Query 037605
Match_columns 161
No_of_seqs 261 out of 1609
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 02:38:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 100.0 9.1E-43 2E-47 279.7 13.8 154 2-159 345-499 (499)
2 KOG0156 Cytochrome P450 CYP2 s 100.0 1.6E-41 3.4E-46 274.3 13.7 152 2-159 337-488 (489)
3 PLN03234 cytochrome P450 83B1; 100.0 6.7E-41 1.4E-45 272.6 14.4 157 2-158 339-498 (499)
4 PLN02183 ferulate 5-hydroxylas 100.0 1.1E-40 2.4E-45 272.5 14.2 157 2-159 355-512 (516)
5 PLN02966 cytochrome P450 83A1 100.0 3E-40 6.6E-45 269.1 14.6 158 2-159 342-500 (502)
6 PLN02971 tryptophan N-hydroxyl 100.0 3.5E-40 7.5E-45 271.1 14.4 154 2-158 378-533 (543)
7 PLN02394 trans-cinnamate 4-mon 100.0 5.5E-40 1.2E-44 267.5 14.4 156 2-159 344-502 (503)
8 PLN02169 fatty acid (omega-1)- 100.0 6.6E-40 1.4E-44 267.1 14.4 151 2-158 346-499 (500)
9 PLN00110 flavonoid 3',5'-hydro 100.0 9.1E-40 2E-44 266.5 14.0 155 2-159 340-497 (504)
10 PTZ00404 cytochrome P450; Prov 100.0 1.4E-39 3.1E-44 263.9 14.6 148 2-158 334-482 (482)
11 PLN02687 flavonoid 3'-monooxyg 100.0 1.5E-39 3.2E-44 266.0 14.4 158 2-159 348-509 (517)
12 PLN00168 Cytochrome P450; Prov 100.0 1.5E-39 3.2E-44 266.1 14.3 155 2-159 358-517 (519)
13 KOG0157 Cytochrome P450 CYP4/C 100.0 1.3E-39 2.7E-44 265.1 13.1 146 9-160 350-497 (497)
14 PF00067 p450: Cytochrome P450 100.0 9.1E-40 2E-44 259.4 9.7 127 3-129 314-440 (463)
15 PLN02426 cytochrome P450, fami 100.0 4.8E-39 1E-43 262.1 14.1 155 2-160 345-501 (502)
16 PLN02500 cytochrome P450 90B1 100.0 4.4E-39 9.6E-44 261.6 13.9 148 2-157 335-488 (490)
17 PLN02290 cytokinin trans-hydro 100.0 4.9E-39 1.1E-43 262.6 14.2 150 2-160 366-516 (516)
18 PLN02738 carotene beta-ring hy 100.0 7.5E-39 1.6E-43 266.5 15.2 153 2-159 441-595 (633)
19 PLN03195 fatty acid omega-hydr 100.0 4E-39 8.7E-44 263.2 13.2 152 2-159 363-516 (516)
20 KOG0159 Cytochrome P450 CYP11/ 100.0 2.8E-39 6E-44 256.6 11.6 152 2-160 368-519 (519)
21 PLN03112 cytochrome P450 famil 100.0 7.5E-39 1.6E-43 261.5 14.6 159 2-160 347-509 (514)
22 PLN02655 ent-kaurene oxidase 100.0 8.3E-39 1.8E-43 258.6 13.9 155 2-161 312-466 (466)
23 PLN02774 brassinosteroid-6-oxi 100.0 2.5E-38 5.4E-43 255.7 13.6 145 2-157 318-462 (463)
24 PLN03018 homomethionine N-hydr 100.0 4.8E-38 1E-42 257.8 15.3 155 2-159 365-524 (534)
25 PLN03141 3-epi-6-deoxocathaste 100.0 2.8E-38 6E-43 254.6 13.6 146 2-160 306-451 (452)
26 PLN02302 ent-kaurenoic acid ox 100.0 2.3E-37 4.9E-42 251.1 13.4 148 2-160 342-489 (490)
27 PLN02936 epsilon-ring hydroxyl 100.0 2.8E-37 6.1E-42 251.0 13.9 153 2-159 328-482 (489)
28 PLN02987 Cytochrome P450, fami 100.0 6.2E-37 1.3E-41 248.1 14.5 149 2-159 321-469 (472)
29 PLN02196 abscisic acid 8'-hydr 100.0 3.7E-37 8E-42 248.8 12.7 144 2-157 318-461 (463)
30 KOG0684 Cytochrome P450 [Secon 100.0 8E-36 1.7E-40 232.9 10.7 153 2-159 325-485 (486)
31 PLN02648 allene oxide synthase 100.0 3.8E-32 8.2E-37 220.3 11.2 124 2-129 325-462 (480)
32 COG2124 CypX Cytochrome P450 [ 100.0 2.6E-31 5.7E-36 212.0 11.4 131 11-158 280-410 (411)
33 PF09201 SRX: SRX; InterPro: 54.8 11 0.00024 25.8 2.1 23 100-122 19-41 (148)
34 PF08492 SRP72: SRP72 RNA-bind 53.0 10 0.00023 21.9 1.5 8 73-80 44-51 (59)
35 PF12508 DUF3714: Protein of u 47.6 19 0.00041 26.3 2.5 42 11-54 53-94 (200)
36 PF12444 Sox_N: Sox developmen 47.3 12 0.00027 23.3 1.3 20 109-128 60-79 (84)
37 PF11138 DUF2911: Protein of u 46.0 33 0.00071 23.7 3.4 22 35-56 52-73 (145)
38 PRK06789 flagellar motor switc 45.9 24 0.00052 21.4 2.4 40 16-55 21-62 (74)
39 cd00652 TBP_TLF TATA box bindi 45.9 16 0.00035 25.9 1.9 57 70-126 29-87 (174)
40 COG1759 5-formaminoimidazole-4 43.5 60 0.0013 25.7 4.7 69 14-115 276-351 (361)
41 PF15300 INT_SG_DDX_CT_C: INTS 40.0 20 0.00043 21.2 1.3 15 10-24 40-54 (65)
42 cd04516 TBP_eukaryotes eukaryo 39.9 16 0.00034 26.1 1.1 56 70-125 29-86 (174)
43 COG2101 SPT15 TATA-box binding 39.6 10 0.00022 27.1 0.0 36 70-105 35-70 (185)
44 KOG3506 40S ribosomal protein 38.8 14 0.00031 20.9 0.6 10 93-102 13-22 (56)
45 PF14550 Peptidase_U35_2: Puta 38.1 24 0.00052 23.6 1.7 22 34-55 72-93 (122)
46 cd04518 TBP_archaea archaeal T 37.9 9.3 0.0002 27.2 -0.3 35 70-104 29-63 (174)
47 KOG3302 TATA-box binding prote 37.2 12 0.00025 27.2 0.1 56 70-125 50-116 (200)
48 PLN00062 TATA-box-binding prot 37.1 24 0.00053 25.3 1.7 55 70-124 29-85 (179)
49 PF00352 TBP: Transcription fa 33.9 18 0.0004 22.3 0.6 34 71-104 32-65 (86)
50 PRK14759 potassium-transportin 33.2 18 0.00039 17.7 0.4 6 72-77 24-29 (29)
51 PF11227 DUF3025: Protein of u 33.1 27 0.00058 25.8 1.4 19 58-76 193-211 (212)
52 PRK00394 transcription factor; 29.7 16 0.00035 26.1 -0.2 34 70-103 28-61 (179)
53 PF02663 FmdE: FmdE, Molybdenu 22.8 81 0.0017 21.0 2.2 22 99-120 5-26 (131)
54 PRK05933 type III secretion sy 22.6 89 0.0019 24.8 2.7 43 13-55 317-362 (372)
55 PHA03162 hypothetical protein; 21.1 61 0.0013 22.0 1.3 24 95-118 2-25 (135)
56 TIGR03779 Bac_Flav_CT_M Bacter 20.8 79 0.0017 25.9 2.1 43 11-55 256-298 (410)
57 TIGR02115 potass_kdpF K+-trans 20.2 26 0.00056 16.7 -0.4 7 72-78 19-25 (26)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.1e-43 Score=279.74 Aligned_cols=154 Identities=35% Similarity=0.548 Sum_probs=137.0
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceec-cEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVN-GFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGS 80 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~-g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~ 80 (161)
+|+|.+.+|+||++||+||||+||+++.. .|.+++|.+++ ++.|+||+.|.++.+++||||++|+||++|+||||.++
T Consensus 345 ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~-~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~ 423 (499)
T KOG0158|consen 345 LTYDSLSKLKYLDMVIKETLRLYPPAPFL-NRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEE 423 (499)
T ss_pred CCHHHHhCCcHHHHHHHHHHhhCCCcccc-cceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCC
Confidence 68999999999999999999999999995 89999999999 99999999999999999999999999999999999987
Q ss_pred CCCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecC
Q 037605 81 SIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRL 159 (161)
Q Consensus 81 ~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 159 (161)
+.+ ..++..|+|||.|||+|+|++||++|+|++|+.||++|+++..+. +... ......++++.|+.++.+++.+|.
T Consensus 424 ~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~-t~~~-~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 424 NNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPT-TIIP-LEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred ccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCc-ccCc-ccCCccceeeecCCceEEEEEeCC
Confidence 654 456789999999999999999999999999999999999998763 2222 222223677788999999999884
No 2
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-41 Score=274.31 Aligned_cols=152 Identities=54% Similarity=0.937 Sum_probs=136.6
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+|+.+||||+|+|+|++|++|++|+.++|.+++|+.++||.|||||.|+++.|++||||++|+||++|+||||++++
T Consensus 337 v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~ 416 (489)
T KOG0156|consen 337 VSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN 416 (489)
T ss_pred CChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecC
Q 037605 82 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRL 159 (161)
Q Consensus 82 ~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 159 (161)
+.......++|||.|+|.|+|+.+|++++.++++.|+++|+|+++.+ .+++.+.. +....+.++.+...+|.
T Consensus 417 -d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~----~~d~~e~~-~~~~~~~pl~~~~~~r~ 488 (489)
T KOG0156|consen 417 -DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG----KVDMEEAG-LTLKKKKPLKAVPVPRL 488 (489)
T ss_pred -cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC----CCCCcccc-cceecCCcceeeeecCC
Confidence 22235678999999999999999999999999999999999999866 34455443 66677788888888875
No 3
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=6.7e-41 Score=272.62 Aligned_cols=157 Identities=43% Similarity=0.871 Sum_probs=138.1
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCC-CCCCCccCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESW-SDPEIFFPERFVGS 80 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~~~~ 80 (161)
++++++++|||++|||+|+||++|+++....|.+.+|.+++|+.||||+.|.++.+.+|||+++| +||++|+||||+++
T Consensus 339 ~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~ 418 (499)
T PLN03234 339 VSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKE 418 (499)
T ss_pred CCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCC
Confidence 57889999999999999999999999987579999999999999999999999999999999999 89999999999975
Q ss_pred CCC--CCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeec
Q 037605 81 SID--LRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYR 158 (161)
Q Consensus 81 ~~~--~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 158 (161)
... ....+..++|||.|+|+|+|+++|++|++++++.|+++|+|+++++..++.+.....+++..+++.++.+.+++|
T Consensus 419 ~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 419 HKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred CCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 432 123456799999999999999999999999999999999999987654455566666788888888888888876
No 4
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=1.1e-40 Score=272.52 Aligned_cols=157 Identities=57% Similarity=1.131 Sum_probs=135.3
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+++++|||++|||+|+||++|+++.. .|.+.+|++++|+.||||+.|.++.+++|||+++|+||++|+||||++++
T Consensus 355 ~~~~~l~~L~yl~avi~EtlRl~p~~p~~-~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~ 433 (516)
T PLN02183 355 VEESDLEKLTYLKCTLKETLRLHPPIPLL-LHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPG 433 (516)
T ss_pred CCHHHhccChHHHHHHHHHhccCCCccce-eeeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCC
Confidence 57789999999999999999999999997 69999999999999999999999999999999999999999999999754
Q ss_pred CC-CCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecC
Q 037605 82 ID-LRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRL 159 (161)
Q Consensus 82 ~~-~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 159 (161)
.. ...+...|+|||.|+|+|+|++||++|+++++|.|+++|++++.++......+....++...++..++++.+++|.
T Consensus 434 ~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 512 (516)
T PLN02183 434 VPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYRL 512 (516)
T ss_pred CccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecCC
Confidence 32 1224567999999999999999999999999999999999998776432334444455655566778999999884
No 5
>PLN02966 cytochrome P450 83A1
Probab=100.00 E-value=3e-40 Score=269.11 Aligned_cols=158 Identities=42% Similarity=0.848 Sum_probs=134.7
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCC-CCCCCccCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESW-SDPEIFFPERFVGS 80 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~~~~ 80 (161)
++.+++++||||+|||+|+||++|+++...+|.+.+|++++|+.||+||.|.++.+++||||++| +||++|+||||+++
T Consensus 342 ~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~ 421 (502)
T PLN02966 342 VTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEK 421 (502)
T ss_pred CCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCC
Confidence 46789999999999999999999999986689999999999999999999999999999999999 99999999999975
Q ss_pred CCCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecC
Q 037605 81 SIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRL 159 (161)
Q Consensus 81 ~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 159 (161)
+......+..++|||.|+|+|+|++||++|++++++.|+++|+|++.++...+.++.+...+++..++.+++++.++-+
T Consensus 422 ~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (502)
T PLN02966 422 EVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLVPEKVN 500 (502)
T ss_pred CCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCCCcccCCcccccCeeeccCCCeEEEEEeCC
Confidence 4322234567999999999999999999999999999999999999876544445555556666644557776666543
No 6
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=3.5e-40 Score=271.05 Aligned_cols=154 Identities=36% Similarity=0.726 Sum_probs=132.7
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++++++.+|||++|||+|+||++|+++...+|.+.+|++++||.||||+.|+++.+++|||+++|+||++|+||||++++
T Consensus 378 ~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~ 457 (543)
T PLN02971 378 VQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNEC 457 (543)
T ss_pred CCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCC
Confidence 57899999999999999999999999986689999999999999999999999999999999999999999999999754
Q ss_pred CC--CCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeec
Q 037605 82 ID--LRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYR 158 (161)
Q Consensus 82 ~~--~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 158 (161)
.+ ....+..|+|||.|+|.|+|++||++|++++++.|+++|+|+++++. ...++.+.++ ....+.++.+.+++|
T Consensus 458 ~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~ 533 (543)
T PLN02971 458 SEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSE--TRVELMESSH-DMFLSKPLVMVGELR 533 (543)
T ss_pred ccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCC--CCcchhhhcC-cccccccceeeeeec
Confidence 22 11245679999999999999999999999999999999999987652 2355555555 443455777877777
No 7
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=5.5e-40 Score=267.47 Aligned_cols=156 Identities=42% Similarity=0.765 Sum_probs=132.2
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+++++||||+|||+|+||++|+++...+|.+.+|++++|+.||+||.|.++.+++|||+++|+||++|+||||++++
T Consensus 344 ~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~ 423 (503)
T PLN02394 344 VTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEE 423 (503)
T ss_pred CCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCC
Confidence 46778899999999999999999999998779999999999999999999999999999999999999999999998754
Q ss_pred CC--CCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceee-eeccCCcceEEEeeec
Q 037605 82 ID--LRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFS-LVTPKAKHLLAIPSYR 158 (161)
Q Consensus 82 ~~--~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r 158 (161)
.. .......++|||.|+|+|+|++||++|+++++|.|+++|++++.++. +.++..+.++ +....+.++++.+.+|
T Consensus 424 ~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r 501 (503)
T PLN02394 424 AKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQ--SKIDVSEKGGQFSLHIAKHSTVVFKPR 501 (503)
T ss_pred CcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCC--CcCccccccCceeeccCCCceEEeecC
Confidence 32 12235679999999999999999999999999999999999987663 1244443443 4443456888888888
Q ss_pred C
Q 037605 159 L 159 (161)
Q Consensus 159 ~ 159 (161)
+
T Consensus 502 ~ 502 (503)
T PLN02394 502 S 502 (503)
T ss_pred C
Confidence 6
No 8
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00 E-value=6.6e-40 Score=267.10 Aligned_cols=151 Identities=25% Similarity=0.486 Sum_probs=128.5
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCce-eccEEcCCCcEEEeechhhccCCCCC-CCCCCccCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCT-VNGFYIPKNSRVIVNVWAIGRDTESW-SDPEIFFPERFVG 79 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~-i~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~~~ 79 (161)
++.+++.+||||+||++|+||++|++|.. .|.+.+|.+ ++|+.||||+.|.++.+++|||+++| +||++|+||||++
T Consensus 346 ~~~~dl~~L~Yl~avi~EtLRl~P~vp~~-~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~ 424 (500)
T PLN02169 346 FDNEDLEKLVYLHAALSESMRLYPPLPFN-HKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWIS 424 (500)
T ss_pred CCHHHHhcCHHHHHHHHHHHhcCCCCCcC-ceecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCC
Confidence 46789999999999999999999999988 566555544 59999999999999999999999999 8999999999997
Q ss_pred CCCCCC-CCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeec
Q 037605 80 SSIDLR-GHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYR 158 (161)
Q Consensus 80 ~~~~~~-~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 158 (161)
++.... ..+..|+|||+|+|+|+|++||++|++++++.|+++|+|++.++. .. .....+++.++.++.+++++|
T Consensus 425 ~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~---~~--~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 425 DNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGH---KI--EAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred CCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCC---Cc--ccccceEEecCCCEEEEEEeC
Confidence 544321 236789999999999999999999999999999999999987542 22 223456777889999999887
No 9
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00 E-value=9.1e-40 Score=266.49 Aligned_cols=155 Identities=50% Similarity=0.964 Sum_probs=134.1
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++++++++|||++|||+|+||++|+++..++|.+.+|++++|+.||+|+.|.++.+++|+|+++|+||++|+||||++++
T Consensus 340 ~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~ 419 (504)
T PLN00110 340 LVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEK 419 (504)
T ss_pred CCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCC
Confidence 46789999999999999999999999986689999999999999999999999999999999999999999999999653
Q ss_pred CCCC---CCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeec
Q 037605 82 IDLR---GHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYR 158 (161)
Q Consensus 82 ~~~~---~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 158 (161)
.... .....++|||.|+|.|+|++||++|++++++.|+++|+|++.++. +.+.....++++.++.++.+.+++|
T Consensus 420 ~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r 496 (504)
T PLN00110 420 NAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGV---ELNMDEAFGLALQKAVPLSAMVTPR 496 (504)
T ss_pred CcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCC---ccCcccccccccccCCCceEeeccC
Confidence 2211 123579999999999999999999999999999999999987652 3333334566777888999999888
Q ss_pred C
Q 037605 159 L 159 (161)
Q Consensus 159 ~ 159 (161)
.
T Consensus 497 ~ 497 (504)
T PLN00110 497 L 497 (504)
T ss_pred C
Confidence 4
No 10
>PTZ00404 cytochrome P450; Provisional
Probab=100.00 E-value=1.4e-39 Score=263.87 Aligned_cols=148 Identities=28% Similarity=0.578 Sum_probs=127.4
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCcee-ccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTV-NGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGS 80 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i-~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~ 80 (161)
++++++++|||++||++|+||++|+++...+|.+.+|+++ +|+.||+|+.|.++.+++||||++|+||++|+||||++.
T Consensus 334 ~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~ 413 (482)
T PTZ00404 334 VLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNP 413 (482)
T ss_pred CCccccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCC
Confidence 4778999999999999999999999997558999999999 999999999999999999999999999999999999864
Q ss_pred CCCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeec
Q 037605 81 SIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYR 158 (161)
Q Consensus 81 ~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 158 (161)
. ....++|||.|+|.|+|++||++|++++++.++++|++++.++. +.......++++. +.++.+.+++|
T Consensus 414 ~-----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~-~~~~~v~~~~R 482 (482)
T PTZ00404 414 D-----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGK---KIDETEEYGLTLK-PNKFKVLLEKR 482 (482)
T ss_pred C-----CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCC---CCCcccccceeec-CCCceeeeecC
Confidence 2 34589999999999999999999999999999999999986552 2222223344455 46788888776
No 11
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=1.5e-39 Score=265.95 Aligned_cols=158 Identities=48% Similarity=0.939 Sum_probs=135.3
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+++++||||+|||+|+||++|+++...+|.+.+|++++|+.||+|+.|.++.+++|||+++|+||++|+||||++.+
T Consensus 348 ~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~ 427 (517)
T PLN02687 348 VSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGG 427 (517)
T ss_pred CCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCC
Confidence 56789999999999999999999999986689999999999999999999999999999999999999999999999753
Q ss_pred CC----CCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeee
Q 037605 82 ID----LRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSY 157 (161)
Q Consensus 82 ~~----~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (161)
.. ....+..++|||.|+|.|+|++||++|++++++.|+++|++++.++..+..++......+.+.+..++.+.+++
T Consensus 428 ~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (517)
T PLN02687 428 EHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRP 507 (517)
T ss_pred CccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeecc
Confidence 21 11234579999999999999999999999999999999999997663323343333455666677889999998
Q ss_pred cC
Q 037605 158 RL 159 (161)
Q Consensus 158 r~ 159 (161)
|.
T Consensus 508 R~ 509 (517)
T PLN02687 508 RL 509 (517)
T ss_pred CC
Confidence 85
No 12
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=1.5e-39 Score=266.05 Aligned_cols=155 Identities=36% Similarity=0.641 Sum_probs=131.3
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+++.+||||+||++|+||++|+++...+|.+.+|++++|+.||||+.|.++.+++||||++|+||++|+||||+++.
T Consensus 358 ~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~ 437 (519)
T PLN00168 358 VSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGG 437 (519)
T ss_pred CCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCC
Confidence 57788999999999999999999999887789999999999999999999999999999999999999999999999742
Q ss_pred CC-----CCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEee
Q 037605 82 ID-----LRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPS 156 (161)
Q Consensus 82 ~~-----~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (161)
.. ....+..++|||.|+|+|+|++||++|++++++.|+++|+|++.++. ..+......++..++.++.+.++
T Consensus 438 ~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 514 (519)
T PLN00168 438 DGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGD---EVDFAEKREFTTVMAKPLRARLV 514 (519)
T ss_pred CCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCC---cCChhhhceeEEeecCCcEEEEE
Confidence 11 11234579999999999999999999999999999999999987652 22332223445555668888888
Q ss_pred ecC
Q 037605 157 YRL 159 (161)
Q Consensus 157 ~r~ 159 (161)
+|+
T Consensus 515 ~R~ 517 (519)
T PLN00168 515 PRR 517 (519)
T ss_pred ecc
Confidence 886
No 13
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=265.13 Aligned_cols=146 Identities=34% Similarity=0.627 Sum_probs=131.9
Q ss_pred CCHHHHHHHHhHhhcCCCCCCCcceeccCCcee-ccEEcCCCcEEEeechhhccCCCCCC-CCCCccCCCCCCCCCCCCC
Q 037605 9 NLEYLDMVVKETLRLHPVAPLLIPHESTEDCTV-NGFYIPKNSRVIVNVWAIGRDTESWS-DPEIFFPERFVGSSIDLRG 86 (161)
Q Consensus 9 ~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i-~g~~ip~g~~v~~~~~~~~~d~~~~~-~p~~F~P~R~~~~~~~~~~ 86 (161)
+|+||++||+|||||||++|.. .|.+.+|+++ +|+.||||+.|.++++++|||+.+|+ ||++|+||||+++......
T Consensus 350 ~m~yl~~vi~EsLRLyppvp~~-~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~ 428 (497)
T KOG0157|consen 350 QMKYLEMVIKESLRLYPPVPLV-ARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKR 428 (497)
T ss_pred hhHHHHHHHHHHhccCCCCchh-hcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCC
Confidence 5999999999999999999998 8999999999 58999999999999999999999997 9999999999976544345
Q ss_pred CCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecCC
Q 037605 87 HDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRLN 160 (161)
Q Consensus 87 ~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 160 (161)
++++|+|||+|+|.|+|++||++|++++++.|+++|+|++..+. . ......+++++++++.+++++|..
T Consensus 429 ~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~---~--~~~~~~~~l~~~~gl~v~~~~r~~ 497 (497)
T KOG0157|consen 429 HPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGD---K--PKPVPELTLRPKNGLKVKLRPRGS 497 (497)
T ss_pred CCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCC---C--ceeeeEEEEEecCCeEEEEEeCCC
Confidence 67899999999999999999999999999999999999987652 1 445678888999999999999863
No 14
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00 E-value=9.1e-40 Score=259.41 Aligned_cols=127 Identities=45% Similarity=0.784 Sum_probs=114.8
Q ss_pred CccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCCC
Q 037605 3 EESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSSI 82 (161)
Q Consensus 3 ~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~~ 82 (161)
+.+++++||||+|||+|+||++|+++..++|.+.+|++++|+.||||+.|.++.+++|+|+++|+||++|+|+||++.+.
T Consensus 314 ~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~ 393 (463)
T PF00067_consen 314 TFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERG 393 (463)
T ss_dssp HHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56789999999999999999999999666899999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCC
Q 037605 83 DLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGG 129 (161)
Q Consensus 83 ~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~ 129 (161)
........++|||.|+|.|+|++||++|++++++.|+++||+++.++
T Consensus 394 ~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~ 440 (463)
T PF00067_consen 394 ISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPG 440 (463)
T ss_dssp TBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTT
T ss_pred ccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCC
Confidence 33345678999999999999999999999999999999999999765
No 15
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00 E-value=4.8e-39 Score=262.13 Aligned_cols=155 Identities=25% Similarity=0.383 Sum_probs=131.1
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCcee-ccEEcCCCcEEEeechhhccCCCCC-CCCCCccCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTV-NGFYIPKNSRVIVNVWAIGRDTESW-SDPEIFFPERFVG 79 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~~~ 79 (161)
++++++++||||+|||+|+||++|+++.. .|.+.+|.++ +|+.||+|+.|.++.+++|||+++| +||++|+||||++
T Consensus 345 ~t~~~l~~LpYl~avi~EtLRl~p~v~~~-~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~ 423 (502)
T PLN02426 345 ASFEEMKEMHYLHAALYESMRLFPPVQFD-SKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLK 423 (502)
T ss_pred CCHHHHhcChHHHHHHHHHHhCCCCCCCc-ceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCC
Confidence 57889999999999999999999999987 6888888777 9999999999999999999999999 9999999999997
Q ss_pred CCCCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecC
Q 037605 80 SSIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRL 159 (161)
Q Consensus 80 ~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 159 (161)
++......+..++|||.|+|.|+|+++|++|++++++.|+++|++++.++. ........+++..+++++.+++++|.
T Consensus 424 ~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~gl~v~~~~r~ 500 (502)
T PLN02426 424 NGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRS---NRAPRFAPGLTATVRGGLPVRVRERV 500 (502)
T ss_pred CCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCC---CCCCcccceeEEecCCCEEEEEEEcc
Confidence 432112345679999999999999999999999999999999999985431 11112233567778889999999885
Q ss_pred C
Q 037605 160 N 160 (161)
Q Consensus 160 ~ 160 (161)
.
T Consensus 501 ~ 501 (502)
T PLN02426 501 R 501 (502)
T ss_pred C
Confidence 3
No 16
>PLN02500 cytochrome P450 90B1
Probab=100.00 E-value=4.4e-39 Score=261.55 Aligned_cols=148 Identities=27% Similarity=0.442 Sum_probs=124.6
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+++++|||++|||+|+||++|+++.. .|.+.+|++++||.||||+.|.++.+++||||++|+||++|+||||++++
T Consensus 335 ~~~~d~~~lpyl~avikEtlRl~P~~~~~-~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~ 413 (490)
T PLN02500 335 LNWEDYKKMEFTQCVINETLRLGNVVRFL-HRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNN 413 (490)
T ss_pred CCHHHhccCHHHHHHHHHHHhcCCCccCe-eeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCC
Confidence 46789999999999999999999999986 79999999999999999999999999999999999999999999999754
Q ss_pred CCCC------CCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEe
Q 037605 82 IDLR------GHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIP 155 (161)
Q Consensus 82 ~~~~------~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (161)
.... ..+..++|||.|+|.|+|++||++|++++++.|+++|+|++.++.. .. . .....+ ..++.+.+
T Consensus 414 ~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~--~~--~--~~~~~~-~~~l~~~~ 486 (490)
T PLN02500 414 NRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQ--AF--A--FPFVDF-PKGLPIRV 486 (490)
T ss_pred cccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCc--ce--e--cccccC-CCCceEEE
Confidence 2211 2356799999999999999999999999999999999999876521 11 1 112223 35777776
Q ss_pred ee
Q 037605 156 SY 157 (161)
Q Consensus 156 ~~ 157 (161)
++
T Consensus 487 ~~ 488 (490)
T PLN02500 487 RR 488 (490)
T ss_pred Ee
Confidence 54
No 17
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00 E-value=4.9e-39 Score=262.65 Aligned_cols=150 Identities=27% Similarity=0.447 Sum_probs=131.2
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCC-CCCCCccCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESW-SDPEIFFPERFVGS 80 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~~~~ 80 (161)
++.+++++||||+|||+||||++|+++.. +|.+.+|++++|+.||+|+.|.++.+++||||++| +||++|+||||++.
T Consensus 366 ~~~~~l~~lpYl~avi~EtlRl~p~~~~~-~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~ 444 (516)
T PLN02290 366 PSVDHLSKLTLLNMVINESLRLYPPATLL-PRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGR 444 (516)
T ss_pred CCHHHHhcChHHHHHHHHHHHcCCCcccc-ceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCC
Confidence 57889999999999999999999999875 89999999999999999999999999999999999 89999999999954
Q ss_pred CCCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecCC
Q 037605 81 SIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRLN 160 (161)
Q Consensus 81 ~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 160 (161)
+. .....++|||.|+|.|+|++||++|++++++.|+++|++++.++.. ......++..|++++.+.+++|+.
T Consensus 445 ~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~ 516 (516)
T PLN02290 445 PF---APGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR-----HAPVVVLTIKPKYGVQVCLKPLNP 516 (516)
T ss_pred CC---CCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcc-----cCccceeeecCCCCCeEEEEeCCC
Confidence 21 1234699999999999999999999999999999999999876521 111235677888999999999874
No 18
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00 E-value=7.5e-39 Score=266.46 Aligned_cols=153 Identities=28% Similarity=0.487 Sum_probs=130.0
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++++++++||||+|||+|+||++|+++.. .|.+.+|.+++||.||+||.|.++.+.+||||++|+||++|+||||+...
T Consensus 441 ~t~edL~kLPYL~AVIkEtLRL~p~~p~~-~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~ 519 (633)
T PLN02738 441 PTIEDMKKLKYTTRVINESLRLYPQPPVL-IRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDG 519 (633)
T ss_pred CCHHHHccCHHHHHHHHHHHhcCCCcccc-ceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCC
Confidence 57889999999999999999999999986 68889999999999999999999999999999999999999999998532
Q ss_pred C--CCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecC
Q 037605 82 I--DLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRL 159 (161)
Q Consensus 82 ~--~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 159 (161)
. ........++|||.|+|.|+|++||++|++++++.|+++|+|++.++. .+. ......+..++.++.+.+++|.
T Consensus 520 ~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~--~~~--~~~~~~~~~p~~~l~v~l~~R~ 595 (633)
T PLN02738 520 PNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGA--PPV--KMTTGATIHTTEGLKMTVTRRT 595 (633)
T ss_pred CCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCC--CCc--ccccceEEeeCCCcEEEEEECC
Confidence 1 112245679999999999999999999999999999999999997653 112 2223445556778888888875
No 19
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00 E-value=4e-39 Score=263.22 Aligned_cols=152 Identities=27% Similarity=0.418 Sum_probs=126.4
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCcee-ccEEcCCCcEEEeechhhccCCCCC-CCCCCccCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTV-NGFYIPKNSRVIVNVWAIGRDTESW-SDPEIFFPERFVG 79 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~~~ 79 (161)
++++++.+||||+|||+|+||++|+++.. .|.+.+|..+ +|+.||||+.|.++.+++||||++| +||++|+||||++
T Consensus 363 ~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~-~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~ 441 (516)
T PLN03195 363 LTYDSLGKLQYLHAVITETLRLYPAVPQD-PKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIK 441 (516)
T ss_pred CCHHHHhcCHHHHHHHHHHhhcCCCCcch-hhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCC
Confidence 46788999999999999999999999998 5656666555 9999999999999999999999999 9999999999996
Q ss_pred CCCCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecC
Q 037605 80 SSIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRL 159 (161)
Q Consensus 80 ~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 159 (161)
++......+..++|||.|+|+|+|++||++|++++++.|+++|++++.++. +.. ........++.++.+.+++|.
T Consensus 442 ~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~--~~~~~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 442 DGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGH---PVK--YRMMTILSMANGLKVTVSRRS 516 (516)
T ss_pred CCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCC---cce--eeeeeEEecCCCEEEEEEeCC
Confidence 432112345679999999999999999999999999999999999986542 222 222344567789999998874
No 20
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-39 Score=256.63 Aligned_cols=152 Identities=28% Similarity=0.467 Sum_probs=137.6
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+++.+||||+||||||+|+||.++.. .|...+|.+++||.|||||.|.++.+.+.+|+++|++|++|+||||++++
T Consensus 368 ~~~~~l~~~pyLrAcIKEtlRlyPv~~~~-~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~ 446 (519)
T KOG0159|consen 368 LTQKALTNMPYLRACIKETLRLYPVVPGN-GRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPS 446 (519)
T ss_pred cchHHHhhCHHHHHHHHhhhceecccccc-ccccchhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhcccc
Confidence 45678899999999999999999999998 89999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecCC
Q 037605 82 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRLN 160 (161)
Q Consensus 82 ~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 160 (161)
. ...+++.++|||.|+|+|+|++||.+|+.++|+.++++|+++...+ .++...+.+++.|..++.+.+++|+.
T Consensus 447 ~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~-----~pv~~~~~~il~P~~~l~f~f~~r~~ 519 (519)
T KOG0159|consen 447 T-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHE-----EPVEYVYRFILVPNRPLRFKFRPRNE 519 (519)
T ss_pred c-CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCC-----CCccceeEEEEcCCCCcceeeeeCCC
Confidence 3 3557899999999999999999999999999999999999998653 23444567788889999999999874
No 21
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00 E-value=7.5e-39 Score=261.47 Aligned_cols=159 Identities=48% Similarity=0.921 Sum_probs=136.2
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+++++|||++|||+|++|++|+++..++|.+.+|++++|+.||||+.|.++.+++|||+++|+||++|+||||..+.
T Consensus 347 ~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~ 426 (514)
T PLN03112 347 VQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAE 426 (514)
T ss_pred CChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCC
Confidence 57889999999999999999999999986689999999999999999999999999999999999999999999986532
Q ss_pred CC---C-CCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeee
Q 037605 82 ID---L-RGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSY 157 (161)
Q Consensus 82 ~~---~-~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (161)
.. . ......++|||.|+|.|+|++||++|++++++.|+++|+|++..+...+..+....+++..++++++.+.+.+
T Consensus 427 ~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (514)
T PLN03112 427 GSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATP 506 (514)
T ss_pred CCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeec
Confidence 11 0 1234579999999999999999999999999999999999987553233444445556777778899999999
Q ss_pred cCC
Q 037605 158 RLN 160 (161)
Q Consensus 158 r~~ 160 (161)
|.+
T Consensus 507 r~~ 509 (514)
T PLN03112 507 RLA 509 (514)
T ss_pred CCc
Confidence 864
No 22
>PLN02655 ent-kaurene oxidase
Probab=100.00 E-value=8.3e-39 Score=258.61 Aligned_cols=155 Identities=35% Similarity=0.602 Sum_probs=134.5
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+++++|||++||++|+||++|+++...+|.+.+|++++|+.||||+.|.++.+++|||+++|+||++|+||||++.+
T Consensus 312 ~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~ 391 (466)
T PLN02655 312 VTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEK 391 (466)
T ss_pred CCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCC
Confidence 46788999999999999999999999987679999999999999999999999999999999999999999999999754
Q ss_pred CCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecCCC
Q 037605 82 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRLNI 161 (161)
Q Consensus 82 ~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 161 (161)
.. ......++|||.|+|.|+|++||..|++++++.||++|++++.++.. ......+++..++.++.+.+++|..+
T Consensus 392 ~~-~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~r~~~ 466 (466)
T PLN02655 392 YE-SADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDE----EKEDTVQLTTQKLHPLHAHLKPRGSM 466 (466)
T ss_pred cc-cCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCc----cccchhheeEeecCCcEEEEeecCCC
Confidence 32 12346799999999999999999999999999999999999876521 12234466666788999999988764
No 23
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00 E-value=2.5e-38 Score=255.65 Aligned_cols=145 Identities=28% Similarity=0.485 Sum_probs=123.4
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++++++++|||++||++|+||++|+++.. .|.+.+|++++|+.||||+.|+++.+.+||||++|+||++|+||||++++
T Consensus 318 ~~~~~l~~lpyl~a~ikE~lRl~P~v~~~-~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~ 396 (463)
T PLN02774 318 IDWNDYKSMRFTRAVIFETSRLATIVNGV-LRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKS 396 (463)
T ss_pred CCHHHHhcCcHHHHHHHHHHhcCCCCCCc-ccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCC
Confidence 46789999999999999999999999876 79999999999999999999999999999999999999999999999654
Q ss_pred CCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeee
Q 037605 82 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSY 157 (161)
Q Consensus 82 ~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (161)
.. ....++|||+|+|.|+|++||.+|++++++.|+++|+|++.++. +. .. .. ...|++++.+++++
T Consensus 397 ~~---~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~---~~--~~-~~-~~~p~~g~~~~~~~ 462 (463)
T PLN02774 397 LE---SHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGD---KL--MK-FP-RVEAPNGLHIRVSP 462 (463)
T ss_pred cC---CCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCC---cc--cc-CC-CCCCCCCceEEeee
Confidence 21 12359999999999999999999999999999999999997652 11 11 11 22356777777653
No 24
>PLN03018 homomethionine N-hydroxylase
Probab=100.00 E-value=4.8e-38 Score=257.85 Aligned_cols=155 Identities=34% Similarity=0.645 Sum_probs=130.4
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+++.+|||++||++|+||++|+++...+|.+.+|++++|+.||||+.|.++.+++|+||++|+||++|+||||++.+
T Consensus 365 ~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~ 444 (534)
T PLN03018 365 VQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGD 444 (534)
T ss_pred CCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCC
Confidence 46788999999999999999999999987679999999999999999999999999999999999999999999999654
Q ss_pred CCC-----CCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEee
Q 037605 82 IDL-----RGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPS 156 (161)
Q Consensus 82 ~~~-----~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (161)
... ...+..++|||.|+|.|+|++||.+|++++++.|+++|++++.++. ..+++....+++.. +.++.+.++
T Consensus 445 ~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~~~~~-p~~~~v~~~ 521 (534)
T PLN03018 445 GITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDF--GPLSLEEDDASLLM-AKPLLLSVE 521 (534)
T ss_pred CccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCC--CCCCccccccceec-CCCeEEEEE
Confidence 221 1234679999999999999999999999999999999999986542 12333323344443 468889888
Q ss_pred ecC
Q 037605 157 YRL 159 (161)
Q Consensus 157 ~r~ 159 (161)
+|.
T Consensus 522 ~R~ 524 (534)
T PLN03018 522 PRL 524 (534)
T ss_pred ecc
Confidence 884
No 25
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00 E-value=2.8e-38 Score=254.64 Aligned_cols=146 Identities=23% Similarity=0.373 Sum_probs=128.9
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+++.+||||+|||+|+||++|+++.. +|.+.+|++++||.||||+.|+++.+++|+|+++|+||++|+||||++.+
T Consensus 306 ~~~~~~~~lpyl~avi~E~lRl~p~~~~~-~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~ 384 (452)
T PLN03141 306 LYWTDYMSLPFTQNVITETLRMGNIINGV-MRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKD 384 (452)
T ss_pred CCHHHHhccHHHHHHHHHHHhccCCcCCc-ceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCC
Confidence 46778899999999999999999998865 89999999999999999999999999999999999999999999999753
Q ss_pred CCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecCC
Q 037605 82 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRLN 160 (161)
Q Consensus 82 ~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 160 (161)
. .+..|+|||.|+|.|+|++||.+|++++++.|+++|+|+++++. .. ...++.+..++.+.+++|+.
T Consensus 385 ~----~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~ 451 (452)
T PLN03141 385 M----NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDT---IV-----NFPTVRMKRKLPIWVTRIDD 451 (452)
T ss_pred C----CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCC---ee-----ecccccCCCCceEEEEeCCC
Confidence 2 35679999999999999999999999999999999999986541 11 12366778899999999864
No 26
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00 E-value=2.3e-37 Score=251.08 Aligned_cols=148 Identities=26% Similarity=0.384 Sum_probs=128.5
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++++++++||||+|+|+|+||++|+++.. .|.+.+|++++|+.||||+.|.++.+++|||+++|+||++|+||||++..
T Consensus 342 ~~~~~l~~lpyl~a~i~E~lRl~p~~~~~-~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~ 420 (490)
T PLN02302 342 LTLKDVRKMEYLSQVIDETLRLINISLTV-FREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT 420 (490)
T ss_pred CCHHHHhcChHHHHHHHHHHHhCCCcccc-hhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC
Confidence 46788999999999999999999999886 78899999999999999999999999999999999999999999999643
Q ss_pred CCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecCC
Q 037605 82 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRLN 160 (161)
Q Consensus 82 ~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 160 (161)
. .+..++|||.|+|.|+|++||.+|++++++.|+++|+|++.++. ..+. ......|..++.+.+++|++
T Consensus 421 ~----~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~----~~~~--~~~~~~p~~~~~~~~~~~~~ 489 (490)
T PLN02302 421 P----KAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPG----CKVM--YLPHPRPKDNCLARITKVAS 489 (490)
T ss_pred C----CCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCC----Ccce--eCCCCCCCCCceEEEEeccC
Confidence 1 34579999999999999999999999999999999999986431 1111 22235677888999988864
No 27
>PLN02936 epsilon-ring hydroxylase
Probab=100.00 E-value=2.8e-37 Score=251.03 Aligned_cols=153 Identities=28% Similarity=0.470 Sum_probs=128.3
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++++++++||||+||++|+||++|+++...+|.+.+|+.++|+.||+|+.|.++.+++|||+++|+||++|+||||+..+
T Consensus 328 ~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~ 407 (489)
T PLN02936 328 PTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDG 407 (489)
T ss_pred CCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCC
Confidence 46788999999999999999999999988677778888889999999999999999999999999999999999999643
Q ss_pred CC--CCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecC
Q 037605 82 ID--LRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRL 159 (161)
Q Consensus 82 ~~--~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 159 (161)
.. ....+..++|||.|+|.|+|++||++|++++++.|+++|+++++++. +... ..+++..++.++.+++++|.
T Consensus 408 ~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~---~~~~--~~~~~~~~~~~~~v~~~~R~ 482 (489)
T PLN02936 408 PVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQ---DIVM--TTGATIHTTNGLYMTVSRRR 482 (489)
T ss_pred CCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCC---ccce--ecceEEeeCCCeEEEEEeee
Confidence 21 12224579999999999999999999999999999999999987652 2222 22344556678888888775
No 28
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00 E-value=6.2e-37 Score=248.11 Aligned_cols=149 Identities=28% Similarity=0.388 Sum_probs=129.2
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+++.+|||++||++|+||++|+++.. .|.+.+|++++|+.||+|+.|.++.+.+|+|+++|+||++|+||||++..
T Consensus 321 ~~~~~l~~lpyl~a~i~EtLRl~p~~~~~-~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~ 399 (472)
T PLN02987 321 LEWSDYKSMPFTQCVVNETLRVANIIGGI-FRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNS 399 (472)
T ss_pred CCHHHHhcChHHHHHHHHHHHccCCcCCc-cccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCC
Confidence 35678899999999999999999999865 79999999999999999999999999999999999999999999999754
Q ss_pred CCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeecC
Q 037605 82 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYRL 159 (161)
Q Consensus 82 ~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 159 (161)
.. ......++|||.|+|.|+|++||.+|++++++.|+++|++++.++. +. ....++.|.+++.+++++|.
T Consensus 400 ~~-~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~---~~----~~~~~~~p~~~~~~~~~~r~ 469 (472)
T PLN02987 400 GT-TVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQD---KL----VFFPTTRTQKRYPINVKRRD 469 (472)
T ss_pred CC-CCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCC---ce----eecccccCCCCceEEEEecc
Confidence 32 1234579999999999999999999999999999999999987552 21 12336678888999999884
No 29
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00 E-value=3.7e-37 Score=248.85 Aligned_cols=144 Identities=25% Similarity=0.445 Sum_probs=124.6
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSS 81 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~ 81 (161)
++.+++++|||++||++|+||++|+++.. .|.+.+|+.++|+.||||+.|.++.+++|+|+++|+||++|+||||++..
T Consensus 318 ~~~~~~~~l~yl~avi~EtlRl~p~~~~~-~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~ 396 (463)
T PLN02196 318 LTWEDTKKMPLTSRVIQETLRVASILSFT-FREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP 396 (463)
T ss_pred CCHHHHhcChHHHHHHHHHHhcCCCcccc-ceeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC
Confidence 46788999999999999999999999987 69999999999999999999999999999999999999999999999632
Q ss_pred CCCCCCCCceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeee
Q 037605 82 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSY 157 (161)
Q Consensus 82 ~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (161)
.+..++|||.|+|.|+|+++|++|++++++.|+++|+|++.++. .+. .+..+..|+.++.+++..
T Consensus 397 -----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~----~~~--~~~~~~~p~~~~~~~~~~ 461 (463)
T PLN02196 397 -----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTS----NGI--QYGPFALPQNGLPIALSR 461 (463)
T ss_pred -----CCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCC----Cce--EEcccccCCCCceEEEec
Confidence 34579999999999999999999999999999999999986542 122 223334567777777664
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8e-36 Score=232.88 Aligned_cols=153 Identities=36% Similarity=0.568 Sum_probs=133.7
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceecc----EEcCCCcEEEeechhhccCCCCCCCCCCccCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVNG----FYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERF 77 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g----~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~ 77 (161)
++++.+++||.|+.||+|||||+||.+.. .|.+.+|.++.+ |.||+|..|.++...+|+||++|+||+.|+|+||
T Consensus 325 l~~d~L~~lplL~~~IkEtLRL~~p~~~~-~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf 403 (486)
T KOG0684|consen 325 LTYDQLKDLPLLDSCIKETLRLHPPAHSL-MRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRF 403 (486)
T ss_pred CCHHHHhcchHHHHHHHHHHhcCCchhhH-HHhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhc
Confidence 68899999999999999999999988887 799999999976 9999999999999999999999999999999999
Q ss_pred CCCCCCC--CCCC--CceeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEE
Q 037605 78 VGSSIDL--RGHD--FQLLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLA 153 (161)
Q Consensus 78 ~~~~~~~--~~~~--~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (161)
++++++. .+.. +.+||||+|.|.|+|+.||.+|++.++..+|++||+++.++. -++.++ ..+++.|..++++
T Consensus 404 ~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~~-~P~~d~---s~~v~~P~g~v~i 479 (486)
T KOG0684|consen 404 LKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDGP-FPEVDY---SRMVMQPEGDVRI 479 (486)
T ss_pred cCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCCC-CCCCCH---HHhhcCCCCCceE
Confidence 9876543 1222 335999999999999999999999999999999999999872 233333 2448889999999
Q ss_pred EeeecC
Q 037605 154 IPSYRL 159 (161)
Q Consensus 154 ~~~~r~ 159 (161)
+.+.|.
T Consensus 480 rYK~R~ 485 (486)
T KOG0684|consen 480 RYKRRP 485 (486)
T ss_pred EEeecC
Confidence 999885
No 31
>PLN02648 allene oxide synthase
Probab=99.97 E-value=3.8e-32 Score=220.25 Aligned_cols=124 Identities=25% Similarity=0.454 Sum_probs=108.9
Q ss_pred CCccccCCCHHHHHHHHhHhhcCCCCCCCcceeccCCceec----cEEcCCCcEEEeechhhccCCCCCCCCCCccCCCC
Q 037605 2 VEESDLENLEYLDMVVKETLRLHPVAPLLIPHESTEDCTVN----GFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERF 77 (161)
Q Consensus 2 ~~~~~l~~l~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~----g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~ 77 (161)
++.+++++||||++|++|+||++|+++.. .|.+.+|++++ ||.||||+.|+++.+.+|||+++|+||++|+|+||
T Consensus 325 ~t~~~l~~l~yl~avi~EtLRl~p~v~~~-~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf 403 (480)
T PLN02648 325 VTFAALEKMPLVKSVVYEALRIEPPVPFQ-YGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRF 403 (480)
T ss_pred CCHHHHhcCHHHHHHHHHHHhhcCCcccc-cceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCC
Confidence 57788999999999999999999999987 67889999996 79999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeec---------CCCCCCCccHHHHHHHHHHHHHHHHHhce-eecCCC
Q 037605 78 VGSSIDLRGHDFQLLPF---------GSGRRGCPGMQLGLTIVKQVIAQLVHCFD-WELPGG 129 (161)
Q Consensus 78 ~~~~~~~~~~~~~~~~F---------g~G~r~C~G~~lA~~~~~~~l~~ll~~f~-~~~~~~ 129 (161)
++++.. ....+++| |+|+|.|+|++||++|++++++.|+++|+ |++.++
T Consensus 404 ~~~~~~---~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~ 462 (480)
T PLN02648 404 MGEEGE---KLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVD 462 (480)
T ss_pred CCCCcc---ccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCC
Confidence 864322 11234444 67789999999999999999999999998 998765
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=2.6e-31 Score=212.00 Aligned_cols=131 Identities=33% Similarity=0.438 Sum_probs=112.9
Q ss_pred HHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCCCCCCCCCCc
Q 037605 11 EYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSSIDLRGHDFQ 90 (161)
Q Consensus 11 ~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~~~~~ 90 (161)
+|++++++|+||++|+++. ..|.+++|++++|+.||+|+.|.++++++||||++|++|++|+|+||. ..
T Consensus 280 ~~~~~~v~E~LR~~ppv~~-~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~ 348 (411)
T COG2124 280 PLLEAVVEETLRLYPPVPL-ARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NA 348 (411)
T ss_pred HHHHHHHHHHHHhCCchhc-cceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CC
Confidence 6999999999999999999 589999999999999999999999999999999999999999999986 46
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccCccceeeeeccCCcceEEEeeec
Q 037605 91 LLPFGSGRRGCPGMQLGLTIVKQVIAQLVHCFDWELPGGMLPTELDLTEEFSLVTPKAKHLLAIPSYR 158 (161)
Q Consensus 91 ~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 158 (161)
++|||+|+|.|+|..||++|++++++.++++|++....+ . . .........+.....+.++.+
T Consensus 349 ~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~-~-~----~~~~~~~~~~~g~~~l~v~~~ 410 (411)
T COG2124 349 HLPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLAE-P-P----PLVRRPTLVPRGGERLPVRRR 410 (411)
T ss_pred CcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCC-C-C----CccccccccCCCcceeeeecC
Confidence 899999999999999999999999999999999887654 1 1 112233444555666666544
No 33
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=54.78 E-value=11 Score=25.82 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=16.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHhc
Q 037605 100 GCPGMQLGLTIVKQVIAQLVHCF 122 (161)
Q Consensus 100 ~C~G~~lA~~~~~~~l~~ll~~f 122 (161)
+|.|+.||..++-.++..++..-
T Consensus 19 N~~gKKFsE~QiN~FIs~lItsP 41 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITSP 41 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS-
T ss_pred cccchHHHHHHHHHHHHHHhcCC
Confidence 79999999999999999998754
No 34
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=53.03 E-value=10 Score=21.93 Aligned_cols=8 Identities=38% Similarity=0.638 Sum_probs=6.0
Q ss_pred cCCCCCCC
Q 037605 73 FPERFVGS 80 (161)
Q Consensus 73 ~P~R~~~~ 80 (161)
||||||..
T Consensus 44 DPERWLP~ 51 (59)
T PF08492_consen 44 DPERWLPK 51 (59)
T ss_pred CccccCch
Confidence 78888853
No 35
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=47.62 E-value=19 Score=26.33 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=28.2
Q ss_pred HHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEe
Q 037605 11 EYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIV 54 (161)
Q Consensus 11 ~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~ 54 (161)
....|||+|+.-+..... + .=...+|+.++|..||||+.+.-
T Consensus 53 n~I~A~V~~~qtv~~Gs~-v-rlRLle~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 53 NTIRAVVDGTQTVVDGSR-V-RLRLLEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred CeEEEEEecceEEeCCCE-E-EEEEcCceEECCEEeCCCCEEEE
Confidence 345677777776654322 1 11347889999999999997665
No 36
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=47.31 E-value=12 Score=23.28 Aligned_cols=20 Identities=20% Similarity=0.655 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhceeecCC
Q 037605 109 TIVKQVIAQLVHCFDWELPG 128 (161)
Q Consensus 109 ~~~~~~l~~ll~~f~~~~~~ 128 (161)
.-|+-++.++|+-|||.|++
T Consensus 60 ~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHHhccCCceeee
Confidence 45788999999999999864
No 37
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=46.01 E-value=33 Score=23.74 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=17.8
Q ss_pred ccCCceeccEEcCCCcEEEeec
Q 037605 35 STEDCTVNGFYIPKNSRVIVNV 56 (161)
Q Consensus 35 ~~~d~~i~g~~ip~g~~v~~~~ 56 (161)
..+|+.++|..||+|+.-+..+
T Consensus 52 f~~dv~igGk~l~AG~Ysl~ti 73 (145)
T PF11138_consen 52 FSKDVTIGGKKLKAGTYSLFTI 73 (145)
T ss_pred ECCCeEECCEEcCCeeEEEEEe
Confidence 3679999999999998766554
No 38
>PRK06789 flagellar motor switch protein; Validated
Probab=45.93 E-value=24 Score=21.43 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=29.7
Q ss_pred HHHhHhhcCCCCCCCcceeccCC--ceeccEEcCCCcEEEee
Q 037605 16 VVKETLRLHPVAPLLIPHESTED--CTVNGFYIPKNSRVIVN 55 (161)
Q Consensus 16 ~i~E~lRl~p~~~~~~~r~~~~d--~~i~g~~ip~g~~v~~~ 55 (161)
-++|.+.+.+..-..+-+.+.+. ..++|..|.+|..|.++
T Consensus 21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~ 62 (74)
T PRK06789 21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKN 62 (74)
T ss_pred EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEEC
Confidence 36788889887665555666554 45599999999988775
No 39
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=45.90 E-value=16 Score=25.95 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=32.8
Q ss_pred CCccCCCCCCCCCCCCCCCCceeecCCCCCCCccH-HHHHH-HHHHHHHHHHHhceeec
Q 037605 70 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGM-QLGLT-IVKQVIAQLVHCFDWEL 126 (161)
Q Consensus 70 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-~lA~~-~~~~~l~~ll~~f~~~~ 126 (161)
-+|+|+||-.---....+....+-|+.|+=.|-|- ..... ...--++.+|+++.+..
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~~~~~~L~~~g~~~ 87 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAARKYARILQKLGFPV 87 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 47888887432111222455688999999999983 22221 12233445566666543
No 40
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=43.48 E-value=60 Score=25.72 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=39.9
Q ss_pred HHHHHhHhhcCCCC---CCCcceeccCCceecc----EEcCCCcEEEeechhhccCCCCCCCCCCccCCCCCCCCCCCCC
Q 037605 14 DMVVKETLRLHPVA---PLLIPHESTEDCTVNG----FYIPKNSRVIVNVWAIGRDTESWSDPEIFFPERFVGSSIDLRG 86 (161)
Q Consensus 14 ~a~i~E~lRl~p~~---~~~~~r~~~~d~~i~g----~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~~~~~~~~~~ 86 (161)
+.+++.|..+.||. |+.+.-..+.|..+-= -.|..||.|.++ +
T Consensus 276 er~V~a~kel~~PG~iGpFcLq~~~t~dl~~vVfevS~Ri~gGTNv~~~------------------------------G 325 (361)
T COG1759 276 ERFVEATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSARIVGGTNVYMG------------------------------G 325 (361)
T ss_pred HHHHHHHHHhcCCCcccceeeeeeecCCccEEEEEEeccccCCcccccC------------------------------C
Confidence 56777788888864 4444445566654421 234555533322 2
Q ss_pred CCCceeecCCCCCCCccHHHHHHHHHHHH
Q 037605 87 HDFQLLPFGSGRRGCPGMQLGLTIVKQVI 115 (161)
Q Consensus 87 ~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l 115 (161)
++++++-||. -+-.|+++|+ |++.++
T Consensus 326 spYs~l~~~~--pms~GrRIA~-EIk~A~ 351 (361)
T COG1759 326 SPYSNLYWGE--PMSTGRRIAR-EIKEAI 351 (361)
T ss_pred CcchhhhcCC--CcchhhHHHH-HHHHHH
Confidence 3445555553 3567999997 777665
No 41
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=39.95 E-value=20 Score=21.23 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=12.3
Q ss_pred CHHHHHHHHhHhhcC
Q 037605 10 LEYLDMVVKETLRLH 24 (161)
Q Consensus 10 l~~l~a~i~E~lRl~ 24 (161)
..+++.+|+|++|+.
T Consensus 40 ~~fv~~~IkEA~RFk 54 (65)
T PF15300_consen 40 KQFVEMIIKEAARFK 54 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 357899999999974
No 42
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=39.88 E-value=16 Score=26.09 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=32.0
Q ss_pred CCccCCCCCCCCCCCCCCCCceeecCCCCCCCcc-HHHHHHH-HHHHHHHHHHhceee
Q 037605 70 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPG-MQLGLTI-VKQVIAQLVHCFDWE 125 (161)
Q Consensus 70 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G-~~lA~~~-~~~~l~~ll~~f~~~ 125 (161)
-+|+|++|-.---....+....+-|+.|+=.|-| +...... ..--++.+|++..+.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~i~~~L~~~g~~ 86 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFP 86 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCC
Confidence 5788888743211112234457899999999998 3222111 223344667766654
No 43
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=39.58 E-value=10 Score=27.11 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCccCCCCCCCCCCCCCCCCceeecCCCCCCCccHH
Q 037605 70 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGMQ 105 (161)
Q Consensus 70 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~ 105 (161)
.+|+|++|-.-=-....+....+-|..|+-.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 368888884321111224457899999999999865
No 44
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=38.80 E-value=14 Score=20.94 Aligned_cols=10 Identities=50% Similarity=1.175 Sum_probs=8.7
Q ss_pred ecCCCCCCCc
Q 037605 93 PFGSGRRGCP 102 (161)
Q Consensus 93 ~Fg~G~r~C~ 102 (161)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999985
No 45
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=38.09 E-value=24 Score=23.63 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=18.2
Q ss_pred eccCCceeccEEcCCCcEEEee
Q 037605 34 ESTEDCTVNGFYIPKNSRVIVN 55 (161)
Q Consensus 34 ~~~~d~~i~g~~ip~g~~v~~~ 55 (161)
.++.|..++|-.||+|++|+.-
T Consensus 72 I~~~d~~~~g~~i~~GtWv~~~ 93 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGTWVVGV 93 (122)
T ss_pred ecCCCcccCCeeecceEEEEEE
Confidence 4567999999999999998654
No 46
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=37.92 E-value=9.3 Score=27.24 Aligned_cols=35 Identities=29% Similarity=0.512 Sum_probs=24.0
Q ss_pred CCccCCCCCCCCCCCCCCCCceeecCCCCCCCccH
Q 037605 70 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGM 104 (161)
Q Consensus 70 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 104 (161)
-+|+|+||-.---....+....+-|+.|+=.|-|-
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 47889888532111222445688999999999986
No 47
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=37.16 E-value=12 Score=27.23 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=32.7
Q ss_pred CCccCCCCCCCCCCCCCCCCceeecCCCCCCCccH-----------HHHHHHHHHHHHHHHHhceee
Q 037605 70 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGM-----------QLGLTIVKQVIAQLVHCFDWE 125 (161)
Q Consensus 70 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-----------~lA~~~~~~~l~~ll~~f~~~ 125 (161)
.+|+|.||-.--.....+...-.-|+.|+=.|-|. ++|+..-++....-+.+|.+.
T Consensus 50 ~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA~se~~ar~aark~aRilqkLgf~~~f~~fki~ 116 (200)
T KOG3302|consen 50 AEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGAKSEDSARLAARKYARILQKLGFPVKFRDFKIN 116 (200)
T ss_pred cccCcccccEEEEEEcCCceEEEEecCCcEEEeccCCHHHHHHHHHHHHHHHHHcCCCceehheeeE
Confidence 57899997431111122344567899999999963 345555555555555555543
No 48
>PLN00062 TATA-box-binding protein; Provisional
Probab=37.13 E-value=24 Score=25.26 Aligned_cols=55 Identities=20% Similarity=0.392 Sum_probs=32.3
Q ss_pred CCccCCCCCCCCCCCCCCCCceeecCCCCCCCccH-HHHHH-HHHHHHHHHHHhcee
Q 037605 70 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGM-QLGLT-IVKQVIAQLVHCFDW 124 (161)
Q Consensus 70 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-~lA~~-~~~~~l~~ll~~f~~ 124 (161)
-+|+|++|-.---....+....+-|+.|+=.|-|. ..... ...--++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 57888887432111122345688999999999984 32222 223344566766655
No 49
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=33.95 E-value=18 Score=22.29 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=21.8
Q ss_pred CccCCCCCCCCCCCCCCCCceeecCCCCCCCccH
Q 037605 71 IFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGM 104 (161)
Q Consensus 71 ~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 104 (161)
+|+|++|-.---....+....+-|..|+=.|.|.
T Consensus 32 ~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 32 EYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred EEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 6788877321111122345678999999999985
No 50
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=33.20 E-value=18 Score=17.70 Aligned_cols=6 Identities=67% Similarity=1.204 Sum_probs=3.1
Q ss_pred ccCCCC
Q 037605 72 FFPERF 77 (161)
Q Consensus 72 F~P~R~ 77 (161)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 345554
No 51
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=33.07 E-value=27 Score=25.79 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=16.7
Q ss_pred hhccCCCCCCCCCCccCCC
Q 037605 58 AIGRDTESWSDPEIFFPER 76 (161)
Q Consensus 58 ~~~~d~~~~~~p~~F~P~R 76 (161)
..+.|+.+|.|...|+|.|
T Consensus 193 ~~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 193 PDNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCCCCcccccCccccCCCC
Confidence 3488999999999999987
No 52
>PRK00394 transcription factor; Reviewed
Probab=29.73 E-value=16 Score=26.12 Aligned_cols=34 Identities=32% Similarity=0.540 Sum_probs=23.4
Q ss_pred CCccCCCCCCCCCCCCCCCCceeecCCCCCCCcc
Q 037605 70 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPG 103 (161)
Q Consensus 70 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G 103 (161)
-+|+|+||-.---....+....+-|+.|+=.|-|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 4788888853221122334568899999999998
No 53
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=22.76 E-value=81 Score=21.01 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=16.7
Q ss_pred CCCccHHHHHHHHHHHHHHHHH
Q 037605 99 RGCPGMQLGLTIVKQVIAQLVH 120 (161)
Q Consensus 99 r~C~G~~lA~~~~~~~l~~ll~ 120 (161)
|.|+|.-++......++..|-.
T Consensus 5 H~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 5 HLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp S--HHHHHHHHHHHHHHHHHTS
T ss_pred CcCccHHHHHHHHHHHHHHcCC
Confidence 7899999999998888877743
No 54
>PRK05933 type III secretion system protein; Validated
Probab=22.64 E-value=89 Score=24.82 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=31.6
Q ss_pred HHHHHHhHhhcCCCCCCCcceec---cCCceeccEEcCCCcEEEee
Q 037605 13 LDMVVKETLRLHPVAPLLIPHES---TEDCTVNGFYIPKNSRVIVN 55 (161)
Q Consensus 13 l~a~i~E~lRl~p~~~~~~~r~~---~~d~~i~g~~ip~g~~v~~~ 55 (161)
.+.-|+|.|+|.+..-.-+-|.+ .-|+.++|..|.+|..|.++
T Consensus 317 T~l~IkELL~L~~GSVIeLDk~a~GEpVDI~VNGrLIARGEVVVVd 362 (372)
T PRK05933 317 YSLSVGEFLKLGPGSILQFDGVHPTLGVDIILNGAKVGRGEIIALG 362 (372)
T ss_pred ccccHHHHhccCCCCEEEeCCcCCCCCEEEEECCEEEeeeeEEEEC
Confidence 34568999999987655543443 33566799999999998876
No 55
>PHA03162 hypothetical protein; Provisional
Probab=21.10 E-value=61 Score=22.00 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=18.4
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHH
Q 037605 95 GSGRRGCPGMQLGLTIVKQVIAQL 118 (161)
Q Consensus 95 g~G~r~C~G~~lA~~~~~~~l~~l 118 (161)
++|.+.|||+...+-++..=|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468999999988877776666654
No 56
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=20.79 E-value=79 Score=25.87 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=28.3
Q ss_pred HHHHHHHHhHhhcCCCCCCCcceeccCCceeccEEcCCCcEEEee
Q 037605 11 EYLDMVVKETLRLHPVAPLLIPHESTEDCTVNGFYIPKNSRVIVN 55 (161)
Q Consensus 11 ~~l~a~i~E~lRl~p~~~~~~~r~~~~d~~i~g~~ip~g~~v~~~ 55 (161)
..+.|||+|+.-+.-... + .=...+|+.++|..||+||.|...
T Consensus 256 n~I~A~V~~~qtv~~G~~-v-rlRLle~~~v~~~~ipkgt~l~g~ 298 (410)
T TIGR03779 256 NTIRACVHETQTVVDGSA-V-KLRLLEPIQAGDLVIPKGTVLYGT 298 (410)
T ss_pred CceEEEEcCceEEecCCE-E-EEEEcCceeeCCEEecCCCEEEEE
Confidence 445677777766653222 1 113368899999999999976554
No 57
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=20.17 E-value=26 Score=16.73 Aligned_cols=7 Identities=57% Similarity=1.043 Sum_probs=3.8
Q ss_pred ccCCCCC
Q 037605 72 FFPERFV 78 (161)
Q Consensus 72 F~P~R~~ 78 (161)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 3566653
Done!