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEECCCCcC-ccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 45555544332 333 3445677888888888866 46688999999999999988777778899999999999999887
Q ss_pred CCcCchhhhCCCCCCEEEcCCCCCcccCc-ccCCCCCCCeEccCCCcCCCcCCC-CCCCCCCCcEEEccCCCCCCCCccc
Q 037604 229 LERFPEILEKMEHLKCINLDRTAITELPS-SFENLTGLKGLSVSDCSKLDKLPD-NIGNLESLHHMSAFGSAISQLPSSV 306 (540)
Q Consensus 229 ~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~l~~~~ 306 (540)
....+..+..+++|++|++++|.++.++. .+..+++|+.|++++|...+.++. .+..+++|++|++++|.++++| .+
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~ 214 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NL 214 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CC
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cc
Confidence 76666678899999999999999998776 588899999999999877777665 5788999999999999999886 47
Q ss_pred cCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCCCcccchh-ccCCCCCCE
Q 037604 307 ADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNNFQSLPAS-IKQLSQLSS 384 (540)
Q Consensus 307 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~ 384 (540)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|+++.+|.. +..+++|+.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 888999999999999988888889999999999999999988 466788899999999999999988754 578899999
Q ss_pred EEecCCCC
Q 037604 385 LELNDCKM 392 (540)
Q Consensus 385 L~l~~~~~ 392 (540)
|++++|++
T Consensus 295 L~L~~Np~ 302 (452)
T 3zyi_A 295 LHLHHNPW 302 (452)
T ss_dssp EECCSSCE
T ss_pred EEccCCCc
Confidence 99999874
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=8.8e-24 Score=215.16 Aligned_cols=244 Identities=18% Similarity=0.172 Sum_probs=166.5
Q ss_pred cCcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCC
Q 037604 72 EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCP 150 (540)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L 150 (540)
...+.++.++..++.+|..+ .+++++|+|++|.++.+ .+..|.++++|++|+|++|.+.+..+..+ .+++|
T Consensus 43 ~~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 43 NQFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQII-------KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp TTSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEE-------CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCee-------CHHHhhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence 35678899999999999876 36899999999999865 55778899999999999987766555666 77888
Q ss_pred cEEEccCCcCccccCCCCCCeeEEEcccCCceeccc-cccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCC
Q 037604 151 VTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPS-SIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNL 229 (540)
Q Consensus 151 ~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 229 (540)
++|++++|.+. .++. .+..+++|++|++++|.+....+..|..+++|++|++++|...
T Consensus 115 ~~L~L~~n~l~---------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l 173 (440)
T 3zyj_A 115 NTLELFDNRLT---------------------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173 (440)
T ss_dssp CEEECCSSCCS---------------------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC
T ss_pred CEEECCCCcCC---------------------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc
Confidence 88888776543 2232 4666777888888877765555556777778888888776666
Q ss_pred CcCch-hhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC-Ccccc
Q 037604 230 ERFPE-ILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL-PSSVA 307 (540)
Q Consensus 230 ~~~~~-~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~ 307 (540)
+.++. .+..+++|++|++++|.++.+|. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.+ +..+.
T Consensus 174 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 174 SYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp CEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred ceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc
Confidence 55543 56777778888887777777763 66666777777777666665566666666666666666666554 33444
Q ss_pred CCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCC
Q 037604 308 DSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFA 345 (540)
Q Consensus 308 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 345 (540)
.+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 55555555555555444444444445555555555444
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=9.7e-24 Score=215.62 Aligned_cols=244 Identities=20% Similarity=0.199 Sum_probs=159.4
Q ss_pred CcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCc
Q 037604 73 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPV 151 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~ 151 (540)
..+.++.++..++.+|..+ .+++++|+|++|.++.+ .|..|.++++|++|++++|.+.+..+..+ .+++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMI-------QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceE-------CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCC
Confidence 5678889999999998765 36899999999999865 67788999999999999988776666777 788888
Q ss_pred EEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCc
Q 037604 152 TIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLER 231 (540)
Q Consensus 152 ~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 231 (540)
+|++++|.+....+ ..+..+++|++|++++|.+....+..|..+++|++|++++|...+.
T Consensus 127 ~L~L~~n~l~~~~~--------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 127 TLELFDNWLTVIPS--------------------GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186 (452)
T ss_dssp EEECCSSCCSBCCT--------------------TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred EEECCCCcCCccCh--------------------hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc
Confidence 88888776532221 2355667777777777765544444566777777777777655555
Q ss_pred Cch-hhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC-CccccCC
Q 037604 232 FPE-ILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL-PSSVADS 309 (540)
Q Consensus 232 ~~~-~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l 309 (540)
++. .+..+++|++|++++|.++.+|. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.+ +..+..+
T Consensus 187 i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 187 ISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 543 46667777777777777766653 55566666666666665555555555556666666655555544 3334444
Q ss_pred CCccEEEccCCCCCCcccccccCCCCCcEEeccCCC
Q 037604 310 NVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFA 345 (540)
Q Consensus 310 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 345 (540)
++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 555555555554443333334444444444444443
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=1.8e-26 Score=244.61 Aligned_cols=383 Identities=14% Similarity=0.074 Sum_probs=226.1
Q ss_pred hhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCc-cccCcEEEeecCCCC-C--CCCCCC-CCCCceEe
Q 037604 25 FTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDY-LPEKLRYLHWDTYPL-R--ILPSNF-KPKNLVEL 99 (540)
Q Consensus 25 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~L~~L~l~~~~l-~--~l~~~~-~~~~L~~L 99 (540)
+.++++|++|++++|.+++ ..+..+.. +|.+|++|++++|.- . .++... .+++|++|
T Consensus 108 ~~~~~~L~~L~L~~~~i~~------------------~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L 169 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSD------------------LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169 (592)
T ss_dssp HHHCTTCCEEEEESCBCCH------------------HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEE
T ss_pred HhhCCCCCeEEeeccEecH------------------HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEE
Confidence 3489999999999998752 11222222 333477777777752 1 122222 56777778
Q ss_pred ecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCC----cccCCCC-ccCCCcEEEccCCcCccccC---CCCCCe
Q 037604 100 NLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSL----RSFPSNL-HFVCPVTIDFSYCVNLIEFP---QISGKI 171 (540)
Q Consensus 100 ~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~----~~~~~~~-~l~~L~~L~L~~~~~~~~~~---~~~~~l 171 (540)
+|++|.++.. |... ++..+..+++|++|++++|... +.++..+ .+++|++|++++|...+ ++ ....++
T Consensus 170 ~L~~~~~~~~--~~~~-l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L 245 (592)
T 3ogk_B 170 LMEESSFSEK--DGKW-LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANL 245 (592)
T ss_dssp ECTTCEEECC--CSHH-HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTC
T ss_pred ECccccccCc--chhH-HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHH
Confidence 8777765421 1000 2223456677777777776654 3344444 67777777777765543 22 233566
Q ss_pred eEEEcccCCc----eeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCc-hhhhCCCCCCEEE
Q 037604 172 TRLYLGCSAI----EEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFP-EILEKMEHLKCIN 246 (540)
Q Consensus 172 ~~L~L~~~~l----~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ 246 (540)
++|+++.... ...+..+..+++|+.|+++++ ....+|..+..+++|++|++++|.+..... ..+..+++|++|+
T Consensus 246 ~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp CEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred HhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 7777753221 133345667778888888774 345566666777888888888877443322 3457788888888
Q ss_pred cCCCCCc--ccCcccCCCCCCCeEccCC----------CcCCCc--CCCCCCCCCCCcEEEccCCCCCCC-CccccC-CC
Q 037604 247 LDRTAIT--ELPSSFENLTGLKGLSVSD----------CSKLDK--LPDNIGNLESLHHMSAFGSAISQL-PSSVAD-SN 310 (540)
Q Consensus 247 l~~~~l~--~l~~~~~~l~~L~~L~l~~----------~~~~~~--l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~-l~ 310 (540)
++ +.+. .++.....+++|++|++++ |..... ++.....+++|++|+++.+.+++. +..+.. ++
T Consensus 325 L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 325 TR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403 (592)
T ss_dssp EE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC
T ss_pred cc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC
Confidence 87 3333 3333345677788888874 433321 111123467888888877776642 233333 67
Q ss_pred CccEEEccC----CCCCCc-----ccccccCCCCCcEEeccCCC--CCC-CChhh-cCCCCCcEEEecCCCCc--ccchh
Q 037604 311 VLGILDFSR----CKGLES-----FPRSLLGLSSLVALHIRNFA--VME-IPQEI-ARLSSLIDLHIGGNNFQ--SLPAS 375 (540)
Q Consensus 311 ~L~~L~l~~----~~~~~~-----~~~~l~~~~~L~~L~l~~~~--~~~-~~~~~-~~l~~L~~L~l~~~~l~--~lp~~ 375 (540)
+|++|++++ +.+.+. ++..+.++++|++|++++|. +++ .+..+ ..+++|+.|++++|+++ .++..
T Consensus 404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 483 (592)
T 3ogk_B 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483 (592)
T ss_dssp SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH
T ss_pred CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH
Confidence 788888863 233321 22335567888888886544 333 22223 34778888888888876 34555
Q ss_pred ccCCCCCCEEEecCCCCCCc-CC---CCCCCccEEEecCCCCCCc----CCCCCCCccEEeecC
Q 037604 376 IKQLSQLSSLELNDCKMLQS-LP---ELPLCLKYLHLRDCKMLQS----LPALPLCLESLDLRD 431 (540)
Q Consensus 376 l~~l~~L~~L~l~~~~~~~~-~~---~~~~~L~~L~l~~~~~l~~----~~~~~~~L~~L~l~~ 431 (540)
+..+++|++|++++|++... ++ ...++|++|++++|+.... +...++.+....+..
T Consensus 484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 67778888888888874322 22 2347788888888874433 222334444444444
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=214.22 Aligned_cols=268 Identities=16% Similarity=0.168 Sum_probs=171.1
Q ss_pred CcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCc
Q 037604 73 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPV 151 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~ 151 (540)
.....+++++.++.+|..+ .++|++|++++|.++.+ .+..+.++++|++|++++|.+.+..+..+ .+++|+
T Consensus 32 ~~~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYI-------SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp TTSEEECCSTTCSSCCTTC-CTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCeEeeCCCCCcccccccc-cccCcEEECCCCcCccc-------CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 4456888899999998865 35899999999998864 34478899999999999988776666667 888899
Q ss_pred EEEccCCcCccccC---CCCCCeeEEEcccCCceeccc--cccCCCCCCEEEcccCccccc-cchhcCCCCCCcEEeccC
Q 037604 152 TIDFSYCVNLIEFP---QISGKITRLYLGCSAIEEVPS--SIECLTDLEVLDLMYCKRLKR-ISTRFCKLRSLVDLCLNG 225 (540)
Q Consensus 152 ~L~L~~~~~~~~~~---~~~~~l~~L~L~~~~l~~l~~--~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~ 225 (540)
+|++++|.+....+ ..+.++++|++++|.++.+|. .+..+++|++|++++|...+. .+..+..+++|++|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99888886653222 123344555555555555544 345555555555555532222 233455555555555555
Q ss_pred CcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCc-
Q 037604 226 CLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPS- 304 (540)
Q Consensus 226 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~- 304 (540)
|.+.+..|..+..+++|++|++++|.++.+|..+ +..+++|+.|++++|.+++++.
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-----------------------~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF-----------------------VDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHH-----------------------HHHTTTEEEEEEESCBCTTCCCC
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhh-----------------------hhhcccccEEECCCCcccccccc
Confidence 5554444555555555555555555554443321 1223444555555554444311
Q ss_pred ---cccCCCCccEEEccCCCCCC----cccccccCCCCCcEEeccCCCCCCCChhh-cCCCCCcEEEecCCCCcc
Q 037604 305 ---SVADSNVLGILDFSRCKGLE----SFPRSLLGLSSLVALHIRNFAVMEIPQEI-ARLSSLIDLHIGGNNFQS 371 (540)
Q Consensus 305 ---~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~ 371 (540)
.......++.++++++.+.+ .+|..+..+++|++|++++|.++.+|..+ ..+++|++|++++|.+..
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 11234556677777776554 35666788889999999999988888774 788999999999998763
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=3.3e-24 Score=205.22 Aligned_cols=218 Identities=23% Similarity=0.287 Sum_probs=181.3
Q ss_pred EEEccCCcCccccC-CCCCCeeEEEcccCCceecc-ccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCc-C
Q 037604 152 TIDFSYCVNLIEFP-QISGKITRLYLGCSAIEEVP-SSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCL-N 228 (540)
Q Consensus 152 ~L~L~~~~~~~~~~-~~~~~l~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~ 228 (540)
.++.+++.+. .+| ....++++|+++++.++.++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|. .
T Consensus 15 ~~~c~~~~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp EEECCSSCCS-SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EEEcCcCCcc-cCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 4444443332 223 34456677777777777766 458889999999999998777778889999999999999987 4
Q ss_pred CCcCchhhhCCCCCCEEEcCCCCCccc-CcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCc-cc
Q 037604 229 LERFPEILEKMEHLKCINLDRTAITEL-PSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPS-SV 306 (540)
Q Consensus 229 ~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~ 306 (540)
....+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++++. .+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence 444477889999999999999999876 4568889999999999998887666678899999999999999998865 48
Q ss_pred cCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCCh-hhcCCCCCcEEEecCCCCc
Q 037604 307 ADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQ-EIARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 307 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~ 370 (540)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+++. .+..+++|+.|++++|.+.
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 889999999999999988888899999999999999999999765 4889999999999999876
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.4e-25 Score=218.01 Aligned_cols=235 Identities=14% Similarity=0.065 Sum_probs=114.9
Q ss_pred CCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccccCCCCCCe
Q 037604 93 PKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIEFPQISGKI 171 (540)
Q Consensus 93 ~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l 171 (540)
+++|++|++++|.++.+ .|..+..+++|++|++++|.+.+..+ + .+++|++|++++|.+.+.. ...++
T Consensus 33 ~~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~--~~~~L 101 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQI-------SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--VGPSI 101 (317)
T ss_dssp GGGCSEEECTTSCCCCC-------CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE--ECTTC
T ss_pred CCCCCEEECcCCccCcC-------CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc--CCCCc
Confidence 34555555555555432 33445555555555555554443332 3 5555555555555432211 11344
Q ss_pred eEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhh-hCCCCCCEEEcCCC
Q 037604 172 TRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEIL-EKMEHLKCINLDRT 250 (540)
Q Consensus 172 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~ 250 (540)
++|++++|.++.++.. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 102 ~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 4444444444444322 24556666666665554444445555666666666655554444433 34556666666666
Q ss_pred CCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccc
Q 037604 251 AITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSL 330 (540)
Q Consensus 251 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l 330 (540)
.++.++. ...+++|++|++++ |.++++|..+..+++|++|++++|.+. .+|..+
T Consensus 180 ~l~~~~~-~~~l~~L~~L~Ls~------------------------N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 180 FIYDVKG-QVVFAKLKTLDLSS------------------------NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp CCCEEEC-CCCCTTCCEEECCS------------------------SCCCEECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred cCccccc-ccccccCCEEECCC------------------------CcCCcchhhhcccCcccEEECcCCccc-chhhHh
Confidence 5554432 22344455555544 444444444444444444444444433 234444
Q ss_pred cCCCCCcEEeccCCCCC-C-CChhhcCCCCCcEEEecC
Q 037604 331 LGLSSLVALHIRNFAVM-E-IPQEIARLSSLIDLHIGG 366 (540)
Q Consensus 331 ~~~~~L~~L~l~~~~~~-~-~~~~~~~l~~L~~L~l~~ 366 (540)
..+++|+.|++++|.+. + ++.++..+++|+.+++.+
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 44555555555555554 1 444455555555555543
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.5e-25 Score=215.70 Aligned_cols=201 Identities=18% Similarity=0.185 Sum_probs=161.6
Q ss_pred CCCCCCEEEcccCccccccchhc--CCCCCCcEEeccCCcCCCcCchhhhCC-----CCCCEEEcCCCCCcccC-cccCC
Q 037604 190 CLTDLEVLDLMYCKRLKRISTRF--CKLRSLVDLCLNGCLNLERFPEILEKM-----EHLKCINLDRTAITELP-SSFEN 261 (540)
Q Consensus 190 ~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~l~~l~-~~~~~ 261 (540)
.+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+. |..++.+ ++|++|++++|.++.++ ..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 68899999999998888888765 8899999999999887766 7777666 89999999999998776 67888
Q ss_pred CCCCCeEccCCCcCCCc--CCCCC--CCCCCCcEEEccCCCCCCCC----ccccCCCCccEEEccCCCCCCccc-ccccC
Q 037604 262 LTGLKGLSVSDCSKLDK--LPDNI--GNLESLHHMSAFGSAISQLP----SSVADSNVLGILDFSRCKGLESFP-RSLLG 332 (540)
Q Consensus 262 l~~L~~L~l~~~~~~~~--l~~~~--~~l~~L~~L~l~~~~l~~l~----~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~ 332 (540)
+++|++|++++|.+.+. .+..+ ..+++|++|++++|.++.++ ..+..+++|++|++++|.+.+..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 99999999999887654 22233 78889999999999888543 224567889999999998877664 34566
Q ss_pred CCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCCC
Q 037604 333 LSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQ 394 (540)
Q Consensus 333 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 394 (540)
+++|++|++++|.++.+|..+. ++|++|++++|+++.+|. +..+++|++|++++|++.+
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 7889999999998888887766 788999999998888876 7888888888888887543
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=4e-26 Score=241.96 Aligned_cols=393 Identities=13% Similarity=0.072 Sum_probs=209.0
Q ss_pred cCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCC------------ccccCcEEEeecCCCCCCC
Q 037604 20 LDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLD------------YLPEKLRYLHWDTYPLRIL 87 (540)
Q Consensus 20 ~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~~~L~~L~l~~~~l~~l 87 (540)
..+..+..+++|+.|+++++..-. ..+.+|..+. .+ ++|++|++++|.++..
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~---------------~~~~~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~i~~~ 127 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAA---------------MFNLIPENWGGYVTPWVTEISNNL-RQLKSVHFRRMIVSDL 127 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGG---------------GGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHH
T ss_pred ChHHHHHhCCCCeEEEecCCcchh---------------hcccccccccccchHHHHHHHhhC-CCCCeEEeeccEecHH
Confidence 345567889999999998764210 0011222221 45 4788888888866422
Q ss_pred C-CCC-C-CC-CceEeecCCcc-hhhhhccccCcCCCcccCCCCCCEEecCCCCCCcc----cCCCC-ccCCCcEEEccC
Q 037604 88 P-SNF-K-PK-NLVELNLRFSK-VEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRS----FPSNL-HFVCPVTIDFSY 157 (540)
Q Consensus 88 ~-~~~-~-~~-~L~~L~Ls~n~-i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~----~~~~~-~l~~L~~L~L~~ 157 (540)
. ..+ . ++ +|++|++++|. +... + ++....++++|++|++++|.+.+. ++... .+++|++|++++
T Consensus 128 ~~~~l~~~~~~~L~~L~L~~~~~~~~~--~----l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 201 (592)
T 3ogk_B 128 DLDRLAKARADDLETLKLDKCSGFTTD--G----LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM 201 (592)
T ss_dssp HHHHHHHHHGGGCCEEEEESCEEEEHH--H----HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTT
T ss_pred HHHHHHHhccccCcEEECcCCCCcCHH--H----HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeec
Confidence 1 111 1 23 38888888775 2210 0 223344678888888888765433 22233 677888888887
Q ss_pred CcCcc----ccC---CCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccc---cccchhcCCCCCCcEEeccCCc
Q 037604 158 CVNLI----EFP---QISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRL---KRISTRFCKLRSLVDLCLNGCL 227 (540)
Q Consensus 158 ~~~~~----~~~---~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~ 227 (540)
|.... .++ ....+|+.|+++.+.+..++..+..+++|+.|+++.+... ...+..+..+++|+.|+++++
T Consensus 202 n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 280 (592)
T 3ogk_B 202 TEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM- 280 (592)
T ss_dssp CCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-
T ss_pred cCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-
Confidence 76541 111 1235566666666666666666666666666666642221 122233555666666666653
Q ss_pred CCCcCchhhhCCCCCCEEEcCCCCCc--ccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccC---------
Q 037604 228 NLERFPEILEKMEHLKCINLDRTAIT--ELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFG--------- 296 (540)
Q Consensus 228 ~~~~~~~~l~~l~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~--------- 296 (540)
....+|..+..+++|++|++++|.++ .++..+..+++|+.|++.++.....++.....+++|++|++++
T Consensus 281 ~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 281 GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 33445555566666677777666654 2222345666666666663221122222223456666666662
Q ss_pred --CCCCC--CCccccCCCCccEEEccCCCCCCcccccccC-CCCCcEEecc----CCCCCCCC------hhhcCCCCCcE
Q 037604 297 --SAISQ--LPSSVADSNVLGILDFSRCKGLESFPRSLLG-LSSLVALHIR----NFAVMEIP------QEIARLSSLID 361 (540)
Q Consensus 297 --~~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~~~------~~~~~l~~L~~ 361 (540)
+.++. ++.....+++|++|++..+.+.+..+..++. +++|++|+++ .+.+++.| ..+..+++|+.
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 23332 1222334566666666555555544444443 6666666664 33444322 22445666666
Q ss_pred EEecCCC--Cc-ccchhc-cCCCCCCEEEecCCCCCC-cCC---CCCCCccEEEecCCCCCCc-CC---CCCCCccEEee
Q 037604 362 LHIGGNN--FQ-SLPASI-KQLSQLSSLELNDCKMLQ-SLP---ELPLCLKYLHLRDCKMLQS-LP---ALPLCLESLDL 429 (540)
Q Consensus 362 L~l~~~~--l~-~lp~~l-~~l~~L~~L~l~~~~~~~-~~~---~~~~~L~~L~l~~~~~l~~-~~---~~~~~L~~L~l 429 (540)
|+++.|. ++ ..+..+ ..+++|++|++++|.+.. .++ ...++|++|++++|+.... ++ ..+.+|++|++
T Consensus 441 L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp EEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEE
T ss_pred EEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeEC
Confidence 6665433 33 111122 345666666666665433 111 2335666666666663211 11 12345666666
Q ss_pred cCCCCC
Q 037604 430 RDCNML 435 (540)
Q Consensus 430 ~~~~~l 435 (540)
++|+..
T Consensus 521 s~n~it 526 (592)
T 3ogk_B 521 QGYRAS 526 (592)
T ss_dssp ESCBCC
T ss_pred cCCcCC
Confidence 666633
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=4.3e-24 Score=207.54 Aligned_cols=259 Identities=16% Similarity=0.079 Sum_probs=197.7
Q ss_pred CceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccccCCCCCCeeE
Q 037604 95 NLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIEFPQISGKITR 173 (540)
Q Consensus 95 ~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 173 (540)
.++..+++.+.+... ++..+..+++|++|++++|.+.+..|..+ .+++|++|++++|.+.+
T Consensus 11 ~l~i~~ls~~~l~~~-------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----------- 72 (317)
T 3o53_A 11 RYKIEKVTDSSLKQA-------LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE----------- 72 (317)
T ss_dssp EEEEESCCTTTHHHH-------HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-----------
T ss_pred ceeEeeccccchhhh-------HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-----------
Confidence 466677888877764 33445677899999999988776666666 88888888888876532
Q ss_pred EEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCc
Q 037604 174 LYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAIT 253 (540)
Q Consensus 174 L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 253 (540)
++. +..+++|++|++++|.+.+ ++ ..++|++|++++|.+.+..+. .+++|++|++++|.++
T Consensus 73 ----------~~~-~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 73 ----------TLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT 133 (317)
T ss_dssp ----------EEE-ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC
T ss_pred ----------chh-hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC
Confidence 222 5667777777777776443 22 246777777777766544332 3567888888888887
Q ss_pred ccCc-ccCCCCCCCeEccCCCcCCCcCCCCC-CCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCccccccc
Q 037604 254 ELPS-SFENLTGLKGLSVSDCSKLDKLPDNI-GNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLL 331 (540)
Q Consensus 254 ~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 331 (540)
.++. .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++++.. ..+++|++|++++|.+.+ ++..+.
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~ 211 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQ 211 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCE-ECGGGG
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCc-chhhhc
Confidence 6644 56777888888888887776655555 3678899999999988877543 348999999999999775 455588
Q ss_pred CCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCc--ccchhccCCCCCCEEEecCCCC
Q 037604 332 GLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQ--SLPASIKQLSQLSSLELNDCKM 392 (540)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~ 392 (540)
.+++|++|++++|.+..+|..+..+++|+.|++++|.+. .+|.++..+++|+.++++++..
T Consensus 212 ~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchh
Confidence 999999999999999999999999999999999999987 7778889999999999986543
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=4.4e-22 Score=189.43 Aligned_cols=215 Identities=20% Similarity=0.211 Sum_probs=158.4
Q ss_pred cCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccC-
Q 037604 178 CSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELP- 256 (540)
Q Consensus 178 ~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~- 256 (540)
...+..+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.++.++
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 344555665443 46788888877766555556777788888888887666555566777888888888888877655
Q ss_pred cccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCC--CCccccCCCCccEEEccCCCCCCcccccccCCC
Q 037604 257 SSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQ--LPSSVADSNVLGILDFSRCKGLESFPRSLLGLS 334 (540)
Q Consensus 257 ~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 334 (540)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++. +|..+..+++|++|++++|.+.+..+..+..++
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 457778888888888877766655567788888888888888876 477788888888888888887766555565555
Q ss_pred CCc----EEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchh-ccCCCCCCEEEecCCCCCC
Q 037604 335 SLV----ALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPAS-IKQLSQLSSLELNDCKMLQ 394 (540)
Q Consensus 335 ~L~----~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~ 394 (540)
+|+ +|++++|.+..++.......+|+.|++++|+++.+|.. +..+++|++|++++|++..
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 555 78888888888766666666888888888888877754 4778888888888887554
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.8e-23 Score=214.88 Aligned_cols=211 Identities=14% Similarity=0.039 Sum_probs=107.3
Q ss_pred CcEEEeecCCCCCCCCC-CC-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCCccCCC
Q 037604 73 KLRYLHWDTYPLRILPS-NF-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNLHFVCP 150 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~~-~~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L 150 (540)
+|++|++++|.+..+++ .+ .+++|++|+|++|.++.. .| ++.+++|++|++++|.+.+ +| ..+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~--l~~l~~L~~L~Ls~N~l~~-l~---~~~-- 99 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-------LD--LESLSTLRTLDLNNNYVQE-LL---VGP-- 99 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-------EE--CTTCTTCCEEECCSSEEEE-EE---ECT--
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-------cc--cccCCCCCEEEecCCcCCC-CC---CCC--
Confidence 56666666666555543 22 455555555555555431 11 4555555555555543221 11 113
Q ss_pred cEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCC
Q 037604 151 VTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLE 230 (540)
Q Consensus 151 ~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 230 (540)
+++.|++++|.++.++. ..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+
T Consensus 100 -------------------~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 100 -------------------SIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp -------------------TCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred -------------------CcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 33444444444443332 234566666666666665555556666667777776666665
Q ss_pred cCchhhh-CCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCC
Q 037604 231 RFPEILE-KMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADS 309 (540)
Q Consensus 231 ~~~~~l~-~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l 309 (540)
..|..+. .+++|+.|++++|.++.+|. ...+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++++|..+..+
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l 236 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred cChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccC
Confidence 5555554 56666666666666665533 2235555555555544443 2223444445555555554444444444444
Q ss_pred CCccEEEccCCC
Q 037604 310 NVLGILDFSRCK 321 (540)
Q Consensus 310 ~~L~~L~l~~~~ 321 (540)
++|+.|++++|.
T Consensus 237 ~~L~~L~l~~N~ 248 (487)
T 3oja_A 237 QNLEHFDLRGNG 248 (487)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEcCCCC
Confidence 444444444443
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=4.3e-24 Score=207.06 Aligned_cols=237 Identities=21% Similarity=0.196 Sum_probs=133.0
Q ss_pred CCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCC-CcCchhhh-------CCCCCCEEEcCCCCCc-ccCccc--C
Q 037604 192 TDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNL-ERFPEILE-------KMEHLKCINLDRTAIT-ELPSSF--E 260 (540)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~l~-~l~~~~--~ 260 (540)
++|++|++++|.+ .+|..+... |++|++++|.+. ..++..+. .+++|++|++++|.++ .+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4455555555544 344333222 555555554441 22333333 4555666666665555 344443 5
Q ss_pred CCCCCCeEccCCCcCCCcCCCCCCCC-----CCCcEEEccCCCCCCCC-ccccCCCCccEEEccCCCCCCc--ccccc--
Q 037604 261 NLTGLKGLSVSDCSKLDKLPDNIGNL-----ESLHHMSAFGSAISQLP-SSVADSNVLGILDFSRCKGLES--FPRSL-- 330 (540)
Q Consensus 261 ~l~~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~~~l-- 330 (540)
.+++|++|++++|.+.+. |..+..+ ++|++|++++|.+++++ ..++.+++|++|++++|.+.+. ++..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 556666666666555544 4444443 66666666666666653 5566666666666666665543 22223
Q ss_pred cCCCCCcEEeccCCCCCCCC---h-hhcCCCCCcEEEecCCCCcccc--hhccCCCCCCEEEecCCCCCCcCCCCC-CCc
Q 037604 331 LGLSSLVALHIRNFAVMEIP---Q-EIARLSSLIDLHIGGNNFQSLP--ASIKQLSQLSSLELNDCKMLQSLPELP-LCL 403 (540)
Q Consensus 331 ~~~~~L~~L~l~~~~~~~~~---~-~~~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~L 403 (540)
..+++|++|++++|.+..++ . .+..+++|+.|++++|+++..+ ..+..+++|++|++++|.+. .+|..+ ++|
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L 276 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKL 276 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCc
Confidence 56677777777777766422 2 2345667777777777766533 23445677777777777654 555433 577
Q ss_pred cEEEecCCCCCCcCCC--CCCCccEEeecCCCCC
Q 037604 404 KYLHLRDCKMLQSLPA--LPLCLESLDLRDCNML 435 (540)
Q Consensus 404 ~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~~l 435 (540)
++|++++|+..+ +|. .+.+|++|++++|+..
T Consensus 277 ~~L~Ls~N~l~~-~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 277 SVLDLSYNRLDR-NPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEECCSSCCCS-CCCTTTSCEEEEEECTTCTTT
T ss_pred eEEECCCCCCCC-ChhHhhCCCCCEEeccCCCCC
Confidence 777777776433 343 2344778888877654
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=9.9e-25 Score=231.34 Aligned_cols=403 Identities=13% Similarity=0.076 Sum_probs=250.9
Q ss_pred cCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCCccccCcEEEeecCCCCCCCC-CCC--CCCCc
Q 037604 20 LDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLDYLPEKLRYLHWDTYPLRILP-SNF--KPKNL 96 (540)
Q Consensus 20 ~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l~-~~~--~~~~L 96 (540)
.+...+..+++|+.|+++++.... .+.- .....-......++.....+ ++|++|++++|.++... ..+ .+++|
T Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~--~~~l-~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~L 132 (594)
T 2p1m_B 57 SPATVIRRFPKVRSVELKGKPHFA--DFNL-VPDGWGGYVYPWIEAMSSSY-TWLEEIRLKRMVVTDDCLELIAKSFKNF 132 (594)
T ss_dssp CHHHHHHHCTTCCEEEEECSCGGG--GGTC-SCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHCTTC
T ss_pred CHHHHHhhCCCceEEeccCCCchh--hccc-ccccccchhhHHHHHHHHhC-CCCCeEEeeCcEEcHHHHHHHHHhCCCC
Confidence 345678899999999999875310 0000 00000000000000111234 48999999998764321 112 47899
Q ss_pred eEeecCCc-chhhhhccccCcCCCcccCCCCCCEEecCCCCCCcc----cCCCC-ccCCCcEEEccCCc--Ccc----cc
Q 037604 97 VELNLRFS-KVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRS----FPSNL-HFVCPVTIDFSYCV--NLI----EF 164 (540)
Q Consensus 97 ~~L~Ls~n-~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~----~~~~~-~l~~L~~L~L~~~~--~~~----~~ 164 (540)
++|++++| .++.. + ++..+.++++|++|++++|.+.+. ++... .+++|++|++++|. ... .+
T Consensus 133 ~~L~L~~~~~~~~~--~----l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 133 KVLVLSSCEGFSTD--G----LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp CEEEEESCEEEEHH--H----HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred cEEeCCCcCCCCHH--H----HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 99999988 44431 1 333445789999999998874432 33333 67799999999886 111 11
Q ss_pred CCCCCCeeEEEcccC-CceeccccccCCCCCCEEEcccCcc------ccccchhcCCCCCCcEE-eccCCcCCCcCchhh
Q 037604 165 PQISGKITRLYLGCS-AIEEVPSSIECLTDLEVLDLMYCKR------LKRISTRFCKLRSLVDL-CLNGCLNLERFPEIL 236 (540)
Q Consensus 165 ~~~~~~l~~L~L~~~-~l~~l~~~~~~l~~L~~L~l~~~~~------~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l 236 (540)
.....+|++|+++++ .++.++..+..+++|+.|+++.+.. ...++..+.++++|+.| .+.+. ..+.++..+
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~ 285 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVY 285 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGH
T ss_pred HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHH
Confidence 123478899999665 5667777788889999999766532 22344467788888888 44432 223455555
Q ss_pred hCCCCCCEEEcCCCCCcc--cCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccC---------CCCCCC--C
Q 037604 237 EKMEHLKCINLDRTAITE--LPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFG---------SAISQL--P 303 (540)
Q Consensus 237 ~~l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~---------~~l~~l--~ 303 (540)
..+++|++|++++|.++. ++..+..+++|+.|++.+|.....++.....+++|++|++.+ +.+++. .
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 678889999999888662 333356788999999988721111222223478889998844 233321 1
Q ss_pred ccccCCCCccEEEccCCCCCCccccccc-CCCCCcEEecc--C----CCCCCCC------hhhcCCCCCcEEEecCCCCc
Q 037604 304 SSVADSNVLGILDFSRCKGLESFPRSLL-GLSSLVALHIR--N----FAVMEIP------QEIARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 304 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~~~~~~------~~~~~l~~L~~L~l~~~~l~ 370 (540)
.....+++|+.|.+..+.+.+.....+. .+++|++|+++ + +.+++.| ..+..+++|+.|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 1123478888888877776655444444 57889999988 3 4555332 2256688999999977 554
Q ss_pred -ccchhcc-CCCCCCEEEecCCCCCCcCC----CCCCCccEEEecCCCCCCc----CCCCCCCccEEeecCCCC
Q 037604 371 -SLPASIK-QLSQLSSLELNDCKMLQSLP----ELPLCLKYLHLRDCKMLQS----LPALPLCLESLDLRDCNM 434 (540)
Q Consensus 371 -~lp~~l~-~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~----~~~~~~~L~~L~l~~~~~ 434 (540)
..+..+. .+++|+.|++++|.+..... ...++|++|++++|+.... +...+.+|+.|++++|+.
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 2223343 37889999999987643222 2358899999999987322 222345699999999976
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=9.2e-22 Score=202.13 Aligned_cols=211 Identities=14% Similarity=0.141 Sum_probs=135.5
Q ss_pred eEEEcccCCceecc-ccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCC
Q 037604 172 TRLYLGCSAIEEVP-SSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRT 250 (540)
Q Consensus 172 ~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 250 (540)
+.|++++|.++.++ ..+..+++|++|++++|.+.+..| +..+++|++|++++|.+.+ ++ ..++|+.|++++|
T Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L~~N 109 (487)
T 3oja_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAANN 109 (487)
T ss_dssp CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCSS
T ss_pred cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEEECcCC
Confidence 33333333344332 456667777777777776655444 6667777777777765433 22 2367777777777
Q ss_pred CCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC-Ccccc-CCCCccEEEccCCCCCCcccc
Q 037604 251 AITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL-PSSVA-DSNVLGILDFSRCKGLESFPR 328 (540)
Q Consensus 251 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~-~l~~L~~L~l~~~~~~~~~~~ 328 (540)
.++.++.. .+++|+.|++++|.+.+..|..++.+++|++|++++|.+++. |..+. .+++|+.|++++|.+.+..
T Consensus 110 ~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-- 185 (487)
T 3oja_A 110 NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-- 185 (487)
T ss_dssp CCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--
T ss_pred cCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--
Confidence 77655442 456677777777777666666666777777777777777664 44443 5677777777777765542
Q ss_pred cccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCC
Q 037604 329 SLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKML 393 (540)
Q Consensus 329 ~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 393 (540)
....+++|++|++++|.++++|+.+..+++|+.|++++|.++.+|..+..+++|+.|++++|++.
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 23346777777777777777666677777777777777777777766667777777777777655
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=9.9e-21 Score=180.08 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=54.1
Q ss_pred CCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCC-cCchhhhCCCCCCEEEcCCCCCcccCc-ccCCCCCCC--
Q 037604 191 LTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLE-RFPEILEKMEHLKCINLDRTAITELPS-SFENLTGLK-- 266 (540)
Q Consensus 191 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~-- 266 (540)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.++.++. .+..+++|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 3344444444333332222223334444444444433332 123444444444444444444443321 222222222
Q ss_pred --eEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCcc-ccCCCCccEEEccCCCCC
Q 037604 267 --GLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSS-VADSNVLGILDFSRCKGL 323 (540)
Q Consensus 267 --~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~ 323 (540)
.|++++|.+.+..+..+ ...+|++|++++|.++++|.. +..+++|+.|++++|.+.
T Consensus 179 ~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 44444444333222222 223455555555555555332 344555555555555543
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.9e-20 Score=178.90 Aligned_cols=174 Identities=21% Similarity=0.162 Sum_probs=92.5
Q ss_pred CCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccC
Q 037604 217 SLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFG 296 (540)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~ 296 (540)
++++|++++|.+.+..+..+..+++|++|++++|.++.++.. ..+++|+.|++++|.+. .+|..+..+++|++|++++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCC
Confidence 344444444333333333344444444444444444433322 34444444444444332 3344444445555555555
Q ss_pred CCCCCCC-ccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChh-hcCCCCCcEEEecCCCCcccch
Q 037604 297 SAISQLP-SSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQE-IARLSSLIDLHIGGNNFQSLPA 374 (540)
Q Consensus 297 ~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~lp~ 374 (540)
|.++.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++..+|.. +..+++|+.|++++|+++.+|.
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh
Confidence 5555543 3345555555555555555444444455666666666766666665543 3556777777777777777776
Q ss_pred hccCCCCCCEEEecCCCC
Q 037604 375 SIKQLSQLSSLELNDCKM 392 (540)
Q Consensus 375 ~l~~l~~L~~L~l~~~~~ 392 (540)
.+..+++|+.|++++|+.
T Consensus 190 ~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTCCCSEEECCSCCB
T ss_pred hhcccccCCeEEeCCCCc
Confidence 666666777777777764
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.86 E-value=6.6e-24 Score=225.02 Aligned_cols=366 Identities=12% Similarity=0.091 Sum_probs=244.7
Q ss_pred hhhccccCceeeeeccccccchhhhccchhhhhcccccccCCCCC-ccccCcEEEeecCC-CCCC--CCCCC-CCCCceE
Q 037604 24 TFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPNGLD-YLPEKLRYLHWDTY-PLRI--LPSNF-KPKNLVE 98 (540)
Q Consensus 24 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~L~~L~l~~~-~l~~--l~~~~-~~~~L~~ 98 (540)
.+..+++|++|++++|.++ ...+..+. .+ ++|++|++++| .++. ++... .+++|++
T Consensus 100 l~~~~~~L~~L~L~~~~~~------------------~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~ 160 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVT------------------DDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160 (594)
T ss_dssp HHHHCTTCCEEEEESCBCC------------------HHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCE
T ss_pred HHHhCCCCCeEEeeCcEEc------------------HHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCE
Confidence 3467899999999999875 22222332 35 48999999998 5543 44444 6889999
Q ss_pred eecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCC--CCc-ccCCCC-ccCCCcEEEccCCcCccccCC---CCCCe
Q 037604 99 LNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCK--SLR-SFPSNL-HFVCPVTIDFSYCVNLIEFPQ---ISGKI 171 (540)
Q Consensus 99 L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~--~~~-~~~~~~-~l~~L~~L~L~~~~~~~~~~~---~~~~l 171 (540)
|++++|.++.. +... ++.....+++|++|++++|. ... .++... .+++|++|++++|.....++. ...++
T Consensus 161 L~L~~~~i~~~--~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 237 (594)
T 2p1m_B 161 LDLRESDVDDV--SGHW-LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQL 237 (594)
T ss_dssp EECTTCEEECC--CGGG-GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTC
T ss_pred EeCcCCccCCc--chHH-HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcc
Confidence 99999987632 2111 34444578899999999886 221 122222 579999999999854443332 34567
Q ss_pred eEEEccc-------CCceeccccccCCCCCCEE-EcccCccccccchhcCCCCCCcEEeccCCcCCCc-CchhhhCCCCC
Q 037604 172 TRLYLGC-------SAIEEVPSSIECLTDLEVL-DLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLER-FPEILEKMEHL 242 (540)
Q Consensus 172 ~~L~L~~-------~~l~~l~~~~~~l~~L~~L-~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L 242 (540)
+.|+++. +.+..++..+.++++|+.| .+.+. ....++..+..+++|++|++++|.+.+. +...+..+++|
T Consensus 238 ~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L 316 (594)
T 2p1m_B 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316 (594)
T ss_dssp SEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTC
T ss_pred eEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCc
Confidence 8888543 3345666678889999999 44443 2344555455788999999999884433 23345688999
Q ss_pred CEEEcCCCCCc--ccCcccCCCCCCCeEccCCC--------cCCC-cCCCCC-CCCCCCcEEEccCCCCCCC-Cccc-cC
Q 037604 243 KCINLDRTAIT--ELPSSFENLTGLKGLSVSDC--------SKLD-KLPDNI-GNLESLHHMSAFGSAISQL-PSSV-AD 308 (540)
Q Consensus 243 ~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~--------~~~~-~l~~~~-~~l~~L~~L~l~~~~l~~l-~~~~-~~ 308 (540)
++|+++++ +. .++.....+++|+.|++.+| .... .....+ ..+++|+.|.+..+.++.. ...+ ..
T Consensus 317 ~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 317 QRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395 (594)
T ss_dssp CEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred CEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh
Confidence 99999987 43 23333345889999999543 2211 111111 2478999998888887753 2223 35
Q ss_pred CCCccEEEcc-----CCCCCCcc------cccccCCCCCcEEeccCCCCCC-CChhhcC-CCCCcEEEecCCCCcc--cc
Q 037604 309 SNVLGILDFS-----RCKGLESF------PRSLLGLSSLVALHIRNFAVME-IPQEIAR-LSSLIDLHIGGNNFQS--LP 373 (540)
Q Consensus 309 l~~L~~L~l~-----~~~~~~~~------~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~-l~~L~~L~l~~~~l~~--lp 373 (540)
+++|+.|+++ +|...+.. +..+..+++|++|++++ .+++ .+..+.. +++|+.|++++|.++. ++
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~ 474 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence 7899999999 34433322 22356788999999987 5554 3334444 8899999999999863 22
Q ss_pred hhccCCCCCCEEEecCCCCCCcCC----CCCCCccEEEecCCCCC
Q 037604 374 ASIKQLSQLSSLELNDCKMLQSLP----ELPLCLKYLHLRDCKML 414 (540)
Q Consensus 374 ~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~l 414 (540)
.....+++|++|++++|++..... ...++|++|++++|+..
T Consensus 475 ~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 223668999999999998743221 23489999999999873
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.9e-20 Score=178.90 Aligned_cols=199 Identities=17% Similarity=0.154 Sum_probs=146.7
Q ss_pred CCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEc
Q 037604 168 SGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINL 247 (540)
Q Consensus 168 ~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 247 (540)
+.+++.++++.+.++.+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+.+ ++. .+.+++|++|++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEEEC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCCEEEC
Confidence 3456777777777777776653 577888888877766666677778888888888776554 332 267778888888
Q ss_pred CCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCcc-ccCCCCccEEEccCCCCCCcc
Q 037604 248 DRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSS-VADSNVLGILDFSRCKGLESF 326 (540)
Q Consensus 248 ~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~ 326 (540)
++|.++.+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++.. +..+++|+.|++++|++.+..
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 8888887777777778888888888777766666677778888888888887777543 566778888888888766555
Q ss_pred cccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCc
Q 037604 327 PRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 327 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 370 (540)
+..+..+++|++|++++|.+..+|..+...++|+.+++++|.+.
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 55566777888888888888777777777778888888877754
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.2e-20 Score=175.86 Aligned_cols=195 Identities=21% Similarity=0.259 Sum_probs=99.8
Q ss_pred EEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCC
Q 037604 173 RLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAI 252 (540)
Q Consensus 173 ~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 252 (540)
.++++++.++.+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 20 ~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 34444444444444332 3455555555544333333444555555555555443332223334445555555555544
Q ss_pred cccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCC-ccccCCCCccEEEccCCCCCCccccccc
Q 037604 253 TELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLP-SSVADSNVLGILDFSRCKGLESFPRSLL 331 (540)
Q Consensus 253 ~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 331 (540)
+.+| +..+..+++|++|++++|.++.++ ..+..+++|++|++++|.+.+..+..+.
T Consensus 98 ~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 98 QALP-----------------------IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp CCCC-----------------------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcCC-----------------------HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 4443 233344444444444444444442 2234445555555555554443333455
Q ss_pred CCCCCcEEeccCCCCCCCCh-hhcCCCCCcEEEecCCCCcccchh-ccCCCCCCEEEecCCCC
Q 037604 332 GLSSLVALHIRNFAVMEIPQ-EIARLSSLIDLHIGGNNFQSLPAS-IKQLSQLSSLELNDCKM 392 (540)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~ 392 (540)
.+++|++|++++|.+..++. .+..+++|+.|++++|+++.+|.. +..+++|+.|++++|++
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 56666666666666666443 355666777777777776666543 56667777777777764
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=8.6e-21 Score=179.92 Aligned_cols=201 Identities=16% Similarity=0.117 Sum_probs=114.2
Q ss_pred cCcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCC
Q 037604 72 EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCP 150 (540)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L 150 (540)
.+|+.|++++|.+..++....+++|++|++++|.++. + ..+..+++|++|++++|.+.+..+..+ .+++|
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--------~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--------I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--------C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--------c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 3677777777777776665567777777777777663 2 356677777777777776665445555 67777
Q ss_pred cEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCC
Q 037604 151 VTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLE 230 (540)
Q Consensus 151 ~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 230 (540)
++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 112 ~~L~L~~n~l~~~~~--------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 112 KELVLVENQLQSLPD--------------------GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CEEECTTSCCCCCCT--------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CEEECCCCcCCccCH--------------------HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 777777765543222 123445555555555554443333334555555555555555444
Q ss_pred cCchhhhCCCCCCEEEcCCCCCcccCcc-cCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCC-CCccccC
Q 037604 231 RFPEILEKMEHLKCINLDRTAITELPSS-FENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQ-LPSSVAD 308 (540)
Q Consensus 231 ~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~ 308 (540)
..+..++.+++|++|++++|.++.++.. +..+++|+.|++++|.+.+. +++|+.+++..|.+++ +|.+++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 4444445555555555555555544432 45555556666555544322 3345555555555443 3444443
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.1e-20 Score=173.73 Aligned_cols=194 Identities=14% Similarity=0.125 Sum_probs=100.2
Q ss_pred CCCEEEcccCccccccchhcCCCCCCcEEeccCCc-CCCcCchhhhCCCCCCEEEcCC-CCCcccCc-ccCCCCCCCeEc
Q 037604 193 DLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCL-NLERFPEILEKMEHLKCINLDR-TAITELPS-SFENLTGLKGLS 269 (540)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~ 269 (540)
++++|++++|.+.+..+..|.++++|++|++++|. +.+..+..+..+++|++|++++ |.++.++. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34444444444333222234444444444444443 2221222344444444444444 44444432 244444555555
Q ss_pred cCCCcCCCcCCCCCCCCCCCc---EEEccCC-CCCCCCc-cccCCCCcc-EEEccCCCCCCcccccccCCCCCcEEeccC
Q 037604 270 VSDCSKLDKLPDNIGNLESLH---HMSAFGS-AISQLPS-SVADSNVLG-ILDFSRCKGLESFPRSLLGLSSLVALHIRN 343 (540)
Q Consensus 270 l~~~~~~~~l~~~~~~l~~L~---~L~l~~~-~l~~l~~-~~~~l~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (540)
+++|.+.+ +|. +..+++|+ +|++++| .++.++. .+..+++|+ +|++++|.+. .+|......++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 54444333 333 44444444 5555555 5555433 355556666 6666666554 3333222226677777777
Q ss_pred CC-CCCCC-hhhcCC-CCCcEEEecCCCCcccchhccCCCCCCEEEecCCC
Q 037604 344 FA-VMEIP-QEIARL-SSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCK 391 (540)
Q Consensus 344 ~~-~~~~~-~~~~~l-~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~ 391 (540)
|. +..++ ..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 74 66653 345667 7788888888887777754 57788888887764
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=2.6e-20 Score=176.58 Aligned_cols=178 Identities=16% Similarity=0.233 Sum_probs=107.8
Q ss_pred CCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEE
Q 037604 213 CKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHM 292 (540)
Q Consensus 213 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 292 (540)
..+++|+.|++++|.+.. + ..+..+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345556666666654332 2 23555666666666666666543 45666666666666666555545555666666666
Q ss_pred EccCCCCCCCCcc-ccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChh-hcCCCCCcEEEecCCCCc
Q 037604 293 SAFGSAISQLPSS-VADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQE-IARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 293 ~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~ 370 (540)
++++|.+++++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+++.. +..+++|+.|++++|+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 6666666665433 55666666666666665554444556666677777777766664433 456677777777777766
Q ss_pred ccchh-ccCCCCCCEEEecCCCCC
Q 037604 371 SLPAS-IKQLSQLSSLELNDCKML 393 (540)
Q Consensus 371 ~lp~~-l~~l~~L~~L~l~~~~~~ 393 (540)
.++.. +..+++|+.|++++|++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc
Confidence 55543 466667777777766544
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.5e-20 Score=173.27 Aligned_cols=204 Identities=16% Similarity=0.158 Sum_probs=153.7
Q ss_pred ccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCC-CcccCc-ccCCCCCCCeEccCC-CcCCCcCCC
Q 037604 205 LKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTA-ITELPS-SFENLTGLKGLSVSD-CSKLDKLPD 281 (540)
Q Consensus 205 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~L~l~~-~~~~~~l~~ 281 (540)
.+.+|. + ..++++|++++|.+.+..+..+..+++|++|++++|. ++.++. .+..+++|++|++++ |.+....+.
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 445555 3 2478899999887766556678888999999999986 887765 578888999999987 666655556
Q ss_pred CCCCCCCCcEEEccCCCCCCCCccccCCCCcc---EEEccCC-CCCCcccccccCCCCCc-EEeccCCCCCCCChhhcCC
Q 037604 282 NIGNLESLHHMSAFGSAISQLPSSVADSNVLG---ILDFSRC-KGLESFPRSLLGLSSLV-ALHIRNFAVMEIPQEIARL 356 (540)
Q Consensus 282 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~l 356 (540)
.+..+++|++|++++|.++++|. +..+++|+ +|++++| .+.+..+..+..+++|+ +|++++|.+..+|......
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 77888889999999998888876 77777777 8888888 65555555678888888 8888888888877655555
Q ss_pred CCCcEEEecCCC-Ccccch-hccCC-CCCCEEEecCCCCCCcCCCCCCCccEEEecCCC
Q 037604 357 SSLIDLHIGGNN-FQSLPA-SIKQL-SQLSSLELNDCKMLQSLPELPLCLKYLHLRDCK 412 (540)
Q Consensus 357 ~~L~~L~l~~~~-l~~lp~-~l~~l-~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~ 412 (540)
++|+.|++++|+ ++.+|. .+..+ ++|++|++++|++.+..+..+++|+.|+++++.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence 788888888884 887754 46777 888888888887653333446777777777664
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.3e-19 Score=168.83 Aligned_cols=176 Identities=20% Similarity=0.239 Sum_probs=114.0
Q ss_pred CCeeEEEcccCCceeccc-cccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEc
Q 037604 169 GKITRLYLGCSAIEEVPS-SIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINL 247 (540)
Q Consensus 169 ~~l~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 247 (540)
..+++|+++++.++.++. .+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 345666666666666654 5788899999999998766544455688899999999998877655667788888999999
Q ss_pred CCCCCcccCcc-cCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCc-cccCCCCccEEEccCCCCCCc
Q 037604 248 DRTAITELPSS-FENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPS-SVADSNVLGILDFSRCKGLES 325 (540)
Q Consensus 248 ~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~ 325 (540)
++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 88888866543 5667777777777766655444445666666666666666665533 244444455554444444332
Q ss_pred ccccccCCCCCcEEeccCC
Q 037604 326 FPRSLLGLSSLVALHIRNF 344 (540)
Q Consensus 326 ~~~~l~~~~~L~~L~l~~~ 344 (540)
.+..+..+++|+.|++++|
T Consensus 197 ~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTTTTTCTTCCEEECCSS
T ss_pred CHHHhccccCCCEEEecCC
Confidence 2223333444444444443
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=181.26 Aligned_cols=200 Identities=16% Similarity=0.146 Sum_probs=147.2
Q ss_pred CCCCCEEEcccCccccccchhc--CCCCCCcEEeccCCcCCCcCc----hhhhCCCCCCEEEcCCCCCcccC-cccCCCC
Q 037604 191 LTDLEVLDLMYCKRLKRISTRF--CKLRSLVDLCLNGCLNLERFP----EILEKMEHLKCINLDRTAITELP-SSFENLT 263 (540)
Q Consensus 191 l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~l~~l~-~~~~~l~ 263 (540)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+..++ ..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568888888888777777766 778888888888887766443 33456788888888888887655 4577888
Q ss_pred CCCeEccCCCcCCCc--C--CCCCCCCCCCcEEEccCCCCCCCCcc----ccCCCCccEEEccCCCCCCcccccccCC--
Q 037604 264 GLKGLSVSDCSKLDK--L--PDNIGNLESLHHMSAFGSAISQLPSS----VADSNVLGILDFSRCKGLESFPRSLLGL-- 333 (540)
Q Consensus 264 ~L~~L~l~~~~~~~~--l--~~~~~~l~~L~~L~l~~~~l~~l~~~----~~~l~~L~~L~l~~~~~~~~~~~~l~~~-- 333 (540)
+|++|++++|.+.+. + +..+..+++|++|++++|.++.++.. ++.+++|++|++++|.+.+..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 888888888876542 2 22346778888888888888765442 4567888888888888777666666555
Q ss_pred -CCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCC
Q 037604 334 -SSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKML 393 (540)
Q Consensus 334 -~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 393 (540)
++|++|++++|.++.+|..+. ++|+.|++++|+++.+|. +..+++|+.|++++|++.
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 588888888888887776654 688888888888877764 567778888888887654
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=8.7e-22 Score=196.92 Aligned_cols=191 Identities=16% Similarity=0.128 Sum_probs=99.9
Q ss_pred ccCCCCCCEEEcccCcccc----ccchhcCCCCCCcEEeccCCcCCCcCc----hhhhCC---------CCCCEEEcCCC
Q 037604 188 IECLTDLEVLDLMYCKRLK----RISTRFCKLRSLVDLCLNGCLNLERFP----EILEKM---------EHLKCINLDRT 250 (540)
Q Consensus 188 ~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~l---------~~L~~L~l~~~ 250 (540)
+..+++|++|++++|.+.. .++..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3556666666666666544 345555566666666666665432222 222222 56666666666
Q ss_pred CCc--ccC---cccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCC--
Q 037604 251 AIT--ELP---SSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGL-- 323 (540)
Q Consensus 251 ~l~--~l~---~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~-- 323 (540)
.++ .++ ..+..+++|++|++++|.+...-... -.+..+..+++|++|++++|.+.
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~------------------l~~~~l~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH------------------LLLEGLAYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH------------------HHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH------------------HHHHHhhcCCCccEEECcCCCCCcH
Confidence 554 222 23334445555555554433100000 01113344445555555555543
Q ss_pred --CcccccccCCCCCcEEeccCCCCCC-----CChhh--cCCCCCcEEEecCCCCcc-----cchhc-cCCCCCCEEEec
Q 037604 324 --ESFPRSLLGLSSLVALHIRNFAVME-----IPQEI--ARLSSLIDLHIGGNNFQS-----LPASI-KQLSQLSSLELN 388 (540)
Q Consensus 324 --~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~--~~l~~L~~L~l~~~~l~~-----lp~~l-~~l~~L~~L~l~ 388 (540)
..++..+..+++|++|++++|.+.+ ++..+ +.+++|+.|++++|.++. +|..+ ..+++|++|+++
T Consensus 232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 3344455556666666666666554 23444 236777777777777665 66655 456777777777
Q ss_pred CCCCCCcC
Q 037604 389 DCKMLQSL 396 (540)
Q Consensus 389 ~~~~~~~~ 396 (540)
+|++.+..
T Consensus 312 ~N~l~~~~ 319 (386)
T 2ca6_A 312 GNRFSEED 319 (386)
T ss_dssp TSBSCTTS
T ss_pred CCcCCcch
Confidence 77665443
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.9e-19 Score=173.81 Aligned_cols=190 Identities=18% Similarity=0.279 Sum_probs=112.9
Q ss_pred CCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEcc
Q 037604 191 LTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSV 270 (540)
Q Consensus 191 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l 270 (540)
+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++.++ .+..+++|+.|++
T Consensus 40 l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 444555555544332 222 24445555555555544332 222 555555555555555555543 3555555666666
Q ss_pred CCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCC
Q 037604 271 SDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIP 350 (540)
Q Consensus 271 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 350 (540)
++|.+.+ ++ .+..+++|++|++++|.+++++. +..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+++
T Consensus 115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcCh
Confidence 6555443 22 25556666666666666666544 55666677777777665543 22 667777777777777777765
Q ss_pred hhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCC
Q 037604 351 QEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKM 392 (540)
Q Consensus 351 ~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 392 (540)
. +..+++|++|++++|+++.++. +..+++|+.|++++|++
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred h-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence 4 6777778888888887777763 67777888888887764
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=9.7e-20 Score=175.80 Aligned_cols=188 Identities=22% Similarity=0.297 Sum_probs=85.2
Q ss_pred CCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEc
Q 037604 215 LRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSA 294 (540)
Q Consensus 215 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 294 (540)
+++|++|++++|.+.. ++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 4444555555443322 22 34444555555555555444443 4444555555555444332 22 3444445555555
Q ss_pred cCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccch
Q 037604 295 FGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPA 374 (540)
Q Consensus 295 ~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 374 (540)
++|.+++++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+++. +..+++|+.|++++|.++.++.
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh
Confidence 5555444432 4444555555555544433221 4444455555555554444433 4444555555555555444443
Q ss_pred hccCCCCCCEEEecCCCCCCcCC-CCCCCccEEEecCCC
Q 037604 375 SIKQLSQLSSLELNDCKMLQSLP-ELPLCLKYLHLRDCK 412 (540)
Q Consensus 375 ~l~~l~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~ 412 (540)
+..+++|++|++++|++.+..+ ...++|+.|++++|+
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred -hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 4444455555555544332221 122445555555444
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.2e-21 Score=192.03 Aligned_cols=218 Identities=15% Similarity=0.167 Sum_probs=126.3
Q ss_pred CCCEEecCCCCCCcccCCCC-cc--CCCcEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccC
Q 037604 126 YLSMLNFEGCKSLRSFPSNL-HF--VCPVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYC 202 (540)
Q Consensus 126 ~L~~L~L~~~~~~~~~~~~~-~l--~~L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~ 202 (540)
.++.++++++.+.. ..+ .+ ++++.+++++|.+ ...+..+..+++|++|++++|
T Consensus 48 ~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l---------------------~~~~~~~~~~~~L~~L~L~~~ 103 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFM---------------------DQPLAEHFSPFRVQHMDLSNS 103 (336)
T ss_dssp TSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEE---------------------CSCCCSCCCCBCCCEEECTTC
T ss_pred hheeeccccccCCH---HHHHhhhhccceEEEcCCccc---------------------cccchhhccCCCCCEEEccCC
Confidence 46777777765442 222 33 5666666666544 333333456677777777777
Q ss_pred ccccc-cchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCC-CCc--ccCcccCCCCCCCeEccCCC-cCCC
Q 037604 203 KRLKR-ISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRT-AIT--ELPSSFENLTGLKGLSVSDC-SKLD 277 (540)
Q Consensus 203 ~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~--~l~~~~~~l~~L~~L~l~~~-~~~~ 277 (540)
.+... ++..+..+++|++|++++|.+.+..+..++.+++|++|++++| .++ .++..+..+++|++|++++| .+.+
T Consensus 104 ~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 104 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 65544 6666777777777777777666566666777777777777777 555 35555666677777777776 4433
Q ss_pred c-CCCCCCCCC-CCcEEEccCCC--CC--CCCccccCCCCccEEEccCCC-CCCcccccccCCCCCcEEeccCCC-CCC-
Q 037604 278 K-LPDNIGNLE-SLHHMSAFGSA--IS--QLPSSVADSNVLGILDFSRCK-GLESFPRSLLGLSSLVALHIRNFA-VME- 348 (540)
Q Consensus 278 ~-l~~~~~~l~-~L~~L~l~~~~--l~--~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~- 348 (540)
. ++..+..++ +|++|++++|. ++ .++..+..+++|++|++++|. +.+..+..+..+++|++|++++|. +..
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 2 333445556 66666666663 32 234444555566666666665 334444455555555555555553 111
Q ss_pred CChhhcCCCCCcEEEecCC
Q 037604 349 IPQEIARLSSLIDLHIGGN 367 (540)
Q Consensus 349 ~~~~~~~l~~L~~L~l~~~ 367 (540)
....+..+++|+.|++++|
T Consensus 264 ~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 264 TLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGCTTCCEEECTTS
T ss_pred HHHHHhcCCCCCEEeccCc
Confidence 1113444555555555555
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=4.2e-19 Score=174.76 Aligned_cols=239 Identities=18% Similarity=0.194 Sum_probs=175.5
Q ss_pred cEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC--ccCCCc
Q 037604 74 LRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL--HFVCPV 151 (540)
Q Consensus 74 L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~--~l~~L~ 151 (540)
-++++.+++++++||..+ .+++++|+|++|+|+.+ -+.+|.++++|++|+|++|.+.+.+|... .+++++
T Consensus 11 ~~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i-------~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVI-------QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp TTEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEE-------CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CCEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCc-------CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 357888999999999876 46899999999999874 33468899999999999988777666533 555554
Q ss_pred EEEccCCcCccccCCCCCCeeEEEcccCCceecc-ccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCC
Q 037604 152 TIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVP-SSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLE 230 (540)
Q Consensus 152 ~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 230 (540)
++ +.+++|.++.++ ..+..+++|++|++++|.+....+..+....++..+++.++....
T Consensus 83 ~~--------------------l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 83 EI--------------------RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp EE--------------------EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred hh--------------------hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence 43 233445556553 557889999999999988766555556667788889988766555
Q ss_pred cCc-hhhhCC-CCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCC-CCCCCCCCcEEEccCCCCCCCCcccc
Q 037604 231 RFP-EILEKM-EHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPD-NIGNLESLHHMSAFGSAISQLPSSVA 307 (540)
Q Consensus 231 ~~~-~~l~~l-~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~l~~~~~ 307 (540)
.++ ..+..+ ..++.|++++|.++.++......++|+.+.+.+++..+.+|. .|..+++|++|++++|.++.+|..
T Consensus 143 ~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~-- 220 (350)
T 4ay9_X 143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY-- 220 (350)
T ss_dssp EECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--
T ss_pred cccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--
Confidence 554 345554 468899999999999988877788899999988777777775 568899999999999999888753
Q ss_pred CCCCccEEEccCCCCCCcccccccCCCCCcEEeccC
Q 037604 308 DSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRN 343 (540)
Q Consensus 308 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (540)
.+.+|+.|.+.++.....+|. +..+++|+.+++.+
T Consensus 221 ~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 345666666666655555553 55555666655543
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=1e-20 Score=189.15 Aligned_cols=236 Identities=13% Similarity=0.102 Sum_probs=163.9
Q ss_pred eeccccccCCCCCCEEEcccCcccccc----chhcCCCCCCcEEeccCCcC---CCcCchhh-------hCCCCCCEEEc
Q 037604 182 EEVPSSIECLTDLEVLDLMYCKRLKRI----STRFCKLRSLVDLCLNGCLN---LERFPEIL-------EKMEHLKCINL 247 (540)
Q Consensus 182 ~~l~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~---~~~~~~~l-------~~l~~L~~L~l 247 (540)
..++..+..+++|++|++++|.+.... +..+..+++|++|++++|.. .+.+|..+ ..+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 344455556666666666666554432 22355666677776666432 22333333 56677777777
Q ss_pred CCCCCcc-----cCcccCCCCCCCeEccCCCcCCCcCC----CCCCCC---------CCCcEEEccCCCCC--CCC---c
Q 037604 248 DRTAITE-----LPSSFENLTGLKGLSVSDCSKLDKLP----DNIGNL---------ESLHHMSAFGSAIS--QLP---S 304 (540)
Q Consensus 248 ~~~~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~l~----~~~~~l---------~~L~~L~l~~~~l~--~l~---~ 304 (540)
++|.++. +|..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|.++ .++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 7777664 55556667777777777776542222 222223 78888888888886 233 3
Q ss_pred cccCCCCccEEEccCCCCCC-----cccccccCCCCCcEEeccCCCCC-----CCChhhcCCCCCcEEEecCCCCcc---
Q 037604 305 SVADSNVLGILDFSRCKGLE-----SFPRSLLGLSSLVALHIRNFAVM-----EIPQEIARLSSLIDLHIGGNNFQS--- 371 (540)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~--- 371 (540)
.+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ .++..+..+++|+.|++++|.++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 56678899999999998763 23437888999999999999995 377888999999999999999874
Q ss_pred --cchhcc--CCCCCCEEEecCCCCCC----cCCCC----CCCccEEEecCCCCCCcC
Q 037604 372 --LPASIK--QLSQLSSLELNDCKMLQ----SLPEL----PLCLKYLHLRDCKMLQSL 417 (540)
Q Consensus 372 --lp~~l~--~l~~L~~L~l~~~~~~~----~~~~~----~~~L~~L~l~~~~~l~~~ 417 (540)
++..+. .+++|++|++++|.+.. .+|.. +++|++|++++|+.....
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 466664 48999999999998766 36642 489999999999866543
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=6.6e-21 Score=186.87 Aligned_cols=202 Identities=13% Similarity=0.151 Sum_probs=122.8
Q ss_pred ccCC--CCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCc-CchhhhCCCCCCEEEcCCCCCc-ccCcccCCCC
Q 037604 188 IECL--TDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLER-FPEILEKMEHLKCINLDRTAIT-ELPSSFENLT 263 (540)
Q Consensus 188 ~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~l~ 263 (540)
+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.++ ..+..+..++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 4444 6788888888766555444 55677888888888776544 6666777778888888777766 4555566677
Q ss_pred CCCeEccCCCc-CCC-cCCCCCCCCCCCcEEEccCC-CCCC--CCccccCCC-CccEEEccCCC--CC-CcccccccCCC
Q 037604 264 GLKGLSVSDCS-KLD-KLPDNIGNLESLHHMSAFGS-AISQ--LPSSVADSN-VLGILDFSRCK--GL-ESFPRSLLGLS 334 (540)
Q Consensus 264 ~L~~L~l~~~~-~~~-~l~~~~~~l~~L~~L~l~~~-~l~~--l~~~~~~l~-~L~~L~l~~~~--~~-~~~~~~l~~~~ 334 (540)
+|++|++++|. +.+ .++..+..+++|++|++++| .+++ ++..+..++ +|++|++++|. +. +.++..+..++
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 77777777773 332 24444556666777777766 6653 344455566 66666666662 32 33444445566
Q ss_pred CCcEEeccCCC-CCC-CChhhcCCCCCcEEEecCCC-Cc-ccchhccCCCCCCEEEecCC
Q 037604 335 SLVALHIRNFA-VME-IPQEIARLSSLIDLHIGGNN-FQ-SLPASIKQLSQLSSLELNDC 390 (540)
Q Consensus 335 ~L~~L~l~~~~-~~~-~~~~~~~l~~L~~L~l~~~~-l~-~lp~~l~~l~~L~~L~l~~~ 390 (540)
+|++|++++|. +++ .+..+..+++|++|++++|. +. .....+..+++|++|++++|
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66666666665 332 44455556666666666664 22 11113455566666666655
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=174.81 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=103.8
Q ss_pred CCCEEEcccCccccc----cchhcCCCCCCcEEeccCCcCCCcCchhh--hCCCCCCEEEcCCCCCccc-C----cccCC
Q 037604 193 DLEVLDLMYCKRLKR----ISTRFCKLRSLVDLCLNGCLNLERFPEIL--EKMEHLKCINLDRTAITEL-P----SSFEN 261 (540)
Q Consensus 193 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~~l-~----~~~~~ 261 (540)
.++.+.+.++.+... +.. +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.++.. + ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 466677766554321 111 2224557777777777666666655 6677777777777776632 1 12334
Q ss_pred CCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCC---C--CccccCCCCccEEEccCCCCCCcccc----cccC
Q 037604 262 LTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQ---L--PSSVADSNVLGILDFSRCKGLESFPR----SLLG 332 (540)
Q Consensus 262 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~---l--~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~ 332 (540)
+++|++|++++|.+.+..+..++.+++|++|++++|.+.+ + +..++.+++|++|++++|.+.. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 5666666666666655555556666666666666665442 1 1122444555555555555431 111 1234
Q ss_pred CCCCcEEeccCCCCCCC-ChhhcCC---CCCcEEEecCCCCcccchhccCCCCCCEEEecCCCCC
Q 037604 333 LSSLVALHIRNFAVMEI-PQEIARL---SSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKML 393 (540)
Q Consensus 333 ~~~L~~L~l~~~~~~~~-~~~~~~l---~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 393 (540)
+++|++|++++|.+.+. |..+..+ ++|++|++++|+++.+|..+. ++|++|++++|++.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCC
Confidence 45555555555555552 4444333 355555555555555544332 45555555555433
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=4.8e-18 Score=158.94 Aligned_cols=173 Identities=21% Similarity=0.283 Sum_probs=89.7
Q ss_pred EEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCC
Q 037604 173 RLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAI 252 (540)
Q Consensus 173 ~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 252 (540)
+++++++.++.+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 18 ~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp EEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 44444455555555443 4666666666665555555566666666666666655554445555556666666666655
Q ss_pred cccCc-ccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCccccccc
Q 037604 253 TELPS-SFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLL 331 (540)
Q Consensus 253 ~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 331 (540)
+.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++++ +..+.
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------------~~~~~ 152 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-----------------------AGAFD 152 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------TTTTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-----------------------HHHcC
Confidence 54443 2344555555555554444333333444444444444444444443 33344
Q ss_pred CCCCCcEEeccCCCCCCCCh-hhcCCCCCcEEEecCCCCc
Q 037604 332 GLSSLVALHIRNFAVMEIPQ-EIARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~ 370 (540)
.+++|++|++++|.+..++. .+..+++|+.|++++|.++
T Consensus 153 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 44555555555555554332 3445555555555555543
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.78 E-value=8.6e-21 Score=187.80 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=33.1
Q ss_pred CCCcEEeccCCCCCCCC-----hhhcCCCCCcEEEecCCCCc--------ccchhccCCCCCCEEEecCCCCCCc
Q 037604 334 SSLVALHIRNFAVMEIP-----QEIARLSSLIDLHIGGNNFQ--------SLPASIKQLSQLSSLELNDCKMLQS 395 (540)
Q Consensus 334 ~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~l~--------~lp~~l~~l~~L~~L~l~~~~~~~~ 395 (540)
++|++|++++|.+.+.+ ..+..+++|+.|++++|.+. .++..+..+++|++|++++|++...
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 35555555555555422 12344566666666666532 2233445566666677776664433
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=4.3e-18 Score=167.48 Aligned_cols=234 Identities=19% Similarity=0.232 Sum_probs=144.0
Q ss_pred EEEccCCcCccccCC-CCCCeeEEEcccCCceeccc-cccCCCCCCEEEcccCccccccch-hcCCCCCCcEEe-ccCCc
Q 037604 152 TIDFSYCVNLIEFPQ-ISGKITRLYLGCSAIEEVPS-SIECLTDLEVLDLMYCKRLKRIST-RFCKLRSLVDLC-LNGCL 227 (540)
Q Consensus 152 ~L~L~~~~~~~~~~~-~~~~l~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~-l~~~~ 227 (540)
.++.+++.+ ..+|. ...++++|++++|.++.+|. .+.++++|++|++++|.+.+.++. .|.++++++++. +.+|.
T Consensus 13 ~v~C~~~~L-t~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKV-TEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTC-CSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCC-CccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 444444333 23443 33466777777777777775 467788888888888877666653 467777776544 44445
Q ss_pred CCCcCchhhhCCCCCCEEEcCCCCCcccCcc-cCCCCCCCeEccCCCcCCCcCCC-CCCCC-CCCcEEEccCCCCCCCCc
Q 037604 228 NLERFPEILEKMEHLKCINLDRTAITELPSS-FENLTGLKGLSVSDCSKLDKLPD-NIGNL-ESLHHMSAFGSAISQLPS 304 (540)
Q Consensus 228 ~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~l-~~L~~L~l~~~~l~~l~~ 304 (540)
+....+..+..+++|++|++++|.++.+|.. +....++..+++.++.....++. .+..+ ..++.|++++|.++.++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh
Confidence 5444466677888888888888888766543 34455666777766544444443 34444 356777777777777766
Q ss_pred cccCCCCccEEEccCCCCCCcccc-cccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCC-CcccchhccCCCCC
Q 037604 305 SVADSNVLGILDFSRCKGLESFPR-SLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNN-FQSLPASIKQLSQL 382 (540)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~lp~~l~~l~~L 382 (540)
......+|+.+++.++...+.+|. .+.++++|++|++++|+++.+|.. .+.+|+.|.+.++. ++.+| .+..+++|
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L 248 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVAL 248 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSC
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcCh
Confidence 555556677777765544454543 456666666666666666666542 34455555554443 55555 35566666
Q ss_pred CEEEecC
Q 037604 383 SSLELND 389 (540)
Q Consensus 383 ~~L~l~~ 389 (540)
+.+++.+
T Consensus 249 ~~l~l~~ 255 (350)
T 4ay9_X 249 MEASLTY 255 (350)
T ss_dssp CEEECSC
T ss_pred hhCcCCC
Confidence 6666654
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=1e-17 Score=156.69 Aligned_cols=176 Identities=17% Similarity=0.160 Sum_probs=108.4
Q ss_pred cCcEEEeecCCCCCCCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCC
Q 037604 72 EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCP 150 (540)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L 150 (540)
...++++++++.++.+|..+. +++++|++++|.++.+ .+..|.++++|++|++++|.+.+..+..+ .+++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 85 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATL-------SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCC-------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCcc-------CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC
Confidence 367789999999999988764 6899999999998864 55678889999999999887766555555 66667
Q ss_pred cEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCC
Q 037604 151 VTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLE 230 (540)
Q Consensus 151 ~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 230 (540)
++|++++|.+.... +..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+
T Consensus 86 ~~L~L~~n~l~~~~--------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 86 GTLGLANNQLASLP--------------------LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CEEECTTSCCCCCC--------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CEEECCCCcccccC--------------------hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 76666665443211 1224455566666666655443333334555555555555554443
Q ss_pred cCchhhhCCCCCCEEEcCCCCCcccCc-ccCCCCCCCeEccCCCcC
Q 037604 231 RFPEILEKMEHLKCINLDRTAITELPS-SFENLTGLKGLSVSDCSK 275 (540)
Q Consensus 231 ~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~ 275 (540)
..+..+..+++|++|++++|.++.++. .+..+++|+.|++++|++
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 333345555555555555555554433 244444555555554443
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=1.3e-19 Score=179.26 Aligned_cols=217 Identities=13% Similarity=0.082 Sum_probs=109.9
Q ss_pred EcccCCcee-ccccccCCCCCCEEEcccCccccccc----hhcCCCC-CCcEEeccCCcCCCcCchhhhCC-----CCCC
Q 037604 175 YLGCSAIEE-VPSSIECLTDLEVLDLMYCKRLKRIS----TRFCKLR-SLVDLCLNGCLNLERFPEILEKM-----EHLK 243 (540)
Q Consensus 175 ~L~~~~l~~-l~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L~ 243 (540)
.++.+.++. +|..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+.+..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 344444442 23333334447777777766544433 4455566 67777777766555544444443 6677
Q ss_pred EEEcCCCCCcccCcc-----cCCC-CCCCeEccCCCcCCCcCCCC----CCC-CCCCcEEEccCCCCCCC-----Ccccc
Q 037604 244 CINLDRTAITELPSS-----FENL-TGLKGLSVSDCSKLDKLPDN----IGN-LESLHHMSAFGSAISQL-----PSSVA 307 (540)
Q Consensus 244 ~L~l~~~~l~~l~~~-----~~~l-~~L~~L~l~~~~~~~~l~~~----~~~-l~~L~~L~l~~~~l~~l-----~~~~~ 307 (540)
+|++++|.++..+.. +..+ ++|++|++++|.+.+..+.. +.. .++|++|++++|.+++. +..+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 777776666643321 3333 56666666666554332222 222 24566666666655532 22233
Q ss_pred CCC-CccEEEccCCCCCCccccc----ccCC-CCCcEEeccCCCCCC-----CChhhcC-CCCCcEEEecCCCCcccc--
Q 037604 308 DSN-VLGILDFSRCKGLESFPRS----LLGL-SSLVALHIRNFAVME-----IPQEIAR-LSSLIDLHIGGNNFQSLP-- 373 (540)
Q Consensus 308 ~l~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~-----~~~~~~~-l~~L~~L~l~~~~l~~lp-- 373 (540)
..+ +|++|++++|.+.+..+.. +..+ ++|++|++++|.+.+ ++..+.. .++|++|++++|.++..+
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 333 5566666665544433322 2233 356666666665555 3333333 235666666666555332
Q ss_pred ---hhccCCCCCCEEEecCCC
Q 037604 374 ---ASIKQLSQLSSLELNDCK 391 (540)
Q Consensus 374 ---~~l~~l~~L~~L~l~~~~ 391 (540)
..+..+++|+.|++++|.
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHhcCCCccEEEeccCC
Confidence 123445555555555554
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.3e-17 Score=172.63 Aligned_cols=181 Identities=19% Similarity=0.239 Sum_probs=94.9
Q ss_pred CCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCC
Q 037604 193 DLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSD 272 (540)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~ 272 (540)
+++.|++++|.+.+ +|..+ .++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 44555555444332 33322 244555555554433 333 234555555555555555554 332 555555555
Q ss_pred CcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChh
Q 037604 273 CSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQE 352 (540)
Q Consensus 273 ~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 352 (540)
|.+.+ +|. .+++|+.|++++|.++.+|. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.++.+|.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-
Confidence 54444 333 34555555555555555544 34555666666655444 444 33 566666666666665555
Q ss_pred hcCCCCC-------cEEEecCCCCcccchhccCCCCCCEEEecCCCCCCcCC
Q 037604 353 IARLSSL-------IDLHIGGNNFQSLPASIKQLSQLSSLELNDCKMLQSLP 397 (540)
Q Consensus 353 ~~~l~~L-------~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 397 (540)
+.. +| +.|++++|+++.+|..+..+++|+.|++++|++.+.+|
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 332 44 66666666666666666666666666666666655444
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=3.6e-17 Score=169.37 Aligned_cols=165 Identities=22% Similarity=0.244 Sum_probs=93.4
Q ss_pred CCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccC
Q 037604 192 TDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVS 271 (540)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 271 (540)
++|++|++++|.+. .+| ..+++|++|++++|.+.+ +|. +.. +|++|++++|.++.+|. .+++|+.|+++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCC
Confidence 34455555544433 333 224455555555544333 333 322 55555555555555554 34555555555
Q ss_pred CCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCC-------cEEeccCC
Q 037604 272 DCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSL-------VALHIRNF 344 (540)
Q Consensus 272 ~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L-------~~L~l~~~ 344 (540)
+|.+.+ +|. .+++|++|++++|.++++|. +. ++|+.|++++|.+. .+|. +.. +| +.|++++|
T Consensus 149 ~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 149 NNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCREN 217 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSS
T ss_pred CCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCC
Confidence 555443 333 34556666666666665555 33 56666666666544 3443 332 45 88888888
Q ss_pred CCCCCChhhcCCCCCcEEEecCCCCc-ccchhccC
Q 037604 345 AVMEIPQEIARLSSLIDLHIGGNNFQ-SLPASIKQ 378 (540)
Q Consensus 345 ~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~l~~ 378 (540)
.++.+|..+..+++|+.|++++|.++ .+|..+..
T Consensus 218 ~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 218 RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 88888888888888899999888876 45555443
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.4e-17 Score=157.50 Aligned_cols=169 Identities=22% Similarity=0.265 Sum_probs=101.2
Q ss_pred CCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEc
Q 037604 215 LRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSA 294 (540)
Q Consensus 215 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 294 (540)
+++|++|++++|.+.. ++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.+.+ ++ .+..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 4445555555543322 22 24555555555555555555444 5555555555555554433 22 2555566666666
Q ss_pred cCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccch
Q 037604 295 FGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPA 374 (540)
Q Consensus 295 ~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 374 (540)
++|.++++ ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+++. +..+++|+.|++++|.++.++.
T Consensus 120 ~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 120 EHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp TTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence 66666555 2455566666666666665443 346667777777777777777655 6777777777777777777663
Q ss_pred hccCCCCCCEEEecCCCCC
Q 037604 375 SIKQLSQLSSLELNDCKML 393 (540)
Q Consensus 375 ~l~~l~~L~~L~l~~~~~~ 393 (540)
+..+++|+.|++++|++.
T Consensus 196 -l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -GTTCTTCSEEEEEEEEEE
T ss_pred -hccCCCCCEEECcCCccc
Confidence 667777777777777543
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=3.6e-17 Score=156.33 Aligned_cols=175 Identities=19% Similarity=0.249 Sum_probs=136.1
Q ss_pred ccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCe
Q 037604 188 IECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKG 267 (540)
Q Consensus 188 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 267 (540)
...+++|++|++++|.+. .++. +..+++|++|++++|.+.+. +. +..+++|++|++++|.++.++. +..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~~-~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcc-cChh-HhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 345677788888777643 3333 67777888888888766553 33 7778888888888888877654 778888888
Q ss_pred EccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCC
Q 037604 268 LSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVM 347 (540)
Q Consensus 268 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 347 (540)
|++++|.+.+. ..+..+++|++|++++|.++++ ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 88888776553 3577788888888888888887 567888999999999998776544 888999999999999998
Q ss_pred CCChhhcCCCCCcEEEecCCCCcccc
Q 037604 348 EIPQEIARLSSLIDLHIGGNNFQSLP 373 (540)
Q Consensus 348 ~~~~~~~~l~~L~~L~l~~~~l~~lp 373 (540)
+++. +..+++|+.|++++|.++..|
T Consensus 192 ~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 DLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp BCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred CChh-hccCCCCCEEECcCCcccCCc
Confidence 8864 889999999999999987655
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=6.3e-17 Score=146.75 Aligned_cols=173 Identities=18% Similarity=0.172 Sum_probs=110.0
Q ss_pred EEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCcc-ccCCCCccEEEccCCCC
Q 037604 244 CINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSS-VADSNVLGILDFSRCKG 322 (540)
Q Consensus 244 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~ 322 (540)
.++.+++.++.+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.++.++.. +..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4555555565555443 34666666666666554444556667777777777777666443 46667777777777766
Q ss_pred CCcccccccCCCCCcEEeccCCCCCCCChh-hcCCCCCcEEEecCCCCcccchh-ccCCCCCCEEEecCCCCCCcCCCCC
Q 037604 323 LESFPRSLLGLSSLVALHIRNFAVMEIPQE-IARLSSLIDLHIGGNNFQSLPAS-IKQLSQLSSLELNDCKMLQSLPELP 400 (540)
Q Consensus 323 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~ 400 (540)
.+..+..+..+++|++|++++|.+..++.. +..+++|+.|++++|+++.++.. +..+++|++|++++|++....
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~---- 164 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC---- 164 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT----
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC----
Confidence 655555566777777777777777775543 56777888888888877766654 567777888888777654332
Q ss_pred CCccEEEecCCCCCCcCCCCCC
Q 037604 401 LCLKYLHLRDCKMLQSLPALPL 422 (540)
Q Consensus 401 ~~L~~L~l~~~~~l~~~~~~~~ 422 (540)
++|+.|+++.|...+.+|..+.
T Consensus 165 ~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 165 PGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TTTHHHHHHHHHCTTTBBCTTS
T ss_pred CCHHHHHHHHHhCCceeeccCc
Confidence 3455555555555555554433
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.6e-16 Score=144.01 Aligned_cols=174 Identities=17% Similarity=0.159 Sum_probs=98.8
Q ss_pred EEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCC
Q 037604 173 RLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAI 252 (540)
Q Consensus 173 ~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 252 (540)
.++.+.+.++.+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3444455555666443 34677777777765544444456667777777777655544444456666777777777666
Q ss_pred cccCcc-cCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCcc-ccCCCCccEEEccCCCCCCcccccc
Q 037604 253 TELPSS-FENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSS-VADSNVLGILDFSRCKGLESFPRSL 330 (540)
Q Consensus 253 ~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l 330 (540)
+.++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++++.. +..+++|++|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------- 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------- 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------
Confidence 655543 45666666666666655544444455666666666666666655433 455555555555555432
Q ss_pred cCCCCCcEEeccCCCCCC-CChhhcC
Q 037604 331 LGLSSLVALHIRNFAVME-IPQEIAR 355 (540)
Q Consensus 331 ~~~~~L~~L~l~~~~~~~-~~~~~~~ 355 (540)
+.++.|+.|+++.|.+.+ +|.+++.
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred cCCCCHHHHHHHHHhCCceeeccCcc
Confidence 223445555555544443 4444433
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=6.2e-17 Score=145.36 Aligned_cols=151 Identities=18% Similarity=0.295 Sum_probs=103.7
Q ss_pred hCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCC-CCccccCCCCccEE
Q 037604 237 EKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQ-LPSSVADSNVLGIL 315 (540)
Q Consensus 237 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L 315 (540)
+.+++|+.|++++|.++.+| .+..+++|++|++++|... .+ ..+..+++|++|++++|.++. .+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 44556666666666666665 4666666677776666322 22 245666777777777777665 35566677777777
Q ss_pred EccCCCCCCcccccccCCCCCcEEeccCCC-CCCCChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCCC
Q 037604 316 DFSRCKGLESFPRSLLGLSSLVALHIRNFA-VMEIPQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCKM 392 (540)
Q Consensus 316 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 392 (540)
++++|.+.+..+..++.+++|++|++++|. +.+++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 777777766666667777888888888886 66665 5777888888888888887776 677778888888888764
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=3e-16 Score=164.36 Aligned_cols=169 Identities=21% Similarity=0.258 Sum_probs=88.7
Q ss_pred CCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEc
Q 037604 215 LRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSA 294 (540)
Q Consensus 215 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 294 (540)
+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+..++. +..+++|+.|++++|.+.+ ++ .+..+++|+.|++
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 4444444444443222 22 24444555555555555444443 4445555555555544332 22 3445555555555
Q ss_pred cCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccch
Q 037604 295 FGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPA 374 (540)
Q Consensus 295 ~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 374 (540)
++|.+..++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.++++ +..+++|+.|+|++|.++.++
T Consensus 117 s~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~- 191 (605)
T 1m9s_A 117 EHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR- 191 (605)
T ss_dssp TTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-
T ss_pred cCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-
Confidence 555555542 345555555566655554443 345556666666666666665444 566666666666666666554
Q ss_pred hccCCCCCCEEEecCCCCC
Q 037604 375 SIKQLSQLSSLELNDCKML 393 (540)
Q Consensus 375 ~l~~l~~L~~L~l~~~~~~ 393 (540)
.+..+++|+.|++++|++.
T Consensus 192 ~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GGTTCTTCSEEECCSEEEE
T ss_pred HHccCCCCCEEEccCCcCc
Confidence 3556666666666666543
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=1.1e-15 Score=140.49 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=120.3
Q ss_pred CCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCc-cccCCCCccEEEccCC
Q 037604 242 LKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPS-SVADSNVLGILDFSRC 320 (540)
Q Consensus 242 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~ 320 (540)
-+.++.+++.++.+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567777777777776543 778888888888877777778888888888888888888754 4577888888888888
Q ss_pred CCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccch-hccCCCCCCEEEecCCCCCC
Q 037604 321 KGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPA-SIKQLSQLSSLELNDCKMLQ 394 (540)
Q Consensus 321 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~ 394 (540)
.+.+..+..+..+++|++|++++|.+..+|..+..+++|+.|++++|+++.++. .+..+++|+.|++++|++..
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 877666666778888888888888888888888888888888888888887774 46778888888888887553
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=5.2e-16 Score=162.53 Aligned_cols=175 Identities=21% Similarity=0.271 Sum_probs=132.2
Q ss_pred ccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCe
Q 037604 188 IECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKG 267 (540)
Q Consensus 188 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 267 (540)
+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+..+| .+..+++|+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 455677777788777643 334 37777888888888876655333 777888888888888887765 5777888888
Q ss_pred EccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCC
Q 037604 268 LSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVM 347 (540)
Q Consensus 268 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 347 (540)
|++++|.+.+ + ..+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+.
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 8888877665 2 3477788888888888888877 567788888888888888776555 778888888888888888
Q ss_pred CCChhhcCCCCCcEEEecCCCCcccc
Q 037604 348 EIPQEIARLSSLIDLHIGGNNFQSLP 373 (540)
Q Consensus 348 ~~~~~~~~l~~L~~L~l~~~~l~~lp 373 (540)
+++ .+..+++|+.|++++|.+...|
T Consensus 189 ~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 189 DLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp BCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CCh-HHccCCCCCEEEccCCcCcCCc
Confidence 874 5788888888888888876554
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.5e-16 Score=141.38 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=94.9
Q ss_pred CCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEc
Q 037604 215 LRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSA 294 (540)
Q Consensus 215 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 294 (540)
+++|++|++++|.+. .++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 445555555554433 333 3555556666666665554443 4555666666666666655555556666666777777
Q ss_pred cCCCCCC-CCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCc
Q 037604 295 FGSAISQ-LPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 295 ~~~~l~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 370 (540)
++|.+++ .+..+..+++|++|++++|...+.++ .+..+++|++|++++|.+.+++ .+..+++|+.|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 7766664 35556667777777777776444454 4677778888888888877766 6777888888888888764
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.7e-16 Score=149.22 Aligned_cols=169 Identities=22% Similarity=0.265 Sum_probs=113.3
Q ss_pred CCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEc
Q 037604 215 LRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSA 294 (540)
Q Consensus 215 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 294 (540)
+.++..++++++.+.+ ++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+..+ +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3445555666544332 33 4566667777777777776666 46667777777777766554333 667777777777
Q ss_pred cCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccch
Q 037604 295 FGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPA 374 (540)
Q Consensus 295 ~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 374 (540)
++|.+++++.... ++|+.|++++|.+.+. ..+..+++|++|++++|.+++++ .+..+++|+.|++++|+++.+ .
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~ 166 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G 166 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T
T ss_pred CCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H
Confidence 7777776654333 6777777777776542 24677777888888888777765 577778888888888887766 4
Q ss_pred hccCCCCCCEEEecCCCCCC
Q 037604 375 SIKQLSQLSSLELNDCKMLQ 394 (540)
Q Consensus 375 ~l~~l~~L~~L~l~~~~~~~ 394 (540)
.+..+++|+.|++++|++..
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEEC
T ss_pred HhccCCCCCEEeCCCCcccC
Confidence 56777788888888776543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=2.1e-15 Score=137.71 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=70.7
Q ss_pred EEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC-CccccCCCCccEEEccCCCCC
Q 037604 245 INLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL-PSSVADSNVLGILDFSRCKGL 323 (540)
Q Consensus 245 L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~ 323 (540)
++++++.++.+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 16 v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 4444444444443322 3444444444444333333444444444444444444443 334444444444444444444
Q ss_pred CcccccccCCCCCcEEeccCCCCCCC-ChhhcCCCCCcEEEecCCCCcccch-hccCCCCCCEEEecCCC
Q 037604 324 ESFPRSLLGLSSLVALHIRNFAVMEI-PQEIARLSSLIDLHIGGNNFQSLPA-SIKQLSQLSSLELNDCK 391 (540)
Q Consensus 324 ~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 391 (540)
...+..+.++++|++|++++|.+..+ +..+..+++|+.|++++|+++.++. .+..+++|++|++++|+
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 33333344555555555555555553 3345555666666666666655543 24555666666666654
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=2.6e-15 Score=137.05 Aligned_cols=148 Identities=17% Similarity=0.205 Sum_probs=102.6
Q ss_pred EEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCC
Q 037604 173 RLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAI 252 (540)
Q Consensus 173 ~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 252 (540)
.++++++.++.+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 45555566666666543 5777777777776555555677777777777777776666677777777888888888777
Q ss_pred cccCcc-cCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCc-cccCCCCccEEEccCCCC
Q 037604 253 TELPSS-FENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPS-SVADSNVLGILDFSRCKG 322 (540)
Q Consensus 253 ~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~ 322 (540)
+.+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 777655 4667777777777777766666667777777777777777776643 355566666666666653
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.2e-18 Score=181.55 Aligned_cols=186 Identities=17% Similarity=0.156 Sum_probs=97.1
Q ss_pred CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCC-------------CCcccCCCC-ccCCCcEEE-cc
Q 037604 92 KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCK-------------SLRSFPSNL-HFVCPVTID-FS 156 (540)
Q Consensus 92 ~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~-------------~~~~~~~~~-~l~~L~~L~-L~ 156 (540)
..++|+.|+|++|.++. +|+.++++++|+.|++++|. ..+..|..+ .+++|+.|+ ++
T Consensus 347 ~~~~L~~L~Ls~n~L~~--------Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTV--------LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp TTTTSSSCCCCHHHHHH--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred cCccceeccCChhhHHh--------hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 57788889999998876 67788888889888886543 233333333 445555554 33
Q ss_pred CCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhh
Q 037604 157 YCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEIL 236 (540)
Q Consensus 157 ~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 236 (540)
.+.+ ..++.+.+..|.++.++. ..|+.|++++|.+.+ +|. ++.+++|+.|++++|.+. .+|..+
T Consensus 419 ~n~~--------~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~ 482 (567)
T 1dce_A 419 AAYL--------DDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL 482 (567)
T ss_dssp HHHH--------HHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred hccc--------chhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh
Confidence 2211 112222233333333322 135555555554332 343 455555555555554433 444455
Q ss_pred hCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcC-CCCCCCCCCCcEEEccCCCCCCC
Q 037604 237 EKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKL-PDNIGNLESLHHMSAFGSAISQL 302 (540)
Q Consensus 237 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~l~~l 302 (540)
+.+++|+.|++++|.++.+| .+..+++|+.|++++|.+.+.. |..++.+++|+.|++++|.+++.
T Consensus 483 ~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 483 AALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 55555555555555555544 4455555555555555444433 44444555555555555554444
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=1.2e-15 Score=150.67 Aligned_cols=172 Identities=19% Similarity=0.153 Sum_probs=105.1
Q ss_pred EEEcccCCceeccccccCCCCCCEEEcccCccccccchhcC-CCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCC
Q 037604 173 RLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFC-KLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTA 251 (540)
Q Consensus 173 ~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 251 (540)
.++++++.++.+|..+. +.++.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 44555555666665442 3567777777765554444455 67777777777766655555567777777777777777
Q ss_pred CcccCc-ccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccc----cCCCCccEEEccCCCCCCcc
Q 037604 252 ITELPS-SFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSV----ADSNVLGILDFSRCKGLESF 326 (540)
Q Consensus 252 l~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~----~~l~~L~~L~l~~~~~~~~~ 326 (540)
++.++. .+..+++|+.|++++|.+....+..+..+++|++|++++|.++.+|..+ ..+++|+.|++++|.+....
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 776654 3666777777777777766666666777777777777777777765543 34555555555555544433
Q ss_pred cccccCCCC--CcEEeccCCCC
Q 037604 327 PRSLLGLSS--LVALHIRNFAV 346 (540)
Q Consensus 327 ~~~l~~~~~--L~~L~l~~~~~ 346 (540)
+..+..++. ++.|++++|.+
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCE
T ss_pred HHHhhhccHhhcceEEecCCCc
Confidence 333444443 24455555544
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=2.7e-15 Score=136.92 Aligned_cols=147 Identities=15% Similarity=0.190 Sum_probs=79.7
Q ss_pred EEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCC-CCCCCCCCCcEEEccCCCCCCCCc-cccCCCCccEEEccCCC
Q 037604 244 CINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLP-DNIGNLESLHHMSAFGSAISQLPS-SVADSNVLGILDFSRCK 321 (540)
Q Consensus 244 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~ 321 (540)
.++++++.++.+|..+. ..++.|++++|.+.+..+ ..+..+++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 44455555554444332 233455555544444322 224455555555555555555432 45555555555555555
Q ss_pred CCCcccccccCCCCCcEEeccCCCCCCC-ChhhcCCCCCcEEEecCCCCccc-chhccCCCCCCEEEecCCCC
Q 037604 322 GLESFPRSLLGLSSLVALHIRNFAVMEI-PQEIARLSSLIDLHIGGNNFQSL-PASIKQLSQLSSLELNDCKM 392 (540)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~ 392 (540)
+.+..+..+..+++|++|++++|.+..+ |..+..+++|+.|++++|+++.+ |..+..+++|++|++++|++
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 5554445555666666666666666653 44556666666666666666655 44556666666666666653
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=8.7e-18 Score=174.94 Aligned_cols=193 Identities=18% Similarity=0.163 Sum_probs=112.3
Q ss_pred cCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCc-------------CCCcCchhhhCCCCCCEEE-cCCCCCcc
Q 037604 189 ECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCL-------------NLERFPEILEKMEHLKCIN-LDRTAITE 254 (540)
Q Consensus 189 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~l~~ 254 (540)
..+++|+.|++++|.+ +.+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 4567777777777654 4677777777777777776543 3444556666677777776 44443322
Q ss_pred cCcc------cCC--CCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcc
Q 037604 255 LPSS------FEN--LTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESF 326 (540)
Q Consensus 255 l~~~------~~~--l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~ 326 (540)
++.. +.. ...|+.|++++|.+.+ +|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|.+.+ +
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-C
Confidence 2110 000 0236666666655544 444 566666666666666666666666666666666666666554 4
Q ss_pred cccccCCCCCcEEeccCCCCCCC--ChhhcCCCCCcEEEecCCCCcccchhc----cCCCCCCEEE
Q 037604 327 PRSLLGLSSLVALHIRNFAVMEI--PQEIARLSSLIDLHIGGNNFQSLPASI----KQLSQLSSLE 386 (540)
Q Consensus 327 ~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~l----~~l~~L~~L~ 386 (540)
| .++.+++|++|++++|.++++ |..++.+++|+.|++++|.++.+|... ..+|+|+.|+
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 4 556666666666666666664 555666666666666666665544322 2355555554
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=7.1e-15 Score=134.19 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=62.2
Q ss_pred eEEEcccCCceecc--ccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCC
Q 037604 172 TRLYLGCSAIEEVP--SSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDR 249 (540)
Q Consensus 172 ~~L~L~~~~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 249 (540)
++|++++|.++.++ ..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 44444444444442 1244555555555555554444343455555555555555554444444455555555555555
Q ss_pred CCCccc-CcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCC
Q 037604 250 TAITEL-PSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAI 299 (540)
Q Consensus 250 ~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l 299 (540)
|.++.+ |..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 555543 23344444555555555444444444444444444444444443
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=2.9e-15 Score=147.83 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=75.4
Q ss_pred CCEEEcCCCCCcccCcc-cC-CCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCc-cccCCCCccEEEcc
Q 037604 242 LKCINLDRTAITELPSS-FE-NLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPS-SVADSNVLGILDFS 318 (540)
Q Consensus 242 L~~L~l~~~~l~~l~~~-~~-~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~ 318 (540)
++.|++++|.++.++.. +. .+++|+.|++++|.+.+..+..|..+++|++|++++|.++.++. .+..+++|+.|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44455555555444332 22 44555555555554444444445555555555555555554432 34455555555555
Q ss_pred CCCCCCcccccccCCCCCcEEeccCCCCCCCChhh----cCCCCCcEEEecCCCCcccch-hccCCCC--CCEEEecCCC
Q 037604 319 RCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEI----ARLSSLIDLHIGGNNFQSLPA-SIKQLSQ--LSSLELNDCK 391 (540)
Q Consensus 319 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~l~~L~~L~l~~~~l~~lp~-~l~~l~~--L~~L~l~~~~ 391 (540)
+|.+....+..+..+++|++|++++|.+..+|..+ ..+++|+.|++++|+++.+|. .+..++. ++.|++++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 55555444455555555555555555555555443 345556666666665555542 2344444 2555555554
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=1.5e-14 Score=132.99 Aligned_cols=127 Identities=18% Similarity=0.152 Sum_probs=49.5
Q ss_pred CcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcc-cCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccC
Q 037604 218 LVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSS-FENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFG 296 (540)
Q Consensus 218 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~ 296 (540)
|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 121 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccC
Confidence 33333333333333333333334444444444444333322 23344444444444433333233334444444444444
Q ss_pred CCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCC
Q 037604 297 SAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNF 344 (540)
Q Consensus 297 ~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 344 (540)
|.++.+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 122 N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 122 NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 444444444444444444444444333222222333333333333333
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=2.8e-15 Score=140.84 Aligned_cols=152 Identities=19% Similarity=0.190 Sum_probs=91.5
Q ss_pred cCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcE
Q 037604 212 FCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHH 291 (540)
Q Consensus 212 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 291 (540)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.+.+ ++. +.. ++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCE
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccE
Confidence 334444555555544332 222 34455555555555555555444 5555555555555554433 222 112 56666
Q ss_pred EEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcc
Q 037604 292 MSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQS 371 (540)
Q Consensus 292 L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 371 (540)
|++++|.+++++ .+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+.++ ..+..+++|+.|++++|.++.
T Consensus 111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 111 LFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred EEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 666666666654 366667777777777775543 2 466777888888888888777 567788888888888888776
Q ss_pred cc
Q 037604 372 LP 373 (540)
Q Consensus 372 lp 373 (540)
.|
T Consensus 187 ~~ 188 (263)
T 1xeu_A 187 EP 188 (263)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=8.3e-15 Score=127.77 Aligned_cols=128 Identities=18% Similarity=0.254 Sum_probs=75.3
Q ss_pred CCCCeEccCCCcCC-CcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEec
Q 037604 263 TGLKGLSVSDCSKL-DKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHI 341 (540)
Q Consensus 263 ~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 341 (540)
++|+.|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 34555555554443 34444445555555555555555555 44555556666666666655545555555666666666
Q ss_pred cCCCCCCCC--hhhcCCCCCcEEEecCCCCcccch----hccCCCCCCEEEecCCC
Q 037604 342 RNFAVMEIP--QEIARLSSLIDLHIGGNNFQSLPA----SIKQLSQLSSLELNDCK 391 (540)
Q Consensus 342 ~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~----~l~~l~~L~~L~l~~~~ 391 (540)
++|.+.+++ ..+..+++|+.|++++|.++.+|. .+..+++|++|++++|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 666666654 456666677777777776666654 55666777777776665
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=2.1e-14 Score=125.24 Aligned_cols=134 Identities=19% Similarity=0.145 Sum_probs=93.1
Q ss_pred CCCCEEEcCCCCCc--ccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCC-CCccccCCCCccEEE
Q 037604 240 EHLKCINLDRTAIT--ELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQ-LPSSVADSNVLGILD 316 (540)
Q Consensus 240 ~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L~ 316 (540)
++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++ +|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666665 5555556666666666666655443 456667777777777777776 455555677777777
Q ss_pred ccCCCCCCcc-cccccCCCCCcEEeccCCCCCCCCh----hhcCCCCCcEEEecCCCCcccchh
Q 037604 317 FSRCKGLESF-PRSLLGLSSLVALHIRNFAVMEIPQ----EIARLSSLIDLHIGGNNFQSLPAS 375 (540)
Q Consensus 317 l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~~l~~lp~~ 375 (540)
+++|.+.+.. +..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+..+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 7777765532 2567788888888888888888765 678888888888888888777753
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=1.4e-15 Score=163.20 Aligned_cols=190 Identities=18% Similarity=0.154 Sum_probs=88.1
Q ss_pred CCCcEEeccCCcCCCcCchhhhCCCCCCEEE-----cCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCc
Q 037604 216 RSLVDLCLNGCLNLERFPEILEKMEHLKCIN-----LDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLH 290 (540)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~-----l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 290 (540)
+.++.|++.++.... .+..+.....|..+. +..|.+...+..+..+++|+.|++++|.+. .+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 446667776654433 233222222222222 222333334455666777777777776654 4555566677777
Q ss_pred EEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChhhcCCCCCcEEEecCCCCc
Q 037604 291 HMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 291 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 370 (540)
+|++++|.++.+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+..+|..++.+++|+.|+|++|.++
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 777777777777766777777777777777755 5566677777777777777777667766777777777777777766
Q ss_pred -ccchhccCCC-CCCEEEecCCCCCCcCCCCCCCccEEEecCC
Q 037604 371 -SLPASIKQLS-QLSSLELNDCKMLQSLPELPLCLKYLHLRDC 411 (540)
Q Consensus 371 -~lp~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~ 411 (540)
.+|..+..+. .+..+++++|.+.+.+| ..|+.|++++|
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p---~~l~~l~l~~n 369 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLP---HERRFIEINTD 369 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CC---------
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCc---cccceeEeecc
Confidence 3333332211 11235566666555444 34555666655
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.2e-14 Score=123.98 Aligned_cols=125 Identities=18% Similarity=0.240 Sum_probs=76.4
Q ss_pred CCCCeEccCCCcCC-CcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEec
Q 037604 263 TGLKGLSVSDCSKL-DKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHI 341 (540)
Q Consensus 263 ~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 341 (540)
++++.|++++|.+. +.+|..+..+++|++|++++|.++++ ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34555555555444 34444455555555555555555555 44555566666666666655555555555667777777
Q ss_pred cCCCCCCCC--hhhcCCCCCcEEEecCCCCcccch----hccCCCCCCEEEec
Q 037604 342 RNFAVMEIP--QEIARLSSLIDLHIGGNNFQSLPA----SIKQLSQLSSLELN 388 (540)
Q Consensus 342 ~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~----~l~~l~~L~~L~l~ 388 (540)
++|.+.+++ ..+..+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777766643 556677777777777777766654 46667777777665
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=3e-15 Score=160.77 Aligned_cols=120 Identities=21% Similarity=0.247 Sum_probs=63.7
Q ss_pred chhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCC
Q 037604 209 STRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLES 288 (540)
Q Consensus 209 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~ 288 (540)
+..+..+..|+.|++++|.+. .+|..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+. .+|..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 334455555555555554433 3444445555555555555555555555555555555555555544 44555555555
Q ss_pred CcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccc
Q 037604 289 LHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSL 330 (540)
Q Consensus 289 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l 330 (540)
|++|++++|.++.+|..++.+++|+.|++++|.+.+.+|..+
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 555555555555555555555555555555555555554443
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=3.5e-13 Score=131.16 Aligned_cols=252 Identities=12% Similarity=-0.023 Sum_probs=117.9
Q ss_pred cCcEEEeecCCCCC--CCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccC--------CCCCCEEecCCCCCCccc
Q 037604 72 EKLRYLHWDTYPLR--ILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQN--------FKYLSMLNFEGCKSLRSF 141 (540)
Q Consensus 72 ~~L~~L~l~~~~l~--~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~--------l~~L~~L~L~~~~~~~~~ 141 (540)
.+|++|+|++|.+. ..+... .+.++.+.+..|.|. +.+|.+ +++|+.+++.+ .+...-
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~-~~~~~~~~~~~~~I~----------~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~ 116 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGT-YPNGKFYIYMANFVP----------AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE 116 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSS-SGGGCCEEECTTEEC----------TTTTEEEETTEEEECTTCCC-CBCT-TCCEEC
T ss_pred ccCeEEecCcceeEEecCcccc-ccccccccccccccC----------HHHhcccccccccccCCCcEEECCc-cccchh
Confidence 47888888888876 333221 222455555555443 134555 78888888876 444333
Q ss_pred CCCC-ccCCCcEEEccCCcCccccCCCCCCe---eEEEcccCC----ceecc-ccccCCCCCC-EEEcccCccccc-cch
Q 037604 142 PSNL-HFVCPVTIDFSYCVNLIEFPQISGKI---TRLYLGCSA----IEEVP-SSIECLTDLE-VLDLMYCKRLKR-IST 210 (540)
Q Consensus 142 ~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l---~~L~L~~~~----l~~l~-~~~~~l~~L~-~L~l~~~~~~~~-~~~ 210 (540)
+..+ .+++|+.++++.|.+....+..+... ..+...... ...+. ..+..+..|+ .+.+........ +..
T Consensus 117 ~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~ 196 (329)
T 3sb4_A 117 DAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK 196 (329)
T ss_dssp TTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred HHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhh
Confidence 4445 77888888887776543333222221 222221110 01111 1133344444 333332211110 000
Q ss_pred hcCCCCCCcEEeccCCcCCCcCchhh-hCCCCCCEEEcCCCCCcccCcc-cCCCCCCCeEccCCCcCCCcCCCCCCCCCC
Q 037604 211 RFCKLRSLVDLCLNGCLNLERFPEIL-EKMEHLKCINLDRTAITELPSS-FENLTGLKGLSVSDCSKLDKLPDNIGNLES 288 (540)
Q Consensus 211 ~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~ 288 (540)
.-....+++.+.+.+. ........+ ..+++|+.+++++|.++.+|.. |..+++|+.+++.++ +...-+..|..+++
T Consensus 197 ~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~ 274 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR 274 (329)
T ss_dssp TTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh
Confidence 1112445555555543 111111111 2366777777777777766653 666667777776664 33333344556666
Q ss_pred Cc-EEEccCCCCCCC-CccccCCCCccEEEccCCCCCCcccccccCCCCCcE
Q 037604 289 LH-HMSAFGSAISQL-PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVA 338 (540)
Q Consensus 289 L~-~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 338 (540)
|+ .+++.+ .++.+ +..|.++++|+.+++..+.+...-+.+|.++++|+.
T Consensus 275 L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 275 LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 66 666554 34333 233344444444444333333322333333333333
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=9.8e-14 Score=118.29 Aligned_cols=124 Identities=20% Similarity=0.160 Sum_probs=78.5
Q ss_pred CCCCEEEcCCCCCc--ccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCC-CCccccCCCCccEEE
Q 037604 240 EHLKCINLDRTAIT--ELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQ-LPSSVADSNVLGILD 316 (540)
Q Consensus 240 ~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L~ 316 (540)
++++.|++++|.++ .+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++ +|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 4555555555566666655554443 445566666666666666666 455555567777777
Q ss_pred ccCCCCCCc-ccccccCCCCCcEEeccCCCCCCCCh----hhcCCCCCcEEEec
Q 037604 317 FSRCKGLES-FPRSLLGLSSLVALHIRNFAVMEIPQ----EIARLSSLIDLHIG 365 (540)
Q Consensus 317 l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~ 365 (540)
+++|.+.+. .+..+..+++|++|++++|.+++++. .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777776552 33567777888888888888777654 56778888888765
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=4.1e-13 Score=119.65 Aligned_cols=127 Identities=23% Similarity=0.243 Sum_probs=78.4
Q ss_pred eEEEcccCCceeccccccCCCCCCEEEcccCccccccch-hcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCC
Q 037604 172 TRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRIST-RFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRT 250 (540)
Q Consensus 172 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 250 (540)
+.++++++.++++|..+.. ++++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3455555566666654432 667777777665443332 2566667777777776666655666666677777777777
Q ss_pred CCcccCcc-cCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCC
Q 037604 251 AITELPSS-FENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAIS 300 (540)
Q Consensus 251 ~l~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~ 300 (540)
.++.++.. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 66655443 556666666666666666655666666666666666666554
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=6.2e-13 Score=118.45 Aligned_cols=86 Identities=23% Similarity=0.284 Sum_probs=38.7
Q ss_pred CCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCC-hhhcCCCCCcEEEecCCCCccc-chhccCCCCCCEE
Q 037604 308 DSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIP-QEIARLSSLIDLHIGGNNFQSL-PASIKQLSQLSSL 385 (540)
Q Consensus 308 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L 385 (540)
.+++|++|++++|.+.+..|..+.++++|++|++++|.+..++ ..+..+++|++|++++|+++.+ |..+..+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 3333444444444433333334444444444444444444422 2244445555555555554433 3344455555555
Q ss_pred EecCCCCC
Q 037604 386 ELNDCKML 393 (540)
Q Consensus 386 ~l~~~~~~ 393 (540)
++++|++.
T Consensus 132 ~L~~N~l~ 139 (192)
T 1w8a_A 132 NLASNPFN 139 (192)
T ss_dssp ECTTCCBC
T ss_pred EeCCCCcc
Confidence 55555443
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2.2e-13 Score=119.59 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=63.3
Q ss_pred hhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEE
Q 037604 236 LEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGIL 315 (540)
Q Consensus 236 l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L 315 (540)
+.++.+|+.|++++|.++.++......++|+.|++++|.+.+. ..+..+++|++|++++|.++++|..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~--------- 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL--------- 83 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH---------
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch---------
Confidence 3445566666666666665543222222555555555544432 34444555555555555554443222
Q ss_pred EccCCCCCCcccccccCCCCCcEEeccCCCCCCCCh--hhcCCCCCcEEEecCCCCcccchh----ccCCCCCCEEEecC
Q 037604 316 DFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQ--EIARLSSLIDLHIGGNNFQSLPAS----IKQLSQLSSLELND 389 (540)
Q Consensus 316 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~lp~~----l~~l~~L~~L~l~~ 389 (540)
+..+++|++|++++|.+.++|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++
T Consensus 84 --------------~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 84 --------------DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp --------------HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred --------------hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 2344444444444444444443 344455555555555555444442 44455555555554
Q ss_pred C
Q 037604 390 C 390 (540)
Q Consensus 390 ~ 390 (540)
|
T Consensus 150 n 150 (176)
T 1a9n_A 150 V 150 (176)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=2.2e-13 Score=119.57 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=82.8
Q ss_pred cCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcE
Q 037604 212 FCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHH 291 (540)
Q Consensus 212 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 291 (540)
+..+.+|++|++++|.+. .++......++|++|++++|.++.+ ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 567889999999998766 4554333344999999999999988 57899999999999999887644344478899999
Q ss_pred EEccCCCCCCCCc--cccCCCCccEEEccCCCC
Q 037604 292 MSAFGSAISQLPS--SVADSNVLGILDFSRCKG 322 (540)
Q Consensus 292 L~l~~~~l~~l~~--~~~~l~~L~~L~l~~~~~ 322 (540)
|++++|.++.+|. .+..+++|+.|++++|.+
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 9999998877665 444555555555555443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=2.1e-12 Score=114.95 Aligned_cols=103 Identities=21% Similarity=0.315 Sum_probs=48.3
Q ss_pred CcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCCh-hhcCCCCCcEEEecCC
Q 037604 289 LHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQ-EIARLSSLIDLHIGGN 367 (540)
Q Consensus 289 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 367 (540)
|++|++++|.++.+|..+..+++|+.|++++|.+.+..+..+.++++|++|++++|.+..++. .+..+++|+.|++++|
T Consensus 33 l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence 333333334333333334444444444444444443333344444555555555555544332 3445555555555555
Q ss_pred CCcccch-hccCCCCCCEEEecCCC
Q 037604 368 NFQSLPA-SIKQLSQLSSLELNDCK 391 (540)
Q Consensus 368 ~l~~lp~-~l~~l~~L~~L~l~~~~ 391 (540)
.++.+|. .+..+++|+.|++++|+
T Consensus 113 ~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 113 DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCeeChhhhhcCccccEEEeCCCC
Confidence 5555443 24455555555555554
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=2.1e-12 Score=114.98 Aligned_cols=104 Identities=21% Similarity=0.347 Sum_probs=47.6
Q ss_pred CeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCC
Q 037604 170 KITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDR 249 (540)
Q Consensus 170 ~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 249 (540)
++++|++++|.++.+|..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 33444444444444444444555555555555544443334444445555555555444443334444444444444444
Q ss_pred CCCcccCcc-cCCCCCCCeEccCCC
Q 037604 250 TAITELPSS-FENLTGLKGLSVSDC 273 (540)
Q Consensus 250 ~~l~~l~~~-~~~l~~L~~L~l~~~ 273 (540)
|.++.+|.. +..+++|+.|++++|
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 112 NDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCeeChhhhhcCccccEEEeCCC
Confidence 444444332 333444444444443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=7.1e-12 Score=110.05 Aligned_cols=125 Identities=18% Similarity=0.209 Sum_probs=59.6
Q ss_pred CEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCcc-ccCCCCccEEEccCCC
Q 037604 243 KCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSS-VADSNVLGILDFSRCK 321 (540)
Q Consensus 243 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~ 321 (540)
+.++++++.++.+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.++.++.. +..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 45555666665555432 24566666666555443334445555566666665555554332 3444444444444444
Q ss_pred CCCcccccccCCCCCcEEeccCCCCCCCChh-hcCCCCCcEEEecCCCC
Q 037604 322 GLESFPRSLLGLSSLVALHIRNFAVMEIPQE-IARLSSLIDLHIGGNNF 369 (540)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~l 369 (540)
+.+..+..+..+++|++|++++|.+..+|.. +..+++|++|++++|.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 4433333334444444444444444443332 23344444444444443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=7.5e-12 Score=109.88 Aligned_cols=126 Identities=21% Similarity=0.236 Sum_probs=59.8
Q ss_pred EEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCC
Q 037604 173 RLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAI 252 (540)
Q Consensus 173 ~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 252 (540)
.++++.+.++.+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 11 ~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 3444445555555433 24566666666554433333345555555555555544433333345555555555555555
Q ss_pred cccCcc-cCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCC
Q 037604 253 TELPSS-FENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAIS 300 (540)
Q Consensus 253 ~~l~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~ 300 (540)
+.+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 544432 344444555555444443322222334444444444444433
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.35 E-value=9.5e-13 Score=128.07 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=82.9
Q ss_pred CCCCcEEEccCCCCCCCCc-cccCCCCccEEEccCCCCCCcccccccCCCCCc-EEeccCCCCCCC-ChhhcCCCCCcEE
Q 037604 286 LESLHHMSAFGSAISQLPS-SVADSNVLGILDFSRCKGLESFPRSLLGLSSLV-ALHIRNFAVMEI-PQEIARLSSLIDL 362 (540)
Q Consensus 286 l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~-~~~~~~l~~L~~L 362 (540)
+++|+.+++.+|.++.++. .|.++.+|+.+++.++ +...-..+|.++++|+ .+++.+ .+..+ +..|..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 6889999999988888854 5888899999999887 4444456788999999 999988 66665 4678899999999
Q ss_pred EecCCCCcccch-hccCCCCCCEEEe
Q 037604 363 HIGGNNFQSLPA-SIKQLSQLSSLEL 387 (540)
Q Consensus 363 ~l~~~~l~~lp~-~l~~l~~L~~L~l 387 (540)
++.+++++.++. .+.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 999999998875 6889999999874
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.32 E-value=1.3e-10 Score=115.46 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=35.2
Q ss_pred CcEEEeecCCCCCCCCCC-CCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCC
Q 037604 73 KLRYLHWDTYPLRILPSN-FKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCP 150 (540)
Q Consensus 73 ~L~~L~l~~~~l~~l~~~-~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L 150 (540)
+|+.+.+..+ ++.|+.. +.-.+|+.+.+.. .++.+ -+.+|.++++|+.+++.+++.. .++... .+.+|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I-------~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L 205 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQL-------KEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGI 205 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEE-------CSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEe-------hHHHhhCcccCCeeecCCCcce-EechhhEeeccc
Confidence 4555555544 4444443 2223466666553 33332 1234556666666666554332 233322 44555
Q ss_pred cEEEcc
Q 037604 151 VTIDFS 156 (540)
Q Consensus 151 ~~L~L~ 156 (540)
+.+.+.
T Consensus 206 ~~l~lp 211 (401)
T 4fdw_A 206 EEVLLP 211 (401)
T ss_dssp SEEECC
T ss_pred CEEEeC
Confidence 555554
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=1.6e-14 Score=129.63 Aligned_cols=125 Identities=22% Similarity=0.276 Sum_probs=66.0
Q ss_pred hhhCCCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccE
Q 037604 235 ILEKMEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGI 314 (540)
Q Consensus 235 ~l~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 314 (540)
.+..+++|++|++++|.++.+| .+..+++|+.|+++ +|.++.+|..+..+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~------------------------~n~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLG------------------------RNLIKKIENLDAVADTLEE 97 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEE------------------------EEEECSCSSHHHHHHHCSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECC------------------------CCCcccccchhhcCCcCCE
Confidence 4555555555555555554444 34444444444444 4444444444444445555
Q ss_pred EEccCCCCCCcccccccCCCCCcEEeccCCCCCCCCh--hhcCCCCCcEEEecCCCCcccch-----------hccCCCC
Q 037604 315 LDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQ--EIARLSSLIDLHIGGNNFQSLPA-----------SIKQLSQ 381 (540)
Q Consensus 315 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~lp~-----------~l~~l~~ 381 (540)
|++++|.+.+ +| .+..+++|++|++++|.+.+++. .+..+++|++|++++|.++..+. .+..+++
T Consensus 98 L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~ 175 (198)
T 1ds9_A 98 LWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175 (198)
T ss_dssp EEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred EECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCC
Confidence 5555554433 22 34455566666666666665433 46666677777777776543321 2566777
Q ss_pred CCEEE
Q 037604 382 LSSLE 386 (540)
Q Consensus 382 L~~L~ 386 (540)
|+.|+
T Consensus 176 L~~Ld 180 (198)
T 1ds9_A 176 LKKLD 180 (198)
T ss_dssp CSEEC
T ss_pred cEEEC
Confidence 77765
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.26 E-value=5.9e-10 Score=111.11 Aligned_cols=310 Identities=13% Similarity=0.111 Sum_probs=154.4
Q ss_pred cccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCC-CCCccccCcEEEeecCCCCCCCCCC-C-C
Q 037604 16 KGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPN-GLDYLPEKLRYLHWDTYPLRILPSN-F-K 92 (540)
Q Consensus 16 ~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~L~l~~~~l~~l~~~-~-~ 92 (540)
.++.|...||.++++|+.+.+..+ + ..+.+ +|..+ .+|+.+++.++ ++.|+.. + .
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i-------------------~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~ 115 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-V-------------------REIGEFAFENC-SKLEIINIPDS-VKMIGRCTFSG 115 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-C-------------------CEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-c-------------------cCcchhHhhCC-CCCcEEEeCCC-ceEccchhhcc
Confidence 467788888999999999988643 4 34433 55556 48888888654 6666554 2 6
Q ss_pred CCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccccCCCCCCe
Q 037604 93 PKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIEFPQISGKI 171 (540)
Q Consensus 93 ~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l 171 (540)
+..|+.+.+..+ +..+ -..+|..+..++........ ..-...+ .+.+|+.+.+..+.
T Consensus 116 c~~L~~i~~p~~-l~~i-------~~~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~------------ 173 (394)
T 4fs7_A 116 CYALKSILLPLM-LKSI-------GVEAFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM------------ 173 (394)
T ss_dssp CTTCCCCCCCTT-CCEE-------CTTTTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC------------
T ss_pred cccchhhcccCc-eeee-------cceeeecccccccccCcccc--ccchhhhcccCCCcEEecCCcc------------
Confidence 777777766543 2222 11234444433333322221 1112334 66667766665431
Q ss_pred eEEEcccCCceecc-ccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCC
Q 037604 172 TRLYLGCSAIEEVP-SSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRT 250 (540)
Q Consensus 172 ~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 250 (540)
..++ ..+..+.+|+.+.+..+ ....-...|.++..|+.+.+..+. ..+........+|+.+.+...
T Consensus 174 ----------~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~ 240 (394)
T 4fs7_A 174 ----------ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDS 240 (394)
T ss_dssp ----------CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTT
T ss_pred ----------ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCceEEECCC
Confidence 1111 22444555555555443 111222335555556555554421 112222333445555555432
Q ss_pred CCcccC-cccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCccccc
Q 037604 251 AITELP-SSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRS 329 (540)
Q Consensus 251 ~l~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 329 (540)
++.+. ..+..+..++.+.+..+ ........+..+..++........+. ...+..+.+|+.+.+..+ ....-..+
T Consensus 241 -~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 241 -FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp -CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred -ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeec--cccccccccccccccccc-cceechhh
Confidence 22221 23445555666655442 22222334455555555554433221 123444555666655432 11212234
Q ss_pred ccCCCCCcEEeccCCCCCCC-ChhhcCCCCCcEEEecCCCCcccc-hhccCCCCCCEEEecC
Q 037604 330 LLGLSSLVALHIRNFAVMEI-PQEIARLSSLIDLHIGGNNFQSLP-ASIKQLSQLSSLELND 389 (540)
Q Consensus 330 l~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~ 389 (540)
|.++.+|+.+++.++ +..+ ..++..+++|+.+.+..+ ++.+. .++.+|++|+.+++..
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 556666666666533 3333 234556666776666554 55443 2456666777776654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=4.5e-14 Score=126.67 Aligned_cols=142 Identities=18% Similarity=0.196 Sum_probs=114.4
Q ss_pred CCCCeEccCCCcCCCcCCC------CCCCCCCCcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCC
Q 037604 263 TGLKGLSVSDCSKLDKLPD------NIGNLESLHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSL 336 (540)
Q Consensus 263 ~~L~~L~l~~~~~~~~l~~------~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 336 (540)
..++.++++.+.+.+..|. .+..+++|++|++++|.++.+| .+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 3444455555444444443 6777888999999999988888 7888999999999999876 567767778999
Q ss_pred cEEeccCCCCCCCChhhcCCCCCcEEEecCCCCcccch--hccCCCCCCEEEecCCCCCCcCCC-------------CCC
Q 037604 337 VALHIRNFAVMEIPQEIARLSSLIDLHIGGNNFQSLPA--SIKQLSQLSSLELNDCKMLQSLPE-------------LPL 401 (540)
Q Consensus 337 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~-------------~~~ 401 (540)
++|++++|.+.++| .+..+++|+.|++++|+++.++. .+..+++|++|++++|++.+..|. ..+
T Consensus 96 ~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 96 EELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp SEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred CEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 99999999999976 68889999999999999998775 688999999999999987655443 237
Q ss_pred CccEEE
Q 037604 402 CLKYLH 407 (540)
Q Consensus 402 ~L~~L~ 407 (540)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 888886
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.22 E-value=1.7e-09 Score=107.48 Aligned_cols=260 Identities=10% Similarity=0.059 Sum_probs=151.6
Q ss_pred cCcEEEeecCCCCCCCCCC-CCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCC
Q 037604 72 EKLRYLHWDTYPLRILPSN-FKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVC 149 (540)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~-~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~ 149 (540)
..++.+.+.+ .++.|+.. +.-.+|+.+.+..+ ++.+ -..+|.++ +|+.+.+.. .....-+..+ .|.+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I-------~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSI-------GDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYN 181 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEE-------CTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTT
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEE-------CHHhcCCC-CceEEEeCC-CccEehHHHhhCccc
Confidence 3566666554 35555554 32247888888765 5554 22346664 689998885 4433334555 8888
Q ss_pred CcEEEccCCcCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCC
Q 037604 150 PVTIDFSYCVNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNL 229 (540)
Q Consensus 150 L~~L~L~~~~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 229 (540)
|+.+++..|.+ +.++.......+|+.+.+..+ +...-...|.++++|+.+.+..+ ..
T Consensus 182 L~~l~l~~n~l---------------------~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~ 238 (401)
T 4fdw_A 182 LKKADLSKTKI---------------------TKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS 238 (401)
T ss_dssp CCEEECTTSCC---------------------SEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC
T ss_pred CCeeecCCCcc---------------------eEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc
Confidence 88888876543 333333333456666666543 22222334666666776666652 22
Q ss_pred CcCchhhhCCCCCCEEEcCCCCCcccC-cccCCCCCCCeEccCCCcCC-----CcCCCCCCCCCCCcEEEccCCCCCCC-
Q 037604 230 ERFPEILEKMEHLKCINLDRTAITELP-SSFENLTGLKGLSVSDCSKL-----DKLPDNIGNLESLHHMSAFGSAISQL- 302 (540)
Q Consensus 230 ~~~~~~l~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~-----~~l~~~~~~l~~L~~L~l~~~~l~~l- 302 (540)
..-...|.. .+|+.+.+. +.++.++ ..|..+++|+.+.+.++... ..-+..|..+++|+.+.+.. .++.+
T Consensus 239 ~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~ 315 (401)
T 4fdw_A 239 TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG 315 (401)
T ss_dssp EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence 212233444 567777663 3345443 34666777777777654432 22334567777777777763 35555
Q ss_pred CccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCC-hhhcCCC-CCcEEEecCCCCc
Q 037604 303 PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIP-QEIARLS-SLIDLHIGGNNFQ 370 (540)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~l~-~L~~L~l~~~~l~ 370 (540)
...|.++++|+.+.+..+ ....-..+|.++ +|+.+++.++....++ ..+..++ +++.+.+..+.+.
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 345666777787777544 333334567777 8888888888776643 3345553 6788888776544
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=9.5e-11 Score=102.27 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=81.1
Q ss_pred cEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChh-hcCCCCCcEEEecCCC
Q 037604 290 HHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQE-IARLSSLIDLHIGGNN 368 (540)
Q Consensus 290 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 368 (540)
+.++++++.++.+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|.+..+|.. +..+++|+.|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 577888888888877654 7788888888887777777788888888888888888887665 4778888888888888
Q ss_pred Ccccchh-ccCCCCCCEEEecCCCCC
Q 037604 369 FQSLPAS-IKQLSQLSSLELNDCKML 393 (540)
Q Consensus 369 l~~lp~~-l~~l~~L~~L~l~~~~~~ 393 (540)
++.+|.. +..+++|+.|++++|++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 8887765 777888888888888644
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=1.3e-10 Score=101.04 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=79.2
Q ss_pred CcEEEccCCCCCCCCccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCChh-hcCCCCCcEEEecCC
Q 037604 289 LHHMSAFGSAISQLPSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIPQE-IARLSSLIDLHIGGN 367 (540)
Q Consensus 289 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 367 (540)
.+.++++++.++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+..++.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677788888877776553 6778888888887777777778888888888888888886654 477888888888888
Q ss_pred CCcccchh-ccCCCCCCEEEecCCCCC
Q 037604 368 NFQSLPAS-IKQLSQLSSLELNDCKML 393 (540)
Q Consensus 368 ~l~~lp~~-l~~l~~L~~L~l~~~~~~ 393 (540)
+++.+|.. +..+++|++|++++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88877753 677888888888888654
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=3.7e-10 Score=98.51 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=52.9
Q ss_pred CEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCcc-ccCCCCccEEEccCCC
Q 037604 243 KCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSS-VADSNVLGILDFSRCK 321 (540)
Q Consensus 243 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~ 321 (540)
+.++++++.++.+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|.++++|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666665443 5666666666666555555566666666666666666655432 2344444444444444
Q ss_pred CCCcccccccCCCCCcEEeccCCCC
Q 037604 322 GLESFPRSLLGLSSLVALHIRNFAV 346 (540)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (540)
+.+..+..+..+++|++|++++|.+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred cceeCHHHhccccCCCEEEeCCCCc
Confidence 3332222233344444444444433
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=3.3e-10 Score=98.50 Aligned_cols=78 Identities=14% Similarity=0.197 Sum_probs=39.7
Q ss_pred CEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCCCcc-ccCCCCccEEEccCCC
Q 037604 243 KCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQLPSS-VADSNVLGILDFSRCK 321 (540)
Q Consensus 243 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~ 321 (540)
+.++++++.++.+|..+. ++++.|++++|.+.+..|..+..+++|++|++++|.++.++.. +..+++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 456666666666555432 4555555555555554455555555555555555555554332 2334444444444443
Q ss_pred C
Q 037604 322 G 322 (540)
Q Consensus 322 ~ 322 (540)
+
T Consensus 90 l 90 (170)
T 3g39_A 90 L 90 (170)
T ss_dssp C
T ss_pred c
Confidence 3
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.13 E-value=4.8e-09 Score=104.50 Aligned_cols=317 Identities=10% Similarity=0.038 Sum_probs=167.9
Q ss_pred CceEEEEeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCC-CCCccccCcEEEeecC
Q 037604 3 DAIEGIFLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPN-GLDYLPEKLRYLHWDT 81 (540)
Q Consensus 3 ~~~~~i~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~L~l~~ 81 (540)
.+++.|.+. . .+..+...+|.++++|+.+++..+ + ..+.. .+... .+|+.+.+..
T Consensus 71 ~~L~~i~lp--~-~i~~I~~~aF~~c~~L~~i~lp~~-l-------------------~~I~~~aF~~c-~~L~~i~~p~ 126 (394)
T 4fs7_A 71 RKVTEIKIP--S-TVREIGEFAFENCSKLEIINIPDS-V-------------------KMIGRCTFSGC-YALKSILLPL 126 (394)
T ss_dssp TTEEEEECC--T-TCCEECTTTTTTCTTCCEECCCTT-C-------------------CEECTTTTTTC-TTCCCCCCCT
T ss_pred CCceEEEeC--C-CccCcchhHhhCCCCCcEEEeCCC-c-------------------eEccchhhccc-ccchhhcccC
Confidence 356666664 2 367899999999999999999755 3 23333 34444 3666665543
Q ss_pred CCCCCCCCC-C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCC
Q 037604 82 YPLRILPSN-F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYC 158 (540)
Q Consensus 82 ~~l~~l~~~-~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~ 158 (540)
+ +..+... + .+..++....... ..+ -..+|.++++|+.+.+..+ ....-...+ .+.+|+.+++..+
T Consensus 127 ~-l~~i~~~aF~~~~~~~~~~~~~~--~~i-------~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 127 M-LKSIGVEAFKGCDFKEITIPEGV--TVI-------GDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp T-CCEECTTTTTTCCCSEEECCTTC--CEE-------CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred c-eeeecceeeecccccccccCccc--ccc-------chhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC
Confidence 3 3333332 2 3333333222221 111 1245778888888888753 222223334 6777777777543
Q ss_pred cCccccCCCCCCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCchhhhC
Q 037604 159 VNLIEFPQISGKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEK 238 (540)
Q Consensus 159 ~~~~~~~~~~~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 238 (540)
- ..+. ...+.++..|+.+.+..+. ..+...+.....|+.+.+... ....-...+..
T Consensus 196 ~--~~I~-------------------~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~ 251 (394)
T 4fs7_A 196 L--KIIR-------------------DYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDS-FTELGKSVFYG 251 (394)
T ss_dssp C--CEEC-------------------TTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTT-CCEECSSTTTT
T ss_pred c--eEeC-------------------chhhccccccceeecCCCc--eEeehhhcccCCCceEEECCC-ceecccccccc
Confidence 1 1111 1123344444444444321 112222333445555555431 11111234455
Q ss_pred CCCCCEEEcCCCCCcccCcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC-CccccCCCCccEEEc
Q 037604 239 MEHLKCINLDRTAITELPSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL-PSSVADSNVLGILDF 317 (540)
Q Consensus 239 l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l 317 (540)
+..++.+.+..+...--...+..+..++.+......+ ....+..+.+|+.+.+..+ ++.+ ...|.++.+|+.+++
T Consensus 252 ~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~l 327 (394)
T 4fs7_A 252 CTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDL 327 (394)
T ss_dssp CSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECC
T ss_pred cccceeEEcCCCcceeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEe
Confidence 5666666665543332223355555666555544221 1124556666666666543 3333 334666677777777
Q ss_pred cCCCCCCcccccccCCCCCcEEeccCCCCCCC-ChhhcCCCCCcEEEecCCCCcccchhccCCCCCCEE
Q 037604 318 SRCKGLESFPRSLLGLSSLVALHIRNFAVMEI-PQEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSL 385 (540)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 385 (540)
..+ ....-..+|.+|.+|+.+.+..+ +..+ ..++..+++|+.+++..+ ++.+...+.++++|+.+
T Consensus 328 p~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 328 PYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred CCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 533 22222345777888888888665 4443 345778888888888654 44555567777777765
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.98 E-value=4.6e-11 Score=117.63 Aligned_cols=84 Identities=13% Similarity=0.066 Sum_probs=35.9
Q ss_pred CCCCEEEcccCcccc----ccchhcCCCCCCcEEeccCCcCCCc----CchhhhCCCCCCEEEcCCCCCcc-----cCcc
Q 037604 192 TDLEVLDLMYCKRLK----RISTRFCKLRSLVDLCLNGCLNLER----FPEILEKMEHLKCINLDRTAITE-----LPSS 258 (540)
Q Consensus 192 ~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~-----l~~~ 258 (540)
++|++|++++|.+.. .++..+..+++|++|++++|.+... ++..+...++|+.|++++|.++. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 444555555444322 1222233444455555555443221 12333444455555555555441 2222
Q ss_pred cCCCCCCCeEccCCCcC
Q 037604 259 FENLTGLKGLSVSDCSK 275 (540)
Q Consensus 259 ~~~l~~L~~L~l~~~~~ 275 (540)
+...++|++|++++|.+
T Consensus 235 L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 235 AREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHCSSCCEEECTTSSC
T ss_pred HHhCCCCCEEeccCCCC
Confidence 33344555555555543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.94 E-value=2.7e-11 Score=119.27 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=50.9
Q ss_pred CCccEEEccCCCCCC----cccccccCCCCCcEEeccCCCCCC-----CChhhcCCCCCcEEEecCCCCcc-----cchh
Q 037604 310 NVLGILDFSRCKGLE----SFPRSLLGLSSLVALHIRNFAVME-----IPQEIARLSSLIDLHIGGNNFQS-----LPAS 375 (540)
Q Consensus 310 ~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~l~~-----lp~~ 375 (540)
++|++|++++|.+.. .++..+..+++|++|++++|.+.+ +...+...++|+.|++++|.++. +...
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 455555555555432 123334556667777777776654 23445566677777777777762 3344
Q ss_pred ccCCCCCCEEEecCCCCC
Q 037604 376 IKQLSQLSSLELNDCKML 393 (540)
Q Consensus 376 l~~l~~L~~L~l~~~~~~ 393 (540)
+...++|++|++++|.+.
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 556677888888887644
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.91 E-value=2.6e-07 Score=91.86 Aligned_cols=314 Identities=13% Similarity=0.126 Sum_probs=168.3
Q ss_pred ccccCchhhhccc-cCceeeeeccccccchhhhccchhhhhccccccc-CCCCCccccCcEEEeecCCC---CCCCCCC-
Q 037604 17 GINLDPGTFTNMS-NMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQL-PNGLDYLPEKLRYLHWDTYP---LRILPSN- 90 (540)
Q Consensus 17 ~~~~~~~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~L~l~~~~---l~~l~~~- 90 (540)
++.|...||.+++ .|+...+..+ + ..+ ..+|... .+|+.+.+..+. ++.|...
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-v-------------------t~Ig~~AF~~C-~~L~~i~~~~n~p~~l~~Ig~~a 109 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-V-------------------TEIGSNAFYNC-TSLKRVTIQDNKPSCVKKIGRQA 109 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-C-------------------CEECTTTTTTC-TTCCEEEEGGGCCCCCCEECTTT
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-e-------------------eEEhHHHhhCC-ccCceEeecCCCCCeeeEechhh
Confidence 5677788898885 5888888654 3 233 3456666 488888888763 5666554
Q ss_pred C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCCCC-ccCCCcEEEccCCcCccccCCCC
Q 037604 91 F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPSNL-HFVCPVTIDFSYCVNLIEFPQIS 168 (540)
Q Consensus 91 ~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~ 168 (540)
+ .+.+|+.+.+..+ ++.+ -..+|..+.+|+.+.+.. .....-...+ .+..|+.+.+..+-
T Consensus 110 F~~c~~L~~i~~~~~-~~~I-------~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~~--------- 171 (394)
T 4gt6_A 110 FMFCSELTDIPILDS-VTEI-------DSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDSV--------- 171 (394)
T ss_dssp TTTCTTCCBCGGGTT-CSEE-------CTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTC---------
T ss_pred chhcccceeeccCCc-ccee-------hhhhhhhhcccccccccc-eeeeecccceeccccccccccccee---------
Confidence 3 6778887777543 3332 224577888888888864 2222223334 77778777775431
Q ss_pred CCeeEEEcccCCceeccccccCCCCCCEEEcccCccccccchhcCCCCCCcEEeccCCcCCCcCch--------------
Q 037604 169 GKITRLYLGCSAIEEVPSSIECLTDLEVLDLMYCKRLKRISTRFCKLRSLVDLCLNGCLNLERFPE-------------- 234 (540)
Q Consensus 169 ~~l~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-------------- 234 (540)
+.+........+|+.+.+... ....-...|..+.+++........... ...
T Consensus 172 -------------~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 236 (394)
T 4gt6_A 172 -------------TAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALI 236 (394)
T ss_dssp -------------CEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEE
T ss_pred -------------eEeccccccccceeEEEECCc-ccccccchhhhccccceeccccccccc-ccceeeccccccccccc
Confidence 112211112234444444432 111112234444444444433211110 000
Q ss_pred hhhCCCCCCEEEcCCCCCccc-CcccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCcEEEccCCCCCCC-CccccCCCCc
Q 037604 235 ILEKMEHLKCINLDRTAITEL-PSSFENLTGLKGLSVSDCSKLDKLPDNIGNLESLHHMSAFGSAISQL-PSSVADSNVL 312 (540)
Q Consensus 235 ~l~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L 312 (540)
.......+..+.+.. .++.+ ...|..+.+|+.+.+... ....-...|.++++|+.+.+. +.++.+ ...|.++.+|
T Consensus 237 ~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L 313 (394)
T 4gt6_A 237 RYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISL 313 (394)
T ss_dssp ECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTC
T ss_pred ccccccccceEEcCC-cceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCc
Confidence 001112233333221 12222 123666777777777542 222233456677778877775 344444 3446677888
Q ss_pred cEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCCC-hhhcCCCCCcEEEecCCCCcccchhccCCCCCCEEEecCCC
Q 037604 313 GILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEIP-QEIARLSSLIDLHIGGNNFQSLPASIKQLSQLSSLELNDCK 391 (540)
Q Consensus 313 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~ 391 (540)
+.+.+..+ ....-..+|.+|.+|+.+.+..+ ++.+. ..|.++++|+.+++.++... + ..+..+.+|+.+.+..+.
T Consensus 314 ~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 314 KSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC---------
T ss_pred CEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCC
Confidence 88887653 22222346788889999988654 55543 46788899999999887532 1 345667788888776553
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=9.1e-09 Score=100.65 Aligned_cols=103 Identities=16% Similarity=0.030 Sum_probs=78.8
Q ss_pred EEcccC-CceeccccccCCCCCCEEEccc-CccccccchhcCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCC
Q 037604 174 LYLGCS-AIEEVPSSIECLTDLEVLDLMY-CKRLKRISTRFCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTA 251 (540)
Q Consensus 174 L~L~~~-~l~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 251 (540)
++.+++ .++.+|. +..+++|+.|+|++ |.+.+..+..|.++++|++|++++|.+.+..|..|..+++|+.|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 6777888 88888888888885 77666666678888888888888888777777788888888888888888
Q ss_pred CcccCcccCCCCCCCeEccCCCcCCC
Q 037604 252 ITELPSSFENLTGLKGLSVSDCSKLD 277 (540)
Q Consensus 252 l~~l~~~~~~l~~L~~L~l~~~~~~~ 277 (540)
++.+|..+.....|+.|++.+|.+..
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCccC
Confidence 88887654443348888888776553
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.84 E-value=1.1e-08 Score=100.10 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=77.9
Q ss_pred eEccCCCcCCCcCCCCCCCCCCCcEEEccC-CCCCCCC-ccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCC
Q 037604 267 GLSVSDCSKLDKLPDNIGNLESLHHMSAFG-SAISQLP-SSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNF 344 (540)
Q Consensus 267 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~-~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 344 (540)
.++.++++....+|. +..+++|+.|++++ |.++.++ ..+..+++|+.|++++|.+.+..+..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456666524445777 88888888888885 8888875 46788888888888888887777777888888888888888
Q ss_pred CCCCCChhhcCCCCCcEEEecCCCCc
Q 037604 345 AVMEIPQEIARLSSLIDLHIGGNNFQ 370 (540)
Q Consensus 345 ~~~~~~~~~~~l~~L~~L~l~~~~l~ 370 (540)
.+..+|........|+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 88887765444334888888888876
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.81 E-value=6.6e-07 Score=88.95 Aligned_cols=122 Identities=8% Similarity=0.098 Sum_probs=69.0
Q ss_pred eEEEEeecCcccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccCC-CCCccccCcEEEeecCCC
Q 037604 5 IEGIFLDLSKIKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLPN-GLDYLPEKLRYLHWDTYP 83 (540)
Q Consensus 5 ~~~i~L~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~L~l~~~~ 83 (540)
++.|.+. . .+..|...||.++++|+.+.+..|.-+.+ ..+.. +|... .+|+.+.+..+
T Consensus 66 L~sI~iP--~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l----------------~~Ig~~aF~~c-~~L~~i~~~~~- 124 (394)
T 4gt6_A 66 LTSVQIP--D-TVTEIGSNAFYNCTSLKRVTIQDNKPSCV----------------KKIGRQAFMFC-SELTDIPILDS- 124 (394)
T ss_dssp CCEEEEC--T-TCCEECTTTTTTCTTCCEEEEGGGCCCCC----------------CEECTTTTTTC-TTCCBCGGGTT-
T ss_pred CEEEEEC--C-CeeEEhHHHhhCCccCceEeecCCCCCee----------------eEechhhchhc-ccceeeccCCc-
Confidence 4445443 2 26788899999999999999987642211 22322 33333 35665555433
Q ss_pred CCCCCCC-C-CCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCCCcccCC-CCccCCCcEEEccC
Q 037604 84 LRILPSN-F-KPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKSLRSFPS-NLHFVCPVTIDFSY 157 (540)
Q Consensus 84 l~~l~~~-~-~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~ 157 (540)
++.++.. + .+.+|+.+.+..+ +..+ -...|..+..|+.+.+..+ . ..+.. .+....|+.+.+..
T Consensus 125 ~~~I~~~aF~~c~~L~~i~lp~~-~~~I-------~~~~F~~c~~L~~i~~~~~-~-~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 125 VTEIDSEAFHHCEELDTVTIPEG-VTSV-------ADGMFSYCYSLHTVTLPDS-V-TAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp CSEECTTTTTTCTTCCEEECCTT-CCEE-------CTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCCCSEEEECT
T ss_pred cceehhhhhhhhcccccccccce-eeee-------cccceecccccccccccce-e-eEeccccccccceeEEEECC
Confidence 4444443 2 6777777777543 2222 1234667777777777642 2 23332 23445666666654
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.75 E-value=1.8e-06 Score=85.29 Aligned_cols=103 Identities=19% Similarity=0.143 Sum_probs=43.5
Q ss_pred cCCCCCCcEEeccCCcCCCcCchhhhCCCCCCEEEcCCCCCcccCc-ccCCCCCCCeEccCCCcCCCcCCCCCCCCCCCc
Q 037604 212 FCKLRSLVDLCLNGCLNLERFPEILEKMEHLKCINLDRTAITELPS-SFENLTGLKGLSVSDCSKLDKLPDNIGNLESLH 290 (540)
Q Consensus 212 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 290 (540)
+..+.+|+.+.+... ....-...+..+..|+.+.+..+ ++.+.. .+..+.+|+.+.+.. .....-...|..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 444555555555431 11112233445555555555433 333322 244455555555533 11111122344455555
Q ss_pred EEEccCCCCCCC-CccccCCCCccEEEc
Q 037604 291 HMSAFGSAISQL-PSSVADSNVLGILDF 317 (540)
Q Consensus 291 ~L~l~~~~l~~l-~~~~~~l~~L~~L~l 317 (540)
.+.+.++.++.+ ...|.++.+|+.+.+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccceehhhhhcCCCCCCEEEc
Confidence 555544444443 223444444444444
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=7.8e-09 Score=100.83 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=33.9
Q ss_pred CCCCCcEEeccCCCCCC-CChhh---cCCCCCcEEEecCCCCcc-----cchhccCCCCCCEEEecCCCC
Q 037604 332 GLSSLVALHIRNFAVME-IPQEI---ARLSSLIDLHIGGNNFQS-----LPASIKQLSQLSSLELNDCKM 392 (540)
Q Consensus 332 ~~~~L~~L~l~~~~~~~-~~~~~---~~l~~L~~L~l~~~~l~~-----lp~~l~~l~~L~~L~l~~~~~ 392 (540)
.+++|++|++.+|.+.+ .+..+ ..+++|+.|+++.|.++. ++..+..+++|+.|++++|.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 35666666666666553 11111 235667777776666652 333334556677777776653
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.48 E-value=4.9e-08 Score=95.16 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=18.0
Q ss_pred CCCCCeEccCCCcCCCc----CCCCCCCCCCCcEEEccCCCCC
Q 037604 262 LTGLKGLSVSDCSKLDK----LPDNIGNLESLHHMSAFGSAIS 300 (540)
Q Consensus 262 l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~l~ 300 (540)
+++|++|+++.|.+... ++..+..+++|+.|++++|.++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 44555555554443321 2222234455555555555544
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.47 E-value=5.1e-05 Score=74.76 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=56.5
Q ss_pred CCCCCCCCcEEEccCCCCCCC-CccccCCCCccEEEccCCCCCCcccccccCCCCCcEEeccCCCCCCC-ChhhcCCCCC
Q 037604 282 NIGNLESLHHMSAFGSAISQL-PSSVADSNVLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFAVMEI-PQEIARLSSL 359 (540)
Q Consensus 282 ~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L 359 (540)
.+..+.+|+.+.+..+ +..+ ...+..+..|+.+.+..+ ....-..++.++.+|+.+.+..+ +..+ ...+..+++|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3445555666555433 2222 233455566666666443 12222234556666777666533 3332 2345667777
Q ss_pred cEEEecCCCCcccc-hhccCCCCCCEEEecC
Q 037604 360 IDLHIGGNNFQSLP-ASIKQLSQLSSLELND 389 (540)
Q Consensus 360 ~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~ 389 (540)
+.+.+.++.++.++ ..+.++.+|+.+.+..
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 77777766666654 3456677777777643
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.20 E-value=3.8e-07 Score=80.11 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=29.7
Q ss_pred CCCCCcEEeccCCCCCC-----CChhhcCCCCCcEEEe--cCCCCc-----ccchhccCCCCCCEEEecCCC
Q 037604 332 GLSSLVALHIRNFAVME-----IPQEIARLSSLIDLHI--GGNNFQ-----SLPASIKQLSQLSSLELNDCK 391 (540)
Q Consensus 332 ~~~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l--~~~~l~-----~lp~~l~~l~~L~~L~l~~~~ 391 (540)
..++|++|++++|.+.+ +...+...++|++|++ ++|.++ .+...+...++|++|++++|.
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 34455555555555544 2333444455555555 555554 123334444555666555554
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=4.4e-06 Score=71.46 Aligned_cols=84 Identities=12% Similarity=0.147 Sum_probs=46.7
Q ss_pred CccEEEccCCCCCCcccccccCCCCCcEEeccCCC-CCC-CChhhcCC----CCCcEEEecCCC-Ccc-cchhccCCCCC
Q 037604 311 VLGILDFSRCKGLESFPRSLLGLSSLVALHIRNFA-VME-IPQEIARL----SSLIDLHIGGNN-FQS-LPASIKQLSQL 382 (540)
Q Consensus 311 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~l----~~L~~L~l~~~~-l~~-lp~~l~~l~~L 382 (540)
.|++|++++|.++..-...+.++++|++|++++|. +++ .-..+..+ ++|++|++++|. +++ --..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666665444433445566666666666664 444 22223332 357777777764 552 11234556777
Q ss_pred CEEEecCCCCCC
Q 037604 383 SSLELNDCKMLQ 394 (540)
Q Consensus 383 ~~L~l~~~~~~~ 394 (540)
++|++++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 777777776544
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.05 E-value=1.3e-06 Score=76.69 Aligned_cols=88 Identities=10% Similarity=0.090 Sum_probs=59.1
Q ss_pred ccCCCCccEEEccCC-CCCCc----ccccccCCCCCcEEeccCCCCCC-----CChhhcCCCCCcEEEecCCCCcc----
Q 037604 306 VADSNVLGILDFSRC-KGLES----FPRSLLGLSSLVALHIRNFAVME-----IPQEIARLSSLIDLHIGGNNFQS---- 371 (540)
Q Consensus 306 ~~~l~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~l~~---- 371 (540)
+...++|++|++++| .+... +...+...++|++|++++|.+.+ +...+...++|++|++++|.++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344566777777776 54332 33345667788888888888765 34445566788888888888762
Q ss_pred -cchhccCCCCCCEEEe--cCCCCC
Q 037604 372 -LPASIKQLSQLSSLEL--NDCKML 393 (540)
Q Consensus 372 -lp~~l~~l~~L~~L~l--~~~~~~ 393 (540)
+...+...++|++|++ ++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCC
Confidence 4556667778888888 667643
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=2.2e-05 Score=67.10 Aligned_cols=59 Identities=12% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCcEEeccCCCCCC-CChhhcCCCCCcEEEecCCC-Cccc-chhccCC----CCCCEEEecCCCCC
Q 037604 335 SLVALHIRNFAVME-IPQEIARLSSLIDLHIGGNN-FQSL-PASIKQL----SQLSSLELNDCKML 393 (540)
Q Consensus 335 ~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~-l~~l-p~~l~~l----~~L~~L~l~~~~~~ 393 (540)
.|++|++++|.+++ -...+..+++|++|+|++|. +++- -..+..+ ++|++|++++|..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 46666666666554 22334556666666666664 4421 1122222 34555555555433
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=5.5e-05 Score=69.74 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=5.4
Q ss_pred CCcEEEecCCCC
Q 037604 358 SLIDLHIGGNNF 369 (540)
Q Consensus 358 ~L~~L~l~~~~l 369 (540)
+|++|++++|.+
T Consensus 221 ~L~~L~L~~Npl 232 (267)
T 3rw6_A 221 KLEELWLDGNSL 232 (267)
T ss_dssp CCSEEECTTSTT
T ss_pred CcceEEccCCcC
Confidence 444444444443
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.52 E-value=5.4e-05 Score=69.81 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=28.6
Q ss_pred CCCCcEEeccCCcCCC--cCchhhhCCCCCCEEEcCCCCCcccCcccCCCC--CCCeEccCCCcCCC
Q 037604 215 LRSLVDLCLNGCLNLE--RFPEILEKMEHLKCINLDRTAITELPSSFENLT--GLKGLSVSDCSKLD 277 (540)
Q Consensus 215 l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~l~--~L~~L~l~~~~~~~ 277 (540)
+++|+.|++++|.+.+ .++..+..+++|+.|++++|.++.+. .+..+. +|++|++++|++.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcc
Confidence 4455555555554443 23344445555555555555555331 122222 45555555544443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.56 E-value=0.00095 Score=58.11 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=6.0
Q ss_pred CCCcEEeccCCCCC
Q 037604 334 SSLVALHIRNFAVM 347 (540)
Q Consensus 334 ~~L~~L~l~~~~~~ 347 (540)
+.|++|+|++|.+.
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 34444444444443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.54 E-value=0.00099 Score=57.98 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=52.8
Q ss_pred CCCCccEEEccCC-CCCC----cccccccCCCCCcEEeccCCCCCC-----CChhhcCCCCCcEEEecCCCCc-----cc
Q 037604 308 DSNVLGILDFSRC-KGLE----SFPRSLLGLSSLVALHIRNFAVME-----IPQEIARLSSLIDLHIGGNNFQ-----SL 372 (540)
Q Consensus 308 ~l~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~l~-----~l 372 (540)
.-+.|++|+++++ .+.. .+.+.+..-+.|+.|++++|.+.+ +...+..-++|+.|+|++|.|+ .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456777777664 3322 133445566778888888887775 3344555677888888888876 33
Q ss_pred chhccCCCCCCEEEecCC
Q 037604 373 PASIKQLSQLSSLELNDC 390 (540)
Q Consensus 373 p~~l~~l~~L~~L~l~~~ 390 (540)
-..+..-+.|++|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 445555667888887754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.24 E-value=0.0059 Score=49.47 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=36.8
Q ss_pred EEeecCCCCC--CCCCCCCCCCceEeecCCcchhhhhccccCcCCCcccCCCCCCEEecCCCCC
Q 037604 76 YLHWDTYPLR--ILPSNFKPKNLVELNLRFSKVEQLWEGEKACVPSSIQNFKYLSMLNFEGCKS 137 (540)
Q Consensus 76 ~L~l~~~~l~--~l~~~~~~~~L~~L~Ls~n~i~~l~~g~~~~lp~~~~~l~~L~~L~L~~~~~ 137 (540)
+++.+++.++ .+|..+ ..+|++|+|++|.|+.+ -+..|..+++|++|+|++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l-------~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTAL-------PPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSC-------CTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCcc-------ChhhhhhccccCEEEecCCCe
Confidence 6677777777 777654 34577888888887764 334466777777777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.62 E-value=0.019 Score=46.42 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=34.8
Q ss_pred EEeccCCCCC--CCChhhcCCCCCcEEEecCCCCcccchh-ccCCCCCCEEEecCCC
Q 037604 338 ALHIRNFAVM--EIPQEIARLSSLIDLHIGGNNFQSLPAS-IKQLSQLSSLELNDCK 391 (540)
Q Consensus 338 ~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 391 (540)
.++.+++.++ .+|..+. ++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5666666666 5664322 3677788888877777653 4667777777777775
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.20 E-value=51 Score=24.46 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=34.5
Q ss_pred ccccccCchhhhccccCceeeeeccccccchhhhccchhhhhcccccccC-CCCCccccCcEEEeecCC
Q 037604 15 IKGINLDPGTFTNMSNMRLLKFYVPKFYGIERFLSMSIEEQLSYSKVQLP-NGLDYLPEKLRYLHWDTY 82 (540)
Q Consensus 15 ~~~~~~~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~L~l~~~ 82 (540)
..++.|...+|.++++|+.+.|..+- ..+- ..|... .+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v--------------------~~Ig~~aF~~C-~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI--------------------GLLYDGMFSGC-TALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS--------------------SCCCTTSSTTC-TTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch--------------------heEcHHHHhcc-CCccEEEEcCC
Confidence 34688999999999999999997653 2333 355556 47888887764
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.08 E-value=1.1e+02 Score=22.48 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=6.1
Q ss_pred CCCCCCCCcEEEcc
Q 037604 282 NIGNLESLHHMSAF 295 (540)
Q Consensus 282 ~~~~l~~L~~L~l~ 295 (540)
.|..+.+|+.+.+.
T Consensus 38 aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 38 MFSGCTALEKLILT 51 (100)
T ss_dssp SSTTCTTCCCEEEC
T ss_pred HHhccCCccEEEEc
Confidence 34444444444443
Done!