Query 037606
Match_columns 165
No_of_seqs 58 out of 60
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 03:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e12_A SM-like motif, hypothet 26.6 14 0.0005 27.1 0.1 25 135-161 52-76 (101)
2 2zt9_E Cytochrome B6-F complex 20.3 75 0.0026 18.8 2.4 19 1-19 1-19 (31)
3 1ic9_A TH10AOX; three stranded 18.8 45 0.0015 19.2 1.1 11 98-108 14-24 (29)
4 2knc_B Integrin beta-3; transm 18.5 1.8E+02 0.006 20.0 4.4 20 37-56 3-23 (79)
5 1rzh_H Reaction center protein 9.9 3.3E+02 0.011 22.9 4.5 22 121-142 19-46 (260)
6 2ks1_B Epidermal growth factor 8.9 1.8E+02 0.0061 18.1 1.9 14 101-114 3-18 (44)
7 2o9g_A Aquaporin Z; integral m 8.0 7.8E+02 0.027 19.3 8.2 13 71-83 94-106 (234)
8 1eys_H Photosynthetic reaction 7.9 3.4E+02 0.012 22.7 3.7 22 121-142 18-45 (259)
9 3d9s_A Aquaporin-5, AQP-5; aqu 7.6 8.8E+02 0.03 19.6 8.3 12 72-83 99-110 (266)
10 2wjn_L Reaction center protein 7.4 1.9E+02 0.0066 24.6 2.0 42 5-50 32-78 (274)
No 1
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=26.58 E-value=14 Score=27.10 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=20.3
Q ss_pred CCccchhccccccccCcccccccCccC
Q 037606 135 DDYFDEEDQNHKCEYGQVFTTDYDAKG 161 (165)
Q Consensus 135 ~d~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
..|||+.+ .+|..||..-+|+|.+-
T Consensus 52 Q~y~d~~~--~eG~NGqlRlD~~D~~~ 76 (101)
T 2e12_A 52 QTYRDEQE--REGSNGQLRIDHLDASQ 76 (101)
T ss_dssp EEEECTTC--CEEEEEEEEEECSSSSC
T ss_pred HHhhCccc--ccCccceEEeccCCCcc
Confidence 46888855 39999999999998765
No 2
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=20.30 E-value=75 Score=18.79 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=15.7
Q ss_pred CchhhhhHHHHHHHHHHHh
Q 037606 1 MVLTGGVLGVKSSILGIAA 19 (165)
Q Consensus 1 ms~vV~~LGvlS~ilGf~A 19 (165)
|..+++..+.+++.+|+.+
T Consensus 1 m~~~i~y~~~l~~~~~iA~ 19 (31)
T 2zt9_E 1 MLAIVAYIGFLALFTGIAA 19 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 7788888999988888764
No 3
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=18.76 E-value=45 Score=19.25 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=9.0
Q ss_pred CCCCcccCCcc
Q 037606 98 STIRPTAKTGL 108 (165)
Q Consensus 98 ~~~C~t~K~Gv 108 (165)
.+-||++|+-+
T Consensus 14 gpgcptlkpai 24 (29)
T 1ic9_A 14 GPGCPTLKPAI 24 (29)
T ss_dssp CSCCCCCCTTC
T ss_pred CCCCCccccee
Confidence 55799999875
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=18.53 E-value=1.8e+02 Score=19.96 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=11.2
Q ss_pred eEeeCCCc-hhhhHHHHHHHH
Q 037606 37 LGTYSSDS-TIILGFLSIVAL 56 (165)
Q Consensus 37 ~C~YP~~P-a~~LG~~aa~~L 56 (165)
.|.-|-|. ++.+|+++.+.|
T Consensus 3 ~Cp~~~n~~~Iv~gvi~gill 23 (79)
T 2knc_B 3 MGSKGPDILVVLLSVMGAILL 23 (79)
T ss_dssp SSCSSSCSHHHHHHHHHHHHH
T ss_pred CCCCCCCchhhHHHHHHHHHH
Confidence 57444444 445666666655
No 5
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=9.91 E-value=3.3e+02 Score=22.86 Aligned_cols=22 Identities=36% Similarity=0.942 Sum_probs=15.6
Q ss_pred HHHH-----HHHHHhhcCCCCc-cchhc
Q 037606 121 LFWL-----ICLMLADNARDDY-FDEED 142 (165)
Q Consensus 121 lfwl-----i~lmL~~nar~d~-~~~~~ 142 (165)
+||| |+++-+.|.||.| +++|+
T Consensus 19 ~Fw~ffa~Li~yL~~E~~REGYPl~~~~ 46 (260)
T 1rzh_H 19 SFWIFLAGLIYYLQTENMREGYPLENED 46 (260)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCSCBCTT
T ss_pred HHHHHHHHHHHHHhccccccCCccccCC
Confidence 7776 3555589999999 65544
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=8.91 E-value=1.8e+02 Score=18.10 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=6.5
Q ss_pred Cccc--CCccchhHHH
Q 037606 101 RPTA--KTGLFGGAAF 114 (165)
Q Consensus 101 C~t~--K~GvFgGaAv 114 (165)
||.. .++-.+++-+
T Consensus 3 Cp~~~s~~~~IA~gVV 18 (44)
T 2ks1_B 3 CPTNGPKIPSIATGMV 18 (44)
T ss_dssp CCCCCSCSSSSTHHHH
T ss_pred CCCCCCCcceEEeehh
Confidence 6533 3444444444
No 7
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=8.01 E-value=7.8e+02 Score=19.34 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 037606 71 PMLAVGMLFWPTI 83 (165)
Q Consensus 71 ~~l~~~~l~W~t~ 83 (165)
-+++.+.++|...
T Consensus 94 Ga~~ga~l~~~~~ 106 (234)
T 2o9g_A 94 GGIVAAALLYLIA 106 (234)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444555555544
No 8
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=7.87 E-value=3.4e+02 Score=22.67 Aligned_cols=22 Identities=32% Similarity=0.821 Sum_probs=14.7
Q ss_pred HHHH-----HHHHHhhcCCCCc-cchhc
Q 037606 121 LFWL-----ICLMLADNARDDY-FDEED 142 (165)
Q Consensus 121 lfwl-----i~lmL~~nar~d~-~~~~~ 142 (165)
+||| |+++-+.|.||.| +++|+
T Consensus 18 ~fw~ffa~li~yl~~e~~regypl~~~~ 45 (259)
T 1eys_H 18 AFWLFFFGLIIYLRREDKREGYPLDSNR 45 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCSCBC--
T ss_pred HHHHHHHHHHHHHhccccccCCCcccCc
Confidence 6776 3555589999999 65544
No 9
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=7.60 E-value=8.8e+02 Score=19.59 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 037606 72 MLAVGMLFWPTI 83 (165)
Q Consensus 72 ~l~~~~l~W~t~ 83 (165)
+++.+.++|...
T Consensus 99 A~~ga~l~~~~~ 110 (266)
T 3d9s_A 99 AIAGAGILYGVA 110 (266)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHc
Confidence 344445555443
No 10
>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2x5u_L* 2x5v_L* 4ac5_L* 3t6e_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 2i5n_L* 3t6d_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Probab=7.39 E-value=1.9e+02 Score=24.60 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHhhcCC-----CCCCceeecCceeeEeeCCCchhhhHH
Q 037606 5 GGVLGVKSSILGIAAENRK-----VHPEFHRLQQELSLGTYSSDSTIILGF 50 (165)
Q Consensus 5 V~~LGvlS~ilGf~AE~kK-----~~~g~~i~g~~v~~C~YP~~Pa~~LG~ 50 (165)
||++|++|.++++.|=.-- -.++--+ -..=..|.+|..+|++
T Consensus 32 lG~fGv~s~~~~~~a~~ii~~~~~a~~~wN~----~~~ai~Pp~~~yGL~~ 78 (274)
T 2wjn_L 32 VGFFGVSAIFFIFLGVSLIGYAASQGPTWDP----FAISINPPDLKYGLGA 78 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSSCCCT----TTCCBCCCCGGGTTSC
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHhcCCCCc----eeEeecCCCHHHccCC
Confidence 5778888877776543210 0000000 1134568888888874
Done!