Query 037606
Match_columns 165
No_of_seqs 58 out of 60
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 02:39:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06749 DUF1218: Protein of u 99.3 1.3E-12 2.8E-17 96.7 5.1 69 52-122 2-97 (97)
2 PTZ00201 amastin surface glyco 79.8 11 0.00023 31.7 7.5 43 98-140 136-183 (192)
3 PF13903 Claudin_2: PMP-22/EMP 67.3 45 0.00097 24.9 7.7 16 108-123 155-170 (172)
4 PF07344 Amastin: Amastin surf 51.9 1.2E+02 0.0025 23.9 9.2 73 45-126 65-151 (155)
5 PF07062 Clc-like: Clc-like; 29.3 3.6E+02 0.0077 22.9 8.7 21 109-129 179-199 (211)
6 PF09813 Coiled-coil_56: Coile 23.7 38 0.00083 26.0 0.9 30 114-143 55-85 (100)
7 COG1950 Predicted membrane pro 23.4 1.9E+02 0.0042 22.9 4.7 22 111-135 97-119 (120)
8 PF13858 DUF4199: Protein of u 22.6 3.5E+02 0.0075 20.5 6.5 89 46-140 4-99 (163)
9 PF06645 SPC12: Microsomal sig 22.4 60 0.0013 23.1 1.6 21 3-23 15-35 (76)
10 PF04478 Mid2: Mid2 like cell 22.3 28 0.00061 28.6 -0.1 36 103-141 50-86 (154)
No 1
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=99.34 E-value=1.3e-12 Score=96.74 Aligned_cols=69 Identities=23% Similarity=0.286 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhchhh---hh-----------------------HH-HHHHHHHHHHHHHHHHhhhhhccccCCCCCCccc
Q 037606 52 SIVALTASVVVGFCN---IK-----------------------LL-PMLAVGMLFWPTIAELIHRTRHVHHNMSTIRPTA 104 (165)
Q Consensus 52 aa~~L~~s~v~G~~s---~f-----------------------~~-~~l~~~~l~W~t~~~~~~~~~n~~~~~~~~C~t~ 104 (165)
|+++|+++|++++.. .| |+ ..++..+++|.+..|+.|.++|.+. +++||++
T Consensus 2 A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~--~~~C~~~ 79 (97)
T PF06749_consen 2 AAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF--NPSCYTV 79 (97)
T ss_pred HHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc--CCccccc
Confidence 678888888864432 11 44 5555666677777777676666555 7789999
Q ss_pred CCccchhHHHHHHHHHHH
Q 037606 105 KTGLFGGAAFMALNASLF 122 (165)
Q Consensus 105 K~GvFgGaAvLsL~a~lf 122 (165)
|+|+|+|||+|+|++++|
T Consensus 80 k~GvF~~~a~l~l~t~~f 97 (97)
T PF06749_consen 80 KKGVFAGGAVLSLVTALF 97 (97)
T ss_pred CCceeeHhHHHHHHHHhC
Confidence 999999999999999875
No 2
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=79.85 E-value=11 Score=31.70 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=25.1
Q ss_pred CCCCcccCC-c-cchhHHHHHHHHHHHHH---HHHHHhhcCCCCccch
Q 037606 98 STIRPTAKT-G-LFGGAAFMALNASLFWL---ICLMLADNARDDYFDE 140 (165)
Q Consensus 98 ~~~C~t~K~-G-vFgGaAvLsL~a~lfwl---i~lmL~~nar~d~~~~ 140 (165)
...||-.|+ + -||-|=.|-+.|-.+-| +-++|--+.+++.-+|
T Consensus 136 ~~~C~~~~~~~~~yGaGF~Llv~AW~L~iinii~lllp~~~~~~~~~~ 183 (192)
T PTZ00201 136 GPLCPRVRDMGYRFGTGFALLVVAWILDILNIIFLLLPCTVPASKANE 183 (192)
T ss_pred CccccccccCCCCccCcHHHHHHHHHHHHHHHHHHHhccccCCccccc
Confidence 346988877 5 46666566666654444 4556655555544444
No 3
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=67.34 E-value=45 Score=24.86 Aligned_cols=16 Identities=25% Similarity=0.195 Sum_probs=9.0
Q ss_pred cchhHHHHHHHHHHHH
Q 037606 108 LFGGAAFMALNASLFW 123 (165)
Q Consensus 108 vFgGaAvLsL~a~lfw 123 (165)
+..+|+++.+.+.++-
T Consensus 155 la~~a~~~~l~a~~l~ 170 (172)
T PF13903_consen 155 LAWVAFILLLLAGILF 170 (172)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666666665543
No 4
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=51.94 E-value=1.2e+02 Score=23.91 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHHHhhhchhhhh------------HHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCcccC-Cc-cch
Q 037606 45 TIILGFLSIVALTASVVVGFCNIK------------LLPMLAVGMLFWPTIAELIHRTRHVHHNMSTIRPTAK-TG-LFG 110 (165)
Q Consensus 45 a~~LG~~aa~~L~~s~v~G~~s~f------------~~~~l~~~~l~W~t~~~~~~~~~n~~~~~~~~C~t~K-~G-vFg 110 (165)
+-++.++|++...++-+.|...++ -+.+++.....|+..+..++ .+.|+..| ++ -|+
T Consensus 65 a~afaIisi~~~~~a~v~g~~~l~~~~~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~---------~~~C~~~~~~~~~yg 135 (155)
T PF07344_consen 65 AQAFAIISIFVYGAAFVLGVLLLCCCSCLRWVCLVLNIVGIVTLLVVWALMVVVYY---------GGFCGALKSRGYKYG 135 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------cCCCcCccCCCcccC
Confidence 456667777777666665543322 33445566777777776555 34586554 44 577
Q ss_pred hHHHHHHHHHHHHHHH
Q 037606 111 GAAFMALNASLFWLIC 126 (165)
Q Consensus 111 GaAvLsL~a~lfwli~ 126 (165)
-|=.|.+.|-.+-++.
T Consensus 136 ~GF~L~v~aw~l~~i~ 151 (155)
T PF07344_consen 136 AGFALFVAAWCLDIIN 151 (155)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 7777777775555543
No 5
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=29.34 E-value=3.6e+02 Score=22.92 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=13.2
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 037606 109 FGGAAFMALNASLFWLICLML 129 (165)
Q Consensus 109 FgGaAvLsL~a~lfwli~lmL 129 (165)
.|=+-.|.+.++++++.+++.
T Consensus 179 ~G~afYl~~~g~l~~~~a~l~ 199 (211)
T PF07062_consen 179 YGYAFYLHLAGSLLLLFAFLF 199 (211)
T ss_pred eeHHHHHHHHHHHHHHHHHHH
Confidence 556666777777666655443
No 6
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=23.71 E-value=38 Score=26.02 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccch-hcc
Q 037606 114 FMALNASLFWLICLMLADNARDDYFDE-EDQ 143 (165)
Q Consensus 114 vLsL~a~lfwli~lmL~~nar~d~~~~-~~~ 143 (165)
.|+|-+..++|..|....-..|++.|| |+.
T Consensus 55 gl~L~~~v~gIY~YTi~sV~Qe~F~D~~eee 85 (100)
T PF09813_consen 55 GLALGAFVVGIYAYTIYSVKQEDFLDELEEE 85 (100)
T ss_pred HHHHHHHHHHHHhheeeeechhhhHHHhhhH
Confidence 345555666666666666778888888 553
No 7
>COG1950 Predicted membrane protein [Function unknown]
Probab=23.36 E-value=1.9e+02 Score=22.91 Aligned_cols=22 Identities=41% Similarity=0.833 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHH-HHHhhcCCC
Q 037606 111 GAAFMALNASLFWLIC-LMLADNARD 135 (165)
Q Consensus 111 GaAvLsL~a~lfwli~-lmL~~nar~ 135 (165)
|+.+||..+ |++. +.+++|.|+
T Consensus 97 gaivLsiis---~li~~~l~~~~~~~ 119 (120)
T COG1950 97 GAIVLSIIS---WLINKLLLRDNRKK 119 (120)
T ss_pred HHHHHHHHH---HHHHHHHhhccccC
Confidence 445555544 6665 555666654
No 8
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=22.58 E-value=3.5e+02 Score=20.51 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHhhhchhhh--h--HHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCcccCCccchhH---HHHHHH
Q 037606 46 IILGFLSIVALTASVVVGFCNI--K--LLPMLAVGMLFWPTIAELIHRTRHVHHNMSTIRPTAKTGLFGGA---AFMALN 118 (165)
Q Consensus 46 ~~LG~~aa~~L~~s~v~G~~s~--f--~~~~l~~~~l~W~t~~~~~~~~~n~~~~~~~~C~t~K~GvFgGa---AvLsL~ 118 (165)
+.+|+..+++.++..+.|.-+. . +...+...++.+..+.......||...+. --+-|.|+-.|- .+-+|.
T Consensus 4 ~i~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~R~~~~~g---~isf~~a~~~g~~~~~ia~li 80 (163)
T PF13858_consen 4 LIFGLILILFFLLSYLLGMHDIKYPSNSWLGILSMVITIIFIYFAIRRYRKKYNGG---FISFGQAFKVGFLISLIAGLI 80 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHccCC---CeeHHHHHHHHHHHHHHHHHH
Confidence 4567777776666666643321 1 22233334444444445545555422111 223444444443 333444
Q ss_pred HHHHHHHHHHHhhcCCCCccch
Q 037606 119 ASLFWLICLMLADNARDDYFDE 140 (165)
Q Consensus 119 a~lfwli~lmL~~nar~d~~~~ 140 (165)
++++|++++-.- ..||+|+
T Consensus 81 ~~v~~~i~~~~I---dP~~~~~ 99 (163)
T PF13858_consen 81 SAVFQYIYFNYI---DPDFFEN 99 (163)
T ss_pred HHHHHHHHHHHh---CHHHHHH
Confidence 445555543333 3355554
No 9
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=22.39 E-value=60 Score=23.11 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=17.1
Q ss_pred hhhhhHHHHHHHHHHHhhcCC
Q 037606 3 LTGGVLGVKSSILGIAAENRK 23 (165)
Q Consensus 3 ~vV~~LGvlS~ilGf~AE~kK 23 (165)
.++...+++|||.|++.|+=+
T Consensus 15 ~il~~~~iisfi~Gy~~q~~~ 35 (76)
T PF06645_consen 15 YILIISAIISFIVGYITQSFS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999977665
No 10
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=22.32 E-value=28 Score=28.56 Aligned_cols=36 Identities=17% Similarity=0.437 Sum_probs=21.3
Q ss_pred ccCCccch-hHHHHHHHHHHHHHHHHHHhhcCCCCccchh
Q 037606 103 TAKTGLFG-GAAFMALNASLFWLICLMLADNARDDYFDEE 141 (165)
Q Consensus 103 t~K~GvFg-GaAvLsL~a~lfwli~lmL~~nar~d~~~~~ 141 (165)
++-.-+.| |+++|-....++|+.| .++.|.||.|-|
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c---~r~kktdfidSd 86 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFC---IRRKKTDFIDSD 86 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEE---EecccCccccCC
Confidence 33344444 6666655555555554 577788877643
Done!