BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037610
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 195/389 (50%), Gaps = 52/389 (13%)
Query: 52 PFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAV 111
PF++ DLG +V + LP + P YAVKCN G+ FDC S +EI+ V
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRV 98
Query: 112 LLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSP 171
+ V P++IIYANPCK +SHI+YA GV++ T D V+EL+K+ HPK+ +++RI S
Sbjct: 99 RGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRI-ST 157
Query: 172 DDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXX 231
DDS A+ L K+GA ++ +L+ A+ + V GVSFHVGS
Sbjct: 158 DDSLARCRLSVKFGA--KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDS 215
Query: 232 XXXXDTAARTSNN------------------KMRKLFKLIFRELL----PGSSLKVISEP 269
D N K ++ +I L P L +++EP
Sbjct: 216 RFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEP 275
Query: 270 GRFFAASAFTLYAQIIGKRVRGELRE--------------YWINDGKFGSLAWVTCDEAI 315
GR++ ASAFTL +I K+V ++ Y++NDG +GS + D A+
Sbjct: 276 GRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAV 335
Query: 316 AKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAY 375
+ PLP K Y S+V+GPTCD D++ + LPE++V +WL+F +MGAY
Sbjct: 336 VR--PLPQREPIPNEK----LYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAY 389
Query: 376 TTACGTNFNGYSTVAI-------PTYVVR 397
T ++FNG+ + I P +VVR
Sbjct: 390 TVVGTSSFNGFQSPTIYYVVSGLPDHVVR 418
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 195/389 (50%), Gaps = 52/389 (13%)
Query: 52 PFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAV 111
PF++ DLG +V + LP + P YAVKCN G+ FDC S +EI+ V
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRV 98
Query: 112 LLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSP 171
+ V P++IIYANPCK +SHI+YA GV++ T D V+EL+K+ HPK+ +++RI S
Sbjct: 99 RGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRI-ST 157
Query: 172 DDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXX 231
DDS A+ L K+GA ++ +L+ A+ + V GVSFHVGS
Sbjct: 158 DDSLARCRLSVKFGA--KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDS 215
Query: 232 XXXXDTAARTSNN------------------KMRKLFKLIFRELL----PGSSLKVISEP 269
D N K ++ +I L P L +++EP
Sbjct: 216 RFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEP 275
Query: 270 GRFFAASAFTLYAQIIGKRVRGELRE--------------YWINDGKFGSLAWVTCDEAI 315
GR++ ASAFTL +I K+V ++ Y++NDG +GS + D A+
Sbjct: 276 GRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAV 335
Query: 316 AKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAY 375
+ PLP K Y S+V+GPTCD D++ + LPE++V +WL+F +MGAY
Sbjct: 336 VR--PLPQREPIPNEK----LYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAY 389
Query: 376 TTACGTNFNGYSTVAI-------PTYVVR 397
T ++FNG+ + I P +VVR
Sbjct: 390 TVVGTSSFNGFQSPTIYYVVSGLPDHVVR 418
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 194/389 (49%), Gaps = 52/389 (13%)
Query: 52 PFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAV 111
PF++ DLG +V + LP + P YAVKCN G+ FDC S +EI+ V
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRV 98
Query: 112 LLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSP 171
+ V P++IIYANPCK +SHI+YA GV++ T D V+EL+K+ HPK+ +++RI S
Sbjct: 99 RGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRI-ST 157
Query: 172 DDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXX 231
DDS A+ L K+GA ++ +L+ A+ + V GVSFHVGS
Sbjct: 158 DDSLARCRLSVKFGA--KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDS 215
Query: 232 XXXXDTAARTSNN------------------KMRKLFKLIFRELL----PGSSLKVISEP 269
D N K ++ +I L P L +++EP
Sbjct: 216 RFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEP 275
Query: 270 GRFFAASAFTLYAQIIGKRVRGELRE--------------YWINDGKFGSLAWVTCDEAI 315
GR++ ASAFTL +I K V ++ Y++NDG +GS + D A+
Sbjct: 276 GRYYVASAFTLAVNVIAKAVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAV 335
Query: 316 AKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAY 375
+ PLP K Y S+V+GPTCD D++ + LPE++V +WL+F +MGAY
Sbjct: 336 VR--PLPQREPIPNEK----LYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAY 389
Query: 376 TTACGTNFNGYSTVAI-------PTYVVR 397
T ++FNG+ + I P +VVR
Sbjct: 390 TVVGTSSFNGFQSPTIYYVVSGLPDHVVR 418
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/389 (33%), Positives = 194/389 (49%), Gaps = 52/389 (13%)
Query: 52 PFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAV 111
PF++ DLG +V + LP + P YAV CN G+ FDC S +EI+ V
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVACNDDWRVLGTLAALGTGFDCASNTEIQRV 98
Query: 112 LLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSP 171
+ V P++IIYANPCK +SHI+YA GV++ T D V+EL+K+ HPK+ +++RI S
Sbjct: 99 RGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRI-ST 157
Query: 172 DDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXX 231
DDS A+ L K+GA ++ +L+ A+ + V GVSFHVGS
Sbjct: 158 DDSLARCRLSVKFGA--KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDS 215
Query: 232 XXXXDTAARTSNN------------------KMRKLFKLIFRELL----PGSSLKVISEP 269
D N K ++ +I L P L +++EP
Sbjct: 216 RFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEP 275
Query: 270 GRFFAASAFTLYAQIIGKRVRGELRE--------------YWINDGKFGSLAWVTCDEAI 315
GR++ ASAFTL +I K+V ++ Y++NDG +GS + D A+
Sbjct: 276 GRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAV 335
Query: 316 AKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAY 375
+ PLP K Y S+V+GPTCD D++ + LPE++V +WL+F +MGAY
Sbjct: 336 VR--PLPQREPIPNEK----LYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAY 389
Query: 376 TTACGTNFNGYSTVAI-------PTYVVR 397
T ++FNG+ + I P +VVR
Sbjct: 390 TVVGTSSFNGFQSPTIYYVVSGLPDHVVR 418
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
pdb|2ON3|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
Length = 461
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 137/379 (36%), Positives = 187/379 (49%), Gaps = 45/379 (11%)
Query: 49 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEI 108
D+ FY+ DLG ++ + + LP + P YAVKCN G+ FDC S++EI
Sbjct: 36 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI 95
Query: 109 EAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRI 168
+ V L V P+RIIYANPCK VS IKYAA+ GV + T DS EL K+ HPK+ L++RI
Sbjct: 96 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRI 155
Query: 169 KSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXX 228
+ DDS A L K+GA + LL+ A+ + VVGVSFHVGS
Sbjct: 156 AT-DDSKAVCRLSVKFGATLRTSRL--LLERAKELNIDVVGVSFHVGSGCTDPETFVQAI 212
Query: 229 XXXXXXXDTAARTSNNKM----------RKLFKLIFREL-----------LPGSS-LKVI 266
D A + + KL F E+ P S +++I
Sbjct: 213 SDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRII 272
Query: 267 SEPGRFFAASAFTLYAQIIGKRV----------RGELRE----YWINDGKFGSLAWVTCD 312
+EPGR++ ASAFTL II K++ E E Y++NDG +GS + D
Sbjct: 273 AEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYD 332
Query: 313 EAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEM 372
A K P K + Y+S+++GPTCD D + LPE+ V DW++F M
Sbjct: 333 HAHVK----PLLQK--RPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENM 386
Query: 373 GAYTTACGTNFNGYSTVAI 391
GAYT A + FNG+ I
Sbjct: 387 GAYTVAAASTFNGFQRPTI 405
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
pdb|2OO0|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
Length = 471
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 137/379 (36%), Positives = 187/379 (49%), Gaps = 45/379 (11%)
Query: 49 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEI 108
D+ FY+ DLG ++ + + LP + P YAVKCN G+ FDC S++EI
Sbjct: 46 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI 105
Query: 109 EAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRI 168
+ V L V P+RIIYANPCK VS IKYAA+ GV + T DS EL K+ HPK+ L++RI
Sbjct: 106 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRI 165
Query: 169 KSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXX 228
+ DDS A L K+GA + LL+ A+ + VVGVSFHVGS
Sbjct: 166 AT-DDSKAVCRLSVKFGATLRTSRL--LLERAKELNIDVVGVSFHVGSGCTDPETFVQAI 222
Query: 229 XXXXXXXDTAARTSNNKM----------RKLFKLIFREL-----------LPGSS-LKVI 266
D A + + KL F E+ P S +++I
Sbjct: 223 SDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRII 282
Query: 267 SEPGRFFAASAFTLYAQIIGKRV----------RGELRE----YWINDGKFGSLAWVTCD 312
+EPGR++ ASAFTL II K++ E E Y++NDG +GS + D
Sbjct: 283 AEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYD 342
Query: 313 EAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEM 372
A K P K + Y+S+++GPTCD D + LPE+ V DW++F M
Sbjct: 343 HAHVK----PLLQK--RPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENM 396
Query: 373 GAYTTACGTNFNGYSTVAI 391
GAYT A + FNG+ I
Sbjct: 397 GAYTVAAASTFNGFQRPTI 415
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
pdb|1D7K|B Chain B, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
Length = 421
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 137/379 (36%), Positives = 186/379 (49%), Gaps = 45/379 (11%)
Query: 49 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEI 108
D+ FY+ DLG ++ + + LP + P YAV CN G+ FDC S++EI
Sbjct: 30 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVXCNDSKAIVKTLAATGTGFDCASKTEI 89
Query: 109 EAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRI 168
+ V L V P+RIIYANPCK VS IKYAA+ GV + T DS EL K+ HPK+ L++RI
Sbjct: 90 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRI 149
Query: 169 KSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXX 228
+ DDS A L K+GA + LL+ A+ + VVGVSFHVGS
Sbjct: 150 AT-DDSKAVCRLSVKFGATLRTSRL--LLERAKELNIDVVGVSFHVGSGCTDPETFVQAI 206
Query: 229 XXXXXXXDTAARTSNNKM----------RKLFKLIFREL-----------LPGSS-LKVI 266
D A + + KL F E+ P S +++I
Sbjct: 207 SDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRII 266
Query: 267 SEPGRFFAASAFTLYAQIIGKRV----------RGELRE----YWINDGKFGSLAWVTCD 312
+EPGR++ ASAFTL II K++ E E Y++NDG +GS + D
Sbjct: 267 AEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYD 326
Query: 313 EAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEM 372
A K P K R Y+S+++GPTCD D + LPE+ V DW++F M
Sbjct: 327 HAHVK----PLLQK--RPKPDERYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENM 380
Query: 373 GAYTTACGTNFNGYSTVAI 391
GAYT A + FNG+ I
Sbjct: 381 GAYTVAAASTFNGFQRPTI 399
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse,
Truncated 37 Residues From The C-Terminus, To 1.6
Angstrom Resolution
Length = 424
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/377 (35%), Positives = 186/377 (49%), Gaps = 49/377 (12%)
Query: 49 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEI 108
D+ FY+ DLG ++ + + LP + P YAVKCN G+ FDC S++EI
Sbjct: 36 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEI 95
Query: 109 EAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRI 168
+ V L V +R+IYANPCK VS IKYAAS GV + T DS EL K+ HPK+ L++RI
Sbjct: 96 QLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRI 155
Query: 169 KSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXX 228
+ DDS A L K+GA + LL+ A+ + V+GVSFHVGS
Sbjct: 156 AT-DDSKAVCRLSVKFGATLKTSRL--LLERAKELNIDVIGVSFHVGSGCTDPDTFVQAV 212
Query: 229 XXXXXXXDTAAR----------------TSNNKMRKLFKLIFRELLPG--------SSLK 264
D A + + K++ F+ I + P S ++
Sbjct: 213 SDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLK--FEEITSVINPALDKYFPSDSGVR 270
Query: 265 VISEPGRFFAASAFTLYAQIIGKRV----------RGELRE----YWINDGKFGSLAWVT 310
+I+EPGR++ ASAFTL II K+ E E Y++NDG +GS +
Sbjct: 271 IIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCIL 330
Query: 311 CDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFS 370
D A K A K + Y+S+++GPTCD D + LPE+ V DW++F
Sbjct: 331 YDHAHVK------ALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFE 384
Query: 371 EMGAYTTACGTNFNGYS 387
MGAYT A + FNG+
Sbjct: 385 NMGAYTVAAASTFNGFQ 401
>pdb|2NV9|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
Length = 372
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 166/368 (45%), Gaps = 30/368 (8%)
Query: 40 STILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSN 99
+ ILK FY+ +V L + P + PHYAVKCN N
Sbjct: 6 NNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTMCDKNVN 65
Query: 100 FDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH 159
FDC S SEI+ V+ + VSP RII+A+ K + + +A GV++ T DS ELDKI +H
Sbjct: 66 FDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYH 125
Query: 160 PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXX 219
P +++RI+ DD A L +K+GA EI LL+ A+ + V+G+SFHVGS
Sbjct: 126 PNCKMILRIRC-DDPNAAVQLGNKFGANE--DEIRHLLEYAKQLDIEVIGISFHVGSGSR 182
Query: 220 XXXXXXXXXXXXXXXXDTAARTSNNK---------------------MRKLFKLIFRELL 258
+ A + M ++
Sbjct: 183 NPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGLHADIDEGELSTYMSDYINDAIKDFF 242
Query: 259 PGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKC 318
P ++ +++EPGRFFA L Q+IGKRVR L EY+ N+ +G + V ++++
Sbjct: 243 PEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSV--- 299
Query: 319 TPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTA 378
P S ++G TCD D + LPEL + DW+ F GAYT
Sbjct: 300 ---PTPQLLRDVPDDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNV 356
Query: 379 CGTNFNGY 386
T+FNG+
Sbjct: 357 LTTSFNGF 364
>pdb|2NVA|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
Length = 372
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 166/368 (45%), Gaps = 30/368 (8%)
Query: 40 STILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSN 99
+ ILK FY+ +V L + P + PHYAVKCN N
Sbjct: 6 NNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTMCDKNVN 65
Query: 100 FDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH 159
FDC S SEI+ V+ + VSP RII+A+ K + + +A GV++ T DS ELDKI +H
Sbjct: 66 FDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYH 125
Query: 160 PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXX 219
P +++RI+ DD A L +K+GA EI LL+ A+ + V+G+SFHVGS
Sbjct: 126 PNCKMILRIRC-DDPNATVQLGNKFGANE--DEIRHLLEYAKQLDIEVIGISFHVGSGSR 182
Query: 220 XXXXXXXXXXXXXXXXDTAARTSNNK---------------------MRKLFKLIFRELL 258
+ A + M ++
Sbjct: 183 NPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGLHADIDEGELSTYMSDYINDAIKDFF 242
Query: 259 PGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKC 318
P ++ +++EPGRFFA L Q+IGKRVR L EY+ N+ +G + V ++++
Sbjct: 243 PEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSV--- 299
Query: 319 TPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTA 378
P S ++G TCD D + LPEL + DW+ F GAYT
Sbjct: 300 ---PTPQLLRDVPDDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNV 356
Query: 379 CGTNFNGY 386
T+FNG+
Sbjct: 357 LTTSFNGF 364
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
pdb|3BTN|B Chain B, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
Length = 448
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 170/376 (45%), Gaps = 49/376 (13%)
Query: 53 FYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVL 112
F++ DLG +V ++ + + I P Y VKCN G+ F C S++E+ V
Sbjct: 40 FFVGDLGKIVKKHSQWQTVVAQIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEMALVQ 99
Query: 113 LLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPD 172
L VSP+ II+ +PCK VS IKYAA VGVN+ T D+ EL KI HP + +L+ I + D
Sbjct: 100 ELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKVLLHIATED 159
Query: 173 DSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXX 232
+ G + D G + LL+ A+ + ++GV FHV S
Sbjct: 160 NIGGE---DGNMKFGTTLKNCRHLLECAKELDVQIIGVKFHVSSACKEYQVYVHALSDAR 216
Query: 233 XXXDTAARTS----------------------NNKMRKLFKLIFRELLPGSSLKVISEPG 270
D A N+ + L + F E GS +++ISEPG
Sbjct: 217 CVFDMAGEFGFTMNMLDIGGGFTGTEIQLEEVNHVISPLLDIYFPE---GSGIQIISEPG 273
Query: 271 RFFAASAFTLYAQIIGKRVRGELR---------------EYWINDGKFGSLAWVTCDEAI 315
++ +SAFTL II K+V + Y++NDG +GS A ++
Sbjct: 274 SYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFVYYMNDGVYGSFASKLSED-- 331
Query: 316 AKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAY 375
+P K + S+++GP+CD D++ LPEL V DWL+F MGA
Sbjct: 332 --LNTIP--EVHKKYKEDEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGAD 387
Query: 376 TTACGTNFNGYSTVAI 391
+ + FN + AI
Sbjct: 388 SFHEPSAFNDFQRPAI 403
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 178/378 (47%), Gaps = 32/378 (8%)
Query: 33 ELTEFMQSTILKRQ-EFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXX 91
E+ EF + I + + E + F++ D V N+P + P +AVKCN
Sbjct: 7 EVKEFALNLISQFEPENQPLGFWIFDTEGVEKAVERWKKNMPTVRPCFAVKCNPEPHLVK 66
Query: 92 XXXXXGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEE 151
G FDC S +EI+ VL L +P+ I Y+ KP + + A+ +G+N T VDS++E
Sbjct: 67 LLGELGCGFDCASLNEIKEVLDLGFNPEDITYSQTFKPYNQLIEASHLGINHTIVDSIDE 126
Query: 152 LDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVS 211
+ KI + PK ++IRI +D+ A + K+G H E+ +LK + GL++ GV
Sbjct: 127 VQKIAKYAPKMGIMIRIME-NDTSAGHVFGEKFGL--HDDEVEIVLKEIKDKGLNLDGVH 183
Query: 212 FHVGSEXXXXXXXXXXXXXXXXXXDTAAR-----------------TSNNKMRKLFKLIF 254
FHVGS+ A + + +
Sbjct: 184 FHVGSDSHNSEVFTKALTKARNTVTLAEQFGMKPYLIDIGGGFSQVAPFEEFAATIEKTI 243
Query: 255 RELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVR---GELR-EYWINDGKFGSLAWVT 310
+EL + I+EPGR+ A++AF L + + GKRVR G+ + EY DG GS
Sbjct: 244 KELEFPERTRFIAEPGRYMASNAFHLVSSLHGKRVRIQNGKKQIEYTSGDGLHGSFGCCI 303
Query: 311 CDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEV-NDWLVF 369
E C + + T+ Y S ++GP+C+ D+V T +LPE+E DWL+F
Sbjct: 304 WFEKQKSCECITQKVNEN-----TKMYESIIYGPSCNGSDKVAT-QELPEMEPGKDWLLF 357
Query: 370 SEMGAYTTACGTNFNGYS 387
MGAYT + TNFNG+
Sbjct: 358 PNMGAYTISMATNFNGFE 375
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLJ|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLK|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
pdb|2PLK|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
Length = 419
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 170/376 (45%), Gaps = 38/376 (10%)
Query: 52 PFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAV 111
P L+D V+ Y + + LP + HYA+K G++FD + E+E V
Sbjct: 56 PLLLLDCDVIRQQYRALKNALPNVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELV 115
Query: 112 LLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSP 171
V D I+ +P K + I+ A + G N+ VD++ EL+K + + +LL+R+ S
Sbjct: 116 ASEGVPADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRL-SF 174
Query: 172 DDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXX 231
+S A L K+G P++ + +++ A+ + + G+SFHVGS+
Sbjct: 175 RNSEAFADLSKKFGCS--PEQALVIIETAKEWNIRIKGLSFHVGSQTTNPNKYVEAIHTC 232
Query: 232 XXXXDTAARTSNNKMRKL-----FKLIFRE-----------------LLPGSSLKVISEP 269
+ + L F + + + LLP ++ V++EP
Sbjct: 233 RHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLLP-ETVHVLAEP 291
Query: 270 GRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTT 329
GRF A A T A ++G+ R Y+++DG +GS + + D+A TT
Sbjct: 292 GRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDA---------RYPLTT 342
Query: 330 SKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGY--- 386
K S + GPTCD+ D + LP+L D ++ MGAYT+A T+FN +
Sbjct: 343 IKQGGELIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRA 402
Query: 387 STVAIPTYVVRSNQTL 402
T+A+ +V S + +
Sbjct: 403 QTIALNEFVASSERMI 418
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 45/338 (13%)
Query: 79 YAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138
YA+K N S DC S EI+ L + P RI+++ K I+ A
Sbjct: 63 YALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALK 122
Query: 139 VGVNLTTVDSVEELDKI----RNWHPKSDLLIRIKSPDDSGAKYPL------DSKYGAGH 188
+ + V+S EL I ++ K+ + IRI +P+ +P ++K+G G
Sbjct: 123 LNILFLNVESFMELKTIETIAQSLGIKARISIRI-NPNIDAKTHPYISTGLKENKFGVG- 180
Query: 189 HPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDT----------- 237
+ + L A +++ L V V FH+GS+ +
Sbjct: 181 EKEALEMFLWAKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFF 240
Query: 238 ------AARTSNNKMRKLFKLI--FRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRV 289
N + KL+ L G L +I EPGR A + L Q++ ++
Sbjct: 241 DVGGGIGVSYENEETIKLYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEK- 299
Query: 290 RGELREYWINDGKFGSL---AWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTC 346
+ + + + I D + AI TP SKG V GP C
Sbjct: 300 KAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITP---------SKG-REISPCDVVGPVC 349
Query: 347 DAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFN 384
++ D LPELE D + ++GAY ++ + +N
Sbjct: 350 ESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYN 387
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 45/338 (13%)
Query: 79 YAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138
YA+K N S DC S EI+ L + P RI+++ K I+ A
Sbjct: 63 YALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALK 122
Query: 139 VGVNLTTVDSVEELDKI----RNWHPKSDLLIRIKSPDDSGAKYPL------DSKYGAGH 188
+ + V+S EL I ++ K+ + IRI +P+ +P ++K+G G
Sbjct: 123 LNILFLNVESFMELKTIETIAQSLGIKARISIRI-NPNIDAKTHPYLSTGLKENKFGVG- 180
Query: 189 HPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDT----------- 237
+ + L A +++ L V V FH+GS+ +
Sbjct: 181 EKEALEMFLWAKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFF 240
Query: 238 ------AARTSNNKMRKLFKLI--FRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRV 289
N + KL+ L G L +I EPGR A + L Q++ ++
Sbjct: 241 DVGGGIGVSYENEETIKLYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEK- 299
Query: 290 RGELREYWINDGKFGSL---AWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTC 346
+ + + + I D + AI TP SKG V GP C
Sbjct: 300 KAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITP---------SKG-REISPCDVVGPVC 349
Query: 347 DAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFN 384
++ D LPELE D + ++GAY ++ + +N
Sbjct: 350 ESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYN 387
>pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae
Length = 441
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 87/367 (23%), Positives = 139/367 (37%), Gaps = 53/367 (14%)
Query: 76 HPH---YAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSH 132
+PH YAVK N GS FD S E+E VL P +++++ K +
Sbjct: 76 YPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAE 135
Query: 133 IKYAASVGVNLTTVDSVEELDKIRN----WHPKSDLLIRIKSPDDSGAKYPL------DS 182
+K A + + V+S EL ++ K+ + +RI +PD +P D+
Sbjct: 136 MKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRI-NPDVDAKTHPYISTGLRDN 194
Query: 183 KYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTS 242
K+G + L A L V G+ H+GS+ D+ +
Sbjct: 195 KFGITFDRAAQVYRL-AHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDS-LKAE 252
Query: 243 NNKMRKL-----FKLIFRELLPGS----------------SLKVISEPGRFFAASAFTLY 281
+R L +++R+ LP L++I EPGR AA+A L
Sbjct: 253 GIHIRHLDVGGGLGVVYRDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLV 312
Query: 282 AQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTV 341
++ + E + + I D L +A PL +G +TY+ +
Sbjct: 313 TKVEFLK-HTEHKNFAIIDAAMNDLIRPALYQAWQDIIPL------RPRQGEAQTYD--L 363
Query: 342 FGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAI------PTYV 395
GP C+ D + L L+ D L GAY +N+N VA TY+
Sbjct: 364 VGPVCETSDFLGKDRDLV-LQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVDGNKTYL 422
Query: 396 VRSNQTL 402
VR + L
Sbjct: 423 VRQREEL 429
>pdb|1KNW|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase
pdb|1KO0|A Chain A, Crystal Structure Of A D,L-Lysine Complex Of
Diaminopimelate Decarboxylase
Length = 425
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 260 GSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCT 319
G +K+ EPGRF A + L Q+ + G R + + D F L + +
Sbjct: 260 GHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGS-RHFVLVDAGFNDLMRPAMYGSYHHIS 318
Query: 320 PLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHK--------LPELEVNDWLVFSE 371
L ++ S T + V GP C++ D VFT + LPE++ D+LV +
Sbjct: 319 AL---AADGRSLEHAPTVETVVAGPLCESGD-VFTQQEGGNVETRALPEVKAGDYLVLHD 374
Query: 372 MGAYTTACGTNFN 384
GAY + +N+N
Sbjct: 375 TGAYGASMSSNYN 387
>pdb|2J66|A Chain A, Structural Characterisation Of Btrk Decarboxylase From
Butirosin Biosynthesis
Length = 428
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 4/129 (3%)
Query: 50 EVPFYLMDLGVVVSLYNHMISNL-PMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEI 108
E PFYL D + + Y + S P I + ++K N G + S E+
Sbjct: 16 ETPFYLYDGDFIEAHYRQLRSRTNPAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGEL 75
Query: 109 EAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRI 168
S + II++ P K S ++ A G+ +SVEEL I K + R+
Sbjct: 76 ALARHAGFSAENIIFSGPGKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARV 135
Query: 169 K---SPDDS 174
+PD S
Sbjct: 136 AIRINPDKS 144
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus
pdb|2P3E|B Chain B, Crystal Structure Of Aq1208 From Aquifex Aeolicus
Length = 420
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/336 (19%), Positives = 119/336 (35%), Gaps = 41/336 (12%)
Query: 79 YAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138
YAVK N G+ D S E+ + P+RI+YA K + A
Sbjct: 62 YAVKANFNPHLVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVD 121
Query: 139 VGVNLTTVDSVEELDKIR----NWHPKSDLLIRIKSPDDSGAKYPL------DSKYGAGH 188
+ + V+S +ELD + K+ + IR+ +PD +P SK+G
Sbjct: 122 SEILMFNVESRQELDVLNEIAGKLGKKARIAIRV-NPDVDPKTHPYIATGMQKSKFGVDI 180
Query: 189 HPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTS------ 242
+ A++ L +VG+ H+GS+ ++ +
Sbjct: 181 REAQ-KEYEYASKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYL 239
Query: 243 --NNKMRKLFKLIFRELLPGS------------SLKVISEPGRFFAASAFTLYAQIIGKR 288
+ +K +E P K+I EPGR +A L Q+ +
Sbjct: 240 DIGGGLGIKYKPEDKEPAPQDLADLLKDLLENVKAKIILEPGRSIMGNAGILITQVQFLK 299
Query: 289 VRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDA 348
+G + + I D L + A P+ + + + GP C+
Sbjct: 300 DKGS-KHFIIVDAGMNDLIRPSIYNAYHHIIPVETKER--------KKVVADIVGPICET 350
Query: 349 FDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFN 384
D + ++ E++ ++L GAY A +++N
Sbjct: 351 GDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYN 386
>pdb|2YXX|A Chain A, Crystal Structure Analysis Of Diaminopimelate
Decarboxylate (Lysa)
Length = 386
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/346 (21%), Positives = 124/346 (35%), Gaps = 32/346 (9%)
Query: 77 PHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYA 136
P +AVK N G D ++ E+ A L V +++ K ++
Sbjct: 41 PTFAVKANNNPVLLKILREEGFGXDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQXEHF 100
Query: 137 ASVGVNLTTVDSVEELDKIRNWHPKS-DLLIRIKSPDDSGAKYPLDSKYGAGHH---PQE 192
V + VDS EE + R +P+ + IR+ +P+ +P S H P E
Sbjct: 101 LREDVRIVNVDSFEEXEIWRELNPEGVEYFIRV-NPEVDAKTHPHISTGLKKHKFGIPLE 159
Query: 193 IMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTS---------N 243
+ S ++ G+ H+GS+ + N
Sbjct: 160 DLDSFXERFRS-XNIRGLHVHIGSQITRVEPFVEAFSKVVRASERYGFEEINIGGGWGIN 218
Query: 244 NKMRKLFKLIFRE-LLPGSSL--KVISEPGRFFAA-SAFTLYAQIIGKRVRGELREYWIN 299
+L +RE ++P +VI E GR+ A S + L ++ KR + + +
Sbjct: 219 YSGEELDLSSYREKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHN--KAFVVV 276
Query: 300 DGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLP 359
DG L I + F K + + V GP C++ D + +LP
Sbjct: 277 DGGXNVL--------IRPALYSAYHRIFVLGKQ-GKEXRADVVGPLCESGDVIAYDRELP 327
Query: 360 ELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSNQTLLAI 405
E+E D + GAY N+N ST +VR N + I
Sbjct: 328 EVEPGDIIAVENAGAYGYTXSNNYN--STTRPAEVLVRENGRISLI 371
>pdb|3VAB|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Brucella Melitensis Bound To Plp
pdb|3VAB|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From
Brucella Melitensis Bound To Plp
Length = 443
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 73/371 (19%), Positives = 131/371 (35%), Gaps = 57/371 (15%)
Query: 79 YAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138
YA+ N G+ D S+ EI L + +RI+++ K + +A
Sbjct: 79 YALXANSNQAVLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALE 138
Query: 139 VGVNLTTVDSVEELDKIRNWHPKSDLL----IRIKSPDDSGAKYPL-----DSKYGAGHH 189
G+ V+S EL+ + + + +RI D+ + ++K+G
Sbjct: 139 AGIYCFNVESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGI--- 195
Query: 190 PQEIMPLLKAAEAS--GLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMR 247
P++ A AS GL+VVG+ H+GS+ +N +R
Sbjct: 196 PRDKARAAYARAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHN-IR 254
Query: 248 KL----------------------FKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQII 285
+ + I + + LK + EPGR +A L ++I
Sbjct: 255 HVDVGGGLGIPYRTPNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVI 314
Query: 286 GKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPT 345
+ G+ + + I D L T +A P+ + + GP
Sbjct: 315 FVK-EGDAKNFVIVDAAMNDLIRPTLYDAFHDIRPVIMPNDNAPR------IRADFVGPV 367
Query: 346 CDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPT--------YVVR 397
C+ D + ++ + D + GAY + +N S + IP +VVR
Sbjct: 368 CETGDYLGLDREVAKPAPGDLIAICTTGAYGAVLSSTYN--SRLLIPEVLGDGERYHVVR 425
Query: 398 SNQT---LLAI 405
+T LLA+
Sbjct: 426 PRRTYEELLAL 436
>pdb|1TWI|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|C Chain C, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|D Chain D, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
Length = 434
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 12/150 (8%)
Query: 79 YAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138
YA K N G D S E+ L +V +I++ CK I
Sbjct: 66 YAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIE 125
Query: 139 VGVNLTTVDSVEEL----DKIRNWHPKSDLLIRIKSPDDSGAKYPLDS------KYGAGH 188
+ VDS+ EL + + +++ RI +P+ + +P S K+G
Sbjct: 126 ANIRAFNVDSISELILINETAKELGETANVAFRI-NPNVNPKTHPKISTGLKKNKFGLDV 184
Query: 189 HPQEIMPLLKAA-EASGLSVVGVSFHVGSE 217
M +K A E ++VVGV H+GS+
Sbjct: 185 ESGIAMKAIKMALEMEYVNVVGVHCHIGSQ 214
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 340 TVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSN 399
++ G C++ D +L ++EV D L ++GAY + N+N P V+ S
Sbjct: 352 SIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGR---PRMVLTSK 408
Query: 400 QTLLAI 405
+ + I
Sbjct: 409 KGVFLI 414
>pdb|1HKV|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
pdb|1HKV|B Chain B, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
Length = 453
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 10/150 (6%)
Query: 78 HYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAA 137
HYA K G D + E+ L P+RI K VS + A
Sbjct: 68 HYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAV 127
Query: 138 SVGVNLTTVDSVEELDKIRNWHPKS----DLLIRIKSPDDSGAKYPL-----DSKYGAGH 188
GV VDS+ E++++ ++ D+L+R+ ++ + D K+G
Sbjct: 128 KAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSV 187
Query: 189 HPQEIMPLLKAAEASG-LSVVGVSFHVGSE 217
M ++ A+ L +VG+ H+GS+
Sbjct: 188 ASGAAMAAVRRVFATDHLRLVGLHSHIGSQ 217
>pdb|1TUF|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschi
pdb|1TUF|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschi
Length = 434
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 12/150 (8%)
Query: 79 YAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138
YA N G D S E+ L +V +I++ CK I
Sbjct: 66 YAYXANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIE 125
Query: 139 VGVNLTTVDSVEEL----DKIRNWHPKSDLLIRIKSPDDSGAKYPLDS------KYGAGH 188
+ VDS+ EL + + +++ RI +P+ + +P S K+G
Sbjct: 126 ANIRAFNVDSISELILINETAKELGETANVAFRI-NPNVNPKTHPKISTGLKKNKFGLDV 184
Query: 189 HPQEIMPLLKAA-EASGLSVVGVSFHVGSE 217
M +K A E ++VVGV H+GS+
Sbjct: 185 ESGIAMKAIKMALEMEYVNVVGVHCHIGSQ 214
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 340 TVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSN 399
++ G C++ D +L ++EV D L ++GAY + N+N P V+ S
Sbjct: 352 SIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGR---PRMVLTSK 408
Query: 400 QTLLAI 405
+ + I
Sbjct: 409 KGVFLI 414
>pdb|2O0T|A Chain A, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|B Chain B, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|C Chain C, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|D Chain D, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
Length = 467
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 10/150 (6%)
Query: 78 HYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAA 137
HYA G D + E+ L P+RI K VS + A
Sbjct: 70 HYAAXAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAV 129
Query: 138 SVGVNLTTVDSVEELDKIRNWHPKS----DLLIRIKSPDDSGAKYPL-----DSKYGAGH 188
GV VDS+ E++++ ++ D+L+R+ ++ + D K+G
Sbjct: 130 KAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSV 189
Query: 189 HPQEIMPLLKAAEASG-LSVVGVSFHVGSE 217
M ++ A+ L +VG+ H+GS+
Sbjct: 190 ASGAAMAAVRRVFATDHLRLVGLHSHIGSQ 219
>pdb|1HKW|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
pdb|1HKW|B Chain B, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
Length = 453
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 78 HYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAA 137
HYA K G D + E+ L P+RI K VS + A
Sbjct: 68 HYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAV 127
Query: 138 SVGVNLTTVDSVEELDKIRNWHPKS----DLLIRI 168
GV VDS E++++ ++ D+L+R+
Sbjct: 128 KAGVGHIVVDSXTEIERLDAIAGEAGIVQDVLVRL 162
>pdb|3NCX|A Chain A, Crystal Structure Of Ehec O157:h7 Intimin Mutant
pdb|3NCX|B Chain B, Crystal Structure Of Ehec O157:h7 Intimin Mutant
Length = 189
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 284 IIGKRVRGELREYWINDGKF--------GSLAWVTCDEAIA 316
IIG VRGEL W+ G+F G+ +W + + +IA
Sbjct: 19 IIGNNVRGELPNIWLQYGQFKLKASGGDGTYSWYSENTSIA 59
>pdb|2ZQK|A Chain A, Crystal Structure Of Intimin-Tir68 Complex
pdb|2ZQK|B Chain B, Crystal Structure Of Intimin-Tir68 Complex
pdb|3NCW|A Chain A, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|B Chain B, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|C Chain C, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|D Chain D, Crystal Structure Of Ehec O157:h7 Intimin
Length = 189
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 284 IIGKRVRGELREYWINDGKF--------GSLAWVTCDEAIA 316
IIG VRGEL W+ G+F G+ +W + + +IA
Sbjct: 19 IIGNNVRGELPNIWLQYGQFKLKASGGDGTYSWYSENTSIA 59
>pdb|2ZWK|A Chain A, Crystal Structure Of Intimin-Tir90 Complex
pdb|2ZWK|C Chain C, Crystal Structure Of Intimin-Tir90 Complex
pdb|2ZWK|E Chain E, Crystal Structure Of Intimin-Tir90 Complex
Length = 184
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 284 IIGKRVRGELREYWINDGKF--------GSLAWVTCDEAIA 316
IIG VRGEL W+ G+F G+ +W + + +IA
Sbjct: 14 IIGNNVRGELPNIWLQYGQFKLKASGGDGTYSWYSENTSIA 54
>pdb|3FJU|A Chain A, Ascaris Suum Carboxypeptidase Inhibitor In Complex With
Human Carboxypeptidase A1
Length = 307
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 23/125 (18%)
Query: 104 SRSEIEAVLLLDVSPDRIIYA---------NPCKPVSHIKYAASVGVNLTTVDSVEELDK 154
+RS L + V P+R A NPC H K+A S + VD V++
Sbjct: 128 TRSHTAGSLCIGVDPNRNWDAGFGLSGASSNPCSETYHGKFANSEVEVKSIVDFVKDHGN 187
Query: 155 IRNW---HPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVS 211
I+ + H S LL+ YP K E+ L KAA + S+ G
Sbjct: 188 IKAFISIHSYSQLLM-----------YPYGYKTEPVPDQDELDQLSKAAVTALASLYGTK 236
Query: 212 FHVGS 216
F+ GS
Sbjct: 237 FNYGS 241
>pdb|2V77|A Chain A, Crystal Structure Of Human Carboxypeptidase A1
pdb|2V77|B Chain B, Crystal Structure Of Human Carboxypeptidase A1
Length = 309
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 23/125 (18%)
Query: 104 SRSEIEAVLLLDVSPDRIIYA---------NPCKPVSHIKYAASVGVNLTTVDSVEELDK 154
+RS L + V P+R A NPC H K+A S + VD V++
Sbjct: 129 TRSHTAGSLCIGVDPNRNWDAGFGLSGASSNPCSETYHGKFANSEVEVKSIVDFVKDHGN 188
Query: 155 IRNW---HPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVS 211
I+ + H S LL+ YP K E+ L KAA + S+ G
Sbjct: 189 IKAFISIHSYSQLLM-----------YPYGYKTEPVPDQDELDQLSKAAVTALASLYGTK 237
Query: 212 FHVGS 216
F+ GS
Sbjct: 238 FNYGS 242
>pdb|3NM8|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
pdb|3NM8|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
pdb|3NPY|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Soaked In Cuso4
pdb|3NPY|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Soaked In Cuso4
pdb|3NQ0|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Crystallized In The Absence Of Zinc
pdb|3NQ0|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Crystallized In The Absence Of Zinc
pdb|3NQ1|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
In Complex With Inhibitor Kojic Acid
pdb|3NQ1|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
In Complex With Inhibitor Kojic Acid
pdb|3NTM|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Crystallized In The Absence Of Zinc, Partial Occupancy
Of Cub
pdb|3NTM|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Crystallized In The Absence Of Zinc, Partial Occupancy
Of Cub
pdb|4D87|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
In Complex With Sds
pdb|4D87|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
In Complex With Sds
Length = 303
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 293 LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEV 352
++++ ++ G F + W T DE + P S GL R + +T PT D+V
Sbjct: 121 IKDFIVDTGPFAAGRWTTIDE---QGNP---------SGGLKRNFGATKEAPTLPTRDDV 168
Query: 353 FTGHKLPELEVNDWLVFSE 371
K+ + + W + S+
Sbjct: 169 LNALKITQYDTPPWDMTSQ 187
>pdb|4HD7|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218g Mutant Soaked In Cuso4
pdb|4HD7|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218g Mutant Soaked In Cuso4
Length = 303
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 293 LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEV 352
++++ ++ G F + W T DE + P S GL R + +T PT D+V
Sbjct: 121 IKDFIVDTGPFAAGRWTTIDE---QGNP---------SGGLKRNFGATKEAPTLPTRDDV 168
Query: 353 FTGHKLPELEVNDWLVFSE 371
K+ + + W + S+
Sbjct: 169 LNALKITQYDTPPWDMTSQ 187
>pdb|3NQ5|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
R209h Mutant
pdb|3NQ5|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
R209h Mutant
Length = 303
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 293 LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEV 352
++++ ++ G F + W T DE + P S GL R + +T PT D+V
Sbjct: 121 IKDFIVDTGPFAAGRWTTIDE---QGNP---------SGGLKRNFGATKEAPTLPTRDDV 168
Query: 353 FTGHKLPELEVNDWLVFSE 371
K+ + + W + S+
Sbjct: 169 LNALKITQYDTPPWDMTSQ 187
>pdb|4HD4|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218f Mutant
pdb|4HD4|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218f Mutant
pdb|4HD6|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218f Mutant Soaked In Cuso4
pdb|4HD6|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218f Mutant Soaked In Cuso4
Length = 303
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 293 LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEV 352
++++ ++ G F + W T DE + P S GL R + +T PT D+V
Sbjct: 121 IKDFIVDTGPFAAGRWTTIDE---QGNP---------SGGLKRNFGATKEAPTLPTRDDV 168
Query: 353 FTGHKLPELEVNDWLVFSE 371
K+ + + W + S+
Sbjct: 169 LNALKITQYDTPPWDMTSQ 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,379,760
Number of Sequences: 62578
Number of extensions: 435633
Number of successful extensions: 967
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 55
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)