Query 037610
Match_columns 405
No_of_seqs 209 out of 1591
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0622 Ornithine decarboxylas 100.0 1E-73 2.2E-78 541.4 36.6 368 24-404 20-431 (448)
2 cd06831 PLPDE_III_ODC_like_AZI 100.0 3.8E-68 8.3E-73 528.6 40.1 343 47-402 10-387 (394)
3 COG0019 LysA Diaminopimelate d 100.0 1.5E-66 3.2E-71 512.8 37.2 334 47-393 24-393 (394)
4 cd06840 PLPDE_III_Bif_AspK_Dap 100.0 6.9E-63 1.5E-67 488.3 38.6 333 47-393 9-367 (368)
5 cd06830 PLPDE_III_ADC Type III 100.0 1.9E-61 4.1E-66 484.1 36.4 334 47-393 2-408 (409)
6 cd00622 PLPDE_III_ODC Type III 100.0 1E-60 2.3E-65 473.2 41.1 334 49-392 1-360 (362)
7 PLN02537 diaminopimelate decar 100.0 2.2E-60 4.9E-65 477.7 39.0 334 49-395 17-386 (410)
8 TIGR01048 lysA diaminopimelate 100.0 2.4E-60 5.2E-65 479.1 38.8 347 30-395 12-396 (417)
9 cd06836 PLPDE_III_ODC_DapDC_li 100.0 1.9E-60 4.2E-65 472.9 37.1 332 52-393 4-376 (379)
10 cd06828 PLPDE_III_DapDC Type I 100.0 5.4E-60 1.2E-64 470.1 36.7 334 48-393 1-372 (373)
11 PRK11165 diaminopimelate decar 100.0 4.7E-59 1E-63 468.1 38.8 334 47-394 23-397 (420)
12 cd06839 PLPDE_III_Btrk_like Ty 100.0 2.5E-58 5.3E-63 459.5 39.2 335 47-393 4-381 (382)
13 TIGR03099 dCO2ase_PEP1 pyridox 100.0 2.5E-58 5.5E-63 461.6 38.7 333 48-393 22-397 (398)
14 cd06810 PLPDE_III_ODC_DapDC_li 100.0 3.6E-58 7.8E-63 456.2 38.7 332 52-392 2-366 (368)
15 cd06843 PLPDE_III_PvsE_like Ty 100.0 4.5E-58 9.8E-63 456.5 39.1 335 52-393 3-376 (377)
16 cd06841 PLPDE_III_MccE_like Ty 100.0 6.9E-58 1.5E-62 455.5 36.5 330 47-394 4-375 (379)
17 cd06829 PLPDE_III_CANSDC Type 100.0 4.7E-58 1E-62 450.7 33.7 320 52-394 2-345 (346)
18 PRK08961 bifunctional aspartat 100.0 1.4E-57 2.9E-62 492.6 39.8 334 47-394 500-859 (861)
19 TIGR01047 nspC carboxynorsperm 100.0 9.2E-58 2E-62 453.1 34.1 329 49-394 2-359 (380)
20 cd06842 PLPDE_III_Y4yA_like Ty 100.0 5.8E-57 1.3E-61 453.6 33.3 330 47-393 7-422 (423)
21 PRK05354 arginine decarboxylas 100.0 6.8E-43 1.5E-47 361.2 37.2 354 30-396 46-564 (634)
22 TIGR01273 speA arginine decarb 100.0 4.7E-41 1E-45 347.4 38.5 353 30-397 39-558 (624)
23 PF02784 Orn_Arg_deC_N: Pyrido 100.0 1.2E-38 2.6E-43 300.0 21.2 218 57-276 1-251 (251)
24 PLN02439 arginine decarboxylas 100.0 1.4E-36 3E-41 310.7 34.0 334 54-396 2-490 (559)
25 cd00430 PLPDE_III_AR Type III 100.0 3.7E-34 8E-39 284.0 29.9 297 52-372 2-332 (367)
26 TIGR00492 alr alanine racemase 100.0 3.1E-33 6.7E-38 277.2 28.6 296 53-372 4-336 (367)
27 PRK00053 alr alanine racemase; 100.0 4.5E-32 9.7E-37 268.5 30.4 298 52-372 4-332 (363)
28 cd06827 PLPDE_III_AR_proteobac 100.0 7.1E-32 1.5E-36 265.2 29.0 292 53-372 3-323 (354)
29 PRK13340 alanine racemase; Rev 100.0 1.1E-31 2.4E-36 268.9 30.3 295 52-372 41-370 (406)
30 cd06826 PLPDE_III_AR2 Type III 100.0 2E-31 4.2E-36 263.7 29.2 296 52-372 2-330 (365)
31 COG0787 Alr Alanine racemase [ 100.0 2.5E-30 5.5E-35 249.8 27.5 295 52-372 4-328 (360)
32 cd06825 PLPDE_III_VanT Type II 100.0 1.8E-29 3.9E-34 249.6 29.3 297 52-372 2-333 (368)
33 PRK03646 dadX alanine racemase 100.0 2.6E-28 5.6E-33 239.9 28.9 290 53-372 5-324 (355)
34 PRK11930 putative bifunctional 100.0 5.7E-27 1.2E-31 254.5 27.8 315 30-372 442-789 (822)
35 cd06808 PLPDE_III Type III Pyr 100.0 1.4E-26 2.9E-31 212.0 21.4 174 61-243 1-180 (211)
36 cd06815 PLPDE_III_AR_like_1 Ty 99.9 6.7E-26 1.4E-30 223.4 23.1 299 52-383 2-347 (353)
37 cd06812 PLPDE_III_DSD_D-TA_lik 99.9 8.6E-25 1.9E-29 217.5 27.4 237 47-303 3-275 (374)
38 cd06819 PLPDE_III_LS_D-TA Type 99.9 2.2E-25 4.8E-30 220.5 21.7 224 47-288 4-267 (358)
39 cd06811 PLPDE_III_yhfX_like Ty 99.9 1.1E-23 2.4E-28 209.2 30.4 247 34-289 10-288 (382)
40 COG1166 SpeA Arginine decarbox 99.9 3.1E-22 6.8E-27 196.5 25.6 252 32-290 64-378 (652)
41 cd06818 PLPDE_III_cryptic_DSD 99.9 9.9E-23 2.1E-27 202.9 20.7 219 49-280 2-251 (382)
42 cd06813 PLPDE_III_DSD_D-TA_lik 99.9 1.1E-21 2.5E-26 195.5 27.6 164 47-216 8-184 (388)
43 cd06820 PLPDE_III_LS_D-TA_like 99.9 1.1E-21 2.5E-26 193.6 24.1 236 49-304 2-269 (353)
44 cd06821 PLPDE_III_D-TA Type II 99.9 1.9E-21 4.1E-26 192.6 23.6 239 47-305 6-278 (361)
45 PF00278 Orn_DAP_Arg_deC: Pyri 99.9 1.1E-21 2.4E-26 162.7 10.1 106 279-392 1-114 (116)
46 cd07376 PLPDE_III_DSD_D-TA_lik 99.8 2.2E-18 4.7E-23 169.7 21.2 228 60-306 1-264 (345)
47 cd06817 PLPDE_III_DSD Type III 99.8 3.6E-18 7.9E-23 169.7 22.8 226 47-288 3-281 (389)
48 cd06814 PLPDE_III_DSD_D-TA_lik 99.8 3.9E-18 8.5E-23 169.2 19.4 155 47-216 6-179 (379)
49 PF01168 Ala_racemase_N: Alani 99.8 3.8E-17 8.2E-22 150.4 17.1 202 56-275 1-215 (218)
50 cd00635 PLPDE_III_YBL036c_like 99.8 1.1E-16 2.3E-21 148.0 20.1 180 56-249 3-195 (222)
51 cd06824 PLPDE_III_Yggs_like Py 99.6 1.5E-13 3.2E-18 127.1 19.1 170 59-243 7-191 (224)
52 TIGR00044 pyridoxal phosphate 99.5 1.8E-12 3.9E-17 120.2 20.9 155 74-242 28-192 (229)
53 COG3616 Predicted amino acid a 99.4 7E-12 1.5E-16 122.0 16.8 162 47-217 15-184 (368)
54 COG3457 Predicted amino acid r 99.4 1.3E-11 2.9E-16 114.9 16.7 293 52-371 4-332 (353)
55 PF00842 Ala_racemase_C: Alani 98.4 3.4E-07 7.4E-12 76.9 4.1 88 277-373 1-96 (129)
56 cd06822 PLPDE_III_YBL036c_euk 98.3 0.00021 4.5E-09 66.0 21.1 174 58-243 5-193 (227)
57 COG0325 Predicted enzyme with 97.8 0.0052 1.1E-07 55.9 19.1 171 58-241 7-190 (228)
58 KOG3157 Proline synthetase co- 95.3 0.48 1E-05 42.5 12.5 140 60-212 10-169 (244)
59 cd07948 DRE_TIM_HCS Saccharomy 91.6 6 0.00013 37.4 13.9 56 87-144 25-88 (262)
60 cd03174 DRE_TIM_metallolyase D 86.6 13 0.00029 34.6 12.5 152 52-216 12-201 (265)
61 cd07939 DRE_TIM_NifV Streptomy 86.6 28 0.0006 32.7 14.5 26 189-215 166-192 (259)
62 PF01136 Peptidase_U32: Peptid 84.5 18 0.00039 33.2 12.0 82 87-169 5-92 (233)
63 cd07940 DRE_TIM_IPMS 2-isoprop 83.1 28 0.00061 32.8 12.9 18 86-103 22-40 (268)
64 TIGR02090 LEU1_arch isopropylm 82.8 45 0.00098 33.1 14.7 33 183-217 163-196 (363)
65 TIGR02660 nifV_homocitr homoci 77.2 64 0.0014 32.0 13.7 27 189-216 169-196 (365)
66 PRK05567 inosine 5'-monophosph 77.0 40 0.00087 34.9 12.6 104 35-148 230-361 (486)
67 cd07944 DRE_TIM_HOA_like 4-hyd 76.7 69 0.0015 30.3 15.1 84 87-170 23-129 (266)
68 PRK11858 aksA trans-homoaconit 76.2 87 0.0019 31.2 14.6 28 189-217 172-200 (378)
69 PF11823 DUF3343: Protein of u 75.6 8.2 0.00018 28.6 5.3 65 143-212 5-71 (73)
70 TIGR01302 IMP_dehydrog inosine 75.4 98 0.0021 31.7 14.8 93 52-149 238-358 (450)
71 PRK04452 acetyl-CoA decarbonyl 75.0 6.9 0.00015 38.0 5.9 87 34-127 112-212 (319)
72 PF04131 NanE: Putative N-acet 74.3 18 0.00039 32.4 7.8 33 85-117 80-114 (192)
73 TIGR01306 GMP_reduct_2 guanosi 73.1 81 0.0018 30.8 12.7 92 50-147 109-227 (321)
74 PRK01130 N-acetylmannosamine-6 72.8 18 0.00039 33.0 7.9 60 86-148 25-96 (221)
75 PRK07535 methyltetrahydrofolat 72.7 87 0.0019 29.5 12.9 127 33-186 56-203 (261)
76 PRK07379 coproporphyrinogen II 72.6 23 0.00049 35.7 9.3 56 49-106 75-137 (400)
77 PLN02746 hydroxymethylglutaryl 72.5 1E+02 0.0023 30.4 14.7 54 86-142 70-136 (347)
78 PRK15447 putative protease; Pr 70.4 1.1E+02 0.0023 29.6 13.3 118 32-158 15-152 (301)
79 cd07945 DRE_TIM_CMS Leptospira 69.5 1.1E+02 0.0023 29.3 13.0 16 87-102 22-39 (280)
80 cd07943 DRE_TIM_HOA 4-hydroxy- 68.6 1E+02 0.0023 28.8 14.7 28 189-216 168-196 (263)
81 cd07938 DRE_TIM_HMGL 3-hydroxy 68.5 1.1E+02 0.0024 29.0 13.0 53 87-142 23-88 (274)
82 PRK15452 putative protease; Pr 67.4 1.5E+02 0.0033 30.3 17.3 111 56-169 43-166 (443)
83 cd04724 Tryptophan_synthase_al 66.9 1.1E+02 0.0024 28.4 13.2 73 63-138 66-150 (242)
84 cd04729 NanE N-acetylmannosami 66.7 1E+02 0.0022 28.0 12.0 58 87-147 30-99 (219)
85 cd03174 DRE_TIM_metallolyase D 65.2 1.2E+02 0.0025 28.1 14.4 20 86-105 21-41 (265)
86 TIGR03128 RuMP_HxlA 3-hexulose 64.9 1E+02 0.0022 27.4 12.7 84 62-147 40-133 (206)
87 cd02911 arch_FMN Archeal FMN-b 64.1 55 0.0012 30.3 9.3 90 52-146 119-219 (233)
88 PRK05458 guanosine 5'-monophos 63.8 1.3E+02 0.0029 29.4 12.2 92 52-147 113-230 (326)
89 PRK11858 aksA trans-homoaconit 63.4 1.7E+02 0.0036 29.3 13.6 131 86-232 28-184 (378)
90 PRK09282 pyruvate carboxylase 63.2 2.1E+02 0.0045 30.6 14.4 86 130-217 99-209 (592)
91 PRK05692 hydroxymethylglutaryl 63.2 1.4E+02 0.0031 28.5 13.7 17 87-103 29-46 (287)
92 PRK08195 4-hyroxy-2-oxovalerat 63.0 1.6E+02 0.0034 28.9 14.9 27 189-216 171-200 (337)
93 cd03319 L-Ala-DL-Glu_epimerase 63.0 1.3E+02 0.0028 29.0 12.1 102 57-162 160-278 (316)
94 PRK09875 putative hydrolase; P 62.7 1.5E+02 0.0032 28.5 13.3 44 104-148 165-210 (292)
95 PRK05904 coproporphyrinogen II 62.6 41 0.00089 33.2 8.6 42 55-98 69-114 (353)
96 PRK09058 coproporphyrinogen II 61.9 42 0.00091 34.4 8.8 55 52-107 125-186 (449)
97 PTZ00314 inosine-5'-monophosph 61.9 1.9E+02 0.0041 30.1 13.6 105 35-149 243-375 (495)
98 TIGR00640 acid_CoA_mut_C methy 61.7 95 0.0021 25.9 9.9 85 57-142 13-107 (132)
99 PRK05718 keto-hydroxyglutarate 61.6 32 0.00069 31.4 7.0 52 103-158 75-127 (212)
100 TIGR02090 LEU1_arch isopropylm 61.2 1.3E+02 0.0029 29.8 12.0 129 87-231 25-179 (363)
101 PRK09249 coproporphyrinogen II 61.2 33 0.00071 35.1 7.9 48 49-98 111-162 (453)
102 cd02071 MM_CoA_mut_B12_BD meth 60.5 92 0.002 25.4 10.2 84 58-142 11-104 (122)
103 cd00381 IMPDH IMPDH: The catal 60.4 1.7E+02 0.0037 28.5 13.5 92 52-148 108-227 (325)
104 TIGR00612 ispG_gcpE 1-hydroxy- 59.9 1E+02 0.0022 30.2 10.3 65 165-244 96-166 (346)
105 TIGR00538 hemN oxygen-independ 59.4 43 0.00092 34.3 8.4 43 56-98 116-162 (455)
106 PRK08208 coproporphyrinogen II 59.1 48 0.001 33.7 8.7 85 49-135 100-212 (430)
107 cd07937 DRE_TIM_PC_TC_5S Pyruv 59.1 1.6E+02 0.0035 27.8 13.3 27 189-216 176-203 (275)
108 PRK05660 HemN family oxidoredu 58.7 60 0.0013 32.4 9.1 48 49-98 67-118 (378)
109 PRK07259 dihydroorotate dehydr 58.6 1.2E+02 0.0025 29.1 10.8 45 55-102 139-188 (301)
110 PRK14041 oxaloacetate decarbox 58.2 2.3E+02 0.005 29.2 13.8 33 183-217 175-208 (467)
111 PRK05848 nicotinate-nucleotide 58.2 1.2E+02 0.0027 28.8 10.6 37 98-138 185-221 (273)
112 TIGR00539 hemN_rel putative ox 58.1 46 0.001 32.8 8.2 55 49-105 60-121 (360)
113 cd07940 DRE_TIM_IPMS 2-isoprop 58.1 84 0.0018 29.6 9.6 29 189-217 170-201 (268)
114 PRK08195 4-hyroxy-2-oxovalerat 58.0 1.6E+02 0.0034 29.0 11.7 28 189-216 142-169 (337)
115 PRK08599 coproporphyrinogen II 57.8 52 0.0011 32.7 8.5 48 49-98 60-111 (377)
116 PRK05718 keto-hydroxyglutarate 57.8 75 0.0016 29.0 8.8 83 71-156 11-102 (212)
117 PRK00278 trpC indole-3-glycero 57.3 1.7E+02 0.0037 27.5 12.7 113 74-211 49-187 (260)
118 TIGR03234 OH-pyruv-isom hydrox 56.9 1.6E+02 0.0035 27.1 11.9 19 85-103 15-34 (254)
119 cd07943 DRE_TIM_HOA 4-hydroxy- 56.5 1.7E+02 0.0038 27.3 13.0 91 129-233 87-181 (263)
120 cd08567 GDPD_SpGDE_like Glycer 56.1 1.7E+02 0.0037 27.1 11.8 19 129-147 241-259 (263)
121 TIGR01229 rocF_arginase argina 55.6 98 0.0021 29.7 9.7 94 116-213 163-269 (300)
122 PF01729 QRPTase_C: Quinolinat 55.5 45 0.00098 29.3 6.7 86 61-149 66-157 (169)
123 TIGR03217 4OH_2_O_val_ald 4-hy 54.9 2.2E+02 0.0047 27.9 15.3 28 189-217 170-200 (333)
124 PRK13347 coproporphyrinogen II 54.7 67 0.0014 32.9 8.9 93 56-148 117-240 (453)
125 cd04740 DHOD_1B_like Dihydroor 53.9 1.4E+02 0.0031 28.4 10.6 46 54-102 135-185 (296)
126 COG0635 HemN Coproporphyrinoge 52.9 88 0.0019 31.7 9.2 99 49-149 96-226 (416)
127 COG2185 Sbm Methylmalonyl-CoA 52.4 46 0.00099 28.4 5.9 68 74-142 40-117 (143)
128 PRK08072 nicotinate-nucleotide 52.2 1.6E+02 0.0035 28.0 10.4 18 99-116 192-209 (277)
129 PRK09057 coproporphyrinogen II 51.7 1E+02 0.0022 30.7 9.5 56 49-106 64-126 (380)
130 TIGR03128 RuMP_HxlA 3-hexulose 51.2 1.8E+02 0.0039 25.9 10.9 82 86-172 39-136 (206)
131 TIGR02708 L_lactate_ox L-lacta 51.0 1.6E+02 0.0035 29.3 10.5 81 64-147 219-312 (367)
132 COG3010 NanE Putative N-acetyl 51.0 82 0.0018 28.6 7.5 71 87-160 117-203 (229)
133 TIGR01037 pyrD_sub1_fam dihydr 50.9 1.7E+02 0.0036 27.9 10.6 47 54-103 138-189 (300)
134 cd02809 alpha_hydroxyacid_oxid 50.8 2E+02 0.0043 27.6 11.0 27 121-147 230-256 (299)
135 TIGR02660 nifV_homocitr homoci 50.6 2.6E+02 0.0057 27.6 12.5 131 86-232 25-181 (365)
136 PRK06552 keto-hydroxyglutarate 50.2 2E+02 0.0044 26.2 17.3 53 102-158 75-128 (213)
137 PRK11425 PTS system N-acetylga 49.9 1.6E+02 0.0035 25.4 9.2 75 96-172 54-148 (157)
138 cd07939 DRE_TIM_NifV Streptomy 49.7 2.2E+02 0.0048 26.5 12.8 131 86-232 22-178 (259)
139 cd04728 ThiG Thiazole synthase 49.1 1.1E+02 0.0024 28.6 8.4 63 83-147 130-204 (248)
140 TIGR00854 pts-sorbose PTS syst 48.7 1.7E+02 0.0038 25.0 9.3 82 88-171 44-146 (151)
141 PRK00366 ispG 4-hydroxy-3-meth 48.4 1.5E+02 0.0032 29.3 9.5 66 165-244 104-175 (360)
142 cd08564 GDPD_GsGDE_like Glycer 48.4 2.3E+02 0.0051 26.4 13.2 103 49-155 148-263 (265)
143 TIGR00736 nifR3_rel_arch TIM-b 48.2 2.3E+02 0.0049 26.2 10.5 89 53-146 115-219 (231)
144 COG1830 FbaB DhnA-type fructos 47.7 2.2E+02 0.0047 26.9 10.2 98 130-243 46-144 (265)
145 TIGR01303 IMP_DH_rel_1 IMP deh 47.5 3.1E+02 0.0067 28.4 12.3 107 32-149 224-359 (475)
146 TIGR00381 cdhD CO dehydrogenas 47.4 62 0.0013 32.3 6.8 86 34-126 176-276 (389)
147 PRK07379 coproporphyrinogen II 47.3 2.8E+02 0.0062 27.8 11.9 44 189-232 149-192 (400)
148 cd00956 Transaldolase_FSA Tran 47.1 2.2E+02 0.0048 25.8 14.5 76 33-116 38-123 (211)
149 cd04731 HisF The cyclase subun 47.1 2.3E+02 0.005 26.0 13.4 50 120-169 73-127 (243)
150 PRK07114 keto-hydroxyglutarate 46.9 1.5E+02 0.0032 27.3 8.9 145 56-215 24-192 (222)
151 cd04732 HisA HisA. Phosphorib 46.7 2E+02 0.0044 26.0 10.1 61 86-148 148-220 (234)
152 TIGR02151 IPP_isom_2 isopenten 46.4 1.5E+02 0.0033 28.9 9.6 84 59-146 165-282 (333)
153 cd02811 IDI-2_FMN Isopentenyl- 45.9 2.9E+02 0.0064 26.8 11.6 87 57-147 162-284 (326)
154 PRK00208 thiG thiazole synthas 45.8 1.3E+02 0.0029 28.1 8.4 84 60-147 108-204 (250)
155 PF04309 G3P_antiterm: Glycero 45.3 25 0.00054 31.1 3.4 72 52-147 97-169 (175)
156 PRK10128 2-keto-3-deoxy-L-rham 45.2 1E+02 0.0022 29.2 7.9 97 68-167 9-120 (267)
157 PF00682 HMGL-like: HMGL-like 45.0 2.4E+02 0.0053 25.6 10.6 18 86-103 16-34 (237)
158 PRK09756 PTS system N-acetylga 45.0 2.1E+02 0.0045 24.8 10.0 25 148-172 126-151 (158)
159 cd00001 PTS_IIB_man PTS_IIB, P 44.7 2E+02 0.0044 24.6 10.4 83 88-172 43-146 (151)
160 PRK13209 L-xylulose 5-phosphat 44.7 2.6E+02 0.0057 26.1 10.8 15 88-102 25-40 (283)
161 PRK08649 inosine 5-monophospha 44.5 2.5E+02 0.0054 28.0 10.8 39 56-98 115-155 (368)
162 cd02810 DHOD_DHPD_FMN Dihydroo 44.5 1.8E+02 0.0039 27.4 9.7 43 57-102 146-195 (289)
163 TIGR03822 AblA_like_2 lysine-2 44.3 2.2E+02 0.0048 27.6 10.3 145 32-202 122-292 (321)
164 PRK08446 coproporphyrinogen II 43.9 1.7E+02 0.0038 28.7 9.6 56 49-107 60-121 (350)
165 PF01207 Dus: Dihydrouridine s 43.8 59 0.0013 31.4 6.2 90 52-146 101-212 (309)
166 TIGR03239 GarL 2-dehydro-3-deo 43.5 1.1E+02 0.0023 28.7 7.6 82 83-167 19-114 (249)
167 PRK06843 inosine 5-monophospha 43.5 3.6E+02 0.0079 27.2 13.2 103 36-148 156-286 (404)
168 PRK01362 putative translaldola 43.4 2.6E+02 0.0056 25.5 15.0 79 30-116 35-123 (214)
169 TIGR00539 hemN_rel putative ox 43.3 3.3E+02 0.0072 26.7 12.4 43 189-231 134-176 (360)
170 cd02801 DUS_like_FMN Dihydrour 43.3 1.9E+02 0.0041 26.1 9.3 85 57-146 107-212 (231)
171 PF03060 NMO: Nitronate monoox 43.2 1.4E+02 0.003 29.2 8.7 100 56-161 45-158 (330)
172 PRK10558 alpha-dehydro-beta-de 43.1 1.1E+02 0.0023 28.8 7.6 82 83-167 26-121 (256)
173 PRK05799 coproporphyrinogen II 42.9 1.1E+02 0.0023 30.3 8.1 55 49-106 60-121 (374)
174 TIGR02129 hisA_euk phosphoribo 42.7 2.9E+02 0.0064 25.9 11.1 50 120-170 78-136 (253)
175 PRK05742 nicotinate-nucleotide 42.3 2.4E+02 0.0052 26.9 9.9 56 98-157 192-252 (277)
176 PLN02274 inosine-5'-monophosph 42.3 2.7E+02 0.0059 29.0 11.1 27 121-147 354-380 (505)
177 COG0042 tRNA-dihydrouridine sy 42.1 1.4E+02 0.0031 29.1 8.5 85 52-139 114-219 (323)
178 cd00331 IGPS Indole-3-glycerol 42.0 1.4E+02 0.003 26.9 8.1 70 87-158 34-116 (217)
179 TIGR03572 WbuZ glycosyl amidat 41.9 2.7E+02 0.0059 25.3 15.0 94 52-147 98-227 (232)
180 PF03830 PTSIIB_sorb: PTS syst 41.8 1E+02 0.0022 26.5 6.6 25 148-172 122-147 (151)
181 PRK12331 oxaloacetate decarbox 41.5 4.1E+02 0.0089 27.3 14.0 44 184-230 177-221 (448)
182 PF01408 GFO_IDH_MocA: Oxidore 41.5 79 0.0017 25.1 5.8 88 65-160 16-110 (120)
183 PRK06543 nicotinate-nucleotide 41.2 2.7E+02 0.0058 26.7 9.9 37 98-138 196-232 (281)
184 TIGR01108 oadA oxaloacetate de 41.2 4.7E+02 0.01 27.8 13.9 40 189-230 176-216 (582)
185 PRK06106 nicotinate-nucleotide 41.1 2.6E+02 0.0057 26.7 9.9 37 98-138 197-233 (281)
186 PF07745 Glyco_hydro_53: Glyco 41.1 2.2E+02 0.0047 28.0 9.5 79 99-215 3-81 (332)
187 COG0157 NadC Nicotinate-nucleo 41.0 52 0.0011 31.3 5.0 30 128-157 196-227 (280)
188 PRK05628 coproporphyrinogen II 40.8 1.4E+02 0.003 29.7 8.4 48 49-98 68-119 (375)
189 PRK06582 coproporphyrinogen II 40.7 1.7E+02 0.0036 29.4 9.0 57 49-107 71-134 (390)
190 PRK07107 inosine 5-monophospha 40.6 4.4E+02 0.0095 27.5 12.2 20 122-141 287-306 (502)
191 cd04738 DHOD_2_like Dihydrooro 40.6 2.2E+02 0.0047 27.7 9.6 91 56-147 180-309 (327)
192 PRK07896 nicotinate-nucleotide 40.5 2.4E+02 0.0053 27.0 9.6 37 98-138 202-238 (289)
193 cd03315 MLE_like Muconate lact 40.0 3.1E+02 0.0068 25.5 12.2 101 59-162 113-230 (265)
194 PRK13802 bifunctional indole-3 39.9 3.3E+02 0.0072 29.6 11.5 61 86-146 149-239 (695)
195 TIGR01211 ELP3 histone acetylt 39.9 1.8E+02 0.004 30.4 9.3 121 106-230 122-280 (522)
196 PRK09389 (R)-citramalate synth 39.8 4.5E+02 0.0098 27.3 14.5 33 183-217 165-198 (488)
197 PRK09016 quinolinate phosphori 39.6 2.3E+02 0.005 27.3 9.3 37 98-138 211-247 (296)
198 cd07947 DRE_TIM_Re_CS Clostrid 39.5 3.4E+02 0.0074 25.8 14.6 55 87-142 24-89 (279)
199 PRK08385 nicotinate-nucleotide 39.3 3.2E+02 0.0068 26.1 10.1 37 98-138 185-221 (278)
200 PRK13585 1-(5-phosphoribosyl)- 39.2 3E+02 0.0066 25.1 10.1 7 48-55 75-81 (241)
201 TIGR00538 hemN oxygen-independ 39.2 3.5E+02 0.0075 27.7 11.3 107 118-233 103-229 (455)
202 cd08582 GDPD_like_2 Glyceropho 39.2 3E+02 0.0065 25.0 12.0 27 130-156 191-219 (233)
203 cd07948 DRE_TIM_HCS Saccharomy 39.0 3.4E+02 0.0073 25.5 11.1 147 55-217 18-196 (262)
204 PRK07428 nicotinate-nucleotide 38.7 2.6E+02 0.0057 26.8 9.6 37 98-138 199-235 (288)
205 PRK05848 nicotinate-nucleotide 38.7 61 0.0013 30.8 5.2 83 74-158 118-222 (273)
206 COG0821 gcpE 1-hydroxy-2-methy 38.5 2.7E+02 0.0059 27.3 9.4 25 191-216 110-134 (361)
207 PRK06552 keto-hydroxyglutarate 38.5 2E+02 0.0043 26.2 8.4 69 74-143 12-91 (213)
208 PRK00366 ispG 4-hydroxy-3-meth 38.3 1.9E+02 0.0041 28.6 8.5 96 88-186 46-152 (360)
209 cd02932 OYE_YqiM_FMN Old yello 37.6 3.7E+02 0.0081 26.1 10.8 78 60-140 206-312 (336)
210 PRK06559 nicotinate-nucleotide 37.4 2.9E+02 0.0064 26.5 9.6 37 98-138 200-236 (290)
211 cd04733 OYE_like_2_FMN Old yel 37.4 3.8E+02 0.0082 26.1 10.8 42 61-103 202-256 (338)
212 cd00019 AP2Ec AP endonuclease 37.0 1.5E+02 0.0033 27.8 7.8 51 191-243 85-137 (279)
213 TIGR02082 metH 5-methyltetrahy 37.0 1.6E+02 0.0034 34.2 8.9 112 49-169 415-550 (1178)
214 PRK05437 isopentenyl pyrophosp 36.9 3.5E+02 0.0075 26.7 10.4 88 57-148 170-291 (352)
215 PF01070 FMN_dh: FMN-dependent 36.8 2.1E+02 0.0045 28.4 8.8 86 63-155 215-316 (356)
216 cd07938 DRE_TIM_HMGL 3-hydroxy 36.6 2.4E+02 0.0051 26.8 8.9 29 189-217 176-205 (274)
217 PRK06015 keto-hydroxyglutarate 36.5 2.2E+02 0.0048 25.8 8.2 76 60-142 41-119 (201)
218 PF04551 GcpE: GcpE protein; 36.4 2.1E+02 0.0046 28.2 8.5 73 165-243 97-174 (359)
219 PRK09454 ugpQ cytoplasmic glyc 35.8 3.6E+02 0.0077 24.9 13.2 44 104-151 198-241 (249)
220 TIGR03217 4OH_2_O_val_ald 4-hy 35.8 4.3E+02 0.0093 25.8 11.9 29 189-217 141-169 (333)
221 PRK15062 hydrogenase isoenzyme 35.5 1.8E+02 0.0039 28.8 7.9 68 96-164 60-133 (364)
222 PLN02446 (5-phosphoribosyl)-5- 35.4 3.9E+02 0.0085 25.3 10.7 50 120-170 85-143 (262)
223 PRK06852 aldolase; Validated 35.4 4.2E+02 0.009 25.7 10.3 106 129-243 61-168 (304)
224 COG0191 Fba Fructose/tagatose 35.1 1.4E+02 0.0029 28.7 6.8 37 121-157 207-244 (286)
225 TIGR02329 propionate_PrpR prop 34.7 1.9E+02 0.004 30.4 8.5 31 87-117 135-165 (526)
226 TIGR01182 eda Entner-Doudoroff 34.7 2.3E+02 0.0051 25.6 8.1 77 68-145 1-85 (204)
227 COG1954 GlpP Glycerol-3-phosph 34.4 3.1E+02 0.0067 24.2 8.3 67 52-142 101-168 (181)
228 PF02126 PTE: Phosphotriestera 34.2 2.5E+02 0.0054 27.2 8.8 44 105-149 170-215 (308)
229 PRK09140 2-dehydro-3-deoxy-6-p 33.8 3.6E+02 0.0078 24.3 16.9 24 185-214 159-182 (206)
230 TIGR00262 trpA tryptophan synt 33.7 4E+02 0.0088 24.9 10.1 79 58-138 71-161 (256)
231 cd04743 NPD_PKS 2-Nitropropane 33.5 3.1E+02 0.0068 26.7 9.3 48 108-159 75-123 (320)
232 COG0826 Collagenase and relate 33.5 4.8E+02 0.01 25.7 10.9 112 55-169 45-169 (347)
233 cd02803 OYE_like_FMN_family Ol 33.2 4.4E+02 0.0096 25.2 11.2 83 61-146 194-310 (327)
234 PF01729 QRPTase_C: Quinolinat 32.9 95 0.0021 27.2 5.2 83 104-210 65-154 (169)
235 COG0159 TrpA Tryptophan syntha 32.9 93 0.002 29.4 5.3 93 60-166 3-99 (265)
236 cd08579 GDPD_memb_like Glycero 32.9 2.9E+02 0.0063 24.8 8.7 29 129-157 179-209 (220)
237 PRK08445 hypothetical protein; 32.5 2.9E+02 0.0062 27.2 9.1 44 53-97 70-119 (348)
238 TIGR01140 L_thr_O3P_dcar L-thr 32.3 4.6E+02 0.0099 25.1 10.8 87 105-205 73-159 (330)
239 cd08605 GDPD_GDE5_like_1_plant 31.9 4.2E+02 0.0091 24.9 9.9 36 106-143 241-276 (282)
240 PRK08207 coproporphyrinogen II 31.9 6E+02 0.013 26.3 12.4 41 189-229 303-343 (488)
241 PRK05692 hydroxymethylglutaryl 31.8 3.5E+02 0.0075 25.9 9.3 28 189-217 182-211 (287)
242 PRK01033 imidazole glycerol ph 31.7 4.3E+02 0.0093 24.6 10.5 58 87-146 155-225 (258)
243 PF01645 Glu_synthase: Conserv 31.7 3.5E+02 0.0075 27.0 9.4 98 54-151 183-307 (368)
244 PRK08207 coproporphyrinogen II 31.6 2.9E+02 0.0062 28.7 9.2 48 49-98 227-280 (488)
245 COG3010 NanE Putative N-acetyl 30.8 2.7E+02 0.006 25.4 7.6 59 86-147 35-105 (229)
246 cd01572 QPRTase Quinolinate ph 30.7 4.2E+02 0.009 25.1 9.5 57 98-158 185-246 (268)
247 cd04726 KGPDC_HPS 3-Keto-L-gul 30.5 3.7E+02 0.0081 23.5 12.2 81 62-146 41-132 (202)
248 PRK01130 N-acetylmannosamine-6 30.5 3.3E+02 0.0072 24.5 8.7 34 84-117 105-141 (221)
249 cd00423 Pterin_binding Pterin 30.5 4.5E+02 0.0098 24.5 11.3 95 34-138 64-189 (258)
250 PRK08898 coproporphyrinogen II 30.4 3.3E+02 0.0072 27.2 9.3 55 49-105 82-143 (394)
251 PRK09234 fbiC FO synthase; Rev 30.3 1.8E+02 0.0038 32.5 7.8 25 189-213 693-717 (843)
252 TIGR00973 leuA_bact 2-isopropy 30.3 6.4E+02 0.014 26.2 13.4 34 183-217 168-205 (494)
253 KOG1641 Mitochondrial chaperon 30.3 56 0.0012 26.0 2.9 23 359-381 65-87 (104)
254 TIGR01334 modD putative molybd 30.2 4.3E+02 0.0092 25.2 9.4 37 98-138 191-227 (277)
255 TIGR01227 hutG formimidoylglut 30.0 4E+02 0.0086 25.6 9.5 106 108-217 166-286 (307)
256 PRK02048 4-hydroxy-3-methylbut 29.9 2.4E+02 0.0052 30.0 8.2 132 103-246 42-200 (611)
257 COG4229 Predicted enolase-phos 29.9 88 0.0019 28.0 4.3 33 108-142 167-199 (229)
258 PRK06559 nicotinate-nucleotide 29.8 90 0.002 30.0 4.8 106 73-197 132-259 (290)
259 TIGR01306 GMP_reduct_2 guanosi 29.7 5.4E+02 0.012 25.1 13.4 71 86-158 47-131 (321)
260 PRK06106 nicotinate-nucleotide 29.7 1.1E+02 0.0023 29.3 5.3 114 74-210 130-265 (281)
261 PF01884 PcrB: PcrB family; I 29.6 1.2E+02 0.0027 28.0 5.5 77 74-151 122-215 (230)
262 COG5016 Pyruvate/oxaloacetate 29.5 3E+02 0.0066 27.8 8.3 51 185-238 180-231 (472)
263 COG3836 HpcH 2,4-dihydroxyhept 29.2 4.4E+02 0.0095 24.6 8.8 82 83-167 24-119 (255)
264 KOG2335 tRNA-dihydrouridine sy 29.1 5.7E+02 0.012 25.3 10.1 91 47-141 117-227 (358)
265 PRK09240 thiH thiamine biosynt 29.1 5.8E+02 0.013 25.3 10.7 39 56-98 135-174 (371)
266 PRK04165 acetyl-CoA decarbonyl 28.9 3.8E+02 0.0082 27.6 9.3 104 56-161 102-223 (450)
267 PRK06543 nicotinate-nucleotide 28.6 1.1E+02 0.0025 29.2 5.2 86 73-160 124-235 (281)
268 PRK07455 keto-hydroxyglutarate 28.6 4.1E+02 0.009 23.5 13.8 21 185-211 160-180 (187)
269 TIGR00126 deoC deoxyribose-pho 28.4 4.5E+02 0.0099 23.9 9.2 91 59-149 102-206 (211)
270 PRK09389 (R)-citramalate synth 28.1 6.9E+02 0.015 25.9 13.1 26 191-216 143-168 (488)
271 PRK15424 propionate catabolism 28.0 3.4E+02 0.0075 28.5 9.1 12 99-110 135-146 (538)
272 TIGR01496 DHPS dihydropteroate 28.0 2.7E+02 0.0058 26.2 7.6 58 87-147 64-125 (257)
273 PRK00694 4-hydroxy-3-methylbut 27.9 3.2E+02 0.0068 29.0 8.5 52 191-243 145-201 (606)
274 COG1139 Uncharacterized conser 27.9 6.7E+02 0.014 25.6 10.8 100 56-157 85-186 (459)
275 TIGR01305 GMP_reduct_1 guanosi 27.8 6E+02 0.013 25.0 11.5 107 35-147 109-241 (343)
276 cd02922 FCB2_FMN Flavocytochro 27.7 6E+02 0.013 25.0 10.7 68 79-147 216-300 (344)
277 PRK06294 coproporphyrinogen II 27.5 2.4E+02 0.0052 28.0 7.6 85 49-138 67-177 (370)
278 PRK06978 nicotinate-nucleotide 27.4 1.1E+02 0.0024 29.4 5.0 84 73-158 141-245 (294)
279 PF08032 SpoU_sub_bind: RNA 2' 27.2 1.9E+02 0.0041 20.9 5.3 63 107-170 7-72 (76)
280 PRK13125 trpA tryptophan synth 26.9 5.1E+02 0.011 23.9 14.0 28 87-114 119-151 (244)
281 PRK13586 1-(5-phosphoribosyl)- 26.7 5.1E+02 0.011 23.9 12.6 49 121-169 76-129 (232)
282 PF01081 Aldolase: KDPG and KH 26.7 3.4E+02 0.0074 24.4 7.7 63 102-171 67-130 (196)
283 PRK13774 formimidoylglutamase; 26.6 2.5E+02 0.0054 27.2 7.4 101 108-213 172-286 (311)
284 PF01261 AP_endonuc_2: Xylose 26.4 2.5E+02 0.0053 24.4 7.0 51 191-242 27-84 (213)
285 PRK10550 tRNA-dihydrouridine s 26.3 6E+02 0.013 24.6 10.9 87 52-142 110-219 (312)
286 TIGR00075 hypD hydrogenase exp 26.2 3E+02 0.0065 27.3 7.7 68 96-164 66-139 (369)
287 PF11213 DUF3006: Protein of u 26.2 50 0.0011 24.4 1.9 20 358-377 30-50 (71)
288 TIGR00875 fsa_talC_mipB fructo 25.9 5.1E+02 0.011 23.6 13.7 78 31-116 36-123 (213)
289 PRK13587 1-(5-phosphoribosyl)- 25.8 5.3E+02 0.011 23.7 9.9 48 121-169 79-131 (234)
290 PRK06096 molybdenum transport 25.7 6E+02 0.013 24.3 9.8 37 98-138 192-228 (284)
291 PRK15452 putative protease; Pr 25.7 6E+02 0.013 26.0 10.2 39 133-171 82-120 (443)
292 PRK00048 dihydrodipicolinate r 25.7 2.3E+02 0.0051 26.4 6.9 100 60-171 12-116 (257)
293 cd04722 TIM_phosphate_binding 25.7 4.1E+02 0.009 22.5 11.3 85 61-147 101-199 (200)
294 PRK05799 coproporphyrinogen II 25.6 6.5E+02 0.014 24.7 11.5 44 189-232 133-176 (374)
295 COG0134 TrpC Indole-3-glycerol 25.5 5E+02 0.011 24.4 8.8 71 86-158 145-228 (254)
296 cd00959 DeoC 2-deoxyribose-5-p 25.4 4.9E+02 0.011 23.2 9.6 85 59-143 101-199 (203)
297 PF03060 NMO: Nitronate monoox 25.4 3.1E+02 0.0068 26.6 7.9 42 83-126 122-165 (330)
298 PRK13585 1-(5-phosphoribosyl)- 25.3 5.2E+02 0.011 23.5 13.8 50 120-169 78-132 (241)
299 TIGR00612 ispG_gcpE 1-hydroxy- 25.3 4.3E+02 0.0094 26.0 8.5 96 88-186 38-143 (346)
300 TIGR00737 nifR3_yhdG putative 25.3 6.2E+02 0.013 24.3 10.8 87 55-146 113-221 (319)
301 PLN02925 4-hydroxy-3-methylbut 25.2 4.1E+02 0.0089 28.8 9.0 47 196-243 215-266 (733)
302 COG1243 ELP3 Histone acetyltra 25.1 6.3E+02 0.014 26.1 9.8 108 108-220 122-262 (515)
303 cd08608 GDPD_GDE2 Glycerophosp 25.0 6.8E+02 0.015 24.7 11.0 53 101-157 209-261 (351)
304 PRK07807 inosine 5-monophospha 25.0 7.8E+02 0.017 25.5 11.9 105 33-148 227-360 (479)
305 PRK09016 quinolinate phosphori 24.9 1.3E+02 0.0029 28.9 5.0 114 74-210 145-279 (296)
306 cd08068 MPN_BRCC36 Mov34/MPN/P 24.9 81 0.0018 29.5 3.4 35 182-218 62-103 (244)
307 PRK02083 imidazole glycerol ph 24.8 5.5E+02 0.012 23.6 10.2 86 63-149 111-229 (253)
308 COG0826 Collagenase and relate 24.7 3.7E+02 0.008 26.5 8.2 43 130-172 82-124 (347)
309 smart00633 Glyco_10 Glycosyl h 24.7 1.7E+02 0.0037 27.2 5.7 37 190-226 135-173 (254)
310 PRK13210 putative L-xylulose 5 24.6 5.6E+02 0.012 23.7 11.1 113 85-208 17-180 (284)
311 PRK06015 keto-hydroxyglutarate 24.6 3.4E+02 0.0074 24.5 7.4 108 56-172 13-127 (201)
312 cd07941 DRE_TIM_LeuA3 Desulfob 24.6 5.9E+02 0.013 23.9 15.1 16 87-102 23-39 (273)
313 cd07941 DRE_TIM_LeuA3 Desulfob 24.5 5.9E+02 0.013 23.9 9.6 27 189-216 178-206 (273)
314 PRK08385 nicotinate-nucleotide 24.5 1.5E+02 0.0032 28.3 5.2 118 73-212 119-260 (278)
315 cd08556 GDPD Glycerophosphodie 24.5 4.5E+02 0.0097 22.4 12.3 75 64-142 103-183 (189)
316 PRK09140 2-dehydro-3-deoxy-6-p 24.4 5.3E+02 0.011 23.2 13.9 18 125-142 68-85 (206)
317 TIGR01334 modD putative molybd 24.4 6.2E+02 0.014 24.1 12.5 112 69-198 117-254 (277)
318 PF00220 Hormone_4: Neurohypop 24.3 40 0.00087 14.7 0.6 6 2-7 4-9 (9)
319 PRK12581 oxaloacetate decarbox 23.8 8.2E+02 0.018 25.3 12.9 28 189-217 190-218 (468)
320 PRK08446 coproporphyrinogen II 23.8 6.9E+02 0.015 24.4 11.0 14 189-202 163-176 (350)
321 TIGR01768 GGGP-family geranylg 23.8 1.4E+02 0.0031 27.5 4.8 76 74-150 118-211 (223)
322 PRK09250 fructose-bisphosphate 23.7 7.2E+02 0.016 24.6 11.7 99 130-243 94-193 (348)
323 PRK15408 autoinducer 2-binding 23.7 2.5E+02 0.0055 27.3 6.9 73 74-148 23-113 (336)
324 PF12224 Amidoligase_2: Putati 23.6 2.8E+02 0.006 25.5 6.9 30 190-220 91-125 (252)
325 PRK13226 phosphoglycolate phos 23.5 2.7E+02 0.0059 25.2 6.8 73 86-158 100-187 (229)
326 COG1303 Uncharacterized protei 23.5 5E+02 0.011 22.6 8.1 98 32-156 43-140 (179)
327 PRK09249 coproporphyrinogen II 23.4 8E+02 0.017 25.0 11.2 44 189-232 185-228 (453)
328 cd01572 QPRTase Quinolinate ph 23.3 1.6E+02 0.0035 27.9 5.3 47 108-157 172-221 (268)
329 PRK09456 ?-D-glucose-1-phospha 23.3 1.6E+02 0.0034 26.0 5.0 42 111-154 151-192 (199)
330 PRK07535 methyltetrahydrofolat 23.2 6.3E+02 0.014 23.7 9.9 56 86-144 57-120 (261)
331 TIGR00262 trpA tryptophan synt 23.2 6.1E+02 0.013 23.7 9.1 48 7-55 44-92 (256)
332 TIGR03590 PseG pseudaminic aci 23.2 6.3E+02 0.014 23.7 10.0 75 74-150 31-113 (279)
333 TIGR00074 hypC_hupF hydrogenas 23.1 57 0.0012 24.6 1.7 14 358-371 33-46 (76)
334 PRK00278 trpC indole-3-glycero 23.1 5.1E+02 0.011 24.3 8.6 72 86-159 149-233 (260)
335 cd03316 MR_like Mandelate race 23.1 7E+02 0.015 24.2 10.1 100 58-161 172-289 (357)
336 cd00331 IGPS Indole-3-glycerol 22.9 5E+02 0.011 23.2 8.4 71 87-159 111-194 (217)
337 PF01455 HupF_HypC: HupF/HypC 22.9 52 0.0011 24.2 1.4 14 358-371 35-48 (68)
338 PRK07591 threonine synthase; V 22.9 3.1E+02 0.0068 27.7 7.6 98 50-152 90-196 (421)
339 cd00983 recA RecA is a bacter 22.8 1.3E+02 0.0028 29.5 4.6 72 81-153 67-146 (325)
340 TIGR02247 HAD-1A3-hyp Epoxide 22.7 1.7E+02 0.0037 25.9 5.2 41 111-153 162-202 (211)
341 PRK10415 tRNA-dihydrouridine s 22.7 4.6E+02 0.0099 25.4 8.5 89 53-146 113-223 (321)
342 cd04731 HisF The cyclase subun 22.7 5.9E+02 0.013 23.2 10.1 60 86-147 151-223 (243)
343 PRK07428 nicotinate-nucleotide 22.6 1.5E+02 0.0033 28.4 4.9 83 74-158 132-236 (288)
344 TIGR00735 hisF imidazoleglycer 22.5 6.2E+02 0.014 23.4 13.9 51 120-170 76-131 (254)
345 PF00977 His_biosynth: Histidi 22.4 4.9E+02 0.011 23.8 8.2 91 120-216 75-171 (229)
346 TIGR01304 IMP_DH_rel_2 IMP deh 22.4 7.8E+02 0.017 24.5 10.6 40 56-99 116-157 (369)
347 TIGR03581 EF_0839 conserved hy 22.2 98 0.0021 28.3 3.3 68 133-218 141-214 (236)
348 PRK09997 hydroxypyruvate isome 22.1 6.2E+02 0.013 23.2 13.3 33 85-117 16-55 (258)
349 TIGR00216 ispH_lytB (E)-4-hydr 22.0 2E+02 0.0044 27.5 5.6 50 86-142 41-90 (280)
350 PF03435 Saccharop_dh: Sacchar 21.9 83 0.0018 31.2 3.2 103 99-217 52-157 (386)
351 PRK07998 gatY putative fructos 21.8 6.9E+02 0.015 23.9 9.2 65 89-155 158-237 (283)
352 PF01081 Aldolase: KDPG and KH 21.8 1.9E+02 0.004 26.1 5.1 149 32-214 20-179 (196)
353 TIGR00977 LeuA_rel 2-isopropyl 21.5 9.5E+02 0.021 25.2 14.8 29 189-217 181-210 (526)
354 cd00530 PTE Phosphotriesterase 21.5 3.4E+02 0.0073 25.5 7.2 38 109-147 168-207 (293)
355 TIGR00007 phosphoribosylformim 21.4 5.6E+02 0.012 23.1 8.5 83 87-169 31-128 (230)
356 COG1456 CdhE CO dehydrogenase/ 21.4 8.2E+02 0.018 24.4 9.7 106 49-156 96-220 (467)
357 PF06180 CbiK: Cobalt chelatas 21.3 4.6E+02 0.01 24.7 7.9 54 59-116 18-72 (262)
358 PF13419 HAD_2: Haloacid dehal 21.3 1.2E+02 0.0025 25.4 3.6 26 115-142 147-172 (176)
359 PRK14533 groES co-chaperonin G 21.3 78 0.0017 24.7 2.2 37 359-405 52-88 (91)
360 PRK01722 formimidoylglutamase; 21.2 7.5E+02 0.016 23.8 10.8 95 116-214 182-290 (320)
361 TIGR01496 DHPS dihydropteroate 21.2 6.8E+02 0.015 23.4 12.5 82 34-125 63-171 (257)
362 PRK07114 keto-hydroxyglutarate 20.9 6.6E+02 0.014 23.1 14.8 117 32-160 27-157 (222)
363 COG0418 PyrC Dihydroorotase [N 20.7 7.9E+02 0.017 23.9 11.7 76 105-207 57-134 (344)
364 cd08067 MPN_2A_DUB Mov34/MPN/P 20.7 2.7E+02 0.0058 24.8 5.8 35 181-217 57-92 (187)
365 cd01299 Met_dep_hydrolase_A Me 20.7 6.8E+02 0.015 23.9 9.3 83 57-142 118-217 (342)
366 PRK13587 1-(5-phosphoribosyl)- 20.6 6.7E+02 0.014 23.0 12.6 93 53-148 101-222 (234)
367 PLN02819 lysine-ketoglutarate 20.6 1.3E+03 0.029 26.5 12.7 148 53-216 572-737 (1042)
368 PRK05286 dihydroorotate dehydr 20.6 8E+02 0.017 24.0 10.4 49 56-104 189-246 (344)
369 PRK07455 keto-hydroxyglutarate 20.6 5.1E+02 0.011 22.9 7.7 68 76-144 13-88 (187)
370 PF13192 Thioredoxin_3: Thiore 20.6 1.8E+02 0.0039 21.3 4.1 46 93-138 24-76 (76)
371 PRK05926 hypothetical protein; 20.5 5.7E+02 0.012 25.4 8.7 26 189-214 234-259 (370)
372 PRK08208 coproporphyrinogen II 20.5 8.9E+02 0.019 24.4 11.0 40 189-228 175-214 (430)
373 cd02808 GltS_FMN Glutamate syn 20.4 8.7E+02 0.019 24.3 10.3 93 55-149 195-316 (392)
374 COG0157 NadC Nicotinate-nucleo 20.4 7.6E+02 0.016 23.6 9.4 57 79-139 161-228 (280)
375 cd06279 PBP1_LacI_like_3 Ligan 20.4 3.3E+02 0.0071 25.1 6.8 16 88-103 47-63 (283)
376 TIGR02311 HpaI 2,4-dihydroxyhe 20.3 4.9E+02 0.011 24.2 7.8 82 83-167 19-114 (249)
377 PRK13772 formimidoylglutamase; 20.2 7.9E+02 0.017 23.7 9.9 81 129-213 199-290 (314)
No 1
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-73 Score=541.41 Aligned_cols=368 Identities=40% Similarity=0.679 Sum_probs=328.9
Q ss_pred eEEEeecCCc------HHHHHHHH--Hhhc--CCCCCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHH
Q 037610 24 RVTTVVTKDE------LTEFMQST--ILKR--QEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEAL 93 (405)
Q Consensus 24 ~~~~~~~~~~------~~~~~~~~--~~~~--~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l 93 (405)
+++++..+.+ .+.+|++. +... ..... ||||+|++.|.+++++|++.+|+++++||||||+++.|+++|
T Consensus 20 ~~~~~~e~~~~~~~~a~r~~i~e~~~~~~~~~~~e~~-aFfv~Dl~~I~Rkl~~w~~~LprV~PfYAVKCN~dp~vl~~L 98 (448)
T KOG0622|consen 20 KVEVLDEGSSKTLTGALRNLIEEGTLVAERMETGEKQ-AFFVADLGAIERKLEAWKKALPRVRPFYAVKCNSDPKVLRLL 98 (448)
T ss_pred eeEecccccchhhhHHHHHHHHHhhhhhhhccccccC-ceEEecHHHHHHHHHHHHHhcccCCCceeEEeCCCHHHHHHH
Confidence 4566666655 77777765 3332 33467 999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCC
Q 037610 94 AALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDD 173 (405)
Q Consensus 94 ~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~ 173 (405)
++.|+||+|+|..|+++++..|++|+||||.+|+|+.+.|++|++.||...++||.+||.++.+.+|+++++|||+++.+
T Consensus 99 a~lG~gfdcaSk~E~~lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tfDne~el~kv~~~hP~a~llLrIatdds 178 (448)
T KOG0622|consen 99 ASLGCGFDCASKNELDLVLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIATDDS 178 (448)
T ss_pred HHcCccceecChHHHHHHHhcCCChHHeEecCCCccHHHHHHHHHcCCeEEeecCHHHHHHHHHhCCCceEEEEEccCCC
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999886
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCchhHH----
Q 037610 174 SGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKL---- 249 (405)
Q Consensus 174 ~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~~~~~~l---- 249 (405)
. +....+.|||+ +.+++..+++.+++.+++++|+|||+||.+.+++.|.+++..++.+++++.++|+ .+.+|
T Consensus 179 ~-a~~~l~~KFG~--~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~Gf-~m~~LdiGG 254 (448)
T KOG0622|consen 179 T-ATCRLNLKFGC--SLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAELGF-EMDILDIGG 254 (448)
T ss_pred c-ccccccCccCC--CHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcCc-eEEEeecCC
Confidence 4 45666799999 9999999999999999999999999999999999999999999999999988774 33322
Q ss_pred ------------------HHHHHHHhCCCCCcEEEECCchhhhccceeEEEEEEEEEEeCC------------eeEEEEe
Q 037610 250 ------------------FKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGE------------LREYWIN 299 (405)
Q Consensus 250 ------------------i~~~l~~~~~~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~------------~~~~~i~ 299 (405)
+|.+++.+|++.++.++.|||||+|+.|++|.+.|+++|..+. +..|+++
T Consensus 255 Gf~g~~~~~~~fe~i~~~In~ald~~Fp~~~v~iiaEpGRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~n 334 (448)
T KOG0622|consen 255 GFPGDEGHAVVFEEIADVINTALDLYFPSGGVDIIAEPGRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVN 334 (448)
T ss_pred CCCCccchhhhhhhHHHHHHHHHHHhCCCCCceEEeccchheeechheeeeeeeeeeeccccccCccccccCceEEEEEc
Confidence 7889999999559999999999999999999999999998632 2369999
Q ss_pred cCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCcccccc
Q 037610 300 DGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTAC 379 (405)
Q Consensus 300 dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ 379 (405)
||+|++|+|++||++++.+.+..+..+ +...++.+|+||+|++.|++.++..+|.+.+|||++|.+|||||+++
T Consensus 335 DGVYGsfnciL~D~~~~i~~~~~~~~e------~e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~ 408 (448)
T KOG0622|consen 335 DGVYGSFNCILFDHQHPIPLVVKDPSE------EEPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSA 408 (448)
T ss_pred cceeeeechhhhcccCCcccccCCCcc------ccceeeeeeecCCcchHHHHHhhccCCCCCccCeEEEccCCcccccc
Confidence 999999999999999987655544332 33467899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEeCCccccc
Q 037610 380 GTNFNGYSTVAIPTYVVRSNQTLLA 404 (405)
Q Consensus 380 ~~~fn~~~~p~~~~~~~~s~~~~~~ 404 (405)
+|.||++++|. +||.+|..+|-.
T Consensus 409 aS~fNgf~~p~--~~y~~s~~~~e~ 431 (448)
T KOG0622|consen 409 ASTFNGFQRPK--IYYVMSDGDWEK 431 (448)
T ss_pred ccccCCCCCCc--eEEEeccccHHH
Confidence 99999999987 699999988854
No 2
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=100.00 E-value=3.8e-68 Score=528.60 Aligned_cols=343 Identities=36% Similarity=0.620 Sum_probs=290.9
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCC
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANP 126 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp 126 (405)
+.++ ||||||++.|++|+++|++.||+++++||+|||+++.|++++.+.|+||||+|.+|++.|+++|+++++|+|+||
T Consensus 10 ~~~~-p~yv~d~~~i~~~~~~l~~~lp~~~~~YAvKaN~~~~il~~l~~~G~g~DvaS~gEl~~al~~G~~~~~Iif~gp 88 (394)
T cd06831 10 TGKN-AFFVGDLGKIVKKHSQWQTVMAQIKPFYTVRCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIYTNP 88 (394)
T ss_pred cCCC-CeEEEEHHHHHHHHHHHHHHCCCCeEEeeeccCCCHHHHHHHHHcCCCeEeCCHHHHHHHHhcCCCcCCEEEeCC
Confidence 4588 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCe
Q 037610 127 CKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLS 206 (405)
Q Consensus 127 ~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~ 206 (405)
+|+.++|+.|+++|+.++++||++||++|.+.+++.++.|||+++... .....++|||+ +.+++.++++.+++.+++
T Consensus 89 ~K~~~~l~~a~~~Gv~~i~vDS~~El~~i~~~~~~~~v~lRi~~~~~~-~~~~~~~KFGi--~~~~~~~~l~~~~~~~l~ 165 (394)
T cd06831 89 CKQASQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKLLLHIATEDNI-GGEEMNMKFGT--TLKNCRHLLECAKELDVQ 165 (394)
T ss_pred CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHhCCCCcEEEEEeccCCC-CCCccCCCCCC--CHHHHHHHHHHHHHCCCe
Confidence 999999999999999778999999999999999999999999997543 22345689999 999999999998888999
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCchhHH-------------------HHHHHHHhCC-CCCcEEE
Q 037610 207 VVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKL-------------------FKLIFRELLP-GSSLKVI 266 (405)
Q Consensus 207 l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~~~~~~l-------------------i~~~l~~~~~-~~~~~l~ 266 (405)
+.|||||+||++.+.+.|.++++.+.++++.++..|+ .+++| ++..++++++ ..+++++
T Consensus 166 ~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~~g~-~l~~ldiGGGf~~~~~~~~~~~~~i~~~l~~~~~~~~~~~li 244 (394)
T cd06831 166 IVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGF-KMNMLDIGGGFTGSEIQLEEVNHVIRPLLDVYFPEGSGIQII 244 (394)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEeCCCcCCCCCCHHHHHHHHHHHHHHhcCcCCCCEEE
Confidence 9999999999999999999998888888887765542 22221 5566677776 3468999
Q ss_pred ECCchhhhccceeEEEEEEEEEEeCC---------------eeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccC
Q 037610 267 SEPGRFFAASAFTLYAQIIGKRVRGE---------------LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSK 331 (405)
Q Consensus 267 ~EPGr~lv~~a~~l~t~V~~~k~~~~---------------~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (405)
+|||||++++|++|+|+|+++|...+ ..+|++++|+|+++.+..++...+.+.+......
T Consensus 245 ~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~~d~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~----- 319 (394)
T cd06831 245 AEPGSYYVSSAFTLAVNVIAKKAVENDKHLSSVEKNGSDEPAFVYYMNDGVYGSFASKLSEKLNTTPEVHKKYKE----- 319 (394)
T ss_pred EeCChhhhhcceEEEEEEEEEEeeccccccccccccCCCCceeEEEEcCceechhhhhhcccCcccceeeccCCC-----
Confidence 99999999999999999999997421 1357788889998888766543321221111110
Q ss_pred CCCceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCCceEEEEeCCccc
Q 037610 332 GLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSNQTL 402 (405)
Q Consensus 332 ~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~~~~~~s~~~~ 402 (405)
.....+++|+||+|++.|++.+++.||++++||||+|.++|||+.+|+++||++++|.++.|. ++.+|
T Consensus 320 -~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~i~~~GAY~~s~ss~Fn~~~~p~~v~~~--~~~~~ 387 (394)
T cd06831 320 -DEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGAGSLHEPSTFNDFQRPAIYYMM--SFSDW 387 (394)
T ss_pred -CCCceeEEEEeCCCCHHHeecccCcCCCCCCCCEEEECCCCCcccccccCCCCCCCCcEEEEE--Ccchh
Confidence 123467899999999999999999999999999999999999999999999999999864444 45555
No 3
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-66 Score=512.80 Aligned_cols=334 Identities=30% Similarity=0.481 Sum_probs=289.1
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCC--CceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEc
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLPM--IHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYA 124 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~--~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~ 124 (405)
+++| |+||||++.|++|+++|++++++ ++++||+|||+++.|+++|.++|.|+||+|++|++.++++|++|++|+|+
T Consensus 24 ~~gT-P~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~S~gEl~~al~aG~~~~~I~f~ 102 (394)
T COG0019 24 EFGT-PVYVYDEATLRRNARELKSAFPGSGAKVFYAVKANSNPAILRLLAEEGSGFDVASLGELELALAAGFPPERIVFS 102 (394)
T ss_pred ccCC-CEEEEcHHHHHHHHHHHHHHhccCCceEEEEEcCCCCHHHHHHHHHhCCCceecCHHHHHHHHHcCCChhhEEEC
Confidence 6899 99999999999999999999985 79999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCC--CeEEEEEecCCCC--CCCCCCC---CCCCCCCChhhHHHHH
Q 037610 125 NPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPK--SDLLIRIKSPDDS--GAKYPLD---SKYGAGHHPQEIMPLL 197 (405)
Q Consensus 125 gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~--~~v~lRi~~~~~~--~~~~~~~---srfGi~~~~~e~~~~~ 197 (405)
||+|+++||++|++.|+.+|++||++||++|.+.+++ +++.|||||+.+. |.++.++ +|||+ +.+++.+++
T Consensus 103 g~~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~~a~~~~~~v~lRInP~~~~~th~~~~tg~~~sKFG~--~~~~a~~~~ 180 (394)
T COG0019 103 GPAKSEEEIAFALELGIKLINVDSEEELERLSAIAPGLVARVSLRINPGVSAGTHEYIATGGKSSKFGI--SPEEALDVL 180 (394)
T ss_pred CCCCCHHHHHHHHHcCCcEEEeCCHHHHHHHHHhccccCceEEEEECCCCCCccCccccCCccccccCC--CHHHHHHHH
Confidence 9999999999999999977999999999999999887 7999999999865 3445554 89999 999988888
Q ss_pred HHHHH-cCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH-hCCCCchhHH---------------------HHHHH
Q 037610 198 KAAEA-SGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAA-RTSNNKMRKL---------------------FKLIF 254 (405)
Q Consensus 198 ~~~~~-~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~-~~G~~~~~~l---------------------i~~~l 254 (405)
+.+.+ +++++.|||||+|||+.|.+.|.++++++.++++.+. ..|+ .++++ +.+.+
T Consensus 181 ~~~~~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~-~l~~inlGGG~gi~Y~~~~~~~~~~~~~~~l 259 (394)
T COG0019 181 ERAAKLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGI-QLEWLNLGGGLGITYEDEYDPPDLAAYAKAL 259 (394)
T ss_pred HHHHhcCCCceEEEEEeecCCCCCcHHHHHHHHHHHHHHHHHHHhhCC-CceEEEecCCcCcCCCCCCCCcCHHHHHHHH
Confidence 87654 5999999999999999999999999999999888773 3332 21111 45566
Q ss_pred HHhCCC--CCcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCC-CChhhhhhccccccccCCCCCCCCccC
Q 037610 255 RELLPG--SSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFG-SLAWVTCDEAIAKCTPLPFASSFTTSK 331 (405)
Q Consensus 255 ~~~~~~--~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (405)
.+.+.. ..+++++||||+++++||+|+|+|.++|+.++ ++|+++|++++ .+.+.+|+.+|+. .+ +....
T Consensus 260 ~~~~~~~~~~~~l~~EPGR~iv~~aG~Lvt~V~~~k~~~~-~~~v~vD~gm~~~~rpaly~a~~~~-~~--~~~~~---- 331 (394)
T COG0019 260 KEAFGEYAEDVELILEPGRAIVANAGVLVTEVLDVKENGE-RNFVIVDGGMNDLMRPALYGAYHHI-RL--NRTDE---- 331 (394)
T ss_pred HHHHhhccCCCeEEEccchhhhhcceeEEEEEEEEEEecC-ceEEEEechhccCcCHHHcCCcccc-cc--ccccC----
Confidence 666653 57999999999999999999999999999754 78988887765 4468899888753 22 22110
Q ss_pred CCCceeeEEEeccCcCCCCeeecCCCCCC-CCCCCEEEEcCCCccccccCCCCCCCCCCCceE
Q 037610 332 GLTRTYNSTVFGPTCDAFDEVFTGHKLPE-LEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPT 393 (405)
Q Consensus 332 ~~~~~~~~~v~G~~C~~~D~l~~~~~lp~-l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~~ 393 (405)
....+.++|+||+|+++|+|.+++.||+ +++||+|+|.++|||+++|+|+||++++|++++
T Consensus 332 -~~~~~~~~v~G~~CesgD~~~~d~~lp~~~~~GD~l~i~~aGAY~~sm~s~yN~~~~~~ev~ 393 (394)
T COG0019 332 -DAEREEYDVVGPTCESGDVLARDRALPEPLKVGDLLVILDAGAYGASMSSNYNGRPRPAEVL 393 (394)
T ss_pred -CCCeEEEEEECCCcCCCCeeeeeeeCCCCCCCCCEEEEcccchhhhhhhccccCCCCCceee
Confidence 2346789999999999999999999996 569999999999999999999999999999754
No 4
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=100.00 E-value=6.9e-63 Score=488.33 Aligned_cols=333 Identities=21% Similarity=0.291 Sum_probs=275.5
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhC--CCCCCcEEEc
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLL--DVSPDRIIYA 124 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~--G~~~~~Ii~~ 124 (405)
+.+| |+||||++.|++|+++|++.++..+++||+|||+++.|++.+.++|+||||+|.+|+++++++ |+++++|+|+
T Consensus 9 ~~~t-P~~v~d~~~l~~~~~~l~~~~~~~~~~yAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~~G~~~~~Iif~ 87 (368)
T cd06840 9 PDVG-PCYVYDLETVRARARQVSALKAVDSLFYAIKANPHPDVLRTLEEAGLGFECVSIGELDLVLKLFPDLDPRRVLFT 87 (368)
T ss_pred CCCC-CEEEecHHHHHHHHHHHHhCCCCCeEEEEeccCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHcccCCCcceEEEc
Confidence 5679 999999999999999998644556899999999999999999999999999999999999998 9999999999
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCC--CCCCC---CCCCCCCCChhhHHHHHHH
Q 037610 125 NPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSG--AKYPL---DSKYGAGHHPQEIMPLLKA 199 (405)
Q Consensus 125 gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~--~~~~~---~srfGi~~~~~e~~~~~~~ 199 (405)
||.|++++|++|+++|+ .+++||++||++|.+.+++.+++|||+++...+ ..+.+ ++|||+ +.+++.++++.
T Consensus 88 gp~K~~~~l~~a~~~gv-~i~~Ds~~El~~i~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~--~~~~~~~~l~~ 164 (368)
T cd06840 88 PNFAARSEYEQALELGV-NVTVDNLHPLREWPELFRGREVILRIDPGQGEGHHKHVRTGGPESKFGL--DVDELDEARDL 164 (368)
T ss_pred CCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHhcccCCEEEEECCCCCCCCCCceecCCCCCCCCC--CHHHHHHHHHH
Confidence 99999999999999999 489999999999999998999999999986542 22233 499999 99999999998
Q ss_pred HHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh-------CCC--C--------chhHHHHHHHHHhCC-CC
Q 037610 200 AEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAAR-------TSN--N--------KMRKLFKLIFRELLP-GS 261 (405)
Q Consensus 200 ~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~-------~G~--~--------~~~~li~~~l~~~~~-~~ 261 (405)
+++.++++.|||||+||+..+.+.|.++++.+.++.+.+.. .|+ + +++. +...+.+.+. .+
T Consensus 165 ~~~~~l~l~GlhfH~GS~~~~~~~~~~~~~~~~~l~~~~~~~~~idiGGGf~~~y~~~~~~~~~~~-~~~~i~~~~~~~~ 243 (368)
T cd06840 165 AKKAGIIVIGLHAHSGSGVEDTDHWARHGDYLASLARHFPAVRILNVGGGLGIPEAPGGRPIDLDA-LDAALAAAKAAHP 243 (368)
T ss_pred HHhCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEecCcccCCCCCCCCCCCHHH-HHHHHHHHHhhCC
Confidence 88889999999999999999999998888776666654431 233 0 1111 3445544433 35
Q ss_pred CcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCC-CChhhhhhccccccccCCCCCCCCccCCCCceeeEE
Q 037610 262 SLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFG-SLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNST 340 (405)
Q Consensus 262 ~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (405)
++++++|||||++++|++++++|+++|..++ ++|+++|++++ .+.+.+|..+++. ..+.... .....+++
T Consensus 244 ~~~l~~EPGR~lva~ag~lvt~V~~vK~~~~-~~~~~~d~G~~~l~~p~~~~~~~~~-~~~~~~~-------~~~~~~~~ 314 (368)
T cd06840 244 QYQLWMEPGRFIVAESGVLLARVTQIKHKDG-VRFVGLETGMNSLIRPALYGAYHEI-VNLSRLD-------EPPAGNAD 314 (368)
T ss_pred CcEEEEecCceeeecceEEEEEEEEEEecCC-cEEEEEeCchhcccchhhhccccee-EecCCCC-------cCCcceEE
Confidence 7899999999999999999999999998654 45555555444 3456777666542 2222111 12345789
Q ss_pred EeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCCceE
Q 037610 341 VFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPT 393 (405)
Q Consensus 341 v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~~ 393 (405)
|+||+|+++|++..+..+|++++||+|+|.++|||+++++++||++|+|++++
T Consensus 315 v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~~~~v~ 367 (368)
T cd06840 315 VVGPICESGDVLGRDRLLPETEEGDVILIANAGAYGFCMASTYNLREPAEEVV 367 (368)
T ss_pred EEeCCcCCCCEEeecccCCCCCCCCEEEEecCCcchHhhhhhccCCCCCCEEe
Confidence 99999999999999999999999999999999999999999999999999754
No 5
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=100.00 E-value=1.9e-61 Score=484.12 Aligned_cols=334 Identities=21% Similarity=0.271 Sum_probs=276.5
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCC----------CCceeeeeccCCcHHHHHHHHHcC----CeEEEcCHHHHHHHH
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLP----------MIHPHYAVKCNPEPALLEALAALG----SNFDCGSRSEIEAVL 112 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~----------~~~i~yavKaN~~~~vl~~l~~~G----~g~~vaS~~E~~~a~ 112 (405)
+++| |+||||++.|++|+++++++|+ +++++||+|||+++.|+++|.++| +||||+|.+|++.|+
T Consensus 2 ~ygt-Plyvyd~~~i~~~~~~l~~af~~~~~~~~~~~~~~~~YAvKAN~~~~vl~~l~~~G~~~~~g~DvaS~~El~~al 80 (409)
T cd06830 2 GYGL-PLLLRFPDILRHRIERLNAAFAKAIEEYGYKGKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAAL 80 (409)
T ss_pred CCCC-CEEEEcHHHHHHHHHHHHHHHHHHHHhcCcCCceEEEEEeecCCHHHHHHHHHHcCCccceeEEeCCHHHHHHHH
Confidence 6899 9999999999999999999997 468999999999999999999999 999999999999999
Q ss_pred hCCCCCCcEEEcCCCCCHHHHHHHHHc---CCc-EEEecCHHHHHHHHhHC----CCCeEEEEEecCCCC-CCCC---CC
Q 037610 113 LLDVSPDRIIYANPCKPVSHIKYAASV---GVN-LTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDS-GAKY---PL 180 (405)
Q Consensus 113 ~~G~~~~~Ii~~gp~k~~~~l~~a~~~---gv~-~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~-~~~~---~~ 180 (405)
++|+++++|++.+++|+.++|+.|++. |+. ++++||++||++|.+++ ++.+++||||++.+. +..+ ..
T Consensus 81 ~~G~~~~~ii~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~~~ 160 (409)
T cd06830 81 ALLKTPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGVRIKLASKGSGKWQESGGD 160 (409)
T ss_pred hcCCCCCCEEEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEEEccCCCCCcceeccCCC
Confidence 999988889988889999999999876 443 58999999999999873 457899999998654 2222 23
Q ss_pred CCCCCCCCChhhHHHHHHHHHHc--CCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhC-----------CC--C-
Q 037610 181 DSKYGAGHHPQEIMPLLKAAEAS--GLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAART-----------SN--N- 244 (405)
Q Consensus 181 ~srfGi~~~~~e~~~~~~~~~~~--~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~-----------G~--~- 244 (405)
++|||+ +.+++.++++.+++. ++++.|||||+||++.+.+.|.++++++.++++.+++. |+ +
T Consensus 161 ~sKFGi--~~~~~~~~~~~~~~~~~~l~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~iDiGGGf~v~y 238 (409)
T cd06830 161 RSKFGL--TASEILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKLGANLRYLDIGGGLGVDY 238 (409)
T ss_pred CCCCCC--CHHHHHHHHHHHHhcCcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEcCCCcccCC
Confidence 599999 999999999998874 68999999999999999999999999998888777532 22 0
Q ss_pred -------------chhHH---HHHHHHHhCC---CCCcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCC
Q 037610 245 -------------KMRKL---FKLIFRELLP---GSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGS 305 (405)
Q Consensus 245 -------------~~~~l---i~~~l~~~~~---~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~ 305 (405)
+++.+ +.+.+++++. .+.++|++|||||++++|++++|+|+++|..+ ++|+++||++++
T Consensus 239 ~~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~~K~~~--~~~~~~dg~~~~ 316 (409)
T cd06830 239 DGSRSSSDSSFNYSLEEYANDIVKTVKEICDEAGVPHPTIVTESGRAIVAHHSVLIFEVLGVKRLA--DWYFCNFSLFQS 316 (409)
T ss_pred CCCcCcccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEecCHHhhhhceEEEEEeEEEEecC--CEEEEecccccC
Confidence 11111 4455555543 24679999999999999999999999999854 689999999888
Q ss_pred Ch-hhhhhccccccccCCCCCCCCccCCCCceeeEEEeccCcCCCCeeecCCCC---------C--CCCCCCEEEEcCCC
Q 037610 306 LA-WVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKL---------P--ELEVNDWLVFSEMG 373 (405)
Q Consensus 306 ~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~l---------p--~l~~GD~l~~~~~G 373 (405)
+. +.+|+..++ +.++.... .....+++|+||+|+|+|++.+++.+ | ++++||+|+|.++|
T Consensus 317 ~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~v~Gp~C~s~D~~~~~~~l~~~~~~~~lp~~~~~~GD~l~~~~~G 388 (409)
T cd06830 317 LPDSWAIDQLFP-IMPLHRLN-------EKPTRRAVLGDITCDSDGKIDSFIDPPDILPTLPLHPLRKDEPYYLGFFLVG 388 (409)
T ss_pred CcchHHhCCCce-EEECCCCC-------CCCceeEEEeccCcCCCCEEeeecccccccccccCCCCCCCCCCEEEEEecc
Confidence 75 345666554 23333211 12346789999999999999998774 4 34899999999999
Q ss_pred ccccccCCCCCCCCCCCceE
Q 037610 374 AYTTACGTNFNGYSTVAIPT 393 (405)
Q Consensus 374 AY~~~~~~~fn~~~~p~~~~ 393 (405)
||+.+|+++||++++|++++
T Consensus 389 AY~~s~ss~fn~~~~p~~v~ 408 (409)
T cd06830 389 AYQEILGDLHNLFGDTNAVH 408 (409)
T ss_pred HhhHHHHhcccCCCCCCEEe
Confidence 99999999999999999764
No 6
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=100.00 E-value=1e-60 Score=473.22 Aligned_cols=334 Identities=47% Similarity=0.799 Sum_probs=284.6
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCC
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCK 128 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k 128 (405)
+| |+|+||+++|++|+++|++.+|+.+++||+|||+++.|++.+.+.|+||+|+|++|++.++++|+++++|+|+||.|
T Consensus 1 ~t-P~~vid~~~l~~N~~~~~~~~~~~~~~~avKAN~~~~v~~~l~~~G~g~~vaS~~E~~~~~~~G~~~~~i~~~~~~k 79 (362)
T cd00622 1 ET-PFLVVDLGDVVRKYRRWKKALPRVRPFYAVKCNPDPAVLRTLAALGAGFDCASKGEIELVLGLGVSPERIIFANPCK 79 (362)
T ss_pred CC-CEEEEeHHHHHHHHHHHHHHCCCCeEEEEeccCCCHHHHHHHHHcCCCeEecCHHHHHHHHHcCCCcceEEEcCCCC
Confidence 36 99999999999999999999998899999999999999999999999999999999999999999988999999999
Q ss_pred CHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEE
Q 037610 129 PVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVV 208 (405)
Q Consensus 129 ~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~ 208 (405)
++++++.|+++|+..+++||++|++++.+..++.++.+||+++.+.+ ....+||||+ +++++.++++.+++.++++.
T Consensus 80 ~~~~l~~a~~~gi~~~~~ds~~el~~l~~~~~~~~v~vri~~~~~~~-~~~~~sRfGi--~~~~~~~~~~~~~~~~~~~~ 156 (362)
T cd00622 80 SISDIRYAAELGVRLFTFDSEDELEKIAKHAPGAKLLLRIATDDSGA-LCPLSRKFGA--DPEEARELLRRAKELGLNVV 156 (362)
T ss_pred CHHHHHHHHHcCCCEEEECCHHHHHHHHHHCCCCEEEEEEeeCCCCC-CCcccCCCCC--CHHHHHHHHHHHHHcCCEEE
Confidence 99999999999987678899999999999888889999999876542 2334689999 88999999988777789999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhC-----------CC--C------chhHH---HHHHHHHhCCCCCcEEE
Q 037610 209 GVSFHVGSEATNFAAFRGAIAAAKAVFDTAART-----------SN--N------KMRKL---FKLIFRELLPGSSLKVI 266 (405)
Q Consensus 209 Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~-----------G~--~------~~~~l---i~~~l~~~~~~~~~~l~ 266 (405)
|||+|+||+..+.+.+.++++++.++++.+++. |+ + +++.+ ++..+.+++..+.++++
T Consensus 157 Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~GGG~~~~y~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 236 (362)
T cd00622 157 GVSFHVGSQCTDPSAYVDAIADAREVFDEAAELGFKLKLLDIGGGFPGSYDGVVPSFEEIAAVINRALDEYFPDEGVRII 236 (362)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCcCEEEeCCCcCcccCCCCCCHHHHHHHHHHHHHHhCCcCCCeEE
Confidence 999999999888899999999998888877543 22 1 11211 44455666655578999
Q ss_pred ECCchhhhccceeEEEEEEEEEEeCC---eeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeEEEec
Q 037610 267 SEPGRFFAASAFTLYAQIIGKRVRGE---LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFG 343 (405)
Q Consensus 267 ~EPGr~lv~~a~~l~t~V~~~k~~~~---~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G 343 (405)
+||||+++++||+|+|+|+++|+.++ .+.+++++|+++.+.+.+|..++++..++..... ....++++|+|
T Consensus 237 ~EpGr~lv~~ag~l~t~V~~vk~~~~~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~G 310 (362)
T cd00622 237 AEPGRYLVASAFTLAVNVIAKRKRGDDDRERWYYLNDGVYGSFNEILFDHIRYPPRVLKDGGR------DGELYPSSLWG 310 (362)
T ss_pred EeCCchhccceEEEEEEEEEEEecCCCCceEEEEEcCCeecchhhhhhccCCceeEEecCCCC------CCCeeeEEEEc
Confidence 99999999999999999999998643 2566777788888888777776643344432210 22457899999
Q ss_pred cCcCCCCeeecCCCCCC-CCCCCEEEEcCCCccccccCCCCCCCCCCCce
Q 037610 344 PTCDAFDEVFTGHKLPE-LEVNDWLVFSEMGAYTTACGTNFNGYSTVAIP 392 (405)
Q Consensus 344 ~~C~~~D~l~~~~~lp~-l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~ 392 (405)
|+|+++|++..++.+|+ +++||+|+|.++|||+++|+++||++++|+++
T Consensus 311 ~~C~~~D~l~~~~~lp~~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v 360 (362)
T cd00622 311 PTCDSLDVIYEDVLLPEDLAVGDWLLFENMGAYTTAYASTFNGFPPPKIV 360 (362)
T ss_pred CCCCcccEecccCcCcccCCCCCEEEEcCCCCccccccCCCCCCCCCeeE
Confidence 99999999999999997 99999999999999999999999999999864
No 7
>PLN02537 diaminopimelate decarboxylase
Probab=100.00 E-value=2.2e-60 Score=477.71 Aligned_cols=334 Identities=25% Similarity=0.315 Sum_probs=278.6
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCC
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLP--MIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANP 126 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp 126 (405)
+| |+|+||+++|++|+++|++.++ +++++||+|||+++.|++.+.++|++++|+|..|++.++++|+++++|+|+||
T Consensus 17 ~t-P~~v~d~~~l~~N~~~~~~~~~~~~~~i~yavKaN~~~~il~~l~~~G~~~~~~S~~E~~~al~~G~~~~~ii~~g~ 95 (410)
T PLN02537 17 KR-PFYLYSKPQITRNYEAYKEALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGN 95 (410)
T ss_pred CC-CeEEEeHHHHHHHHHHHHHHhccCCceEEEEehhcCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCcceEEEECC
Confidence 79 9999999999999999999998 45699999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCC--CCCCCC---CCCCCCCCChhhHHHHH
Q 037610 127 CKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDS--GAKYPL---DSKYGAGHHPQEIMPLL 197 (405)
Q Consensus 127 ~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~--~~~~~~---~srfGi~~~~~e~~~~~ 197 (405)
.|++++++.|+++|+. +++||++||++|.+.+ +..+++|||+|+.+. +..+++ ++|||+ +.+++.+++
T Consensus 96 ~k~~~~l~~a~~~gv~-i~ids~~el~~l~~~a~~~~~~~~v~lRvnp~~~~~~~~~i~tG~~~sRfGi--~~~~~~~~~ 172 (410)
T PLN02537 96 GKLLEDLVLAAQEGVF-VNVDSEFDLENIVEAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI--RNEKLQWFL 172 (410)
T ss_pred CCCHHHHHHHHHCCCE-EEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCCccccCCCCCCCCC--CHHHHHHHH
Confidence 9999999999999994 8999999999998754 356899999987654 223344 389999 889999999
Q ss_pred HHHHHc--CCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCchhHH----------------------HHHH
Q 037610 198 KAAEAS--GLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKL----------------------FKLI 253 (405)
Q Consensus 198 ~~~~~~--~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~~~~~~l----------------------i~~~ 253 (405)
+.+++. ++++.|+|+|+||++.+.+.|.++++.+.++++.+++.|+ .++++ +.+.
T Consensus 173 ~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~idiGGGf~v~y~~~~~~~~~~~~~~~~ 251 (410)
T PLN02537 173 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGF-ELSYLNIGGGLGIDYYHAGAVLPTPRDLIDT 251 (410)
T ss_pred HHHHhCCCCCcEEEEEeccCCCCCchHHHHHHHHHHHHHHHHHHHcCC-CccEEEcCCCccccCCCCCCCCCCHHHHHHH
Confidence 988774 8999999999999988999999999888888887764332 11111 3334
Q ss_pred HHHhCCCCCcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCCC-hhhhhhccccccccCCCCCCCCccCC
Q 037610 254 FRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSL-AWVTCDEAIAKCTPLPFASSFTTSKG 332 (405)
Q Consensus 254 l~~~~~~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (405)
+.+.+...++++++|||||++++|++|+++|+++|+.+ +++|+++||+++.+ .+.+|..+++ ..++.....
T Consensus 252 i~~~~~~~~~~li~EPGR~lva~ag~lv~~V~~~k~~~-~~~~~~~dgg~~~~~~p~~~~~~~~-~~~~~~~~~------ 323 (410)
T PLN02537 252 VRELVLSRDLTLIIEPGRSLIANTCCFVNRVTGVKTNG-TKNFIVIDGSMAELIRPSLYDAYQH-IELVSPPPP------ 323 (410)
T ss_pred HHHHHHhcCCEEEEccChhhhccceEEEEEEEEEeecC-CcEEEEEeCccccccchHhhccccc-eeEccCCCC------
Confidence 44444434789999999999999999999999999864 37888889877655 4667765543 222222111
Q ss_pred CCceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCCceEEE
Q 037610 333 LTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYV 395 (405)
Q Consensus 333 ~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~~~~ 395 (405)
.....+++|+||+|+++|++.+++.||++++||+|+|.++|||+++|+++||++++|.++++.
T Consensus 324 ~~~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~~~~~GAY~~s~~s~fn~~~~p~~v~~~ 386 (410)
T PLN02537 324 DAEVSTFDVVGPVCESADFLGKDRELPTPPKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVE 386 (410)
T ss_pred CCCceEEEEecCccCCCCEEEEcccCCCCCCCCEEEEeCCCcccHhhhHHhcCCCCCeEEEEE
Confidence 124467899999999999999999999999999999999999999999999999999865543
No 8
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=100.00 E-value=2.4e-60 Score=479.09 Aligned_cols=347 Identities=25% Similarity=0.326 Sum_probs=285.4
Q ss_pred cCCcHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCCC--CceeeeeccCCcHHHHHHHHHcCCeEEEcCHHH
Q 037610 30 TKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPM--IHPHYAVKCNPEPALLEALAALGSNFDCGSRSE 107 (405)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~~--~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E 107 (405)
.+.++.+++++ ++| |+||||++.|++|++.|++.+++ ++++||+|||+++.|++.+.+.|+||||+|++|
T Consensus 12 ~~~~~~~l~~~-------~~t-P~~v~d~~~l~~n~~~l~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~dvaS~~E 83 (417)
T TIGR01048 12 EGVDLLELAEE-------FGT-PLYVYDEETIRERFRAYKEAFGGAYSLVCYAVKANSNLALLRLLAELGSGFDVVSGGE 83 (417)
T ss_pred CCeeHHHHHHh-------hCC-CEEEEeHHHHHHHHHHHHHhhCCCCceEEEEehhCCCHHHHHHHHHcCCcEEEeCHHH
Confidence 45666555443 689 99999999999999999999985 899999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCC----CCeEEEEEecCCCC--CCCCCC-
Q 037610 108 IEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHP----KSDLLIRIKSPDDS--GAKYPL- 180 (405)
Q Consensus 108 ~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~----~~~v~lRi~~~~~~--~~~~~~- 180 (405)
++.++++|+++++|+|+||.|+++++++|+++|+..+++||++||++|.+.++ ..+++||||++.+. +.++++
T Consensus 84 ~~~~~~~G~~~~~I~~~gp~k~~~~l~~a~~~gi~~i~iDs~~el~~l~~~a~~~~~~~~v~lRIn~~~~~~~~~~~~~g 163 (417)
T TIGR01048 84 LYRALAAGFPPEKIVFNGNGKSRAELERALELGIRCINVDSESELELLNEIAPELGKKARVSLRVNPGVDAKTHPYISTG 163 (417)
T ss_pred HHHHHHcCCCcceEEEeCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCCCeecC
Confidence 99999999999999999999999999999999996589999999999998754 35899999998654 233444
Q ss_pred --CCCCCCCCChhhHHHHHHHHHH-cCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCC-----------C--C
Q 037610 181 --DSKYGAGHHPQEIMPLLKAAEA-SGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTS-----------N--N 244 (405)
Q Consensus 181 --~srfGi~~~~~e~~~~~~~~~~-~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G-----------~--~ 244 (405)
++|||+ +.+++.++++.+++ .++++.|||+|+||+..+.+.+.++++.+.++++.+++.| + +
T Consensus 164 ~~~srfGi--~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g~~l~~idiGGG~~~~ 241 (417)
T TIGR01048 164 LEDSKFGI--DVEEALEAYLYALQLPHLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEELKAEGIDLEFLDLGGGLGIP 241 (417)
T ss_pred CCCCCCCC--CHHHHHHHHHHHHhCCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCccEEEeCCccccc
Confidence 389999 89999999988776 4799999999999998899999999999888888765432 2 0
Q ss_pred --------chhHH---HHHHHHHhCC-CCCcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCCC-hhhhh
Q 037610 245 --------KMRKL---FKLIFRELLP-GSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSL-AWVTC 311 (405)
Q Consensus 245 --------~~~~l---i~~~l~~~~~-~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~~-~~~~~ 311 (405)
++..+ +...+++++. ..+++|++|||||++++|++++++|+++|..++ +.|+++|++.+.+ .+.+|
T Consensus 242 y~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~EPGR~lva~~g~lv~~V~~~k~~~~-~~~~~~d~g~~~~~~~~~~ 320 (417)
T TIGR01048 242 YTPEEEPPDPEEYAQAILAALEGYADLGLDPKLILEPGRSIVANAGVLLTRVGFVKEVGS-RNFVIVDAGMNDLIRPALY 320 (417)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEccCceeeccceEEEEEEEEEEecCC-CEEEEEeCCcccchhhhhc
Confidence 11111 4445555543 237899999999999999999999999998653 5677766655443 46677
Q ss_pred hccccccccCCCCCCCCccCCCCceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCCc
Q 037610 312 DEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAI 391 (405)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~ 391 (405)
+.+++. ..+.... .....++.|+||+|+++|++..++.+|++++||+|+|.++|||+++++++||++|+|++
T Consensus 321 ~~~~~~-~~~~~~~-------~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~ 392 (417)
T TIGR01048 321 GAYHHI-IVANRTN-------DAPTEVADVVGPLCESGDVLARDRELPEVEPGDLLAVFDAGAYGASMSSNYNSRPRPAE 392 (417)
T ss_pred cccceE-EEccCCC-------CCCceEEEEEeCCcCCCCEEeeccCCCCCCCCCEEEEeCCCcchHHHHHHhhCCCCCeE
Confidence 766543 2222111 12356889999999999999999999999999999999999999999999999999997
Q ss_pred eEEE
Q 037610 392 PTYV 395 (405)
Q Consensus 392 ~~~~ 395 (405)
+++.
T Consensus 393 v~~~ 396 (417)
T TIGR01048 393 VLVD 396 (417)
T ss_pred EEEE
Confidence 5553
No 9
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00 E-value=1.9e-60 Score=472.90 Aligned_cols=332 Identities=22% Similarity=0.303 Sum_probs=263.3
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCH
Q 037610 52 PFYLMDLGVVVSLYNHMISNLPM-IHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPV 130 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 130 (405)
||||||++.|++|+++|+++||+ ++++||+|||+++.|++++.+.|+||||+|.+|++.++++|+++++|+|+||+|+.
T Consensus 4 ~~~v~d~~~l~~~~~~l~~a~~~~~~~~yAvKaN~~~~il~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp~K~~ 83 (379)
T cd06836 4 AVGLYDLDGFRALVARLTAAFPAPVLHTFAVKANPLVPVLRLLAEAGAGAEVASPGELELALAAGFPPERIVFDSPAKTR 83 (379)
T ss_pred EEEEEcHHHHHHHHHHHHHhcCCCcEEEEEEecCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCCChhhEEEeCCCCCH
Confidence 89999999999999999999995 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEecCHHHHHHHHhHC-----CCCeEEEEEecCCCCC--CCC---CCCCCCCCCCChh--hHHHHHH
Q 037610 131 SHIKYAASVGVNLTTVDSVEELDKIRNWH-----PKSDLLIRIKSPDDSG--AKY---PLDSKYGAGHHPQ--EIMPLLK 198 (405)
Q Consensus 131 ~~l~~a~~~gv~~i~vds~~el~~i~~~~-----~~~~v~lRi~~~~~~~--~~~---~~~srfGi~~~~~--e~~~~~~ 198 (405)
++|+.|+++|+ .+++||++||++|.+++ ++.+++|||||+...+ ... ..++|||+ +.+ ++.++++
T Consensus 84 ~~L~~ai~~gv-~i~iDS~~El~~i~~~a~~~~~~~~~v~lRvnp~~~~~~~~~~~~~~~~skFG~--~~~~~~~~~~~~ 160 (379)
T cd06836 84 AELREALELGV-AINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGV--ALEDGARDEIID 160 (379)
T ss_pred HHHHHHHHCCC-EEEECCHHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCccccccCCCCCCCCc--CcchhHHHHHHH
Confidence 99999999999 58999999999999854 3578999999875432 112 23599999 777 5666665
Q ss_pred HHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh-------------CCCC----------chhHH---HHH
Q 037610 199 AAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAAR-------------TSNN----------KMRKL---FKL 252 (405)
Q Consensus 199 ~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~-------------~G~~----------~~~~l---i~~ 252 (405)
.+.. ...+.|||||+||++.+.+.|.+.++++.++++.+++ .|++ +++.+ +++
T Consensus 161 ~~~~-~~~l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~IDiGGGf~v~y~~~~~~~~~~~~~~~i~~ 239 (379)
T cd06836 161 AFAR-RPWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDITPTFADYAAALKA 239 (379)
T ss_pred HHhc-CCCeEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCccccCCCCCCCCCCHHHHHHHHHH
Confidence 4332 3457899999999998999998888887777666532 1220 11111 444
Q ss_pred HHHHhCCCCCcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCCC-hhhhhhcccccc-ccCCCCCCCCcc
Q 037610 253 IFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSL-AWVTCDEAIAKC-TPLPFASSFTTS 330 (405)
Q Consensus 253 ~l~~~~~~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~~-~~~~~~~~~~~~-~~l~~~~~~~~~ 330 (405)
.+.++++ .+++|++|||||++++|++|+|+|+++|... ++.|+++|++.+.+ .+..|...++.+ ..+.......
T Consensus 240 ~l~~~~~-~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~-~~~~~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 315 (379)
T cd06836 240 AVPELFD-GRYQLVTEFGRSLLAKCGTIVSRVEYTKSSG-GRRIAITHAGAQVATRTAYAPDDWPLRVTVFDANGEPK-- 315 (379)
T ss_pred HHHHHhc-cCcEEEEecChheeccceEEEEEEEEEEecC-CeEEEEEcCCccccchhhhccccCceEEeccccccccc--
Confidence 5555554 3689999999999999999999999998764 36787777655433 344443322111 1111111100
Q ss_pred CCCCceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCCceE
Q 037610 331 KGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPT 393 (405)
Q Consensus 331 ~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~~ 393 (405)
.....++.|+||+|+++|++..++.+|++++||+|+|.++|||+++|+++||++++|+++.
T Consensus 316 --~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fn~~~~p~~~~ 376 (379)
T cd06836 316 --TGPEVVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAYYFSSHSSYNSLPRPAVYG 376 (379)
T ss_pred --CCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcchHHHHHhhhCCCCCeEEE
Confidence 1234689999999999999999999999999999999999999999999999999998643
No 10
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=5.4e-60 Score=470.07 Aligned_cols=334 Identities=24% Similarity=0.354 Sum_probs=280.7
Q ss_pred CCCccEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcC
Q 037610 48 FDEVPFYLMDLGVVVSLYNHMISNLP--MIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 48 ~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
++| |+||+|++.|++|+++|++.++ +++++|++|||+++.|++.+.+.|.||+|+|.+|+++++++|+++++|+|+|
T Consensus 1 ~~t-P~~v~d~~~l~~n~~~l~~~~~~~~~~~~yavKaN~~~~v~~~l~~~G~g~~vaS~~E~~~~~~~G~~~~~I~~~~ 79 (373)
T cd06828 1 YGT-PLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGGELYRALKAGFPPERIVFTG 79 (373)
T ss_pred CCC-CEEEEcHHHHHHHHHHHHHhhCCCCcEEEEEehhCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCcccEEEeC
Confidence 578 9999999999999999999998 7999999999999999999999999999999999999999999998999999
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCC----CCeEEEEEecCCCC--CCCCCCC---CCCCCCCChhhHHHH
Q 037610 126 PCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHP----KSDLLIRIKSPDDS--GAKYPLD---SKYGAGHHPQEIMPL 196 (405)
Q Consensus 126 p~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~----~~~v~lRi~~~~~~--~~~~~~~---srfGi~~~~~e~~~~ 196 (405)
|.|+.+++++|+++|+..+++||++||++|.+.++ +.+++|||+++.+. +.+++++ +|||+ +.+++.++
T Consensus 80 p~k~~~~l~~a~~~g~~~~~ids~~el~~l~~~a~~~~~~~~v~lRv~~~~~~~~~~~~~~g~~~srfGi--~~~e~~~~ 157 (373)
T cd06828 80 NGKSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGI--PLEQALEA 157 (373)
T ss_pred CCCCHHHHHHHHHcCCeEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCCCeecCCCCCCCCC--CHHHHHHH
Confidence 99999999999999954689999999999998764 68999999987654 2334443 89999 89999999
Q ss_pred HHHHHH-cCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCC----------Cc-----------hhHH---HH
Q 037610 197 LKAAEA-SGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSN----------NK-----------MRKL---FK 251 (405)
Q Consensus 197 ~~~~~~-~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~----------~~-----------~~~l---i~ 251 (405)
++.++. .++++.|||+|+||+..+.+.+.++++++.++++.+++.|+ +. ++.+ +.
T Consensus 158 ~~~~~~~~~l~l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~idiGGG~~~~~~~~~~~~~~~~~~~~i~ 237 (373)
T cd06828 158 YRRAKELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIEEYAEAIA 237 (373)
T ss_pred HHHHHhCCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCCCcccCCCCCCCCHHHHHHHHH
Confidence 998887 79999999999999988899999999999998887754321 01 1111 45
Q ss_pred HHHHHhCC-CCCcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCC-CChhhhhhccccccccCCCCCCCCc
Q 037610 252 LIFRELLP-GSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFG-SLAWVTCDEAIAKCTPLPFASSFTT 329 (405)
Q Consensus 252 ~~l~~~~~-~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (405)
+.++++++ .+++++++||||+++++|++++|+|+++|..++ +.|+++|++.. .+.+.+|...++. .++....
T Consensus 238 ~~~~~~~~~~~~~~l~~EpGR~lv~~~g~lv~~V~~~k~~~~-~~~~~~d~g~~~~~~~~~~~~~~~~-~~~~~~~---- 311 (373)
T cd06828 238 EALKELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGG-KTFVGVDAGMNDLIRPALYGAYHEI-VPVNKPG---- 311 (373)
T ss_pred HHHHHHHccCCCceEEEecCcceeecceEEEEEEEEEEecCC-CEEEEEeCCcccchhhHhcCCccce-EEccCCC----
Confidence 56667765 458999999999999999999999999998653 56777776543 3445566655432 2232111
Q ss_pred cCCCCceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCCceE
Q 037610 330 SKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPT 393 (405)
Q Consensus 330 ~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~~ 393 (405)
....+++.|+||+|++.|++..+..+|++++||+|+|.++|||+++++++||++++|++++
T Consensus 312 ---~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~f~~~~~p~~v~ 372 (373)
T cd06828 312 ---EGETEKVDVVGPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMSSNYNSRPRPAEVL 372 (373)
T ss_pred ---CCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcchHHHHHHhhCCCCCcEEe
Confidence 1245789999999999999999999999999999999999999999999999999999754
No 11
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=100.00 E-value=4.7e-59 Score=468.07 Aligned_cols=334 Identities=21% Similarity=0.331 Sum_probs=268.8
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCC----CcEE
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSP----DRII 122 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~----~~Ii 122 (405)
+++| |+||||++.|++|++++++ ++ +++||+|||+++.|++++.++|+||||+|++|++.++++|++| ++|+
T Consensus 23 ~~~t-P~~v~d~~~l~~n~~~l~~-~~--~i~yavKan~~~~il~~~~~~G~g~dvaS~~E~~~a~~~G~~~~~~~~~Ii 98 (420)
T PRK11165 23 EYGT-PLWVYDADIIRRRIAQLRQ-FD--VIRFAQKACSNIHILRLMREQGVKVDAVSLGEIERALAAGYKPGTEPDEIV 98 (420)
T ss_pred HhCC-CEEEEcHHHHHHHHHHHhc-cC--cceEEehhCCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCCCCCCCeEE
Confidence 4689 9999999999999999986 76 6899999999999999999999999999999999999999998 5899
Q ss_pred EcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCC--CCCC---CCCCCCCCChhhHHHHH
Q 037610 123 YANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGA--KYPL---DSKYGAGHHPQEIMPLL 197 (405)
Q Consensus 123 ~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~--~~~~---~srfGi~~~~~e~~~~~ 197 (405)
|+||.|++++|++|++.|+ .+++||++||++|.+.+++.+++||||++.+.+. .+.+ +||||+ +.+++.+++
T Consensus 99 ~~gp~k~~~~l~~a~~~gv-~i~vDs~~el~~i~~~~~~~~v~lRvn~~~~~~~~~~~~~~~~~sKFGi--~~~~~~~~~ 175 (420)
T PRK11165 99 FTADVIDRATLARVVELKI-PVNAGSIDMLDQLGQVSPGHRVWLRINPGFGHGHSQKTNTGGENSKHGI--WHEDLPAAL 175 (420)
T ss_pred EeCCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHhcCCCcEEEEECCCCCCCCCCceecCCCCCCCCC--CHHHHHHHH
Confidence 9999999999999999999 5899999999999999988999999999765311 2222 489999 899999998
Q ss_pred HHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCC--C--------chhHH---H---HHH
Q 037610 198 KAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAA--------RTSN--N--------KMRKL---F---KLI 253 (405)
Q Consensus 198 ~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~--------~~G~--~--------~~~~l---i---~~~ 253 (405)
+.+++.++++.|||+|.||+. +.+.+.+.++.+.++++.+. +.|+ + +++.+ + ...
T Consensus 176 ~~~~~~~l~l~GlH~H~GS~~-~~~~~~~~~~~l~~~~~~~g~~~~~IdiGGGf~~~y~~~~~~~d~~~~~~~~~~~~~~ 254 (420)
T PRK11165 176 AVIQRYGLKLVGIHMHIGSGV-DYGHLEQVCGAMVRQVIELGQDIEAISAGGGLSIPYREGEEPVDTEHYFGLWDAARKR 254 (420)
T ss_pred HHHHhCCCcEEEEEEeccCCC-ChHHHHHHHHHHHHHHHHhCCCCcEEEeCCCcccCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 888888999999999999986 77777666655544443321 0122 0 11111 1 122
Q ss_pred HHHhCCCCCcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCCC-hhhhhhccccccccCCCCCCCCccCC
Q 037610 254 FRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSL-AWVTCDEAIAKCTPLPFASSFTTSKG 332 (405)
Q Consensus 254 l~~~~~~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (405)
+.+.++ .+++|++|||||++++|++++|+|+++|..+ +++|+++|++++.+ .+.+|..+++. .++....... +
T Consensus 255 ~~~~~~-~~~~l~~EPGR~lva~ag~lvt~V~~~K~~~-~~~~~i~D~G~n~l~~p~~~~~~~~~-~~~~~~~~~~---~ 328 (420)
T PRK11165 255 IARHLG-HPVKLEIEPGRFLVAESGVLVAQVRAVKQMG-SRHFVLVDAGFNDLMRPAMYGSYHHI-SVLAADGRSL---E 328 (420)
T ss_pred HHhhcC-CCceEEEccCcceeecceEEEEEEEEEEecC-CcEEEEEeCCcccCchhhhcccccce-EEecCCCccc---c
Confidence 233343 3579999999999999999999999999865 36788888876544 56788777642 3333211100 0
Q ss_pred CCceeeEEEeccCcCCCCeeecC-------CCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCCceEE
Q 037610 333 LTRTYNSTVFGPTCDAFDEVFTG-------HKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTY 394 (405)
Q Consensus 333 ~~~~~~~~v~G~~C~~~D~l~~~-------~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~~~ 394 (405)
....+++.|+||+|+++|++..+ +.+|++++||+|+|.++|||+++|+++||++|+|+++++
T Consensus 329 ~~~~~~~~v~Gp~C~~~D~l~~~~~~~~~~~~lP~l~~GD~l~i~~~GAY~~~~ss~fn~~~~p~~v~~ 397 (420)
T PRK11165 329 EAPTVDTVVAGPLCESGDVFTQQEGGVVETRALPQVQVGDYLVFHDTGAYGASMSSNYNSRPLLPEVLF 397 (420)
T ss_pred cCCceEEEEEeCCCCCCCEEeeccCcccceeECCCCCCCCEEEEecCCCCcHHHHHhhcCCCCCcEEEE
Confidence 11346899999999999999976 789999999999999999999999999999999997655
No 12
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=100.00 E-value=2.5e-58 Score=459.53 Aligned_cols=335 Identities=24% Similarity=0.348 Sum_probs=270.7
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcC
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLPM-IHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
+++| |+||||+++|++|+++|++.+|+ ++++|++|||+++.|++.+.+.|.||+|+|++|++.++++|+++++|+|+|
T Consensus 4 ~~~t-P~~v~d~~~l~~n~~~l~~~~~~~~~~~yavKan~~~~v~~~l~~~g~g~~vaS~~E~~~~~~~G~~~~~I~~~~ 82 (382)
T cd06839 4 AYGT-PFYVYDRDRVRERYAALRAALPPAIEIYYSLKANPNPALVAHLRQLGDGAEVASAGELALALEAGVPPEKILFAG 82 (382)
T ss_pred ccCC-CEEEEeHHHHHHHHHHHHHhcCCCcEEEEEeccCCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCHHHEEEeC
Confidence 6899 99999999999999999999984 899999999999999999999999999999999999999999988999999
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCC-CCC---CCCCCCCCCCChhhHHHHH
Q 037610 126 PCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSG-AKY---PLDSKYGAGHHPQEIMPLL 197 (405)
Q Consensus 126 p~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~-~~~---~~~srfGi~~~~~e~~~~~ 197 (405)
|.|+++++++++++|+..++|||++|+++|.+.+ +..+++||||++.+.+ ... ...+|||+ +.+++.+++
T Consensus 83 ~~k~~~~l~~a~~~g~~~i~vds~~el~~l~~~a~~~~~~~~v~lRin~~~~~~~~g~~~~~~~sKfG~--~~~~~~~~~ 160 (382)
T cd06839 83 PGKSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINPDFELKGSGMKMGGGPSQFGI--DVEELPAVL 160 (382)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCccccCCCCCCcCC--CHHHHHHHH
Confidence 9999999999999995468999999999998763 3579999999866431 111 12389999 999999999
Q ss_pred HHHHH-cCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh-CCC----------Cc-----------hhHH---HH
Q 037610 198 KAAEA-SGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAAR-TSN----------NK-----------MRKL---FK 251 (405)
Q Consensus 198 ~~~~~-~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~-~G~----------~~-----------~~~l---i~ 251 (405)
+.+++ .++++.|||+|.||+..+.+.+.++++++.++++.+.+ .|. .. +.-+ +.
T Consensus 161 ~~~~~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~idiGGG~~~~~~~~~~~~~~~~~~~~i~ 240 (382)
T cd06839 161 ARIAALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPLEFLDLGGGFGIPYFPGETPLDLEALGAALA 240 (382)
T ss_pred HHHHhCCCCcEEEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEecCccccccCCCCCCCCHHHHHHHHH
Confidence 98887 68999999999999988888888888887777765532 221 01 1111 33
Q ss_pred HHHHHhCC-CCCcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCC-CCCChhhh-----hhccccccccCCCC
Q 037610 252 LIFRELLP-GSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGK-FGSLAWVT-----CDEAIAKCTPLPFA 324 (405)
Q Consensus 252 ~~l~~~~~-~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~-~~~~~~~~-----~~~~~~~~~~l~~~ 324 (405)
..+.++.. .++++|++|||||++++|++++|+|+++|+.++ ++|+++|++ ++.+.+.+ |+..++. .+.. .
T Consensus 241 ~~l~~~~~~~~~~~l~~EPGR~l~~~ag~lv~~V~~~k~~~~-~~~~~~D~g~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 317 (382)
T cd06839 241 ALLAELGDRLPGTRVVLELGRYLVGEAGVYVTRVLDRKVSRG-ETFLVTDGGMHHHLAASGNFGQVLRRNYPL-AILN-R 317 (382)
T ss_pred HHHHHHhcCCCCceEEEecChhhhhhceEEEEEEEEEeecCC-CEEEEEECCcccchhhhcccccccccccee-EEcc-C
Confidence 44555433 357899999999999999999999999998643 667777764 33333332 3333321 1121 1
Q ss_pred CCCCccCCCCceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccC-CCCCCCCCCCceE
Q 037610 325 SSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACG-TNFNGYSTVAIPT 393 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~-~~fn~~~~p~~~~ 393 (405)
.. .....++.|+||+|+++|++..+..+|++++||+|+|.++|||+++|+ ++||++|+|++++
T Consensus 318 ~~------~~~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~~fn~~~~p~~~~ 381 (382)
T cd06839 318 MG------GEERETVTVVGPLCTPLDLLGRNVELPPLEPGDLVAVLQSGAYGLSASPLAFLSHPAPAEVL 381 (382)
T ss_pred CC------CCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEecCCCcccccChhhHhCCCCCCEEe
Confidence 11 124568999999999999999999999999999999999999999998 5999999999754
No 13
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=100.00 E-value=2.5e-58 Score=461.57 Aligned_cols=333 Identities=23% Similarity=0.357 Sum_probs=265.5
Q ss_pred CC-CccEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcC
Q 037610 48 FD-EVPFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 48 ~~-t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
++ | |+||||++.|++|+++|++.+| +++++||+|||+++.|++.+.+.|.||||+|.+|++.++++|+++++|+|+|
T Consensus 22 ~g~t-P~~v~d~~~l~~n~~~l~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E~~~~~~~G~~~~~I~~~g 100 (398)
T TIGR03099 22 AGGT-PFYAYDRGLVSERVAALRKALPEELAIHYAVKANPMPALLAHMAPLVDGFDVASAGELAVALDTGYDPGCISFAG 100 (398)
T ss_pred hCCC-CEEEEeHHHHHHHHHHHHHhccccCcEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCChhHEEEeC
Confidence 67 9 9999999999999999999998 4899999999999999999999889999999999999999999998899999
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCC-CCCCCC---CCCCCCCCChhhHHHHH
Q 037610 126 PCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDS-GAKYPL---DSKYGAGHHPQEIMPLL 197 (405)
Q Consensus 126 p~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~-~~~~~~---~srfGi~~~~~e~~~~~ 197 (405)
|.|+.++|++|+++|+ .+++||++||++|.+.+ +..+++|||+++.+. +....+ .+|||+ +.+++.+++
T Consensus 101 p~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~~~~~~v~LRin~~~~~~~~~~~~~~~~srFGi--~~~e~~~~~ 177 (398)
T TIGR03099 101 PGKTDAELRRALAAGV-LINVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSGMKMGGGAKQFGI--DAEQVPAAL 177 (398)
T ss_pred CCCCHHHHHHHHhCCC-EEEECCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCcccccCCCCCcCCC--CHHHHHHHH
Confidence 9999999999999999 69999999999998764 356899999986643 122333 399999 889999999
Q ss_pred HHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHH-HHHHHHhCC-----------C--C--------chhHH---HHH
Q 037610 198 KAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKA-VFDTAARTS-----------N--N--------KMRKL---FKL 252 (405)
Q Consensus 198 ~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~-~~~~~~~~G-----------~--~--------~~~~l---i~~ 252 (405)
+.+++.++++.|+|+|.||++.+.+.|.+.+++..+ +.+..++.| + + ++..+ +..
T Consensus 178 ~~~~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGG~~v~~~~~~~~~~~~~~~~~l~~ 257 (398)
T TIGR03099 178 AFIKAADLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAESAPAPVRVINIGGGFGIPYFPGNPPLDLAPVGAALAA 257 (398)
T ss_pred HHHHhCCCeEEEEEecccccCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEeCCcccCCCCCCCCCCCHHHHHHHHHH
Confidence 988888999999999999998887777655554433 333333222 1 0 01111 344
Q ss_pred HHHHhCC-CCCcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCC-CChhhh-----hhccccccccCCCCC
Q 037610 253 IFRELLP-GSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFG-SLAWVT-----CDEAIAKCTPLPFAS 325 (405)
Q Consensus 253 ~l~~~~~-~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~-~~~~~~-----~~~~~~~~~~l~~~~ 325 (405)
.+++++. .+++++++|||||++++|++++|+|+++|..++ ++|+++|++.+ .+.+.. +...+| ...... .
T Consensus 258 ~~~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~-~~~~~~d~g~~~~~~~~~~~~~~~~~~~~-~~~~~~-~ 334 (398)
T TIGR03099 258 LFARLRDALPEVEILLELGRYLVGEAGIYVCRVIDRKISRG-ETFLVTDGGLHHHLSASGNFGQVIRRNYP-VVIGNR-I 334 (398)
T ss_pred HHHHHhhcCCCCEEEEecChheeccceEEEEEEEEEEecCC-cEEEEEcCCccccccccccccchhccCce-eEEccC-C
Confidence 4555444 357899999999999999999999999997643 77888887543 333221 121222 111111 0
Q ss_pred CCCccCCCCceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccC-CCCCCCCCCCceE
Q 037610 326 SFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACG-TNFNGYSTVAIPT 393 (405)
Q Consensus 326 ~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~-~~fn~~~~p~~~~ 393 (405)
. .....++.|+||+|+++|++..++.+|++++||+|+|.++|||+++|+ ++||++|+|.+++
T Consensus 335 ~------~~~~~~~~i~G~~C~~~D~~~~~~~lp~~~~GD~l~~~~~GAY~~~~s~~~fn~~~~~~~v~ 397 (398)
T TIGR03099 335 G------GAVREIASIVGPLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAYGASASPLAFLGHPEAVELL 397 (398)
T ss_pred C------CCCceEEEEEeCCCCCCCEEeecCcCCCCCCCCEEEEcCCCCcchhhChHhhhCCCCCCEEe
Confidence 0 224578899999999999999999999999999999999999999999 6999999999754
No 14
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=100.00 E-value=3.6e-58 Score=456.16 Aligned_cols=332 Identities=32% Similarity=0.521 Sum_probs=278.6
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCH
Q 037610 52 PFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPV 130 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 130 (405)
|+|+||+++|++|+++|++.++ +++++|++|||+++.|++.+.+.|+||+|+|++|++.++++|+++++|+|+||.|++
T Consensus 2 P~~vid~~~l~~n~~~l~~~~~~~~~i~~avKan~~~~i~~~l~~~G~g~~vas~~E~~~~~~~G~~~~~iv~~gp~~~~ 81 (368)
T cd06810 2 PFYVYDLDIIRAHYAALKEALPSGVKLFYAVKANPNPHVLRTLAEAGTGFDVASKGELALALAAGVPPERIIFTGPAKSV 81 (368)
T ss_pred CEEEeeHHHHHHHHHHHHHhCCCCCeEEEEEccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCHHHEEEcCCCCCH
Confidence 9999999999999999999998 899999999999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCC-CC---CCCCCCCCCCChhhHHHHHHHHHH
Q 037610 131 SHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGA-KY---PLDSKYGAGHHPQEIMPLLKAAEA 202 (405)
Q Consensus 131 ~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~-~~---~~~srfGi~~~~~e~~~~~~~~~~ 202 (405)
+++++++++|+..+++||++|+++|.+.+ ++.+++|||+++++.+. .. ...+|||+ +.+++.++++.+++
T Consensus 82 ~~l~~~~~~~~~~~~vds~~el~~l~~~~~~~~~~~~v~lrin~g~~~~~~~~~~~~~~srfGi--~~~e~~~~~~~~~~ 159 (368)
T cd06810 82 SEIEAALASGVDHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGL--SLSEARAALERAKE 159 (368)
T ss_pred HHHHHHHHCCCCEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcccCccCCCCCCcCC--CHHHHHHHHHHHHh
Confidence 99999999994368999999999998765 67899999999875311 11 23489999 89999999998877
Q ss_pred cCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCC-----------C--C------chhHH---HHHHHHHhCC-
Q 037610 203 SGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTS-----------N--N------KMRKL---FKLIFRELLP- 259 (405)
Q Consensus 203 ~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G-----------~--~------~~~~l---i~~~l~~~~~- 259 (405)
.++++.|||+|+||+..+.+.+.+.++++.++++.+++.| + + +++.+ ++..+.++++
T Consensus 160 ~~l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g~~~~~id~GGG~~~~y~~~~~~~~~~~~~i~~~~~~~~~~ 239 (368)
T cd06810 160 LDLRLVGLHFHVGSQILDLETIVQALSDARELIEELVEMGFPLEMLDLGGGLGIPYDEQPLDFEEYAALINPLLKKYFPN 239 (368)
T ss_pred CCCcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcccccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 6699999999999998899999999999988888776433 2 0 11111 4455556654
Q ss_pred CCCcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCCChhhh-hhccccccccCCCCCCCCccCCCCceee
Q 037610 260 GSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVT-CDEAIAKCTPLPFASSFTTSKGLTRTYN 338 (405)
Q Consensus 260 ~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (405)
.+.+++++||||+++++|++|+|+|+++|..++.+.+++++|+++.+.+.+ ++..++ +.++..... .....+
T Consensus 240 ~~~~~l~~EpGr~l~~~ag~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~ 312 (368)
T cd06810 240 DPGVTLILEPGRYIVAQAGVLVTRVVAVKVNGGRFFAVVDGGMNHSFRPALAYDAYHP-ITPLKAPGP------DEPLVP 312 (368)
T ss_pred CCCcEEEEecChhhhhhceEEEEEEEEEEecCCcEEEEEeCccccccccccccCCcce-eEEeCCCcc------cCCcee
Confidence 357899999999999999999999999998765456666677777777765 444432 344432211 124578
Q ss_pred EEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCCce
Q 037610 339 STVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIP 392 (405)
Q Consensus 339 ~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~ 392 (405)
+.|+||+|+++|++..+..+|++++||+|+|.++|||+++++++||++++|+++
T Consensus 313 ~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v 366 (368)
T cd06810 313 ATLAGPLCDSGDVIGRDRLLPELEVGDLLVFEDMGAYGFSESSNFNSHPRPAEY 366 (368)
T ss_pred EEEECCCCCCCcEEeecccCCCCCCCCEEEEcCCCCCchhhcccccCCCCCcEE
Confidence 999999999999999999999999999999999999999999999999999864
No 15
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=100.00 E-value=4.5e-58 Score=456.47 Aligned_cols=335 Identities=19% Similarity=0.226 Sum_probs=269.3
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCH
Q 037610 52 PFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPV 130 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 130 (405)
|+||||+++|++|+++|++.+| +++++||+|||+++.|++++.+.|.||+|+|++|++.++++| ++.+|+|+||.|++
T Consensus 3 ~~yv~d~~~l~~N~~~l~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E~~~~~~~~-~~~~I~~~gp~k~~ 81 (377)
T cd06843 3 CAYVYDLAALRAHARALRASLPPGCELFYAIKANSDPPILRALAPHVDGFEVASGGEIAHVRAAV-PDAPLIFGGPGKTD 81 (377)
T ss_pred EEEEEcHHHHHHHHHHHHHhcCCCCeEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHhcC-CCCeEEEeCCCCCH
Confidence 9999999999999999999998 789999999999999999999988999999999999999998 56789999999999
Q ss_pred HHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCC--CCCCCCC---CCCCCCCChhhHHHHHHHHH
Q 037610 131 SHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDS--GAKYPLD---SKYGAGHHPQEIMPLLKAAE 201 (405)
Q Consensus 131 ~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~--~~~~~~~---srfGi~~~~~e~~~~~~~~~ 201 (405)
++++.|+++|+..++|||++||++|.+.+ ++.+++|||+++.+. +..+.++ +|||+ +.+++.++++.++
T Consensus 82 ~~l~~a~~~gi~~i~vds~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~--~~~~~~~~~~~~~ 159 (377)
T cd06843 82 SELAQALAQGVERIHVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGI--DEADLPDALELLR 159 (377)
T ss_pred HHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceecCCCCCCCCc--CHHHHHHHHHHHH
Confidence 99999999998767899999999998753 457999999997652 2233443 79999 8999999999887
Q ss_pred H-cCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH-HhC-----------CC--C--------chhHH---HHHHHH
Q 037610 202 A-SGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTA-ART-----------SN--N--------KMRKL---FKLIFR 255 (405)
Q Consensus 202 ~-~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~-~~~-----------G~--~--------~~~~l---i~~~l~ 255 (405)
+ .++++.|||+|+||++.+.+.|.+.++.+.++++.+ ++. |+ + +++.+ +.+.++
T Consensus 160 ~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~idiGGGf~~~y~~~~~~~~~~~~~~~i~~~~~ 239 (377)
T cd06843 160 DLPNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLDLDVVNVGGGIGVNYADPEEQFDWAGFCEGLDQLLA 239 (377)
T ss_pred hCCCccEEEEEEEcCcCcCChHHHHHHHHHHHHHHHHHHHHhCCCCcEEEecCccccccCCCCCCCCHHHHHHHHHHHHH
Confidence 7 489999999999999999999988888766655443 222 22 0 01111 333344
Q ss_pred HhCCCCCcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCCC-hhhhhhccccccccCCCCCCC-CccCCC
Q 037610 256 ELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSL-AWVTCDEAIAKCTPLPFASSF-TTSKGL 333 (405)
Q Consensus 256 ~~~~~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~~-~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 333 (405)
+++ .++++++|||||++++|++++|+|+++|..++ ++|+++||+++.+ .+..|+.+++. ..+...... ....+.
T Consensus 240 ~~~--~~~~l~~EpGR~lva~ag~lv~~V~~~k~~~~-~~~~~~d~g~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~ 315 (377)
T cd06843 240 EYE--PGLTLRFECGRYISAYCGYYVTEVLDLKRSHG-EWFAVLRGGTHHFRLPAAWGHNHPF-SVLPVEEWPYPWPRPS 315 (377)
T ss_pred hcC--CCCEEEEccChhhhcCceEEEEEEEEEeecCC-cEEEEEeCccccccchHHhcCCCce-Eecccccccccccccc
Confidence 432 47899999999999999999999999998653 7888888876554 46667665532 111111100 000001
Q ss_pred CceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccCC-CCCCCCCCCceE
Q 037610 334 TRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGT-NFNGYSTVAIPT 393 (405)
Q Consensus 334 ~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~-~fn~~~~p~~~~ 393 (405)
....+++|+||+|+++|++.+++.+|++++||+|+|.++|||+++|++ +||++|+|++++
T Consensus 316 ~~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~i~~~GAY~~~~s~~~fn~~~~p~~v~ 376 (377)
T cd06843 316 VRDTPVTLVGQLCTPKDVLARDVPVDRLRAGDLVVFPLAGAYGWNISHHDFLMHPHPERIY 376 (377)
T ss_pred CCceEEEEEeCCCCCCCEEeeccccCCCCCCCEEEEcCCCccchhhchhhhhCCCCCCEEe
Confidence 245689999999999999999999999999999999999999999996 999999999754
No 16
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=100.00 E-value=6.9e-58 Score=455.49 Aligned_cols=330 Identities=24% Similarity=0.315 Sum_probs=272.1
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhC----CCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEE
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNL----PMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRII 122 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~----~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii 122 (405)
+++| |+|+||++.|++|++++++.+ ++++++|+||||++++|++.+.+.|++++|+|.+|++.++++|+++++|+
T Consensus 4 ~~~t-P~~v~d~~~l~~n~~~l~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~~~dvaS~~E~~~~~~~G~~~~~Ii 82 (379)
T cd06841 4 SYGS-PFFVFDEDALRENYRELLGAFKKRYPNVVIAYSYKTNYLPAICKILHEEGGYAEVVSAMEYELALKLGVPGKRII 82 (379)
T ss_pred hcCC-CeEEEeHHHHHHHHHHHHHHHhhcCCCeEEEEEehhcccHHHHHHHHHcCCeEEEeCHHHHHHHHHcCCChHHEE
Confidence 5789 999999999999999999888 57889999999999999999999999999999999999999999988999
Q ss_pred EcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHH
Q 037610 123 YANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLK 198 (405)
Q Consensus 123 ~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~ 198 (405)
|+||.|+++++++|+++|+ .+++||++||++|.+.+ ++.+++|||+++.+.+ ..+|||+ +.+|+.++++
T Consensus 83 ~~g~~k~~~~l~~a~~~g~-~i~ids~~el~~l~~~~~~~~~~~~v~lRv~~~~g~~----~~~rfGi--~~~e~~~~~~ 155 (379)
T cd06841 83 FNGPYKSKEELEKALEEGA-LINIDSFDELERILEIAKELGRVAKVGIRLNMNYGNN----VWSRFGF--DIEENGEALA 155 (379)
T ss_pred EECCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHhcCCcceEEEEECCCCCCC----CCCCCCC--chhhhHHHHH
Confidence 9999999999999999998 59999999999998754 3478999999865321 3499999 8888877776
Q ss_pred HHHH----cCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH---------hCCC---C-c------------hhHH
Q 037610 199 AAEA----SGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAA---------RTSN---N-K------------MRKL 249 (405)
Q Consensus 199 ~~~~----~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~---------~~G~---~-~------------~~~l 249 (405)
.++. .++++.|||+|+||+..+.+.|.++++++.++++.+. +.|+ + . ++.+
T Consensus 156 ~~~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGG~~~~y~~~~~~~~~~~~~~~~~~ 235 (379)
T cd06841 156 ALKKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRLFGLELEYLDLGGGFPAKTPLSLAYPQEDTVPDPEDY 235 (379)
T ss_pred HHHHhhcCCCeeEEEEEecCCCccCChHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCcCcCccccccccCCCCCHHHH
Confidence 6554 3899999999999999899999999999888887761 1132 0 0 1111
Q ss_pred ---HHHHHHHhCC--CCCcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCCChhhhhhccccccccCCCC
Q 037610 250 ---FKLIFRELLP--GSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFA 324 (405)
Q Consensus 250 ---i~~~l~~~~~--~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~ 324 (405)
+...++++++ .+++++++|||||++++||+++|+|+++|... ++.|+++|++++.+... |...++ ..++...
T Consensus 236 ~~~i~~~l~~~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~~k~~~-~~~~~~~d~g~~~~~~~-~~~~~~-~~~~~~~ 312 (379)
T cd06841 236 AEAIASTLKEYYANKENKPKLILEPGRALVDDAGYLLGRVVAVKNRY-GRNIAVTDAGINNIPTI-FWYHHP-ILVLRPG 312 (379)
T ss_pred HHHHHHHHHHHhhcCCCCCEEEEecCcceeccceEEEEEEEEEEEcC-CcEEEEEeCCcccCcCc-ccCCce-EEEeccC
Confidence 4556677763 35789999999999999999999999999865 37888888876665443 444332 2222211
Q ss_pred CCCCccCCCCceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCCceEE
Q 037610 325 SSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTY 394 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~~~ 394 (405)
.. ....+++.|+|++|+++|++..++.+|++++||+|+|.++|||+++|+++| ++++|+++++
T Consensus 313 ~~------~~~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~s~~f-~~~~p~~v~~ 375 (379)
T cd06841 313 KE------DPTSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAYNMTQSNQF-IRPRPAVYLI 375 (379)
T ss_pred CC------CCCcceEEEECCCcCCCCEEeeCCcCCCCCCCCEEEEeCCCCCChhhCccc-cCCCCcEEEE
Confidence 11 124568999999999999999999999999999999999999999999999 5888886544
No 17
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=100.00 E-value=4.7e-58 Score=450.71 Aligned_cols=320 Identities=16% Similarity=0.119 Sum_probs=247.9
Q ss_pred cEEEEeHHHHHHHHHHHHHhC--CCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCC
Q 037610 52 PFYLMDLGVVVSLYNHMISNL--PMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKP 129 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~--~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 129 (405)
|+||||++.|++|+++|++++ |+++++||+|||+++.|+++|+++|+||||+|.+|+++++.+ ++++ +++.||.|+
T Consensus 2 P~yv~d~~~i~~~~~~~~~~~~~~~~~i~YAvKaN~~~~il~~l~~~G~g~DvaS~~El~~a~~~-~~~~-~i~~~~~k~ 79 (346)
T cd06829 2 PCYVLDEAKLRRNLEILKRVQERSGAKILLALKAFSMWSVFPLIREYLDGTTASSLFEARLGREE-FGGE-VHTYSPAYR 79 (346)
T ss_pred CeEEeeHHHHHHHHHHHHHHHhccCCEEEEEEhhcCCHHHHHHHHHhCCccEecCHHHHHHHHHH-CCCc-eEEECCCCC
Confidence 999999999999999999865 689999999999999999999999999999999999999987 3444 444588999
Q ss_pred HHHHHHHHHcCCcEEEecCHHHHHHHHhHCC--CCeEEEEEecCCCCCC--CCC---CCCCCCCCCChhhHHHHHHHHHH
Q 037610 130 VSHIKYAASVGVNLTTVDSVEELDKIRNWHP--KSDLLIRIKSPDDSGA--KYP---LDSKYGAGHHPQEIMPLLKAAEA 202 (405)
Q Consensus 130 ~~~l~~a~~~gv~~i~vds~~el~~i~~~~~--~~~v~lRi~~~~~~~~--~~~---~~srfGi~~~~~e~~~~~~~~~~ 202 (405)
.++|+.|++.|+ .+++||++||++|.+.++ +.+++|||||+.+.+. .++ .++|||+ +.+++.+.
T Consensus 80 ~~el~~a~~~~~-~~~~Ds~~EL~~l~~~~~~~~~~v~lRvnp~~~~~~~~~~~~~~~~sKFG~--~~~~~~~~------ 150 (346)
T cd06829 80 DDEIDEILRLAD-HIIFNSLSQLERFKDRAKAAGISVGLRINPEYSEVETDLYDPCAPGSRLGV--TLDELEEE------ 150 (346)
T ss_pred HHHHHHHHHcCC-EEEECCHHHHHHHHHHHhccCCeEEEEECCCCCCCCCceecCCCCCCCCCC--ChHHhhhh------
Confidence 999999999988 699999999999999877 7899999999865421 122 3599999 88865532
Q ss_pred cCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCC--C----chhHHHHHHHHHhCCCCCcEEEEC
Q 037610 203 SGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAA--------RTSN--N----KMRKLFKLIFRELLPGSSLKVISE 268 (405)
Q Consensus 203 ~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~--------~~G~--~----~~~~li~~~l~~~~~~~~~~l~~E 268 (405)
.++++.|||||+||+. +.+.|.++++.+.+++.... +.|+ + +++. +.+.+++...+.++++++|
T Consensus 151 ~~~~v~Glh~HvGS~~-~~~~~~~~~~~~~~~~~~~~~~~~~lDiGGGf~v~~~~~~~~~-~~~~i~~~~~~~~~~li~E 228 (346)
T cd06829 151 DLDGIEGLHFHTLCEQ-DFDALERTLEAVEERFGEYLPQLKWLNLGGGHHITRPDYDVDR-LIALIKRFKEKYGVEVYLE 228 (346)
T ss_pred hhcCceEEEEccCccc-CHHHHHHHHHHHHHHHHHHHhcCcEEEcCCCcCCCcCCCCHHH-HHHHHHHHHHHhCCEEEEe
Confidence 2468899999999998 99999988888777764431 1243 1 1222 2333333322226899999
Q ss_pred CchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCCChhhhhh-ccccccccCCCCCCCCccCCCCceeeEEEeccCcC
Q 037610 269 PGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCD-EAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCD 347 (405)
Q Consensus 269 PGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~~C~ 347 (405)
||||++++|++++|+|+++|+.+ +.|+++|++++.+....+. .++ +........ .....+++|+||+|+
T Consensus 229 PGR~lva~ag~lvt~V~~~K~~~--~~~~~~d~g~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~v~Gp~C~ 298 (346)
T cd06829 229 PGEAVALNTGYLVATVLDIVENG--MPIAILDASATAHMPDVLEMPYR--PPIRGAGEP------GEGAHTYRLGGNSCL 298 (346)
T ss_pred CchhhhhcceEEEEEEEEEEEcC--ceEEEEeCChhhcCchhhccCCC--ccccCCCCC------CCCceEEEEEcCCCC
Confidence 99999999999999999999763 6778888755433222221 111 111111100 123468899999999
Q ss_pred CCCeeecCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCCceEE
Q 037610 348 AFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTY 394 (405)
Q Consensus 348 ~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~~~ 394 (405)
++|++......|++++||+|+|.++|||+++|+++||++++|+++++
T Consensus 299 s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~s~ss~fn~~~~p~~v~~ 345 (346)
T cd06829 299 AGDVIGDYSFDEPLQVGDRLVFEDMAHYTMVKTNTFNGVRLPSIAIR 345 (346)
T ss_pred cccEEeecccCCCCCCCCEEEEeCchhhhhhhhccccCCCCCeEEec
Confidence 99999864433479999999999999999999999999999996543
No 18
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=1.4e-57 Score=492.58 Aligned_cols=334 Identities=22% Similarity=0.323 Sum_probs=282.3
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhC--CCCCCcEEEc
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLL--DVSPDRIIYA 124 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~--G~~~~~Ii~~ 124 (405)
+.+| |+||||++.|++|+++|++.++..+++||+|||+++.|++.+.+.|+||||+|.+|+++++++ |+++++|+|+
T Consensus 500 ~~~t-P~yV~d~~~i~~n~~~l~~~~~~~~i~yAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~~G~~~~~Ii~~ 578 (861)
T PRK08961 500 DAGS-PCYVYHLPTVRARARALAALAAVDQRFYAIKANPHPAILRTLEEEGFGFECVSIGELRRVFELFPELSPERVLFT 578 (861)
T ss_pred ccCC-CEEEEEHHHHHHHHHHHHhcCCCCcEEEEeecCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHhcCCCCCCeEEEC
Confidence 4589 999999999999999999877778899999999999999999999999999999999999998 9999999999
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCC--CCCC---CCCCCCCCCChhhHHHHHHH
Q 037610 125 NPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSG--AKYP---LDSKYGAGHHPQEIMPLLKA 199 (405)
Q Consensus 125 gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~--~~~~---~~srfGi~~~~~e~~~~~~~ 199 (405)
||.|+.++|+.|+++|+ .+++||++||++|.+.+++.+++|||+|+.+.+ ..+. ..+|||+ +.+++.++++.
T Consensus 579 gp~K~~~~l~~A~~~gv-~i~vDS~~EL~~i~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFGi--~~~~~~~~~~~ 655 (861)
T PRK08961 579 PNFAPRAEYEAAFALGV-TVTLDNVEPLRNWPELFRGREVWLRIDPGHGDGHHEKVRTGGKESKFGL--SQTRIDEFVDL 655 (861)
T ss_pred CCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHhCCCCcEEEEECCCCCCCCCcccccCCCCCCCCC--CHHHHHHHHHH
Confidence 99999999999999999 489999999999999998899999999987542 2222 2489999 99999999999
Q ss_pred HHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh-------CCCCchhH--------H--HHHHHHHhCC-CC
Q 037610 200 AEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAAR-------TSNNKMRK--------L--FKLIFRELLP-GS 261 (405)
Q Consensus 200 ~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~-------~G~~~~~~--------l--i~~~l~~~~~-~~ 261 (405)
++..++++.|+|||+||+..+.+.|.+.++.+.++.+.+.. .|+ ++++ + +.+.+.+++. .+
T Consensus 656 ~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~~~~~~~iDiGGGf-~v~y~~~~~~~~~~~~~~~i~~~~~~~~ 734 (861)
T PRK08961 656 AKTLGITVVGLHAHLGSGIETGEHWRRMADELASFARRFPDVRTIDLGGGL-GIPESAGDEPFDLDALDAGLAEVKAQHP 734 (861)
T ss_pred HHhCCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHHHhccCCcEEEecCcc-CcCCCCCCCCCCHHHHHHHHHHHHhhcC
Confidence 88889999999999999999999998888777777665542 243 2211 1 4566666655 35
Q ss_pred CcEEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCCC-hhhhhhccccccccCCCCCCCCccCCCCceeeEE
Q 037610 262 SLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSL-AWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNST 340 (405)
Q Consensus 262 ~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (405)
++++++|||||++++|++++|+|+++|..++ ++|+++|++.+.+ .+.+|+.+++.. .+.... .....++.
T Consensus 735 ~~~li~EPGR~lva~ag~lvt~V~~vK~~~~-~~~~~~d~G~~~l~~p~~~~~~~~~~-~~~~~~-------~~~~~~~~ 805 (861)
T PRK08961 735 GYQLWIEPGRYLVAEAGVLLARVTQVKEKDG-VRRVGLETGMNSLIRPALYGAYHEIV-NLSRLD-------EPAAGTAD 805 (861)
T ss_pred CCEEEEccCceeeecceEEEEEEEEEEecCC-ceEEEECCcccccCChhhhcccccce-ecCCCC-------CCCceEEE
Confidence 7899999999999999999999999998654 6777777665544 577787666432 222111 22456889
Q ss_pred EeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCCceEE
Q 037610 341 VFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTY 394 (405)
Q Consensus 341 v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~~~ 394 (405)
|+||+|+++|++..++.+|++++||+|+|.++|||+++|+++||++|+|++++.
T Consensus 806 v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fn~~p~p~ev~~ 859 (861)
T PRK08961 806 VVGPICESSDVLGKRRRLPATAEGDVILIANAGAYGYSMSSTYNLREPAREVVL 859 (861)
T ss_pred EEcCCCCCCCEEEecccCCCCCCCCEEEEeCCCcchHHHhhhhhCCCCCcEEEE
Confidence 999999999999999999999999999999999999999999999999997653
No 19
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=100.00 E-value=9.2e-58 Score=453.09 Aligned_cols=329 Identities=16% Similarity=0.110 Sum_probs=254.8
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhC--CCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCC
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNL--PMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANP 126 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~--~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp 126 (405)
+| |+||||++.|++|+++|++.+ ++++++||+|||+++.|++++.++|+|+||+|.+|++.|+++ ++ ++++++||
T Consensus 2 ~t-P~yvyd~~~i~~~~~~l~~~~~~~~~~i~YAvKAN~~~~il~~l~~~g~G~D~aS~gEl~~al~a-~~-~~~i~~~~ 78 (380)
T TIGR01047 2 PT-PAFVLEEEKLRKNLEILEHVQQQSGAKVLLALKGFAFWGVFPILREYLDGCTASGLWEAKLAKEE-FG-KEIHVYSP 78 (380)
T ss_pred CC-CEEEecHHHHHHHHHHHHHHHhhcCCEEEEEEcccCChHHHHHHHHHCCcccccCHHHHHHHHHH-CC-CcEEEECC
Confidence 68 999999999999999999877 478899999999999999999999999999999999999998 76 56777799
Q ss_pred CCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCC--CCCCC---CCCCCCCCChhhHHHHH
Q 037610 127 CKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSG--AKYPL---DSKYGAGHHPQEIMPLL 197 (405)
Q Consensus 127 ~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~--~~~~~---~srfGi~~~~~e~~~~~ 197 (405)
.|+++||+.|+++|+ .+++||++||++|.+.+ +..+++|||||+.+.+ ....+ .||||+ +.+++.+.+
T Consensus 79 ~k~~~el~~a~~~g~-~i~idS~~el~~l~~~a~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFGi--~~~~~~~~~ 155 (380)
T TIGR01047 79 AYSEEDVPEIIPLAD-HIIFNSLAQWARYRHLVEGKNSAVKLGLRINPEYSEVGTDLYNPCGQFSRLGV--QADHFEESL 155 (380)
T ss_pred CCCHHHHHHHHHcCC-EEEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCcccccCCCCCCCCCC--CHHHHhHhH
Confidence 999999999999998 68999999999999865 3458999999986542 12222 499999 888876553
Q ss_pred HHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCC--C----chhHHHHHHHHHhCCCCCc
Q 037610 198 KAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAA--------RTSN--N----KMRKLFKLIFRELLPGSSL 263 (405)
Q Consensus 198 ~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~--------~~G~--~----~~~~li~~~l~~~~~~~~~ 263 (405)
.+++.|||+|+||+ .+.+.|.+.++.+.++++... +.|+ + +++. +...+.+.+...++
T Consensus 156 ------~~~i~GlH~HiGS~-~~~~~~~~~i~~~~~~~~~~~~~~~~iDiGGGfgv~y~~~~~~~-~~~~i~~~~~~~~~ 227 (380)
T TIGR01047 156 ------LDGINGLHFHTLCE-KDADALERTLEVIEERFGEYLPQMDWVNFGGGHHITKPGYDVEK-LIAVIKAFAERHGV 227 (380)
T ss_pred ------hhcCcEEEEecCCC-CCHHHHHHHHHHHHHHHHHhhCCCCEEEeCCCcCCCCCCCCHHH-HHHHHHHHHHHhCC
Confidence 25688999999999 899999888888777765432 1233 1 1222 33444444433368
Q ss_pred EEEECCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCCChhhhhhccccccccCCCCCCC--Ccc--CCCCceeeE
Q 037610 264 KVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSF--TTS--KGLTRTYNS 339 (405)
Q Consensus 264 ~l~~EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~--~~~~~~~~~ 339 (405)
+|++|||||++++|++++++|+++|.. ++.|+++|+++..+.+..+...+ .|..+...... .+. .......++
T Consensus 228 ~li~EPGR~lva~ag~lv~~V~~~K~~--~~~~~~vD~g~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (380)
T TIGR01047 228 QVILEPGEAIGWQTGFLVASVVDIVEN--EKKIAILDVSFEAHMPDTLEMPY-RPSVLGASDPATRENEEISLKEGQFSY 304 (380)
T ss_pred EEEEeCchHHHhcCeeEEEEEEEEEEC--CeeEEEEecChHhcChhhhccCC-CcccccCCCccccccccccccCCceeE
Confidence 999999999999999999999999875 37788888755433222222111 11212110000 000 001134578
Q ss_pred EEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCCceEE
Q 037610 340 TVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTY 394 (405)
Q Consensus 340 ~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~~~ 394 (405)
+|+||+|+++|++..+..+|++++||+|+|.++|||+++|+++||++++|+++++
T Consensus 305 ~v~G~~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~smss~fn~~~~p~~v~~ 359 (380)
T TIGR01047 305 VLGGCTCLAGDVMGEYAFDEPLKVGDKLVFLDMIHYTMVKNTTFNGVKLPSLGCL 359 (380)
T ss_pred EEEcCCCCcccEEeecccCCCCCCCCEEEEcCcCChhhhccCCCCCCCCCcEEEE
Confidence 9999999999999988888899999999999999999999999999999997665
No 20
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=100.00 E-value=5.8e-57 Score=453.60 Aligned_cols=330 Identities=21% Similarity=0.228 Sum_probs=265.2
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCC----CCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEE
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLP----MIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRII 122 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~----~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii 122 (405)
+++| |+||||+++|++|++++++.++ +++++||+|||+++.|++.+.+.|+||+|+|.+|++.++++|+++++|+
T Consensus 7 ~~~T-P~~v~d~~~l~~N~~~l~~~~~~~~~~~~~~yavKaN~~~~il~~l~~~G~g~dvaS~~E~~~~~~~G~~~~~I~ 85 (423)
T cd06842 7 AYGS-PLNVLFPQTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGIGVDVASLAELRQALAAGVRGDRIV 85 (423)
T ss_pred hhCC-CEEEEcHHHHHHHHHHHHHHHHHhCCCeEEEEEeccCCCHHHHHHHHHcCCCEEECCHHHHHHHHHCCCCCCeEE
Confidence 5789 9999999999999999999885 5789999999999999999999999999999999999999999998999
Q ss_pred EcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC-----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHH
Q 037610 123 YANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH-----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLL 197 (405)
Q Consensus 123 ~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~-----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~ 197 (405)
|+||.|++++++.|++.|+ .+++||++||++|.+.+ ++.+++|||+++.. ...+|||+ +.+++.+++
T Consensus 86 ~~g~~k~~~~i~~a~~~gi-~i~vDs~~el~~l~~~a~~~~~~~~~v~lRIn~~~~-----~~~sRfGi--~~~e~~~~~ 157 (423)
T cd06842 86 ATGPAKTDEFLWLAVRHGA-TIAVDSLDELDRLLALARGYTTGPARVLLRLSPFPA-----SLPSRFGM--PAAEVRTAL 157 (423)
T ss_pred EECCCCCHHHHHHHHhCCC-EEEECCHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC-----CCCCCCCC--CHHHHHHHH
Confidence 9999999999999999999 59999999999998754 45799999998653 22499999 889999999
Q ss_pred HHHHHc--CCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCchhHH-----------------------H--
Q 037610 198 KAAEAS--GLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKL-----------------------F-- 250 (405)
Q Consensus 198 ~~~~~~--~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~~~~~~l-----------------------i-- 250 (405)
+.+++. ++++.|||+|+||+ +.+.+.++++.+.++++.+++.|+ +++++ +
T Consensus 158 ~~i~~~~~~l~l~Glh~H~gs~--~~~~~~~~~~~~~~~~~~l~~~g~-~~~~idiGGG~~~~y~~~~~~~~~~~~~~~~ 234 (423)
T cd06842 158 ERLAQLRERVRLVGFHFHLDGY--SAAQRVAALQECLPLIDRARALGL-APRFIDIGGGFPVSYLADAAEWEAFLAALTE 234 (423)
T ss_pred HHHHhcCCCCeEEEEEEEcCCC--CHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEeCCCcCCCcCCcHHHHHHHHHhhhh
Confidence 888775 89999999999997 677788888888888877754332 11111 0
Q ss_pred -------------------------------------HHHH----------HHhCCCCCcEEEECCchhhhccceeEEEE
Q 037610 251 -------------------------------------KLIF----------RELLPGSSLKVISEPGRFFAASAFTLYAQ 283 (405)
Q Consensus 251 -------------------------------------~~~l----------~~~~~~~~~~l~~EPGr~lv~~a~~l~t~ 283 (405)
...+ .+.+...+++|++||||+++++||.|+|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~EpGR~lva~ag~lvt~ 314 (423)
T cd06842 235 ALYGYGRPLTWRNEGGTLRGPDDFYPYGQPLVAADWLRAILSAPLPQGRTIAERLRDNGITLALEPGRALLDQCGLTVAR 314 (423)
T ss_pred hhhccCCcccccccccccCCCcccccCCCCCCHHHHHHHHHhccccccccHHHHHHhcCCEEEEcCCHHHHhhcCeEEEE
Confidence 0111 11112236799999999999999999999
Q ss_pred EEEEEEeCCeeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeEEEeccCcCCCCeeec-CCCCC-CC
Q 037610 284 IIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFT-GHKLP-EL 361 (405)
Q Consensus 284 V~~~k~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~-~~~lp-~l 361 (405)
|+++|..+.+++|+++||+++.+.. |...+. ..++....... ........++|+||+|+++|+|.+ ++.+| ++
T Consensus 315 V~~vK~~~~~~~~~~~Dgg~~~~~~--~~~~~~-~~~~~~~~~~~--~~~~~~~~~~v~Gp~C~~~D~l~~~~~~lp~~~ 389 (423)
T cd06842 315 VAFVKQLGDGNHLIGLEGNSFSACE--FSSEFL-VDPLLIPAPEP--TTDGAPIEAYLAGASCLESDLITRRKIPFPRLP 389 (423)
T ss_pred EEEEeecCCCCeEEEEecCCCcCCc--ccccee-cCceeccCCCC--cCCCCCceEEEeCccccchhhhhhhhccCCCCC
Confidence 9999987445889999998876643 443332 12221111000 001134578899999999999995 66789 69
Q ss_pred CCCCEEEEcCCCccccccC-CCCCCCCCCCceE
Q 037610 362 EVNDWLVFSEMGAYTTACG-TNFNGYSTVAIPT 393 (405)
Q Consensus 362 ~~GD~l~~~~~GAY~~~~~-~~fn~~~~p~~~~ 393 (405)
++||+|+|.++|||+++++ ++||++|+|++++
T Consensus 390 ~~GD~l~~~~~GAY~~~~~~~~fn~~~~p~ev~ 422 (423)
T cd06842 390 KPGDLLVFPNTAGYQMDFLESRFHRHPLPRRVV 422 (423)
T ss_pred CCCCEEEEecchHHHHHhhhhhhcCCCCCcccc
Confidence 9999999999999999765 7999999999754
No 21
>PRK05354 arginine decarboxylase; Provisional
Probab=100.00 E-value=6.8e-43 Score=361.17 Aligned_cols=354 Identities=21% Similarity=0.285 Sum_probs=269.9
Q ss_pred cCCcHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCC----------CCceeeeeccCCcHHHHHHHHHcC--
Q 037610 30 TKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLP----------MIHPHYAVKCNPEPALLEALAALG-- 97 (405)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~----------~~~i~yavKaN~~~~vl~~l~~~G-- 97 (405)
.+.++.++++++..+ .++| |+||+|++.|++|+++++++|+ +++++||+|||+++.|++.+.+.|
T Consensus 46 ~~i~L~~l~~~~~~~--~~gt-PlyV~~~~~L~~ri~~L~~aF~~a~~~~~y~g~~~~~YAiKaN~~~~Vl~~l~~~G~~ 122 (634)
T PRK05354 46 ASIDLAELVKELRER--GLRL-PLLLRFPDILQDRVRSLNAAFKKAIEEYGYQGDYRGVYPIKVNQQRRVVEEIVASGKP 122 (634)
T ss_pred CCcCHHHHHHHhhcc--CCCC-CEEEEcHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEeccCChHHHHHHHHHcCCC
Confidence 347889999998654 7999 9999999999999999999886 458999999999999999999999
Q ss_pred --CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHc---CCc-EEEecCHHHHHHHHhHCC----CCeEEEE
Q 037610 98 --SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASV---GVN-LTTVDSVEELDKIRNWHP----KSDLLIR 167 (405)
Q Consensus 98 --~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~---gv~-~i~vds~~el~~i~~~~~----~~~v~lR 167 (405)
+|+||+|..|+.+|+++|++++++++.++.|+.++|+.|+.. |.. +++|||++||++|.+.++ ..+++||
T Consensus 123 ~~~GlEv~S~~EL~~AL~~g~~~~~lIi~NG~Kd~e~I~~Al~~~~lG~~v~ivIDs~~EL~~I~~~a~~~~~~p~IglR 202 (634)
T PRK05354 123 YNLGLEAGSKPELMAVLALAGDPGALIVCNGYKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGVKPRLGVR 202 (634)
T ss_pred CceeEEECCHHHHHHHHHcCCCCCcEEEcCCCCCHHHHHHHHHhHhcCCCEEEEECCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 899999999999999999998884444448999999998743 432 589999999999988643 5689999
Q ss_pred EecCCCC-CCCCCC---CCCCCCCCChhhHHHHHHHHHHcC-C-eEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhC
Q 037610 168 IKSPDDS-GAKYPL---DSKYGAGHHPQEIMPLLKAAEASG-L-SVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAART 241 (405)
Q Consensus 168 i~~~~~~-~~~~~~---~srfGi~~~~~e~~~~~~~~~~~~-l-~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~ 241 (405)
|++.... |....+ .||||+ +.+++.++++.+++.+ + ++.|||||+|||+.+.+.|.++++.+.+++..+++.
T Consensus 203 i~~~~~~~g~~~~tgG~~SKFGl--~~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~al~e~~~~~~eL~~~ 280 (634)
T PRK05354 203 ARLASQGSGKWQSSGGEKSKFGL--SATEVLEAVERLREAGLLDCLQLLHFHLGSQIANIRDIKTAVREAARFYVELRKL 280 (634)
T ss_pred EecCCCCCCCcccCCCCCCCCCC--CHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 9987543 222223 389999 9999999999988865 4 699999999999999999999999998888777653
Q ss_pred CCCchhH----------------------------H---HHHHHHHhCC---CCCcEEEECCchhhhccceeEEEEEEEE
Q 037610 242 SNNKMRK----------------------------L---FKLIFRELLP---GSSLKVISEPGRFFAASAFTLYAQIIGK 287 (405)
Q Consensus 242 G~~~~~~----------------------------l---i~~~l~~~~~---~~~~~l~~EPGr~lv~~a~~l~t~V~~~ 287 (405)
|+ ++++ + +...+.+.+. .+.+.|++||||++|+++++|+++|+++
T Consensus 281 G~-~l~~LDIGGGlgV~Y~g~~~~~~~s~nydl~eya~~Iv~~l~~~~~~~~v~~p~Ii~EpGRalVA~agvLvt~V~~v 359 (634)
T PRK05354 281 GA-PIQYLDVGGGLGVDYDGTRSQSDSSVNYSLQEYANDVVYTLKEICEEHGVPHPTIISESGRALTAHHAVLVFNVLGV 359 (634)
T ss_pred CC-CCCEEEeCCCcCcCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchhhhcceEEEEEEEEE
Confidence 32 1111 1 2334555443 3578999999999999999999999999
Q ss_pred EEeCCe--------------------------------------------------------------------------
Q 037610 288 RVRGEL-------------------------------------------------------------------------- 293 (405)
Q Consensus 288 k~~~~~-------------------------------------------------------------------------- 293 (405)
|.....
T Consensus 360 K~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~ 439 (634)
T PRK05354 360 ESQEYEEPPAPAEDAPPLLQNLWETYQEISERNLQEIYHDAQQDLEEALTLFALGYLSLQERAWAEQLYWAICRKIQKLL 439 (634)
T ss_pred EecCCCCCCCCcccccHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 974210
Q ss_pred ------------------eEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeEEEeccCcCCCCeeec-
Q 037610 294 ------------------REYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFT- 354 (405)
Q Consensus 294 ------------------~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~- 354 (405)
.+|++|=+.+.++...+=-++..+.-|+.... ..+..+..+++-||+|.+.+-.
T Consensus 440 ~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pi~rl~-------e~p~~~~~l~DiTCDSDg~i~~f 512 (634)
T PRK05354 440 DPKNRHPPELDELQERLADKYYVNFSLFQSLPDAWAIDQLFPIMPLHRLD-------EEPTRRAVLADITCDSDGKIDQF 512 (634)
T ss_pred cccccCcHHHHHHHHHhhhheEEeeehhccccchhhhCCccceeeccccC-------CCcceeeEEecccccCCCchhcc
Confidence 03333333333322211112222222333222 3467888999999999886543
Q ss_pred --------CCCCCCCCCCC--EEEEcCCCccccccCCCCCCCCCCCceEEEE
Q 037610 355 --------GHKLPELEVND--WLVFSEMGAYTTACGTNFNGYSTVAIPTYVV 396 (405)
Q Consensus 355 --------~~~lp~l~~GD--~l~~~~~GAY~~~~~~~fn~~~~p~~~~~~~ 396 (405)
.+.||+++.|. +|.|+.+|||+-.++..-|-|..|.++..+.
T Consensus 513 i~~~~~~~~l~lh~~~~~e~y~lg~FlvGAYQe~lg~~HNLfg~~~~v~v~~ 564 (634)
T PRK05354 513 IDGQGIKTTLPLHELDPGEPYYLGFFLVGAYQEILGDMHNLFGDTNAVHVRV 564 (634)
T ss_pred cCCcCCcCceeCCccCCCCccEEEEEecchhhHhhccccccCCCCCEEEEEE
Confidence 24566888887 7889999999999998888888888666554
No 22
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=100.00 E-value=4.7e-41 Score=347.41 Aligned_cols=353 Identities=20% Similarity=0.308 Sum_probs=265.2
Q ss_pred cCCcHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCC----------CCceeeeeccCCcHHHHHHHHHcC--
Q 037610 30 TKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLP----------MIHPHYAVKCNPEPALLEALAALG-- 97 (405)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~----------~~~i~yavKaN~~~~vl~~l~~~G-- 97 (405)
.+.++.++++++..+ .++| |+||+|++.|++|+++++++|+ +++++||+|||+++.|++.+.+.|
T Consensus 39 ~~i~l~~~v~~~~~~--g~~t-Pl~V~d~~iL~~~i~~l~~aF~~a~~~~~Y~g~~~~~YavKaN~~~~Vl~~l~~~G~~ 115 (624)
T TIGR01273 39 QSIDLLELVDQVRAR--GLQL-PLLVRFPDILQHRIRSLNDAFANAIEEYQYAGHYQGVYPIKVNQHRSVVEDIVAFGKG 115 (624)
T ss_pred CCcCHHHHHHHHHhc--CCCC-CEEEEcHHHHHHHHHHHHHHHHHHHHhhccCCCeeEEEEeccCCcHHHHHHHHHcCCC
Confidence 357899999998665 7899 9999999999999999999986 467999999999999999999999
Q ss_pred --CeEEEcCHHHHHHHHhCCCCC-CcEEEcCCCCCHHHHHHHHH---c--CCcEEEecCHHHHHHHHhHCC----CCeEE
Q 037610 98 --SNFDCGSRSEIEAVLLLDVSP-DRIIYANPCKPVSHIKYAAS---V--GVNLTTVDSVEELDKIRNWHP----KSDLL 165 (405)
Q Consensus 98 --~g~~vaS~~E~~~a~~~G~~~-~~Ii~~gp~k~~~~l~~a~~---~--gv~~i~vds~~el~~i~~~~~----~~~v~ 165 (405)
+|+||+|..|+.+|+++|+++ ..|+++| .|+.++|+.|+. . ++ ++++||++||++|.+.++ ..+++
T Consensus 116 ~~~GlEv~S~~EL~~Al~~g~~p~~~Ii~NG-~K~~e~I~~Al~~~~lG~~v-~IvIDs~~EL~~I~~~a~~~~~~~~Ig 193 (624)
T TIGR01273 116 LNYGLEAGSKPELLAAMAYATKPGAPIVCNG-YKDREYIELALIGRKLGHNV-FIVIEKLSELDLVIEEAKKLGVKPKLG 193 (624)
T ss_pred CceEEEECCHHHHHHHHHcCCCCCCEEEeCC-CCCHHHHHHHHHhhhcCCCe-EEEECCHHHHHHHHHHHHhcCCCceEE
Confidence 899999999999999999854 4688888 699999999974 3 55 589999999999998653 46899
Q ss_pred EEEecCCCCCCCC-CC---CCCCCCCCChhhHHHHHHHHHHcC-C-eEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Q 037610 166 IRIKSPDDSGAKY-PL---DSKYGAGHHPQEIMPLLKAAEASG-L-SVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAA 239 (405)
Q Consensus 166 lRi~~~~~~~~~~-~~---~srfGi~~~~~e~~~~~~~~~~~~-l-~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~ 239 (405)
||+++......++ .+ .+|||+ +.+++.++++.+++.+ + .+.|||||+|||+.+.+.|.++++.+.+++..++
T Consensus 194 lRvnl~~~~~g~~~~tgg~~SKFGl--~~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~~~~~i~~eL~ 271 (624)
T TIGR01273 194 LRARLASKGSGKWASSGGEKSKFGL--SATQILEVVRLLEQNGLLDCLKLLHFHIGSQISNIDDVKKGVREAARFYCELR 271 (624)
T ss_pred EEEecCCCCCCCcccCCCCCCCCCC--CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999865332222 22 389999 9999999999988865 3 4999999999999999999999999999888776
Q ss_pred hCCCCchhHH-------------------------------HHHHHHHhCC---CCCcEEEECCchhhhccceeEEEEEE
Q 037610 240 RTSNNKMRKL-------------------------------FKLIFRELLP---GSSLKVISEPGRFFAASAFTLYAQII 285 (405)
Q Consensus 240 ~~G~~~~~~l-------------------------------i~~~l~~~~~---~~~~~l~~EPGr~lv~~a~~l~t~V~ 285 (405)
+.|. +++++ +...+++.+. .+.+.|++||||++++++++|+|+|+
T Consensus 272 ~~G~-~l~~LDIGGGlgV~Y~g~~~~~~~s~~y~leeya~~Iv~~l~~~~~~~~~~~p~Ii~EpGR~lvA~agvLVt~V~ 350 (624)
T TIGR01273 272 KLGA-KITYVDVGGGLGVDYDGTSSSSDCSVNYGLEEYAADVVQALREICDEKGVPHPVIITESGRAITAHHAVLITNVL 350 (624)
T ss_pred HcCC-CCCEEEeCCCcCCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCCchhccceEEEEEEE
Confidence 5432 11111 3344555443 35789999999999999999999999
Q ss_pred EEEEeCCe------------------------------------------------------------------------
Q 037610 286 GKRVRGEL------------------------------------------------------------------------ 293 (405)
Q Consensus 286 ~~k~~~~~------------------------------------------------------------------------ 293 (405)
++|.....
T Consensus 351 ~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~G~l~l~~ra~~e~l~~~~~~~~~~ 430 (624)
T TIGR01273 351 GVERHEYDPDPKIKEDTPPLVRTLRELYGSIDRRSAIEILHDAQHLKEEAVEGFKLGYLDLEQRAWAEQLYLSICRKVHQ 430 (624)
T ss_pred EEeccCCCCCCCCcccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99973210
Q ss_pred --------------------eEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeEEEeccCcCCCCeee
Q 037610 294 --------------------REYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVF 353 (405)
Q Consensus 294 --------------------~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~ 353 (405)
.+|++|=+.+.++...+=-++..+.-|+.... ..+..+..+++-||+|.+.+-
T Consensus 431 ~~~~~~~~~~~~~~l~~~l~~~y~~NfS~fqslPD~Wai~Q~Fpi~Pl~rl~-------e~p~~~~~l~DiTCDSDg~i~ 503 (624)
T TIGR01273 431 LSAKNKDHRPILDELQERLADKYFVNFSVFQSLPDAWGIDQLFPIMPLSRLD-------EKPTRRAVLQDITCDSDGKID 503 (624)
T ss_pred HHhccccCchHHHHHHHhhhhheEEehhhhccccchhhhCCccceecCCCCC-------CCccceEEEeccCCCCCCchh
Confidence 02222222222221111001111122232221 346788899999999988433
Q ss_pred c-----C----CCCCCCCCCC--EEEEcCCCccccccCCCCCCCCCCCceEEEEe
Q 037610 354 T-----G----HKLPELEVND--WLVFSEMGAYTTACGTNFNGYSTVAIPTYVVR 397 (405)
Q Consensus 354 ~-----~----~~lp~l~~GD--~l~~~~~GAY~~~~~~~fn~~~~p~~~~~~~~ 397 (405)
. + +.|++++.|. +|.|+.+|||+-.++..-|-|..|..+.....
T Consensus 504 ~fi~~~~~~~~l~lh~~~~~e~y~lg~FlvGAYQe~lg~~HNLfg~~~~v~v~~~ 558 (624)
T TIGR01273 504 QFIGEQGITSTLPLHELDPDEGYFLGFFLVGAYQEILGDMHNLFGDTSAVRVVFD 558 (624)
T ss_pred ccCCCcCccCCccCCCcCCCCCcEEEEEeccHhHHHhccccccCCCCCEEEEEEC
Confidence 2 2 3455776665 57799999999999988888888886665543
No 23
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=100.00 E-value=1.2e-38 Score=299.96 Aligned_cols=218 Identities=33% Similarity=0.500 Sum_probs=179.5
Q ss_pred eHHHHHHHHHHH-HHhCCC-CceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHH
Q 037610 57 DLGVVVSLYNHM-ISNLPM-IHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIK 134 (405)
Q Consensus 57 d~~~l~~n~~~~-~~~~~~-~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~ 134 (405)
|+++++++++++ ++.+|. ++++||+|||+++.|++.+.++|+|+||+|.+|++.|+++|+++++|+|+||.|++++|+
T Consensus 1 d~~~~~~~~~~~~~~~~~~~~~i~yA~KaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~g~~~~~Ii~~gp~k~~~~l~ 80 (251)
T PF02784_consen 1 DLDRIIERIRAAWKAFLPYNVKIFYAVKANPNPAVLKILAEEGCGFDVASPGELELALKAGFPPDRIIFTGPGKSDEELE 80 (251)
T ss_dssp EHHHHHHHHHHHHHHHTTT-EEEEEEGGGS--HHHHHHHHHTTCEEEESSHHHHHHHHHTTTTGGGEEEECSS--HHHHH
T ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEEECcCCCHHHHHHHHHcCCceEEecccchHHHHhhhccccceeEecCcccHHHHH
Confidence 678777776664 455675 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCC--CCCCCC---CCCCCCCCChhh-HHHHHHHHHHcCCeEE
Q 037610 135 YAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDS--GAKYPL---DSKYGAGHHPQE-IMPLLKAAEASGLSVV 208 (405)
Q Consensus 135 ~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~--~~~~~~---~srfGi~~~~~e-~~~~~~~~~~~~l~l~ 208 (405)
.|++.|+..+++||++||++|.+..++.+++||||++.+. +..+.+ .||||+ +.++ +.++++.+++.++++.
T Consensus 81 ~a~~~~~~~i~vDs~~el~~l~~~~~~~~v~lRin~~~~~~~~~~~~~g~~~skFGi--~~~~~~~~~l~~~~~~~l~l~ 158 (251)
T PF02784_consen 81 EAIENGVATINVDSLEELERLAELAPEARVGLRINPGIGAGSHPKISTGGKDSKFGI--DIEEEAEEALERAKELGLRLV 158 (251)
T ss_dssp HHHHHTESEEEESSHHHHHHHHHHHCTHEEEEEBE-SESTTTSCHHCSSSHTSSSSB--EGGGHHHHHHHHHHHTTEEEE
T ss_pred HHHhCCceEEEeCCHHHHHHHhccCCCceeeEEEeeccccccccccCCCCCCCcCCc--ChHHHHHHHHHhhccceEEEE
Confidence 9999877779999999999999998888999999998543 223444 389999 8898 9999999988889999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHHHH-hCCCCchhHH----------------------HHHHHHHhCC--CCCc
Q 037610 209 GVSFHVGSEATNFAAFRGAIAAAKAVFDTAA-RTSNNKMRKL----------------------FKLIFRELLP--GSSL 263 (405)
Q Consensus 209 Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~-~~G~~~~~~l----------------------i~~~l~~~~~--~~~~ 263 (405)
|||+|+||+..+.+.|.++++.+.++++.+. ++|+.++++| +...+++++. .+++
T Consensus 159 GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~idiGGG~~~~y~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 238 (251)
T PF02784_consen 159 GLHFHVGSQILDAEAFRQAIERLLDLAEELKEELGFEDLEFIDIGGGFGVPYDDEYDLEEYAEVIREALKEYFEEGLPGP 238 (251)
T ss_dssp EEEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTTTT-SEEEEESSB-SSSSSSSCHHHHHHHHHHHHHHHHCHTCTTS
T ss_pred EeeeeeccCCcchHHHHHHHHHHHHHHhhhccccccccccEEEeeCCCCCCCcccccchhHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999988888776 4442102222 4556666665 4689
Q ss_pred EEEECCchhhhcc
Q 037610 264 KVISEPGRFFAAS 276 (405)
Q Consensus 264 ~l~~EPGr~lv~~ 276 (405)
+|++|||||++++
T Consensus 239 ~l~~EpGR~lva~ 251 (251)
T PF02784_consen 239 KLIIEPGRYLVAN 251 (251)
T ss_dssp EEEEEESHHHHGG
T ss_pred EEEEeeCHHHhCC
Confidence 9999999999874
No 24
>PLN02439 arginine decarboxylase
Probab=100.00 E-value=1.4e-36 Score=310.67 Aligned_cols=334 Identities=21% Similarity=0.265 Sum_probs=248.6
Q ss_pred EEEeHHHHHHHHHHHHHhCC----------CCceeeeeccCCcHHHHHHHHHcC----CeEEEcCHHHHHHHHhCC--CC
Q 037610 54 YLMDLGVVVSLYNHMISNLP----------MIHPHYAVKCNPEPALLEALAALG----SNFDCGSRSEIEAVLLLD--VS 117 (405)
Q Consensus 54 ~v~d~~~l~~n~~~~~~~~~----------~~~i~yavKaN~~~~vl~~l~~~G----~g~~vaS~~E~~~a~~~G--~~ 117 (405)
.+-..+.|++|+++++++|+ +++++||+|||+++.|++.+.+.| +|+||+|..|+.+|+++| ++
T Consensus 2 l~rf~d~l~~ri~~L~~aF~~ai~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEa~S~~EL~~al~~~~~~~ 81 (559)
T PLN02439 2 IVRFPDVLKNRLESLQSAFDYAIQSQGYNSHYQGVFPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGS 81 (559)
T ss_pred EeeCHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEeecCCCHHHHHHHHHcCCccCceeEEeCHHHHHHHHHcCCCCC
Confidence 34567899999999998874 468899999999999999999988 699999999999999997 55
Q ss_pred CCcEEEcCCCCCHHHHHHHHH---cCCc-EEEecCHHHHHHHHhHCC----CCeEEEEEecCCCC-CCCCCC---CCCCC
Q 037610 118 PDRIIYANPCKPVSHIKYAAS---VGVN-LTTVDSVEELDKIRNWHP----KSDLLIRIKSPDDS-GAKYPL---DSKYG 185 (405)
Q Consensus 118 ~~~Ii~~gp~k~~~~l~~a~~---~gv~-~i~vds~~el~~i~~~~~----~~~v~lRi~~~~~~-~~~~~~---~srfG 185 (405)
++++++.++.|+.++++.|+. .|+. +|++||++||++|.+.++ ...++|||+++... +....+ .+|||
T Consensus 82 ~~~ii~~NG~Kd~e~i~~Al~~~~lG~~~~IviDs~~EL~~I~~~a~~l~~~p~IglRi~~~~~~~~~~~~tgg~~sKFG 161 (559)
T PLN02439 82 PDAFLICNGYKDAEYVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGVRPVIGVRAKLRTKHSGHFGSTSGEKGKFG 161 (559)
T ss_pred CCeEEECCCCCCHHHHHHHHHhhhCCCCeEEEECCHHHHHHHHHHHHHcCCCceEEEEEecCCCCCCCccccCCCCCCCC
Confidence 667887777899999998864 4554 579999999999987643 46899999998653 211222 48999
Q ss_pred CCCChhhHHHHHHHHHHcC-Ce-EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCC-----------CC--------
Q 037610 186 AGHHPQEIMPLLKAAEASG-LS-VVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTS-----------NN-------- 244 (405)
Q Consensus 186 i~~~~~e~~~~~~~~~~~~-l~-l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G-----------~~-------- 244 (405)
+ +.+++.++++.+++.+ ++ +.|||||+||++.+.+.|.++++.+.+++..+++.| ++
T Consensus 162 l--~~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~e~~~l~~eL~~~G~~l~~lDIGGGlgV~Y~g~~~ 239 (559)
T PLN02439 162 L--TATEIVRVVRKLRKEGMLDCLQLLHFHIGSQIPSTSLLKDGVSEAAQIYCELVRLGAPMRVIDIGGGLGIDYDGSKS 239 (559)
T ss_pred C--CHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcEEEecCCccccCCCccc
Confidence 9 9999999999988764 54 999999999999999999999999988887776533 20
Q ss_pred ---------chhHH---HHHHHHHhCC---CCCcEEEECCchhhhccceeEEEEEEEEEEeC------------------
Q 037610 245 ---------KMRKL---FKLIFRELLP---GSSLKVISEPGRFFAASAFTLYAQIIGKRVRG------------------ 291 (405)
Q Consensus 245 ---------~~~~l---i~~~l~~~~~---~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~------------------ 291 (405)
+++.+ +...+.++++ .+.+.|++||||++++++++|+++|++++...
T Consensus 240 ~~~~~s~~ydl~eya~~Vv~~l~~~~~~~g~~~p~Ii~EpGR~lVA~agvLvt~V~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (559)
T PLN02439 240 GSSDMSVAYSLEEYANAVVAAVRDVCDRKGVKHPVICSESGRALVSHHSVLIFEAVSASKRGVPAADDDDQYLLLGLTEE 319 (559)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCcchhhcceEEEEEEEEeecCCCCCCCccccHHHHHHHHH
Confidence 01111 3344555543 35689999999999999999999999998300
Q ss_pred ---------------------------------------------------------------CeeEEEEecCCCCCChh
Q 037610 292 ---------------------------------------------------------------ELREYWINDGKFGSLAW 308 (405)
Q Consensus 292 ---------------------------------------------------------------~~~~~~i~dg~~~~~~~ 308 (405)
+..+|+++=+.+.++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~y~~NfS~fqslPD 399 (559)
T PLN02439 320 LRADYENLYAAADRGDYEECLLYADQLKQECVRLFKEGLLSLEQRAAVDGLCELVSKRVGASDPVATYHINLSVFTSIPD 399 (559)
T ss_pred HHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCChheEEEEeeehhccCcc
Confidence 01145555444444332
Q ss_pred hhhhccccccccCCCCCCCCccCCCCceeeEEEeccCcCCCCeeecC------CCCCCCCC--CC--EEEEcCCCccccc
Q 037610 309 VTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTG------HKLPELEV--ND--WLVFSEMGAYTTA 378 (405)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~------~~lp~l~~--GD--~l~~~~~GAY~~~ 378 (405)
.+=-++..+.-|+.... ..+..++.+++-||+|.+.+-.- +.+++++. |. +|-|+.+|||+-.
T Consensus 400 ~Wai~Q~Fpi~Pl~rl~-------e~p~~~~~l~diTCDsDg~i~~~~~~~~~lplh~~~~~~~e~y~lg~Fl~GAYQe~ 472 (559)
T PLN02439 400 FWAIGQLFPIVPLHRLD-------ERPTVRGILSDLTCDSDGKIDKFIGGEGSLPLHELEKNGGGPYYLGMFLGGAYQEA 472 (559)
T ss_pred ceeeCceeeeeeccccC-------CCcceeEEEeccccCCCCchhcccCCCCCCCCCCCCCCCCCCCEEEEEeccHhHHH
Confidence 21112222223343322 34678899999999999885542 23336666 43 4669999999999
Q ss_pred cCCCCCCCCCCCceEEEE
Q 037610 379 CGTNFNGYSTVAIPTYVV 396 (405)
Q Consensus 379 ~~~~fn~~~~p~~~~~~~ 396 (405)
++..-|-|..|.++..+.
T Consensus 473 lg~~HnLfg~~~~v~v~~ 490 (559)
T PLN02439 473 LGSLHNLFGGPSVVRVSQ 490 (559)
T ss_pred hccccccCCCCCEEEEEE
Confidence 998888889998766553
No 25
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=100.00 E-value=3.7e-34 Score=283.97 Aligned_cols=297 Identities=16% Similarity=0.165 Sum_probs=233.5
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC----cHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcC
Q 037610 52 PFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP----EPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
...++|+++|++|++.+++.++ +++++|++|||+ .+.|++.+.++|+ +|+|+|++|+..++++|++++.+++++
T Consensus 2 ~~l~Id~~~i~~N~~~l~~~~~~~~~l~~vvKan~yGhg~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~g~~~~i~~~~~ 81 (367)
T cd00430 2 TWAEIDLDALRHNLRVIRRLLGPGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITAPILVLGG 81 (367)
T ss_pred EEEEEEHHHHHHHHHHHHHhCCCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCEEEEeC
Confidence 4678999999999999999997 789999999998 6999999999998 999999999999999999876555554
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHH
Q 037610 126 PCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAE 201 (405)
Q Consensus 126 p~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~ 201 (405)
+ ..++++.++++++ .+++||+++++.|.+.+ +..++.|||++++ +|||+ +++++.++++.++
T Consensus 82 ~--~~~~~~~~~~~~i-~~~vds~~~l~~l~~~a~~~~~~~~v~l~vdtG~---------~R~G~--~~~e~~~~~~~i~ 147 (367)
T cd00430 82 T--PPEEAEEAIEYDL-TPTVSSLEQAEALSAAAARLGKTLKVHLKIDTGM---------GRLGF--RPEEAEELLEALK 147 (367)
T ss_pred C--CHHHHHHHHHcCC-EEEECCHHHHHHHHHHHHHcCCceEEEEEEcCCC---------CCCCC--CHHHHHHHHHHHH
Confidence 4 3899999999998 58999999999998764 3567888887643 89999 8899999999887
Q ss_pred H-cCCeEEEEEEecCCCCCC-HHHHHHHHHHHHHHHHHHHhCCCCchhHH--HHHH-H----HHhCC--CCCcEEE-ECC
Q 037610 202 A-SGLSVVGVSFHVGSEATN-FAAFRGAIAAAKAVFDTAARTSNNKMRKL--FKLI-F----RELLP--GSSLKVI-SEP 269 (405)
Q Consensus 202 ~-~~l~l~Gih~H~gs~~~~-~~~~~~~i~~~~~~~~~~~~~G~~~~~~l--i~~~-l----~~~~~--~~~~~l~-~EP 269 (405)
+ .++++.|||+|++++..+ .+.+.++++++.++.+.+++.|+ +++.+ -++. + ...++ ++|..++ ..|
T Consensus 148 ~~~~l~~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g~-~~~~v~~g~s~~~~~~~~~~~d~vR~G~~lyG~~~ 226 (367)
T cd00430 148 ALPGLELEGVFTHFATADEPDKAYTRRQLERFLEALAELEEAGI-PPPLKHLANSAAILRFPEAHFDMVRPGIALYGLYP 226 (367)
T ss_pred hCCCceEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHhcCC-CCCcEEccCCHHHhCCccccCCeEeeCeEEECcCC
Confidence 7 589999999999998654 46777899999998888876664 33332 1221 1 11233 5666664 122
Q ss_pred c-----hhhhccceeEEEEEEEEEEeC------CeeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCceee
Q 037610 270 G-----RFFAASAFTLYAQIIGKRVRG------ELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYN 338 (405)
Q Consensus 270 G-----r~lv~~a~~l~t~V~~~k~~~------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (405)
. .....++++++|+|+++|... -+.+|....++..+..+++|.+++| +.+.+... + ...+++
T Consensus 227 ~~~~~~~~~l~~a~~l~a~Vi~vk~~~~G~~vgyg~~~~~~~~~~~a~~~~Gy~dg~~--~~~~~~~~-v----~i~~~~ 299 (367)
T cd00430 227 SPEVKSPLGLKPVMSLKARVVQVKTVPAGEGVSYGRTYTAPRPTRIATLPVGYADGYP--RALSNKGE-V----LIRGKR 299 (367)
T ss_pred CcccccccCCceeeEEEEEEEEEEEcCCCCcCCCCCeEEcCCCcEEEEEeeccccCcC--cccCCCcE-E----EECCEE
Confidence 1 235799999999999999842 1467776666677778889987763 44443332 2 346789
Q ss_pred EEEeccCcCCCCeeecCC-CCCCCCCCCEEEEcCC
Q 037610 339 STVFGPTCDAFDEVFTGH-KLPELEVNDWLVFSEM 372 (405)
Q Consensus 339 ~~v~G~~C~~~D~l~~~~-~lp~l~~GD~l~~~~~ 372 (405)
++|+|++|| |+++.|+ .+|++++||.|+|.+.
T Consensus 300 ~~ivG~v~m--D~~~vdv~~~~~~~~GD~v~l~g~ 332 (367)
T cd00430 300 APIVGRVCM--DQTMVDVTDIPDVKVGDEVVLFGR 332 (367)
T ss_pred cceeceeec--cEEEEECCCCCCCCCCCEEEEEcC
Confidence 999999998 9999999 5789999999998876
No 26
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=100.00 E-value=3.1e-33 Score=277.22 Aligned_cols=296 Identities=13% Similarity=0.136 Sum_probs=232.5
Q ss_pred EEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC----cHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcCC
Q 037610 53 FYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP----EPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYANP 126 (405)
Q Consensus 53 ~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp 126 (405)
+.++|+++|++|++.+++.++ +.+++|++|||+ ++++++.+.+.|+ +|+|+|++|+..++++|++++.+++ ++
T Consensus 4 ~~~Idl~~l~~N~~~i~~~~~~~~~i~~vvKAnaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~lr~~G~~~~ilvl-~~ 82 (367)
T TIGR00492 4 TVEIDLAALKHNLSAIRNHIGPKSKIMAVVKANAYGHGLIEVAKTLLQAGADYFGVANLEEAITLRKAGITAPILLL-GG 82 (367)
T ss_pred EEEEEHHHHHHHHHHHHHhcCCCCEEEEEEEcCCccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCEEEE-eC
Confidence 467999999999999999887 578999999998 6999999999998 9999999999999999998765555 45
Q ss_pred CCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH
Q 037610 127 CKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA 202 (405)
Q Consensus 127 ~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~ 202 (405)
.. +++++.++++++ .+++||+++++.+.+.+ +..+++|||++++ +|||+ +++++.++++.++.
T Consensus 83 ~~-~~~~~~~~~~~l-~~~v~s~~~l~~l~~~a~~~~~~~~V~l~VdtGm---------~R~Gi--~~~e~~~~~~~i~~ 149 (367)
T TIGR00492 83 FF-AEDLKILAAWDL-TTTVHSVEQLQALEEALLKEPKRLKVHLKIDTGM---------NRLGV--KPDEAALFVQKLRQ 149 (367)
T ss_pred CC-HHHHHHHHHcCC-EEEECCHHHHHHHHHHHHHcCCceEEEEEeeCCC---------CCCCC--ChHHHHHHHHHHHh
Confidence 43 889999999999 58999999999998754 3468899998754 89999 88888888887665
Q ss_pred -cCCe-EEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHhCCCCchhHH--HHH--HH---HHhCC--CCCcEEE-ECC
Q 037610 203 -SGLS-VVGVSFHVGSEA-TNFAAFRGAIAAAKAVFDTAARTSNNKMRKL--FKL--IF---RELLP--GSSLKVI-SEP 269 (405)
Q Consensus 203 -~~l~-l~Gih~H~gs~~-~~~~~~~~~i~~~~~~~~~~~~~G~~~~~~l--i~~--~l---~~~~~--~~~~~l~-~EP 269 (405)
++++ +.|||+|+++.. .+.+.+.++++++.++++.++..|+ +++.+ -++ .+ +..++ ++|..++ ..|
T Consensus 150 ~~~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~-~~~~~~~~nS~~~~~~~~~~~d~vR~G~~lyG~~~ 228 (367)
T TIGR00492 150 LKKFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQNI-EPPFRHIANSAAILNWPESHFDMVRPGIILYGLYP 228 (367)
T ss_pred CCCCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCC-CCCcEEccCCHHHhCCccccCCeEccCeEEECCCc
Confidence 5899 999999999874 2334677889999998888876664 33332 222 11 12234 5676554 233
Q ss_pred ch-------hhhccceeEEEEEEEEEEeCC------eeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCce
Q 037610 270 GR-------FFAASAFTLYAQIIGKRVRGE------LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRT 336 (405)
Q Consensus 270 Gr-------~lv~~a~~l~t~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (405)
.. .-.+|++++.|+|+.+|.... |..|.....+..+..+++|.++. ++.+++... + ..++
T Consensus 229 ~~~~~~~~~~~l~pv~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~~GYaDG~--~r~~s~~~~-v----~i~g 301 (367)
T TIGR00492 229 SADMSDGAPFGLKPVLSLTSKIIQVRTVKKGEPVSYGGTFTAEEDTRIGVVAIGYADGY--PRALSNGTP-V----LVNG 301 (367)
T ss_pred CcccccccCCCCeeeEEEEEEEEEEEEcCCcCCcCCCCcEEcCCCcEEEEEeeecccCc--CcccCCCcE-E----EECC
Confidence 21 247999999999999998522 35677666666777788997765 466665443 2 4578
Q ss_pred eeEEEeccCcCCCCeeecCCC-CCCCCCCCEEEEcCC
Q 037610 337 YNSTVFGPTCDAFDEVFTGHK-LPELEVNDWLVFSEM 372 (405)
Q Consensus 337 ~~~~v~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 372 (405)
++++|+|++|| |+++.|++ .|++++||.++|.+.
T Consensus 302 ~~~~i~G~i~M--D~~~vdv~~~~~~~~Gd~v~l~g~ 336 (367)
T TIGR00492 302 KRVPIVGRVCM--DMIMVDLGPDLQDKTGDEVILWGE 336 (367)
T ss_pred EEeeeeeEEec--ceEEEECCCCCCCCCCCEEEEECC
Confidence 99999999999 99999995 678999999998874
No 27
>PRK00053 alr alanine racemase; Reviewed
Probab=100.00 E-value=4.5e-32 Score=268.46 Aligned_cols=298 Identities=14% Similarity=0.159 Sum_probs=236.0
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC----cHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcC
Q 037610 52 PFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP----EPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
++.++|+++|++|++.+++.++ +++++|++|||+ ++.+++.+.+.|+ +|+|+|++|+..++++|++. +|++.+
T Consensus 4 ~~l~Idl~~l~~N~~~i~~~~~~~~~i~~vvKanaYghg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~~G~~~-~il~l~ 82 (363)
T PRK00053 4 ATAEIDLDALRHNLRQIRKHAPPKSKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAGITA-PILILG 82 (363)
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCC-CEEEEe
Confidence 6788999999999999999987 588999999997 6899999999998 99999999999999999965 577777
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhH--CCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH-
Q 037610 126 PCKPVSHIKYAASVGVNLTTVDSVEELDKIRNW--HPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA- 202 (405)
Q Consensus 126 p~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~--~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~- 202 (405)
+..+.++++.++++++ .+++||+++++.|.+. .+..+++|||++++ +|||+ .++++.++++.++.
T Consensus 83 ~~~~~~e~~~~~~~~i-~~~v~s~~~l~~l~~~~~~~~~~V~l~vdtG~---------~R~Gi--~~~e~~~~~~~i~~~ 150 (363)
T PRK00053 83 GFFPAEDLPLIIAYNL-TTAVHSLEQLEALEKAELGKPLKVHLKIDTGM---------HRLGV--RPEEAEAALERLLAC 150 (363)
T ss_pred CCCCHHHHHHHHHcCC-EEEECCHHHHHHHHHhccCCCeEEEEEecCCC---------CcCCC--CHHHHHHHHHHHHhC
Confidence 7667889999999998 5899999999999874 23467899988654 89999 88889999988776
Q ss_pred cCCeEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH--H---HHhCC--CCCcEEE-ECCch--
Q 037610 203 SGLSVVGVSFHVGSEA-TNFAAFRGAIAAAKAVFDTAARTSNNKMRKLFKLI--F---RELLP--GSSLKVI-SEPGR-- 271 (405)
Q Consensus 203 ~~l~l~Gih~H~gs~~-~~~~~~~~~i~~~~~~~~~~~~~G~~~~~~li~~~--l---~~~~~--~~~~~l~-~EPGr-- 271 (405)
+++++.|||+|+++.. .+.+.+.+|+++|.++.+.++..|+ +..++.|+. + +..++ ++|.-++ ..|..
T Consensus 151 ~~l~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~-~~~h~~nS~~~~~~~~~~~d~vRpG~~lyG~~p~~~~ 229 (363)
T PRK00053 151 PNVRLEGIFSHFATADEPDNSYTEQQLNRFEAALAGLPGKGK-PLRHLANSAAILRWPDLHFDWVRPGIALYGLSPSGEP 229 (363)
T ss_pred CCCceEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhcCC-ceEeccCCHHHhCCCcccCceEccCeeeeCCCCCccc
Confidence 5899999999999874 3445667889999998888876664 333333331 2 11233 5676665 34432
Q ss_pred ----hhhccceeEEEEEEEEEEeCC------eeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeEEE
Q 037610 272 ----FFAASAFTLYAQIIGKRVRGE------LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTV 341 (405)
Q Consensus 272 ----~lv~~a~~l~t~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v 341 (405)
.-..|++++.|+|+.+|.... |..|.....+..+..+++|.++. ++.+++... + ..++++++|
T Consensus 230 ~~~~~~l~pa~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGy~DG~--~r~~s~~~~-v----~i~g~~~~i 302 (363)
T PRK00053 230 LGLDFGLKPAMTLKSSLIAVRELKAGEGVGYGGTFTAERDTRIAVVPIGYADGY--PRNLPSGTP-V----LVNGRRVPI 302 (363)
T ss_pred cccccCCeeeEEEEEEEEEEEEcCCcCccCcCCeEEcCCCcEEEEEEecccccc--ccccCCCCE-E----EECCEEcee
Confidence 247999999999999998522 35676666666677788997765 355655443 2 457889999
Q ss_pred eccCcCCCCeeecCCC-CCCCCCCCEEEEcCC
Q 037610 342 FGPTCDAFDEVFTGHK-LPELEVNDWLVFSEM 372 (405)
Q Consensus 342 ~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 372 (405)
+|++|| |+++.|++ .|++++||.|.|.+.
T Consensus 303 ~G~i~M--D~~~vdv~~~~~~~~Gd~v~l~g~ 332 (363)
T PRK00053 303 VGRVSM--DQLTVDLGPDPQDKVGDEVTLWGE 332 (363)
T ss_pred eceeec--ceEEEeCCCCCCCCCCCEEEEECC
Confidence 999999 99999985 578999999988775
No 28
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=7.1e-32 Score=265.19 Aligned_cols=292 Identities=15% Similarity=0.112 Sum_probs=229.1
Q ss_pred EEEEeHHHHHHHHHHHHHhCCCCceeeeeccCC----cHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCC
Q 037610 53 FYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNP----EPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCK 128 (405)
Q Consensus 53 ~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~----~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k 128 (405)
..++|+++|++|++.+++.+++.+++|++|||+ ++++++.+.+ ..+|+|+|++|+..++++|++++.+++.+|..
T Consensus 3 ~~~Idl~~l~~N~~~l~~~~~~~~l~~vvKanaYGhG~~~ia~~l~~-~~~f~Vas~~Ea~~lr~~G~~~~ilvl~~~~~ 81 (354)
T cd06827 3 RATIDLAALRHNLRLVRELAPNSKILAVVKANAYGHGLVRVAKALAD-ADGFAVACIEEALALREAGITKPILLLEGFFS 81 (354)
T ss_pred EEEEEHHHHHHHHHHHHhhCCCCeEEEEEeeccccCCHHHHHHHHHc-CCEEEEccHHHHHHHHhCCCCCCEEEEECCCC
Confidence 567999999999999999998889999999997 7999999988 55999999999999999999988777777754
Q ss_pred CHHHHHHHHHcCCcEEEecCHHHHHHHHhHC--CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH-cCC
Q 037610 129 PVSHIKYAASVGVNLTTVDSVEELDKIRNWH--PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA-SGL 205 (405)
Q Consensus 129 ~~~~l~~a~~~gv~~i~vds~~el~~i~~~~--~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~-~~l 205 (405)
+++++.++++++ .++++|+++++.+.+.. +..+++|+|++++ +|||+ .++++.++++.++. .++
T Consensus 82 -~~~~~~~~~~~l-~~~v~s~~~l~~l~~~~~~~~~~v~l~vDtGm---------~R~Gi--~~~e~~~~~~~i~~~~~l 148 (354)
T cd06827 82 -ADELPLAAEYNL-WTVVHSEEQLEWLEQAALSKPLNVWLKLDSGM---------HRLGF--SPEEYAAAYQRLKASPNV 148 (354)
T ss_pred -HHHHHHHHHcCC-EEEECCHHHHHHHHHhcCCCCeEEEEEeeCCc---------CCCCC--CHHHHHHHHHHHHhCCCc
Confidence 588999999999 48999999999998753 4567888888765 89999 88888888888766 689
Q ss_pred eEEEEEEecCCCCC-CHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH--H---HHhCC--CCCcEEE-ECCc------
Q 037610 206 SVVGVSFHVGSEAT-NFAAFRGAIAAAKAVFDTAARTSNNKMRKLFKLI--F---RELLP--GSSLKVI-SEPG------ 270 (405)
Q Consensus 206 ~l~Gih~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~G~~~~~~li~~~--l---~~~~~--~~~~~l~-~EPG------ 270 (405)
++.|+|+|+++... +......|+++|.++.+.++. ..++.|++ + +.+++ ++|+.++ .+|.
T Consensus 149 ~l~Gi~tH~a~ad~~~~~~~~~Q~~~F~~~~~~~~~-----~~h~~nS~~~~~~~~~~~d~vR~G~~lyG~~p~~~~~~~ 223 (354)
T cd06827 149 ASIVLMTHFACADEPDSPGTAKQLAIFEQATAGLPG-----PRSLANSAAILAWPEAHGDWVRPGIMLYGASPFADKSGA 223 (354)
T ss_pred eEEEEEeeccCCCCCCcHHHHHHHHHHHHHHhccCC-----CeeecCCHHHHCCccccCceEccCceeeCCCCCcccccc
Confidence 99999999998753 323345788888887764321 11233332 1 12344 6776665 4452
Q ss_pred hhhhccceeEEEEEEEEEEeC--C----eeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeEEEecc
Q 037610 271 RFFAASAFTLYAQIIGKRVRG--E----LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGP 344 (405)
Q Consensus 271 r~lv~~a~~l~t~V~~~k~~~--~----~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~ 344 (405)
..-.+|+++|.++|+.+|... + +.+|.....+..+..+++|.++. ++.+++... + ..++++++|+|+
T Consensus 224 ~~~lkpv~~l~a~v~~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~--~r~ls~~~~-v----~i~g~~~pivGr 296 (354)
T cd06827 224 DLGLKPVMTLSSEIIAVRELKAGESVGYGATWTAPRPMRIGVVAIGYGDGY--PRHAPSGTP-V----LVNGQRTPLVGR 296 (354)
T ss_pred CcCCeeeEEEEEEEEEEEEcCCcCCcCCCCeEEcCCCcEEEEEeeccccCc--ccccCCCCE-E----EECCEEeeeeeE
Confidence 134799999999999999842 2 45676666667777888997775 466665443 3 457899999999
Q ss_pred CcCCCCeeecCCC-CCCCCCCCEEEEcCC
Q 037610 345 TCDAFDEVFTGHK-LPELEVNDWLVFSEM 372 (405)
Q Consensus 345 ~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 372 (405)
+|| |+++.|++ .|++++||.|+|.+.
T Consensus 297 i~M--D~~~vdvt~~~~~~~Gd~v~l~g~ 323 (354)
T cd06827 297 VSM--DMLTVDLTDLPEAKVGDPVELWGK 323 (354)
T ss_pred Eec--cEEEEECCCCCCCCCCCEEEEECC
Confidence 999 99999984 578999999998875
No 29
>PRK13340 alanine racemase; Reviewed
Probab=100.00 E-value=1.1e-31 Score=268.92 Aligned_cols=295 Identities=13% Similarity=0.082 Sum_probs=227.2
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCC----cHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcC
Q 037610 52 PFYLMDLGVVVSLYNHMISNLPM-IHPHYAVKCNP----EPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKaN~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
+...+|+++|++|++.+++.++. .+++|++|||+ ..+|++.+.+.|+ +|+|+|.+|+..++++|++++.+++++
T Consensus 41 ~~l~Idl~ai~~N~~~i~~~~~~~~~i~~vvKAnaYG~G~~~va~~l~~~G~~~~~Vas~~Ea~~lr~~G~~~~ilvl~~ 120 (406)
T PRK13340 41 AWLEISPGAFRHNIKTLRSLLANKSKVCAVMKADAYGHGIELLMPSIIKANVPCIGIASNEEARRVRELGFTGQLLRVRS 120 (406)
T ss_pred eEEEEcHHHHHHHHHHHHHhCCCCCEEEEEEccccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhCCCCCCEEEECC
Confidence 45669999999999999999874 78999999998 5789999999998 999999999999999999988777776
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEec-CCCCCCCCCCCCCCCCCCChhhHHHHHH--
Q 037610 126 PCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKS-PDDSGAKYPLDSKYGAGHHPQEIMPLLK-- 198 (405)
Q Consensus 126 p~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~-~~~~~~~~~~~srfGi~~~~~e~~~~~~-- 198 (405)
+ ++++++.++++++. ++|||+++++.|.+.+ +..+++|||++ ++ +|||+ .+++..++..
T Consensus 121 ~--~~~el~~~~~~~l~-~~v~s~~~l~~l~~~a~~~~~~~~V~LkVDt~Gm---------~R~G~--~~~e~~~~~~~~ 186 (406)
T PRK13340 121 A--SPAEIEQALRYDLE-ELIGDDEQAKLLAAIAKKNGKPIDIHLALNSGGM---------SRNGL--DMSTARGKWEAL 186 (406)
T ss_pred C--CHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCceEEEEEECCCCC---------CCcCC--ChhhhhHHHHHH
Confidence 6 78999999999994 8999999999997653 34688999987 43 89999 7665433332
Q ss_pred HHHH-cCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH-HhCCCCchh----HHHHH--HH---HHhCC--CCCcEE
Q 037610 199 AAEA-SGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTA-ARTSNNKMR----KLFKL--IF---RELLP--GSSLKV 265 (405)
Q Consensus 199 ~~~~-~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~-~~~G~~~~~----~li~~--~l---~~~~~--~~~~~l 265 (405)
.+.+ .++++.|+|+|+++... ....+|++++.++++.+ ++.|+ ..+ +..|+ .+ +..++ ++|..+
T Consensus 187 ~l~~~~~l~l~Gi~tH~a~ad~--~~~~~q~~~f~~~~~~l~~~~g~-~~~~~~~h~anSa~~~~~~~~~~d~vR~G~~l 263 (406)
T PRK13340 187 RIATLPSLGIVGIMTHFPNEDE--DEVRWKLAQFKEQTAWLIGEAGL-KREKITLHVANSYATLNVPEAHLDMVRPGGIL 263 (406)
T ss_pred HHHhCCCccEEEEEEECCCCCc--HHHHHHHHHHHHHHHHHHHhcCC-CCCcCeEEecCCHHHHcCchhcCCeEeeCeee
Confidence 3333 58999999999998543 34557888888877765 33453 222 11222 11 22344 677777
Q ss_pred EE--CCchhhhccceeEEEEEEEEEEeCC------eeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCcee
Q 037610 266 IS--EPGRFFAASAFTLYAQIIGKRVRGE------LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTY 337 (405)
Q Consensus 266 ~~--EPGr~lv~~a~~l~t~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (405)
+- .|.....+++++|.++|+.+|+... +.+|.....+..+..+++|.++. ++.+++... + ..+++
T Consensus 264 yG~~~p~~~~l~pv~~l~a~Vi~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~--~r~ls~~~~-v----~i~g~ 336 (406)
T PRK13340 264 YGDRHPANTEYKRIMTFKSRIASVNTLPKGSTVGYDRTFTLKRDSRLANLPVGYSDGY--PRHASNKAP-V----LINGQ 336 (406)
T ss_pred eCCCCCCCCCCcccEEEEEEEEEEEEcCCcCccCCCCeEEcCCCcEEEEEeeecccCc--CccCCCCcE-E----EECCE
Confidence 63 4544457999999999999998632 35676666666777888997775 466766443 3 56889
Q ss_pred eEEEeccCcCCCCeeecCCC-CCCCCCCCEEEEcCC
Q 037610 338 NSTVFGPTCDAFDEVFTGHK-LPELEVNDWLVFSEM 372 (405)
Q Consensus 338 ~~~v~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 372 (405)
+++|+|++|| |+++.|++ .|++++||.|+|.+.
T Consensus 337 ~~pivGrv~M--D~~~vdvt~~~~~~~Gd~v~l~g~ 370 (406)
T PRK13340 337 RAPVVGRVSM--NTLMVDVTDIPNVKPGDEVVLFGK 370 (406)
T ss_pred Eeeeeeeeec--ceEEEECCCCCCCCCCCEEEEECC
Confidence 9999999999 99999985 578999999987776
No 30
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=2e-31 Score=263.66 Aligned_cols=296 Identities=12% Similarity=0.081 Sum_probs=226.1
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC----cHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcC
Q 037610 52 PFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP----EPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
.+..+|+++|++|++.+++.++ +.++++++|||+ ..+|++.+.+.|+ +|+|+|++|+..++++|++++.+++ +
T Consensus 2 ~~l~Idl~al~~N~~~i~~~~~~~~~i~~vvKAnAYGhG~~~va~~l~~~g~~~f~Vas~~Ea~~lr~~Gi~~~ilvl-~ 80 (365)
T cd06826 2 AWLEISTGAFENNIKLLKKLLGGNTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAGFTGKILRV-R 80 (365)
T ss_pred EEEEEEHHHHHHHHHHHHHhCCCCCEEEEEEEeccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhcCCCCCEEEE-e
Confidence 3577999999999999999987 678999999997 5679999999998 9999999999999999999876666 4
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEec-CCCCCCCCCCCCCCCCCCChhh--HHHHHH
Q 037610 126 PCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKS-PDDSGAKYPLDSKYGAGHHPQE--IMPLLK 198 (405)
Q Consensus 126 p~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~-~~~~~~~~~~~srfGi~~~~~e--~~~~~~ 198 (405)
+ +++++++.++++++. ++++|+++++.+.+.+ +..+++|||++ ++ +|||+ .+++ +.+++.
T Consensus 81 ~-~~~~e~~~~i~~~i~-~~v~s~~~l~~l~~~a~~~~~~~~v~LkvDt~Gm---------~R~Gi--~~~~~~~~~~~~ 147 (365)
T cd06826 81 T-ATPSEIEDALAYNIE-ELIGSLDQAEQIDSLAKRHGKTLPVHLALNSGGM---------SRNGL--ELSTAQGKEDAV 147 (365)
T ss_pred C-CCHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCceEEEEEECCCCC---------CCCCC--CcchhhHHHHHH
Confidence 3 578999999999995 8999999999987643 45678888887 55 89999 6643 455555
Q ss_pred HHHH-cCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH-HhCCCC-c--hhHHHHHH-H----HHhCC--CCCcEEE
Q 037610 199 AAEA-SGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTA-ARTSNN-K--MRKLFKLI-F----RELLP--GSSLKVI 266 (405)
Q Consensus 199 ~~~~-~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~-~~~G~~-~--~~~li~~~-l----~~~~~--~~~~~l~ 266 (405)
.+.. .++++.||++|++++... ...+|+++|.++++.+ ++.|+. + ..++.|++ + ..+++ ++|.-++
T Consensus 148 ~~~~~~~l~l~Gi~tH~a~ad~~--~~~~q~~~f~~~~~~~~~~~g~~~~~~~~h~~nSa~~l~~~~~~~d~vR~G~~ly 225 (365)
T cd06826 148 AIATLPNLKIVGIMTHFPVEDED--DVRAKLARFNEDTAWLISNAKLKREKITLHAANSFATLNVPEAHLDMVRPGGILY 225 (365)
T ss_pred HHHHCCCCcEEEEEEeCCCCCch--HHHHHHHHHHHHHHHHHHhcCCCCCcCeEEeeCCHHHhcCccccCCcCccCeeee
Confidence 5544 689999999999997532 3457888888877655 444431 1 12333432 1 12344 6777665
Q ss_pred -ECCchhhhccceeEEEEEEEEEEe--CC----eeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeE
Q 037610 267 -SEPGRFFAASAFTLYAQIIGKRVR--GE----LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNS 339 (405)
Q Consensus 267 -~EPGr~lv~~a~~l~t~V~~~k~~--~~----~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (405)
..|...-.+|+++|.|+|+.+|.. |+ +.+|.....+..+..+++|.++. ++.+++... + ..+++++
T Consensus 226 G~~p~~~~l~pv~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~--~r~ls~~~~-v----~i~g~~~ 298 (365)
T cd06826 226 GDTPPSPEYKRIMSFKSRVASLNTYPKGSTVGYDRTFTLTRDSLLANIPVGYSDGY--RRSFSNKAH-V----LINGQRV 298 (365)
T ss_pred CCCCCccCceeeEEEEEEEEEEEEcCCcCcccCCCeEEcCCCcEEEEEeeecccCc--CccCCCCcE-E----EECCEEe
Confidence 445334579999999999999984 21 35666666666677788997765 466766543 3 4578999
Q ss_pred EEeccCcCCCCeeecCCC-CCCCCCCCEEEEcCC
Q 037610 340 TVFGPTCDAFDEVFTGHK-LPELEVNDWLVFSEM 372 (405)
Q Consensus 340 ~v~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 372 (405)
+|+|++|| |+++.|++ .|++++||.|++.+.
T Consensus 299 pivGrv~M--D~~~vdvt~~~~~~~Gd~v~l~g~ 330 (365)
T cd06826 299 PVVGKVSM--NTVMVDVTDIPGVKAGDEVVLFGK 330 (365)
T ss_pred eeeceeee--ceEEEeCCCCCCCCCCCEEEEECC
Confidence 99999999 99999985 578999999987765
No 31
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=2.5e-30 Score=249.84 Aligned_cols=295 Identities=16% Similarity=0.158 Sum_probs=227.6
Q ss_pred cE-EEEeHHHHHHHHHHHHHhCCCCceeeeeccCC----cHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcC
Q 037610 52 PF-YLMDLGVVVSLYNHMISNLPMIHPHYAVKCNP----EPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 52 P~-~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
|. ..+|+++|++|++.+++..++.+++.+||||+ ...|++.|.++|+ +|.||+++|+..+|++|++...|+..+
T Consensus 4 ~~~~~Idl~Al~~N~~~i~~~~~~~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~~IlvL~ 83 (360)
T COG0787 4 PATAEIDLGALRHNLRALRELAGPAKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGAPILVLE 83 (360)
T ss_pred CEEEEEeHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCHHHHHHHHHHcCCCEEEECcHHHHHHHHHcCCCCCCEEEEc
Confidence 44 55999999999999999988899999999998 6899999999999 999999999999999999853466666
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCC---CCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHH-HH
Q 037610 126 PCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHP---KSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKA-AE 201 (405)
Q Consensus 126 p~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~---~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~-~~ 201 (405)
...++++++.++++++. .+|.|.+|++.+.+... ..++.|++++++ +|+|+ .+++....+.. .+
T Consensus 84 g~~~~~~~~~~~~~~l~-~~v~s~~ql~~l~~~~~~~~~l~vhLkiDTGM---------~RlG~--~~~e~~~~~~~~~~ 151 (360)
T COG0787 84 GFFPAEELELAAAYNLT-PVVNSLEQLEALKNAALKNKPLKVHLKIDTGM---------NRLGL--RPEEAVALAIDLIA 151 (360)
T ss_pred CcCChhhHHHHHHcCCe-EEECCHHHHHHHHHhhhhcCceEEEEEECCCC---------CcCCC--ChHHHHHHHHHHhh
Confidence 55667777899999995 89999999999887543 255666666544 89999 77776665555 44
Q ss_pred HcCCeEEEEEEecCCCCC-CHHHHHHHHHHHHHHHHHHHhCCC-CchhHHHHHHH-----HHhCC--CCCcEEE-ECCch
Q 037610 202 ASGLSVVGVSFHVGSEAT-NFAAFRGAIAAAKAVFDTAARTSN-NKMRKLFKLIF-----RELLP--GSSLKVI-SEPGR 271 (405)
Q Consensus 202 ~~~l~l~Gih~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~G~-~~~~~li~~~l-----~~~~~--~~~~~l~-~EPGr 271 (405)
..++.+.|+.+|+++.+. +......|+++|.. ...++ +...++.|++. +.+|+ |||+-++ +.|-.
T Consensus 152 ~~~~~~~gi~SHfa~ADe~~~~~~~~Q~~~F~~-----~~~~~~~~~~h~aNSa~~~~~~~~~~d~vRpGi~lYG~~P~~ 226 (360)
T COG0787 152 LKNLDLEGIFSHFACADEPEDPYTLKQLERFNL-----AKQGLPGELSHLANSAGLLLGPDYHFDMVRPGIALYGLSPSG 226 (360)
T ss_pred ccCCceEEEEcccCCCCCCCChHHHHHHHHHHH-----HhccCCCceEEEeccHHHhcCcccccceeecceeeecCCccc
Confidence 467779999999999853 34466788888872 22332 11222234422 24566 7888887 45544
Q ss_pred h---hhccceeEEEEEEEEEEeC--C----eeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeEEEe
Q 037610 272 F---FAASAFTLYAQIIGKRVRG--E----LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVF 342 (405)
Q Consensus 272 ~---lv~~a~~l~t~V~~~k~~~--~----~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~ 342 (405)
. -.+|+++|.++|+++|+.. + |.+|.....+..+..+++|.++. |+.++++.. + ..++++++++
T Consensus 227 ~~~~~lkpvmtl~a~ii~vr~v~~Ge~VgYG~t~~a~~~t~iavv~iGYaDG~--pR~~~~~~~-V----li~G~r~piv 299 (360)
T COG0787 227 GLDNGLKPVMTLKARIIQVRTVPAGETVGYGATFTAERDTRIAVVAIGYADGY--PRALSNGTP-V----LINGKRVPIV 299 (360)
T ss_pred ccCCCcceeEEEEEEEEEEEEeCCCCcccCCcEEEccCCceEEEEeccccCCc--hhhcCCCCE-E----EECCEEeeEe
Confidence 3 4799999999999999862 2 46787777777777889997776 466765443 3 5688999999
Q ss_pred ccCcCCCCeeecCCC-CCCCCCCCEEEEcCC
Q 037610 343 GPTCDAFDEVFTGHK-LPELEVNDWLVFSEM 372 (405)
Q Consensus 343 G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 372 (405)
|++|| |+++.|+. +|++++||+|++.+.
T Consensus 300 GrVsM--D~~~Vdl~~~~~~~~Gd~V~L~G~ 328 (360)
T COG0787 300 GRVSM--DMIMVDLTDLPQVKVGDEVELFGE 328 (360)
T ss_pred eEEee--eeEEEECCCCCCCCCCCEEEEECC
Confidence 99999 99999985 677999999998776
No 32
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.97 E-value=1.8e-29 Score=249.55 Aligned_cols=297 Identities=14% Similarity=0.160 Sum_probs=228.0
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC----cHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcC
Q 037610 52 PFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP----EPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
.+..+|+++|++|++.+++..+ +.+++.+||||+ ..++++.+.+.|+ +|.|++++|++.++++|++.+ |++.+
T Consensus 2 ~~~~Idl~al~~N~~~i~~~~~~~~~i~~VVKanAYGhG~~~va~~l~~~G~~~faVa~~~EA~~Lr~~Gi~~~-Ilvl~ 80 (368)
T cd06825 2 AWLEIDLSALEHNVKEIKRLLPSTCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGIKGE-ILILG 80 (368)
T ss_pred eEEEEEHHHHHHHHHHHHHhCCCCCeEEEEEeccccCCCHHHHHHHHHHcCCCEEEEccHHHHHHHHhcCCCCC-EEEEc
Confidence 3567999999999999999886 678999999975 7999999999999 999999999999999999765 55545
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHH-HcC
Q 037610 126 PCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAE-ASG 204 (405)
Q Consensus 126 p~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~-~~~ 204 (405)
+. .++++..++++++. ++++|.++++.+.+..+..+++|.|++++ +|+|+ .++++ +.+..+. .++
T Consensus 81 ~~-~~~~~~~~~~~~l~-~~i~~~~~l~~l~~~~~~~~vhlkvDtGm---------~R~G~--~~~~~-~~~~~~~~~~~ 146 (368)
T cd06825 81 YT-PPVRAKELKKYSLT-QTLISEAYAEELSKYAVNIKVHLKVDTGM---------HRLGE--SPEDI-DSILAIYRLKN 146 (368)
T ss_pred CC-CHHHHHHHHHcCCE-EEECCHHHHHHHHhcCCCceEEEEeeCCC---------CCCCC--CHHHH-HHHHHHHhCCC
Confidence 43 46889999999984 89999999999988776677888887765 89999 77665 4444443 468
Q ss_pred CeEEEEEEecCCCCC-CH---HHHHHHHHHHHHHHHHHHhCCCCchh--HHHHH--HH---HHhCC--CCCcEEE-ECCc
Q 037610 205 LSVVGVSFHVGSEAT-NF---AAFRGAIAAAKAVFDTAARTSNNKMR--KLFKL--IF---RELLP--GSSLKVI-SEPG 270 (405)
Q Consensus 205 l~l~Gih~H~gs~~~-~~---~~~~~~i~~~~~~~~~~~~~G~~~~~--~li~~--~l---~~~~~--~~~~~l~-~EPG 270 (405)
+++.|+++|+++... +. ....+|+++|.++.+.++..|+ +.. ++.|+ .+ ...++ ++|.-++ ..|.
T Consensus 147 l~~~Gi~tH~a~ad~~~~~~~~~~~~Q~~~f~~~~~~l~~~g~-~~~~~h~~nSa~~l~~~~~~~d~vR~G~~lYG~~p~ 225 (368)
T cd06825 147 LKVSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKARGI-EVGKIHIQSSYGILNYPDLKYDYVRPGILLYGVLSD 225 (368)
T ss_pred CcEEEEECCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHhcCC-CCCcEEeeCCHHHhCCccccCCeEccCeEEECCCCC
Confidence 999999999998642 22 2446789999999988876674 322 23333 12 11344 6777665 3442
Q ss_pred h-------hhhccceeEEEEEEEEEEeC--C----eeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCcee
Q 037610 271 R-------FFAASAFTLYAQIIGKRVRG--E----LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTY 337 (405)
Q Consensus 271 r-------~lv~~a~~l~t~V~~~k~~~--~----~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (405)
. .-+.|+++|.++|+.+|... + +.+|.....+..+..+++|.++. ++.+++....+ ..+++
T Consensus 226 ~~~~~~~~~~l~pv~~l~a~v~~vk~~~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~--~r~ls~~~~~V----~i~g~ 299 (368)
T cd06825 226 PNDPTKLGLDLRPVLSLKAKVILVRKVAKGEAVGYGRLFVASRTTRIATVSIGYADGY--PRSLSNQKAYV----LINGK 299 (368)
T ss_pred CccccccccCceeeEEEEEEEEEEEEcCCCCcCCCCCcEEcCCCcEEEEEeeecccCc--CcccCCCccEE----EECCE
Confidence 1 24789999999999999842 2 45677766667777888997775 46676643113 45889
Q ss_pred eEEEeccCcCCCCeeecCCC-CCCCCCCCEEEEcCC
Q 037610 338 NSTVFGPTCDAFDEVFTGHK-LPELEVNDWLVFSEM 372 (405)
Q Consensus 338 ~~~v~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 372 (405)
+++|+|++|| |+++.|++ .|++++||.|+|.+.
T Consensus 300 ~~pivGri~M--D~~~vdvt~~~~~~~Gd~v~l~G~ 333 (368)
T cd06825 300 RAPIIGNICM--DQLMVDVTDIPEVKEGDTATLIGQ 333 (368)
T ss_pred EeeeeeEeec--ceEEEECCCCCCCCCCCEEEEEcC
Confidence 9999999999 99999985 568999999987765
No 33
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.97 E-value=2.6e-28 Score=239.88 Aligned_cols=290 Identities=13% Similarity=0.104 Sum_probs=221.9
Q ss_pred EEEEeHHHHHHHHHHHHHhCCCCceeeeeccCC----cHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcCCC
Q 037610 53 FYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNP----EPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYANPC 127 (405)
Q Consensus 53 ~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~ 127 (405)
...+|+++|++|++.+++..++.+++.+||||+ ..+|++.+.+ + +|.|++++|+..++++|++.+.+++.|+
T Consensus 5 ~~~Idl~al~~N~~~i~~~~~~~~i~aVVKanAYGhG~~~va~~l~~--~~~faVa~l~Ea~~LR~~Gi~~~Ilvl~~~- 81 (355)
T PRK03646 5 QASLDLQALKQNLSIVREAAPGARVWSVVKANAYGHGIERIWSALGA--TDGFAVLNLEEAITLRERGWKGPILMLEGF- 81 (355)
T ss_pred EEEEEHHHHHHHHHHHHHhCCCCeEEEEEeeccccCCHHHHHHHHhc--CCEEEEeeHHHHHHHHhcCCCCCEEEEeCC-
Confidence 466999999999999999888889999999975 7899998864 6 9999999999999999998764554454
Q ss_pred CCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC--CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH-cC
Q 037610 128 KPVSHIKYAASVGVNLTTVDSVEELDKIRNWH--PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA-SG 204 (405)
Q Consensus 128 k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~--~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~-~~ 204 (405)
..+++++.+.++++. ++++|.++++.+.+.. +..+++|.|++++ +|+|+ .++|+.++++.++. ++
T Consensus 82 ~~~~~~~~~~~~~l~-~~i~s~~~l~~l~~~~~~~~~~vhLkvDTGM---------~R~G~--~~~e~~~~~~~i~~~~~ 149 (355)
T PRK03646 82 FHAQDLELYDQHRLT-TCVHSNWQLKALQNARLKAPLDIYLKVNSGM---------NRLGF--QPERVQTVWQQLRAMGN 149 (355)
T ss_pred CCHHHHHHHHHCCCE-EEECCHHHHHHHHHhccCCCeEEEEEeeCCC---------CCCCC--CHHHHHHHHHHHHhCCC
Confidence 467889999999995 8999999999998753 3456777777655 89999 88888888888765 58
Q ss_pred CeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH--H---HHhCC--CCCcEEE-ECCch-----
Q 037610 205 LSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKLFKLI--F---RELLP--GSSLKVI-SEPGR----- 271 (405)
Q Consensus 205 l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~~~~~~li~~~--l---~~~~~--~~~~~l~-~EPGr----- 271 (405)
+++.|+++|+++... .+...+|+++|.++.+.++ ...++.|++ + +..++ ++|+-++ .+|..
T Consensus 150 l~~~Gi~sH~a~ad~-~~~~~~Q~~~F~~~~~~~~-----~~~h~~nSa~~~~~~~~~~d~vR~Gi~lYG~~p~~~~~~~ 223 (355)
T PRK03646 150 VGEMTLMSHFARADH-PDGISEAMARIEQAAEGLE-----CERSLSNSAATLWHPQAHFDWVRPGIILYGASPSGQWRDI 223 (355)
T ss_pred CEEEEEEcCCCCCCC-CCHHHHHHHHHHHHHhccC-----CCeeeeCCHHHHCCccccCCeeccceeeeCCCCCcccccc
Confidence 999999999998753 2235678888877764221 112223331 1 22344 6787776 44521
Q ss_pred --hhhccceeEEEEEEEEEEeCC------eeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeEEEec
Q 037610 272 --FFAASAFTLYAQIIGKRVRGE------LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFG 343 (405)
Q Consensus 272 --~lv~~a~~l~t~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G 343 (405)
.-..|+++|.++|+.+|..+. |.+|.....+..+..+++|.++. ++.+++... + ..++++++|+|
T Consensus 224 ~~~~lkpv~~l~a~v~~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~--~r~ls~~~~-v----~i~g~~~pivG 296 (355)
T PRK03646 224 ANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARREQRIGIVAAGYADGY--PRHAPTGTP-V----LVDGVRTRTVG 296 (355)
T ss_pred cccCceEEEEEEEEEEEEEEcCCcCCcCCCCeEEcCCCcEEEEEeecccccc--CcccCCCCE-E----EECCEEeeeee
Confidence 127999999999999998632 35676666666677788997775 466665443 2 45789999999
Q ss_pred cCcCCCCeeecCCC-CCCCCCCCEEEEcCC
Q 037610 344 PTCDAFDEVFTGHK-LPELEVNDWLVFSEM 372 (405)
Q Consensus 344 ~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 372 (405)
++|| |+++.|++ .|++++||.++|.+.
T Consensus 297 rv~M--D~~~vDvt~~~~~~~Gd~V~l~G~ 324 (355)
T PRK03646 297 TVSM--DMLAVDLTPCPQAGIGTPVELWGK 324 (355)
T ss_pred EEec--ceEEEECCCCCCCCCCCEEEEECC
Confidence 9999 99999985 578899999998875
No 34
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.96 E-value=5.7e-27 Score=254.47 Aligned_cols=315 Identities=13% Similarity=0.081 Sum_probs=243.8
Q ss_pred cCCcHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC----cHHHHHHHHHcCC-eEEEc
Q 037610 30 TKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP----EPALLEALAALGS-NFDCG 103 (405)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~----~~~vl~~l~~~G~-g~~va 103 (405)
.+..++++++.+.. ..+. ++.++|+++|++|++.+++..+ +.+++.+||||+ ..+|++.+.+.|+ +|.|+
T Consensus 442 r~~~le~i~~~~~~---~~~~-~~~~Idl~al~~N~~~i~~~~~~~~k~~aVvKa~aYGhG~~~va~~l~~~G~~~f~Va 517 (822)
T PRK11930 442 RKFEFEQITELLEQ---KVHE-TVLEINLNAIVHNLNYYRSKLKPETKIMCMVKAFAYGSGSYEIAKLLQEHRVDYLAVA 517 (822)
T ss_pred CCCCHHHHHHHHHH---hhhh-HHhhhhHHHHHHHHHHHHhhCCCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEe
Confidence 34888899988843 3456 6788999999999999998775 688999999998 6899999999999 99999
Q ss_pred CHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC-----CCCeEEEEEecCCCCCCCC
Q 037610 104 SRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH-----PKSDLLIRIKSPDDSGAKY 178 (405)
Q Consensus 104 S~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~-----~~~~v~lRi~~~~~~~~~~ 178 (405)
+++|+..++++|++.+ |++.+|. ++++..++++++. ++++|.++++.+.+.+ +..+++|.|++++
T Consensus 518 ~l~Ea~~lr~~g~~~~-Ilvl~~~--~~~~~~~~~~~l~-~~i~s~~~l~~l~~~~~~~~~~~~~v~l~vDtGm------ 587 (822)
T PRK11930 518 YADEGVSLRKAGITLP-IMVMNPE--PTSFDTIIDYKLE-PEIYSFRLLDAFIKAAQKKGITGYPIHIKIDTGM------ 587 (822)
T ss_pred eHHHHHHHHhcCCCCC-EEEEeCC--HHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCCceEEEEEeeCCC------
Confidence 9999999999999865 6667774 6889999999985 8999999999988754 3345666666544
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHH-cCCeEEEEEEecCCCCC-CH-HHHHHHHHHHHHHHHHHHhCC-CCchhHHHHHH-
Q 037610 179 PLDSKYGAGHHPQEIMPLLKAAEA-SGLSVVGVSFHVGSEAT-NF-AAFRGAIAAAKAVFDTAARTS-NNKMRKLFKLI- 253 (405)
Q Consensus 179 ~~~srfGi~~~~~e~~~~~~~~~~-~~l~l~Gih~H~gs~~~-~~-~~~~~~i~~~~~~~~~~~~~G-~~~~~~li~~~- 253 (405)
+|+|+ .++++.++++.++. +++++.|+++|+++... +. ....+|+++|.++.+.++..| .....++.|++
T Consensus 588 ---~R~G~--~~~~~~~~~~~i~~~~~l~~~Gi~tH~~~ad~~~~~~~~~~q~~~f~~~~~~l~~~~~~~~~~h~~nS~~ 662 (822)
T PRK11930 588 ---HRLGF--EPEDIPELARRLKKQPALKVRSVFSHLAGSDDPDHDDFTRQQIELFDEGSEELQEALGYKPIRHILNSAG 662 (822)
T ss_pred ---CCCCC--ChHHHHHHHHHHHhCCCCcEEEEECCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCCcEEccCCHH
Confidence 89999 88888888887765 58999999999998643 32 344689999999988887543 21223444442
Q ss_pred H----HHhCC--CCCcEEE-ECCc--h-hhhccceeEEEEEEEEEEeC--C----eeEEEEecCCCCCChhhhhhccccc
Q 037610 254 F----RELLP--GSSLKVI-SEPG--R-FFAASAFTLYAQIIGKRVRG--E----LREYWINDGKFGSLAWVTCDEAIAK 317 (405)
Q Consensus 254 l----~~~~~--~~~~~l~-~EPG--r-~lv~~a~~l~t~V~~~k~~~--~----~~~~~i~dg~~~~~~~~~~~~~~~~ 317 (405)
+ +.+++ |+|+.++ ..|. + .-+.|+++|.++|+.+|... + |.+|....++..+..+++|.++.
T Consensus 663 ~~~~~~~~~d~vR~G~~lyG~~p~~~~~~~l~pv~~l~a~i~~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~-- 740 (822)
T PRK11930 663 IERFPDYQYDMVRLGIGLYGVSASGAGQQALRNVSTLKTTILQIKHVPKGETVGYGRKGVVTKPSRIATIPIGYADGL-- 740 (822)
T ss_pred HhCCccccCCeEeeCceeECCCCCCCccccCEEeeEEEEEEEEEEEcCCcCCCCCCCcEEcCCCcEEEEEeeeccccc--
Confidence 2 12344 6787776 4453 1 24799999999999999863 2 46777777777788889997775
Q ss_pred cccCCCC-CCCCccCCCCceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCC
Q 037610 318 CTPLPFA-SSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEM 372 (405)
Q Consensus 318 ~~~l~~~-~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~ 372 (405)
++.+++. .. + ..++++++|+|++|| |+++.|++--++++||.|++.+.
T Consensus 741 ~r~~s~~~~~-v----~i~g~~~pivGrv~M--D~~~vdvt~~~~~~Gd~v~l~g~ 789 (822)
T PRK11930 741 NRRLGNGVGY-V----LVNGQKAPIVGNICM--DMCMIDVTDIDAKEGDEVIIFGE 789 (822)
T ss_pred ccccCCCceE-E----EECCEEcceeeEeec--ceEEEEcCCCCCCCCCEEEEECC
Confidence 4666554 33 3 457899999999999 99999985227899999987764
No 35
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.95 E-value=1.4e-26 Score=212.00 Aligned_cols=174 Identities=33% Similarity=0.529 Sum_probs=154.9
Q ss_pred HHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHc
Q 037610 61 VVSLYNHMISNLP-MIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASV 139 (405)
Q Consensus 61 l~~n~~~~~~~~~-~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~ 139 (405)
|++|++.+++.++ +++++|++|||+++.+++.+.+.+.+|+|+|.+|+..++++|+++.+|+|+||.+++++++.++++
T Consensus 1 l~~N~~~i~~~~~~~~~i~~~vKan~~~~i~~~~~~~~~~~~v~s~~E~~~~~~~g~~~~~I~~~~~~~~~~~l~~~~~~ 80 (211)
T cd06808 1 IRHNYRRLREAAPAGITLFAVVKANANPEVARTLAALGTGFDVASLGEALLLRAAGIPPEPILFLGPCKQVSELEDAAEQ 80 (211)
T ss_pred ChHHHHHHHHhCCCCCEEEEEEecCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCCCHHHEEEcCCCCCHHHHHHHHHc
Confidence 5799999999998 899999999999999999999998899999999999999999988899999999999999999999
Q ss_pred CCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHc-CCeEEEEEEec
Q 037610 140 GVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEAS-GLSVVGVSFHV 214 (405)
Q Consensus 140 gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~-~l~l~Gih~H~ 214 (405)
|...+++||+++++.+.+.+ +..+++|||+++. ..+|||+ +.+++.++++.+++. ++++.|||+|+
T Consensus 81 ~~~~~~ids~~~l~~l~~~~~~~~~~~~v~lrv~~g~-------~~~R~G~--~~~e~~~~~~~i~~~~~l~l~Gl~~H~ 151 (211)
T cd06808 81 GVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTGD-------ENGKFGV--RPEELKALLERAKELPHLRLVGLHTHF 151 (211)
T ss_pred CCCEEEeCCHHHHHHHHHHHHHhCCCceEEEEEcCCC-------CCCCCCC--CHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 54368999999999988653 6789999999752 1289999 889999999988774 79999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 037610 215 GSEATNFAAFRGAIAAAKAVFDTAARTSN 243 (405)
Q Consensus 215 gs~~~~~~~~~~~i~~~~~~~~~~~~~G~ 243 (405)
|++..+...+.++++++.++++.+++.|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (211)
T cd06808 152 GSADEDYSPFVEALSRFVAALDQLGELGI 180 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99876777888999999999988877774
No 36
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.94 E-value=6.7e-26 Score=223.36 Aligned_cols=299 Identities=13% Similarity=0.118 Sum_probs=209.0
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccC-CcHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcCCC
Q 037610 52 PFYLMDLGVVVSLYNHMISNLP--MIHPHYAVKCN-PEPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYANPC 127 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKaN-~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~ 127 (405)
|+.++|+++|++|++.+++..+ +++++.++||| ..+++++.+.+.|+ +|.|++++|+..+++.|+..+.+++ |+.
T Consensus 2 P~l~Idl~al~~Ni~~i~~~~~~~~~~l~~vvKa~hg~~~va~~l~~~G~~~f~va~i~EA~~lr~~G~~~~illl-g~~ 80 (353)
T cd06815 2 PRLEINLSKIRHNAKVLVELCKSRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGISGPKMLL-RIP 80 (353)
T ss_pred CeEEEeHHHHHHHHHHHHHHHhhcCCEEEEEEcccCCCHHHHHHHHHcCCCEEEeccHHHHHHHHhcCCCCCEEEE-CCC
Confidence 8999999999999999998875 68999999999 68999999999999 9999999999999999997654444 544
Q ss_pred CCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH-
Q 037610 128 KPVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA- 202 (405)
Q Consensus 128 k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~- 202 (405)
.+++++.+++++.. .+++|.++++.+.+.+ +..+++|.|++++ +|+|+ .++|+.++++.++.
T Consensus 81 -~~~~~~~~~~~~~~-~~i~s~~~~~~l~~~a~~~~~~~~vhlkvDtGm---------~R~G~--~~~e~~~~~~~i~~~ 147 (353)
T cd06815 81 -MLSEVEDVVKYADI-SLNSELETIKALSEEAKKQGKIHKIILMVDLGD---------LREGV--LPEDLLDFVEEILKL 147 (353)
T ss_pred -CHHHHHHHHhhcce-eccChHHHHHHHHHHHHHcCCccceEEEEecCC---------Ccccc--CHHHHHHHHHHHhCC
Confidence 47899999999874 6788999999887643 3457788887654 89999 88888888888776
Q ss_pred cCCeEEEEEEecCCCCC-CHHHHHHHHHHHHHHHHHHHh-CCCCchh--HHHHH-HHHH--------hCC--CCCcEEE-
Q 037610 203 SGLSVVGVSFHVGSEAT-NFAAFRGAIAAAKAVFDTAAR-TSNNKMR--KLFKL-IFRE--------LLP--GSSLKVI- 266 (405)
Q Consensus 203 ~~l~l~Gih~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~-~G~~~~~--~li~~-~l~~--------~~~--~~~~~l~- 266 (405)
.++++.||++|+++... +.. ..+.+++.++.+.++. .|+ ... ++-++ .+.. .++ ++|..++
T Consensus 148 ~~l~~~Gi~tH~~~~~~~~~~--~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~S~~~~~~~~~~~~~~~~~vRpG~~l~y 224 (353)
T cd06815 148 PGIELVGIGTNLGCYGGVLPT--EENMGKLVELKEEIEKEFGI-KLPIISGGNSASLPLLLKGELPGGINQLRIGEAILL 224 (353)
T ss_pred CCcEEEecccCccccCCCCCC--HHHHHHHHHHHHHHHHhhCC-CCCEEeccchHHHHHHHhcCCcCCCceeEeehhhhc
Confidence 58999999999997532 111 1233444444444443 343 221 22222 1111 244 5665542
Q ss_pred -ECCch-----hhhccceeEEEEEEEEEEe---CCee----------EEEEecCCCCCChhhhhhccccccccCCCCCCC
Q 037610 267 -SEPGR-----FFAASAFTLYAQIIGKRVR---GELR----------EYWINDGKFGSLAWVTCDEAIAKCTPLPFASSF 327 (405)
Q Consensus 267 -~EPGr-----~lv~~a~~l~t~V~~~k~~---~~~~----------~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (405)
..|.. ....+++++.|+|+.+|.. ..|. .|.....+..+..+++|.++.+ +.+++
T Consensus 225 G~~p~~~~~~~~~l~p~~~l~s~Vi~i~~~~~~~~g~~~yd~~G~~~~~~~~~~~~ia~v~~GyaDG~~--r~ls~---- 298 (353)
T cd06815 225 GRETTYNEPIPGLYQDAFTLEAEIIEIKEKPSVPIGEIGLDAFGNKPEFEDRGIRKRAILAIGRQDVDP--DGLTP---- 298 (353)
T ss_pred cccccCCccccccccccEEEEEEEEEEecCCCCCCcceeeccCCCCceeecCCceEEEEEecccccCCH--HhCcc----
Confidence 33422 1368999999999999972 1111 2322222233345667765542 33332
Q ss_pred CccCCCCceeeEEEeccCcCCCCeeecCCC-CC-CCCCCCEEE-EcCCCccccccCCCC
Q 037610 328 TTSKGLTRTYNSTVFGPTCDAFDEVFTGHK-LP-ELEVNDWLV-FSEMGAYTTACGTNF 383 (405)
Q Consensus 328 ~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~-lp-~l~~GD~l~-~~~~GAY~~~~~~~f 383 (405)
.+.+++++|. || |+++.++. .| ++++||.|+ |++-.+-|..+-+.|
T Consensus 299 -------~g~~~~ivG~-~m--d~~~vdv~~~~~~~~~Gd~v~l~p~h~~~~~~~~~~~ 347 (353)
T cd06815 299 -------VDNGIEILGA-SS--DHLILDITDSDRDYKVGDEIRFNLDYGALLRAMTSPY 347 (353)
T ss_pred -------CCCCCeEEec-CC--ceEEEEccCCCCCCCCCCEEEEEeCHHHHHHHhcCCC
Confidence 2356899998 99 99999884 45 789999985 777666555554444
No 37
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.94 E-value=8.6e-25 Score=217.48 Aligned_cols=237 Identities=18% Similarity=0.232 Sum_probs=169.5
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEE
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIY 123 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~ 123 (405)
+++| |+++||+++|++|++++++.++ +++++|++|||+++++++.+.+.|+ +|+|+|++|++.++++|++ +|++
T Consensus 3 ~~~t-P~~vid~~~l~~Ni~~~~~~~~~~~~~l~~~vKa~~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~aG~~--~il~ 79 (374)
T cd06812 3 ALDT-PFLLLDEARMDRNIARLRQRLSRLGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEAGYR--DILY 79 (374)
T ss_pred CCCC-ceEEEeHHHHHHHHHHHHHHHHHcCCceeeEecccCCHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCC--eeEE
Confidence 5789 9999999999999999999886 6889999999999999999999998 8999999999999999995 5777
Q ss_pred cCCCCCHHHHHHHHH---cCCc-EEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhh--H
Q 037610 124 ANPCKPVSHIKYAAS---VGVN-LTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQE--I 193 (405)
Q Consensus 124 ~gp~k~~~~l~~a~~---~gv~-~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e--~ 193 (405)
..+ +++++++.+++ .++. .++|||.++++.|.+.+ ...++.|||++++ +|||+ .+++ +
T Consensus 80 ~~~-~~~~~~~~~~~l~~~~~~~~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~G~---------~R~Gv--~~~~~~~ 147 (374)
T cd06812 80 AVG-IAPAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGVRFPVLIEIDCDG---------HRGGI--APDSDAL 147 (374)
T ss_pred eCC-CCHHHHHHHHHHHhcCCceEEEECCHHHHHHHHHHHHHcCCceEEEEEeCCCC---------CcCCC--CCCcHHH
Confidence 655 46777776654 3443 47999999999998754 3467888886543 89999 5542 5
Q ss_pred HHHHHHHHHcCCeEEEEEEecCCC--CCCHHHHH----HHHHHHHHHHHHHHhCCCCchhHH-HHHHHH-HhCCC-CCcE
Q 037610 194 MPLLKAAEASGLSVVGVSFHVGSE--ATNFAAFR----GAIAAAKAVFDTAARTSNNKMRKL-FKLIFR-ELLPG-SSLK 264 (405)
Q Consensus 194 ~~~~~~~~~~~l~l~Gih~H~gs~--~~~~~~~~----~~i~~~~~~~~~~~~~G~~~~~~l-i~~~l~-~~~~~-~~~~ 264 (405)
.++.+.++..++++.|||+|+|++ +.+.+.+. ++++.+.++++.++..|+ .++.+ +..... .+... +++
T Consensus 148 ~~l~~~i~~~~l~l~Gi~~H~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~v~~Ggt~~~~~~~~~~~~- 225 (374)
T cd06812 148 LEIARILHDGGAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAAGL-PCPVVSVGSTPTAHFAEDLTGV- 225 (374)
T ss_pred HHHHHHHhcCCceEEEEEccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCEEeecCChhhhhhcccCCc-
Confidence 566665555689999999999986 34555443 355557777777776674 44333 111000 00111 122
Q ss_pred EEECCchhhh--------------ccceeEEEEEEEEEEeCCeeEEEEecCCC
Q 037610 265 VISEPGRFFA--------------ASAFTLYAQIIGKRVRGELREYWINDGKF 303 (405)
Q Consensus 265 l~~EPGr~lv--------------~~a~~l~t~V~~~k~~~~~~~~~i~dg~~ 303 (405)
..+.||.|++ ..|+.++++|++++.. +..++.|+++
T Consensus 226 ~el~~G~y~~~D~~~~~~~~~~~~~~al~v~~~Vis~~~~---~~~~~~d~G~ 275 (374)
T cd06812 226 TEVRAGVYVFFDLVMAGIGVCGLDDIALSVVTTVIGHQPE---KGWILIDAGW 275 (374)
T ss_pred eEeccCceeeccHHHHhcCCCCchheEEEEEEEEECCCCC---CCeEEEcccc
Confidence 2456665533 2588899999997532 1234446543
No 38
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.94 E-value=2.2e-25 Score=220.46 Aligned_cols=224 Identities=20% Similarity=0.233 Sum_probs=172.2
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEE
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIY 123 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~ 123 (405)
+++| |+++||+++|++|++.+++.++ +++++|++|+|+++++++.+.+.|+ +|+|+|++|++.++++|++ .|++
T Consensus 4 ~~~t-P~~~id~~~l~~N~~~l~~~~~~~~~~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~--~ili 80 (358)
T cd06819 4 EIDT-PALVLDLDALERNIKRMAAFAKAHGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAAGIR--DILI 80 (358)
T ss_pred ccCC-ceEEEEHHHHHHHHHHHHHHHHHcCCcccccchhhcCHHHHHHHHhCCCCcEEEccHHHHHHHHHCCCC--eEEE
Confidence 5789 9999999999999999999886 6889999999999999999999998 9999999999999999995 3777
Q ss_pred cCC----CCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCC-hhhHH
Q 037610 124 ANP----CKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHH-PQEIM 194 (405)
Q Consensus 124 ~gp----~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~-~~e~~ 194 (405)
..| .|..+.++.+.+.++ .+++||.+++++|.+.+ ...++.|||++++ +|||+ . .+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i-~~~vDs~~~l~~l~~~a~~~~~~~~V~l~vd~G~---------~R~Gv--~~~~~~~ 148 (358)
T cd06819 81 TNEVVGPAKIARLAALARRAPL-IVCVDHPDNVRALAAAAVEAGVRLDVLVEIDVGQ---------GRCGV--PPGEAAL 148 (358)
T ss_pred ECCcCCHHHHHHHHHHhcCCCE-EEEECCHHHHHHHHHHHHhcCCceEEEEEECCCC---------CcCCC--CChHHHH
Confidence 744 444555666778887 58999999999998764 3467888887654 79999 6 67788
Q ss_pred HHHHHHHH-cCCeEEEEEEecCCCC------CCHHHHHHHHHHHHHHHHHHHhCCCCchhHH---------H--H-HHHH
Q 037610 195 PLLKAAEA-SGLSVVGVSFHVGSEA------TNFAAFRGAIAAAKAVFDTAARTSNNKMRKL---------F--K-LIFR 255 (405)
Q Consensus 195 ~~~~~~~~-~~l~l~Gih~H~gs~~------~~~~~~~~~i~~~~~~~~~~~~~G~~~~~~l---------i--~-~~l~ 255 (405)
++++.+++ +++++.|||+|.|+.. .+.+.+.++++.+.++.+.++..|+ .++.+ . . ..+.
T Consensus 149 ~l~~~i~~~~~l~l~Gi~~y~G~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~vsgGgs~~~~~~~~~~~~~ 227 (358)
T cd06819 149 ALARTIAALPGLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEAAGL-PCEIVTGGGTGTYEFEAASGVYT 227 (358)
T ss_pred HHHHHHHhCCCceEeEEEeeCchhccCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCEEecCCCcChhhhccCCcce
Confidence 99888776 5899999999888742 2234556777888888887776564 33322 0 0 0011
Q ss_pred HhCCCCCcEE---------EECCchhhhccceeEEEEEEEEE
Q 037610 256 ELLPGSSLKV---------ISEPGRFFAASAFTLYAQIIGKR 288 (405)
Q Consensus 256 ~~~~~~~~~l---------~~EPGr~lv~~a~~l~t~V~~~k 288 (405)
+. ++|.-+ ..|||+....+|++++++|+.+.
T Consensus 228 el--r~G~~i~~d~~~~~~~~~~~~~~~~~A~~v~a~Vis~~ 267 (358)
T cd06819 228 EL--QAGSYVFMDADYGDNEDEGGAPPFENALFVLTTVISAN 267 (358)
T ss_pred EE--ccCceEEecHHHHhcCCccCCCccceeeEEEEEEeeec
Confidence 11 122111 13788989999999999999954
No 39
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.93 E-value=1.1e-23 Score=209.23 Aligned_cols=247 Identities=13% Similarity=0.082 Sum_probs=185.1
Q ss_pred HHHHHHHHHhhc--CCCCCccEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccC-CcHHHHHHHHHcCC-eEEEcCHHH
Q 037610 34 LTEFMQSTILKR--QEFDEVPFYLMDLGVVVSLYNHMISNLP--MIHPHYAVKCN-PEPALLEALAALGS-NFDCGSRSE 107 (405)
Q Consensus 34 ~~~~~~~~~~~~--~~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKaN-~~~~vl~~l~~~G~-g~~vaS~~E 107 (405)
-..||+..+.-. ..... ++|+||+++|++|++.+++.++ +.+++|++||| .++++++.+.+.|+ +|+|+|.+|
T Consensus 10 n~~~~~~a~~~~~~g~~~~-~~yvIDl~~I~~N~~~l~~~~~~~~~~l~~vvKAna~~~~ia~~l~~~G~~g~~vas~~E 88 (382)
T cd06811 10 NPALIEAALTLHQSGAIPP-DTYVIDLDQIEENARLLAETAEKYGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKE 88 (382)
T ss_pred CHHHHHHHHHHHHcCCCCC-CEEEecHHHHHHHHHHHHHHHhhCCCEEEEEEccCCCCHHHHHHHHHcCCCeEeEecHHH
Confidence 356677654332 34456 7999999999999999999886 68899999999 59999999999999 999999999
Q ss_pred HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCC
Q 037610 108 IEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSK 183 (405)
Q Consensus 108 ~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~sr 183 (405)
++.++++|+++..|.. +..++.++++.++++++..++|||+++++.|.+.+ +..+++|||+++++ .+.+++|
T Consensus 89 a~~lr~aGi~~~~I~~-l~~~~~~el~~~v~~~~~~i~V~s~~~l~~L~~~A~~~g~~~~V~LrVdtg~~---ri~~g~~ 164 (382)
T cd06811 89 ARALHEAGLPLGHVGH-LVQIPRHQVPAVLAMRPEVITVYSLEKAREISDAAVELGRVQDVLLRVYGDED---TLYPGQE 164 (382)
T ss_pred HHHHHHcCCCHHhEEE-ccCCCHHHHHHHHHcCCCEEEECCHHHHHHHHHHHHHcCCceEEEEEEECCCC---ccccCcc
Confidence 9999999998767764 44457899999999997558999999999998653 45789999998753 3555677
Q ss_pred CCCCCChhhHHHHHHHHHH-cCCeEEEEEEecCCCCCCH----HHHHHHHHHHHHHHHHHHhCCCCchhHH----HHH--
Q 037610 184 YGAGHHPQEIMPLLKAAEA-SGLSVVGVSFHVGSEATNF----AAFRGAIAAAKAVFDTAARTSNNKMRKL----FKL-- 252 (405)
Q Consensus 184 fGi~~~~~e~~~~~~~~~~-~~l~l~Gih~H~gs~~~~~----~~~~~~i~~~~~~~~~~~~~G~~~~~~l----i~~-- 252 (405)
.|+ +++++.++++.+++ +++++.|| +|+++...+. ..+.++++.+.++.+.++..|+ .++++ .++
T Consensus 165 ~G~--~~~e~~~~~~~i~~l~~l~l~Gi-thf~~~~~d~~~~~~~~~~~~~~l~~~~~~l~~~g~-~~~~is~Gga~ss~ 240 (382)
T cd06811 165 GGF--PLEELPAVLAAIKALPGIRIAGL-TSFPCFLYDEEQGDIAPTPNLFTLLKAKELLEKRGI-EILQLNAPSATSCA 240 (382)
T ss_pred cee--cHHHHHHHHHHHHcCCCcEEEeE-cccchhhcccCcccccHHHHHHHHHHHHHHHHHCCC-CCeEEccCCCcchh
Confidence 899 89999999988876 58999999 5555532111 1245567777777777777664 43332 122
Q ss_pred HH----HHhCC--CCCcEEE-ECCc----hhhhccceeEEEEEEEEEE
Q 037610 253 IF----RELLP--GSSLKVI-SEPG----RFFAASAFTLYAQIIGKRV 289 (405)
Q Consensus 253 ~l----~~~~~--~~~~~l~-~EPG----r~lv~~a~~l~t~V~~~k~ 289 (405)
.+ +..++ +||.-++ ..|- ..-.+++++++++|..++.
T Consensus 241 ~l~~~~~~~~t~vRpG~~LyG~~p~~~~~~~~lkpam~l~s~Is~~~~ 288 (382)
T cd06811 241 TLPLLAEYGVTHGEPGHALTGTTPLHAVGDQPEKPAMVYVSEVSHTFG 288 (382)
T ss_pred hHHHHHhCCCcEEeccEEEecCcchhhccccCCcccEEEEEEEEEecC
Confidence 11 12233 5666665 2232 1236899999999999876
No 40
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=99.91 E-value=3.1e-22 Score=196.50 Aligned_cols=252 Identities=19% Similarity=0.292 Sum_probs=198.0
Q ss_pred CcHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCC----------CCceeeeeccCCcHHHHHHHHHcC----
Q 037610 32 DELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLP----------MIHPHYAVKCNPEPALLEALAALG---- 97 (405)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~----------~~~i~yavKaN~~~~vl~~l~~~G---- 97 (405)
.++.++++++-.+ .++- |+.+-..+.|.++++.+..+|. +++..|++|+|..+.|++.|.+.|
T Consensus 64 ~dL~elV~~l~~~--g~~L-PlL~rFp~IL~~Rl~~ln~aF~~Ai~ey~Y~g~Y~~VyPIKvNQ~r~vVe~Lv~~g~~~~ 140 (652)
T COG1166 64 VDLAELVKALRDR--GLRL-PLLLRFPQILQHRLRSLNAAFARAIEEYGYPGGYFAVYPIKVNQHRRVVESLVASGKGYP 140 (652)
T ss_pred ccHHHHHHHHHhc--CCCC-ceEEechHHHHHHHHHHHHHHHHHHHHhCCCCceeEEEEeeecchHHHHHHHHhccCCCC
Confidence 5688899988554 6778 9999999999999998887762 578899999999999999999874
Q ss_pred CeEEEcCHHHHHHHHhCC-CCCCcEEEcCCCCCHHHHHHHH---HcCCc-EEEecCHHHHHHHHhH----CCCCeEEEEE
Q 037610 98 SNFDCGSRSEIEAVLLLD-VSPDRIIYANPCKPVSHIKYAA---SVGVN-LTTVDSVEELDKIRNW----HPKSDLLIRI 168 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G-~~~~~Ii~~gp~k~~~~l~~a~---~~gv~-~i~vds~~el~~i~~~----~~~~~v~lRi 168 (405)
.|+|..|..|+.+++..- -+..-|+++ ..|+.+.|+.|+ +.|-+ +++++-++|++.+.+. +.+.++++|+
T Consensus 141 ~GLEAGSK~ELm~vLA~~~~~~~~IvCN-GyKDrEyI~lAlig~kLGh~v~ivIEklsEl~~VleeA~~lgvkP~lGvR~ 219 (652)
T COG1166 141 LGLEAGSKAELMAVLAHAGNPGSLIVCN-GYKDREYIRLALIGEKLGHKVYIVIEKLSELDLVLEEAKQLGVKPRLGVRA 219 (652)
T ss_pred CcccCCCHHHHHHHHHhcCCCCCeEEec-CcccHHHHHHHHHHHHhCCceEEEEechHHHHHHHHHHHHcCCCCcceeEE
Confidence 599999999999999864 454445555 579999999996 44422 6899999999987654 3455677777
Q ss_pred ecCCCCCCCCCC--C--CCCCCCCChhhHHHHHHHHHHcC--CeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q 037610 169 KSPDDSGAKYPL--D--SKYGAGHHPQEIMPLLKAAEASG--LSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTS 242 (405)
Q Consensus 169 ~~~~~~~~~~~~--~--srfGi~~~~~e~~~~~~~~~~~~--l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G 242 (405)
........+|.. | +|||. +..|+.++++++++.+ -.+.-+|||+|||..++.....+++.+.+++-.+.++|
T Consensus 220 RL~sqGsGkW~~SgG~ksKFGL--sa~qvL~~v~~Lre~~~Ld~l~llHFHlGSQisnI~~ik~~~rEA~r~YvEL~klG 297 (652)
T COG1166 220 RLASQGSGKWQSSGGEKSKFGL--SATQVLQVVERLREANLLDSLQLLHFHLGSQISNIRDIKTGVREAARFYVELRKLG 297 (652)
T ss_pred EEecccccccccccCchhccCC--CHHHHHHHHHHHHhcchHHhhHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 754322123332 2 89999 9999999999998753 24566899999999999999999999999998888877
Q ss_pred CCchhHH-------------------------------HHHHHHHhCC---CCCcEEEECCchhhhccceeEEEEEEEEE
Q 037610 243 NNKMRKL-------------------------------FKLIFRELLP---GSSLKVISEPGRFFAASAFTLYAQIIGKR 288 (405)
Q Consensus 243 ~~~~~~l-------------------------------i~~~l~~~~~---~~~~~l~~EPGr~lv~~a~~l~t~V~~~k 288 (405)
. +++++ +-.++.+.+. .|.|.|+.|.||++.+....|++.|+++.
T Consensus 298 a-~i~~~dVGGGLgVDYdGt~t~~~~S~NY~l~eYA~dVV~~l~d~C~~~~~p~P~IisESGRaitAHhaVLI~~Vi~v~ 376 (652)
T COG1166 298 A-NIKYFDVGGGLGVDYDGTRTQSDCSKNYGLNEYANDVVWALKDACEEKGLPHPTIISESGRAITAHHAVLIANVIGVE 376 (652)
T ss_pred C-CceEEeccCceeecccCccccccccccCCHHHHHHHHHHHHHHHHHhcCCCCCeEEeecchhhhhcceEEEeeecccc
Confidence 4 45544 1223343333 47899999999999999999999999987
Q ss_pred Ee
Q 037610 289 VR 290 (405)
Q Consensus 289 ~~ 290 (405)
..
T Consensus 377 ~~ 378 (652)
T COG1166 377 RH 378 (652)
T ss_pred cC
Confidence 63
No 41
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.90 E-value=9.9e-23 Score=202.92 Aligned_cols=219 Identities=18% Similarity=0.227 Sum_probs=160.7
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcC
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
+| |+++||+++|++|++++++.++ +++++|++|+|.++++++.+.+.|+ ||+|+|++|++.++++|++ +|+|.+
T Consensus 2 ~t-P~l~idl~~l~~N~~~m~~~~~~~~~~l~~h~Kt~~~~~i~~~~~~~G~~g~~vas~~Ea~~l~~~G~~--~il~~~ 78 (382)
T cd06818 2 SL-PLLVLDASALAHNLAWMQAFAAAHGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVR--RVLLAN 78 (382)
T ss_pred CC-cEEEEEHHHHHHHHHHHHHHHhhcCcEEEeecchhhhHHHHHHHHHcCCCEEEEeEHHHHHHHHHcCCC--eEEEec
Confidence 47 9999999999999999999884 5899999999999999999999999 9999999999999999994 588764
Q ss_pred C--CCCH-HHHHHHHHc--CCc-EEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHH
Q 037610 126 P--CKPV-SHIKYAASV--GVN-LTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMP 195 (405)
Q Consensus 126 p--~k~~-~~l~~a~~~--gv~-~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~ 195 (405)
| .++. +++..+++. +.. .++|||.++++.|.+.+ +..++.|+|++++ +|.|+. +.+++.+
T Consensus 79 ~~~~~~~~~~l~~l~~~~~~~~i~~~vds~~~l~~L~~~a~~~g~~~~v~i~vn~g~---------~R~G~~-~~~~~~~ 148 (382)
T cd06818 79 QLVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVPG---------GRTGVR-TEAEALA 148 (382)
T ss_pred CcCChHHHHHHHHhhhcCCCCCEEEEECCHHHHHHHHHHHHhcCCceEEEEEECCCC---------CCCCCC-CHHHHHH
Confidence 4 3333 347777753 432 47999999999998754 3467888888643 799992 2567888
Q ss_pred HHHHHHH-cCCeEEEEEEecCCC-----CCCHHHHHHHHHHHHHHHHHHHhCCCC--chhHH------HHHHHHHhCC--
Q 037610 196 LLKAAEA-SGLSVVGVSFHVGSE-----ATNFAAFRGAIAAAKAVFDTAARTSNN--KMRKL------FKLIFRELLP-- 259 (405)
Q Consensus 196 ~~~~~~~-~~l~l~Gih~H~gs~-----~~~~~~~~~~i~~~~~~~~~~~~~G~~--~~~~l------i~~~l~~~~~-- 259 (405)
+++.+.. +++++.|||+|.|++ ..+.+...+.++.+.++.+.+++.|.. +...+ ....+.+.+.
T Consensus 149 l~~~i~~~~~l~l~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ilSgGgT~~~~~~~~~~~~~ 228 (382)
T cd06818 149 LADAIAASPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILTAGGSAWFDLVAEALAAL 228 (382)
T ss_pred HHHHHHcCCCceEeEEEeeccccccCCChhHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEecCCHhHHHHHHhhccc
Confidence 8887765 589999999999986 133444555666666777766554421 22122 1111112222
Q ss_pred --CCCcEEEECCchhhhccceeE
Q 037610 260 --GSSLKVISEPGRFFAASAFTL 280 (405)
Q Consensus 260 --~~~~~l~~EPGr~lv~~a~~l 280 (405)
..+..+.+|||||++.+++.+
T Consensus 229 ~~~~~~~~el~pG~y~~~D~g~~ 251 (382)
T cd06818 229 ALDGPVTLVLRSGCYVTHDHGIY 251 (382)
T ss_pred ccCCceeEEEecCeeEEecHHHH
Confidence 235578899999987665443
No 42
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.90 E-value=1.1e-21 Score=195.51 Aligned_cols=164 Identities=22% Similarity=0.185 Sum_probs=136.6
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHH-cCC-eEEEcCHHHHHHHHhCCCCCCcEEEc
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAA-LGS-NFDCGSRSEIEAVLLLDVSPDRIIYA 124 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~-~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~ 124 (405)
+++| |+++||+++|++|++.+++.+++.+++|++||+.++++++.+.+ .|+ ||.|+|++|+..++++|+ .+|++.
T Consensus 8 ~~~t-P~~viDldal~~N~~~l~~~~~~~~ir~~vKa~~~~~ll~~~l~~~G~~g~~vas~~Ea~~l~~aG~--~~ILl~ 84 (388)
T cd06813 8 GLDA-PFAFVDLDALDANAADLVRRAGGKPIRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALWLARQGF--DDILVA 84 (388)
T ss_pred cCCC-CEEEEEHHHHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHhhcCCceEEEecHHHHHHHHHcCC--CeEEEe
Confidence 5789 99999999999999999998888899999999999999998877 598 999999999999999999 469999
Q ss_pred CCCCCHHHHHHHHHc-----CCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCC-CCCCCCCChhhHH
Q 037610 125 NPCKPVSHIKYAASV-----GVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLD-SKYGAGHHPQEIM 194 (405)
Q Consensus 125 gp~k~~~~l~~a~~~-----gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~-srfGi~~~~~e~~ 194 (405)
+|.+++++++.++++ ++ .++|||.++|+.|.+.+ ...++.|||++++.. ..+.+| .|-|+. +.+++.
T Consensus 85 ~p~~~~~~l~~~~~~~~~~~~i-~~~Vds~~~l~~l~~~a~~~~~~~~V~l~IDtGm~R-~G~~~G~~Rs~~~-~~~~~~ 161 (388)
T cd06813 85 YPSVDRAALRELAADPKLGATI-TLMVDSVEHLDLLDAVAAPMRVEVRVCIDIDASLRF-GGLHFGVRRSPLH-TPAQAL 161 (388)
T ss_pred CCCCCHHHHHHHHhhhccCCeE-EEEEcCHHHHHHHHHHHHhcCCceEEEEEECCCccc-cccccCcCCCCCC-CHHHHH
Confidence 998899999999985 55 48999999999998653 346889999987743 112222 345551 257788
Q ss_pred HHHHHHHH-cCCeEEEEEEecCC
Q 037610 195 PLLKAAEA-SGLSVVGVSFHVGS 216 (405)
Q Consensus 195 ~~~~~~~~-~~l~l~Gih~H~gs 216 (405)
++++.+.+ .++++.|||+|.|+
T Consensus 162 ~l~~~i~~~~~l~l~Gi~th~g~ 184 (388)
T cd06813 162 ALAKAIAARPGLRLVGLMGYEAQ 184 (388)
T ss_pred HHHHHHhcCCCcEEEEEEEEchh
Confidence 88887765 58999999999776
No 43
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.89 E-value=1.1e-21 Score=193.60 Aligned_cols=236 Identities=17% Similarity=0.150 Sum_probs=170.3
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcC
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
+| |++++|+++|++|++.+++.++ +++++|++|+|+++++++.+.+.|+ +|+|+|++|++.+++.|++ +|++..
T Consensus 2 ~t-P~l~id~~~l~~Ni~~~~~~~~~~~v~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~--~i~i~~ 78 (353)
T cd06820 2 DT-PALLIDLDRLERNIARMQAYADAHGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMADAGLS--DIFIAY 78 (353)
T ss_pred CC-ceEEEeHHHHHHHHHHHHHHHHHcCCccccccccccCHHHHHHHHhCCCCCEEEeeHHHHHHHHHCCCC--eEEEEC
Confidence 47 9999999999999999999885 5889999999999999999999998 9999999999999999994 477766
Q ss_pred CCCCHHH---HHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCCh-hhHHHHH
Q 037610 126 PCKPVSH---IKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHP-QEIMPLL 197 (405)
Q Consensus 126 p~k~~~~---l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~-~e~~~~~ 197 (405)
|...+.. +..+++..-..+++||+++++.|.+.+ +..++.|||++++ +|+|+ .+ +++.+++
T Consensus 79 ~~~~~~~~~~l~~l~~~~~~~~~vds~~~l~~L~~~a~~~~~~~~V~l~vd~G~---------~R~Gv--~~~~~~~~l~ 147 (353)
T cd06820 79 PIVGRQKLERLRALAERVTLSVGVDSAEVARGLAEVAEGAGRPLEVLVEVDSGM---------NRCGV--QTPEDAVALA 147 (353)
T ss_pred CcCCHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHhcCCeeEEEEEECCCC---------CcCCC--CChHHHHHHH
Confidence 6544443 444444332258999999999998764 3457888887643 89999 77 8888898
Q ss_pred HHHHH-cCCeEEEEEEecCCCCCC---HHHHHHHHHHHHHHHHHHHhCCCCchhHH-HHH--HHHHhCCCCCcEEEECCc
Q 037610 198 KAAEA-SGLSVVGVSFHVGSEATN---FAAFRGAIAAAKAVFDTAARTSNNKMRKL-FKL--IFRELLPGSSLKVISEPG 270 (405)
Q Consensus 198 ~~~~~-~~l~l~Gih~H~gs~~~~---~~~~~~~i~~~~~~~~~~~~~G~~~~~~l-i~~--~l~~~~~~~~~~l~~EPG 270 (405)
+.+.+ +++++.|||+|.|+.... ...+.++++++.++.+.+++.|+ ....+ +.+ .+.......+ ...+.||
T Consensus 148 ~~i~~~~~l~l~Gi~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~vs~Ggs~t~~~~~~~~~-~~elR~G 225 (353)
T cd06820 148 RAIASAPGLRFRGIFTYPGHSYAPGALEEAAADEAEALLAAAGILEEAGL-EPPVVSGGSTPTLWRSHEVPG-ITEIRPG 225 (353)
T ss_pred HHHHhCCCcEEEEEEecCCccCChHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEeCcChhhhhhhccCC-ceEEccc
Confidence 88775 689999999999986421 34566778888888888877674 33332 111 1100000011 1123344
Q ss_pred hh--------------hhccceeEEEEEEEEEEeCCeeEEEEecCCCC
Q 037610 271 RF--------------FAASAFTLYAQIIGKRVRGELREYWINDGKFG 304 (405)
Q Consensus 271 r~--------------lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~ 304 (405)
.| ...+|++++|+|+++... ..++.|.+.-
T Consensus 226 ~~i~~d~~~~~~~~~~~~~~a~~v~a~Vis~~~~----~~~i~d~G~~ 269 (353)
T cd06820 226 TYIFNDASQVALGACTLDDCALTVLATVVSRPTA----ERAVLDAGSK 269 (353)
T ss_pred cEEeecHHHHhcCCCChhheEEEEEEEEecccCC----CeEEECCccc
Confidence 32 235588999999987542 2345565443
No 44
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.89 E-value=1.9e-21 Score=192.61 Aligned_cols=239 Identities=16% Similarity=0.135 Sum_probs=170.8
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEc
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYA 124 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~ 124 (405)
+++| |+++||+++|++|++.+++.++ +.+++|++|||.++++++.+.+.|+ +|+|+|++|++.++++|++ .|++.
T Consensus 6 ~~~t-P~~~id~~~l~~Ni~~~~~~~~~~~~l~~~vKah~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~--~ill~ 82 (361)
T cd06821 6 EIIS-PALAVYPDRIEENIRRMIRMAGDPQRLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEAGAP--DVLLA 82 (361)
T ss_pred cCCC-ceEEEeHHHHHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHhcCCCcEEEecHHHHHHHHHcCCC--eEEEe
Confidence 5789 9999999999999999999887 5689999999999999999999999 9999999999999999996 45554
Q ss_pred CCC---CCHHHHHHHHHc---CCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChh-hH
Q 037610 125 NPC---KPVSHIKYAASV---GVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQ-EI 193 (405)
Q Consensus 125 gp~---k~~~~l~~a~~~---gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~-e~ 193 (405)
.|. +..+.++.+.+. .+ .++|||+++++.+.+.+ ...++.|||++++ +|||+ .++ ++
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~-~~~Vds~~~l~~l~~~a~~~~~~~~V~l~Vd~G~---------~R~Gv--~~~~~~ 150 (361)
T cd06821 83 YPLVGPNIERFLELAKKYPGTRF-SALVDDLEAAEALSAAAGSAGLTLSVLLDVNTGM---------NRTGI--APGEDA 150 (361)
T ss_pred CCCCHHHHHHHHHHHhhCCCCeE-EEEECCHHHHHHHHHHHHHcCCeEEEEEEeCCCC---------CcCCC--CChHHH
Confidence 332 222334444443 23 47999999999998754 3457788887653 79999 766 78
Q ss_pred HHHHHHHHH-cCCeEEEEEEecCCC-CCC----HHHHHHHHHHHHHHHHHHHhCCCCchhHH-H-HH-HH----HHhCC-
Q 037610 194 MPLLKAAEA-SGLSVVGVSFHVGSE-ATN----FAAFRGAIAAAKAVFDTAARTSNNKMRKL-F-KL-IF----RELLP- 259 (405)
Q Consensus 194 ~~~~~~~~~-~~l~l~Gih~H~gs~-~~~----~~~~~~~i~~~~~~~~~~~~~G~~~~~~l-i-~~-~l----~~~~~- 259 (405)
.++++.+++ +++++.|||+|.|+. ..+ .+.+.++++.+.++++.++..|+ ....+ + ++ .+ +..+.
T Consensus 151 ~~l~~~i~~~~~l~l~Gl~~~~gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~v~~GgS~~~~~~~~~~~~~ 229 (361)
T cd06821 151 EELYRAIATLPGLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAAGL-PVPELVAGGTPSFPFHAAYTDVE 229 (361)
T ss_pred HHHHHHHhhCCCceEeeEEeecCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCcchhhhccCCCcE
Confidence 899888766 689999999999874 233 34566788888888888877664 33322 0 11 01 11112
Q ss_pred -CCCcEEEECCc------hhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCC
Q 037610 260 -GSSLKVISEPG------RFFAASAFTLYAQIIGKRVRGELREYWINDGKFGS 305 (405)
Q Consensus 260 -~~~~~l~~EPG------r~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~ 305 (405)
++|.-++.... ..-..+|++++|+|+++-. ...++.|++.-.
T Consensus 230 vr~G~~l~gd~~~~~~~~~~~~~~al~v~s~Vis~~~----~~~~~~d~G~~~ 278 (361)
T cd06821 230 CSPGTFVLWDAGYGSKLPDLGFKPAALVVTRVISHPT----AGRVTLDLGHKA 278 (361)
T ss_pred ECCceEEEecHHHhhccCCCcCceeEEEEEEEEeecc----CCEEEECCcccc
Confidence 44544432211 0126889999999999743 224456665433
No 45
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region []. This entry represents the C-terminal region of the Orn/DAP/Arg decarboxylases.; GO: 0003824 catalytic activity; PDB: 1TWI_B 1TUF_A 3MT1_A 3N2B_C 2O0T_A 1HKW_A 1HKV_A 3VAB_A 3N2O_A 7ODC_A ....
Probab=99.86 E-value=1.1e-21 Score=162.66 Aligned_cols=106 Identities=42% Similarity=0.696 Sum_probs=82.6
Q ss_pred eEEEEEEEEEEeCC-------eeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeEEEeccCcCCCCe
Q 037610 279 TLYAQIIGKRVRGE-------LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDE 351 (405)
Q Consensus 279 ~l~t~V~~~k~~~~-------~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~ 351 (405)
+|+|+|+++|+.++ .+.+++++|+|+++.+.+++..++. .++.... .....++.|+||+|++.|+
T Consensus 1 ~Lvt~Vi~~k~~~~~~~~~~~~~~~~vd~G~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~i~GptC~~~D~ 72 (116)
T PF00278_consen 1 TLVTRVIGVKRRRDSDLKNKKRRWYYVDDGVYGSFDPWLYDHQFPI-LPLSRPD-------EEPCYPSTIWGPTCDSGDV 72 (116)
T ss_dssp EEEEEEEEEEEETT---HCTTEEEEEESS-TTTCCHHHHHS----E-EEESSTT-------TSTEEEEEEEESSSSTTSE
T ss_pred CEEEEEEEEEEcCCCccccceeeEEEEeCChhhChHHHhhCcCcee-eeecccc-------ccCcEEEEEEECCcCCCce
Confidence 58999999998764 4677788899999888888776643 2333211 3467899999999999999
Q ss_pred eecCCCCC-CCCCCCEEEEcCCCccccccCCCCCCCCCCCce
Q 037610 352 VFTGHKLP-ELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIP 392 (405)
Q Consensus 352 l~~~~~lp-~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~ 392 (405)
+.+++.|| ++++||||+|.++|||+++++++||++++|+++
T Consensus 73 i~~~~~lP~~l~~GD~l~f~~~GAYt~~~~~~Fn~~~~p~~v 114 (116)
T PF00278_consen 73 IARDVMLPKELEVGDWLVFENMGAYTISLSSNFNGFPRPAEV 114 (116)
T ss_dssp EEEEEEEESTTTTT-EEEESS-SSSSGGGSBCGGGT-SCEEE
T ss_pred EeeeccCCCCCCCCCEEEEecCcccchhhCccccCCCCCCEE
Confidence 99999999 999999999999999999999999999999863
No 46
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.81 E-value=2.2e-18 Score=169.74 Aligned_cols=228 Identities=18% Similarity=0.171 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHhC--CCCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHH
Q 037610 60 VVVSLYNHMISNL--PMIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYA 136 (405)
Q Consensus 60 ~l~~n~~~~~~~~--~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a 136 (405)
+|++|++.+++.+ +++++++++||+.++++++.+.+.|+ +|+|+|++|++.++++|+ .+|++.+|..++++++++
T Consensus 1 ~l~~Ni~~~~~~~~~~~~~l~~vvKah~~~~v~~~l~~~G~~~~~vat~~Ea~~l~~~G~--~~Ili~~~~~~~~~~~~~ 78 (345)
T cd07376 1 ALEANISRMAARARASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGV--KDILMAYPLVGPAAIARL 78 (345)
T ss_pred ChHHHHHHHHHHHHHcCCccccccchhcCHHHHHHHHhCCCCcEEEecHHHHHHHHHcCC--CeEEEECCcCCHHHHHHH
Confidence 4789999999887 37899999999999999999999999 999999999999999999 469998898767777776
Q ss_pred H---H--cCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHH---HHcC
Q 037610 137 A---S--VGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAA---EASG 204 (405)
Q Consensus 137 ~---~--~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~---~~~~ 204 (405)
. + .++ .++|||.++++.|.+.+ +..++.|+|++++ +|+|+ ++++...+.... +..+
T Consensus 79 ~~l~~~~~~i-~~~Vds~~~l~~l~~~a~~~~~~~~V~l~ID~G~---------~R~Gv--~~~~~~~l~~~~~i~~~~~ 146 (345)
T cd07376 79 AGLLRQEAEF-HVLVDSPEALAALAAFAAAHGVRLRVMLEVDVGG---------HRSGV--RPEEAAALALADAVQASPG 146 (345)
T ss_pred HHHHhcCCeE-EEEECCHHHHHHHHHHHHhcCCeeEEEEEeCCCC---------CcCCC--CCcHHHHHHHHHHhccCCC
Confidence 5 3 566 47999999999998754 3456777776543 89999 665543333322 2358
Q ss_pred CeEEEEEEecCCCC-CC-----HHHHHHHHHHHHHHHHHHHhCCCCchhHH--HHH-HHH-----HhCC--CCCcEEEE-
Q 037610 205 LSVVGVSFHVGSEA-TN-----FAAFRGAIAAAKAVFDTAARTSNNKMRKL--FKL-IFR-----ELLP--GSSLKVIS- 267 (405)
Q Consensus 205 l~l~Gih~H~gs~~-~~-----~~~~~~~i~~~~~~~~~~~~~G~~~~~~l--i~~-~l~-----~~~~--~~~~~l~~- 267 (405)
+++.|||+|+|+.. .+ .+.+.++++++.++++.++ .|+ ....+ -++ .+. ..++ ++|.-++.
T Consensus 147 l~l~Gl~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~-~~~~vs~G~S~~~~~~~~~~~~~~vR~G~~lyg~ 224 (345)
T cd07376 147 LRLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAE-RGL-ACPTVSGGGTPTYQLTAGDRAVTELRAGSYVFMD 224 (345)
T ss_pred eEEeEEEeecchhccCCCHHHHHHHHHHHHHHHHHHHHHHH-cCC-CCCEEEeCCCcChhhcccCCCCEEEcCceEEecc
Confidence 99999999999642 22 2245577777777777665 353 33222 111 111 1111 33333321
Q ss_pred ----CCchhhhccceeEEEEEEEEEEeCCeeEEEEecCCCCCC
Q 037610 268 ----EPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSL 306 (405)
Q Consensus 268 ----EPGr~lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~~~~ 306 (405)
..+..-..++..++|+|+++-.. +...+.|+++-++
T Consensus 225 ~~~~~~~~~~~~~~a~~~~~Vis~~~~---~~~~~~d~G~k~~ 264 (345)
T cd07376 225 TGFDTLGACAQRPAAFRVTTVISRPAP---TGRAVLDAGWKAS 264 (345)
T ss_pred hHHhhcccCCccceeEEEEEEEeccCC---CCeEEECCCcccc
Confidence 11111235677777999986531 2356667765544
No 47
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.81 E-value=3.6e-18 Score=169.73 Aligned_cols=226 Identities=18% Similarity=0.215 Sum_probs=163.7
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcC---CeEEEcCHHHHHHHHhCCCCCCc-
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLP--MIHPHYAVKCNPEPALLEALAALG---SNFDCGSRSEIEAVLLLDVSPDR- 120 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKaN~~~~vl~~l~~~G---~g~~vaS~~E~~~a~~~G~~~~~- 120 (405)
+..| |+.++|+++|++|++.+++..+ +.+++..+||...+++++.+.+.| .+|.|++++|++.+++.|+..+.
T Consensus 3 ~l~t-P~l~Idl~al~~Ni~~m~~~~~~~~~~l~phvKaHg~~~ia~~~~~~Ga~~~~~~Vatl~EA~~lr~~G~~~~I~ 81 (389)
T cd06817 3 DLPT-PALVIDRAKFKRNCERMLQRAKALGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEGRVD 81 (389)
T ss_pred CCCC-CeEEEEHHHHHHHHHHHHHHHHHcCCceeeeecCcCCHHHHHHHhhCCCCccCEEEecHHHHHHHHHhccccccc
Confidence 4568 9999999999999999998765 688999999999999999999998 48999999999999999997654
Q ss_pred -EEEcCCCCCHHHHHHHHHc----C-CcEEEecCHHHHHHHHhH-CC----CCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 037610 121 -IIYANPCKPVSHIKYAASV----G-VNLTTVDSVEELDKIRNW-HP----KSDLLIRIKSPDDSGAKYPLDSKYGAGHH 189 (405)
Q Consensus 121 -Ii~~gp~k~~~~l~~a~~~----g-v~~i~vds~~el~~i~~~-~~----~~~v~lRi~~~~~~~~~~~~~srfGi~~~ 189 (405)
|++..|. .++++++++++ + + .+.|||.++++.+.+. .. ..++.|.|++++ +|.|+ .
T Consensus 82 dilla~~~-~~~~~~~l~~l~~~~~~i-~~~Vds~~~l~~l~~~~a~~~g~~~~V~lkvDtGm---------~R~Gv--~ 148 (389)
T cd06817 82 DILYGLPV-PPSKLPRLAELSKKLGHL-RVMVDNPEQLDFLEQFQPLKSGKKWSVFIKVDCGT---------HRAGV--P 148 (389)
T ss_pred cEEEECCC-CHHHHHHHHHHHhhcCce-EEEECCHHHHHHHHHHHhhccCCceEEEEEEcCCC---------CcCCC--C
Confidence 6666575 67889998876 3 7 4899999999999876 43 345566665443 89999 5
Q ss_pred h--hhHHHHHHHHHH--cCCeEEEEEEecCCC--CCCHHHHH----HHHHHHHHHHHHHHh-CCCCchhHH---------
Q 037610 190 P--QEIMPLLKAAEA--SGLSVVGVSFHVGSE--ATNFAAFR----GAIAAAKAVFDTAAR-TSNNKMRKL--------- 249 (405)
Q Consensus 190 ~--~e~~~~~~~~~~--~~l~l~Gih~H~gs~--~~~~~~~~----~~i~~~~~~~~~~~~-~G~~~~~~l--------- 249 (405)
+ +++.++++.+.. .++++.|+++|+|+. ..+.+... +..+.+.++.+.++. .|+ +...+
T Consensus 149 ~~~~~~~~l~~~i~~~~~~L~l~Gi~tH~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~vs~GgTpt~~ 227 (389)
T cd06817 149 PESEDAKELIQKLEKASEAVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQGD-RKLTLSVGATPTAH 227 (389)
T ss_pred CChHHHHHHHHHHHhhCCCcEEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEeCCCcchh
Confidence 4 357778887765 589999999999974 23333322 344455556666665 664 32222
Q ss_pred HHHHHHHhCC--CCCcEEEECCchhhh--------------ccceeEEEEEEEEE
Q 037610 250 FKLIFRELLP--GSSLKVISEPGRFFA--------------ASAFTLYAQIIGKR 288 (405)
Q Consensus 250 i~~~l~~~~~--~~~~~l~~EPGr~lv--------------~~a~~l~t~V~~~k 288 (405)
+.+.+.. ++ .......+-||.|++ ..|..++|+|+++.
T Consensus 228 ~~~~~~~-~~~~~~~~~tel~pG~Yvf~D~~~~~~g~~~~~~~Al~VlatViS~~ 281 (389)
T cd06817 228 AAEALVL-IPAPSLSGLLELHAGNYPFYDLQQVATGLCSEEDIAVFVLAEVISVY 281 (389)
T ss_pred hhccccc-cccccCCcceEEccCccccccHHHHhhCCCCHHHeEEEEEEEEEecc
Confidence 1111110 00 111234567887643 45889999999974
No 48
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.79 E-value=3.9e-18 Score=169.15 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=125.1
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHH-HcCC-eEEEcCHHHHHHHHhCCCCCCcEEE
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNPEPALLEALA-ALGS-NFDCGSRSEIEAVLLLDVSPDRIIY 123 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~~~~vl~~l~-~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~ 123 (405)
+.+| |+.++|+++|++|++.+++..+ +.+++..+|||+...+++.+. +.|+ +|.|++..|++.+++.|... .|++
T Consensus 6 ~l~T-P~l~IDl~al~~Ni~~m~~~~~~g~~lrphvKa~ky~~~~~~~l~~~Ga~g~~vat~~Eae~l~~~~~~~-dILl 83 (379)
T cd06814 6 GIGE-PTLLLDKDRLDHNIDLLREHLAGSLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFPDA-DILL 83 (379)
T ss_pred CCCC-CEEEEEHHHHHHHHHHHHHhhCCCCcEEEEeccccCHHHHHHHHhhCCCCEEEEecHHHHHHHHhcCCCc-CeEE
Confidence 6789 9999999999999999998886 789999999999999999877 6898 99999999999988876544 5888
Q ss_pred cCCCCCHHHHHHH----------HHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 037610 124 ANPCKPVSHIKYA----------ASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHH 189 (405)
Q Consensus 124 ~gp~k~~~~l~~a----------~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~ 189 (405)
.+|. .++++.+. .++++ .++|||.++++.+.+.+ +..++.|.|++++ +|.|+ .
T Consensus 84 ~~p~-~~~~~~r~~~~l~~~~~~~~~~l-~~~Vds~e~l~~l~~~a~~~g~~l~V~lkVDtGm---------~R~Gv--~ 150 (379)
T cd06814 84 GKPM-PVAAAARFYRQLTGSAFRPARQL-QWLIDTPERLAQYRALARSLGLTLRINLELDVGL---------HRGGF--A 150 (379)
T ss_pred eCCC-CcHHHHHHHhhccccccchhcCE-EEEECCHHHHHHHHHHHHHcCCceEEEEEeCCCC---------CCCCC--C
Confidence 8775 34444333 24566 48999999999998754 3345666665543 89999 6
Q ss_pred hh-hHHHHHHHHHH-cCCeEEEEEEecCC
Q 037610 190 PQ-EIMPLLKAAEA-SGLSVVGVSFHVGS 216 (405)
Q Consensus 190 ~~-e~~~~~~~~~~-~~l~l~Gih~H~gs 216 (405)
++ ++.++++.+.. .++++.||++|-|.
T Consensus 151 ~~~~~~~l~~~i~~~~~l~~~Gi~ty~gh 179 (379)
T cd06814 151 DPQTLPKALTAIDAPPRLRFSGLMGYEPH 179 (379)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEEEEccc
Confidence 55 58888888765 58999999999987
No 49
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=99.75 E-value=3.8e-17 Score=150.43 Aligned_cols=202 Identities=15% Similarity=0.209 Sum_probs=150.7
Q ss_pred EeHHHHHHHHHHHHHhC-CCCceeeeeccCC-cHHHHHHHH-Hc-CC-eEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCH
Q 037610 56 MDLGVVVSLYNHMISNL-PMIHPHYAVKCNP-EPALLEALA-AL-GS-NFDCGSRSEIEAVLLLDVSPDRIIYANPCKPV 130 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~~-~~~~i~yavKaN~-~~~vl~~l~-~~-G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 130 (405)
+|+++|++|++.+++.. ++.+++.++|+|+ ...+.+.+. .. |+ +|.|+++.|+..+++.| .+|++.++ ..+
T Consensus 1 Idl~al~~Ni~~~~~~~~~~~~l~~vvK~~ayg~~~~~~~~~~~~g~~~~~va~~~Ea~~lr~~g---~~il~l~~-~~~ 76 (218)
T PF01168_consen 1 IDLDALRHNIRKIRQRAGPGTKLRAVVKANAYGHGIVRVAKALAEGIDGFAVATLEEAEELREAG---APILVLGP-IPP 76 (218)
T ss_dssp EEHHHHHHHHHHHHHHHCTTSEEEEE-HHHHHTTHHHHHHHHHHHTCSEEEESSHHHHHHHHHTT---SEEEEESE-STG
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEEEcCCCcCccHHHHHHHHhcCCCEEEEeeHHHhhhHHhcC---CceEEEcC-CCh
Confidence 69999999999999988 4567999999976 444555544 33 57 99999999999999999 45777777 568
Q ss_pred HHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH-cCC
Q 037610 131 SHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA-SGL 205 (405)
Q Consensus 131 ~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~-~~l 205 (405)
++++.++++++ .++|||.++++.|.+.. +..+++|.|++++ +|.|+ .++++.++++.++. +++
T Consensus 77 ~~~~~~~~~~~-~~~v~s~~~~~~l~~~~~~~~~~~~v~l~vdtG~---------~R~G~--~~~~~~~l~~~i~~~~~l 144 (218)
T PF01168_consen 77 EELEELVEYNI-IPTVDSLEQLEALSKAAKKQGKPLKVHLKVDTGM---------GRLGV--RPEELEELAEAIKALPNL 144 (218)
T ss_dssp GGHHHHHHTTE-EEEE-SHHHHHHHHHHHHHHTSTEEEEEEBESSS---------SSSSB--ECHHHHHHHHHHHHTTTE
T ss_pred hhHHHHhhCcE-EEEEchhhHHHHHHHHHHHcCCceEEEEeecccc---------cccCC--CHHHHHHHHHHHhcCCCc
Confidence 89999999887 58999999999998764 5788999998765 79999 78999999999876 689
Q ss_pred eEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCchhHH--HHH-HHHHhCCCCCcEEEECCchhhhc
Q 037610 206 SVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKL--FKL-IFRELLPGSSLKVISEPGRFFAA 275 (405)
Q Consensus 206 ~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~~~~~~l--i~~-~l~~~~~~~~~~l~~EPGr~lv~ 275 (405)
++.|+++|+++.......-.++++++.++.+.+++.|+ +...+ -++ .+..+-..++.. .+.||.++..
T Consensus 145 ~l~Gl~th~~~~d~~~~~~~~q~~~~~~~~~~l~~~~~-~~~~~s~g~S~~~~~~~~~~~~~-~vR~G~~lyG 215 (218)
T PF01168_consen 145 RLEGLMTHFAHADDPDYTNQEQFERFRELAEALEKAGI-PPPIVSMGNSAAFLLAPAHEGIT-MVRPGIALYG 215 (218)
T ss_dssp EEEEEEEBGSSTTSSCHHHHHHHHHHHHHHHHHHHTTT-TCSEEEEEBHHHHHHHGGTTTTS-EEEESGGGGT
T ss_pred eEeeEeccccccCCHHHHHHHHHHHHHHHHHHHHhccC-CCceecCCCCcchhhcccccCCc-EEEechhhhC
Confidence 99999999998742222233489999999999987764 33322 122 111111022333 3778887764
No 50
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=99.75 E-value=1.1e-16 Score=147.96 Aligned_cols=180 Identities=18% Similarity=0.206 Sum_probs=142.4
Q ss_pred EeHHHHHHHHHHHHHhC---C-CCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCC-CCcEEEcCCCCC
Q 037610 56 MDLGVVVSLYNHMISNL---P-MIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEAVLLLDVS-PDRIIYANPCKP 129 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~~---~-~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~-~~~Ii~~gp~k~ 129 (405)
-|++++++|++.+++.. + +++++.++|++....+.+. .+.|+ +|.|++++|+..+++++.. .-.+++.|+. .
T Consensus 3 ~~~~~l~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~-~~~G~~~f~va~l~Ea~~lr~~~~~~~~~~~llg~~-~ 80 (222)
T cd00635 3 ENLEEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREA-IEAGQRDFGENRVQEALDKAEELPDPDIEWHFIGHL-Q 80 (222)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHH-HHcCCcccCCCcHHHHHHHHHHccCCCceEEEECcc-c
Confidence 47889999999999887 4 6899999999998888876 47898 9999999999999998543 2234454653 5
Q ss_pred HHHHHHHHH-cCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH-c
Q 037610 130 VSHIKYAAS-VGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA-S 203 (405)
Q Consensus 130 ~~~l~~a~~-~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~-~ 203 (405)
+++++.+++ .++ .+++||+++++.|.+.+ +..+++|||++++. .+|||+ +++++.++++.++. +
T Consensus 81 ~~~~~~~~~~~~~-~~~v~s~~~l~~l~~~a~~~~~~~~v~lkvdtG~~-------~~R~G~--~~~~~~~~~~~i~~~~ 150 (222)
T cd00635 81 TNKVKYAVRLFDL-IHSVDSLKLAEELNKRAEKEGRVLDVLVQVNIGGE-------ESKSGV--APEELEELLEEIAALP 150 (222)
T ss_pred cccHHHHHhhCCE-EEEcCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-------CCCCCC--CHHHHHHHHHHHHcCC
Confidence 678899988 587 48999999999888653 45789999997642 289999 88999999988766 5
Q ss_pred CCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhC-CCCchhHH
Q 037610 204 GLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAART-SNNKMRKL 249 (405)
Q Consensus 204 ~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~-G~~~~~~l 249 (405)
++++.|+|+|.++ ..+.+.+.++.+.+.++.+.+++. |+ .++++
T Consensus 151 ~l~~~Gi~sh~s~-~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~i 195 (222)
T cd00635 151 NLRIRGLMTIAPL-TEDPEEVRPYFRELRELRDELGAKGGV-NLKEL 195 (222)
T ss_pred CCcEEEEEEECCC-CCChHHHHHHHHHHHHHHHHHHHhcCC-CCCEE
Confidence 8999999999655 456677888888888888877654 34 44443
No 51
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=99.58 E-value=1.5e-13 Score=127.09 Aligned_cols=170 Identities=19% Similarity=0.243 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHhC---C-CCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHH----HHhCC-CCCCcEEEcCCCC
Q 037610 59 GVVVSLYNHMISNL---P-MIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEA----VLLLD-VSPDRIIYANPCK 128 (405)
Q Consensus 59 ~~l~~n~~~~~~~~---~-~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~----a~~~G-~~~~~Ii~~gp~k 128 (405)
+.|.++++...... | .++++.++||.....|.+.+ +.|+ +|.|++++|+.. ++++| +. ..+.|+.-
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~i~aVvKahG~~~v~~~~-~~G~~~fgva~~~Ea~~k~~~Lr~~g~~~---~~~lg~~~ 82 (224)
T cd06824 7 AQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAY-AAGQRHFGENYVQEALEKIEALRDLQDIE---WHFIGPIQ 82 (224)
T ss_pred HHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHH-HcCCcccCcChHHHHHHHHHHhccCCCee---EEEEcCch
Confidence 44555555433332 2 37899999999999999996 7898 999999999996 78776 31 22447753
Q ss_pred CHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH-c
Q 037610 129 PVSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA-S 203 (405)
Q Consensus 129 ~~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~-~ 203 (405)
..++.+.+.++++ ..+|||.++++.+.+.+ ...+++|.|+++.+. +|||+ +++++.++++.+.. +
T Consensus 83 ~~~~~~~~~~~~~-~~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~~~Gm-------~R~Gi--~~~~~~~~~~~i~~~~ 152 (224)
T cd06824 83 SNKTKLIAENFDW-VHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISGED-------SKSGV--APEDAAELAEAISQLP 152 (224)
T ss_pred hhhHHHHHhhCCE-EEecCCHHHHHHHHHHHHhcCCCCcEEEEEEcCCCC-------CCCCC--CHHHHHHHHHHHhcCC
Confidence 3355777788998 48999999999998754 235677788764322 89999 88888888888765 5
Q ss_pred CCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 037610 204 GLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSN 243 (405)
Q Consensus 204 ~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~ 243 (405)
++++.|||+|+++. .+.....+.++.+.++.+.++..|+
T Consensus 153 ~l~l~Gl~tH~a~~-~~~~~q~~~f~~~~~~~~~l~~~~~ 191 (224)
T cd06824 153 NLRLRGLMAIPAPT-DDEAAQRAAFKRLRQLFDQLKKQYP 191 (224)
T ss_pred CCcEEEEEEeCCCC-CChHHHHHHHHHHHHHHHHHHhhCC
Confidence 89999999997764 3333322333333333455554453
No 52
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=99.52 E-value=1.8e-12 Score=120.19 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=119.2
Q ss_pred CCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHH----HHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecC
Q 037610 74 MIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEA----VLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDS 148 (405)
Q Consensus 74 ~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~----a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds 148 (405)
+++++.++|+++...+.+ +.+.|+ .|.++++.|+.. +++.| . .++++.||..+......+..+++ ..++||
T Consensus 28 ~~~l~aV~K~~~~~~i~~-l~~~G~~~fg~~~~~Ea~~k~~~lr~~~-~-~~~~~ig~~q~~~~~~~~~~~~l-~~~vds 103 (229)
T TIGR00044 28 KVKLLAVSKTKPASAIQI-AYDAGQRAFGENYVQELVEKIKLLEDLG-K-LEWHFIGPLQSNKDRLVVENFDW-VHTIDS 103 (229)
T ss_pred CeEEEEEECCCCHHHHHH-HHHcCCccccEEcHHHHHHHHHHhcccC-C-ceEEEECCCcchHHHHHhhhcCE-EEEECC
Confidence 588999999999555555 888998 999999999976 55555 3 46888998766777667778887 489999
Q ss_pred HHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH-cCCeEEEEEEecCCCCCCHHH
Q 037610 149 VEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA-SGLSVVGVSFHVGSEATNFAA 223 (405)
Q Consensus 149 ~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~-~~l~l~Gih~H~gs~~~~~~~ 223 (405)
.+.++.|.+.+ +..+++|.|+++.+. +|.|+ .++++.++++.+.. +++++.|+++|++.. .+.+.
T Consensus 104 ~~~~~~l~~~a~~~~~~~~V~l~vdtg~gm-------~R~G~--~~~e~~~~~~~i~~~~~l~l~Gl~th~~~~-~~~~~ 173 (229)
T TIGR00044 104 LKIAKKLNEQREKLQPPLNVLLQINISDEE-------SKSGI--QPEELLELAIQIEELKHLKLRGLMTIGAPT-DSHED 173 (229)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEECCCCC-------CCCCC--CHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-CCHHH
Confidence 99999998753 346888888874221 89999 88888888888776 589999999999985 34455
Q ss_pred HHHHHHHHHHHHHHHHhCC
Q 037610 224 FRGAIAAAKAVFDTAARTS 242 (405)
Q Consensus 224 ~~~~i~~~~~~~~~~~~~G 242 (405)
..+..+.+.++.+.+...|
T Consensus 174 ~~~~~~~~~~~~~~l~~~~ 192 (229)
T TIGR00044 174 QEENFRFMKLLFWQIKQDS 192 (229)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4555666666666665533
No 53
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.41 E-value=7e-12 Score=121.97 Aligned_cols=162 Identities=23% Similarity=0.286 Sum_probs=128.2
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEE
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIY 123 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~ 123 (405)
+..| |+.++|++++.+|+.++++... ++++...+|+...+++.+...+.|. |+-|+++.|++....+|| ++|++
T Consensus 15 ~l~t-P~~liD~dr~~~Ni~r~qa~~~~~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~aGi--~dIl~ 91 (368)
T COG3616 15 DLDT-PAALIDLDRLDGNIDRMQARADDHGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADAGI--DDILL 91 (368)
T ss_pred CCCC-chhhhhHHHHhhhHHHHHHhccccCceeecccccccCHHHHHHHHhcCCceeEeechHHHHHHHccCc--cceEE
Confidence 6789 9999999999999999998885 7899999999999999999999998 999999999999999998 57999
Q ss_pred cCCCCCHHHHHHHHHc--CCc--EEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHH
Q 037610 124 ANPCKPVSHIKYAASV--GVN--LTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKA 199 (405)
Q Consensus 124 ~gp~k~~~~l~~a~~~--gv~--~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~ 199 (405)
..|......++...+. ... .+.+||.++++.+.+...+....+|+..+.+.| ..|.|+. +++....+.+.
T Consensus 92 a~p~~~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~pl~v~iE~D~G-----~~R~Gv~-t~~~~~~La~~ 165 (368)
T COG3616 92 AYPLPGRAALAALAELLADPPRISVLIDSVEQLDALAALARDAGKPLRVLIEIDSG-----LHRSGVR-TPEVAEALAAE 165 (368)
T ss_pred ecCCCchhHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHHhcCCCeeEEEEeCCC-----CCccCcC-ChHHHHHHHHh
Confidence 9876655555544332 222 367999999999998876666667777544432 2899993 33444444444
Q ss_pred HH-HcCCeEEEEEEecCCC
Q 037610 200 AE-ASGLSVVGVSFHVGSE 217 (405)
Q Consensus 200 ~~-~~~l~l~Gih~H~gs~ 217 (405)
+. ..++.+.|+++|-|..
T Consensus 166 ~~~~~~l~~~Gv~~y~gh~ 184 (368)
T COG3616 166 IAAAPGLRLAGVMTYPGHS 184 (368)
T ss_pred hhhccceEEeeeecccccc
Confidence 43 3689999999999764
No 54
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.40 E-value=1.3e-11 Score=114.90 Aligned_cols=293 Identities=14% Similarity=0.140 Sum_probs=183.6
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCC-cHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEcCCC
Q 037610 52 PFYLMDLGVVVSLYNHMISNLP--MIHPHYAVKCNP-EPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYANPC 127 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKaN~-~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~ 127 (405)
|-.++|++.|++|.+.+++.+. ++++++..|.-. ++.+++.+.+.|+ ++.-+-.+|+...+++|++.+--++-.|+
T Consensus 4 p~l~Idl~~ieeNak~~~~~a~~~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~~Llr~P~ 83 (353)
T COG3457 4 PGLIIDLDKIEENAKVLQETAARYGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPGHLLRSPC 83 (353)
T ss_pred CcEEEeHHHHHHhHHHHHHHHHHcCCEEEEEEeeccCChHHHHHHHhcCcceeeehhHHHHHHHHHcCCCcCceEeeccc
Confidence 7889999999999999998774 899999999965 9999999999999 78888889999999999987756666787
Q ss_pred CCHHHHHHHHHcCCcEEEecCHHHHHHHHhH----CCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH-
Q 037610 128 KPVSHIKYAASVGVNLTTVDSVEELDKIRNW----HPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA- 202 (405)
Q Consensus 128 k~~~~l~~a~~~gv~~i~vds~~el~~i~~~----~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~- 202 (405)
.++++..++. +.++++.+++-++++++. ++..+++|+|..+.- .. +.+|+ ..+++++.++.+..
T Consensus 84 --~sei~~vv~~-~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~Dl-----re-G~~~~--~~~~l~~~V~eI~~l 152 (353)
T COG3457 84 --MSEIEDVVRK-VDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYGDL-----RE-GQWGF--LIEDLEETVEEIQQL 152 (353)
T ss_pred --HHHHHHHHHh-cCeEEEecHHHHHHHHHHHHHhCcceeEEEEEEcccc-----cC-cchhh--HHHHHHHHHHHHhcC
Confidence 4688888764 446788889999888875 577899999986541 11 22223 34778888887766
Q ss_pred cCCeEEEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHhC-CCCchhHH---HHHHHHHh-CC-CCCcEEEECCchh-
Q 037610 203 SGLSVVGVSFHVGSEA---TNFAAFRGAIAAAKAVFDTAART-SNNKMRKL---FKLIFREL-LP-GSSLKVISEPGRF- 272 (405)
Q Consensus 203 ~~l~l~Gih~H~gs~~---~~~~~~~~~i~~~~~~~~~~~~~-G~~~~~~l---i~~~l~~~-~~-~~~~~l~~EPGr~- 272 (405)
+|+++.||-+|+++-. ..++.+ ..+.+..+.+++. |+ .++.+ -.+.+... .+ -+++ --.|||..
T Consensus 153 kGi~~vGlgTnF~Cfg~v~PTp~n~----~~ll~~~~~lE~~~Gi-~l~~vsagnats~~~L~~~~~~~i-nhlriG~al 226 (353)
T COG3457 153 KGIHLVGLGTNFPCFGDVLPTPENL----ESLLQGKKKLEASSGI-QLKQVSAGNATSLTLLPMGSLPGI-NHLRIGEAL 226 (353)
T ss_pred CCceEEeeecccccccCcCCCcccH----HHHHHHHHHHHHhcCc-eeEEecCCCccchhhhhccccccc-cccccccee
Confidence 5999999999998842 222222 2233333444433 64 44443 00111110 00 1120 02344433
Q ss_pred -------------hhccceeEEEEEEEEEEeCCeeEEEEecCCC--CCChhhhhhccccccccCCCCCCCCccC-CCCce
Q 037610 273 -------------FAASAFTLYAQIIGKRVRGELREYWINDGKF--GSLAWVTCDEAIAKCTPLPFASSFTTSK-GLTRT 336 (405)
Q Consensus 273 -------------lv~~a~~l~t~V~~~k~~~~~~~~~i~dg~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 336 (405)
+-.+|+.|.+.|+.+|... +|-+-.+-| ..|...+.. ......-...++... ..+-.
T Consensus 227 ~~g~~~~n~~~~~~e~da~~lesEIie~k~k~---s~~ige~f~~~~~f~d~g~~----~rAi~aig~~dv~~~~~spiD 299 (353)
T COG3457 227 TGGVTPTNQYIDWLEQDAMLLESEIIEVKDKP---SYPIGEGFYRRSGFVDAGIR----LRAIAAIGEQDVDVVNLSPID 299 (353)
T ss_pred ecccccchhcccccccchhhhhhhhhhccCCC---ceeecccccccccccccchh----HHHHHHhhhhcCCcCCCccHh
Confidence 3356999999999988753 333222211 111111100 000000000000000 01122
Q ss_pred eeEEEeccCcCCCCeeecCCCC-CCCCCCCEEEEcC
Q 037610 337 YNSTVFGPTCDAFDEVFTGHKL-PELEVNDWLVFSE 371 (405)
Q Consensus 337 ~~~~v~G~~C~~~D~l~~~~~l-p~l~~GD~l~~~~ 371 (405)
+..++.|.+ +|.+..++.. -.+++||.+.|..
T Consensus 300 ~~i~ilgas---SDhvvld~~~q~~v~vgDvv~fr~ 332 (353)
T COG3457 300 YGIDILGAS---SDHVVLDFRDQIFVTVGDVVRFRL 332 (353)
T ss_pred hhhhhhccc---CCcEEEEecccccceeeeEEEEEe
Confidence 346788876 5888877752 3799999998876
No 55
>PF00842 Ala_racemase_C: Alanine racemase, C-terminal domain; InterPro: IPR011079 Alanine racemase (5.1.1.1 from EC) plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins contains this domain are found in both prokaryotic and eukaryotic proteins [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus (Geobacillus stearothermophilus) was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strand. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel.; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process; PDB: 3HUR_A 4A3Q_B 3S46_A 1RCQ_A 3CO8_A 1VFT_B 1VFH_A 1VFS_B 2DY3_B 4ECL_C ....
Probab=98.37 E-value=3.4e-07 Score=76.93 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=58.4
Q ss_pred ceeEEEEEEEEEEeCC------eeEEEEecCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeEEEeccCcCCCC
Q 037610 277 AFTLYAQIIGKRVRGE------LREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFD 350 (405)
Q Consensus 277 a~~l~t~V~~~k~~~~------~~~~~i~dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~~C~~~D 350 (405)
+++|.++|+.+|.... +..|.....+..+..+++|.++. ++.+++... + ..++++++|+|++|| |
T Consensus 1 v~sl~a~i~~v~~v~~G~~VgYg~~~~a~~~~~iavv~iGYaDG~--~r~~~~~~~-v----~i~G~~~pivG~v~M--D 71 (129)
T PF00842_consen 1 VMSLKARIIQVREVPKGETVGYGRTYRAPRDTRIAVVPIGYADGF--PRALSNGGY-V----LINGKRCPIVGRVCM--D 71 (129)
T ss_dssp -EEEEEEEEEEEEE-TT-EESGGGSEE-SSSEEEEEES--GGGTG--GGGGTTTEE-E----EETTEEEEEES---S--S
T ss_pred CEEEEEEEEEEEEeCCCCCCcCCCEEECCCCeEEEEEEEEeeCCc--CcccCCCcE-E----EECCEEEEEEEEEEe--e
Confidence 5789999999998632 35677776666677788997776 366766433 3 468899999999999 9
Q ss_pred eeecCCC-C-CCCCCCCEEEEcCCC
Q 037610 351 EVFTGHK-L-PELEVNDWLVFSEMG 373 (405)
Q Consensus 351 ~l~~~~~-l-p~l~~GD~l~~~~~G 373 (405)
+++.|+. . |++++||.+++.+..
T Consensus 72 ~~~vdvt~~~~~v~~GD~V~l~G~~ 96 (129)
T PF00842_consen 72 MTMVDVTDIEPDVKVGDEVTLFGRQ 96 (129)
T ss_dssp -EEEEESTSTST--TT-EEEEEECE
T ss_pred EEEEEcCCCCCCCCCCCEEEEECCC
Confidence 9999886 5 689999999988743
No 56
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=98.29 E-value=0.00021 Score=66.04 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHhC--CCCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCC-cEEEcCCCCCHHHH
Q 037610 58 LGVVVSLYNHMISNL--PMIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPD-RIIYANPCKPVSHI 133 (405)
Q Consensus 58 ~~~l~~n~~~~~~~~--~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~-~Ii~~gp~k~~~~l 133 (405)
++.|++++++....- ..+++..+.|.-+...|. .+.++|. .|.=.-..|+..=.+. ++.+ +-.|-|+. ..+-+
T Consensus 5 l~~i~~~i~~a~~~r~~~~v~LvaVsK~~~~~~i~-~~~~~G~~~fGENrvQe~~~K~~~-l~~~i~wHfIG~L-Q~NK~ 81 (227)
T cd06822 5 LKRIRQAVKRASKKLPASKPRLVAVSKTKPAELIK-EAYDAGQRHFGENYVQELIEKAPD-LPIDIKWHFIGHL-QSNKV 81 (227)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEECCCCHHHHH-HHHHcCCccccCcHHHHHHHHHHh-ccCCceEEEECCC-chhhH
Confidence 344555554433221 258999999999876655 4667788 7888888887542221 2222 24677885 56678
Q ss_pred HHHHH-cCCc-EEEecCHHHHHHHHhH------CCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHH-H-c
Q 037610 134 KYAAS-VGVN-LTTVDSVEELDKIRNW------HPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAE-A-S 203 (405)
Q Consensus 134 ~~a~~-~gv~-~i~vds~~el~~i~~~------~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~-~-~ 203 (405)
+.+++ ..+. +=+|||++-++.|.+. .+..+++|.||.+.+. +|.|+ +++++.++++.+. . +
T Consensus 82 k~i~~~~~~~~ihsvDs~~la~~L~~~a~~~~~~~~~~VlIqVn~g~e~-------~K~Gv--~~~e~~~l~~~i~~~~~ 152 (227)
T cd06822 82 KKLLKVPNLYMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTSGEE-------SKSGL--EPSEAVELVKHIIEECP 152 (227)
T ss_pred HHHhccccccEEEecCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-------CCCCC--CHHHHHHHHHHHHhhCC
Confidence 88864 2232 3589999999998874 3457899999976543 89999 8899999999885 6 6
Q ss_pred CCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhC-CC
Q 037610 204 GLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAART-SN 243 (405)
Q Consensus 204 ~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~-G~ 243 (405)
++++.||++|.+......+.-...++.+.++.+.++.. |+
T Consensus 153 ~L~l~GLMt~~~~~~~~~~~~r~~f~~l~~l~~~L~~~~g~ 193 (227)
T cd06822 153 NLKFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGI 193 (227)
T ss_pred CceEEEEEeeCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999874321233345666666777766654 53
No 57
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=97.77 E-value=0.0052 Score=55.94 Aligned_cols=171 Identities=13% Similarity=0.144 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHhCC----CCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCC---cEEEcCCCCC
Q 037610 58 LGVVVSLYNHMISNLP----MIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPD---RIIYANPCKP 129 (405)
Q Consensus 58 ~~~l~~n~~~~~~~~~----~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~---~Ii~~gp~k~ 129 (405)
+..+++++++-..... .+++..+-|+-+... ++.+.+.|+ -|.=.=..|+..=.++ ++.. .-.|-||. .
T Consensus 7 l~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~~-I~~~~~aG~r~fGENrvQe~~~K~~~-l~~~~~i~WHfIG~L-Q 83 (228)
T COG0325 7 LAAVRERIAAAAERAGRNPGSVTLVAVSKTVPAED-IREAYEAGQRHFGENRVQEALDKIEA-LKDLPDIEWHFIGPL-Q 83 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCHHH-HHHHHHcCChhhcchHHHHHHHHHHh-cCcCCCeEEEEechh-h
Confidence 4455555555444332 488999999988654 567888898 7888878887653333 3322 35677986 4
Q ss_pred HHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH-cC
Q 037610 130 VSHIKYAASVGVNLTTVDSVEELDKIRNWH----PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA-SG 204 (405)
Q Consensus 130 ~~~l~~a~~~gv~~i~vds~~el~~i~~~~----~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~-~~ 204 (405)
..-.+.++++=-.+=++|++.-+++|.+.+ +..++.|.||.+.+. ||-|+ +++++.++++.++. ++
T Consensus 84 sNK~k~v~~~~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi~~E~-------sK~G~--~~~e~~~~~~~~~~~~~ 154 (228)
T COG0325 84 SNKVKLVAENFDWIHSLDRLKLAKELNKRALELPKPLNVLIQVNISGEE-------SKSGV--PPEELDELAQEVQELPN 154 (228)
T ss_pred hhHHHHHHhhcceeeecCHHHHHHHHHHHHHhCCCCceEEEEEecCCcc-------ccCCC--CHHHHHHHHHHHHhCCC
Confidence 566777777422234888888888886643 257899999975432 89999 99999999999876 69
Q ss_pred CeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhC
Q 037610 205 LSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAART 241 (405)
Q Consensus 205 l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~ 241 (405)
+++.||++=..- ..|++.....++...++++.+...
T Consensus 155 L~l~GLM~ipp~-~~d~~~~~~~F~~l~~l~~~l~~~ 190 (228)
T COG0325 155 LELRGLMTIPPL-TDDPEEIFAVFRKLRKLFDELKAK 190 (228)
T ss_pred CeEeEEEeeCCC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999986544 346666666777777777766544
No 58
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=95.32 E-value=0.48 Score=42.47 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhC-------CCCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEE--EcCCCCC
Q 037610 60 VVVSLYNHMISNL-------PMIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRII--YANPCKP 129 (405)
Q Consensus 60 ~l~~n~~~~~~~~-------~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii--~~gp~k~ 129 (405)
+|+.-+.+++++. +.+++..+-|+-|... +..+.+.|- .|.=.-..|+..=... ++ +.|- |-|..-
T Consensus 10 ~L~~v~~rv~qa~~~~~r~~~~~rlvaVSKtKPa~~-i~~~Y~~GqR~FGENYVQEl~eKap~-lp-~DI~WHFIG~lQ- 85 (244)
T KOG3157|consen 10 ALRAVIERVQQAVNQRPRDENAVRLVAVSKTKPASL-IIEAYDAGQRHFGENYVQELIEKAPL-LP-DDIKWHFIGHLQ- 85 (244)
T ss_pred HHHHHHHHHHHHHHhccccccceEEEEeecCCcHHH-HHHHHHcCcChhhHHHHHHHHHhccc-Cc-ccceeeeechhh-
Confidence 4544455554432 2588889999988654 555777776 6766666666532221 33 3343 556543
Q ss_pred HHHHHHHHH-cCCcE-EEecCHHHHHHHHhH----CC--CCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHH
Q 037610 130 VSHIKYAAS-VGVNL-TTVDSVEELDKIRNW----HP--KSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAE 201 (405)
Q Consensus 130 ~~~l~~a~~-~gv~~-i~vds~~el~~i~~~----~~--~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~ 201 (405)
...+...+. .+... -+|||+--.+++.+. .+ ..++.+.||+.-. .+|+|+ .+.++.++++.++
T Consensus 86 snK~kkl~svpnL~~vetVDseK~A~~ld~a~~k~g~~~PL~V~VQvNTSGE-------d~K~Gi--epse~~~l~~~i~ 156 (244)
T KOG3157|consen 86 SNKCKKLLSVPNLYSVETVDSEKKARKLDSAWSKLGPDNPLKVLVQVNTSGE-------DSKSGI--EPSEAPELAEHIK 156 (244)
T ss_pred hcccchhccCCceEEEEecchHHHHHHHHHHHHhcCCCCCeEEEEEeecCCc-------cccCCC--ChhhhHHHHHHHH
Confidence 233333333 33322 358888777777653 44 5678888886432 389999 9999999999987
Q ss_pred H--cCCeEEEEEE
Q 037610 202 A--SGLSVVGVSF 212 (405)
Q Consensus 202 ~--~~l~l~Gih~ 212 (405)
. .++++.||++
T Consensus 157 ~~c~nL~f~GlMT 169 (244)
T KOG3157|consen 157 SECKNLKFSGLMT 169 (244)
T ss_pred HhCCcceeeeeEE
Confidence 6 4999999976
No 59
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=91.63 E-value=6 Score=37.41 Aligned_cols=56 Identities=20% Similarity=0.212 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCC-eEEEcC----HHHHH---HHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEE
Q 037610 87 PALLEALAALGS-NFDCGS----RSEIE---AVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLT 144 (405)
Q Consensus 87 ~~vl~~l~~~G~-g~~vaS----~~E~~---~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i 144 (405)
.++++.|.+.|+ .+||.| ..+.+ .+.+.+.. .++.... .-..++++.|.+.|+..+
T Consensus 25 ~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~-~~v~~~~-r~~~~di~~a~~~g~~~i 88 (262)
T cd07948 25 IEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKLGLK-AKILTHI-RCHMDDARIAVETGVDGV 88 (262)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCC-CcEEEEe-cCCHHHHHHHHHcCcCEE
Confidence 456666666666 566632 22222 12222332 2232211 223556666666665533
No 60
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=86.63 E-value=13 Score=34.56 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=76.0
Q ss_pred cEEEEeHHHHHHHHHHHHHh-CCCCceeeeecc------CCcHHHHHHHHHcC--CeE--EEcC-HHHHHHHHhCCCCCC
Q 037610 52 PFYLMDLGVVVSLYNHMISN-LPMIHPHYAVKC------NPEPALLEALAALG--SNF--DCGS-RSEIEAVLLLDVSPD 119 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~-~~~~~i~yavKa------N~~~~vl~~l~~~G--~g~--~vaS-~~E~~~a~~~G~~~~ 119 (405)
+...++.+...+-++.+.+. .+.+++.+.... .....+++.+.+.+ ..+ -+.. ..+++.+.++|++.=
T Consensus 12 ~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i 91 (265)
T cd03174 12 EGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEV 91 (265)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEE
Confidence 44445667666666666543 222333333322 33456777777765 322 2222 777888888886432
Q ss_pred cEEEcCC--------CCC--------HHHHHHHHHcCCcE-EEe-------cCHHHHHHHHhHCCCCe-EEEEEecCCCC
Q 037610 120 RIIYANP--------CKP--------VSHIKYAASVGVNL-TTV-------DSVEELDKIRNWHPKSD-LLIRIKSPDDS 174 (405)
Q Consensus 120 ~Ii~~gp--------~k~--------~~~l~~a~~~gv~~-i~v-------ds~~el~~i~~~~~~~~-v~lRi~~~~~~ 174 (405)
+|.+.+. .++ .+.++.+.+.|+.+ +++ .+.+++..+.+...+.. -.+++..
T Consensus 92 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~D---- 167 (265)
T cd03174 92 RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKD---- 167 (265)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEech----
Confidence 3333322 011 12333444566541 233 44455554444322111 1233321
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHHc-CCeEEEEEEecCC
Q 037610 175 GAKYPLDSKYGAGHHPQEIMPLLKAAEAS-GLSVVGVSFHVGS 216 (405)
Q Consensus 175 ~~~~~~~srfGi~~~~~e~~~~~~~~~~~-~l~l~Gih~H~gs 216 (405)
-.|.- .++++.++++.+++. .-...|+|+|---
T Consensus 168 --------t~G~~-~P~~v~~li~~l~~~~~~~~~~~H~Hn~~ 201 (265)
T cd03174 168 --------TVGLA-TPEEVAELVKALREALPDVPLGLHTHNTL 201 (265)
T ss_pred --------hcCCc-CHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 13432 788888888887663 2135677877543
No 61
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=86.56 E-value=28 Score=32.70 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=15.1
Q ss_pred ChhhHHHHHHHHHHc-CCeEEEEEEecC
Q 037610 189 HPQEIMPLLKAAEAS-GLSVVGVSFHVG 215 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~l~l~Gih~H~g 215 (405)
.++++.++++.+++. .+ -.|+|+|--
T Consensus 166 ~P~~v~~lv~~l~~~~~~-~l~~H~Hn~ 192 (259)
T cd07939 166 DPFTTYELIRRLRAATDL-PLEFHAHND 192 (259)
T ss_pred CHHHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 566666666665542 33 356666643
No 62
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=84.49 E-value=18 Score=33.17 Aligned_cols=82 Identities=20% Similarity=0.234 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEc--CCCCCHHHHHHHHHcCCcEEEec---CHHHHHHHHhHCC
Q 037610 87 PALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYA--NPCKPVSHIKYAASVGVNLTTVD---SVEELDKIRNWHP 160 (405)
Q Consensus 87 ~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~--gp~k~~~~l~~a~~~gv~~i~vd---s~~el~~i~~~~~ 160 (405)
...++.+.+.|+ |+-|++++.+..+++.|.+-+ |+.. -...+...++...+.|+..+++. |++|++.|.+..+
T Consensus 5 ~~~l~~l~~~g~dgi~v~~~g~~~~~k~~~~~~~-i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~~~~ 83 (233)
T PF01136_consen 5 EKYLDKLKELGVDGILVSNPGLLELLKELGPDLK-IIADYSLNVFNSESARFLKELGASRITLSPELSLEEIKEIAENSP 83 (233)
T ss_pred HHHHHHHHhCCCCEEEEcCHHHHHHHHHhCCCCc-EEEecCccCCCHHHHHHHHHcCCCEEEECccCCHHHHHHHHHhCC
Confidence 467788899999 999999999999999965443 4433 33567889999999999877776 5666666666554
Q ss_pred CCeEEEEEe
Q 037610 161 KSDLLIRIK 169 (405)
Q Consensus 161 ~~~v~lRi~ 169 (405)
..++-+-|+
T Consensus 84 ~~~~Ev~v~ 92 (233)
T PF01136_consen 84 GVPLEVIVH 92 (233)
T ss_pred CCeEEEEEe
Confidence 445555555
No 63
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=83.11 E-value=28 Score=32.83 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=11.1
Q ss_pred cHHHHHHHHHcCC-eEEEc
Q 037610 86 EPALLEALAALGS-NFDCG 103 (405)
Q Consensus 86 ~~~vl~~l~~~G~-g~~va 103 (405)
-..+++.|.+.|+ .+||.
T Consensus 22 k~~i~~~L~~~Gv~~iEvg 40 (268)
T cd07940 22 KLEIARQLDELGVDVIEAG 40 (268)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 3466666666676 56664
No 64
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=82.80 E-value=45 Score=33.09 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=21.0
Q ss_pred CCCCCCChhhHHHHHHHHHHc-CCeEEEEEEecCCC
Q 037610 183 KYGAGHHPQEIMPLLKAAEAS-GLSVVGVSFHVGSE 217 (405)
Q Consensus 183 rfGi~~~~~e~~~~~~~~~~~-~l~l~Gih~H~gs~ 217 (405)
..|.- .++++.++++.+++. .+ ..|+|+|--.+
T Consensus 163 T~G~~-~P~~v~~li~~l~~~~~~-~l~~H~Hnd~G 196 (363)
T TIGR02090 163 TVGVL-TPQKMEELIKKLKENVKL-PISVHCHNDFG 196 (363)
T ss_pred CCCcc-CHHHHHHHHHHHhcccCc-eEEEEecCCCC
Confidence 34532 778888888887653 43 46777775443
No 65
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=77.18 E-value=64 Score=31.99 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=18.9
Q ss_pred ChhhHHHHHHHHHHc-CCeEEEEEEecCC
Q 037610 189 HPQEIMPLLKAAEAS-GLSVVGVSFHVGS 216 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~l~l~Gih~H~gs 216 (405)
.++++.++++.+++. ++. .|+|+|--.
T Consensus 169 ~P~~v~~lv~~l~~~~~v~-l~~H~HNd~ 196 (365)
T TIGR02660 169 DPFSTYELVRALRQAVDLP-LEMHAHNDL 196 (365)
T ss_pred CHHHHHHHHHHHHHhcCCe-EEEEecCCC
Confidence 778888888887653 543 678888544
No 66
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=77.04 E-value=40 Score=34.90 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=69.7
Q ss_pred HHHHHHHHhhcCCCCCccEEEEeHH-----HHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-eEEEc-----
Q 037610 35 TEFMQSTILKRQEFDEVPFYLMDLG-----VVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGS-NFDCG----- 103 (405)
Q Consensus 35 ~~~~~~~~~~~~~~~t~P~~v~d~~-----~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~va----- 103 (405)
.+.++.++. .+- ...++|.. .+.+.++.+++.+|++.+. ++.-...+-++.+.+.|+ ++.|.
T Consensus 230 ~e~a~~L~~----agv-dvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi--~g~v~t~e~a~~l~~aGad~i~vg~g~gs 302 (486)
T PRK05567 230 EERAEALVE----AGV-DVLVVDTAHGHSEGVLDRVREIKAKYPDVQII--AGNVATAEAARALIEAGADAVKVGIGPGS 302 (486)
T ss_pred HHHHHHHHH----hCC-CEEEEECCCCcchhHHHHHHHHHhhCCCCCEE--EeccCCHHHHHHHHHcCCCEEEECCCCCc
Confidence 345555553 234 45667753 6777788888888765543 366667888888888888 67663
Q ss_pred ----------------CHHHHHHHH-hCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecC
Q 037610 104 ----------------SRSEIEAVL-LLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDS 148 (405)
Q Consensus 104 ----------------S~~E~~~a~-~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds 148 (405)
+..|+..+. +.|+ .|+..|...+..++..|+..|...+.+.+
T Consensus 303 ~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~---~viadGGi~~~~di~kAla~GA~~v~~G~ 361 (486)
T PRK05567 303 ICTTRIVAGVGVPQITAIADAAEAAKKYGI---PVIADGGIRYSGDIAKALAAGASAVMLGS 361 (486)
T ss_pred cccceeecCCCcCHHHHHHHHHHHhccCCC---eEEEcCCCCCHHHHHHHHHhCCCEEEECc
Confidence 233333322 2343 38888888899999999999987777765
No 67
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=76.68 E-value=69 Score=30.26 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCC-eEEEc---C-------------HHHHHHHHhCCCCCCcEE-EcCCC-CCHHHHHHHHHcCCcEEE--
Q 037610 87 PALLEALAALGS-NFDCG---S-------------RSEIEAVLLLDVSPDRII-YANPC-KPVSHIKYAASVGVNLTT-- 145 (405)
Q Consensus 87 ~~vl~~l~~~G~-g~~va---S-------------~~E~~~a~~~G~~~~~Ii-~~gp~-k~~~~l~~a~~~gv~~i~-- 145 (405)
..+++.|.+.|+ .+|+. + .+.++.+++...+..++. +.-+. ...++++.+.+.|+..+.
T Consensus 23 ~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~ 102 (266)
T cd07944 23 KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVA 102 (266)
T ss_pred HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEe
Confidence 456666666666 56654 1 233444444432122333 33232 245677777777765322
Q ss_pred --ecCHHHHHHHHhHCCCCeEEEEEec
Q 037610 146 --VDSVEELDKIRNWHPKSDLLIRIKS 170 (405)
Q Consensus 146 --vds~~el~~i~~~~~~~~v~lRi~~ 170 (405)
..+++++....+..++..+-+++++
T Consensus 103 ~~~~~~~~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 103 FHKHEFDEALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred cccccHHHHHHHHHHHHHCCCeEEEEE
Confidence 2333434333343444444455553
No 68
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=76.22 E-value=87 Score=31.24 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=19.1
Q ss_pred ChhhHHHHHHHHHHc-CCeEEEEEEecCCC
Q 037610 189 HPQEIMPLLKAAEAS-GLSVVGVSFHVGSE 217 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~l~l~Gih~H~gs~ 217 (405)
.++++.++++.+++. ++ ..|+|+|--.+
T Consensus 172 ~P~~v~~lv~~l~~~~~~-~l~~H~Hnd~G 200 (378)
T PRK11858 172 DPFTMYELVKELVEAVDI-PIEVHCHNDFG 200 (378)
T ss_pred CHHHHHHHHHHHHHhcCC-eEEEEecCCcC
Confidence 778888888877653 44 36788885443
No 69
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=75.57 E-value=8.2 Score=28.62 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=45.8
Q ss_pred EEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCC--CCChhhHHHHHHHHHHcCCeEEEEEE
Q 037610 143 LTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGA--GHHPQEIMPLLKAAEASGLSVVGVSF 212 (405)
Q Consensus 143 ~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi--~~~~~e~~~~~~~~~~~~l~l~Gih~ 212 (405)
+++++|..+.-+..+..++.++-.|+-|-... +..+ -|+ .++.++...+.+.+++.++.+.|++-
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~---i~~~--CG~al~~~~~d~~~i~~~l~~~~i~~~~iy~ 71 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPTPRE---ISAG--CGLALRFEPEDLEKIKEILEENGIEYEGIYE 71 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCCChh---ccCC--CCEEEEEChhhHHHHHHHHHHCCCCeeEEEE
Confidence 57999999999888877777777888764321 2111 221 11567788888888889999999873
No 70
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=75.43 E-value=98 Score=31.68 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=66.7
Q ss_pred cEEEEeH-----HHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-eEEEc--------C-------------
Q 037610 52 PFYLMDL-----GVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGS-NFDCG--------S------------- 104 (405)
Q Consensus 52 P~~v~d~-----~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~va--------S------------- 104 (405)
-..++|. ..+.+.++++++.+|+..+. ++.-..++-++.+.+.|+ .+.|. +
T Consensus 238 d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi--~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~ 315 (450)
T TIGR01302 238 DVIVIDSSHGHSIYVIDSIKEIKKTYPDLDII--AGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITA 315 (450)
T ss_pred CEEEEECCCCcHhHHHHHHHHHHHhCCCCCEE--EEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHH
Confidence 5666776 66778889999888865543 366667888889999998 56554 1
Q ss_pred HHHHHH-HHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCH
Q 037610 105 RSEIEA-VLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSV 149 (405)
Q Consensus 105 ~~E~~~-a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~ 149 (405)
..|+.. +.+.|+ .|+..|..++..++..|+..|...+.+.+.
T Consensus 316 i~~~~~~~~~~~v---pviadGGi~~~~di~kAla~GA~~V~~G~~ 358 (450)
T TIGR01302 316 VYDVAEYAAQSGI---PVIADGGIRYSGDIVKALAAGADAVMLGSL 358 (450)
T ss_pred HHHHHHHHhhcCC---eEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 133333 233454 388888899999999999999887777763
No 71
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=74.98 E-value=6.9 Score=38.02 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhcCCCCCccEEEE-------eHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHH
Q 037610 34 LTEFMQSTILKRQEFDEVPFYLM-------DLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRS 106 (405)
Q Consensus 34 ~~~~~~~~~~~~~~~~t~P~~v~-------d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~ 106 (405)
+..+++.+.. .-+- |+.+. |.+.+++-++..+.. + -+.+++-......++++..++|+.+-+.+..
T Consensus 112 ~~~~Vk~V~e---avd~-PL~Id~s~n~~kD~evleaale~~~g~--~-pLInSat~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 112 AAKTVEEVLQ---AVDV-PLIIGGSGNPEKDAEVLEKVAEAAEGE--R-CLLGSAEEDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HHHHHHHHHH---hCCC-CEEEecCCCCCCCHHHHHHHHHHhCCC--C-CEEEECCHHHHHHHHHHHHHhCCeEEEEcHH
Confidence 6666776643 3566 99887 788888887766532 1 2666666654778999999999988888988
Q ss_pred HHHHHH-------hCCCCCCcEEEcCCC
Q 037610 107 EIEAVL-------LLDVSPDRIIYANPC 127 (405)
Q Consensus 107 E~~~a~-------~~G~~~~~Ii~~gp~ 127 (405)
++..+. ++|+++++|++....
T Consensus 185 Dln~ak~L~~~l~~~Gi~~edIviDP~~ 212 (319)
T PRK04452 185 DINLAKQLNILLTELGVPRERIVMDPTT 212 (319)
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEeCCc
Confidence 776544 469999999997443
No 72
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=74.32 E-value=18 Score=32.36 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHcCC--eEEEcCHHHHHHHHhCCCC
Q 037610 85 PEPALLEALAALGS--NFDCGSRSEIEAVLLLDVS 117 (405)
Q Consensus 85 ~~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~ 117 (405)
...++++.+++.+. -+||+|.+|...+.++|++
T Consensus 80 ~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D 114 (192)
T PF04131_consen 80 TLEELIREIKEKYQLVMADISTLEEAINAAELGFD 114 (192)
T ss_dssp -HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-S
T ss_pred CHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCC
Confidence 36788888888886 6999999999999999874
No 73
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=73.13 E-value=81 Score=30.77 Aligned_cols=92 Identities=15% Similarity=0.274 Sum_probs=66.4
Q ss_pred CccEEEEeH-----HHHHHHHHHHHHhCCCCceeeeeccC-CcHHHHHHHHHcCC-eEEEcC------------------
Q 037610 50 EVPFYLMDL-----GVVVSLYNHMISNLPMIHPHYAVKCN-PEPALLEALAALGS-NFDCGS------------------ 104 (405)
Q Consensus 50 t~P~~v~d~-----~~l~~n~~~~~~~~~~~~i~yavKaN-~~~~vl~~l~~~G~-g~~vaS------------------ 104 (405)
+ -+.++|. ..+.+.++.+++.+|... .+|-| ...+.++.|.+.|+ ++.|+.
T Consensus 109 ~-d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~---vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 109 P-EYITIDIAHGHSNSVINMIKHIKTHLPDSF---VIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred C-CEEEEeCccCchHHHHHHHHHHHHhCCCCE---EEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCc
Confidence 5 6788999 889999999999987532 34443 37889999999998 887771
Q ss_pred --HHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEec
Q 037610 105 --RSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 105 --~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vd 147 (405)
+.=+..+.++ .. -.|+..|..++..++-.|+..|...+.+.
T Consensus 185 ~~l~ai~ev~~a-~~-~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 185 WQLAALRWCAKA-AR-KPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred hHHHHHHHHHHh-cC-CeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 1111122222 22 24888999999999999999998765555
No 74
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=72.84 E-value=18 Score=33.00 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=41.9
Q ss_pred cHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcE-----------EEcCCCCCHHHHHHHHHcCCcEEEecC
Q 037610 86 EPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRI-----------IYANPCKPVSHIKYAASVGVNLTTVDS 148 (405)
Q Consensus 86 ~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~I-----------i~~gp~k~~~~l~~a~~~gv~~i~vds 148 (405)
...+++...+.|+ ++.+.+.++++.+++. .+-+-| ++.++ ..++++.+.+.|+..+.+|.
T Consensus 25 ~~~~a~a~~~~G~~~~~~~~~~~i~~i~~~-~~~Pil~~~~~d~~~~~~~~~~--~~~~v~~a~~aGad~I~~d~ 96 (221)
T PRK01130 25 MAAMALAAVQGGAVGIRANGVEDIKAIRAV-VDVPIIGIIKRDYPDSEVYITP--TLKEVDALAAAGADIIALDA 96 (221)
T ss_pred HHHHHHHHHHCCCeEEEcCCHHHHHHHHHh-CCCCEEEEEecCCCCCCceECC--CHHHHHHHHHcCCCEEEEeC
Confidence 3577788888888 8999999999888875 222211 12233 46789999999988666653
No 75
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=72.65 E-value=87 Score=29.55 Aligned_cols=127 Identities=11% Similarity=0.133 Sum_probs=76.3
Q ss_pred cHHHHHHHHHhhcCCCCCccEEE--EeHHHHHHHHHHHHHhCCCCceeeeeccCC--cHHHHHHHHHcCCeEEE-cC---
Q 037610 33 ELTEFMQSTILKRQEFDEVPFYL--MDLGVVVSLYNHMISNLPMIHPHYAVKCNP--EPALLEALAALGSNFDC-GS--- 104 (405)
Q Consensus 33 ~~~~~~~~~~~~~~~~~t~P~~v--~d~~~l~~n~~~~~~~~~~~~i~yavKaN~--~~~vl~~l~~~G~g~~v-aS--- 104 (405)
.+..+++.+.. ..+. |+-+ ++.+.+++-++.. ++..+.-++..-. .+.+++.+.++|+.+-+ ..
T Consensus 56 r~~~~v~~l~~---~~~~-plsIDT~~~~v~eaaL~~~----~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~ 127 (261)
T PRK07535 56 TMEWLVETVQE---VVDV-PLCIDSPNPAAIEAGLKVA----KGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDT 127 (261)
T ss_pred HHHHHHHHHHH---hCCC-CEEEeCCCHHHHHHHHHhC----CCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCC
Confidence 34555555532 3466 8755 6666666665543 3566888888833 77899999999986554 22
Q ss_pred ---------HHH----HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecC
Q 037610 105 ---------RSE----IEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSP 171 (405)
Q Consensus 105 ---------~~E----~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~ 171 (405)
..+ +..+.++|+++++|++-...-+. ..+.. -+.++++.++.+.+..|..++.+-++
T Consensus 128 g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~-------~~~~~-~~~~~l~~i~~l~~~~pg~p~l~G~S-- 197 (261)
T PRK07535 128 GIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPL-------SAAQD-AGPEVLETIRRIKELYPKVHTTCGLS-- 197 (261)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcc-------cCChH-HHHHHHHHHHHHHHhCCCCCEEEEeC--
Confidence 122 34477889999999986322110 00001 12344666677777666666666553
Q ss_pred CCCCCCCCCCCCCCC
Q 037610 172 DDSGAKYPLDSKYGA 186 (405)
Q Consensus 172 ~~~~~~~~~~srfGi 186 (405)
.-.||+
T Consensus 198 ---------n~Sfgl 203 (261)
T PRK07535 198 ---------NISFGL 203 (261)
T ss_pred ---------CCccCC
Confidence 246898
No 76
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=72.57 E-value=23 Score=35.66 Aligned_cols=56 Identities=9% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCC---cHHHHHHHHHcCC---eEEEcCHH
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLPM-IHPHYAVKCNP---EPALLEALAALGS---NFDCGSRS 106 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKaN~---~~~vl~~l~~~G~---g~~vaS~~ 106 (405)
|| |.. ++.+.+++-++.+++.++- -..-.++=+|| ..+.++.+.+.|+ .+.|-|.+
T Consensus 75 GT-ps~-l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~ 137 (400)
T PRK07379 75 GT-PSL-LSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQ 137 (400)
T ss_pred Cc-ccc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCC
Confidence 46 654 4889999999999988751 11235566777 6789999999986 34454443
No 77
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=72.48 E-value=1e+02 Score=30.39 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=31.2
Q ss_pred cHHHHHHHHHcCC-eEEEcCH------------HHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCc
Q 037610 86 EPALLEALAALGS-NFDCGSR------------SEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVN 142 (405)
Q Consensus 86 ~~~vl~~l~~~G~-g~~vaS~------------~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~ 142 (405)
-.++++.|.+.|+ .+||.|. .|+....+. ....++...-+ ..++++.|++.|+.
T Consensus 70 Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~-~~~~~~~~l~~--n~~die~A~~~g~~ 136 (347)
T PLN02746 70 KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN-LEGARFPVLTP--NLKGFEAAIAAGAK 136 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh-ccCCceeEEcC--CHHHHHHHHHcCcC
Confidence 4588899999998 7888751 233222222 11122222222 56778888887765
No 78
>PRK15447 putative protease; Provisional
Probab=70.43 E-value=1.1e+02 Score=29.59 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=75.6
Q ss_pred CcHHHHHHHHHhhcCCCCCccEEE----------EeHHHHHHHHHHHHHhCCCCceeeee----ccCCcHHHHHHHHHcC
Q 037610 32 DELTEFMQSTILKRQEFDEVPFYL----------MDLGVVVSLYNHMISNLPMIHPHYAV----KCNPEPALLEALAALG 97 (405)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~t~P~~v----------~d~~~l~~n~~~~~~~~~~~~i~yav----KaN~~~~vl~~l~~~G 97 (405)
.+++++...+..+ . -+ .+|+ +..+.+.+-++..+++ +.+++.++ +.+....-++.+.+.|
T Consensus 15 ~~~~~~~~~~~~~--g-aD-aVY~g~~~~~~R~~f~~~~l~e~v~~~~~~--gkkvyva~p~i~~~~~e~~~l~~~l~~~ 88 (301)
T PRK15447 15 ETVRDFYQRAADS--P-VD-IVYLGETVCSKRRELKVGDWLELAERLAAA--GKEVVLSTLALVEAPSELKELRRLVENG 88 (301)
T ss_pred CCHHHHHHHHHcC--C-CC-EEEECCccCCCccCCCHHHHHHHHHHHHHc--CCEEEEEecccccCHHHHHHHHHHHhcC
Confidence 4566676666442 1 23 3555 6778888888887764 45665533 3233323333344455
Q ss_pred C-eEEEcCHHHHHHHHhCCCCCCcEEE--cCCCCCHHHHHHHHHcCCcEEEec---CHHHHHHHHhH
Q 037610 98 S-NFDCGSRSEIEAVLLLDVSPDRIIY--ANPCKPVSHIKYAASVGVNLTTVD---SVEELDKIRNW 158 (405)
Q Consensus 98 ~-g~~vaS~~E~~~a~~~G~~~~~Ii~--~gp~k~~~~l~~a~~~gv~~i~vd---s~~el~~i~~~ 158 (405)
. ++.|.+++++..+++.|++ ++. .-+..+...++...+.|+..+++. |++|++.|.+.
T Consensus 89 ~~~v~v~d~g~l~~~~e~~~~---l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELsl~eI~~i~~~ 152 (301)
T PRK15447 89 EFLVEANDLGAVRLLAERGLP---FVAGPALNCYNAATLALLARLGATRWCMPVELSRDWLANLLAQ 152 (301)
T ss_pred CCEEEEeCHHHHHHHHhcCCC---EEEecccccCCHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHh
Confidence 4 8999999999999997663 433 333456788888899998766665 45677766554
No 79
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=69.49 E-value=1.1e+02 Score=29.26 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=9.1
Q ss_pred HHHHHHH-HHcCC-eEEE
Q 037610 87 PALLEAL-AALGS-NFDC 102 (405)
Q Consensus 87 ~~vl~~l-~~~G~-g~~v 102 (405)
.++++.| .+.|+ .+|+
T Consensus 22 ~~i~~~L~~~~Gv~~IEv 39 (280)
T cd07945 22 LNIAKILLQELKVDRIEV 39 (280)
T ss_pred HHHHHHHHHHhCCCEEEe
Confidence 3566664 44466 5666
No 80
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=68.62 E-value=1e+02 Score=28.84 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=19.8
Q ss_pred ChhhHHHHHHHHHHc-CCeEEEEEEecCC
Q 037610 189 HPQEIMPLLKAAEAS-GLSVVGVSFHVGS 216 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~l~l~Gih~H~gs 216 (405)
.++++.++++.+++. +....|+|+|---
T Consensus 168 ~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~ 196 (263)
T cd07943 168 LPDDVRERVRALREALDPTPVGFHGHNNL 196 (263)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEecCCc
Confidence 788888888887763 4335788888543
No 81
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=68.48 E-value=1.1e+02 Score=29.04 Aligned_cols=53 Identities=26% Similarity=0.240 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCC-eEEEcC------------HHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCc
Q 037610 87 PALLEALAALGS-NFDCGS------------RSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVN 142 (405)
Q Consensus 87 ~~vl~~l~~~G~-g~~vaS------------~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~ 142 (405)
..+++.|.+.|+ .+|+.| .+|+...+.. ....++.-..+ ..++++.|++.|+.
T Consensus 23 ~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~-~~~~~~~~~~~--~~~dv~~A~~~g~~ 88 (274)
T cd07938 23 IELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR-RPGVRYSALVP--NLRGAERALAAGVD 88 (274)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc-CCCCEEEEECC--CHHHHHHHHHcCcC
Confidence 578888888888 788873 1222222221 11222332222 46678888887765
No 82
>PRK15452 putative protease; Provisional
Probab=67.40 E-value=1.5e+02 Score=30.29 Aligned_cols=111 Identities=16% Similarity=0.088 Sum_probs=72.1
Q ss_pred EeHHHHHHHHHHHHHhCCCCceeeeeccCC-------cHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEE--cC
Q 037610 56 MDLGVVVSLYNHMISNLPMIHPHYAVKCNP-------EPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIY--AN 125 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~~~~~~i~yavKaN~-------~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~--~g 125 (405)
++.+.+++.++..++ .+.++++++=+-. ....++.+.+.|+ ++-|++++.+..+++.+-+ -.|+. .-
T Consensus 43 f~~edl~eav~~ah~--~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke~~p~-l~ih~stql 119 (443)
T PRK15452 43 FNHENLALGINEAHA--LGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVREHFPE-MPIHLSVQA 119 (443)
T ss_pred CCHHHHHHHHHHHHH--cCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHHHhCCC-CeEEEEecc
Confidence 455667777766554 3577776532222 2234666678888 9999999999999997422 23443 23
Q ss_pred CCCCHHHHHHHHHcCCcEEEec---CHHHHHHHHhHCCCCeEEEEEe
Q 037610 126 PCKPVSHIKYAASVGVNLTTVD---SVEELDKIRNWHPKSDLLIRIK 169 (405)
Q Consensus 126 p~k~~~~l~~a~~~gv~~i~vd---s~~el~~i~~~~~~~~v~lRi~ 169 (405)
...+...+++..+.|+..+++. |++|++.|.+..+..++=+-|+
T Consensus 120 ni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~~~~~~~elEvfVH 166 (443)
T PRK15452 120 NAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRQQCPDMELEVFVH 166 (443)
T ss_pred cCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHHhhCCCCCEEEEEE
Confidence 3557888898999999877775 4566666654444455555555
No 83
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=66.95 E-value=1.1e+02 Score=28.42 Aligned_cols=73 Identities=21% Similarity=0.157 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCCceeeeeccCC-----cHHHHHHHHHcCC-eEEEc--CHHHH----HHHHhCCCCCCcEEEcCCCCCH
Q 037610 63 SLYNHMISNLPMIHPHYAVKCNP-----EPALLEALAALGS-NFDCG--SRSEI----EAVLLLDVSPDRIIYANPCKPV 130 (405)
Q Consensus 63 ~n~~~~~~~~~~~~i~yavKaN~-----~~~vl~~l~~~G~-g~~va--S~~E~----~~a~~~G~~~~~Ii~~gp~k~~ 130 (405)
+-++++++.. ++.+...++.|+ ....++.+.+.|+ |+-+. ..+|. ..+++.|++ .+++..|.-+.
T Consensus 66 ~~~~~vr~~~-~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~--~i~~i~P~T~~ 142 (242)
T cd04724 66 ELVKEIRKKN-TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLD--LIFLVAPTTPD 142 (242)
T ss_pred HHHHHHhhcC-CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCc--EEEEeCCCCCH
Confidence 3444444432 344556667786 4677999999998 66661 34554 345667875 47778888778
Q ss_pred HHHHHHHH
Q 037610 131 SHIKYAAS 138 (405)
Q Consensus 131 ~~l~~a~~ 138 (405)
+.++...+
T Consensus 143 ~~i~~i~~ 150 (242)
T cd04724 143 ERIKKIAE 150 (242)
T ss_pred HHHHHHHh
Confidence 88888887
No 84
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=66.66 E-value=1e+02 Score=27.95 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCC-eEEEcCHHHHHHHHhC-----------CCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEec
Q 037610 87 PALLEALAALGS-NFDCGSRSEIEAVLLL-----------DVSPDRIIYANPCKPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 87 ~~vl~~l~~~G~-g~~vaS~~E~~~a~~~-----------G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vd 147 (405)
..+++.+.+.|+ .+++.+.+.++.+++. +++...++ .|+ +.++++.+++.|+..+.++
T Consensus 30 ~~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~-ig~--~~~~~~~a~~aGad~I~~~ 99 (219)
T cd04729 30 AAMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGLIKRDYPDSEVY-ITP--TIEEVDALAAAGADIIALD 99 (219)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCce-eCC--CHHHHHHHHHcCCCEEEEe
Confidence 466666777777 7777888777777754 11111111 223 3457888888888766664
No 85
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=65.21 E-value=1.2e+02 Score=28.14 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=15.3
Q ss_pred cHHHHHHHHHcCC-eEEEcCH
Q 037610 86 EPALLEALAALGS-NFDCGSR 105 (405)
Q Consensus 86 ~~~vl~~l~~~G~-g~~vaS~ 105 (405)
..++++.|.+.|+ .+|+.+.
T Consensus 21 ~~~i~~~L~~~GV~~IEvg~~ 41 (265)
T cd03174 21 KLEIAEALDEAGVDSIEVGSG 41 (265)
T ss_pred HHHHHHHHHHcCCCEEEeccC
Confidence 4578888888888 7777755
No 86
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=64.90 E-value=1e+02 Score=27.44 Aligned_cols=84 Identities=14% Similarity=0.071 Sum_probs=52.4
Q ss_pred HHHHHHHHHhCCCCceeeeeccC-CcHHHHHHHHHcCCeEE----EcC---HHH-HHHHHhCCCCCCcEE-EcCCCCCHH
Q 037610 62 VSLYNHMISNLPMIHPHYAVKCN-PEPALLEALAALGSNFD----CGS---RSE-IEAVLLLDVSPDRII-YANPCKPVS 131 (405)
Q Consensus 62 ~~n~~~~~~~~~~~~i~yavKaN-~~~~vl~~l~~~G~g~~----vaS---~~E-~~~a~~~G~~~~~Ii-~~gp~k~~~ 131 (405)
.+.++.+++.+|+..+..-+|.- +....++.+.+.|+.+- .++ +.| ++.+++.|+.. ++ +.+|.-+.+
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~--~~~~~~~~t~~~ 117 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEV--QVDLINVKDKVK 117 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEE--EEEecCCCChHH
Confidence 35577787777766677777754 33335788888887433 222 223 44567777632 22 246654568
Q ss_pred HHHHHHHcCCcEEEec
Q 037610 132 HIKYAASVGVNLTTVD 147 (405)
Q Consensus 132 ~l~~a~~~gv~~i~vd 147 (405)
+++.+.+.|+.++.+.
T Consensus 118 ~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 118 RAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 8888888888877764
No 87
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=64.11 E-value=55 Score=30.29 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=60.2
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCCceeeeeccC-----CcHHHHHHHHHcCC-eEEEcCHH-----HHHHHHhCCCCCCc
Q 037610 52 PFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCN-----PEPALLEALAALGS-NFDCGSRS-----EIEAVLLLDVSPDR 120 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN-----~~~~vl~~l~~~G~-g~~vaS~~-----E~~~a~~~G~~~~~ 120 (405)
..++-|.+.+.+-++.+++. +.. ..+|.. ...++++.+.+.|+ .+.+.+.. ..+.+.+.-.+ -.
T Consensus 119 ~~Ll~~p~~l~eiv~avr~~--~~p--VsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~~~-ip 193 (233)
T cd02911 119 EALLKDPERLSEFIKALKET--GVP--VSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDISTE-LF 193 (233)
T ss_pred hHHcCCHHHHHHHHHHHHhc--CCC--EEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhcCC-CE
Confidence 45677888999999998873 332 344443 35788999999998 67665432 23334433212 23
Q ss_pred EEEcCCCCCHHHHHHHHHcCCcEEEe
Q 037610 121 IIYANPCKPVSHIKYAASVGVNLTTV 146 (405)
Q Consensus 121 Ii~~gp~k~~~~l~~a~~~gv~~i~v 146 (405)
|+-+|...+.++..++++.|+..+.+
T Consensus 194 VIgnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 194 IIGNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred EEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 78888888999999998888765444
No 88
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=63.80 E-value=1.3e+02 Score=29.35 Aligned_cols=92 Identities=13% Similarity=0.205 Sum_probs=63.9
Q ss_pred cEEEE-----eHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-eEEEc--------C------------H
Q 037610 52 PFYLM-----DLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGS-NFDCG--------S------------R 105 (405)
Q Consensus 52 P~~v~-----d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~va--------S------------~ 105 (405)
-+..+ +...+.+-++.+++.+|+..+. .|--.+.+-++.|.+.|+ .+.|. + .
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi--~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVI--AGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEE--EEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 46677 7888888899999999875442 333447788888999998 55544 1 1
Q ss_pred HHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEec
Q 037610 106 SEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 106 ~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vd 147 (405)
.-+..+.++ +. -.|+..|...+..++..|+..|...+.+.
T Consensus 191 ~ai~~~~~~-~~-ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 191 AALRWCAKA-AR-KPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHH-cC-CCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 113333332 22 24888999999999999999998766665
No 89
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=63.36 E-value=1.7e+02 Score=29.26 Aligned_cols=131 Identities=20% Similarity=0.271 Sum_probs=72.6
Q ss_pred cHHHHHHHHHcCC-eEEEc----CHHH---HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEe-cCHHH-----
Q 037610 86 EPALLEALAALGS-NFDCG----SRSE---IEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTV-DSVEE----- 151 (405)
Q Consensus 86 ~~~vl~~l~~~G~-g~~va----S~~E---~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~v-ds~~e----- 151 (405)
-..+++.|.+.|+ .+|+. +..| ++.+.+.|.+. +++..+.. ..++++.|++.|+..+.+ .+.++
T Consensus 28 k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~-~i~~~~r~-~~~di~~a~~~g~~~i~i~~~~Sd~h~~~ 105 (378)
T PRK11858 28 KLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNA-SILALNRA-VKSDIDASIDCGVDAVHIFIATSDIHIKH 105 (378)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCe-EEEEEccc-CHHHHHHHHhCCcCEEEEEEcCCHHHHHH
Confidence 3467777777776 56663 3333 23333445443 34433333 366777887777653322 23222
Q ss_pred ------------HHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCC
Q 037610 152 ------------LDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEAT 219 (405)
Q Consensus 152 ------------l~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~ 219 (405)
+....+.+++....+++++... +| . +++.+.++++.+.+.+...+.|.=-.|..
T Consensus 106 ~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~--------~r--~--~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~-- 171 (378)
T PRK11858 106 KLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDA--------SR--T--DLDFLIEFAKAAEEAGADRVRFCDTVGIL-- 171 (378)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccC--------CC--C--CHHHHHHHHHHHHhCCCCEEEEeccCCCC--
Confidence 2222223344445566654321 23 3 77888888888877788888888889975
Q ss_pred CHHHHHHHHHHHH
Q 037610 220 NFAAFRGAIAAAK 232 (405)
Q Consensus 220 ~~~~~~~~i~~~~ 232 (405)
.+..+.+.++.+.
T Consensus 172 ~P~~v~~lv~~l~ 184 (378)
T PRK11858 172 DPFTMYELVKELV 184 (378)
T ss_pred CHHHHHHHHHHHH
Confidence 4555555454443
No 90
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=63.21 E-value=2.1e+02 Score=30.57 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCcEE-EecCHHHHHHHHhH---CCCCeEEEEEecCCCCCCC-------------CCC-------CCCCC
Q 037610 130 VSHIKYAASVGVNLT-TVDSVEELDKIRNW---HPKSDLLIRIKSPDDSGAK-------------YPL-------DSKYG 185 (405)
Q Consensus 130 ~~~l~~a~~~gv~~i-~vds~~el~~i~~~---~~~~~v~lRi~~~~~~~~~-------------~~~-------~srfG 185 (405)
..+++.|.++|+..+ .+|+.++++.+.+. .++....+........+.. .+. .--.|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G 178 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAG 178 (592)
T ss_pred HHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCC
Confidence 456778888887643 56777777655432 2222233332221100000 001 12345
Q ss_pred CCCChhhHHHHHHHHHHc-CCeEEEEEEecCCC
Q 037610 186 AGHHPQEIMPLLKAAEAS-GLSVVGVSFHVGSE 217 (405)
Q Consensus 186 i~~~~~e~~~~~~~~~~~-~l~l~Gih~H~gs~ 217 (405)
.- .++++.++++.+++. ++ ..|+|+|--++
T Consensus 179 ~~-~P~~~~~lv~~lk~~~~~-pi~~H~Hnt~G 209 (592)
T PRK09282 179 LL-TPYAAYELVKALKEEVDL-PVQLHSHCTSG 209 (592)
T ss_pred Cc-CHHHHHHHHHHHHHhCCC-eEEEEEcCCCC
Confidence 32 788999999988764 54 47899997665
No 91
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=63.18 E-value=1.4e+02 Score=28.48 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=11.3
Q ss_pred HHHHHHHHHcCC-eEEEc
Q 037610 87 PALLEALAALGS-NFDCG 103 (405)
Q Consensus 87 ~~vl~~l~~~G~-g~~va 103 (405)
..+++.|.+.|+ .+||.
T Consensus 29 ~~ia~~L~~~Gv~~IEvg 46 (287)
T PRK05692 29 IALIDRLSAAGLSYIEVA 46 (287)
T ss_pred HHHHHHHHHcCCCEEEeC
Confidence 466667777776 66665
No 92
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=63.01 E-value=1.6e+02 Score=28.93 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=20.0
Q ss_pred ChhhHHHHHHHHHHc---CCeEEEEEEecCC
Q 037610 189 HPQEIMPLLKAAEAS---GLSVVGVSFHVGS 216 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~---~l~l~Gih~H~gs 216 (405)
.++++.++++.+++. .+ -.|+|+|---
T Consensus 171 ~P~~v~~~v~~l~~~l~~~i-~ig~H~Hnnl 200 (337)
T PRK08195 171 LPEDVRDRVRALRAALKPDT-QVGFHGHNNL 200 (337)
T ss_pred CHHHHHHHHHHHHHhcCCCC-eEEEEeCCCc
Confidence 788999999888753 34 4788888543
No 93
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.99 E-value=1.3e+02 Score=28.95 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=69.1
Q ss_pred eHHHHHHHHHHHHHhCCCCceeeeeccCC------cHHHHHHHHHcCC-eEEE----cCHHHHHHHHhCCCCCCcEEEcC
Q 037610 57 DLGVVVSLYNHMISNLPMIHPHYAVKCNP------EPALLEALAALGS-NFDC----GSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 57 d~~~l~~n~~~~~~~~~~~~i~yavKaN~------~~~vl~~l~~~G~-g~~v----aS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
+.+...+.++++++.++ .+-..+++|. ...+++.+.+.++ .+|- ...+.+..+++. .+. .|....
T Consensus 160 ~~~~d~~~v~~lr~~~g--~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~-~~i-pIa~~E 235 (316)
T cd03319 160 DLEDDIERIRAIREAAP--DARLRVDANQGWTPEEAVELLRELAELGVELIEQPVPAGDDDGLAYLRDK-SPL-PIMADE 235 (316)
T ss_pred ChhhHHHHHHHHHHhCC--CCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHhc-CCC-CEEEeC
Confidence 34566788888888887 4556899987 3567777888887 7772 233445555444 233 377777
Q ss_pred CCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCC
Q 037610 126 PCKPVSHIKYAASVG-VNLTTVD-----SVEELDKIRNWHPKS 162 (405)
Q Consensus 126 p~k~~~~l~~a~~~g-v~~i~vd-----s~~el~~i~~~~~~~ 162 (405)
...+.++++.+++.+ +..+.+| .+.+..++.+.+...
T Consensus 236 ~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~ 278 (316)
T cd03319 236 SCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAA 278 (316)
T ss_pred CCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHc
Confidence 778889999988854 5556666 677777777765443
No 94
>PRK09875 putative hydrolase; Provisional
Probab=62.66 E-value=1.5e+02 Score=28.50 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=34.9
Q ss_pred CHHHHHHHHhCCCCCCcEEEcCCC--CCHHHHHHHHHcCCcEEEecC
Q 037610 104 SRSEIEAVLLLDVSPDRIIYANPC--KPVSHIKYAASVGVNLTTVDS 148 (405)
Q Consensus 104 S~~E~~~a~~~G~~~~~Ii~~gp~--k~~~~l~~a~~~gv~~i~vds 148 (405)
..+.++.+.+.|++++++++.+.. .+.+.++++++.|+. +-+|+
T Consensus 165 g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~-l~fD~ 210 (292)
T PRK09875 165 GLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAY-VQFDT 210 (292)
T ss_pred hHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCE-EEecc
Confidence 345588888999999999998763 467889999999984 77765
No 95
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=62.65 E-value=41 Score=33.23 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=33.3
Q ss_pred EEeHHHHHHHHHHHHHhCC-CCceeeeeccCC---cHHHHHHHHHcCC
Q 037610 55 LMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP---EPALLEALAALGS 98 (405)
Q Consensus 55 v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~---~~~vl~~l~~~G~ 98 (405)
+++.+.+++-++.+++.++ ..+ .++=+|| ..+.++.+.+.|+
T Consensus 69 ~L~~~~l~~ll~~i~~~~~~~~e--itiE~nP~~lt~e~l~~lk~~G~ 114 (353)
T PRK05904 69 CLNDQLLDILLSTIKPYVDNNCE--FTIECNPELITQSQINLLKKNKV 114 (353)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCe--EEEEeccCcCCHHHHHHHHHcCC
Confidence 4788999999999988876 333 4677787 6789999999985
No 96
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=61.93 E-value=42 Score=34.35 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=40.1
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC---cHHHHHHHHHcCC---eEEEcCHHH
Q 037610 52 PFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP---EPALLEALAALGS---NFDCGSRSE 107 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~---~~~vl~~l~~~G~---g~~vaS~~E 107 (405)
|.+ ++.+.+.+-++.+++.++ ....-.++-+|+ ..+.++.+.+.|+ .+.|-|.++
T Consensus 125 Ps~-L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d 186 (449)
T PRK09058 125 PTA-LSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNT 186 (449)
T ss_pred ccc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCH
Confidence 443 678899999999998887 222346788887 6789999999996 455656433
No 97
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=61.92 E-value=1.9e+02 Score=30.10 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=70.3
Q ss_pred HHHHHHHHhhcCCCCCccEEEEeH---H--HHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-eEEEc-----
Q 037610 35 TEFMQSTILKRQEFDEVPFYLMDL---G--VVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGS-NFDCG----- 103 (405)
Q Consensus 35 ~~~~~~~~~~~~~~~t~P~~v~d~---~--~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~va----- 103 (405)
.+.++.++. .+- -+.++|. + ...+.++++++.+|++.+. .+.-.+.+-++.+.+.|+ ++.|.
T Consensus 243 ~~~~~~l~~----ag~-d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~--aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 243 IERAAALIE----AGV-DVLVVDSSQGNSIYQIDMIKKLKSNYPHVDII--AGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHH----CCC-CEEEEecCCCCchHHHHHHHHHHhhCCCceEE--ECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 444555543 344 5666776 1 2346788888888865544 366667888889999998 55442
Q ss_pred ---C-------------HHHHH-HHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCH
Q 037610 104 ---S-------------RSEIE-AVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSV 149 (405)
Q Consensus 104 ---S-------------~~E~~-~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~ 149 (405)
+ +.|+. .+.+.|+ .++..|..++..++..|+..|...+.+.+.
T Consensus 316 ~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v---~vIadGGi~~~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 316 ICITQEVCAVGRPQASAVYHVARYARERGV---PCIADGGIKNSGDICKALALGADCVMLGSL 375 (495)
T ss_pred ccccchhccCCCChHHHHHHHHHHHhhcCC---eEEecCCCCCHHHHHHHHHcCCCEEEECch
Confidence 1 12333 3344565 388888889999999999999887788775
No 98
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=61.72 E-value=95 Score=25.95 Aligned_cols=85 Identities=8% Similarity=-0.078 Sum_probs=54.9
Q ss_pred eHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHH---------HHHHHhCCCCCCcEEEcCC
Q 037610 57 DLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSE---------IEAVLLLDVSPDRIIYANP 126 (405)
Q Consensus 57 d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E---------~~~a~~~G~~~~~Ii~~gp 126 (405)
|...+.+|+-...=.-.++++.+.=.-.+..++++...+.++ -+.++|..+ ++.+++.|.+ ...++.|.
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~-~i~vivGG 91 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRP-DILVVVGG 91 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCC-CCEEEEeC
Confidence 455566665432211237787777766777889999999887 566666553 2334455754 34455565
Q ss_pred CCCHHHHHHHHHcCCc
Q 037610 127 CKPVSHIKYAASVGVN 142 (405)
Q Consensus 127 ~k~~~~l~~a~~~gv~ 142 (405)
...+++.+...++|+.
T Consensus 92 ~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 92 VIPPQDFDELKEMGVA 107 (132)
T ss_pred CCChHhHHHHHHCCCC
Confidence 5677888888999986
No 99
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.59 E-value=32 Score=31.44 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=25.1
Q ss_pred cCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEE-EecCHHHHHHHHhH
Q 037610 103 GSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLT-TVDSVEELDKIRNW 158 (405)
Q Consensus 103 aS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i-~vds~~el~~i~~~ 158 (405)
-+.+|++.+.++|. +++. .|+.+++-++.+.++|+.++ -+-+.+|+....+.
T Consensus 75 l~~~~a~~a~~aGA---~Fiv-sP~~~~~vi~~a~~~~i~~iPG~~TptEi~~a~~~ 127 (212)
T PRK05718 75 LNPEQLAQAIEAGA---QFIV-SPGLTPPLLKAAQEGPIPLIPGVSTPSELMLGMEL 127 (212)
T ss_pred cCHHHHHHHHHcCC---CEEE-CCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHC
Confidence 34455555555553 2332 34445555555555555432 34555555544443
No 100
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=61.23 E-value=1.3e+02 Score=29.76 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCC-eEEE----cCHHHHH---HHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEe-cCHHH------
Q 037610 87 PALLEALAALGS-NFDC----GSRSEIE---AVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTV-DSVEE------ 151 (405)
Q Consensus 87 ~~vl~~l~~~G~-g~~v----aS~~E~~---~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~v-ds~~e------ 151 (405)
.++++.|.+.|+ .+|| +|..|.+ .+.+.+.. .++.-.... ..++++.|++.|+..+.+ .+.++
T Consensus 25 ~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~-~~v~~~~r~-~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~ 102 (363)
T TIGR02090 25 VEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLN-AEICSLARA-LKKDIDKAIDCGVDSIHTFIATSPIHLKYK 102 (363)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCC-cEEEEEccc-CHHHHHHHHHcCcCEEEEEEcCCHHHHHHH
Confidence 467777777776 5666 4455543 33334443 334433333 467788888877654433 22211
Q ss_pred -----------HHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCCC
Q 037610 152 -----------LDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATN 220 (405)
Q Consensus 152 -----------l~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~ 220 (405)
+....+.+++....++++.... +| . +++.+.++++.+.+.+..-..+.=..|.. .
T Consensus 103 ~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda--------~r--~--~~~~l~~~~~~~~~~g~~~i~l~DT~G~~--~ 168 (363)
T TIGR02090 103 LKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDA--------TR--T--DIDFLIKVFKRAEEAGADRINIADTVGVL--T 168 (363)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec--------CC--C--CHHHHHHHHHHHHhCCCCEEEEeCCCCcc--C
Confidence 1122222333344455553211 22 3 66777777777766677777777778864 3
Q ss_pred HHHHHHHHHHH
Q 037610 221 FAAFRGAIAAA 231 (405)
Q Consensus 221 ~~~~~~~i~~~ 231 (405)
+..+.+.++.+
T Consensus 169 P~~v~~li~~l 179 (363)
T TIGR02090 169 PQKMEELIKKL 179 (363)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 101
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=61.21 E-value=33 Score=35.13 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=36.1
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCC---cHHHHHHHHHcCC
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLPM-IHPHYAVKCNP---EPALLEALAALGS 98 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKaN~---~~~vl~~l~~~G~ 98 (405)
|| |.+ ++.+.|.+-++.+++.++- ...-.++-+|+ ..+.++.+.+.|+
T Consensus 111 Gt-Ps~-l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~ 162 (453)
T PRK09249 111 GT-PTF-LSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGF 162 (453)
T ss_pred cc-ccc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCC
Confidence 45 543 5889999999999988751 12346777887 5799999999996
No 102
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=60.48 E-value=92 Score=25.39 Aligned_cols=84 Identities=13% Similarity=-0.049 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHH---------HHHHHhCCCCCCcEEEcCCC
Q 037610 58 LGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSE---------IEAVLLLDVSPDRIIYANPC 127 (405)
Q Consensus 58 ~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E---------~~~a~~~G~~~~~Ii~~gp~ 127 (405)
...+..++-...-...+.++.|-=...+...+++.+.+.+. -+.+++..+ ++.+++.|.+.-.+++.|.
T Consensus 11 ~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~- 89 (122)
T cd02071 11 GHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGI- 89 (122)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECC-
Confidence 33444444333222347888888888888999999999987 445554322 4556666765334555554
Q ss_pred CCHHHHHHHHHcCCc
Q 037610 128 KPVSHIKYAASVGVN 142 (405)
Q Consensus 128 k~~~~l~~a~~~gv~ 142 (405)
..+++.+.+.++|+.
T Consensus 90 ~~~~~~~~~~~~G~d 104 (122)
T cd02071 90 IPPEDYELLKEMGVA 104 (122)
T ss_pred CCHHHHHHHHHCCCC
Confidence 467888888999986
No 103
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=60.41 E-value=1.7e+02 Score=28.49 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=55.0
Q ss_pred cEEEEeH-----HHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-eEEEc--------CH------------
Q 037610 52 PFYLMDL-----GVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGS-NFDCG--------SR------------ 105 (405)
Q Consensus 52 P~~v~d~-----~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~va--------S~------------ 105 (405)
++.++|. +...+.++++++..|++.+.. ......+-++.+.+.|+ .+.|. +.
T Consensus 108 ~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~ 185 (325)
T cd00381 108 DVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATA 185 (325)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHH
Confidence 5555654 456677777877776444332 33456677778888887 44431 11
Q ss_pred -HHHHHHHh-CCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecC
Q 037610 106 -SEIEAVLL-LDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDS 148 (405)
Q Consensus 106 -~E~~~a~~-~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds 148 (405)
.|+..+.. .++ .|+-.|...+..++..|+..|...+.+.+
T Consensus 186 i~~v~~~~~~~~v---pVIA~GGI~~~~di~kAla~GA~~VmiGt 227 (325)
T cd00381 186 VADVAAAARDYGV---PVIADGGIRTSGDIVKALAAGADAVMLGS 227 (325)
T ss_pred HHHHHHHHhhcCC---cEEecCCCCCHHHHHHHHHcCCCEEEecc
Confidence 23322222 233 27777777788888888888876555554
No 104
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=59.87 E-value=1e+02 Score=30.18 Aligned_cols=65 Identities=12% Similarity=0.232 Sum_probs=37.9
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCH-HHH-----HHHHHHHHHHHHHH
Q 037610 165 LIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNF-AAF-----RGAIAAAKAVFDTA 238 (405)
Q Consensus 165 ~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~-~~~-----~~~i~~~~~~~~~~ 238 (405)
.+||||+. +| +.+.+.++++.+++.++- ..|-...||-..+. +.| ...++.+.+.++.+
T Consensus 96 kiRINPGN-----------ig---~~e~v~~vv~~ak~~~ip-IRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 96 KVRINPGN-----------IG---FRERVRDVVEKARDHGKA-MRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred eEEECCCC-----------CC---CHHHHHHHHHHHHHCCCC-EEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 57888754 23 357788888888877654 33556666632111 111 12345555666777
Q ss_pred HhCCCC
Q 037610 239 ARTSNN 244 (405)
Q Consensus 239 ~~~G~~ 244 (405)
+++||+
T Consensus 161 e~~~F~ 166 (346)
T TIGR00612 161 EKLGFR 166 (346)
T ss_pred HHCCCC
Confidence 888863
No 105
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=59.38 E-value=43 Score=34.32 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=33.2
Q ss_pred EeHHHHHHHHHHHHHhCC-CCceeeeeccCC---cHHHHHHHHHcCC
Q 037610 56 MDLGVVVSLYNHMISNLP-MIHPHYAVKCNP---EPALLEALAALGS 98 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~---~~~vl~~l~~~G~ 98 (405)
++.+.+.+-++.+++.++ ....-..+=+|+ +.+.++.|.+.|+
T Consensus 116 l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~ 162 (455)
T TIGR00538 116 LSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGF 162 (455)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCC
Confidence 478999999999998876 222345666777 6799999999996
No 106
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=59.15 E-value=48 Score=33.67 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=52.4
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCC-C-ceeeeeccCC---cHHHHHHHHHcCC-----eEEEcCHHHH----------
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLPM-I-HPHYAVKCNP---EPALLEALAALGS-----NFDCGSRSEI---------- 108 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~~-~-~i~yavKaN~---~~~vl~~l~~~G~-----g~~vaS~~E~---------- 108 (405)
|| |.+ ++.+.+.+-++.+++.++- . ..-.++=+|+ ..+.++.+.+.|+ |++-.+..++
T Consensus 100 GT-Ps~-l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~ 177 (430)
T PRK08208 100 GT-PTL-LNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRA 177 (430)
T ss_pred Cc-ccc-CCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHH
Confidence 35 543 6788899999999887751 1 2346777887 5789999999984 4444443332
Q ss_pred ------HHHHhCCCCC--CcEEEcCCCCCHHHHHH
Q 037610 109 ------EAVLLLDVSP--DRIIYANPCKPVSHIKY 135 (405)
Q Consensus 109 ------~~a~~~G~~~--~~Ii~~gp~k~~~~l~~ 135 (405)
+.++++|++. -.++|+-|.-+.++++.
T Consensus 178 ~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~ 212 (430)
T PRK08208 178 DVHQALEWIRAAGFPILNIDLIYGIPGQTHASWME 212 (430)
T ss_pred HHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHH
Confidence 3344556642 12455556666554433
No 107
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=59.06 E-value=1.6e+02 Score=27.81 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=17.6
Q ss_pred ChhhHHHHHHHHHHc-CCeEEEEEEecCC
Q 037610 189 HPQEIMPLLKAAEAS-GLSVVGVSFHVGS 216 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~l~l~Gih~H~gs 216 (405)
.++++.++++.+++. ++ ..|+|+|--.
T Consensus 176 ~P~~v~~lv~~l~~~~~~-~l~~H~Hnd~ 203 (275)
T cd07937 176 TPYAAYELVKALKKEVGL-PIHLHTHDTS 203 (275)
T ss_pred CHHHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 677788888777653 43 4667777533
No 108
>PRK05660 HemN family oxidoreductase; Provisional
Probab=58.73 E-value=60 Score=32.35 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=35.1
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCC---cHHHHHHHHHcCC
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLPM-IHPHYAVKCNP---EPALLEALAALGS 98 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKaN~---~~~vl~~l~~~G~ 98 (405)
|| |. +++.+.|.+-++.+++.++- ...-.++=+|+ ..+.++.+.+.|+
T Consensus 67 Gt-Ps-~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv 118 (378)
T PRK05660 67 GT-PS-LFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGV 118 (378)
T ss_pred Cc-cc-cCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCC
Confidence 45 54 35678888888888888862 12346788887 5788999999984
No 109
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=58.58 E-value=1.2e+02 Score=29.11 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=31.0
Q ss_pred EEeHHHHHHHHHHHHHhCCCCceeeeeccCCc----HHHHHHHHHcCC-eEEE
Q 037610 55 LMDLGVVVSLYNHMISNLPMIHPHYAVKCNPE----PALLEALAALGS-NFDC 102 (405)
Q Consensus 55 v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~----~~vl~~l~~~G~-g~~v 102 (405)
.-+.+.+.+-++++++.. .+-..+|-++. .++++.+.+.|+ ++.+
T Consensus 139 ~~~~~~~~eiv~~vr~~~---~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 139 GTDPELAYEVVKAVKEVV---KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred ccCHHHHHHHHHHHHHhc---CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 345677778888888765 23345776653 577888899998 7766
No 110
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=58.22 E-value=2.3e+02 Score=29.25 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=23.3
Q ss_pred CCCCCCChhhHHHHHHHHHHc-CCeEEEEEEecCCC
Q 037610 183 KYGAGHHPQEIMPLLKAAEAS-GLSVVGVSFHVGSE 217 (405)
Q Consensus 183 rfGi~~~~~e~~~~~~~~~~~-~l~l~Gih~H~gs~ 217 (405)
-.|+- .+.++.++++.+++. ++. .++|+|--.+
T Consensus 175 t~G~l-~P~~v~~Lv~~lk~~~~vp-I~~H~Hnt~G 208 (467)
T PRK14041 175 MAGLL-TPKRAYELVKALKKKFGVP-VEVHSHCTTG 208 (467)
T ss_pred ccCCc-CHHHHHHHHHHHHHhcCCc-eEEEecCCCC
Confidence 34542 788899999988763 554 6889986554
No 111
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.19 E-value=1.2e+02 Score=28.77 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=26.7
Q ss_pred CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHH
Q 037610 98 SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (405)
+-+||.|.+|+..|.++|+ +.|.+.++ ++++++++++
T Consensus 185 I~VEv~tleea~~A~~~Ga--DiI~LDn~--~~e~l~~~v~ 221 (273)
T PRK05848 185 IEIECESLEEAKNAMNAGA--DIVMCDNM--SVEEIKEVVA 221 (273)
T ss_pred EEEEeCCHHHHHHHHHcCC--CEEEECCC--CHHHHHHHHH
Confidence 3678888888888888877 34666554 5777887776
No 112
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=58.12 E-value=46 Score=32.83 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=37.9
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC---cHHHHHHHHHcCC---eEEEcCH
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP---EPALLEALAALGS---NFDCGSR 105 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~---~~~vl~~l~~~G~---g~~vaS~ 105 (405)
|| |.. ++.+.+.+-++.+++.++ ....-.++=+|+ ..+.++.+.+.|+ .+.|-|.
T Consensus 60 Gt-Ps~-l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~ 121 (360)
T TIGR00539 60 GT-PNT-LSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSF 121 (360)
T ss_pred Cc-hhc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccC
Confidence 46 653 667788888888877764 222446788888 6789999999985 3445444
No 113
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=58.12 E-value=84 Score=29.56 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=20.2
Q ss_pred ChhhHHHHHHHHHHc-CC--eEEEEEEecCCC
Q 037610 189 HPQEIMPLLKAAEAS-GL--SVVGVSFHVGSE 217 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~l--~l~Gih~H~gs~ 217 (405)
.++++.++++.+++. .- -..|+|+|-.-+
T Consensus 170 ~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~G 201 (268)
T cd07940 170 TPEEFGELIKKLKENVPNIKVPISVHCHNDLG 201 (268)
T ss_pred CHHHHHHHHHHHHHhCCCCceeEEEEecCCcc
Confidence 788999999988763 21 246888886443
No 114
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=57.96 E-value=1.6e+02 Score=28.98 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=15.1
Q ss_pred ChhhHHHHHHHHHHcCCeEEEEEEecCC
Q 037610 189 HPQEIMPLLKAAEASGLSVVGVSFHVGS 216 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~~l~l~Gih~H~gs 216 (405)
+++++.++++.+.+.+.....|-=..|.
T Consensus 142 ~~e~l~~~a~~~~~~Ga~~i~i~DT~G~ 169 (337)
T PRK08195 142 PPEKLAEQAKLMESYGAQCVYVVDSAGA 169 (337)
T ss_pred CHHHHHHHHHHHHhCCCCEEEeCCCCCC
Confidence 4555555555555545555555555665
No 115
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=57.79 E-value=52 Score=32.65 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=35.7
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCC---cHHHHHHHHHcCC
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLPM-IHPHYAVKCNP---EPALLEALAALGS 98 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKaN~---~~~vl~~l~~~G~ 98 (405)
|| |. +++.+.|.+-++.+++.++- ...-+++-+|+ +.+.++.+.+.|+
T Consensus 60 Gt-pt-~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~ 111 (377)
T PRK08599 60 GT-PT-ALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGV 111 (377)
T ss_pred CC-cc-cCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCC
Confidence 45 55 46788999999999988751 11245677887 6899999999985
No 116
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.75 E-value=75 Score=29.00 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=55.6
Q ss_pred hCCCCceeeeeccCC---cHHHHHHHHHcCC-eEEEc--CH--HH-HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCC
Q 037610 71 NLPMIHPHYAVKCNP---EPALLEALAALGS-NFDCG--SR--SE-IEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGV 141 (405)
Q Consensus 71 ~~~~~~i~yavKaN~---~~~vl~~l~~~G~-g~~va--S~--~E-~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv 141 (405)
.+...++...+.... ..++++.+.+.|+ -+|+. +. .| ++.+++ .++ +-++-.|...++++.+.|++.|.
T Consensus 11 ~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~-~~p-~~~IGAGTVl~~~~a~~a~~aGA 88 (212)
T PRK05718 11 ILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAK-EVP-EALIGAGTVLNPEQLAQAIEAGA 88 (212)
T ss_pred HHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHH-HCC-CCEEEEeeccCHHHHHHHHHcCC
Confidence 333455666676665 5688888888888 67765 22 12 233333 354 56777889999999999999999
Q ss_pred cEEEecCHHHHHHHH
Q 037610 142 NLTTVDSVEELDKIR 156 (405)
Q Consensus 142 ~~i~vds~~el~~i~ 156 (405)
.+++.-..+. +.+.
T Consensus 89 ~FivsP~~~~-~vi~ 102 (212)
T PRK05718 89 QFIVSPGLTP-PLLK 102 (212)
T ss_pred CEEECCCCCH-HHHH
Confidence 8766666555 4443
No 117
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=57.35 E-value=1.7e+02 Score=27.48 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=73.8
Q ss_pred CCceeeeecc-CCc----------HHHHHHHHHcCC-eEEE--------cCHHHHHHHHhCCCCCCcEEEcCCCCCHHHH
Q 037610 74 MIHPHYAVKC-NPE----------PALLEALAALGS-NFDC--------GSRSEIEAVLLLDVSPDRIIYANPCKPVSHI 133 (405)
Q Consensus 74 ~~~i~yavKa-N~~----------~~vl~~l~~~G~-g~~v--------aS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l 133 (405)
+..+...+|. .|. ..+++...+.|+ ++-| .|.+.+..+++. ++.+ |+.-.-.-++.++
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~-v~iP-vl~kdfi~~~~qi 126 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-VSLP-VLRKDFIIDPYQI 126 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh-cCCC-EEeeeecCCHHHH
Confidence 3567778877 222 678888888898 8999 999999999886 4544 5544445567799
Q ss_pred HHHHHcCCcEEEec----CHHHHHHHHhHCC--CCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeE
Q 037610 134 KYAASVGVNLTTVD----SVEELDKIRNWHP--KSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSV 207 (405)
Q Consensus 134 ~~a~~~gv~~i~vd----s~~el~~i~~~~~--~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l 207 (405)
..+.+.|...+.++ +.++++.+.+... ...+.+-++ +.+|+.. +.+.+..+
T Consensus 127 ~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh-------------------~~~E~~~----A~~~gadi 183 (260)
T PRK00278 127 YEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVH-------------------DEEELER----ALKLGAPL 183 (260)
T ss_pred HHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeC-------------------CHHHHHH----HHHcCCCE
Confidence 99999997755444 3456666555433 233333343 3444433 33457889
Q ss_pred EEEE
Q 037610 208 VGVS 211 (405)
Q Consensus 208 ~Gih 211 (405)
.|++
T Consensus 184 Igin 187 (260)
T PRK00278 184 IGIN 187 (260)
T ss_pred EEEC
Confidence 9975
No 118
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=56.85 E-value=1.6e+02 Score=27.06 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=13.5
Q ss_pred CcHHHHHHHHHcCC-eEEEc
Q 037610 85 PEPALLEALAALGS-NFDCG 103 (405)
Q Consensus 85 ~~~~vl~~l~~~G~-g~~va 103 (405)
+..+.++.+++.|. |+|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~ 34 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYL 34 (254)
T ss_pred CHHHHHHHHHHcCCCEEEec
Confidence 46677777777777 77764
No 119
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=56.53 E-value=1.7e+02 Score=27.32 Aligned_cols=91 Identities=22% Similarity=0.155 Sum_probs=56.8
Q ss_pred CHHHHHHHHHcCCcEE-EecCHHHHHHH---HhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcC
Q 037610 129 PVSHIKYAASVGVNLT-TVDSVEELDKI---RNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASG 204 (405)
Q Consensus 129 ~~~~l~~a~~~gv~~i-~vds~~el~~i---~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~ 204 (405)
..++++.+.+.|+..+ .+.+.++...+ .+..++....++++.... + .. +++.+.++++.+.+.+
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~--------~--~~--~~~~~~~~~~~~~~~G 154 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMS--------H--MA--SPEELAEQAKLMESYG 154 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEec--------c--CC--CHHHHHHHHHHHHHcC
Confidence 3688999999888743 23445444433 333444455566664210 1 24 7888888888887778
Q ss_pred CeEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 037610 205 LSVVGVSFHVGSEATNFAAFRGAIAAAKA 233 (405)
Q Consensus 205 l~l~Gih~H~gs~~~~~~~~~~~i~~~~~ 233 (405)
.....|-=.+|.. .+....+.++.+++
T Consensus 155 ~d~i~l~DT~G~~--~P~~v~~lv~~l~~ 181 (263)
T cd07943 155 ADCVYVTDSAGAM--LPDDVRERVRALRE 181 (263)
T ss_pred CCEEEEcCCCCCc--CHHHHHHHHHHHHH
Confidence 8888888889985 45555555554443
No 120
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=56.11 E-value=1.7e+02 Score=27.06 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=9.4
Q ss_pred CHHHHHHHHHcCCcEEEec
Q 037610 129 PVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 129 ~~~~l~~a~~~gv~~i~vd 147 (405)
++++++.+++.|+.-|..|
T Consensus 241 ~~~~~~~~~~~Gvdgi~TD 259 (263)
T cd08567 241 DPEDMARLIDLGVDGIITD 259 (263)
T ss_pred CHHHHHHHHHcCCCEEEcC
Confidence 3455555555555433333
No 121
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=55.61 E-value=98 Score=29.75 Aligned_cols=94 Identities=10% Similarity=0.159 Sum_probs=55.5
Q ss_pred CCCCcEEEcCCCC-CHHHHHHHHHcCCcEEEecCHHHH------HHHHhHCC--CCeEEEEEecCCCCCCC----CCCCC
Q 037610 116 VSPDRIIYANPCK-PVSHIKYAASVGVNLTTVDSVEEL------DKIRNWHP--KSDLLIRIKSPDDSGAK----YPLDS 182 (405)
Q Consensus 116 ~~~~~Ii~~gp~k-~~~~l~~a~~~gv~~i~vds~~el------~~i~~~~~--~~~v~lRi~~~~~~~~~----~~~~s 182 (405)
++++++++.|--- ++++.+.+.+.|+.++..+.+.+. +++.+..+ +..+.|-+..+.- ... ..+-.
T Consensus 163 ~~~~~~v~iGiR~~~~~e~~~~~~~gi~~~~~~~i~~~g~~~v~~~~~~~l~~~~~~vyvS~DiDvl-Dps~aPgv~tp~ 241 (300)
T TIGR01229 163 ISPKNLVYIGLRSVDPGERKILKELGIKVFSMHEIDELGIGKVVEETLEYLKAEDGPIHLSLDVDGL-DPSLAPATGTPV 241 (300)
T ss_pred cCcccEEEEecCCCChHHHHHHHHcCCeEEEHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEEecccc-CcccCCCCCCCC
Confidence 4566788877633 678888888999876555544331 22222221 1245665554431 111 22336
Q ss_pred CCCCCCChhhHHHHHHHHHHcCCeEEEEEEe
Q 037610 183 KYGAGHHPQEIMPLLKAAEASGLSVVGVSFH 213 (405)
Q Consensus 183 rfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H 213 (405)
..|+ +..|+..+++.+... -+++|+-+-
T Consensus 242 pgGl--~~~e~~~~l~~i~~~-~~v~g~Div 269 (300)
T TIGR01229 242 VGGL--TFREGLLIMEMLYET-GLLTALDVV 269 (300)
T ss_pred CCCC--CHHHHHHHHHHHHhc-CCEEEEEEE
Confidence 7899 999999999887543 245665543
No 122
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=55.50 E-value=45 Score=29.26 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC---eEEEcCHHHHHHHHh---CCCCCCcEEEcCCCCCHHHHH
Q 037610 61 VVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGS---NFDCGSRSEIEAVLL---LDVSPDRIIYANPCKPVSHIK 134 (405)
Q Consensus 61 l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~---g~~vaS~~E~~~a~~---~G~~~~~Ii~~gp~k~~~~l~ 134 (405)
+.+-++++++..|.... --|-+....++.+ +.+.|+ -+|-.|+++++.+.+ ...+.-.|..+|. .+.+.+.
T Consensus 66 i~~av~~~~~~~~~~~~-I~VEv~~~ee~~e-a~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGG-I~~~ni~ 142 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKK-IEVEVENLEEAEE-ALEAGADIIMLDNMSPEDLKEAVEELRELNPRVKIEASGG-ITLENIA 142 (169)
T ss_dssp HHHHHHHHHHHSTTTSE-EEEEESSHHHHHH-HHHTT-SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEESS-SSTTTHH
T ss_pred HHHHHHHHHHhCCCCce-EEEEcCCHHHHHH-HHHhCCCEEEecCcCHHHHHHHHHHHhhcCCcEEEEEECC-CCHHHHH
Confidence 45677777877775431 3466666555444 334453 577788888877776 3222234555554 4677777
Q ss_pred HHHHcCCcEEEecCH
Q 037610 135 YAASVGVNLTTVDSV 149 (405)
Q Consensus 135 ~a~~~gv~~i~vds~ 149 (405)
...+.|+..+.+.++
T Consensus 143 ~ya~~gvD~isvg~~ 157 (169)
T PF01729_consen 143 EYAKTGVDVISVGSL 157 (169)
T ss_dssp HHHHTT-SEEEECHH
T ss_pred HHHhcCCCEEEcChh
Confidence 777888776666553
No 123
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=54.94 E-value=2.2e+02 Score=27.94 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=20.5
Q ss_pred ChhhHHHHHHHHHHc-C--CeEEEEEEecCCC
Q 037610 189 HPQEIMPLLKAAEAS-G--LSVVGVSFHVGSE 217 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~--l~l~Gih~H~gs~ 217 (405)
.++++.++++.+++. + + -.|+|+|-.-+
T Consensus 170 ~P~~v~~~v~~l~~~l~~~i-~ig~H~HnnlG 200 (333)
T TIGR03217 170 LPDDVRDRVRALKAVLKPET-QVGFHAHHNLS 200 (333)
T ss_pred CHHHHHHHHHHHHHhCCCCc-eEEEEeCCCCc
Confidence 788999999888763 3 4 46899986443
No 124
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=54.65 E-value=67 Score=32.89 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=56.8
Q ss_pred EeHHHHHHHHHHHHHhCC-CCceeeeeccCC---cHHHHHHHHHcCC-e--EEEcCHHH------------------HHH
Q 037610 56 MDLGVVVSLYNHMISNLP-MIHPHYAVKCNP---EPALLEALAALGS-N--FDCGSRSE------------------IEA 110 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~---~~~vl~~l~~~G~-g--~~vaS~~E------------------~~~ 110 (405)
++.+.+.+-++.+++.++ ....-+++=+|+ +.+.++.|.+.|+ . +.|-|..+ ++.
T Consensus 117 l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~ 196 (453)
T PRK13347 117 LNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVEL 196 (453)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 568899999999998875 222345677887 6899999999996 3 33333322 234
Q ss_pred HHhCCCCC--CcEEEcCCCCCHHHH----HHHHHcCCcEEEecC
Q 037610 111 VLLLDVSP--DRIIYANPCKPVSHI----KYAASVGVNLTTVDS 148 (405)
Q Consensus 111 a~~~G~~~--~~Ii~~gp~k~~~~l----~~a~~~gv~~i~vds 148 (405)
++++|++. -.++|.-|.-+.+++ +.+++.++..+.+-+
T Consensus 197 lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~ 240 (453)
T PRK13347 197 LRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFG 240 (453)
T ss_pred HHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 45567641 135666666665543 333445555444443
No 125
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=53.95 E-value=1.4e+02 Score=28.36 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=30.3
Q ss_pred EEEeHHHHHHHHHHHHHhCCCCceeeeeccCCc----HHHHHHHHHcCC-eEEE
Q 037610 54 YLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPE----PALLEALAALGS-NFDC 102 (405)
Q Consensus 54 ~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~----~~vl~~l~~~G~-g~~v 102 (405)
+.-+.+.+.+-++++++.. .+-..+|-.+. .++++.+.+.|+ ++.+
T Consensus 135 ~~~~~~~~~eiv~~vr~~~---~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 135 FGTDPEAVAEIVKAVKKAT---DVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred ccCCHHHHHHHHHHHHhcc---CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 4456677777788887764 22344676553 467888888887 6665
No 126
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=52.86 E-value=88 Score=31.71 Aligned_cols=99 Identities=17% Similarity=0.255 Sum_probs=66.1
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC--CCceeeeeccCC---cHHHHHHHHHcCC---eEEEcCHHH-------------
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLP--MIHPHYAVKCNP---EPALLEALAALGS---NFDCGSRSE------------- 107 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKaN~---~~~vl~~l~~~G~---g~~vaS~~E------------- 107 (405)
|| |. .++.+.|++-+..+++.++ ....-.++-+|| ..+-++.+.+.|+ .+.|-|.++
T Consensus 96 GT-Ps-lL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~ 173 (416)
T COG0635 96 GT-PS-LLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEE 173 (416)
T ss_pred Cc-cc-cCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHH
Confidence 56 65 3788899999999999884 333567899999 5788999999996 577766543
Q ss_pred -----HHHHHhCCCCCC--cEEEcCCCCCH----HHHHHHHHcCCcEEEecCH
Q 037610 108 -----IEAVLLLDVSPD--RIIYANPCKPV----SHIKYAASVGVNLTTVDSV 149 (405)
Q Consensus 108 -----~~~a~~~G~~~~--~Ii~~gp~k~~----~~l~~a~~~gv~~i~vds~ 149 (405)
+..+++.||+.= .+||.=|.-|. ++++.|++.+...+++-++
T Consensus 174 ~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L 226 (416)
T COG0635 174 EAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSL 226 (416)
T ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeee
Confidence 334455566432 35666666553 3555566666655555443
No 127
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=52.44 E-value=46 Score=28.38 Aligned_cols=68 Identities=12% Similarity=0.034 Sum_probs=45.2
Q ss_pred CCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHH---------HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCc
Q 037610 74 MIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSE---------IEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVN 142 (405)
Q Consensus 74 ~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E---------~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~ 142 (405)
++++.|.==--+-.++++.+.+..+ .+.++|.+. .+.+++.|... .+++.|+.+++++++...++|+.
T Consensus 40 GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~-i~v~~GGvip~~d~~~l~~~G~~ 117 (143)
T COG2185 40 GFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVED-ILVVVGGVIPPGDYQELKEMGVD 117 (143)
T ss_pred CceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcc-eEEeecCccCchhHHHHHHhCcc
Confidence 4554443222223567777777776 677777654 46677888743 34488888999999988889875
No 128
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.25 E-value=1.6e+02 Score=28.04 Aligned_cols=18 Identities=0% Similarity=0.176 Sum_probs=9.1
Q ss_pred eEEEcCHHHHHHHHhCCC
Q 037610 99 NFDCGSRSEIEAVLLLDV 116 (405)
Q Consensus 99 g~~vaS~~E~~~a~~~G~ 116 (405)
|++|.|.+|+..+.+.|.
T Consensus 192 gvsv~tleea~~A~~~ga 209 (277)
T PRK08072 192 EVETETEEQVREAVAAGA 209 (277)
T ss_pred EEEeCCHHHHHHHHHcCC
Confidence 455555555555554443
No 129
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=51.71 E-value=1e+02 Score=30.69 Aligned_cols=56 Identities=20% Similarity=0.318 Sum_probs=41.2
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCCC-ceeeeeccCC---cHHHHHHHHHcCC---eEEEcCHH
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLPMI-HPHYAVKCNP---EPALLEALAALGS---NFDCGSRS 106 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~~~-~i~yavKaN~---~~~vl~~l~~~G~---g~~vaS~~ 106 (405)
|| |. +++.+.|++-++.+++.++-. ..-.++=+|| ..+-++.+.+.|+ .+.|-|.+
T Consensus 64 GT-Ps-~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~ 126 (380)
T PRK09057 64 GT-PS-LMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALN 126 (380)
T ss_pred Cc-cc-cCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCC
Confidence 57 76 688999999999999988622 1235677888 5688999999995 45555554
No 130
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=51.18 E-value=1.8e+02 Score=25.87 Aligned_cols=82 Identities=11% Similarity=0.094 Sum_probs=46.7
Q ss_pred cHHHHHHHHHc--CC--eEE--EcCHH--HHHHHHhCCCCCCcEEEcCCCC---CHHHHHHHHHcCCcEE-EecCH----
Q 037610 86 EPALLEALAAL--GS--NFD--CGSRS--EIEAVLLLDVSPDRIIYANPCK---PVSHIKYAASVGVNLT-TVDSV---- 149 (405)
Q Consensus 86 ~~~vl~~l~~~--G~--g~~--vaS~~--E~~~a~~~G~~~~~Ii~~gp~k---~~~~l~~a~~~gv~~i-~vds~---- 149 (405)
...+++.+.+. +. .+| +..++ +++.+.++|.+ -|++.+-.. ..+.++.+.++|+..+ .+-+.
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad--~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~ 116 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGAD--IVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKV 116 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCC--EEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChH
Confidence 46778888776 32 444 44655 78889999963 455544321 1455666678887532 22232
Q ss_pred HHHHHHHhHCCCCeEEEEEecCC
Q 037610 150 EELDKIRNWHPKSDLLIRIKSPD 172 (405)
Q Consensus 150 ~el~~i~~~~~~~~v~lRi~~~~ 172 (405)
++++.+.+.+. . .+.++|+.
T Consensus 117 ~~~~~~~~~g~--d-~v~~~pg~ 136 (206)
T TIGR03128 117 KRAKELKELGA--D-YIGVHTGL 136 (206)
T ss_pred HHHHHHHHcCC--C-EEEEcCCc
Confidence 55555554433 2 45666654
No 131
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=51.03 E-value=1.6e+02 Score=29.27 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=52.2
Q ss_pred HHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-eEEEcC------------HHHHHHHHhCCCCCCcEEEcCCCCCH
Q 037610 64 LYNHMISNLPMIHPHYAVKCNPEPALLEALAALGS-NFDCGS------------RSEIEAVLLLDVSPDRIIYANPCKPV 130 (405)
Q Consensus 64 n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS------------~~E~~~a~~~G~~~~~Ii~~gp~k~~ 130 (405)
+++.+++..+ +-..+|--..++.++.+.+.|+ +++|+. .+.+..++++--..-.|+.+|...+.
T Consensus 219 ~i~~l~~~~~---~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g 295 (367)
T TIGR02708 219 DIEEIAGYSG---LPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRG 295 (367)
T ss_pred HHHHHHHhcC---CCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCH
Confidence 4555555432 2345887778888999999998 787765 33344443331011248888888888
Q ss_pred HHHHHHHHcCCcEEEec
Q 037610 131 SHIKYAASVGVNLTTVD 147 (405)
Q Consensus 131 ~~l~~a~~~gv~~i~vd 147 (405)
.++..|+..|...+.+.
T Consensus 296 ~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 296 QHVFKALASGADLVALG 312 (367)
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 88888888888754443
No 132
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=50.97 E-value=82 Score=28.64 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCC--eEEEcCHHHHHHHHhCCCCCCcEE------EcC-CCC----CHHHHHHHHHcCCcEE---EecCHH
Q 037610 87 PALLEALAALGS--NFDCGSRSEIEAVLLLDVSPDRII------YAN-PCK----PVSHIKYAASVGVNLT---TVDSVE 150 (405)
Q Consensus 87 ~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii------~~g-p~k----~~~~l~~a~~~gv~~i---~vds~~ 150 (405)
.++++.....|+ -+||+|.+|...|.++||+ |+ |++ +.+ +-..++.+.+.|+.+| .++|.+
T Consensus 117 ~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D---~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~ 193 (229)
T COG3010 117 EELIARIKYPGQLAMADCSTFEEGLNAHKLGFD---IIGTTLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPE 193 (229)
T ss_pred HHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCc---EEecccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHH
Confidence 345555445565 7999999999999999984 32 333 111 2345666667887544 367888
Q ss_pred HHHHHHhHCC
Q 037610 151 ELDKIRNWHP 160 (405)
Q Consensus 151 el~~i~~~~~ 160 (405)
+..+..+++-
T Consensus 194 ~Ak~a~~~Ga 203 (229)
T COG3010 194 QAKKAIEIGA 203 (229)
T ss_pred HHHHHHHhCC
Confidence 8888777653
No 133
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=50.86 E-value=1.7e+02 Score=27.95 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=31.6
Q ss_pred EEEeHHHHHHHHHHHHHhCCCCceeeeeccCCc----HHHHHHHHHcCC-eEEEc
Q 037610 54 YLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPE----PALLEALAALGS-NFDCG 103 (405)
Q Consensus 54 ~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~----~~vl~~l~~~G~-g~~va 103 (405)
+.-|.+.+.+-++++++... +--.+|-.+. .++++.+.+.|+ ++.+.
T Consensus 138 l~~~~~~~~eiv~~vr~~~~---~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 138 IGQDPELSADVVKAVKDKTD---VPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred cccCHHHHHHHHHHHHHhcC---CCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 45677777888888877642 2345676643 577888888888 67663
No 134
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=50.83 E-value=2e+02 Score=27.57 Aligned_cols=27 Identities=7% Similarity=0.203 Sum_probs=13.4
Q ss_pred EEEcCCCCCHHHHHHHHHcCCcEEEec
Q 037610 121 IIYANPCKPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 121 Ii~~gp~k~~~~l~~a~~~gv~~i~vd 147 (405)
|+.+|...+..++..++..|+..+.+-
T Consensus 230 via~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 230 VLLDGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 444555555555555555555433333
No 135
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=50.59 E-value=2.6e+02 Score=27.64 Aligned_cols=131 Identities=19% Similarity=0.249 Sum_probs=68.9
Q ss_pred cHHHHHHHHHcCC-eEEE----cCHHHHHH---HHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEE-ecCHH------
Q 037610 86 EPALLEALAALGS-NFDC----GSRSEIEA---VLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTT-VDSVE------ 150 (405)
Q Consensus 86 ~~~vl~~l~~~G~-g~~v----aS~~E~~~---a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~-vds~~------ 150 (405)
-..+++.|.+.|+ .+|| +|..|.+. +.+.+-+ .++.-.... ..++++.|++.|+..+. +.+.+
T Consensus 25 k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~-~~i~~~~r~-~~~di~~a~~~g~~~i~i~~~~Sd~~~~~ 102 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLP-ARLMAWCRA-RDADIEAAARCGVDAVHISIPVSDLQIEA 102 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCC-cEEEEEcCC-CHHHHHHHHcCCcCEEEEEEccCHHHHHH
Confidence 3567777777776 5666 34444322 2233222 233332322 36677777777664322 22222
Q ss_pred -----------HHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCC
Q 037610 151 -----------ELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEAT 219 (405)
Q Consensus 151 -----------el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~ 219 (405)
.+....+.+++....+++++... +| . +++.+.++++.+.+.+.....|.=..|..
T Consensus 103 ~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~--------~r--~--~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~-- 168 (365)
T TIGR02660 103 KLRKDRAWVLERLARLVSFARDRGLFVSVGGEDA--------SR--A--DPDFLVELAEVAAEAGADRFRFADTVGIL-- 168 (365)
T ss_pred HhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCC--------CC--C--CHHHHHHHHHHHHHcCcCEEEEcccCCCC--
Confidence 12222223344444556654321 22 3 66777788877777777778888888874
Q ss_pred CHHHHHHHHHHHH
Q 037610 220 NFAAFRGAIAAAK 232 (405)
Q Consensus 220 ~~~~~~~~i~~~~ 232 (405)
.+..+.+.++.+.
T Consensus 169 ~P~~v~~lv~~l~ 181 (365)
T TIGR02660 169 DPFSTYELVRALR 181 (365)
T ss_pred CHHHHHHHHHHHH
Confidence 4555555554443
No 136
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.19 E-value=2e+02 Score=26.18 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=28.7
Q ss_pred EcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcE-EEecCHHHHHHHHhH
Q 037610 102 CGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNL-TTVDSVEELDKIRNW 158 (405)
Q Consensus 102 vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~-i~vds~~el~~i~~~ 158 (405)
|-+.++++.+.++|. +.++ .|+.+++-++.+.++|+.+ .-+-+.+|+....+.
T Consensus 75 V~~~~~~~~a~~aGA---~Fiv-sP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~ 128 (213)
T PRK06552 75 VLDAVTARLAILAGA---QFIV-SPSFNRETAKICNLYQIPYLPGCMTVTEIVTALEA 128 (213)
T ss_pred CCCHHHHHHHHHcCC---CEEE-CCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHc
Confidence 445566666666664 2343 4555666666666666542 244556665555443
No 137
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=49.86 E-value=1.6e+02 Score=25.41 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=36.7
Q ss_pred cCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCc--EEEec-----------------CHHHHHHHH
Q 037610 96 LGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVN--LTTVD-----------------SVEELDKIR 156 (405)
Q Consensus 96 ~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~--~i~vd-----------------s~~el~~i~ 156 (405)
.|+.+.+.|.+|+...++......++++. .|+++++.++++.|+. .+++. |.+|++.+.
T Consensus 54 ~gvk~~i~sv~~a~~~l~~~~~~~~v~il--~k~~~d~~~l~~~g~~i~~iNvG~~~~~~g~~~i~~~v~l~~~e~~~lk 131 (157)
T PRK11425 54 EGIAVRFWTLQKVIDNIHRAADRQKILLV--CKTPADFLTLVKGGVPVNRINVGNMHYANGKQQIAKTVSVDAGDIAAFN 131 (157)
T ss_pred CCCeEEEEEHHHHHHHHhccCCCceEEEE--ECCHHHHHHHHHcCCCCCEEEECCcccCCCCEEEecceeeCHHHHHHHH
Confidence 44555555555555444432332333332 2344555555554432 22322 456666666
Q ss_pred hHC-CCCeEEEEEecCC
Q 037610 157 NWH-PKSDLLIRIKSPD 172 (405)
Q Consensus 157 ~~~-~~~~v~lRi~~~~ 172 (405)
++. ...++-+|.-|+.
T Consensus 132 ~l~~~Gv~v~~q~vP~d 148 (157)
T PRK11425 132 DLKAAGVECFVQGVPTE 148 (157)
T ss_pred HHHHcCCEEEEEECcCC
Confidence 653 3567777777643
No 138
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=49.72 E-value=2.2e+02 Score=26.53 Aligned_cols=131 Identities=21% Similarity=0.288 Sum_probs=72.5
Q ss_pred cHHHHHHHHHcCC-eEEEcCH----HH---HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEe-cCHH------
Q 037610 86 EPALLEALAALGS-NFDCGSR----SE---IEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTV-DSVE------ 150 (405)
Q Consensus 86 ~~~vl~~l~~~G~-g~~vaS~----~E---~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~v-ds~~------ 150 (405)
-..+++.|.+.|+ .+||..+ .| ++.+.+.+ ...++.-.... ..++++.|.+.|+..+.+ .+.+
T Consensus 22 k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~-~~~~~~~~~r~-~~~~v~~a~~~g~~~i~i~~~~s~~~~~~ 99 (259)
T cd07939 22 KLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALG-LPARLIVWCRA-VKEDIEAALRCGVTAVHISIPVSDIHLAH 99 (259)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEeccC-CHHHHHHHHhCCcCEEEEEEecCHHHHHH
Confidence 3466777777776 6666432 22 33333333 22333333322 466777777777664433 1222
Q ss_pred -----------HHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCC
Q 037610 151 -----------ELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEAT 219 (405)
Q Consensus 151 -----------el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~ 219 (405)
.+....+.+++..+.+++++... +| . +++.+.++++.+.+.+.+...|-=..|..
T Consensus 100 ~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~--------~~--~--~~~~~~~~~~~~~~~G~~~i~l~DT~G~~-- 165 (259)
T cd07939 100 KLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDA--------SR--A--DPDFLIEFAEVAQEAGADRLRFADTVGIL-- 165 (259)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccC--------CC--C--CHHHHHHHHHHHHHCCCCEEEeCCCCCCC--
Confidence 22223333444455566665331 23 4 78888888888877788888888889985
Q ss_pred CHHHHHHHHHHHH
Q 037610 220 NFAAFRGAIAAAK 232 (405)
Q Consensus 220 ~~~~~~~~i~~~~ 232 (405)
.+....+.+..++
T Consensus 166 ~P~~v~~lv~~l~ 178 (259)
T cd07939 166 DPFTTYELIRRLR 178 (259)
T ss_pred CHHHHHHHHHHHH
Confidence 3554444444433
No 139
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=49.09 E-value=1.1e+02 Score=28.57 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=41.7
Q ss_pred cCCcHHHHHHHHHcCCeE------------EEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEec
Q 037610 83 CNPEPALLEALAALGSNF------------DCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 83 aN~~~~vl~~l~~~G~g~------------~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vd 147 (405)
|+.++..++.+.+.|+.+ .+..++-++.+++. .+- .++..|...++++...|++.|+.-+.+.
T Consensus 130 c~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~-~~v-pVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 130 CTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIER-ADV-PVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred eCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-CCC-cEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 567788888888887532 22344555656654 222 3777777888888888888887644443
No 140
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=48.73 E-value=1.7e+02 Score=25.03 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCeEEEcCHHHHHHHHhCC-CCCCcEEEcCCCCCHHHHHHHHHcCCc--EEEecC----------------
Q 037610 88 ALLEALAALGSNFDCGSRSEIEAVLLLD-VSPDRIIYANPCKPVSHIKYAASVGVN--LTTVDS---------------- 148 (405)
Q Consensus 88 ~vl~~l~~~G~g~~vaS~~E~~~a~~~G-~~~~~Ii~~gp~k~~~~l~~a~~~gv~--~i~vds---------------- 148 (405)
.+++...-.|+.+.+-|.+|+...++.+ .+..++++. +++++++..+++.|+. .+++.+
T Consensus 44 ~~lkma~P~gvk~~i~sve~a~~~l~~~~~~~~~v~vl--~k~~~da~~l~~~g~~i~~iniG~~~~~~g~~~v~~~v~l 121 (151)
T TIGR00854 44 TLMGIVAPTGFKVRFVSLEKTINVIHKPAYHDQTIFLL--FRNPQDVLTLVEGGVPIKTVNVGGMHFSNGKKQITKKVSV 121 (151)
T ss_pred HHHHhhCCCCCEEEEEEHHHHHHHHhCcCCCCceEEEE--ECCHHHHHHHHHcCCCCCEEEECCcccCCCCEEEecceee
Confidence 3444444456777777777777666653 233445443 3566777777776653 344433
Q ss_pred -HHHHHHHHhHC-CCCeEEEEEecC
Q 037610 149 -VEELDKIRNWH-PKSDLLIRIKSP 171 (405)
Q Consensus 149 -~~el~~i~~~~-~~~~v~lRi~~~ 171 (405)
.+|++.+.++. ...++-+|.-|+
T Consensus 122 ~~~e~~~l~~l~~~Gv~v~~q~vP~ 146 (151)
T TIGR00854 122 DDQDITAFRFLKQRGVKLFLRDVPS 146 (151)
T ss_pred CHHHHHHHHHHHHcCCEEEEEECcC
Confidence 56666666652 456677777664
No 141
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=48.43 E-value=1.5e+02 Score=29.31 Aligned_cols=66 Identities=14% Similarity=0.292 Sum_probs=38.5
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCH-HHH-----HHHHHHHHHHHHHH
Q 037610 165 LIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNF-AAF-----RGAIAAAKAVFDTA 238 (405)
Q Consensus 165 ~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~-~~~-----~~~i~~~~~~~~~~ 238 (405)
.|||||+. +|- ..+.+.++++.+++.++- ..|-...||-..+. +.| ...++.+.+.++.+
T Consensus 104 ~iRINPGN-----------ig~--~~~~v~~vv~~ak~~~ip-IRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~l 169 (360)
T PRK00366 104 ALRINPGN-----------IGK--RDERVREVVEAAKDYGIP-IRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKIL 169 (360)
T ss_pred EEEECCCC-----------CCc--hHHHHHHHHHHHHHCCCC-EEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 46888754 243 467788888888887654 33556666632111 111 12345555666777
Q ss_pred HhCCCC
Q 037610 239 ARTSNN 244 (405)
Q Consensus 239 ~~~G~~ 244 (405)
+++||+
T Consensus 170 e~~~f~ 175 (360)
T PRK00366 170 EELGFD 175 (360)
T ss_pred HHCCCC
Confidence 888863
No 142
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=48.37 E-value=2.3e+02 Score=26.40 Aligned_cols=103 Identities=9% Similarity=-0.004 Sum_probs=57.5
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCC---CceeeeeccCCc---HHHHHHHHHcCC-eEEEc----CHHHHHHHHhCCCC
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLPM---IHPHYAVKCNPE---PALLEALAALGS-NFDCG----SRSEIEAVLLLDVS 117 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~~---~~i~yavKaN~~---~~vl~~l~~~G~-g~~va----S~~E~~~a~~~G~~ 117 (405)
.. .+++.+.+. .+.++++++..|+ +.+.|-+..... ....+.+...|+ ++... +..=++.+.+.|..
T Consensus 148 ~~-~v~i~SF~~-~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~Gl~ 225 (265)
T cd08564 148 IL-QVHFSSFLH-YDRLDLLKALRPNKLNVPIALLFNEVKSPSPLDFLEQAKYYNATWVNFSYDFWTEEFVKKAHENGLK 225 (265)
T ss_pred CC-CEEEEecCc-hhHHHHHHHhCcCCCCceEEEEecCCCCcccccHHHHHHhcCCceeeechhhhhHHHHHHHHHcCCE
Confidence 35 666644433 2333455665665 666666654331 234445555554 44432 33334566777763
Q ss_pred CCcEEEcC-C-CCCHHHHHHHHHcCCcEEEecCHHHHHHH
Q 037610 118 PDRIIYAN-P-CKPVSHIKYAASVGVNLTTVDSVEELDKI 155 (405)
Q Consensus 118 ~~~Ii~~g-p-~k~~~~l~~a~~~gv~~i~vds~~el~~i 155 (405)
-.+++. + ..+.++++.+++.|+.-+..|-.+.+..+
T Consensus 226 --v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD~p~~~~~~ 263 (265)
T cd08564 226 --VMTYFDEPVNDNEEDYKVYLELGVDCICPNDPVLLVNF 263 (265)
T ss_pred --EEEecCCCCCCCHHHHHHHHHcCCCEEEcCCHHHHHHh
Confidence 355651 1 34578888888999887777777765543
No 143
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=48.23 E-value=2.3e+02 Score=26.24 Aligned_cols=89 Identities=15% Similarity=0.042 Sum_probs=56.2
Q ss_pred EEEEeHHHHHHHHHHHHHhCCCCceeeeeccCC------cHHHHHHHHHcCC-eEEEcC---------HHHHHHHHhCCC
Q 037610 53 FYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNP------EPALLEALAALGS-NFDCGS---------RSEIEAVLLLDV 116 (405)
Q Consensus 53 ~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~------~~~vl~~l~~~G~-g~~vaS---------~~E~~~a~~~G~ 116 (405)
.++-|++.+.+-++.+++. +.-+ .+|--+ ...+++.+.+.|+ ++.|.. ..-+..+++. +
T Consensus 115 ~Ll~dp~~l~~iv~av~~~--~~PV--svKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~-~ 189 (231)
T TIGR00736 115 ELLKNKELLKEFLTKMKEL--NKPI--FVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEE-F 189 (231)
T ss_pred hhcCCHHHHHHHHHHHHcC--CCcE--EEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHh-c
Confidence 4667999999999998843 2222 244332 3588999999998 665522 2223333332 2
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHcCCcEEEe
Q 037610 117 SPDRIIYANPCKPVSHIKYAASVGVNLTTV 146 (405)
Q Consensus 117 ~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~v 146 (405)
+.-.|+-+|...+.++..++++.|+.-+.+
T Consensus 190 ~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 190 NDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 212377788888888888888888764444
No 144
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=47.73 E-value=2.2e+02 Score=26.94 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCcEEEecCHHHHHHHHhHC-CCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEE
Q 037610 130 VSHIKYAASVGVNLTTVDSVEELDKIRNWH-PKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVV 208 (405)
Q Consensus 130 ~~~l~~a~~~gv~~i~vds~~el~~i~~~~-~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~ 208 (405)
+.-++.+.+.|+. .+.-..-.++.+.+.+ .+..+.++++..... .... .-.....+.++++ ..+..-+
T Consensus 46 e~~v~~v~~~g~d-av~~~~G~~~~~~~~y~~dvplivkl~~~t~l----~~~~--~~~~~~~~ve~ai----~lgadAV 114 (265)
T COG1830 46 ENIVAKVAEAGAD-AVAMTPGIARSVHRGYAHDVPLIVKLNGSTSL----SPDP--NDQVLVATVEDAI----RLGADAV 114 (265)
T ss_pred HHHHHHHHhcCCC-EEEecHhHHhhcCccccCCcCEEEEecccccc----CCCc--ccceeeeeHHHHH----hCCCcEE
Confidence 4455666778887 4667788888777654 478899999854221 1111 1100111222222 3577788
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 037610 209 GVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSN 243 (405)
Q Consensus 209 Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~ 243 (405)
|.|..+||... .++++.+.++++.+.++|+
T Consensus 115 ~~~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gm 144 (265)
T COG1830 115 GATVYVGSETE-----REMIENISQVVEDAHELGM 144 (265)
T ss_pred EEEEecCCcch-----HHHHHHHHHHHHHHHHcCC
Confidence 88888998642 4567777888888888887
No 145
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=47.48 E-value=3.1e+02 Score=28.39 Aligned_cols=107 Identities=11% Similarity=0.033 Sum_probs=74.3
Q ss_pred CcHHHHHHHHHhhcCCCCCccEEEEeH-----HHHHHHHHHHHHhCCCCceeeeeccC-CcHHHHHHHHHcCC-eEE---
Q 037610 32 DELTEFMQSTILKRQEFDEVPFYLMDL-----GVVVSLYNHMISNLPMIHPHYAVKCN-PEPALLEALAALGS-NFD--- 101 (405)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~t~P~~v~d~-----~~l~~n~~~~~~~~~~~~i~yavKaN-~~~~vl~~l~~~G~-g~~--- 101 (405)
.+..+.++.++.. +- ...++|. ..+.+.++++++.+|++.++. -| ...+-++.|.+.|+ ++.
T Consensus 224 ~~~~~ra~~Lv~a----GV-d~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~---g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 224 GDVGGKAKALLDA----GV-DVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA---GNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred ccHHHHHHHHHHh----CC-CEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE---eccCCHHHHHHHHHhCCCEEEECC
Confidence 5677788887754 33 4555554 356777888998888766554 43 36788888999998 676
Q ss_pred -----EcC-------------HHHH-HHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCH
Q 037610 102 -----CGS-------------RSEI-EAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSV 149 (405)
Q Consensus 102 -----vaS-------------~~E~-~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~ 149 (405)
|.+ ..|+ +.+.+.|+ .|+-.|..+++.++..|+..|...+.+.++
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~---~viadGgi~~~~di~kala~GA~~vm~g~~ 359 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGG---HVWADGGVRHPRDVALALAAGASNVMVGSW 359 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHHHHHHcCC---cEEEeCCCCCHHHHHHHHHcCCCEEeechh
Confidence 322 1233 22344454 488899999999999999999887777654
No 146
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=47.42 E-value=62 Score=32.26 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhcCCCCCccEEEE-------eHHHHHHHHHHHHHhCCCCceeeeeccC-CcHHHHHHHHHcCCeEEEcCH
Q 037610 34 LTEFMQSTILKRQEFDEVPFYLM-------DLGVVVSLYNHMISNLPMIHPHYAVKCN-PEPALLEALAALGSNFDCGSR 105 (405)
Q Consensus 34 ~~~~~~~~~~~~~~~~t~P~~v~-------d~~~l~~n~~~~~~~~~~~~i~yavKaN-~~~~vl~~l~~~G~g~~vaS~ 105 (405)
...+++.++. ..+- |+.+. |.+.++.-++..+.. + -+.|+.-.. ....+++++.++|+.+-+.|+
T Consensus 176 ~a~~vk~V~~---av~v-PLIL~gsg~~~kD~eVLeaaLe~~~G~--k-pLL~SAt~e~Ny~~ia~lAk~yg~~Vvv~s~ 248 (389)
T TIGR00381 176 AAKVLEDVLQ---AVDV-PIVIGGSGNPEKDPLVLEKAAEVAEGE--R-CLLASANLDLDYEKIANAAKKYGHVVLSWTI 248 (389)
T ss_pred HHHHHHHHHH---hCCC-CEEEeCCCCCcCCHHHHHHHHHHhCCC--C-cEEEecCchhhHHHHHHHHHHhCCeEEEEcC
Confidence 4555555543 3455 99888 888888777655421 2 245655554 567899999999999999986
Q ss_pred HHHHHH-------HhCCCCCCcEEEcCC
Q 037610 106 SEIEAV-------LLLDVSPDRIIYANP 126 (405)
Q Consensus 106 ~E~~~a-------~~~G~~~~~Ii~~gp 126 (405)
.|+..+ .++|+++++|++...
T Consensus 249 ~Din~ak~Ln~kL~~~Gv~~eDIVlDP~ 276 (389)
T TIGR00381 249 MDINMQKTLNRYLLKRGLMPRDIVMDPT 276 (389)
T ss_pred CcHHHHHHHHHHHHHcCCCHHHEEEcCC
Confidence 665444 346999999999744
No 147
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=47.34 E-value=2.8e+02 Score=27.77 Aligned_cols=44 Identities=11% Similarity=0.274 Sum_probs=31.4
Q ss_pred ChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHH
Q 037610 189 HPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAK 232 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~ 232 (405)
+.+++.+.++.+++.++.-+.+.+=+|-...+.+.+.+.++.+.
T Consensus 149 ~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~ 192 (400)
T PRK07379 149 RVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAI 192 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 77888888888888777766677777765556667766555543
No 148
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=47.12 E-value=2.2e+02 Score=25.81 Aligned_cols=76 Identities=13% Similarity=0.007 Sum_probs=52.0
Q ss_pred cHHHHHHHHHhhcCCCCCccEEE----EeHHHHHHHHHHHHHhCCCCceeeeeccCC---cHHHHHHHHHcCCe---EEE
Q 037610 33 ELTEFMQSTILKRQEFDEVPFYL----MDLGVVVSLYNHMISNLPMIHPHYAVKCNP---EPALLEALAALGSN---FDC 102 (405)
Q Consensus 33 ~~~~~~~~~~~~~~~~~t~P~~v----~d~~~l~~n~~~~~~~~~~~~i~yavKaN~---~~~vl~~l~~~G~g---~~v 102 (405)
++.++++++... .+. |+.+ .|.+.+.+..+.+.+..++ ..+|--. -.+.++.|.+.|+. -.|
T Consensus 38 ~~~~~~~~i~~~---~~~-~v~~qv~~~~~e~~i~~a~~l~~~~~~----~~iKIP~T~~gl~ai~~L~~~gi~v~~T~V 109 (211)
T cd00956 38 DFEAVLKEICEI---IDG-PVSAQVVSTDAEGMVAEARKLASLGGN----VVVKIPVTEDGLKAIKKLSEEGIKTNVTAI 109 (211)
T ss_pred CHHHHHHHHHHh---cCC-CEEEEEEeCCHHHHHHHHHHHHHhCCC----EEEEEcCcHhHHHHHHHHHHcCCceeeEEe
Confidence 667777777543 234 5542 6788888888888876664 2344433 36788888888873 348
Q ss_pred cCHHHHHHHHhCCC
Q 037610 103 GSRSEIEAVLLLDV 116 (405)
Q Consensus 103 aS~~E~~~a~~~G~ 116 (405)
-|...+..+.++|.
T Consensus 110 ~s~~Qa~~Aa~AGA 123 (211)
T cd00956 110 FSAAQALLAAKAGA 123 (211)
T ss_pred cCHHHHHHHHHcCC
Confidence 88888888888874
No 149
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=47.07 E-value=2.3e+02 Score=25.98 Aligned_cols=50 Identities=10% Similarity=0.195 Sum_probs=34.2
Q ss_pred cEEEcCCCCCHHHHHHHHHcCCcEEEecC-----HHHHHHHHhHCCCCeEEEEEe
Q 037610 120 RIIYANPCKPVSHIKYAASVGVNLTTVDS-----VEELDKIRNWHPKSDLLIRIK 169 (405)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gv~~i~vds-----~~el~~i~~~~~~~~v~lRi~ 169 (405)
.++.+|...+.++++.+++.|+..+.+.+ .+.+..+.+.....++.+-++
T Consensus 73 pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld 127 (243)
T cd04731 73 PLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSID 127 (243)
T ss_pred CEEEeCCCCCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEE
Confidence 38888999999999999988876455543 455666666554445555554
No 150
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.94 E-value=1.5e+02 Score=27.31 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=85.4
Q ss_pred EeHHHHHHHHHHHHHh-CCCCceeeeeccCCcHHHHHHHH----Hc-C-C--e-EEEcCHHHHHHHHhCCCCCCcEEEcC
Q 037610 56 MDLGVVVSLYNHMISN-LPMIHPHYAVKCNPEPALLEALA----AL-G-S--N-FDCGSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~-~~~~~i~yavKaN~~~~vl~~l~----~~-G-~--g-~~vaS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
.|.+...+-.+.+.+. ++-+++.+ -+-...+.++.|. +. . + | =.|-+.++++.+.++|. +.++ .
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~--~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA---~FiV-s 97 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTN--RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGA---NFIV-T 97 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCC---CEEE-C
Confidence 4555555555555543 22344433 3323345555553 21 1 2 4 35678888999999985 4565 5
Q ss_pred CCCCHHHHHHHHHcCCc-EEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCC------CCC-CCC----CCCCCCh--h
Q 037610 126 PCKPVSHIKYAASVGVN-LTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAK------YPL-DSK----YGAGHHP--Q 191 (405)
Q Consensus 126 p~k~~~~l~~a~~~gv~-~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~------~~~-~sr----fGi~~~~--~ 191 (405)
|+.+++-++.+.++|+. +.=+-+..|+..-.+.+-+ .+++.|....|.. -.+ .-+ =|+ +. +
T Consensus 98 P~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~---~vKlFPA~~~G~~~ikal~~p~p~i~~~ptGGV--~~~~~ 172 (222)
T PRK07114 98 PLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCE---IVKLFPGSVYGPGFVKAIKGPMPWTKIMPTGGV--EPTEE 172 (222)
T ss_pred CCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCC---EEEECcccccCHHHHHHHhccCCCCeEEeCCCC--Ccchh
Confidence 77889999999999975 3467789998887776532 4777774422211 011 122 277 65 5
Q ss_pred hHHHHHHHHHHcCCeEEEEEEecC
Q 037610 192 EIMPLLKAAEASGLSVVGVSFHVG 215 (405)
Q Consensus 192 e~~~~~~~~~~~~l~l~Gih~H~g 215 (405)
.+.+.++ .+...+|+-+-+-
T Consensus 173 n~~~yl~----aGa~avg~Gs~L~ 192 (222)
T PRK07114 173 NLKKWFG----AGVTCVGMGSKLI 192 (222)
T ss_pred cHHHHHh----CCCEEEEEChhhc
Confidence 6666654 5677777655543
No 151
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=46.73 E-value=2e+02 Score=26.01 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=40.6
Q ss_pred cHHHHHHHHHcCC-eEEEcCH-----------HHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecC
Q 037610 86 EPALLEALAALGS-NFDCGSR-----------SEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDS 148 (405)
Q Consensus 86 ~~~vl~~l~~~G~-g~~vaS~-----------~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds 148 (405)
..++++.+.+.|+ ++-+.+. +-++.+.+. .+- .++.+|...+.++++.+.+.|+.-+.+-+
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-~~i-pvi~~GGi~~~~di~~~~~~Ga~gv~vg~ 220 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAA-TGI-PVIASGGVSSLDDIKALKELGVAGVIVGK 220 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-cCC-CEEEecCCCCHHHHHHHHHCCCCEEEEeH
Confidence 3577888888887 5555433 333444443 222 38888888899999999988876555544
No 152
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=46.42 E-value=1.5e+02 Score=28.92 Aligned_cols=84 Identities=15% Similarity=0.102 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhCCCCceeeeeccC---CcHHHHHHHHHcCC-eEEEcCHH----------------------------
Q 037610 59 GVVVSLYNHMISNLPMIHPHYAVKCN---PEPALLEALAALGS-NFDCGSRS---------------------------- 106 (405)
Q Consensus 59 ~~l~~n~~~~~~~~~~~~i~yavKaN---~~~~vl~~l~~~G~-g~~vaS~~---------------------------- 106 (405)
+.+.++++.+++..+ + =-.+|-. ...+.++.|.+.|+ +++|+..+
T Consensus 165 ~~~le~i~~i~~~~~-v--PVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t 241 (333)
T TIGR02151 165 KGWLEKIAEICSQLS-V--PVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPT 241 (333)
T ss_pred HHHHHHHHHHHHhcC-C--CEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhH
Confidence 455577888877652 2 2346654 36789999999998 77886631
Q ss_pred --HHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEe
Q 037610 107 --EIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTV 146 (405)
Q Consensus 107 --E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~v 146 (405)
.+..+++...+- .|+.+|...+..++..++..|+..+.+
T Consensus 242 ~~~l~~~~~~~~~i-pVIasGGI~~~~di~kaLalGAd~V~i 282 (333)
T TIGR02151 242 AASLLEVRSDAPDA-PIIASGGLRTGLDVAKAIALGADAVGM 282 (333)
T ss_pred HHHHHHHHhcCCCC-eEEEECCCCCHHHHHHHHHhCCCeehh
Confidence 122222212222 367777777788888887777654333
No 153
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=45.89 E-value=2.9e+02 Score=26.84 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=53.9
Q ss_pred eHHHHHHHHHHHHHhCCCCceeeeeccC---CcHHHHHHHHHcCC-eEEEcCH---------------------------
Q 037610 57 DLGVVVSLYNHMISNLPMIHPHYAVKCN---PEPALLEALAALGS-NFDCGSR--------------------------- 105 (405)
Q Consensus 57 d~~~l~~n~~~~~~~~~~~~i~yavKaN---~~~~vl~~l~~~G~-g~~vaS~--------------------------- 105 (405)
|.+.+.++++.+++.++ + =-.+|-. .....++.|.+.|+ +++|+..
T Consensus 162 df~~~~~~i~~l~~~~~-v--PVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~ 238 (326)
T cd02811 162 DFRGWLERIEELVKALS-V--PVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADW 238 (326)
T ss_pred CHHHHHHHHHHHHHhcC-C--CEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccc
Confidence 34445577777777542 2 2237765 36789999999998 7887652
Q ss_pred -----HHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEec
Q 037610 106 -----SEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 106 -----~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vd 147 (405)
..+..+++.-.+ -.|+.+|...+..++..++..|...+-+.
T Consensus 239 g~~t~~~l~~~~~~~~~-ipIiasGGIr~~~dv~kal~lGAd~V~i~ 284 (326)
T cd02811 239 GIPTAASLLEVRSALPD-LPLIASGGIRNGLDIAKALALGADLVGMA 284 (326)
T ss_pred cccHHHHHHHHHHHcCC-CcEEEECCCCCHHHHHHHHHhCCCEEEEc
Confidence 122233332112 23777777778888888888887655554
No 154
>PRK00208 thiG thiazole synthase; Reviewed
Probab=45.78 E-value=1.3e+02 Score=28.11 Aligned_cols=84 Identities=11% Similarity=0.068 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhCC-CCceeeeeccCCcHHHHHHHHHcCCeE------------EEcCHHHHHHHHhCCCCCCcEEEcCC
Q 037610 60 VVVSLYNHMISNLP-MIHPHYAVKCNPEPALLEALAALGSNF------------DCGSRSEIEAVLLLDVSPDRIIYANP 126 (405)
Q Consensus 60 ~l~~n~~~~~~~~~-~~~i~yavKaN~~~~vl~~l~~~G~g~------------~vaS~~E~~~a~~~G~~~~~Ii~~gp 126 (405)
.+.+.+++-+.... ++.++. =|+.++..++.+.+.|+.+ .+..++-++.+++. .+ -.++..|.
T Consensus 108 d~~~tv~aa~~L~~~Gf~vlp--yc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~-~~-vpVIveaG 183 (250)
T PRK00208 108 DPIETLKAAEILVKEGFVVLP--YCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQ-AD-VPVIVDAG 183 (250)
T ss_pred CHHHHHHHHHHHHHCCCEEEE--EeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-cC-CeEEEeCC
Confidence 34444444444332 454431 2567788888888886522 23355556666664 22 23777777
Q ss_pred CCCHHHHHHHHHcCCcEEEec
Q 037610 127 CKPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 127 ~k~~~~l~~a~~~gv~~i~vd 147 (405)
..++++...|++.|+.-+.+.
T Consensus 184 I~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 184 IGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 888888888888887644443
No 155
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=45.25 E-value=25 Score=31.08 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=47.9
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCH
Q 037610 52 PFYLMDLGVVVSLYNHMISNLPM-IHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPV 130 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 130 (405)
-+|++|-.+++..++.+++.-|+ ++++.+ -.|.+++.+.+. .+. .|+-.|-..++
T Consensus 97 RiFliDS~al~~~~~~i~~~~PD~vEilPg----~~p~vi~~i~~~-------------------~~~-PiIAGGLI~~~ 152 (175)
T PF04309_consen 97 RIFLIDSSALETGIKQIEQSKPDAVEILPG----VMPKVIKKIREE-------------------TNI-PIIAGGLIRTK 152 (175)
T ss_dssp EEE-SSHHHHHHHHHHHHHHT-SEEEEESC----CHHHHHCCCCCC-------------------CSS--EEEESS--SH
T ss_pred EeeeecHHHHHHHHHHHhhcCCCEEEEchH----HHHHHHHHHHHh-------------------cCC-CEEeecccCCH
Confidence 57999999999999999988775 666654 234555444332 222 38888889999
Q ss_pred HHHHHHHHcCCcEEEec
Q 037610 131 SHIKYAASVGVNLTTVD 147 (405)
Q Consensus 131 ~~l~~a~~~gv~~i~vd 147 (405)
+++..|+++|+.-++..
T Consensus 153 e~v~~al~aGa~aVSTS 169 (175)
T PF04309_consen 153 EDVEEALKAGADAVSTS 169 (175)
T ss_dssp HHHHHHCCTTCEEEEE-
T ss_pred HHHHHHHHcCCEEEEcC
Confidence 99999999998644443
No 156
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=45.23 E-value=1e+02 Score=29.18 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=58.6
Q ss_pred HHHhCCCCceeeee-ccCCcHHHHHHHHHcCCeEEE-------cCHHHHHH----HHhCCCCCCcEEEcCCCCCHHHHHH
Q 037610 68 MISNLPMIHPHYAV-KCNPEPALLEALAALGSNFDC-------GSRSEIEA----VLLLDVSPDRIIYANPCKPVSHIKY 135 (405)
Q Consensus 68 ~~~~~~~~~i~yav-KaN~~~~vl~~l~~~G~g~~v-------aS~~E~~~----a~~~G~~~~~Ii~~gp~k~~~~l~~ 135 (405)
+++.+.+-++.+.. -.-+++.+++.+...|..|-+ -+..++.. +...|..+ ++=. |.-++..+++
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~--lVRv-p~~~~~~i~r 85 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQP--VIRP-VEGSKPLIKQ 85 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCe--EEEC-CCCCHHHHHH
Confidence 44444322333333 334578999999998863322 24445442 33345543 3333 4557899999
Q ss_pred HHHcCCc---EEEecCHHHHHHHHhHCCCCeEEEE
Q 037610 136 AASVGVN---LTTVDSVEELDKIRNWHPKSDLLIR 167 (405)
Q Consensus 136 a~~~gv~---~i~vds~~el~~i~~~~~~~~v~lR 167 (405)
+++.|.. +..|+|.+|.+++.+..+-...+.|
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~R 120 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGER 120 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCC
Confidence 9997753 5689999999998886543333333
No 157
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=45.04 E-value=2.4e+02 Score=25.64 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=12.8
Q ss_pred cHHHHHHHHHcCC-eEEEc
Q 037610 86 EPALLEALAALGS-NFDCG 103 (405)
Q Consensus 86 ~~~vl~~l~~~G~-g~~va 103 (405)
-..+++.|.+.|+ .+|+.
T Consensus 16 k~~i~~~L~~~Gv~~iEvg 34 (237)
T PF00682_consen 16 KLEIAKALDEAGVDYIEVG 34 (237)
T ss_dssp HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEc
Confidence 3467777777777 67776
No 158
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=45.01 E-value=2.1e+02 Score=24.80 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=16.1
Q ss_pred CHHHHHHHHhHC-CCCeEEEEEecCC
Q 037610 148 SVEELDKIRNWH-PKSDLLIRIKSPD 172 (405)
Q Consensus 148 s~~el~~i~~~~-~~~~v~lRi~~~~ 172 (405)
|.+|++.+.++. ...++-+|.-|..
T Consensus 126 ~~ed~~~l~~l~~~Gv~v~~q~vP~d 151 (158)
T PRK09756 126 DDQDLADLRFIKQRGVNVFIQDVPGD 151 (158)
T ss_pred CHHHHHHHHHHHHcCCEEEEEECcCC
Confidence 466677666653 4567777877654
No 159
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=44.72 E-value=2e+02 Score=24.62 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCeEEEcCHHHHHHHHhCC-CCCCcEEEcCCCCCHHHHHHHHHcCCc--EEEec-----------------
Q 037610 88 ALLEALAALGSNFDCGSRSEIEAVLLLD-VSPDRIIYANPCKPVSHIKYAASVGVN--LTTVD----------------- 147 (405)
Q Consensus 88 ~vl~~l~~~G~g~~vaS~~E~~~a~~~G-~~~~~Ii~~gp~k~~~~l~~a~~~gv~--~i~vd----------------- 147 (405)
.+++...-.|+.+.+-|.+|+...++.+ .+..++++. .|+++++..+++.|+. .+++.
T Consensus 43 ~~l~ma~P~gvk~~i~sve~a~~~l~~~~~~~~~v~il--~k~~~~~~~l~~~g~~i~~vnvG~~~~~~~~~~v~~~v~l 120 (151)
T cd00001 43 TLLKLAAPPGVKLRIFTVEKAIEAINSPKYDKQRVFLL--FKNPQDVLRLVEGGVPIKTINVGNMAFRPGKVQITKAVSL 120 (151)
T ss_pred HHHHhhCCCCCeEEEEEHHHHHHHHhCcCCCCceEEEE--ECCHHHHHHHHHcCCCCCEEEECCCcCCCCCEEEecceec
Confidence 3444444456667777777776666553 333444443 3456667666665542 34444
Q ss_pred CHHHHHHHHhHC-CCCeEEEEEecCC
Q 037610 148 SVEELDKIRNWH-PKSDLLIRIKSPD 172 (405)
Q Consensus 148 s~~el~~i~~~~-~~~~v~lRi~~~~ 172 (405)
|.+|++.+.++. ...++.+|.-|+.
T Consensus 121 ~~~e~~~lk~l~~~Gv~v~~q~vP~d 146 (151)
T cd00001 121 DEEDVAAFKELAQKGVKVEIQMVPND 146 (151)
T ss_pred CHHHHHHHHHHHHcCCEEEEEECcCC
Confidence 356777766653 3567777777653
No 160
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=44.66 E-value=2.6e+02 Score=26.06 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=6.8
Q ss_pred HHHHHHHHcCC-eEEE
Q 037610 88 ALLEALAALGS-NFDC 102 (405)
Q Consensus 88 ~vl~~l~~~G~-g~~v 102 (405)
+.++.+++.|. ++++
T Consensus 25 e~~~~~~~~G~~~iEl 40 (283)
T PRK13209 25 EKLAIAKTAGFDFVEM 40 (283)
T ss_pred HHHHHHHHcCCCeEEE
Confidence 44444444444 4444
No 161
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.54 E-value=2.5e+02 Score=27.96 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=18.0
Q ss_pred EeHHHHHHHHHHHHHhCCCCceeeeeccCC--cHHHHHHHHHcCC
Q 037610 56 MDLGVVVSLYNHMISNLPMIHPHYAVKCNP--EPALLEALAALGS 98 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~~~~~~i~yavKaN~--~~~vl~~l~~~G~ 98 (405)
++++.+.+.++++++. + +...+|.++ ..++++.+.+.|+
T Consensus 115 ~~p~l~~~iv~~~~~~--~--V~v~vr~~~~~~~e~a~~l~eaGv 155 (368)
T PRK08649 115 IKPELITERIAEIRDA--G--VIVAVSLSPQRAQELAPTVVEAGV 155 (368)
T ss_pred CCHHHHHHHHHHHHhC--e--EEEEEecCCcCHHHHHHHHHHCCC
Confidence 3444455555555442 1 222444432 3455555555555
No 162
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=44.47 E-value=1.8e+02 Score=27.44 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=25.3
Q ss_pred eHHHHHHHHHHHHHhCCCCceeeeeccCC------cHHHHHHHHHcCC-eEEE
Q 037610 57 DLGVVVSLYNHMISNLPMIHPHYAVKCNP------EPALLEALAALGS-NFDC 102 (405)
Q Consensus 57 d~~~l~~n~~~~~~~~~~~~i~yavKaN~------~~~vl~~l~~~G~-g~~v 102 (405)
+.+.+.+-++++++.. .+-..+|..+ ..++++.+.+.|+ ++.+
T Consensus 146 ~~~~~~eiv~~vr~~~---~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 146 DPEAVANLLKAVKAAV---DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred CHHHHHHHHHHHHHcc---CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3455666666666554 2224466554 2567777888887 5554
No 163
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=44.28 E-value=2.2e+02 Score=27.62 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=76.9
Q ss_pred CcHHHHHHHHHhhc--C----CCCCccEEEEeHHHHHHHHHHHHHhCCCC-ceeeeecc---CC---cHHHHHHHHHcCC
Q 037610 32 DELTEFMQSTILKR--Q----EFDEVPFYLMDLGVVVSLYNHMISNLPMI-HPHYAVKC---NP---EPALLEALAALGS 98 (405)
Q Consensus 32 ~~~~~~~~~~~~~~--~----~~~t~P~~v~d~~~l~~n~~~~~~~~~~~-~i~yavKa---N~---~~~vl~~l~~~G~ 98 (405)
..+.++++.+.... . .-|+ |+. .+...|.+-++++++ ++.+ .+....++ |+ ..++++.|.+.|.
T Consensus 122 ~e~~~~i~~i~~~~~I~~VilSGGD-Pl~-~~~~~L~~ll~~l~~-i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~ 198 (321)
T TIGR03822 122 AELDAAFAYIADHPEIWEVILTGGD-PLV-LSPRRLGDIMARLAA-IDHVKIVRFHTRVPVADPARVTPALIAALKTSGK 198 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCC-ccc-CCHHHHHHHHHHHHh-CCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC
Confidence 34555666554331 1 1267 874 355677777777765 4533 23444443 44 5678888888773
Q ss_pred ----eEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcE---EEe-----cCHHHHHHHHhHCCCCeE-E
Q 037610 99 ----NFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNL---TTV-----DSVEELDKIRNWHPKSDL-L 165 (405)
Q Consensus 99 ----g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~---i~v-----ds~~el~~i~~~~~~~~v-~ 165 (405)
+++.....|+ .....+.++.+.+.|+.+ .++ ||.++++.+.+...+.++ .
T Consensus 199 ~v~i~l~~~h~~el-----------------~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~p 261 (321)
T TIGR03822 199 TVYVALHANHAREL-----------------TAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKP 261 (321)
T ss_pred cEEEEecCCChhhc-----------------CHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCee
Confidence 2222222221 012344555666788753 234 788888777654322221 1
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH
Q 037610 166 IRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA 202 (405)
Q Consensus 166 lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~ 202 (405)
..+..-.. ......|.+ +.++..++++.++.
T Consensus 262 yyl~~~~p----~~g~~~f~~--~~~~~~~i~~~l~~ 292 (321)
T TIGR03822 262 YYLHHLDL----APGTAHFRV--TIEEGQALVRALRG 292 (321)
T ss_pred EEEEecCC----CCCcccccC--cHHHHHHHHHHHHH
Confidence 11221111 111256777 88999999988765
No 164
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=43.91 E-value=1.7e+02 Score=28.67 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=38.8
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCc---HHHHHHHHHcCC---eEEEcCHHH
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPE---PALLEALAALGS---NFDCGSRSE 107 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~---~~vl~~l~~~G~---g~~vaS~~E 107 (405)
|| |. +++.+.+.+-++.+++.++. ..-.++=+||. .+.++.+.+.|+ .+.|-|..+
T Consensus 60 GT-Ps-~l~~~~l~~ll~~i~~~~~~-~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~ 121 (350)
T PRK08446 60 GT-PS-TVSAKFYEPIFEIISPYLSK-DCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNE 121 (350)
T ss_pred Cc-cc-cCCHHHHHHHHHHHHHhcCC-CceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCH
Confidence 46 54 46777788888888776542 13457888884 899999999996 355666544
No 165
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=43.78 E-value=59 Score=31.42 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=55.0
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCCceeeeecc------CC--cHHHHHHHHHcCC-eEEE------------cCHHHHHH
Q 037610 52 PFYLMDLGVVVSLYNHMISNLPMIHPHYAVKC------NP--EPALLEALAALGS-NFDC------------GSRSEIEA 110 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKa------N~--~~~vl~~l~~~G~-g~~v------------aS~~E~~~ 110 (405)
..++-|++.+.+-++++++..+ ..+ ++|. +. ..++++.+.+.|+ .+.| +..+.+..
T Consensus 101 a~Ll~~p~~~~~iv~~~~~~~~-~pv--svKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~ 177 (309)
T PF01207_consen 101 AALLKDPDLLAEIVKAVRKAVP-IPV--SVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAE 177 (309)
T ss_dssp GGGGC-HHHHHHHHHHHHHH-S-SEE--EEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHH
T ss_pred hhhhcChHHhhHHHHhhhcccc-cce--EEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHH
Confidence 3566788999999999998876 222 2332 12 4789999999998 5555 44555655
Q ss_pred HHhCCCCCCcEEEcCCCCCHHHHHHHHHc-CCcEEEe
Q 037610 111 VLLLDVSPDRIIYANPCKPVSHIKYAASV-GVNLTTV 146 (405)
Q Consensus 111 a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~-gv~~i~v 146 (405)
+++. ++- .++.||...+.++++..++. |+.-+.+
T Consensus 178 i~~~-~~i-pvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 178 IKEA-LPI-PVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp CHHC--TS-EEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred Hhhc-ccc-eeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 5554 443 48889998898888888765 5543333
No 166
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=43.55 E-value=1.1e+02 Score=28.70 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=53.7
Q ss_pred cCCcHHHHHHHHHcCCeEEE-------cCHHHHHHHH---h-CCCCCCcEEEcCCCCCHHHHHHHHHcCCc---EEEecC
Q 037610 83 CNPEPALLEALAALGSNFDC-------GSRSEIEAVL---L-LDVSPDRIIYANPCKPVSHIKYAASVGVN---LTTVDS 148 (405)
Q Consensus 83 aN~~~~vl~~l~~~G~g~~v-------aS~~E~~~a~---~-~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~---~i~vds 148 (405)
.-+++.+++.+...|..|-+ -+..++..+. + .|.++ ++=. |..++..++++++.|+. +..|+|
T Consensus 19 ~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~--~VRv-p~~~~~~i~r~LD~Ga~gIivP~v~t 95 (249)
T TIGR03239 19 ALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAP--VVRP-PWNEPVIIKRLLDIGFYNFLIPFVES 95 (249)
T ss_pred cCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCc--EEEC-CCCCHHHHHHHhcCCCCEEEecCcCC
Confidence 34588999999998863322 2444444333 3 45543 4433 55678999999998754 568999
Q ss_pred HHHHHHHHhHCCCCeEEEE
Q 037610 149 VEELDKIRNWHPKSDLLIR 167 (405)
Q Consensus 149 ~~el~~i~~~~~~~~v~lR 167 (405)
.+|++++.+..+-...+.|
T Consensus 96 aeea~~~v~a~kypP~G~R 114 (249)
T TIGR03239 96 AEEAERAVAATRYPPEGIR 114 (249)
T ss_pred HHHHHHHHHHcCCCCCCcC
Confidence 9999998876543334444
No 167
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=43.46 E-value=3.6e+02 Score=27.23 Aligned_cols=103 Identities=13% Similarity=0.154 Sum_probs=60.5
Q ss_pred HHHHHHHhhcCCCCCccEEEEeH-----HHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-eEEEc----C-
Q 037610 36 EFMQSTILKRQEFDEVPFYLMDL-----GVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGS-NFDCG----S- 104 (405)
Q Consensus 36 ~~~~~~~~~~~~~~t~P~~v~d~-----~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~va----S- 104 (405)
+.++.++. .+- .+.++|. ..+.+-++++++.+|+..+. ++--.+.+-++.+.+.|+ ++.|. |
T Consensus 156 ~~v~~lv~----aGv-DvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi--~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~ 228 (404)
T PRK06843 156 ERVEELVK----AHV-DILVIDSAHGHSTRIIELVKKIKTKYPNLDLI--AGNIVTKEAALDLISVGADCLKVGIGPGSI 228 (404)
T ss_pred HHHHHHHh----cCC-CEEEEECCCCCChhHHHHHHHHHhhCCCCcEE--EEecCCHHHHHHHHHcCCCEEEECCCCCcC
Confidence 45555553 233 4555554 45666777777777765443 444456677777777776 44332 1
Q ss_pred ----------------HHHHHHHH-hCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecC
Q 037610 105 ----------------RSEIEAVL-LLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDS 148 (405)
Q Consensus 105 ----------------~~E~~~a~-~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds 148 (405)
..|+..+. +.++ .||..|..++..++..|+..|...+.+.+
T Consensus 229 c~tr~~~g~g~p~ltai~~v~~~~~~~~v---pVIAdGGI~~~~Di~KALalGA~aVmvGs 286 (404)
T PRK06843 229 CTTRIVAGVGVPQITAICDVYEVCKNTNI---CIIADGGIRFSGDVVKAIAAGADSVMIGN 286 (404)
T ss_pred CcceeecCCCCChHHHHHHHHHHHhhcCC---eEEEeCCCCCHHHHHHHHHcCCCEEEEcc
Confidence 11222222 2233 37778888888888888888876656654
No 168
>PRK01362 putative translaldolase; Provisional
Probab=43.37 E-value=2.6e+02 Score=25.52 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=56.2
Q ss_pred cCCcHHHHHHHHHhhcCCCCCccEEE----EeHHHHHHHHHHHHHhCCCCceeeeeccCCc---HHHHHHHHHcCCe---
Q 037610 30 TKDELTEFMQSTILKRQEFDEVPFYL----MDLGVVVSLYNHMISNLPMIHPHYAVKCNPE---PALLEALAALGSN--- 99 (405)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~t~P~~v----~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~---~~vl~~l~~~G~g--- 99 (405)
.|.+..++++++..- .+. |+.+ .|.+.+.+..+++++..|++ .+|--.. ...++.|.++|+.
T Consensus 35 ~g~~~~~~~~~i~~~---i~g-~vs~qv~~~d~~~m~~~a~~l~~~~~~i----~iKIP~T~~G~~a~~~L~~~Gi~v~~ 106 (214)
T PRK01362 35 EGRDFEEVIKEICSI---VDG-PVSAEVIALDAEGMIKEGRELAKIAPNV----VVKIPMTPEGLKAVKALSKEGIKTNV 106 (214)
T ss_pred cCCCHHHHHHHHHHh---cCC-CEEEEEeeCCHHHHHHHHHHHHHhCCCE----EEEeCCCHHHHHHHHHHHHCCCceEE
Confidence 345677788877543 234 6543 46888888889998887752 4565443 5778888888974
Q ss_pred EEEcCHHHHHHHHhCCC
Q 037610 100 FDCGSRSEIEAVLLLDV 116 (405)
Q Consensus 100 ~~vaS~~E~~~a~~~G~ 116 (405)
-.|-|...+..+.++|.
T Consensus 107 T~vfs~~Qa~~Aa~aGa 123 (214)
T PRK01362 107 TLIFSANQALLAAKAGA 123 (214)
T ss_pred eeecCHHHHHHHHhcCC
Confidence 45889988888888875
No 169
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=43.31 E-value=3.3e+02 Score=26.73 Aligned_cols=43 Identities=16% Similarity=0.347 Sum_probs=29.8
Q ss_pred ChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHH
Q 037610 189 HPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAA 231 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~ 231 (405)
+.+++.+.++.+++.++.-+.+++-+|-...+.+.+.+.++.+
T Consensus 134 ~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~ 176 (360)
T TIGR00539 134 SAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLA 176 (360)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHH
Confidence 6778888888888877765667777776555666665555443
No 170
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=43.28 E-value=1.9e+02 Score=26.14 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=50.6
Q ss_pred eHHHHHHHHHHHHHhCCCCceeeeeccCC-------cHHHHHHHHHcCC-eEEEcCH------------HHHHHHHhCCC
Q 037610 57 DLGVVVSLYNHMISNLPMIHPHYAVKCNP-------EPALLEALAALGS-NFDCGSR------------SEIEAVLLLDV 116 (405)
Q Consensus 57 d~~~l~~n~~~~~~~~~~~~i~yavKaN~-------~~~vl~~l~~~G~-g~~vaS~------------~E~~~a~~~G~ 116 (405)
+.+.+.+-++++++..+ +-..+|.+. ...+++.+.+.|+ .+.+... +.+..+++. .
T Consensus 107 ~~~~~~eii~~v~~~~~---~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~-~ 182 (231)
T cd02801 107 DPELVAEIVRAVREAVP---IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEA-V 182 (231)
T ss_pred CHHHHHHHHHHHHHhcC---CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC-C
Confidence 56677788888887765 334566653 3467788888887 6644332 112233332 2
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHc-CCcEEEe
Q 037610 117 SPDRIIYANPCKPVSHIKYAASV-GVNLTTV 146 (405)
Q Consensus 117 ~~~~Ii~~gp~k~~~~l~~a~~~-gv~~i~v 146 (405)
+. .|+.+|...+.+++..+++. |+..+.+
T Consensus 183 ~i-pvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 183 SI-PVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred CC-eEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 22 36667777777777777765 5553333
No 171
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=43.20 E-value=1.4e+02 Score=29.19 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=59.4
Q ss_pred EeHHHHHHHHHHHHHhCCC---CceeeeeccCCcH----------HHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEE
Q 037610 56 MDLGVVVSLYNHMISNLPM---IHPHYAVKCNPEP----------ALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRII 122 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~~~~---~~i~yavKaN~~~----------~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii 122 (405)
.+.+.+++.++++++...+ +.+++.-+..... .+.+...+.|.- -...+..+++.+ ++-++
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~v~ 118 (330)
T PF03060_consen 45 LTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVP----FEEQLDVALEAK--PDVVS 118 (330)
T ss_dssp SSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-S----HHHHHHHHHHS----SEEE
T ss_pred cChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcc----cccccccccccc--eEEEE
Confidence 5669999999999987652 3332222211111 234455555544 334455666663 45466
Q ss_pred EcCCCCCHHHHHHHHHcCCc-EEEecCHHHHHHHHhHCCC
Q 037610 123 YANPCKPVSHIKYAASVGVN-LTTVDSVEELDKIRNWHPK 161 (405)
Q Consensus 123 ~~gp~k~~~~l~~a~~~gv~-~i~vds~~el~~i~~~~~~ 161 (405)
+.....+.+.++.+.+.|+. +..+.|.++++++.+.+.+
T Consensus 119 ~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D 158 (330)
T PF03060_consen 119 FGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGAD 158 (330)
T ss_dssp EESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-S
T ss_pred eecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCC
Confidence 65444447888888889986 3589999999998887654
No 172
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=43.12 E-value=1.1e+02 Score=28.80 Aligned_cols=82 Identities=18% Similarity=0.164 Sum_probs=53.5
Q ss_pred cCCcHHHHHHHHHcCCeEEE-------cCHHHHHH---H-HhCCCCCCcEEEcCCCCCHHHHHHHHHcCCc---EEEecC
Q 037610 83 CNPEPALLEALAALGSNFDC-------GSRSEIEA---V-LLLDVSPDRIIYANPCKPVSHIKYAASVGVN---LTTVDS 148 (405)
Q Consensus 83 aN~~~~vl~~l~~~G~g~~v-------aS~~E~~~---a-~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~---~i~vds 148 (405)
.-+++.+++.+...|..|-+ -+.+++.. + ...|..+ ++=. |..++..++++++.|.. +..|+|
T Consensus 26 ~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~--lVRv-p~~~~~~i~r~LD~Ga~giivP~v~t 102 (256)
T PRK10558 26 ALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAP--VVRV-PTNEPVIIKRLLDIGFYNFLIPFVET 102 (256)
T ss_pred cCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCc--EEEC-CCCCHHHHHHHhCCCCCeeeecCcCC
Confidence 34688999999998863322 24445433 2 2345533 3332 55578999999998753 568999
Q ss_pred HHHHHHHHhHCCCCeEEEE
Q 037610 149 VEELDKIRNWHPKSDLLIR 167 (405)
Q Consensus 149 ~~el~~i~~~~~~~~v~lR 167 (405)
.+|++.+.+..+-...+.|
T Consensus 103 ae~a~~~v~a~kypP~G~R 121 (256)
T PRK10558 103 AEEARRAVASTRYPPEGIR 121 (256)
T ss_pred HHHHHHHHHHcCCCCCCcC
Confidence 9999998876544344444
No 173
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=42.91 E-value=1.1e+02 Score=30.33 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=34.5
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC---cHHHHHHHHHcCC---eEEEcCHH
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP---EPALLEALAALGS---NFDCGSRS 106 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~---~~~vl~~l~~~G~---g~~vaS~~ 106 (405)
|| |.+ ++.+.++.-.+.+++ ++ ...+-.++=+|+ +.+.++.+.+.|+ .+.|-|..
T Consensus 60 Gt-ps~-l~~~~l~~L~~~i~~-~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~ 121 (374)
T PRK05799 60 GT-PTY-LSLEALEILKETIKK-LNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQ 121 (374)
T ss_pred Cc-ccC-CCHHHHHHHHHHHHh-CCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCC
Confidence 45 654 366777766666654 43 122345677887 6799999999995 34444443
No 174
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=42.75 E-value=2.9e+02 Score=25.94 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=38.2
Q ss_pred cEEEcCCCCCHHHHHHHHHcCCcEEEecC---------HHHHHHHHhHCCCCeEEEEEec
Q 037610 120 RIIYANPCKPVSHIKYAASVGVNLTTVDS---------VEELDKIRNWHPKSDLLIRIKS 170 (405)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gv~~i~vds---------~~el~~i~~~~~~~~v~lRi~~ 170 (405)
.+.+.|...+ ++++.+++.|+..+.+.| .+.++.+.+.+...++.+-|..
T Consensus 78 ~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~ 136 (253)
T TIGR02129 78 GLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSC 136 (253)
T ss_pred CEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 4888888875 999999999998888887 4577777776644566666654
No 175
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.30 E-value=2.4e+02 Score=26.88 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=37.1
Q ss_pred CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHc---CCcEEEec--CHHHHHHHHh
Q 037610 98 SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASV---GVNLTTVD--SVEELDKIRN 157 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~---gv~~i~vd--s~~el~~i~~ 157 (405)
++++|-|.+|+..+.++|. +.|.+ ++ .++++++++++. .+.+...- +.+.+..+.+
T Consensus 192 I~VEv~tleea~eA~~~ga--D~I~L-D~-~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~ 252 (277)
T PRK05742 192 VEVEVESLDELRQALAAGA--DIVML-DE-LSLDDMREAVRLTAGRAKLEASGGINESTLRVIAE 252 (277)
T ss_pred EEEEeCCHHHHHHHHHcCC--CEEEE-CC-CCHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHH
Confidence 5999999999999999985 43544 44 578999988762 34444443 2344444444
No 176
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=42.27 E-value=2.7e+02 Score=29.02 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=13.2
Q ss_pred EEEcCCCCCHHHHHHHHHcCCcEEEec
Q 037610 121 IIYANPCKPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 121 Ii~~gp~k~~~~l~~a~~~gv~~i~vd 147 (405)
|+..|..++..++..|+..|...+.+.
T Consensus 354 VIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 354 VIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 444455555555555555554433443
No 177
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=42.07 E-value=1.4e+02 Score=29.06 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=61.5
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCCceeeeecc------CC--cHHHHHHHHHcCC-eEEE------------cCHHHHHH
Q 037610 52 PFYLMDLGVVVSLYNHMISNLPMIHPHYAVKC------NP--EPALLEALAALGS-NFDC------------GSRSEIEA 110 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKa------N~--~~~vl~~l~~~G~-g~~v------------aS~~E~~~ 110 (405)
.+++-+++.+.+-+++++++.+ ++--+||. .. ...+++.+.+.|+ -+.| +..+.+..
T Consensus 114 a~Ll~~p~lv~~iv~a~~~av~--~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~ 191 (323)
T COG0042 114 AALLKNPELLAEIVKAMVEAVG--DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKE 191 (323)
T ss_pred hhhcCCHHHHHHHHHHHHHhhC--CCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHH
Confidence 5888999999999999999875 22234444 21 3579999999987 4444 34555555
Q ss_pred HHhCCCCCCcEEEcCCCCCHHHHHHHHHc
Q 037610 111 VLLLDVSPDRIIYANPCKPVSHIKYAASV 139 (405)
Q Consensus 111 a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~ 139 (405)
+++. ++.-.|+.||..++.++.++.+++
T Consensus 192 vk~~-~~~ipvi~NGdI~s~~~a~~~l~~ 219 (323)
T COG0042 192 LKEA-VPSIPVIANGDIKSLEDAKEMLEY 219 (323)
T ss_pred HHHh-CCCCeEEeCCCcCCHHHHHHHHHh
Confidence 5555 553358889999999999999885
No 178
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=42.04 E-value=1.4e+02 Score=26.94 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCC-eEEEc--------CHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEec----CHHHHH
Q 037610 87 PALLEALAALGS-NFDCG--------SRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVD----SVEELD 153 (405)
Q Consensus 87 ~~vl~~l~~~G~-g~~va--------S~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vd----s~~el~ 153 (405)
..+++...+.|+ ++-|. +.+.++.+++. ++.+ |++.+...++++++.+.+.|+..+++. +.++++
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~-v~iP-i~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~ 111 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA-VSLP-VLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLK 111 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh-cCCC-EEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHH
Confidence 478888888898 88885 88888888776 3333 666676677778999999998755532 235555
Q ss_pred HHHhH
Q 037610 154 KIRNW 158 (405)
Q Consensus 154 ~i~~~ 158 (405)
.+.+.
T Consensus 112 ~~~~~ 116 (217)
T cd00331 112 ELYEL 116 (217)
T ss_pred HHHHH
Confidence 55443
No 179
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=41.87 E-value=2.7e+02 Score=25.30 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=55.6
Q ss_pred cEEEEeHHHHH--HHHHHHHHhCCCCceeeeeccCC---------------------cHHHHHHHHHcCC-eEEEcCH--
Q 037610 52 PFYLMDLGVVV--SLYNHMISNLPMIHPHYAVKCNP---------------------EPALLEALAALGS-NFDCGSR-- 105 (405)
Q Consensus 52 P~~v~d~~~l~--~n~~~~~~~~~~~~i~yavKaN~---------------------~~~vl~~l~~~G~-g~~vaS~-- 105 (405)
...++....+. +.++++.+.++.-.+..++++.. ..++++.+.+.|+ .+.+.+.
T Consensus 98 ~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~ 177 (232)
T TIGR03572 98 DKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDR 177 (232)
T ss_pred CEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCc
Confidence 34555555444 34555556665433555655422 2577888888887 5666662
Q ss_pred ---------HHHHHHHhCCCCCCcEEEcCCCCCHHHHHH-HHHcCCcEEEec
Q 037610 106 ---------SEIEAVLLLDVSPDRIIYANPCKPVSHIKY-AASVGVNLTTVD 147 (405)
Q Consensus 106 ---------~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~-a~~~gv~~i~vd 147 (405)
+.++.+++. .+- .++..|...+.+++.. +.+.|+.-+.+-
T Consensus 178 ~g~~~g~~~~~~~~i~~~-~~i-pvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 178 DGTMKGYDLELIKTVSDA-VSI-PVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred cCCcCCCCHHHHHHHHhh-CCC-CEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 233444433 332 4888888888888888 556777644443
No 180
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=41.85 E-value=1e+02 Score=26.48 Aligned_cols=25 Identities=16% Similarity=0.338 Sum_probs=13.4
Q ss_pred CHHHHHHHHhHC-CCCeEEEEEecCC
Q 037610 148 SVEELDKIRNWH-PKSDLLIRIKSPD 172 (405)
Q Consensus 148 s~~el~~i~~~~-~~~~v~lRi~~~~ 172 (405)
|.+|++.+.++. ...++-+|.-|+.
T Consensus 122 ~~ee~~~l~~l~~~Gv~i~~q~vP~~ 147 (151)
T PF03830_consen 122 SEEEIEALKELADKGVEIEFQMVPDD 147 (151)
T ss_dssp -HHHHHHHHHHHHTT-EEEE-SSTTS
T ss_pred CHHHHHHHHHHHHCCCEEEEEECcCC
Confidence 466777776653 3566667666543
No 181
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=41.53 E-value=4.1e+02 Score=27.26 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=27.2
Q ss_pred CCCCCChhhHHHHHHHHHHc-CCeEEEEEEecCCCCCCHHHHHHHHHH
Q 037610 184 YGAGHHPQEIMPLLKAAEAS-GLSVVGVSFHVGSEATNFAAFRGAIAA 230 (405)
Q Consensus 184 fGi~~~~~e~~~~~~~~~~~-~l~l~Gih~H~gs~~~~~~~~~~~i~~ 230 (405)
.|+- .+.++.++++.+++. ++ -.++|+|-..+. .......+++.
T Consensus 177 ~G~l-~P~~v~~lv~alk~~~~~-pi~~H~Hnt~Gl-A~AN~laAiea 221 (448)
T PRK12331 177 AGIL-TPYVAYELVKRIKEAVTV-PLEVHTHATSGI-AEMTYLKAIEA 221 (448)
T ss_pred CCCC-CHHHHHHHHHHHHHhcCC-eEEEEecCCCCc-HHHHHHHHHHc
Confidence 4542 778889999988763 54 467888865542 23334444443
No 182
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=41.48 E-value=79 Score=25.12 Aligned_cols=88 Identities=23% Similarity=0.306 Sum_probs=54.3
Q ss_pred HHHHHHhCCCCceeeeeccCCcHHHHHH-HHHcCCeEEEcCHHHHHHHHhCCCCCCcEEE-cCCCCCHHHHHHHHHcCCc
Q 037610 65 YNHMISNLPMIHPHYAVKCNPEPALLEA-LAALGSNFDCGSRSEIEAVLLLDVSPDRIIY-ANPCKPVSHIKYAASVGVN 142 (405)
Q Consensus 65 ~~~~~~~~~~~~i~yavKaN~~~~vl~~-l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~-~gp~k~~~~l~~a~~~gv~ 142 (405)
+..+++..++.++... ++.++.-.+. ..+.|+. ...|.+|+...- .+ +-++. +.+....+.+..+++.|..
T Consensus 16 ~~~~~~~~~~~~v~~v--~d~~~~~~~~~~~~~~~~-~~~~~~~ll~~~--~~--D~V~I~tp~~~h~~~~~~~l~~g~~ 88 (120)
T PF01408_consen 16 LRALLRSSPDFEVVAV--CDPDPERAEAFAEKYGIP-VYTDLEELLADE--DV--DAVIIATPPSSHAEIAKKALEAGKH 88 (120)
T ss_dssp HHHHHHTTTTEEEEEE--ECSSHHHHHHHHHHTTSE-EESSHHHHHHHT--TE--SEEEEESSGGGHHHHHHHHHHTTSE
T ss_pred HHHHHhcCCCcEEEEE--EeCCHHHHHHHHHHhccc-chhHHHHHHHhh--cC--CEEEEecCCcchHHHHHHHHHcCCE
Confidence 4456665566666544 4445544554 4456777 777777665433 23 33444 4444456777888999985
Q ss_pred EEEec-----CHHHHHHHHhHCC
Q 037610 143 LTTVD-----SVEELDKIRNWHP 160 (405)
Q Consensus 143 ~i~vd-----s~~el~~i~~~~~ 160 (405)
+.++ |.+|++++.+..+
T Consensus 89 -v~~EKP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 89 -VLVEKPLALTLEEAEELVEAAK 110 (120)
T ss_dssp -EEEESSSSSSHHHHHHHHHHHH
T ss_pred -EEEEcCCcCCHHHHHHHHHHHH
Confidence 5555 8999998887654
No 183
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.19 E-value=2.7e+02 Score=26.68 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=25.3
Q ss_pred CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHH
Q 037610 98 SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (405)
+-+||.|.+|+..+.++|. +.|.+.+ .++++++++++
T Consensus 196 IeVEv~slee~~ea~~~ga--DiImLDn--~s~e~l~~av~ 232 (281)
T PRK06543 196 VEVEVDRLDQIEPVLAAGV--DTIMLDN--FSLDDLREGVE 232 (281)
T ss_pred EEEEeCCHHHHHHHHhcCC--CEEEECC--CCHHHHHHHHH
Confidence 4577888888888877776 4455543 46777777765
No 184
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=41.15 E-value=4.7e+02 Score=27.85 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=26.0
Q ss_pred ChhhHHHHHHHHHHc-CCeEEEEEEecCCCCCCHHHHHHHHHH
Q 037610 189 HPQEIMPLLKAAEAS-GLSVVGVSFHVGSEATNFAAFRGAIAA 230 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~l~l~Gih~H~gs~~~~~~~~~~~i~~ 230 (405)
.+.++.++++.+++. ++. .|+|+|--++. .......+++.
T Consensus 176 ~P~~v~~lv~~lk~~~~~p-i~~H~Hnt~Gl-a~An~laAvea 216 (582)
T TIGR01108 176 TPKAAYELVSALKKRFGLP-VHLHSHATTGM-AEMALLKAIEA 216 (582)
T ss_pred CHHHHHHHHHHHHHhCCCc-eEEEecCCCCc-HHHHHHHHHHh
Confidence 788899999988763 543 68999976653 23333344443
No 185
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.12 E-value=2.6e+02 Score=26.68 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=28.0
Q ss_pred CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHH
Q 037610 98 SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (405)
+-+||.|.+|++.+.++|. +.|.+-+ .++++++++++
T Consensus 197 IeVEv~tleea~ea~~~ga--DiI~LDn--~s~e~l~~av~ 233 (281)
T PRK06106 197 IEVEVDTLDQLEEALELGV--DAVLLDN--MTPDTLREAVA 233 (281)
T ss_pred EEEEeCCHHHHHHHHHcCC--CEEEeCC--CCHHHHHHHHH
Confidence 4688888888888888876 4466654 36888888875
No 186
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=41.11 E-value=2.2e+02 Score=28.00 Aligned_cols=79 Identities=25% Similarity=0.362 Sum_probs=44.6
Q ss_pred eEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCC
Q 037610 99 NFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKY 178 (405)
Q Consensus 99 g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~ 178 (405)
|+|+++..|++. .|.. .+...++..+.++...++|+.. |.|||..+..
T Consensus 3 GaDiS~~~~~E~---~G~~----f~~~~G~~~d~~~ilk~~G~N~--------------------vRlRvwv~P~----- 50 (332)
T PF07745_consen 3 GADISSLPEMEA---AGVK----FYDENGQEKDLFQILKDHGVNA--------------------VRLRVWVNPY----- 50 (332)
T ss_dssp EEE-TTHHHHHH---TT-------B-TTSSB--HHHHHHHTT--E--------------------EEEEE-SS-T-----
T ss_pred ceeHHHHHHHHH---cCCe----EECCCCCCCCHHHHHHhcCCCe--------------------EEEEeccCCc-----
Confidence 788899888663 4542 3333334456666667788753 4566653321
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecC
Q 037610 179 PLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVG 215 (405)
Q Consensus 179 ~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~g 215 (405)
.-|.+ +.+...++.+++++.|+++. |-||.+
T Consensus 51 ----~~g~~-~~~~~~~~akrak~~Gm~vl-ldfHYS 81 (332)
T PF07745_consen 51 ----DGGYN-DLEDVIALAKRAKAAGMKVL-LDFHYS 81 (332)
T ss_dssp ----TTTTT-SHHHHHHHHHHHHHTT-EEE-EEE-SS
T ss_pred ----ccccC-CHHHHHHHHHHHHHCCCeEE-Eeeccc
Confidence 13543 77888889999999999977 999985
No 187
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=41.02 E-value=52 Score=31.28 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHcCCcEEEecCH--HHHHHHHh
Q 037610 128 KPVSHIKYAASVGVNLTTVDSV--EELDKIRN 157 (405)
Q Consensus 128 k~~~~l~~a~~~gv~~i~vds~--~el~~i~~ 157 (405)
-+.+++++|++.|..++.+||+ +|++...+
T Consensus 196 esle~~~eAl~agaDiImLDNm~~e~~~~av~ 227 (280)
T COG0157 196 ESLEEAEEALEAGADIIMLDNMSPEELKEAVK 227 (280)
T ss_pred CCHHHHHHHHHcCCCEEEecCCCHHHHHHHHH
Confidence 3577777777777777777764 44444433
No 188
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=40.80 E-value=1.4e+02 Score=29.67 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=34.2
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC---cHHHHHHHHHcCC
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP---EPALLEALAALGS 98 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~---~~~vl~~l~~~G~ 98 (405)
|| |. +++.+.+.+-++.+++.++ ....-+++-+|+ ..+.++.+.+.|+
T Consensus 68 GT-Ps-~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~ 119 (375)
T PRK05628 68 GT-PS-LLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGF 119 (375)
T ss_pred Cc-cc-cCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCC
Confidence 45 44 3567788888888887764 122356778887 5789999999985
No 189
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=40.73 E-value=1.7e+02 Score=29.39 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=41.7
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC---cHHHHHHHHHcCC---eEEEcCHHH
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP---EPALLEALAALGS---NFDCGSRSE 107 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~---~~~vl~~l~~~G~---g~~vaS~~E 107 (405)
|| |. +++.+.+++-++.+++.++ .-..-.++=+|| +.+.++.|.+.|+ .+.|-|.++
T Consensus 71 GT-Ps-~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d 134 (390)
T PRK06582 71 GT-PS-LMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKE 134 (390)
T ss_pred Cc-cc-cCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCH
Confidence 46 73 4788889988888888653 111245788898 5889999999996 577777755
No 190
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=40.62 E-value=4.4e+02 Score=27.49 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=8.7
Q ss_pred EEcCCCCCHHHHHHHHHcCC
Q 037610 122 IYANPCKPVSHIKYAASVGV 141 (405)
Q Consensus 122 i~~gp~k~~~~l~~a~~~gv 141 (405)
+..|+.-+.+..+.+++.|+
T Consensus 287 V~aGnV~t~e~a~~li~aGA 306 (502)
T PRK07107 287 VGAGNVVDREGFRYLAEAGA 306 (502)
T ss_pred EEeccccCHHHHHHHHHcCC
Confidence 33344444444444444444
No 191
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=40.58 E-value=2.2e+02 Score=27.75 Aligned_cols=91 Identities=11% Similarity=0.019 Sum_probs=54.2
Q ss_pred EeHHHHHHHHHHHHHhCC--CCceeeeeccCC------cHHHHHHHHHcCC-eEEEcC----------------------
Q 037610 56 MDLGVVVSLYNHMISNLP--MIHPHYAVKCNP------EPALLEALAALGS-NFDCGS---------------------- 104 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~~~--~~~i~yavKaN~------~~~vl~~l~~~G~-g~~vaS---------------------- 104 (405)
.|.+.+.+-++++++... +..+=..+|-.+ ...+++.+.+.|+ ++.+.+
T Consensus 180 ~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG 259 (327)
T cd04738 180 QGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG 259 (327)
T ss_pred cCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC
Confidence 455778888888877653 111223466644 3578888888998 777654
Q ss_pred -------HHHHHHHHhCCCC-CCcEEEcCCCCCHHHHHHHHHcCCcEEEec
Q 037610 105 -------RSEIEAVLLLDVS-PDRIIYANPCKPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 105 -------~~E~~~a~~~G~~-~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vd 147 (405)
..-+..+++. +. .-.|+-+|...+.++..+++..|+..+.+.
T Consensus 260 ~~~~~~~l~~v~~l~~~-~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 260 APLKERSTEVLRELYKL-TGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred hhhhHHHHHHHHHHHHH-hCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 1222233332 21 113677777778888888888776544433
No 192
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.52 E-value=2.4e+02 Score=27.03 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=26.7
Q ss_pred CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHH
Q 037610 98 SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (405)
+-++|.|.+|+..++++|. +.|.+.+ .++++++++++
T Consensus 202 IeVEv~tl~ea~eal~~ga--DiI~LDn--m~~e~vk~av~ 238 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAEGA--ELVLLDN--FPVWQTQEAVQ 238 (289)
T ss_pred EEEEcCCHHHHHHHHHcCC--CEEEeCC--CCHHHHHHHHH
Confidence 4688888888888888876 4455543 46888888874
No 193
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=39.96 E-value=3.1e+02 Score=25.47 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhCCCCceeeeeccCC------cHHHHHHHHHcCC-eEEEcC----HHHHHHHHhCCCCCCcEEEcCCC
Q 037610 59 GVVVSLYNHMISNLPMIHPHYAVKCNP------EPALLEALAALGS-NFDCGS----RSEIEAVLLLDVSPDRIIYANPC 127 (405)
Q Consensus 59 ~~l~~n~~~~~~~~~~~~i~yavKaN~------~~~vl~~l~~~G~-g~~vaS----~~E~~~a~~~G~~~~~Ii~~gp~ 127 (405)
+.-.+.++++++.++. .+...+.+|. ...+++.|.+.|+ .+|--- .+.+..+++. .+. .|......
T Consensus 113 ~~d~~~v~~vr~~~g~-~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~-~~i-pia~dE~~ 189 (265)
T cd03315 113 ARDVAVVAALREAVGD-DAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPLPADDLEGRAALARA-TDT-PIMADESA 189 (265)
T ss_pred HHHHHHHHHHHHhcCC-CCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhh-CCC-CEEECCCC
Confidence 4556778888888862 2344688887 2467778888887 677433 4555555554 222 37777777
Q ss_pred CCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCC
Q 037610 128 KPVSHIKYAASVG-VNLTTVD-----SVEELDKIRNWHPKS 162 (405)
Q Consensus 128 k~~~~l~~a~~~g-v~~i~vd-----s~~el~~i~~~~~~~ 162 (405)
.+..+++.+++.+ +..+++| .+.+..++.+.+...
T Consensus 190 ~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~ 230 (265)
T cd03315 190 FTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEAL 230 (265)
T ss_pred CCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHc
Confidence 8888888888755 5556664 577777777665443
No 194
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=39.90 E-value=3.3e+02 Score=29.65 Aligned_cols=61 Identities=23% Similarity=0.215 Sum_probs=43.1
Q ss_pred cHHHHHHHHHcCC--eEEEcCHHHHHHHHhCCC---------------------------CCCcEEEc-CCCCCHHHHHH
Q 037610 86 EPALLEALAALGS--NFDCGSRSEIEAVLLLDV---------------------------SPDRIIYA-NPCKPVSHIKY 135 (405)
Q Consensus 86 ~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~---------------------------~~~~Ii~~-gp~k~~~~l~~ 135 (405)
...+++...+.|. =++|-+.+|++.|+++|. +.+.+++. +..+++++++.
T Consensus 149 l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~ 228 (695)
T PRK13802 149 LKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVED 228 (695)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHH
Confidence 5677777888887 689999999999999763 22223232 55677788888
Q ss_pred HHHcCCcEEEe
Q 037610 136 AASVGVNLTTV 146 (405)
Q Consensus 136 a~~~gv~~i~v 146 (405)
+.+.|+.-+-|
T Consensus 229 l~~~G~davLI 239 (695)
T PRK13802 229 YARAGADAVLV 239 (695)
T ss_pred HHHCCCCEEEE
Confidence 87777654444
No 195
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=39.88 E-value=1.8e+02 Score=30.42 Aligned_cols=121 Identities=14% Similarity=0.186 Sum_probs=64.3
Q ss_pred HHHHHHHhCCCCCCcE--EEcCCCC---CHHHHHHHHH----c--CCcE-EEec-CHHHHHHHHhHCCCCeEEEEEecCC
Q 037610 106 SEIEAVLLLDVSPDRI--IYANPCK---PVSHIKYAAS----V--GVNL-TTVD-SVEELDKIRNWHPKSDLLIRIKSPD 172 (405)
Q Consensus 106 ~E~~~a~~~G~~~~~I--i~~gp~k---~~~~l~~a~~----~--gv~~-i~vd-s~~el~~i~~~~~~~~v~lRi~~~~ 172 (405)
++++.+.+.|-+.++| +|.|... +.+..+..++ + +... ...+ ++++++.+++.+...-++++|.+..
T Consensus 122 ~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRP 201 (522)
T TIGR01211 122 ARLEQLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRP 201 (522)
T ss_pred HHHHHHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcC
Confidence 4467788888666555 5555433 3444443332 1 1000 0011 3677777777665545565555422
Q ss_pred CC------------CC-C----CC--------CCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHH
Q 037610 173 DS------------GA-K----YP--------LDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGA 227 (405)
Q Consensus 173 ~~------------~~-~----~~--------~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~ 227 (405)
+. |. . +. .-+| |. +.+++.++++.+++.++. +++|+-+|-...+.+.+.+.
T Consensus 202 D~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inR-gh--t~~~v~~Ai~~lr~~G~~-v~~~LM~GLPgqt~e~~~~t 277 (522)
T TIGR01211 202 DYCREEHIDRMLKLGATRVELGVQTIYNDILERTKR-GH--TVRDVVEATRLLRDAGLK-VVYHIMPGLPGSSFERDLEM 277 (522)
T ss_pred CcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHhCC-CC--CHHHHHHHHHHHHHcCCe-EEEEeecCCCCCCHHHHHHH
Confidence 21 00 0 00 0133 56 778888888888888885 66777777654555555444
Q ss_pred HHH
Q 037610 228 IAA 230 (405)
Q Consensus 228 i~~ 230 (405)
++.
T Consensus 278 ~~~ 280 (522)
T TIGR01211 278 FRE 280 (522)
T ss_pred HHH
Confidence 433
No 196
>PRK09389 (R)-citramalate synthase; Provisional
Probab=39.75 E-value=4.5e+02 Score=27.25 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=22.3
Q ss_pred CCCCCCChhhHHHHHHHHHHc-CCeEEEEEEecCCC
Q 037610 183 KYGAGHHPQEIMPLLKAAEAS-GLSVVGVSFHVGSE 217 (405)
Q Consensus 183 rfGi~~~~~e~~~~~~~~~~~-~l~l~Gih~H~gs~ 217 (405)
..|.- .|+++.++++.+++. ++ ..|+|+|--.+
T Consensus 165 TvG~~-~P~~~~~lv~~l~~~~~v-~l~~H~HND~G 198 (488)
T PRK09389 165 TVGIL-TPEKTYELFKRLSELVKG-PVSIHCHNDFG 198 (488)
T ss_pred CCCCc-CHHHHHHHHHHHHhhcCC-eEEEEecCCcc
Confidence 34542 788888888887653 54 46899986443
No 197
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=39.60 E-value=2.3e+02 Score=27.31 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=28.4
Q ss_pred CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHH
Q 037610 98 SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (405)
+-+||-|.+|++.+.++|. +.|.+-+. ++++++.+++
T Consensus 211 IeVEv~sleea~ea~~~ga--DiI~LDn~--s~e~~~~av~ 247 (296)
T PRK09016 211 VEVEVENLDELDQALKAGA--DIIMLDNF--TTEQMREAVK 247 (296)
T ss_pred EEEEeCCHHHHHHHHHcCC--CEEEeCCC--ChHHHHHHHH
Confidence 4789999999999999886 44555543 6788888876
No 198
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=39.47 E-value=3.4e+02 Score=25.79 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=27.0
Q ss_pred HHHHHHHHHcC-----C-eEEEcCHH-----HHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCc
Q 037610 87 PALLEALAALG-----S-NFDCGSRS-----EIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVN 142 (405)
Q Consensus 87 ~~vl~~l~~~G-----~-g~~vaS~~-----E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~ 142 (405)
.++++.|.+.| + .+|+.|.. ++...++.+...+.|.+. ..-..++++.|++.|+.
T Consensus 24 v~i~~~L~~~G~~~~~v~~IE~~s~~~~d~~~v~~~~~~~~~~~~v~~~-~r~~~~die~A~~~g~~ 89 (279)
T cd07947 24 VKIYDYLHELGGGSGVIRQTEFFLYTEKDREAVEACLDRGYKFPEVTGW-IRANKEDLKLVKEMGLK 89 (279)
T ss_pred HHHHHHHHHcCCCCCccceEEecCcChHHHHHHHHHHHcCCCCCEEEEE-ecCCHHHHHHHHHcCcC
Confidence 45666666666 5 45554432 222333344322234443 22245666666666654
No 199
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.26 E-value=3.2e+02 Score=26.11 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=28.7
Q ss_pred CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHH
Q 037610 98 SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (405)
+-+||.|.+|+..+.++|. +.|.+.+. ++++++.+++
T Consensus 185 IeVEv~~leea~~a~~aga--DiI~LDn~--~~e~l~~~v~ 221 (278)
T PRK08385 185 VEVEVESLEDALKAAKAGA--DIIMLDNM--TPEEIREVIE 221 (278)
T ss_pred EEEEeCCHHHHHHHHHcCc--CEEEECCC--CHHHHHHHHH
Confidence 4789999999999999987 45666654 6888888765
No 200
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=39.22 E-value=3e+02 Score=25.09 Aligned_cols=7 Identities=29% Similarity=0.396 Sum_probs=3.6
Q ss_pred CCCccEEE
Q 037610 48 FDEVPFYL 55 (405)
Q Consensus 48 ~~t~P~~v 55 (405)
++- |+.+
T Consensus 75 ~~~-~l~v 81 (241)
T PRK13585 75 VGV-PVQL 81 (241)
T ss_pred cCC-cEEE
Confidence 344 5555
No 201
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=39.19 E-value=3.5e+02 Score=27.65 Aligned_cols=107 Identities=9% Similarity=0.144 Sum_probs=59.8
Q ss_pred CCcEEEcCCCC---CHHHHHHHHH---------cCCcEEEec------CHHHHHHHHhHCCCCeEEEEEecCCCCCC-C-
Q 037610 118 PDRIIYANPCK---PVSHIKYAAS---------VGVNLTTVD------SVEELDKIRNWHPKSDLLIRIKSPDDSGA-K- 177 (405)
Q Consensus 118 ~~~Ii~~gp~k---~~~~l~~a~~---------~gv~~i~vd------s~~el~~i~~~~~~~~v~lRi~~~~~~~~-~- 177 (405)
...|.|.|... +.+++...++ .++. ++++ +.+.++.+.+.+- -||..++.... .
T Consensus 103 v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~e-itie~np~~l~~e~l~~lk~~G~-----~risiGvqS~~~~~ 176 (455)
T TIGR00538 103 VSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADAE-ISIEIDPRYITKDVIDALRDEGF-----NRLSFGVQDFNKEV 176 (455)
T ss_pred eEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCe-EEEEeccCcCCHHHHHHHHHcCC-----CEEEEcCCCCCHHH
Confidence 35677776643 3566655542 1222 4443 4566777776532 25555543310 0
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 037610 178 YPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKA 233 (405)
Q Consensus 178 ~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~ 233 (405)
.+.-.| +. +.+++.+.++.+++.++.-+.+.+-+|-...+.+.+.+.++.+.+
T Consensus 177 l~~l~r-~~--~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 177 QQAVNR-IQ--PEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAE 229 (455)
T ss_pred HHHhCC-CC--CHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHh
Confidence 111134 34 678888888888887776556666666555567777666655443
No 202
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=39.16 E-value=3e+02 Score=24.98 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCc--EEEecCHHHHHHHH
Q 037610 130 VSHIKYAASVGVN--LTTVDSVEELDKIR 156 (405)
Q Consensus 130 ~~~l~~a~~~gv~--~i~vds~~el~~i~ 156 (405)
++.++.+.+.|+. .-++++.++++++.
T Consensus 191 ~~~v~~~~~~G~~v~~wTvn~~~~~~~l~ 219 (233)
T cd08582 191 PAFIKALRDAGLKLNVWTVDDAEDAKRLI 219 (233)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 4444444444432 12444444444443
No 203
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=39.02 E-value=3.4e+02 Score=25.55 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=70.4
Q ss_pred EEeHHHHHHHHHHHHHh-CCCCceeeeeccCC-cHHHHHHHHHcC----C-eEEEcCHHHHHHHHhCCCCCCcEEEcCC-
Q 037610 55 LMDLGVVVSLYNHMISN-LPMIHPHYAVKCNP-EPALLEALAALG----S-NFDCGSRSEIEAVLLLDVSPDRIIYANP- 126 (405)
Q Consensus 55 v~d~~~l~~n~~~~~~~-~~~~~i~yavKaN~-~~~vl~~l~~~G----~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp- 126 (405)
.++.+.-.+-++.+.+. ++.+++.++ |+++ ....++.+.+.+ + .+-++....++.+.++|++. |.+.-|
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~P-~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~--i~i~~~~ 94 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTSP-AASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDG--VDLVFGT 94 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECC-CCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCE--EEEEEec
Confidence 35555555555554432 122333322 3333 223334443322 2 45567888888899988853 333222
Q ss_pred ---------CCCHHH-H-------HHHHHcCCc-EEEe-----cCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCC
Q 037610 127 ---------CKPVSH-I-------KYAASVGVN-LTTV-----DSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSK 183 (405)
Q Consensus 127 ---------~k~~~~-l-------~~a~~~gv~-~i~v-----ds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~sr 183 (405)
.++.++ + ++|.+.|.. .+++ .+.+.+..+.+...+... -||... --
T Consensus 95 S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~-~~i~l~----------Dt 163 (262)
T cd07948 95 SPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGV-NRVGIA----------DT 163 (262)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCC-CEEEEC----------Cc
Confidence 233333 2 223345653 1233 234555544432211100 023221 22
Q ss_pred CCCCCChhhHHHHHHHHHHc-CCeEEEEEEecCCC
Q 037610 184 YGAGHHPQEIMPLLKAAEAS-GLSVVGVSFHVGSE 217 (405)
Q Consensus 184 fGi~~~~~e~~~~~~~~~~~-~l~l~Gih~H~gs~ 217 (405)
+|+- .++++.++++.+++. ++. .|+|+|---+
T Consensus 164 ~G~~-~P~~v~~~~~~~~~~~~~~-i~~H~Hn~~G 196 (262)
T cd07948 164 VGIA-TPRQVYELVRTLRGVVSCD-IEFHGHNDTG 196 (262)
T ss_pred CCCC-CHHHHHHHHHHHHHhcCCe-EEEEECCCCC
Confidence 3532 788888999887763 544 5888885443
No 204
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.73 E-value=2.6e+02 Score=26.79 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=24.9
Q ss_pred CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHH
Q 037610 98 SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (405)
++.+|.|.+|+..|+++|. + ++..++ .++++++.+++
T Consensus 199 I~VEv~tleea~eA~~~Ga--D-~I~LDn-~~~e~l~~av~ 235 (288)
T PRK07428 199 IEVETETLEQVQEALEYGA--D-IIMLDN-MPVDLMQQAVQ 235 (288)
T ss_pred EEEECCCHHHHHHHHHcCC--C-EEEECC-CCHHHHHHHHH
Confidence 4777888888888887775 3 343343 36777777765
No 205
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.72 E-value=61 Score=30.85 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=49.7
Q ss_pred CCceeeeeccCC-cHHHHHHHHHcC------CeEE------------EcCHHHHHHHHhCCCCC-CcEEEcCCCCCHHHH
Q 037610 74 MIHPHYAVKCNP-EPALLEALAALG------SNFD------------CGSRSEIEAVLLLDVSP-DRIIYANPCKPVSHI 133 (405)
Q Consensus 74 ~~~i~yavKaN~-~~~vl~~l~~~G------~g~~------------vaS~~E~~~a~~~G~~~-~~Ii~~gp~k~~~~l 133 (405)
+++++-.=|+-| ...+.+.....| .|+. ..+..|+....+...+. .+|.. -+-+.+|.
T Consensus 118 ~~~i~~TRKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~V--Ev~tleea 195 (273)
T PRK05848 118 KVKLLDTRKTRPLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEI--ECESLEEA 195 (273)
T ss_pred CeEEEecCCCCcchhHHHHHHHHhCCCccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEE--EeCCHHHH
Confidence 566776777776 334444444433 1221 24666665555555653 33443 34579999
Q ss_pred HHHHHcCCcEEEecCH--HHHHHHHhH
Q 037610 134 KYAASVGVNLTTVDSV--EELDKIRNW 158 (405)
Q Consensus 134 ~~a~~~gv~~i~vds~--~el~~i~~~ 158 (405)
..|++.|+.++-+|++ ++++++.+.
T Consensus 196 ~~A~~~GaDiI~LDn~~~e~l~~~v~~ 222 (273)
T PRK05848 196 KNAMNAGADIVMCDNMSVEEIKEVVAY 222 (273)
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 9999999988888865 455555443
No 206
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=38.54 E-value=2.7e+02 Score=27.29 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEEEecCC
Q 037610 191 QEIMPLLKAAEASGLSVVGVSFHVGS 216 (405)
Q Consensus 191 ~e~~~~~~~~~~~~l~l~Gih~H~gs 216 (405)
+.+.++++.++..+.- ..|-...||
T Consensus 110 ~~v~~vVe~Ak~~g~p-iRIGVN~GS 134 (361)
T COG0821 110 DRVREVVEAAKDKGIP-IRIGVNAGS 134 (361)
T ss_pred HHHHHHHHHHHHcCCC-EEEecccCc
Confidence 3556666666665543 234445555
No 207
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.53 E-value=2e+02 Score=26.21 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=46.9
Q ss_pred CCceeeeeccCC---cHHHHHHHHHcCC-eEEEcCH----HH-HHHHHhCCCC--CCcEEEcCCCCCHHHHHHHHHcCCc
Q 037610 74 MIHPHYAVKCNP---EPALLEALAALGS-NFDCGSR----SE-IEAVLLLDVS--PDRIIYANPCKPVSHIKYAASVGVN 142 (405)
Q Consensus 74 ~~~i~yavKaN~---~~~vl~~l~~~G~-g~~vaS~----~E-~~~a~~~G~~--~~~Ii~~gp~k~~~~l~~a~~~gv~ 142 (405)
..++...+..+. ...+++.|.+.|+ -+|+.-- .| ++.+++ .++ |+-++=.|...+.++.+.|++.|..
T Consensus 12 ~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~-~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~ 90 (213)
T PRK06552 12 ANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVE-LYKDDPEVLIGAGTVLDAVTARLAILAGAQ 90 (213)
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHH-HcCCCCCeEEeeeeCCCHHHHHHHHHcCCC
Confidence 345667777766 5788889999998 6776532 22 333333 243 3333446888999999999999997
Q ss_pred E
Q 037610 143 L 143 (405)
Q Consensus 143 ~ 143 (405)
+
T Consensus 91 F 91 (213)
T PRK06552 91 F 91 (213)
T ss_pred E
Confidence 4
No 208
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=38.32 E-value=1.9e+02 Score=28.60 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=56.6
Q ss_pred HHHHHHHHcCC---eEEEcCHHHHHHHHhC--CCCCCcEEEcCCCCCHHHHHHHHHcCCcE--E---EecC-HHHHHHHH
Q 037610 88 ALLEALAALGS---NFDCGSRSEIEAVLLL--DVSPDRIIYANPCKPVSHIKYAASVGVNL--T---TVDS-VEELDKIR 156 (405)
Q Consensus 88 ~vl~~l~~~G~---g~~vaS~~E~~~a~~~--G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~--i---~vds-~~el~~i~ 156 (405)
+=++.|++.|| .+.|-+.++++.+... ..+-+ ++-.- ..+......|+++|+.- | |+.+ .+.++.+.
T Consensus 46 ~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iP-lvADI-HFd~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv 123 (360)
T PRK00366 46 AQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVP-LVADI-HFDYRLALAAAEAGADALRINPGNIGKRDERVREVV 123 (360)
T ss_pred HHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCC-EEEec-CCCHHHHHHHHHhCCCEEEECCCCCCchHHHHHHHH
Confidence 33456777786 5777777776655442 33322 44332 23566677778887653 3 4556 66777777
Q ss_pred hHCCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 037610 157 NWHPKSDLLIRIKSPDDSGAKYPLDSKYGA 186 (405)
Q Consensus 157 ~~~~~~~v~lRi~~~~~~~~~~~~~srfGi 186 (405)
+.+++.++.+||-.+-+. ..-+.-.|+|-
T Consensus 124 ~~ak~~~ipIRIGvN~GS-L~~~~~~~yg~ 152 (360)
T PRK00366 124 EAAKDYGIPIRIGVNAGS-LEKDLLEKYGE 152 (360)
T ss_pred HHHHHCCCCEEEecCCcc-ChHHHHHHcCC
Confidence 777777888888654322 11112257885
No 209
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=37.56 E-value=3.7e+02 Score=26.11 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhCCCCceeeeeccCC------------cHHHHHHHHHcCC-eEEEcCH----------------HHHHH
Q 037610 60 VVVSLYNHMISNLPMIHPHYAVKCNP------------EPALLEALAALGS-NFDCGSR----------------SEIEA 110 (405)
Q Consensus 60 ~l~~n~~~~~~~~~~~~i~yavKaN~------------~~~vl~~l~~~G~-g~~vaS~----------------~E~~~ 110 (405)
.+.+-++++++.++. .+-..+|-|+ ...+++.|.+.|+ .++|++. ..+..
T Consensus 206 f~~eiv~aIR~~vG~-d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ 284 (336)
T cd02932 206 FLLEVVDAVRAVWPE-DKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAER 284 (336)
T ss_pred HHHHHHHHHHHHcCC-CceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHH
Confidence 345677788877752 2234567552 2478888888887 7887521 12223
Q ss_pred HHhCCCCCCcEEEcCCCCCHHHHHHHHHcC
Q 037610 111 VLLLDVSPDRIIYANPCKPVSHIKYAASVG 140 (405)
Q Consensus 111 a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~g 140 (405)
+++. ++. .|+.+|...++++.+.+++.|
T Consensus 285 ir~~-~~i-PVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 285 IRQE-AGI-PVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred HHhh-CCC-CEEEeCCCCCHHHHHHHHHcC
Confidence 3332 333 377777777888888888876
No 210
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.38 E-value=2.9e+02 Score=26.52 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=26.8
Q ss_pred CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHH
Q 037610 98 SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (405)
+-+||.|.+|++.+.++|. +.|.+.+ .++++++++++
T Consensus 200 IeVEv~tleea~~a~~aga--DiImLDn--mspe~l~~av~ 236 (290)
T PRK06559 200 VEVEVESLAAAEEAAAAGA--DIIMLDN--MSLEQIEQAIT 236 (290)
T ss_pred EEEECCCHHHHHHHHHcCC--CEEEECC--CCHHHHHHHHH
Confidence 4678888888888888876 4455543 46888888875
No 211
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.37 E-value=3.8e+02 Score=26.11 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCCceeeeeccCC------------cHHHHHHHHHcCC-eEEEc
Q 037610 61 VVSLYNHMISNLPMIHPHYAVKCNP------------EPALLEALAALGS-NFDCG 103 (405)
Q Consensus 61 l~~n~~~~~~~~~~~~i~yavKaN~------------~~~vl~~l~~~G~-g~~va 103 (405)
+.+-++++++..+. .+-..+|.|+ ...+++.|.+.|+ .++|+
T Consensus 202 ~~EiI~aIR~avG~-d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 202 LLEIYDAIRAAVGP-GFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELS 256 (338)
T ss_pred HHHHHHHHHHHcCC-CCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 34667777777752 2334677763 2588899999987 77764
No 212
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=36.98 E-value=1.5e+02 Score=27.75 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHcCCeEEEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHhCCC
Q 037610 191 QEIMPLLKAAEASGLSVVGVSFHVGSEA--TNFAAFRGAIAAAKAVFDTAARTSN 243 (405)
Q Consensus 191 ~e~~~~~~~~~~~~l~l~Gih~H~gs~~--~~~~~~~~~i~~~~~~~~~~~~~G~ 243 (405)
+.+..+++.++..+...+ -+|.|+.. ...+.+...++.+.++.+.+++.|+
T Consensus 85 ~~~~~~i~~A~~lG~~~v--~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi 137 (279)
T cd00019 85 ERLKDEIERCEELGIRLL--VFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGV 137 (279)
T ss_pred HHHHHHHHHHHHcCCCEE--EECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCC
Confidence 345556666666676654 45777643 2344556667777777777766664
No 213
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=36.96 E-value=1.6e+02 Score=34.24 Aligned_cols=112 Identities=10% Similarity=0.075 Sum_probs=67.0
Q ss_pred CCccEEE--EeHHHHHHHHHHHHHhCCCCceeeeeccC----CcHHHHHHHHHcCCeEEEcCHHH---------------
Q 037610 49 DEVPFYL--MDLGVVVSLYNHMISNLPMIHPHYAVKCN----PEPALLEALAALGSNFDCGSRSE--------------- 107 (405)
Q Consensus 49 ~t~P~~v--~d~~~l~~n~~~~~~~~~~~~i~yavKaN----~~~~vl~~l~~~G~g~~vaS~~E--------------- 107 (405)
+. |+-+ .+.+.++.-++.. ++.-+.=++..- ....+++++.+.|+.+-+...+|
T Consensus 415 ~v-PlsIDS~~~~v~eaaLk~~----~G~~IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~e~r~~i~~ 489 (1178)
T TIGR02082 415 TV-PLMLDSSEWAVLEAGLKCI----QGKCIVNSISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTADRKIEICK 489 (1178)
T ss_pred CC-eEEEeCCcHHHHHHHHHhc----CCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHH
Confidence 45 7655 5566666555443 344444455542 23478999999998766666533
Q ss_pred --HHHHHh-CCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEe
Q 037610 108 --IEAVLL-LDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIK 169 (405)
Q Consensus 108 --~~~a~~-~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~ 169 (405)
++.+.+ +||++++|+|-....+...=+. +++. -.++.++.++.+.+..|..++.+-++
T Consensus 490 ~~~~~~~~~~Gi~~edIi~DP~i~~v~~g~~--e~n~--~~~~~le~i~~ik~~~pg~~~~~GlS 550 (1178)
T TIGR02082 490 RAYNILTEKVGFPPEDIIFDPNILTIATGIE--EHRR--YAINFIEAIRWIKEELPDAKISGGVS 550 (1178)
T ss_pred HHHHHHHHHcCCCHHHEEEeCCccccccCch--HHHH--HHHHHHHHHHHHHHhCCCCceEEEec
Confidence 345566 8999999999754442111111 2111 12456777788877777777776664
No 214
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=36.88 E-value=3.5e+02 Score=26.72 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=52.8
Q ss_pred eHHHHHHHHHHHHHhCCCCceeeeeccC---CcHHHHHHHHHcCC-eEEEcCHH--------------------------
Q 037610 57 DLGVVVSLYNHMISNLPMIHPHYAVKCN---PEPALLEALAALGS-NFDCGSRS-------------------------- 106 (405)
Q Consensus 57 d~~~l~~n~~~~~~~~~~~~i~yavKaN---~~~~vl~~l~~~G~-g~~vaS~~-------------------------- 106 (405)
|.+.+.++++.+++..+ +- -.+|-. -....++.+.+.|+ +++|+..+
T Consensus 170 ~f~~~le~i~~i~~~~~-vP--VivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~ 246 (352)
T PRK05437 170 DFRGWLDNIAEIVSALP-VP--VIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGI 246 (352)
T ss_pred cHHHHHHHHHHHHHhhC-CC--EEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccC
Confidence 44556677888877652 22 336755 46889999999998 78886532
Q ss_pred ----HHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecC
Q 037610 107 ----EIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDS 148 (405)
Q Consensus 107 ----E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds 148 (405)
.+..+++...+ -.|+..|...+..++..++..|...+.+.+
T Consensus 247 pt~~~l~~i~~~~~~-ipvia~GGI~~~~dv~k~l~~GAd~v~ig~ 291 (352)
T PRK05437 247 PTAQSLLEARSLLPD-LPIIASGGIRNGLDIAKALALGADAVGMAG 291 (352)
T ss_pred CHHHHHHHHHHhcCC-CeEEEECCCCCHHHHHHHHHcCCCEEEEhH
Confidence 11112222111 136666777777777777777766544443
No 215
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=36.82 E-value=2.1e+02 Score=28.39 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-eEEEc---------------CHHHHHHHHhCCCCCCcEEEcCC
Q 037610 63 SLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGS-NFDCG---------------SRSEIEAVLLLDVSPDRIIYANP 126 (405)
Q Consensus 63 ~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~va---------------S~~E~~~a~~~G~~~~~Ii~~gp 126 (405)
++++.+++..+ +=..+|---+++-++.+.+.|+ +++|+ ++.|+..+. +-+ -.|+..|.
T Consensus 215 ~~i~~~~~~~~---~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~--~~~-~~i~~dgG 288 (356)
T PF01070_consen 215 DDIEWIRKQWK---LPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAV--GDD-IPIIADGG 288 (356)
T ss_dssp HHHHHHHHHCS---SEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHH--TTS-SEEEEESS
T ss_pred HHHHHHhcccC---CceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhh--cCC-eeEEEeCC
Confidence 44666676654 2245888888999999999999 99998 234444433 322 25899999
Q ss_pred CCCHHHHHHHHHcCCcEEEecCHHHHHHH
Q 037610 127 CKPVSHIKYAASVGVNLTTVDSVEELDKI 155 (405)
Q Consensus 127 ~k~~~~l~~a~~~gv~~i~vds~~el~~i 155 (405)
..+..++-.|+..|...+-+ .-.-|..+
T Consensus 289 ir~g~Dv~kalaLGA~~v~i-gr~~l~~l 316 (356)
T PF01070_consen 289 IRRGLDVAKALALGADAVGI-GRPFLYAL 316 (356)
T ss_dssp --SHHHHHHHHHTT-SEEEE-SHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCeEEE-ccHHHHHH
Confidence 99999999999999985443 34444444
No 216
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=36.60 E-value=2.4e+02 Score=26.76 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=19.5
Q ss_pred ChhhHHHHHHHHHHc-CCeEEEEEEecCCC
Q 037610 189 HPQEIMPLLKAAEAS-GLSVVGVSFHVGSE 217 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~l~l~Gih~H~gs~ 217 (405)
.+.++.++++.+++. .-.-.|+|+|--.+
T Consensus 176 ~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~G 205 (274)
T cd07938 176 TPAQVRRLLEAVLERFPDEKLALHFHDTRG 205 (274)
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 788888888887653 11247788886443
No 217
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.54 E-value=2.2e+02 Score=25.75 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcC---HHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHH
Q 037610 60 VVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGS---RSEIEAVLLLDVSPDRIIYANPCKPVSHIKYA 136 (405)
Q Consensus 60 ~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS---~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a 136 (405)
.-.+.++++++.+|+..+- .=+=-+.+-++...+.|+.|-|+- .+=++.+++.|+ .+...+.|+.|+..|
T Consensus 41 ~a~~~I~~l~~~~~~~~vG--AGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i-----~~iPG~~TptEi~~A 113 (201)
T PRK06015 41 AALDAIRAVAAEVEEAIVG--AGTILNAKQFEDAAKAGSRFIVSPGTTQELLAAANDSDV-----PLLPGAATPSEVMAL 113 (201)
T ss_pred cHHHHHHHHHHHCCCCEEe--eEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCC-----CEeCCCCCHHHHHHH
Confidence 3344455555555532221 111123444555555565555542 222333444432 222223456666666
Q ss_pred HHcCCc
Q 037610 137 ASVGVN 142 (405)
Q Consensus 137 ~~~gv~ 142 (405)
.++|..
T Consensus 114 ~~~Ga~ 119 (201)
T PRK06015 114 REEGYT 119 (201)
T ss_pred HHCCCC
Confidence 666544
No 218
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=36.37 E-value=2.1e+02 Score=28.24 Aligned_cols=73 Identities=14% Similarity=0.265 Sum_probs=39.8
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCH-HHH----HHHHHHHHHHHHHHH
Q 037610 165 LIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNF-AAF----RGAIAAAKAVFDTAA 239 (405)
Q Consensus 165 ~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~-~~~----~~~i~~~~~~~~~~~ 239 (405)
.+||||+.-.+ ......|- ..+.+.++++.+++.++- ..|-...||-..+. +.| ...++.+.+.++.++
T Consensus 97 kiRINPGNi~~---~~~~~~g~--~~~~~~~vv~~ake~~ip-IRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le 170 (359)
T PF04551_consen 97 KIRINPGNIVD---EFQEELGS--IREKVKEVVEAAKERGIP-IRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILE 170 (359)
T ss_dssp EEEE-TTTSS-------SS-SS---HHHHHHHHHHHHHHT-E-EEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred eEEECCCcccc---cccccccc--hHHHHHHHHHHHHHCCCC-EEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 58999865210 01111143 478889999999888764 45677778743221 111 124455566677788
Q ss_pred hCCC
Q 037610 240 RTSN 243 (405)
Q Consensus 240 ~~G~ 243 (405)
++||
T Consensus 171 ~~~f 174 (359)
T PF04551_consen 171 ELGF 174 (359)
T ss_dssp HCT-
T ss_pred HCCC
Confidence 8886
No 219
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=35.83 E-value=3.6e+02 Score=24.90 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=21.9
Q ss_pred CHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHH
Q 037610 104 SRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEE 151 (405)
Q Consensus 104 S~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~e 151 (405)
+..-++.+++.|+. -..++ ..++++++.+++.|+.-|..|..+.
T Consensus 198 ~~~~v~~~~~~g~~--v~~WT--vn~~~~~~~l~~~GVdgIiTD~p~~ 241 (249)
T PRK09454 198 DEARVAALKAAGLR--ILVYT--VNDPARARELLRWGVDCICTDRIDL 241 (249)
T ss_pred CHHHHHHHHHCCCE--EEEEe--CCCHHHHHHHHHcCCCEEEeCChHh
Confidence 44445555555542 12332 2345566666666665555555543
No 220
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=35.80 E-value=4.3e+02 Score=25.85 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=16.8
Q ss_pred ChhhHHHHHHHHHHcCCeEEEEEEecCCC
Q 037610 189 HPQEIMPLLKAAEASGLSVVGVSFHVGSE 217 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~~l~l~Gih~H~gs~ 217 (405)
+++++.+.++.+.+.+...+.|-=-.|..
T Consensus 141 ~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~ 169 (333)
T TIGR03217 141 PPEKLAEQAKLMESYGADCVYIVDSAGAM 169 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEccCCCCC
Confidence 55666666665555555555555566653
No 221
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=35.51 E-value=1.8e+02 Score=28.84 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=54.7
Q ss_pred cCCeEEEcCHHHHHHHHhCCCCCCcEEEcC------CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeE
Q 037610 96 LGSNFDCGSRSEIEAVLLLDVSPDRIIYAN------PCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDL 164 (405)
Q Consensus 96 ~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~g------p~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v 164 (405)
=||-+.|...++++.|.++-..++.|+.+- |+ +...|..|...|..+=.|-|.-+.-+|++.+|+.++
T Consensus 60 PGCPVCVtp~~~ID~ai~La~~~~vi~~TfGDmlRVPG-s~~SL~~ara~GadVriVYSpldAl~iA~~nP~k~v 133 (364)
T PRK15062 60 PGCPVCVTPMGRIDAAIELASRPGVILCTFGDMLRVPG-SKGSLLEAKAEGADVRIVYSPLDALKIARENPDKEV 133 (364)
T ss_pred CCCCcEeCcHHHHHHHHHHhCCCCeEEEeccccccCCC-CcCCHHHHHhCCCCEEEEeCHHHHHHHHHHCCCCeE
Confidence 378899999999999999877776666651 22 356788888888776689999999999999887665
No 222
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=35.44 E-value=3.9e+02 Score=25.26 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=34.6
Q ss_pred cEEEcCCCCCHHHHHHHHHcCCcEEEecC---------HHHHHHHHhHCCCCeEEEEEec
Q 037610 120 RIIYANPCKPVSHIKYAASVGVNLTTVDS---------VEELDKIRNWHPKSDLLIRIKS 170 (405)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gv~~i~vds---------~~el~~i~~~~~~~~v~lRi~~ 170 (405)
.|-+.|...+ +.++.+++.|+..+++.| .+-++.+.+.+-..++.+-|..
T Consensus 85 ~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~ 143 (262)
T PLN02446 85 GLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSC 143 (262)
T ss_pred CEEEeCCccH-HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 4788887764 889999999988777776 5566666665533456655553
No 223
>PRK06852 aldolase; Validated
Probab=35.38 E-value=4.2e+02 Score=25.69 Aligned_cols=106 Identities=12% Similarity=0.153 Sum_probs=59.4
Q ss_pred CHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH--cCCe
Q 037610 129 PVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEA--SGLS 206 (405)
Q Consensus 129 ~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~--~~l~ 206 (405)
...-++.+.+.|+.. .+-+.-.++......++..+.||++..... ....++.-...-...++++++.-.. .+..
T Consensus 61 p~~~i~~~~~~g~da-v~~~~G~l~~~~~~~~~~~lIlkl~~~t~l---~~~~~~~p~~~l~~sVeeAvrlG~~~~~~Ad 136 (304)
T PRK06852 61 PEHLFRIASKAKIGV-FATQLGLIARYGMDYPDVPYLVKLNSKTNL---VKTSQRDPLSRQLLDVEQVVEFKENSGLNIL 136 (304)
T ss_pred HHHHHHHHHhcCCCE-EEeCHHHHHhhccccCCCcEEEEECCCCCc---CCcccCCccccceecHHHHHhcCCccCCCce
Confidence 345677777888874 455678777765555677899999843221 1100010000011123333432111 2355
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 037610 207 VVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSN 243 (405)
Q Consensus 207 l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~ 243 (405)
-+++|..+||.. -.++++.+.++.+...+.|+
T Consensus 137 AV~v~v~~Gs~~-----E~~ml~~l~~v~~ea~~~Gl 168 (304)
T PRK06852 137 GVGYTIYLGSEY-----ESEMLSEAAQIIYEAHKHGL 168 (304)
T ss_pred EEEEEEecCCHH-----HHHHHHHHHHHHHHHHHhCC
Confidence 666777777531 14577788888888888887
No 224
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=35.07 E-value=1.4e+02 Score=28.66 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=30.5
Q ss_pred EEEc-CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHh
Q 037610 121 IIYA-NPCKPVSHIKYAASVGVNLTTVDSVEELDKIRN 157 (405)
Q Consensus 121 Ii~~-gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~ 157 (405)
+++. |.+-+.++|+.|+++|+.-+|||+.-++..+..
T Consensus 207 lVlHGgSGip~~eI~~aI~~GV~KvNi~Td~~~A~~~a 244 (286)
T COG0191 207 LVLHGGSGIPDEEIREAIKLGVAKVNIDTDLQLAFTAA 244 (286)
T ss_pred EEEeCCCCCCHHHHHHHHHhCceEEeeCcHHHHHHHHH
Confidence 6665 557889999999999997799999988876654
No 225
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.71 E-value=1.9e+02 Score=30.39 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=14.1
Q ss_pred HHHHHHHHHcCCeEEEcCHHHHHHHHhCCCC
Q 037610 87 PALLEALAALGSNFDCGSRSEIEAVLLLDVS 117 (405)
Q Consensus 87 ~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~ 117 (405)
...++.+.+.|+..-|...-=...|.++|++
T Consensus 135 ~~~~~~l~~~G~~~viG~~~~~~~A~~~gl~ 165 (526)
T TIGR02329 135 RSCVNDLRARGIGAVVGAGLITDLAEQAGLH 165 (526)
T ss_pred HHHHHHHHHCCCCEEECChHHHHHHHHcCCc
Confidence 3444444444544444444444444445543
No 226
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=34.66 E-value=2.3e+02 Score=25.64 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHhCCCCceeeeeccCC---cHHHHHHHHHcCC-eEEEc----CHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHc
Q 037610 68 MISNLPMIHPHYAVKCNP---EPALLEALAALGS-NFDCG----SRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASV 139 (405)
Q Consensus 68 ~~~~~~~~~i~yavKaN~---~~~vl~~l~~~G~-g~~va----S~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~ 139 (405)
+.+.+...++...+.... ..++++.|.+.|+ -+|+. ...|....++..++ +-++=.|...+.++.+.|++.
T Consensus 1 ~~~~l~~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~a 79 (204)
T TIGR01182 1 IEELLREAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDA 79 (204)
T ss_pred ChhHHhhCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHc
Q ss_pred CCcEEE
Q 037610 140 GVNLTT 145 (405)
Q Consensus 140 gv~~i~ 145 (405)
|..+++
T Consensus 80 GA~Fiv 85 (204)
T TIGR01182 80 GAQFIV 85 (204)
T ss_pred CCCEEE
No 227
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=34.40 E-value=3.1e+02 Score=24.24 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=47.4
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCC-CceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCH
Q 037610 52 PFYLMDLGVVVSLYNHMISNLPM-IHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPV 130 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 130 (405)
.+|++|..++.+-+..+.+.-|+ ++++.- =.|.+++.+.+. .++ .|+-.|-..+.
T Consensus 101 R~FilDS~Al~~~~~~i~~~~pD~iEvLPG----v~Pkvi~~i~~~-----------------t~~---piIAGGLi~t~ 156 (181)
T COG1954 101 RLFILDSIALEKGIKQIEKSEPDFIEVLPG----VMPKVIKEITEK-----------------THI---PIIAGGLIETE 156 (181)
T ss_pred eeeeecHHHHHHHHHHHHHcCCCEEEEcCc----ccHHHHHHHHHh-----------------cCC---CEEeccccccH
Confidence 47889999999988888876564 333322 146777766553 222 37778888899
Q ss_pred HHHHHHHHcCCc
Q 037610 131 SHIKYAASVGVN 142 (405)
Q Consensus 131 ~~l~~a~~~gv~ 142 (405)
+|.++|+++|..
T Consensus 157 Eev~~Al~aGA~ 168 (181)
T COG1954 157 EEVREALKAGAV 168 (181)
T ss_pred HHHHHHHHhCcE
Confidence 999999999974
No 228
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=34.23 E-value=2.5e+02 Score=27.18 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCCCCcEEEcCCC--CCHHHHHHHHHcCCcEEEecCH
Q 037610 105 RSEIEAVLLLDVSPDRIIYANPC--KPVSHIKYAASVGVNLTTVDSV 149 (405)
Q Consensus 105 ~~E~~~a~~~G~~~~~Ii~~gp~--k~~~~l~~a~~~gv~~i~vds~ 149 (405)
.+.++.+.+.|++++++++.+-. .+.+.++.+++.|+ .+.+|.+
T Consensus 170 ~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~-~l~~D~~ 215 (308)
T PF02126_consen 170 LEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGV-YLEFDTI 215 (308)
T ss_dssp HHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT--EEEETTT
T ss_pred HHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCC-EEEecCC
Confidence 56678889999999999997543 34668888899999 4899998
No 229
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=33.80 E-value=3.6e+02 Score=24.34 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=15.3
Q ss_pred CCCCChhhHHHHHHHHHHcCCeEEEEEEec
Q 037610 185 GAGHHPQEIMPLLKAAEASGLSVVGVSFHV 214 (405)
Q Consensus 185 Gi~~~~~e~~~~~~~~~~~~l~l~Gih~H~ 214 (405)
|+ +.+.+.++++ .+...+++.+-+
T Consensus 159 GI--~~~n~~~~~~----aGa~~vav~s~l 182 (206)
T PRK09140 159 GV--TPENLAPYLA----AGAAGFGLGSAL 182 (206)
T ss_pred CC--CHHHHHHHHH----CCCeEEEEehHh
Confidence 78 8877777765 356666655444
No 230
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=33.67 E-value=4e+02 Score=24.90 Aligned_cols=79 Identities=18% Similarity=0.120 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCCCCceeeeeccCC-----cHHHHHHHHHcCC-eEEEcC--HHHH----HHHHhCCCCCCcEEEcC
Q 037610 58 LGVVVSLYNHMISNLPMIHPHYAVKCNP-----EPALLEALAALGS-NFDCGS--RSEI----EAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 58 ~~~l~~n~~~~~~~~~~~~i~yavKaN~-----~~~vl~~l~~~G~-g~~vaS--~~E~----~~a~~~G~~~~~Ii~~g 125 (405)
.+.+-+.++++++..+++.+..-+..|+ ....++.+.+.|+ |+-+-- .+|. ..+++.|+.+ +++..
T Consensus 71 ~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~--i~lv~ 148 (256)
T TIGR00262 71 PEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKP--IFLVA 148 (256)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcE--EEEEC
Confidence 3445555666665433444445566676 2456677777776 543322 2332 3345556633 55666
Q ss_pred CCCCHHHHHHHHH
Q 037610 126 PCKPVSHIKYAAS 138 (405)
Q Consensus 126 p~k~~~~l~~a~~ 138 (405)
|.-+.+.++...+
T Consensus 149 P~T~~eri~~i~~ 161 (256)
T TIGR00262 149 PNADDERLKQIAE 161 (256)
T ss_pred CCCCHHHHHHHHH
Confidence 6655666655544
No 231
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=33.46 E-value=3.1e+02 Score=26.72 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=24.8
Q ss_pred HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcE-EEecCHHHHHHHHhHC
Q 037610 108 IEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNL-TTVDSVEELDKIRNWH 159 (405)
Q Consensus 108 ~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~-i~vds~~el~~i~~~~ 159 (405)
++.+++.++ +-+++.+. . +..++.+.+.|+.+ .++-|..++++..+.+
T Consensus 75 l~vi~e~~v--~~V~~~~G-~-P~~~~~lk~~Gi~v~~~v~s~~~A~~a~~~G 123 (320)
T cd04743 75 LAVVRAIKP--TFALIAGG-R-PDQARALEAIGISTYLHVPSPGLLKQFLENG 123 (320)
T ss_pred HHHHHhcCC--cEEEEcCC-C-hHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence 444444433 33444432 2 33466666667652 3566777776666543
No 232
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=33.46 E-value=4.8e+02 Score=25.73 Aligned_cols=112 Identities=14% Similarity=0.082 Sum_probs=77.0
Q ss_pred EEeHHHHHHHHHHHHHhCCCCceeeeeccCC-------cHHHHHHHHHcCC-eEEEcCHHHHHHHHhCCCCCCcEEEc--
Q 037610 55 LMDLGVVVSLYNHMISNLPMIHPHYAVKCNP-------EPALLEALAALGS-NFDCGSRSEIEAVLLLDVSPDRIIYA-- 124 (405)
Q Consensus 55 v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~-------~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~-- 124 (405)
.+..+.+++-++...++ +.+++.++=+.. ....++.|.+.|+ ++.++.++=+..+++.|-+- ++.++
T Consensus 45 nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~l-~ih~S~q 121 (347)
T COG0826 45 NFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPGLIMLARERGPDL-PIHVSTQ 121 (347)
T ss_pred cCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHHHHHHHHHhCCCC-cEEEeee
Confidence 36666677776665543 566776665554 2577888889998 99999999999999987222 35543
Q ss_pred CCCCCHHHHHHHHHcCCcEEEe---cCHHHHHHHHhHCCCCeEEEEEe
Q 037610 125 NPCKPVSHIKYAASVGVNLTTV---DSVEELDKIRNWHPKSDLLIRIK 169 (405)
Q Consensus 125 gp~k~~~~l~~a~~~gv~~i~v---ds~~el~~i~~~~~~~~v~lRi~ 169 (405)
...-+.+.+++..+.|..+++. -|.+|+..|.+..++.++=+-++
T Consensus 122 ~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~veiEvfVh 169 (347)
T COG0826 122 ANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTPDVEIEVFVH 169 (347)
T ss_pred EecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCCceEEEEEe
Confidence 3345688999999999764433 36777777777655445555555
No 233
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=33.25 E-value=4.4e+02 Score=25.25 Aligned_cols=83 Identities=10% Similarity=0.067 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCCCCceeeeeccCC------------cHHHHHHHHHcCC-eEEEcCH--------------------HH
Q 037610 61 VVSLYNHMISNLPMIHPHYAVKCNP------------EPALLEALAALGS-NFDCGSR--------------------SE 107 (405)
Q Consensus 61 l~~n~~~~~~~~~~~~i~yavKaN~------------~~~vl~~l~~~G~-g~~vaS~--------------------~E 107 (405)
+.+-++++++.++. .+--.+|.++ ...+++.|.+.|+ .++|++. .-
T Consensus 194 ~~eii~avr~~~g~-d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~ 272 (327)
T cd02803 194 LLEIVAAVREAVGP-DFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLEL 272 (327)
T ss_pred HHHHHHHHHHHcCC-CceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHH
Confidence 45667777777742 2334566664 2467889999998 6765431 12
Q ss_pred HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHc-CCcEEEe
Q 037610 108 IEAVLLLDVSPDRIIYANPCKPVSHIKYAASV-GVNLTTV 146 (405)
Q Consensus 108 ~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~-gv~~i~v 146 (405)
+..+++. ++. .|+.+|...+.++++.+++. ++..+.+
T Consensus 273 ~~~ir~~-~~i-PVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 273 AEKIKKA-VKI-PVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HHHHHHH-CCC-CEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 2333333 332 36666766677777777776 4544443
No 234
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=32.94 E-value=95 Score=27.21 Aligned_cols=83 Identities=18% Similarity=0.291 Sum_probs=40.1
Q ss_pred CHHHHHHHHhCCCCCCc-EEEcCCCCCHHHHHHHHHcCCcEEEecCH--HHHHHHHh----HCCCCeEEEEEecCCCCCC
Q 037610 104 SRSEIEAVLLLDVSPDR-IIYANPCKPVSHIKYAASVGVNLTTVDSV--EELDKIRN----WHPKSDLLIRIKSPDDSGA 176 (405)
Q Consensus 104 S~~E~~~a~~~G~~~~~-Ii~~gp~k~~~~l~~a~~~gv~~i~vds~--~el~~i~~----~~~~~~v~lRi~~~~~~~~ 176 (405)
++.|+....+.-.++.. |.+-. -+.+++++|++.|+..+-+|++ ++++++.+ ..++ +.|=+.-
T Consensus 65 ~i~~av~~~~~~~~~~~~I~VEv--~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~--v~ie~SG------ 134 (169)
T PF01729_consen 65 GIEEAVKAARQAAPEKKKIEVEV--ENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRELNPR--VKIEASG------ 134 (169)
T ss_dssp SHHHHHHHHHHHSTTTSEEEEEE--SSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHTTT--SEEEEES------
T ss_pred CHHHHHHHHHHhCCCCceEEEEc--CCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcCCc--EEEEEEC------
Confidence 45555544444333332 44432 2456666666666665555543 44444333 3343 3333331
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEE
Q 037610 177 KYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGV 210 (405)
Q Consensus 177 ~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gi 210 (405)
|+ +.+.+.+..+ .++.+.++
T Consensus 135 --------GI--~~~ni~~ya~----~gvD~isv 154 (169)
T PF01729_consen 135 --------GI--TLENIAEYAK----TGVDVISV 154 (169)
T ss_dssp --------SS--STTTHHHHHH----TT-SEEEE
T ss_pred --------CC--CHHHHHHHHh----cCCCEEEc
Confidence 67 7777666543 45666554
No 235
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.90 E-value=93 Score=29.44 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhCCCCceeeeeccCC----cHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHH
Q 037610 60 VVVSLYNHMISNLPMIHPHYAVKCNP----EPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKY 135 (405)
Q Consensus 60 ~l~~n~~~~~~~~~~~~i~yavKaN~----~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~ 135 (405)
++...+++++..-.+.-+-|.+=..| ..++++.|.+.|+. +++.|+|-+.=+..||... ..-.+
T Consensus 3 r~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD-----------~iELGvPfSDPvADGP~Iq-~A~~r 70 (265)
T COG0159 3 RLDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGAD-----------ILELGVPFSDPVADGPTIQ-AAHLR 70 (265)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCC-----------EEEecCCCCCcCccCHHHH-HHHHH
Confidence 35566666665444455667777776 45778888888863 3557888887788999753 44566
Q ss_pred HHHcCCcEEEecCHHHHHHHHhHCCCCeEEE
Q 037610 136 AASVGVNLTTVDSVEELDKIRNWHPKSDLLI 166 (405)
Q Consensus 136 a~~~gv~~i~vds~~el~~i~~~~~~~~v~l 166 (405)
|++.|+. .-+.++.++.+.+.+++..+.|
T Consensus 71 AL~~g~t--~~~~lel~~~~r~~~~~~Pivl 99 (265)
T COG0159 71 ALAAGVT--LEDTLELVEEIRAKGVKVPIVL 99 (265)
T ss_pred HHHCCCC--HHHHHHHHHHHHhcCCCCCEEE
Confidence 7889985 3456666677766555544443
No 236
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=32.89 E-value=2.9e+02 Score=24.80 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=13.9
Q ss_pred CHHHHHHHHHcCCcE--EEecCHHHHHHHHh
Q 037610 129 PVSHIKYAASVGVNL--TTVDSVEELDKIRN 157 (405)
Q Consensus 129 ~~~~l~~a~~~gv~~--i~vds~~el~~i~~ 157 (405)
+++.++.+-+.|..+ -++++.++++++.+
T Consensus 179 ~~~~v~~~~~~G~~v~~wtvn~~~~~~~~~~ 209 (220)
T cd08579 179 NKEFIRQAHQNGKKVYVWTVNDPDDMQRYLA 209 (220)
T ss_pred CHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 344555555555431 24555555554443
No 237
>PRK08445 hypothetical protein; Provisional
Probab=32.49 E-value=2.9e+02 Score=27.22 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=23.9
Q ss_pred EEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCc------HHHHHHHHHcC
Q 037610 53 FYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPE------PALLEALAALG 97 (405)
Q Consensus 53 ~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~------~~vl~~l~~~G 97 (405)
.|+++.+.|.+.+++.++. +..+++.+-.-++. .++++.+.+..
T Consensus 70 ~y~l~~eeI~~~~~~a~~~-g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~ 119 (348)
T PRK08445 70 AYILSFEEIDKKIEELLAI-GGTQILFQGGVHPKLKIEWYENLVSHIAQKY 119 (348)
T ss_pred CeeCCHHHHHHHHHHHHHc-CCCEEEEecCCCCCCCHHHHHHHHHHHHHHC
Confidence 4566777777777776553 32344333333332 55666666654
No 238
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=32.28 E-value=4.6e+02 Score=25.12 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCC
Q 037610 105 RSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKY 184 (405)
Q Consensus 105 ~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srf 184 (405)
..++..+....+.+.+|++..|.. ......+...|+.++.+.+.++++... ++.++.+=.+|. +-.
T Consensus 73 ~~~~i~~~~~~l~~g~vl~~~p~y-~~~~~~~~~~g~~~~~~~d~~~l~~~~---~~~~~v~i~~p~----------NPt 138 (330)
T TIGR01140 73 AQEAIYLLPRLLAPGRVLVLAPTY-SEYARAWRAAGHEVVELPDLDRLPAAL---EELDVLVLCNPN----------NPT 138 (330)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCCc-HHHHHHHHHcCCEEEEeCCHHHHHhhc---ccCCEEEEeCCC----------CCC
Confidence 334433333334444688888865 344455567888777777777766542 233333324442 222
Q ss_pred CCCCChhhHHHHHHHHHHcCC
Q 037610 185 GAGHHPQEIMPLLKAAEASGL 205 (405)
Q Consensus 185 Gi~~~~~e~~~~~~~~~~~~l 205 (405)
|...+.+++.++++.+++.++
T Consensus 139 G~~~~~~~~~~l~~~a~~~~~ 159 (330)
T TIGR01140 139 GRLIPPETLLALAARLRARGG 159 (330)
T ss_pred CCCCCHHHHHHHHHHhHhcCC
Confidence 433377788888887766544
No 239
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=31.90 E-value=4.2e+02 Score=24.89 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=16.0
Q ss_pred HHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcE
Q 037610 106 SEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNL 143 (405)
Q Consensus 106 ~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~ 143 (405)
.-++.+.+.|.. -..|+-...++++++.+++.||.-
T Consensus 241 ~~v~~~~~~Gl~--v~vWTv~~n~~~~~~~l~~~GVdg 276 (282)
T cd08605 241 TAVSLVKASGLE--LGTYGKLNNDAEAVERQADLGVDG 276 (282)
T ss_pred HHHHHHHHcCcE--EEEeCCCCCCHHHHHHHHHcCCCE
Confidence 334445555542 233332123455555555555543
No 240
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=31.89 E-value=6e+02 Score=26.35 Aligned_cols=41 Identities=10% Similarity=0.294 Sum_probs=29.3
Q ss_pred ChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHH
Q 037610 189 HPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIA 229 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~ 229 (405)
+.+++.+.++.+++.++.-+.+.+-+|-...+.+.+.+.++
T Consensus 303 t~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~ 343 (488)
T PRK08207 303 TVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLE 343 (488)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence 78899999999888887556667777765556665555444
No 241
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=31.85 E-value=3.5e+02 Score=25.85 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=19.6
Q ss_pred ChhhHHHHHHHHHHc-C-CeEEEEEEecCCC
Q 037610 189 HPQEIMPLLKAAEAS-G-LSVVGVSFHVGSE 217 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~-l~l~Gih~H~gs~ 217 (405)
.+.++.++++.+++. + +. .++|+|--.+
T Consensus 182 ~P~~v~~lv~~l~~~~~~~~-i~~H~Hn~~G 211 (287)
T PRK05692 182 TPGQVRAVLEAVLAEFPAER-LAGHFHDTYG 211 (287)
T ss_pred CHHHHHHHHHHHHHhCCCCe-EEEEecCCCC
Confidence 788888888887753 2 44 5788886443
No 242
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.75 E-value=4.3e+02 Score=24.63 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCC-eEEEcCH-----------HHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHH-HcCCcEEEe
Q 037610 87 PALLEALAALGS-NFDCGSR-----------SEIEAVLLLDVSPDRIIYANPCKPVSHIKYAA-SVGVNLTTV 146 (405)
Q Consensus 87 ~~vl~~l~~~G~-g~~vaS~-----------~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~-~~gv~~i~v 146 (405)
.++++.+.+.|+ .+-+.+. +-+..+.+. .+- .++.+|...+.+++..++ +.|+.-+.+
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~-~~i-pvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNA-LKI-PLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhh-CCC-CEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 477888888887 4544433 334444444 332 488888888999999988 677753333
No 243
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=31.70 E-value=3.5e+02 Score=27.01 Aligned_cols=98 Identities=9% Similarity=0.077 Sum_probs=57.8
Q ss_pred EEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHH-HHHHHHHcCCeEEEcCHH------------------------HH
Q 037610 54 YLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPA-LLEALAALGSNFDCGSRS------------------------EI 108 (405)
Q Consensus 54 ~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~-vl~~l~~~G~g~~vaS~~------------------------E~ 108 (405)
-+++.+.+.+.+.++|+.-|+..|..-+=+..... +...+.+.|+.|-+-+-. |+
T Consensus 183 di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a 262 (368)
T PF01645_consen 183 DIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARA 262 (368)
T ss_dssp T-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHH
Confidence 36899999999999999887766643222333333 333366666544333222 23
Q ss_pred H-HHHhCCCCCC-cEEEcCCCCCHHHHHHHHHcCCcEEEecCHHH
Q 037610 109 E-AVLLLDVSPD-RIIYANPCKPVSHIKYAASVGVNLTTVDSVEE 151 (405)
Q Consensus 109 ~-~a~~~G~~~~-~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~e 151 (405)
. .+.+.|.... .++..|...+..++-.|+..|...+.+...-.
T Consensus 263 ~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~l 307 (368)
T PF01645_consen 263 HQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAAL 307 (368)
T ss_dssp HHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHH
T ss_pred HHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhh
Confidence 2 3344576543 47889999999999999999998777765443
No 244
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=31.57 E-value=2.9e+02 Score=28.70 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=33.5
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCCC-ce-eeeecc-CC---cHHHHHHHHHcCC
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLPMI-HP-HYAVKC-NP---EPALLEALAALGS 98 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~~~-~i-~yavKa-N~---~~~vl~~l~~~G~ 98 (405)
|| |.. ++.+.+.+-++.+++.+|+. .+ -+.+-+ +| ..+.++.|.+.|+
T Consensus 227 GT-Pt~-L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv 280 (488)
T PRK08207 227 GT-PTS-LTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGV 280 (488)
T ss_pred CC-ccC-CCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCC
Confidence 45 543 47888899899888887531 11 355655 54 6899999999985
No 245
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=30.84 E-value=2.7e+02 Score=25.38 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=42.5
Q ss_pred cHHHHHHHHHcCC-eEEEcCHHHHHHHHhC-----------CCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEec
Q 037610 86 EPALLEALAALGS-NFDCGSRSEIEAVLLL-----------DVSPDRIIYANPCKPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 86 ~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~-----------G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vd 147 (405)
...+++...+.|+ |+-+.+...++..++. +.+++.+..+ | +-+|++...+.|+.+|.+|
T Consensus 35 v~~mA~Aa~~gGAvgiR~~gv~dIkai~~~v~vPIIGIiKrd~~~s~v~IT-p--tlkeVd~L~~~Ga~IIA~D 105 (229)
T COG3010 35 VAAMALAAEQGGAVGIRIEGVEDIKAIRAVVDVPIIGIIKRDYPDSPVRIT-P--TLKEVDALAEAGADIIAFD 105 (229)
T ss_pred HHHHHHHHHhCCcceEeecchhhHHHHHhhCCCCeEEEEecCCCCCCceec-c--cHHHHHHHHHCCCcEEEee
Confidence 3566666667788 9999999999987775 2333334443 3 4678999999999888877
No 246
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=30.69 E-value=4.2e+02 Score=25.06 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=36.9
Q ss_pred CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHc---CCcEEEecC--HHHHHHHHhH
Q 037610 98 SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASV---GVNLTTVDS--VEELDKIRNW 158 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~---gv~~i~vds--~~el~~i~~~ 158 (405)
++++|.|.+|+..+.++|. + ++..+|. ++++++++.+. .+.+..+-. .+-+..+.+.
T Consensus 185 Igvev~s~eea~~A~~~ga--D-yI~ld~~-~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~ 246 (268)
T cd01572 185 IEVEVETLEQLKEALEAGA--D-IIMLDNM-SPEELREAVALLKGRVLLEASGGITLENIRAYAET 246 (268)
T ss_pred EEEEECCHHHHHHHHHcCC--C-EEEECCc-CHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHc
Confidence 4899999999999998886 3 4545665 58889888763 244333333 3444444443
No 247
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=30.51 E-value=3.7e+02 Score=23.55 Aligned_cols=81 Identities=9% Similarity=0.007 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCCceeeeeccCCc-HHHHHHHHHcCC-eEEE---cCH---HH-HHHHHhCCCCCCcEEE--cCCCCCH
Q 037610 62 VSLYNHMISNLPMIHPHYAVKCNPE-PALLEALAALGS-NFDC---GSR---SE-IEAVLLLDVSPDRIIY--ANPCKPV 130 (405)
Q Consensus 62 ~~n~~~~~~~~~~~~i~yavKaN~~-~~vl~~l~~~G~-g~~v---aS~---~E-~~~a~~~G~~~~~Ii~--~gp~k~~ 130 (405)
.+.++.+++.+++..+....|.+.. ...++.+.+.|+ ++-+ ++. .| ++.+++.|+. +.+ .+|. ++
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~---~~v~~~~~~-t~ 116 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKE---VQVDLIGVE-DP 116 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCe---EEEEEeCCC-CH
Confidence 3557777776777777777786653 355788888887 3332 122 22 3445556752 333 4664 77
Q ss_pred HHHHHHHHcCCcEEEe
Q 037610 131 SHIKYAASVGVNLTTV 146 (405)
Q Consensus 131 ~~l~~a~~~gv~~i~v 146 (405)
++...+...|+..+.+
T Consensus 117 ~e~~~~~~~~~d~v~~ 132 (202)
T cd04726 117 EKRAKLLKLGVDIVIL 132 (202)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 7777788877765443
No 248
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=30.49 E-value=3.3e+02 Score=24.52 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHH-cCC--eEEEcCHHHHHHHHhCCCC
Q 037610 84 NPEPALLEALAA-LGS--NFDCGSRSEIEAVLLLDVS 117 (405)
Q Consensus 84 N~~~~vl~~l~~-~G~--g~~vaS~~E~~~a~~~G~~ 117 (405)
+....+++.+.+ .|. ..+|.|.+|+..+.+.|++
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d 141 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFD 141 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCC
Confidence 344678888888 675 5788899999999998873
No 249
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=30.45 E-value=4.5e+02 Score=24.47 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCCccEEE--EeHHHHHHHHHHHHHhCCCCceeeeeccCCc-HHHHHHHHHcCCeEEEcC------
Q 037610 34 LTEFMQSTILKRQEFDEVPFYL--MDLGVVVSLYNHMISNLPMIHPHYAVKCNPE-PALLEALAALGSNFDCGS------ 104 (405)
Q Consensus 34 ~~~~~~~~~~~~~~~~t~P~~v--~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~-~~vl~~l~~~G~g~~vaS------ 104 (405)
+.++++.+.. ..+. |+-+ ++.+.+++-++.- ..+..++.+-.. +.+++.+.+.|+.+-+..
T Consensus 64 l~~~v~~l~~---~~~~-piSIDT~~~~v~~aaL~~g------~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~ 133 (258)
T cd00423 64 VIPVLRALAG---EPDV-PISVDTFNAEVAEAALKAG------ADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQ 133 (258)
T ss_pred HHHHHHHHHh---cCCC-eEEEeCCcHHHHHHHHHhC------CCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCc
Q ss_pred ---------------HHHHHH----HHhCCCCCCcEEEc---CCCCCHHHHHHHHH
Q 037610 105 ---------------RSEIEA----VLLLDVSPDRIIYA---NPCKPVSHIKYAAS 138 (405)
Q Consensus 105 ---------------~~E~~~----a~~~G~~~~~Ii~~---gp~k~~~~l~~a~~ 138 (405)
.++++. +.++|++.++|++- |+.|+.++-...++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g~~k~~~~~~~~l~ 189 (258)
T cd00423 134 TMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGFGKTEEHNLELLR 189 (258)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCccCCHHHHHHHHH
No 250
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=30.42 E-value=3.3e+02 Score=27.21 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=38.8
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCCC-ceeeeeccCC---cHHHHHHHHHcCC---eEEEcCH
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLPMI-HPHYAVKCNP---EPALLEALAALGS---NFDCGSR 105 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~~~-~i~yavKaN~---~~~vl~~l~~~G~---g~~vaS~ 105 (405)
|| |. +++.+.|.+-+..+++.+|-. ..-.++=+|+ ..+-++.+.+.|+ .+.|-|.
T Consensus 82 GT-Ps-~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~ 143 (394)
T PRK08898 82 GT-PS-LLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSF 143 (394)
T ss_pred CC-cC-CCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccC
Confidence 45 54 478889999999999998731 1245677776 5788999999985 3444444
No 251
>PRK09234 fbiC FO synthase; Reviewed
Probab=30.34 E-value=1.8e+02 Score=32.52 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=15.4
Q ss_pred ChhhHHHHHHHHHHcCCeEEEEEEe
Q 037610 189 HPQEIMPLLKAAEASGLSVVGVSFH 213 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~~l~l~Gih~H 213 (405)
+.++..+.+..+++.+.+..|+.-.
T Consensus 693 t~edrv~hl~~LreLq~~tgGf~~f 717 (843)
T PRK09234 693 TPRHWVAHLRVLRDIQDRTGGFTEF 717 (843)
T ss_pred CHHHHHHHHHHHHhcCcccCCeeee
Confidence 6677777777777766554444433
No 252
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=30.31 E-value=6.4e+02 Score=26.18 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=21.2
Q ss_pred CCCCCCChhhHHHHHHHHHHc--CC--eEEEEEEecCCC
Q 037610 183 KYGAGHHPQEIMPLLKAAEAS--GL--SVVGVSFHVGSE 217 (405)
Q Consensus 183 rfGi~~~~~e~~~~~~~~~~~--~l--~l~Gih~H~gs~ 217 (405)
..|.- .|+++.++++.+++. .. -..|+|+|--.+
T Consensus 168 TvG~~-~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~G 205 (494)
T TIGR00973 168 TVGYA-LPAEYGNLIKGLRENVPNIDKAILSVHCHNDLG 205 (494)
T ss_pred CCCCC-CHHHHHHHHHHHHHhhccccCceEEEEeCCCCC
Confidence 34532 778888888887652 11 246888885443
No 253
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=30.31 E-value=56 Score=26.00 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.5
Q ss_pred CCCCCCCEEEEcCCCccccccCC
Q 037610 359 PELEVNDWLVFSEMGAYTTACGT 381 (405)
Q Consensus 359 p~l~~GD~l~~~~~GAY~~~~~~ 381 (405)
+.+++||.|.++..|+|...+..
T Consensus 65 ~~Vk~Gd~VLlpeygGt~V~l~~ 87 (104)
T KOG1641|consen 65 VSVKVGDRVLLPEYGGTKVKLGD 87 (104)
T ss_pred ccccCCCEEEeeccCCcEEeccC
Confidence 38999999999999999998763
No 254
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=30.19 E-value=4.3e+02 Score=25.21 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=21.6
Q ss_pred CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHH
Q 037610 98 SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (405)
+-+||.|.+|++.+.++|. +.|.+.+ .++++++.+++
T Consensus 191 IeVEv~tleea~ea~~~Ga--DiI~lDn--~~~e~l~~~v~ 227 (277)
T TIGR01334 191 ITVEADTIEQALTVLQASP--DILQLDK--FTPQQLHHLHE 227 (277)
T ss_pred EEEECCCHHHHHHHHHcCc--CEEEECC--CCHHHHHHHHH
Confidence 3566666677666666664 3344543 35666666643
No 255
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=30.04 E-value=4e+02 Score=25.61 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=59.7
Q ss_pred HHHHHhCCC-CCCcEEEcCCCC---CHHHHHHHHHcCCcEEEecCHHH-----HH-HHHhHCC-CCeEEEEEecCCCCCC
Q 037610 108 IEAVLLLDV-SPDRIIYANPCK---PVSHIKYAASVGVNLTTVDSVEE-----LD-KIRNWHP-KSDLLIRIKSPDDSGA 176 (405)
Q Consensus 108 ~~~a~~~G~-~~~~Ii~~gp~k---~~~~l~~a~~~gv~~i~vds~~e-----l~-~i~~~~~-~~~v~lRi~~~~~~~~ 176 (405)
+..+++.+. .+.+++..|--- ++++.+.+.++|+.++..+.+.+ +. .+..... ...+.|-+..+.- ..
T Consensus 166 ~~~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvl-Dp 244 (307)
T TIGR01227 166 FRQILDECQIEDFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVL-DA 244 (307)
T ss_pred HHHHhhccCCCCCcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEeccc-Ch
Confidence 555555543 344677665532 46788899999986655555433 11 2222211 2245665554431 11
Q ss_pred C----CCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCC
Q 037610 177 K----YPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSE 217 (405)
Q Consensus 177 ~----~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~ 217 (405)
. ..+-...|+ +..|+.++++.+... -+++|+.+---+.
T Consensus 245 s~aPgtg~p~pgGL--t~~e~~~il~~l~~~-~~vvg~DvvE~~P 286 (307)
T TIGR01227 245 AHAPGVSAPAPGGL--YPDELLELVKRIAAS-DKVRGAEIAEVNP 286 (307)
T ss_pred hhCCCCCCCCCCCC--CHHHHHHHHHHHhcC-CCEEEEEEEEECC
Confidence 1 122356799 999999999876432 3677777654343
No 256
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=29.94 E-value=2.4e+02 Score=29.96 Aligned_cols=132 Identities=8% Similarity=0.124 Sum_probs=0.0
Q ss_pred cCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCC-----cEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCC
Q 037610 103 GSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGV-----NLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAK 177 (405)
Q Consensus 103 aS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv-----~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~ 177 (405)
++..++..+.++|. +.+-++-|.+...+--..++... .+..|-++.-=-+++-.+-+.-=.+||||+.
T Consensus 42 atv~Qi~~l~~aGc--eiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~v~kiRINPGN----- 114 (611)
T PRK02048 42 ACVAQAKRIIDAGG--EYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQYAEKVRINPGN----- 114 (611)
T ss_pred HHHHHHHHHHHcCC--CEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHhhCCEEECCCc-----
Q ss_pred CCCCCC-CCCCCCh--------------hhHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHH-------HHHHHHHHH
Q 037610 178 YPLDSK-YGAGHHP--------------QEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRG-------AIAAAKAVF 235 (405)
Q Consensus 178 ~~~~sr-fGi~~~~--------------~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~~~~~~-------~i~~~~~~~ 235 (405)
+....| |.. .. +.+..+++.+++.++-+. |-+.-|| .+.+...+ .++.+.+.+
T Consensus 115 ~~~~~k~f~~--~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iR-IGvN~GS--L~~~i~~~yg~tpe~mVeSAle~~ 189 (611)
T PRK02048 115 YVDPGRTFKK--LEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIR-IGVNHGS--LSDRIMSRYGDTPEGMVESCMEFL 189 (611)
T ss_pred CCCccccccc--cccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEE-EecCCcC--chHHHHHHhCCChHHHHHHHHHHH
Q ss_pred HHHHhCCCCch
Q 037610 236 DTAARTSNNKM 246 (405)
Q Consensus 236 ~~~~~~G~~~~ 246 (405)
+.+++.|++++
T Consensus 190 ~i~e~~~f~di 200 (611)
T PRK02048 190 RICVEEHFTDV 200 (611)
T ss_pred HHHHHCCCCcE
No 257
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=29.88 E-value=88 Score=27.95 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=25.1
Q ss_pred HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCc
Q 037610 108 IEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVN 142 (405)
Q Consensus 108 ~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~ 142 (405)
.+++...|.+|..|+|.+.. ++||+.|.+.|..
T Consensus 167 ~kIa~~iGl~p~eilFLSDn--~~EL~AA~~vGl~ 199 (229)
T COG4229 167 AKIAGDIGLPPAEILFLSDN--PEELKAAAGVGLA 199 (229)
T ss_pred HHHHHhcCCCchheEEecCC--HHHHHHHHhcchh
Confidence 56677778888888887764 7788888887765
No 258
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.81 E-value=90 Score=29.97 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=63.5
Q ss_pred CCCceeeeeccCC-cHHHHHHHHHcCC-e---EE--------------EcCHHHHHHHHhCCCC-CCcEEEcCCCCCHHH
Q 037610 73 PMIHPHYAVKCNP-EPALLEALAALGS-N---FD--------------CGSRSEIEAVLLLDVS-PDRIIYANPCKPVSH 132 (405)
Q Consensus 73 ~~~~i~yavKaN~-~~~vl~~l~~~G~-g---~~--------------vaS~~E~~~a~~~G~~-~~~Ii~~gp~k~~~~ 132 (405)
|++++.-.=|+-| ...+.+.....|- . +. +.+..++....+...+ ..+|..=- .+.++
T Consensus 132 ~~~~i~~TRKT~PG~R~l~k~AV~~GGG~~HR~gLsD~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv--~tlee 209 (290)
T PRK06559 132 DRIKVFDTRKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEV--ESLAA 209 (290)
T ss_pred CCeEEEeecCCCCcchHHHHHHHHhcCCcccCCCCcceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEEC--CCHHH
Confidence 3577777778877 3444555544431 1 11 2366665554444344 34566643 57899
Q ss_pred HHHHHHcCCcEEEecCH--HHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHH
Q 037610 133 IKYAASVGVNLTTVDSV--EELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLL 197 (405)
Q Consensus 133 l~~a~~~gv~~i~vds~--~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~ 197 (405)
+++|++.|+..+-+|++ +++++..+..+. ++.+-.. | |+ +.+.+.+..
T Consensus 210 a~~a~~agaDiImLDnmspe~l~~av~~~~~-~~~leaS-----G---------GI--~~~ni~~yA 259 (290)
T PRK06559 210 AEEAAAAGADIIMLDNMSLEQIEQAITLIAG-RSRIECS-----G---------NI--DMTTISRFR 259 (290)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHHHhcC-ceEEEEE-----C---------CC--CHHHHHHHH
Confidence 99999999998899975 566666554332 3433333 1 67 777666554
No 259
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=29.69 E-value=5.4e+02 Score=25.12 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=40.4
Q ss_pred cHHHHHHHHHcCC-eEEEc-CHHHHHH-HHhCCCCCCc-EEEcCCCCCHHHHHHH---HHcC--CcEEEecC-----HHH
Q 037610 86 EPALLEALAALGS-NFDCG-SRSEIEA-VLLLDVSPDR-IIYANPCKPVSHIKYA---ASVG--VNLTTVDS-----VEE 151 (405)
Q Consensus 86 ~~~vl~~l~~~G~-g~~va-S~~E~~~-a~~~G~~~~~-Ii~~gp~k~~~~l~~a---~~~g--v~~i~vds-----~~e 151 (405)
+..+++.+++.|. ++--- +++|... .++. .+.. +...+...++++++++ ++.| +..+++|+ ...
T Consensus 47 n~~LA~~a~~~G~~~i~hK~~~E~~~sfvrk~--k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~ 124 (321)
T TIGR01306 47 DEKLAEQLAENGYFYIMHRFDEESRIPFIKDM--QERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSV 124 (321)
T ss_pred hHHHHHHHHHcCCEEEEecCCHHHHHHHHHhc--cccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHH
Confidence 4567777777775 44444 6665332 2332 2222 3344555667665555 5677 46789998 666
Q ss_pred HHHHHhH
Q 037610 152 LDKIRNW 158 (405)
Q Consensus 152 l~~i~~~ 158 (405)
++.+.++
T Consensus 125 ~~~i~~i 131 (321)
T TIGR01306 125 INMIKHI 131 (321)
T ss_pred HHHHHHH
Confidence 5555543
No 260
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.67 E-value=1.1e+02 Score=29.34 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCceeeeeccCC-cHHHHHHHHHcC------CeEE------------EcCHHHHHHHHhCCCC-CCcEEEcCCCCCHHHH
Q 037610 74 MIHPHYAVKCNP-EPALLEALAALG------SNFD------------CGSRSEIEAVLLLDVS-PDRIIYANPCKPVSHI 133 (405)
Q Consensus 74 ~~~i~yavKaN~-~~~vl~~l~~~G------~g~~------------vaS~~E~~~a~~~G~~-~~~Ii~~gp~k~~~~l 133 (405)
++++.-.=|+-| ...+.+.....| .|+. +.|..|+....+...+ ..+|..- +.+.+++
T Consensus 130 ~~~i~~TRKT~PG~R~l~k~AV~~GGG~~HR~gL~d~vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVE--v~tleea 207 (281)
T PRK06106 130 KAKVVCTRKTTPGLRALEKYAVRAGGGMNHRFGLDDAVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVE--VDTLDQL 207 (281)
T ss_pred CeEEEEeCCCCCchhHHHHHHHHhcCcccccCCchhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEE--eCCHHHH
Confidence 467777778877 344555555443 1222 3466666655554444 2345543 3478999
Q ss_pred HHHHHcCCcEEEecCH--HHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEE
Q 037610 134 KYAASVGVNLTTVDSV--EELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGV 210 (405)
Q Consensus 134 ~~a~~~gv~~i~vds~--~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gi 210 (405)
.+|++.|+..+-+|++ +++++..+..+. +..+-.. | |+ +.+.+.+..+ .++++..+
T Consensus 208 ~ea~~~gaDiI~LDn~s~e~l~~av~~~~~-~~~leaS-----G---------GI--~~~ni~~yA~----tGVD~Is~ 265 (281)
T PRK06106 208 EEALELGVDAVLLDNMTPDTLREAVAIVAG-RAITEAS-----G---------RI--TPETAPAIAA----SGVDLISV 265 (281)
T ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHhCC-CceEEEE-----C---------CC--CHHHHHHHHh----cCCCEEEe
Confidence 9999999998999988 777776664432 2222222 1 68 7777666543 45555544
No 261
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=29.55 E-value=1.2e+02 Score=28.03 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=47.0
Q ss_pred CCceeeeeccCC----cHHHHHHHH--H--cC---CeEEEc-----CH-HHHHHHHhCCCCCCcEEEcCCCCCHHHHHHH
Q 037610 74 MIHPHYAVKCNP----EPALLEALA--A--LG---SNFDCG-----SR-SEIEAVLLLDVSPDRIIYANPCKPVSHIKYA 136 (405)
Q Consensus 74 ~~~i~yavKaN~----~~~vl~~l~--~--~G---~g~~va-----S~-~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a 136 (405)
+.++.+.-+|++ .++++...+ + .| +++|-. .. .|+..+.+.- ..-.+++.|...+.+..+.+
T Consensus 122 g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~ 200 (230)
T PF01884_consen 122 GSKVARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIAAVKKL-SDIPLIVGGGIRSPEQAREM 200 (230)
T ss_dssp TSHHHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHHHHHHS-SSSEEEEESS--SHHHHHHH
T ss_pred CCceEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHHHHHhc-CCccEEEeCCcCCHHHHHHH
Confidence 455666666664 234443322 2 23 256662 23 6777766654 34469999999999999999
Q ss_pred HHcCCcEEEecCHHH
Q 037610 137 ASVGVNLTTVDSVEE 151 (405)
Q Consensus 137 ~~~gv~~i~vds~~e 151 (405)
++.|...+++.+.-|
T Consensus 201 ~~aGAD~IVvGn~ie 215 (230)
T PF01884_consen 201 AEAGADTIVVGNAIE 215 (230)
T ss_dssp HCTTSSEEEESCHHH
T ss_pred HHCCCCEEEECCEEE
Confidence 999999889988644
No 262
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=29.48 E-value=3e+02 Score=27.79 Aligned_cols=51 Identities=27% Similarity=0.262 Sum_probs=33.9
Q ss_pred CCCCChhhHHHHHHHHHHc-CCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 037610 185 GAGHHPQEIMPLLKAAEAS-GLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTA 238 (405)
Q Consensus 185 Gi~~~~~e~~~~~~~~~~~-~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~ 238 (405)
|+- ++.++.++++.+|+. ++. +-+|+|.-|+. ..-.+..+++.-.+.+|.+
T Consensus 180 Gll-tP~~ayelVk~iK~~~~~p-v~lHtH~TsG~-a~m~ylkAvEAGvD~iDTA 231 (472)
T COG5016 180 GLL-TPYEAYELVKAIKKELPVP-VELHTHATSGM-AEMTYLKAVEAGVDGIDTA 231 (472)
T ss_pred ccC-ChHHHHHHHHHHHHhcCCe-eEEecccccch-HHHHHHHHHHhCcchhhhh
Confidence 542 778888999988874 665 44899987764 3445556666655555543
No 263
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=29.16 E-value=4.4e+02 Score=24.62 Aligned_cols=82 Identities=23% Similarity=0.274 Sum_probs=51.8
Q ss_pred cCCcHHHHHHHHHcCCeEEE----------cCHHH-HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCc---EEEecC
Q 037610 83 CNPEPALLEALAALGSNFDC----------GSRSE-IEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVN---LTTVDS 148 (405)
Q Consensus 83 aN~~~~vl~~l~~~G~g~~v----------aS~~E-~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~---~i~vds 148 (405)
+-+++-.+++++..|..+-+ .|+.- ++.+...+.+| |+= -|.-.+..++++++.|.. +..|+|
T Consensus 24 ~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~p--vVR-~p~g~~~~Ikq~LD~GAqtlliPmV~s 100 (255)
T COG3836 24 SLPDPYMAEILATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPP--VVR-PPVGDPVMIKQLLDIGAQTLLIPMVDT 100 (255)
T ss_pred cCCcHHHHHHHHhcCCCEEEecccccCccHHHHHHHHHHhhccCCCC--eee-CCCCCHHHHHHHHccccceeeeeccCC
Confidence 34677888888888863322 22222 33333334332 443 355578999999998854 468999
Q ss_pred HHHHHHHHhHCCCCeEEEE
Q 037610 149 VEELDKIRNWHPKSDLLIR 167 (405)
Q Consensus 149 ~~el~~i~~~~~~~~v~lR 167 (405)
.+|.+.+-+..+-...++|
T Consensus 101 ~eqAr~~V~A~rYPP~G~R 119 (255)
T COG3836 101 AEQARQAVAATRYPPLGER 119 (255)
T ss_pred HHHHHHHHHhccCCCCCcc
Confidence 9999998875443445555
No 264
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=29.14 E-value=5.7e+02 Score=25.32 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=57.3
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCC----cHHHHHHHHHcCC-eEEEcCH--------------HH
Q 037610 47 EFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNP----EPALLEALAALGS-NFDCGSR--------------SE 107 (405)
Q Consensus 47 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~----~~~vl~~l~~~G~-g~~vaS~--------------~E 107 (405)
.||. +...+.+.+.+-++++++.++. -+.--+..+. ....++.+.+.|+ .+.|-+. +-
T Consensus 117 ~yGa--~L~~~~eLv~e~V~~v~~~l~~-pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~ 193 (358)
T KOG2335|consen 117 GYGA--FLMDNPELVGEMVSAVRANLNV-PVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEA 193 (358)
T ss_pred Cccc--eeccCHHHHHHHHHHHHhhcCC-CeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHH
Confidence 4555 7778899999999999988862 1222222233 5788999999998 6777553 22
Q ss_pred HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHH-cCC
Q 037610 108 IEAVLLLDVSPDRIIYANPCKPVSHIKYAAS-VGV 141 (405)
Q Consensus 108 ~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~-~gv 141 (405)
+..+++. ++.=.++.||...+.++..++++ -|+
T Consensus 194 i~~v~~~-~~~ipviaNGnI~~~~d~~~~~~~tG~ 227 (358)
T KOG2335|consen 194 IKAVREN-VPDIPVIANGNILSLEDVERCLKYTGA 227 (358)
T ss_pred HHHHHHh-CcCCcEEeeCCcCcHHHHHHHHHHhCC
Confidence 2333332 43224666777777777777766 444
No 265
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=29.06 E-value=5.8e+02 Score=25.28 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=21.9
Q ss_pred EeHHHHHHHHHHHHHhCCCCceeeeeccCC-cHHHHHHHHHcCC
Q 037610 56 MDLGVVVSLYNHMISNLPMIHPHYAVKCNP-EPALLEALAALGS 98 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~~~~~~i~yavKaN~-~~~vl~~l~~~G~ 98 (405)
.+.+.+.+.++.+++.+|.+ .+++++ ..+-++.|.+.|+
T Consensus 135 ~~~e~l~~~i~~Ik~~~p~i----~i~~g~lt~e~l~~Lk~aGv 174 (371)
T PRK09240 135 VGVDYIRRALPIAREYFSSV----SIEVQPLSEEEYAELVELGL 174 (371)
T ss_pred CCHHHHHHHHHHHHHhCCCc----eeccCCCCHHHHHHHHHcCC
Confidence 45666777777776666543 234444 3444556666664
No 266
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=28.90 E-value=3.8e+02 Score=27.55 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=63.0
Q ss_pred EeHHHHHHHHHHHHHh----CC---CCceeeeeccCC-----cHHHHHHHHH-cCC--eEEEcCHHHHHHHHhCCCCCCc
Q 037610 56 MDLGVVVSLYNHMISN----LP---MIHPHYAVKCNP-----EPALLEALAA-LGS--NFDCGSRSEIEAVLLLDVSPDR 120 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~----~~---~~~i~yavKaN~-----~~~vl~~l~~-~G~--g~~vaS~~E~~~a~~~G~~~~~ 120 (405)
.+.+.++++++.+.+. .. +..+ -+++..+ ...+++.+.+ .++ .+|..+.++++.++++|.+...
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~-IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAleagad~~p 180 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDM-VALRNASGDPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALEVVADRKP 180 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCE-EEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHHhcCCCCc
Confidence 3457888888887321 00 1222 2455533 3467777766 454 8999999999999999987666
Q ss_pred EEEcCCCCC-HHHHHHHHHcCCcEEEecC--HHHHHHHHhHCCC
Q 037610 121 IIYANPCKP-VSHIKYAASVGVNLTTVDS--VEELDKIRNWHPK 161 (405)
Q Consensus 121 Ii~~gp~k~-~~~l~~a~~~gv~~i~vds--~~el~~i~~~~~~ 161 (405)
+++....-+ ++-.+.|.++|+. +++.+ ++.++++.+...+
T Consensus 181 lI~Sat~dN~~~m~~la~~yg~p-vVv~~~dl~~L~~lv~~~~~ 223 (450)
T PRK04165 181 LLYAATKENYEEMAELAKEYNCP-LVVKAPNLEELKELVEKLQA 223 (450)
T ss_pred eEEecCcchHHHHHHHHHHcCCc-EEEEchhHHHHHHHHHHHHH
Confidence 777644211 3334456678886 45555 4555554443333
No 267
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.62 E-value=1.1e+02 Score=29.17 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=50.4
Q ss_pred CCCceeeeeccCC-cHHHHHHHHHcC------Ce-----------EEE---c--CHHHHHHHHhCCCC-CCcEEEcCCCC
Q 037610 73 PMIHPHYAVKCNP-EPALLEALAALG------SN-----------FDC---G--SRSEIEAVLLLDVS-PDRIIYANPCK 128 (405)
Q Consensus 73 ~~~~i~yavKaN~-~~~vl~~l~~~G------~g-----------~~v---a--S~~E~~~a~~~G~~-~~~Ii~~gp~k 128 (405)
|++++.--=|+-| ...+.+.....| .| +.. . +..++....+...+ ..+|..= +.
T Consensus 124 ~~~~i~~TRKT~PG~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVE--v~ 201 (281)
T PRK06543 124 TRARIVDTRKTTPGLRIFERYAVRCGGGHNHRYSLSDAVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVE--VD 201 (281)
T ss_pred CCCEEEeCCCCCCcchHHHHHHHHhcCCcCcCCCCCceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEE--eC
Confidence 3577777777777 344445544443 01 111 1 34554444343333 2346553 35
Q ss_pred CHHHHHHHHHcCCcEEEecCH--HHHHHHHhHCC
Q 037610 129 PVSHIKYAASVGVNLTTVDSV--EELDKIRNWHP 160 (405)
Q Consensus 129 ~~~~l~~a~~~gv~~i~vds~--~el~~i~~~~~ 160 (405)
+.+++.+|++.|+..+-+|++ +++++..+..+
T Consensus 202 slee~~ea~~~gaDiImLDn~s~e~l~~av~~~~ 235 (281)
T PRK06543 202 RLDQIEPVLAAGVDTIMLDNFSLDDLREGVELVD 235 (281)
T ss_pred CHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHhC
Confidence 789999999999998899975 56666555433
No 268
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.60 E-value=4.1e+02 Score=23.45 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=13.9
Q ss_pred CCCCChhhHHHHHHHHHHcCCeEEEEE
Q 037610 185 GAGHHPQEIMPLLKAAEASGLSVVGVS 211 (405)
Q Consensus 185 Gi~~~~~e~~~~~~~~~~~~l~l~Gih 211 (405)
|+ +.+.+.++++ .+..-+++.
T Consensus 160 GI--~~~n~~~~l~----aGa~~vav~ 180 (187)
T PRK07455 160 GV--TLENAQAFIQ----AGAIAVGLS 180 (187)
T ss_pred CC--CHHHHHHHHH----CCCeEEEEe
Confidence 78 8888877765 355555543
No 269
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=28.40 E-value=4.5e+02 Score=23.86 Aligned_cols=91 Identities=5% Similarity=-0.054 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCCCCceeeeeccCC-----cHHHHHHHHHcCC-eEEEc--------CHHHHHHHHhCCCCCCcEEEc
Q 037610 59 GVVVSLYNHMISNLPMIHPHYAVKCNP-----EPALLEALAALGS-NFDCG--------SRSEIEAVLLLDVSPDRIIYA 124 (405)
Q Consensus 59 ~~l~~n~~~~~~~~~~~~i~yavKaN~-----~~~vl~~l~~~G~-g~~va--------S~~E~~~a~~~G~~~~~Ii~~ 124 (405)
+.+.+.++++++...+..+.--+=+.. ....++...+.|+ .+-.+ |++.++..++.--.+-.|-..
T Consensus 102 ~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKaa 181 (211)
T TIGR00126 102 EVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKAS 181 (211)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEEe
Confidence 344556666665543321111122222 2455666677787 34333 346656555541123358888
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCH
Q 037610 125 NPCKPVSHIKYAASVGVNLTTVDSV 149 (405)
Q Consensus 125 gp~k~~~~l~~a~~~gv~~i~vds~ 149 (405)
|..++.++....++.|..++-.++-
T Consensus 182 GGirt~~~a~~~i~aGa~riGts~~ 206 (211)
T TIGR00126 182 GGVRTAEDAIAMIEAGASRIGASAG 206 (211)
T ss_pred CCCCCHHHHHHHHHHhhHHhCcchH
Confidence 8889999999999988765544443
No 270
>PRK09389 (R)-citramalate synthase; Provisional
Probab=28.14 E-value=6.9e+02 Score=25.89 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEEEecCC
Q 037610 191 QEIMPLLKAAEASGLSVVGVSFHVGS 216 (405)
Q Consensus 191 ~e~~~~~~~~~~~~l~l~Gih~H~gs 216 (405)
+-+.++++.+.+.+..-..|.=-.|.
T Consensus 143 ~~l~~~~~~~~~~Ga~~i~l~DTvG~ 168 (488)
T PRK09389 143 DFLKELYKAGIEAGADRICFCDTVGI 168 (488)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 33334444443334444444444444
No 271
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=28.03 E-value=3.4e+02 Score=28.53 Aligned_cols=12 Identities=0% Similarity=-0.022 Sum_probs=6.5
Q ss_pred eEEEcCHHHHHH
Q 037610 99 NFDCGSRSEIEA 110 (405)
Q Consensus 99 g~~vaS~~E~~~ 110 (405)
-+...+.+|++.
T Consensus 135 ~~~~~~~~e~~~ 146 (538)
T PRK15424 135 QRSYVTEEDARG 146 (538)
T ss_pred EEEecCHHHHHH
Confidence 455556666544
No 272
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=27.99 E-value=2.7e+02 Score=26.16 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=38.9
Q ss_pred HHHHHHHHHc-CC--eEEEcCHHHHHHHHhCCCCCCcEEEcCCCC-CHHHHHHHHHcCCcEEEec
Q 037610 87 PALLEALAAL-GS--NFDCGSRSEIEAVLLLDVSPDRIIYANPCK-PVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 87 ~~vl~~l~~~-G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k-~~~~l~~a~~~gv~~i~vd 147 (405)
..+++.+.+. ++ .+|..+++.++.++++|.+ |+-..... .++-++.+.++|+.++...
T Consensus 64 ~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~---iINsis~~~~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 64 VPVIKALRDQPDVPISVDTYRAEVARAALEAGAD---IINDVSGGQDPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred HHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCC---EEEECCCCCCchhHHHHHHcCCcEEEEe
Confidence 3556666665 64 7888999999999999853 55543333 5566777778887654443
No 273
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=27.94 E-value=3.2e+02 Score=28.96 Aligned_cols=52 Identities=13% Similarity=0.323 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHcCCeEEEEEEecCCCCCC-HHHH----HHHHHHHHHHHHHHHhCCC
Q 037610 191 QEIMPLLKAAEASGLSVVGVSFHVGSEATN-FAAF----RGAIAAAKAVFDTAARTSN 243 (405)
Q Consensus 191 ~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~-~~~~----~~~i~~~~~~~~~~~~~G~ 243 (405)
+.+..+++.+++.++- ..|-+.-||-... .+.| ...++.+.+.++.+++.||
T Consensus 145 e~~~~vV~~ake~~~~-IRIGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f 201 (606)
T PRK00694 145 EKFSPLVEKCKRLGKA-MRIGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCEKLDY 201 (606)
T ss_pred HHHHHHHHHHHHCCCC-EEEecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4555666777776654 3455666663211 1111 1245566677778888886
No 274
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=27.90 E-value=6.7e+02 Score=25.62 Aligned_cols=100 Identities=15% Similarity=0.033 Sum_probs=66.0
Q ss_pred EeHHHHHHHHHHHHHhCCCCceeeeeccCCc--HHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHH
Q 037610 56 MDLGVVVSLYNHMISNLPMIHPHYAVKCNPE--PALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHI 133 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~--~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l 133 (405)
=|.+.-++-+.++-..- +.+-.---|++.. ..+-+.|.+.|+-+-=..++|+..-+. +-+|.-|+.-.-.|+.+++
T Consensus 85 ~~aedA~~ii~~iv~~k-~~k~vVKsKSmvseEIgln~~Le~~G~ev~ETDLGE~IlQl~-~~~PsHIV~PAlH~~reqI 162 (459)
T COG1139 85 KDAEDAREIIGEIVGEK-NGKKVVKSKSMVSEEIGLNHYLEEKGIEVWETDLGELILQLA-GEPPSHIVAPALHKNREQI 162 (459)
T ss_pred CCHHHHHHHHHHHHhhc-cCcEEEEecchhHHHhhhHHHHHHcCCeEEEccHHHHHHHhc-CCCCcceeccccccCHHHH
Confidence 34444444444433211 3333334555553 466788888998777788999988887 6678888887778999999
Q ss_pred HHHHHcCCcEEEecCHHHHHHHHh
Q 037610 134 KYAASVGVNLTTVDSVEELDKIRN 157 (405)
Q Consensus 134 ~~a~~~gv~~i~vds~~el~~i~~ 157 (405)
..+++.-.....-|+.+||.+..+
T Consensus 163 a~if~ekl~~~~~~~~eel~~~aR 186 (459)
T COG1139 163 AEIFKEKLGYEGEDTPEELTAAAR 186 (459)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHH
Confidence 999863322222399999987665
No 275
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=27.76 E-value=6e+02 Score=25.04 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=70.9
Q ss_pred HHHHHHHHhhcCCCCCccEEEEeHH-----HHHHHHHHHHHhCCCCceeeeeccCC-cHHHHHHHHHcCC-eEEEc----
Q 037610 35 TEFMQSTILKRQEFDEVPFYLMDLG-----VVVSLYNHMISNLPMIHPHYAVKCNP-EPALLEALAALGS-NFDCG---- 103 (405)
Q Consensus 35 ~~~~~~~~~~~~~~~t~P~~v~d~~-----~l~~n~~~~~~~~~~~~i~yavKaN~-~~~vl~~l~~~G~-g~~va---- 103 (405)
.+.++.++.. ..+- -+.++|.. .+.+.++.+|+.+|+.. .+|-|= .++-++.|.+.|+ ++-|.
T Consensus 109 ~er~~~L~~a--~~~~-d~iviD~AhGhs~~~i~~ik~ir~~~p~~~---viaGNV~T~e~a~~Li~aGAD~ikVgiGpG 182 (343)
T TIGR01305 109 LEKMTSILEA--VPQL-KFICLDVANGYSEHFVEFVKLVREAFPEHT---IMAGNVVTGEMVEELILSGADIVKVGIGPG 182 (343)
T ss_pred HHHHHHHHhc--CCCC-CEEEEECCCCcHHHHHHHHHHHHhhCCCCe---EEEecccCHHHHHHHHHcCCCEEEEcccCC
Confidence 3455566543 1223 46667754 57778899999999754 488875 7888999999998 66544
Q ss_pred -------------CHHH-HH-HHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEec
Q 037610 104 -------------SRSE-IE-AVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 104 -------------S~~E-~~-~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vd 147 (405)
..-. +. .+..++-..-.|+..|..+...++-.|+..|...+.+.
T Consensus 183 SicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 183 SVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 1111 11 11112211124899999999999999999998877777
No 276
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=27.71 E-value=6e+02 Score=25.01 Aligned_cols=68 Identities=10% Similarity=-0.033 Sum_probs=44.5
Q ss_pred eeeccCCcHHHHHHHHHcCC-eEEEcC---------------HHHHHHHHh-CCCCCCcEEEcCCCCCHHHHHHHHHcCC
Q 037610 79 YAVKCNPEPALLEALAALGS-NFDCGS---------------RSEIEAVLL-LDVSPDRIIYANPCKPVSHIKYAASVGV 141 (405)
Q Consensus 79 yavKaN~~~~vl~~l~~~G~-g~~vaS---------------~~E~~~a~~-~G~~~~~Ii~~gp~k~~~~l~~a~~~gv 141 (405)
..+|--.+++.++.+.+.|+ ++.|+. +.|+..+.+ .|-+ -.|+..|...+-.++-.++..|.
T Consensus 216 vivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~-~~vi~~GGIr~G~Dv~kalaLGA 294 (344)
T cd02922 216 IVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDK-IEVYVDGGVRRGTDVLKALCLGA 294 (344)
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCC-ceEEEeCCCCCHHHHHHHHHcCC
Confidence 45776667788888888887 777655 344444332 2212 23777777788888888888887
Q ss_pred cEEEec
Q 037610 142 NLTTVD 147 (405)
Q Consensus 142 ~~i~vd 147 (405)
..+-+.
T Consensus 295 ~aV~iG 300 (344)
T cd02922 295 KAVGLG 300 (344)
T ss_pred CEEEEC
Confidence 654554
No 277
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=27.52 E-value=2.4e+02 Score=27.95 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCC---cHHHHHHHHHcCC---eEEEcCHHH---------------
Q 037610 49 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNP---EPALLEALAALGS---NFDCGSRSE--------------- 107 (405)
Q Consensus 49 ~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~---~~~vl~~l~~~G~---g~~vaS~~E--------------- 107 (405)
|| | -+++.+.+++-++.+++. -..-.++-+|| ..+.++.+.+.|+ .+.|-|..+
T Consensus 67 GT-P-s~l~~~~l~~ll~~i~~~---~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~ 141 (370)
T PRK06294 67 GT-P-SLVPPALIQDILKTLEAP---HATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKA 141 (370)
T ss_pred Cc-c-ccCCHHHHHHHHHHHHhC---CCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHH
Q ss_pred ---HHHHHhCCCC--CCcEEEcCCCCCHHHHHHHHH
Q 037610 108 ---IEAVLLLDVS--PDRIIYANPCKPVSHIKYAAS 138 (405)
Q Consensus 108 ---~~~a~~~G~~--~~~Ii~~gp~k~~~~l~~a~~ 138 (405)
++.++++|++ .=.++|.-|.-+.++++.-++
T Consensus 142 ~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~ 177 (370)
T PRK06294 142 IDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLH 177 (370)
T ss_pred HHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHH
No 278
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.43 E-value=1.1e+02 Score=29.41 Aligned_cols=84 Identities=8% Similarity=0.030 Sum_probs=49.3
Q ss_pred CCCceeeeeccCC-cHHHHHHHHHcCC------eE------------EEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHH
Q 037610 73 PMIHPHYAVKCNP-EPALLEALAALGS------NF------------DCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHI 133 (405)
Q Consensus 73 ~~~~i~yavKaN~-~~~vl~~l~~~G~------g~------------~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l 133 (405)
+++++.-.=|+-| ...+.|.....|- |+ -+.|..|+....+.-.+..+|..= +.+.+++
T Consensus 141 ~~~~I~dTRKT~PGlR~lekyAV~~GGG~nHR~gLsD~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVE--vetleea 218 (294)
T PRK06978 141 TRARILDTRKTLPGLRLAQKYAVRVGGGENQRLALYDGILIKENHIAAAGGVGAALDAAFALNAGVPVQIE--VETLAQL 218 (294)
T ss_pred CCcEEEecCCCCCchhHHHHHHHHhcCCcCcCCCCCceEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEE--cCCHHHH
Confidence 3567777777777 3444555554431 11 144667754433332222345553 3468899
Q ss_pred HHHHHcCCcEEEecCH--HHHHHHHhH
Q 037610 134 KYAASVGVNLTTVDSV--EELDKIRNW 158 (405)
Q Consensus 134 ~~a~~~gv~~i~vds~--~el~~i~~~ 158 (405)
++|++.|+..+-+|++ +++++..+.
T Consensus 219 ~eA~~aGaDiImLDnmspe~l~~av~~ 245 (294)
T PRK06978 219 ETALAHGAQSVLLDNFTLDMMREAVRV 245 (294)
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHh
Confidence 9999999888888864 555555444
No 279
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=27.15 E-value=1.9e+02 Score=20.91 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=39.8
Q ss_pred HHHHHHhCCCCCCcEEEcCCCC---CHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEec
Q 037610 107 EIEAVLLLDVSPDRIIYANPCK---PVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKS 170 (405)
Q Consensus 107 E~~~a~~~G~~~~~Ii~~gp~k---~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~ 170 (405)
-+..|++.|.....|+++-... ..+.++.+.+.|+. +..-|.+.|+++......+.+...+.+
T Consensus 7 ~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~-v~~v~~~~l~~ls~~~~hQGv~a~v~~ 72 (76)
T PF08032_consen 7 AVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIP-VYEVSKKVLDKLSDTENHQGVVAVVKP 72 (76)
T ss_dssp HHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-E-EEEE-HHHHHHCTTTSS-TTEEEEEE-
T ss_pred HHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCe-EEEeCHHHHHHHcCCCCCCeEEEEEeC
Confidence 3556777775555666654411 23567777788986 566678889999876666788887764
No 280
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.88 E-value=5.1e+02 Score=23.90 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCC--eEEEcC---HHHHHHHHhC
Q 037610 87 PALLEALAALGS--NFDCGS---RSEIEAVLLL 114 (405)
Q Consensus 87 ~~vl~~l~~~G~--g~~vaS---~~E~~~a~~~ 114 (405)
..+++.+.++|+ ++.+.. .++++...+.
T Consensus 119 ~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~ 151 (244)
T PRK13125 119 EKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL 151 (244)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 356666666775 555554 4455555544
No 281
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.75 E-value=5.1e+02 Score=23.85 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=24.5
Q ss_pred EEEcCCCCCHHHHHHHHHcCCcEEEec-----CHHHHHHHHhHCCCCeEEEEEe
Q 037610 121 IIYANPCKPVSHIKYAASVGVNLTTVD-----SVEELDKIRNWHPKSDLLIRIK 169 (405)
Q Consensus 121 Ii~~gp~k~~~~l~~a~~~gv~~i~vd-----s~~el~~i~~~~~~~~v~lRi~ 169 (405)
+-+.|...+.++++.+++.|+..+++. +.+.++.+.+.+...++.+-|.
T Consensus 76 v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD 129 (232)
T PRK13586 76 IQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSID 129 (232)
T ss_pred EEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEE
Confidence 555555566666666666655433333 3344455444443334444444
No 282
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.68 E-value=3.4e+02 Score=24.41 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=32.1
Q ss_pred EcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcE-EEecCHHHHHHHHhHCCCCeEEEEEecC
Q 037610 102 CGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNL-TTVDSVEELDKIRNWHPKSDLLIRIKSP 171 (405)
Q Consensus 102 vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~-i~vds~~el~~i~~~~~~~~v~lRi~~~ 171 (405)
|-+.++++.+.++|. +.+++ |..+++-++.+.++|+.+ .=+-+..|+....+.+-+ .+++.|.
T Consensus 67 V~~~e~a~~a~~aGA---~FivS-P~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~---~vK~FPA 130 (196)
T PF01081_consen 67 VLTAEQAEAAIAAGA---QFIVS-PGFDPEVIEYAREYGIPYIPGVMTPTEIMQALEAGAD---IVKLFPA 130 (196)
T ss_dssp --SHHHHHHHHHHT----SEEEE-SS--HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-S---EEEETTT
T ss_pred ccCHHHHHHHHHcCC---CEEEC-CCCCHHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCC---EEEEecc
Confidence 445566666666664 34443 555666666666666542 345666666665554322 4555553
No 283
>PRK13774 formimidoylglutamase; Provisional
Probab=26.59 E-value=2.5e+02 Score=27.16 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=54.4
Q ss_pred HHHHHhCCCCCCcEEEcCCC---CCHHHHHHHHHcCCcEEEecCHHH-----HH-HHHhHCC-CCeEEEEEecCCCCCCC
Q 037610 108 IEAVLLLDVSPDRIIYANPC---KPVSHIKYAASVGVNLTTVDSVEE-----LD-KIRNWHP-KSDLLIRIKSPDDSGAK 177 (405)
Q Consensus 108 ~~~a~~~G~~~~~Ii~~gp~---k~~~~l~~a~~~gv~~i~vds~~e-----l~-~i~~~~~-~~~v~lRi~~~~~~~~~ 177 (405)
+..+.+.+. +.+++..|-- .+.++++.+.+.|+.++..+.+.+ ++ .+..+.. ...+.|-+..+.- ...
T Consensus 172 ~~~i~e~~~-~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~vyvS~DiD~l-Dps 249 (311)
T PRK13774 172 FRQILEEDE-NTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDVIMFTICMDVI-DSA 249 (311)
T ss_pred HHHHHhcCC-CCCEEEEeeCCCCCCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHHhcCCeEEEEEeeCCc-Chh
Confidence 444554442 2345544332 246788888899986555555433 11 1222211 2245555554321 111
Q ss_pred ----CCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEe
Q 037610 178 ----YPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFH 213 (405)
Q Consensus 178 ----~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H 213 (405)
..+-...|+ +..|+.++++.+... -+++|+.+=
T Consensus 250 ~aPGtgtP~pgGL--t~~e~l~il~~l~~~-~~v~g~Div 286 (311)
T PRK13774 250 FAPGVSAPAVLGL--YPHTVLELAKRIIPS-DKVSSVSIA 286 (311)
T ss_pred hCCCCCCCCCCCC--CHHHHHHHHHHHHhc-CCEEEEEEE
Confidence 222367899 999999999876432 357776543
No 284
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=26.38 E-value=2.5e+02 Score=24.38 Aligned_cols=51 Identities=22% Similarity=0.138 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEEEecCCCCC-------CHHHHHHHHHHHHHHHHHHHhCC
Q 037610 191 QEIMPLLKAAEASGLSVVGVSFHVGSEAT-------NFAAFRGAIAAAKAVFDTAARTS 242 (405)
Q Consensus 191 ~e~~~~~~~~~~~~l~l~Gih~H~gs~~~-------~~~~~~~~i~~~~~~~~~~~~~G 242 (405)
+++.++.+.+++.++.+.++++....... ..+ ..+.++.+.+.++.++.+|
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg 84 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLG 84 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhC
Confidence 35666777778889999999988765431 223 4455666666776666544
No 285
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=26.34 E-value=6e+02 Score=24.56 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=53.2
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CCceeeeeccCC-------cHHHHHHHHHcCC-eEEEcC-------------HHHHH
Q 037610 52 PFYLMDLGVVVSLYNHMISNLP-MIHPHYAVKCNP-------EPALLEALAALGS-NFDCGS-------------RSEIE 109 (405)
Q Consensus 52 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKaN~-------~~~vl~~l~~~G~-g~~vaS-------------~~E~~ 109 (405)
..++-+.+.+.+-++++++..+ +.. ..+|... ..++++.+.+.|+ .+.|.. .+.+.
T Consensus 110 s~Ll~~~~~~~eiv~avr~~~~~~~p--VsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~ 187 (312)
T PRK10550 110 ATLLKDPELIYQGAKAMREAVPAHLP--VTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIG 187 (312)
T ss_pred hHhhcCHHHHHHHHHHHHHhcCCCcc--eEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHH
Confidence 4567888889999999998775 322 3456321 4578899999998 677743 11222
Q ss_pred HHHhCCCCCCcEEEcCCCCCHHHHHHHHH-cCCc
Q 037610 110 AVLLLDVSPDRIIYANPCKPVSHIKYAAS-VGVN 142 (405)
Q Consensus 110 ~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~-~gv~ 142 (405)
.+++. ++- .++.+|..++.++.+.+++ .|+.
T Consensus 188 ~ik~~-~~i-PVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 188 EIRQR-LTI-PVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred HHHhh-cCC-cEEEeCCcCCHHHHHHHHhccCCC
Confidence 23322 222 2666666667777776664 3443
No 286
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=26.21 E-value=3e+02 Score=27.34 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=53.5
Q ss_pred cCCeEEEcCHHHHHHHHhCCCCCCcEEEcC------CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeE
Q 037610 96 LGSNFDCGSRSEIEAVLLLDVSPDRIIYAN------PCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDL 164 (405)
Q Consensus 96 ~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~g------p~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v 164 (405)
=||-+.|...++++.+.++-..++.|+.+- |+ +...|..|...|..+-.|-|.-+.-+|++.+|+.++
T Consensus 66 PGCPVCVtp~~~ID~ai~LA~~~~vii~TfGDmlRVPG-s~~SL~~ara~GadVriVYSpldAl~iA~~nPdk~V 139 (369)
T TIGR00075 66 PGCPVCVTPMERIDEAIELATIPEIIFCTFGDMMRVPG-SGGSLLQARAEGADVRIVYSPMDALKIAKENPDRKV 139 (369)
T ss_pred CCCCcEeCcHHHHHHHHHHhCCCCeEEEecchhccCCC-CCCCHHHHHhCCCCEEEEeCHHHHHHHHHHCCCCeE
Confidence 378899999999999998865666666551 22 345788888888876689999999999998887665
No 287
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=26.18 E-value=50 Score=24.36 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=15.4
Q ss_pred CC-CCCCCCEEEEcCCCcccc
Q 037610 358 LP-ELEVNDWLVFSEMGAYTT 377 (405)
Q Consensus 358 lp-~l~~GD~l~~~~~GAY~~ 377 (405)
|| .+++||+|.+.+.|.|+.
T Consensus 30 LP~~~keGDvl~i~~~~~~~~ 50 (71)
T PF11213_consen 30 LPEGAKEGDVLEIGEDGSIEI 50 (71)
T ss_pred CCCCCCcccEEEECCCceEEE
Confidence 66 799999998856666654
No 288
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=25.87 E-value=5.1e+02 Score=23.58 Aligned_cols=78 Identities=13% Similarity=0.003 Sum_probs=55.3
Q ss_pred CCcHHHHHHHHHhhcCCCCCccEE----EEeHHHHHHHHHHHHHhCCCCceeeeeccCCc---HHHHHHHHHcCCe---E
Q 037610 31 KDELTEFMQSTILKRQEFDEVPFY----LMDLGVVVSLYNHMISNLPMIHPHYAVKCNPE---PALLEALAALGSN---F 100 (405)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~t~P~~----v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~---~~vl~~l~~~G~g---~ 100 (405)
|.+..++++++..-. +. |+. -.|.+.+.+..+++.+..|+ ..+|--.. .+.++.|.++|+. -
T Consensus 36 g~~~~~~~~~i~~~~---~g-~vs~qv~~~~~~~mi~~a~~l~~~~~~----i~iKIP~T~~Gl~A~~~L~~~Gi~v~~T 107 (213)
T TIGR00875 36 GRSFWEVLKEIQEAV---EG-PVSAETISLDAEGMVEEAKELAKLAPN----IVVKIPMTSEGLKAVKILKKEGIKTNVT 107 (213)
T ss_pred CCCHHHHHHHHHHhc---CC-cEEEEEeeCCHHHHHHHHHHHHHhCCC----eEEEeCCCHHHHHHHHHHHHCCCceeEE
Confidence 455677777775431 23 554 26788888889999888775 33565443 6788888889974 4
Q ss_pred EEcCHHHHHHHHhCCC
Q 037610 101 DCGSRSEIEAVLLLDV 116 (405)
Q Consensus 101 ~vaS~~E~~~a~~~G~ 116 (405)
.|-|...+..+.++|.
T Consensus 108 ~vfs~~Qa~~Aa~aGa 123 (213)
T TIGR00875 108 LVFSAAQALLAAKAGA 123 (213)
T ss_pred EecCHHHHHHHHHcCC
Confidence 5889999999988874
No 289
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.78 E-value=5.3e+02 Score=23.72 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=32.6
Q ss_pred EEEcCCCCCHHHHHHHHHcCCcEEEecC-----HHHHHHHHhHCCCCeEEEEEe
Q 037610 121 IIYANPCKPVSHIKYAASVGVNLTTVDS-----VEELDKIRNWHPKSDLLIRIK 169 (405)
Q Consensus 121 Ii~~gp~k~~~~l~~a~~~gv~~i~vds-----~~el~~i~~~~~~~~v~lRi~ 169 (405)
|.+.|...+.++++.+++.|+..+++.| .+.++.+.+.+++ ++.+-++
T Consensus 79 i~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~-~ivvslD 131 (234)
T PRK13587 79 IEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPG-RIYLSVD 131 (234)
T ss_pred EEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCC-CEEEEEE
Confidence 7788888888888888888876555554 3446666666653 3555554
No 290
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=25.75 E-value=6e+02 Score=24.33 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=19.7
Q ss_pred CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHH
Q 037610 98 SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAAS 138 (405)
Q Consensus 98 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~ 138 (405)
+-+||-|++|++.+.++|. +.|.+.+ .++++++++++
T Consensus 192 IeVEv~tleqa~ea~~aga--DiI~LDn--~~~e~l~~av~ 228 (284)
T PRK06096 192 IVVEADTPKEAIAALRAQP--DVLQLDK--FSPQQATEIAQ 228 (284)
T ss_pred EEEECCCHHHHHHHHHcCC--CEEEECC--CCHHHHHHHHH
Confidence 3566666666666666654 3333322 35566666543
No 291
>PRK15452 putative protease; Provisional
Probab=25.72 E-value=6e+02 Score=25.99 Aligned_cols=39 Identities=5% Similarity=0.152 Sum_probs=28.6
Q ss_pred HHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecC
Q 037610 133 IKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSP 171 (405)
Q Consensus 133 l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~ 171 (405)
++.+.+.|+.-+.|-++..+..+.+..|+..+.+-....
T Consensus 82 l~~l~~~gvDgvIV~d~G~l~~~ke~~p~l~ih~stqln 120 (443)
T PRK15452 82 LEPVIAMKPDALIMSDPGLIMMVREHFPEMPIHLSVQAN 120 (443)
T ss_pred HHHHHhCCCCEEEEcCHHHHHHHHHhCCCCeEEEEeccc
Confidence 345557788778899999999999887776665555443
No 292
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=25.71 E-value=2.3e+02 Score=26.39 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEE-EcCCCCCHHHHHHHHH
Q 037610 60 VVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRII-YANPCKPVSHIKYAAS 138 (405)
Q Consensus 60 ~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii-~~gp~k~~~~l~~a~~ 138 (405)
.+-+.+.+.-...+++++..++-.++...- ...+.|+ ....+.+|+ ++ + ++-++ |+.|....+.++.|++
T Consensus 12 ~mG~~i~~~l~~~~~~elvav~d~~~~~~~--~~~~~~i-~~~~dl~~l---l~-~--~DvVid~t~p~~~~~~~~~al~ 82 (257)
T PRK00048 12 RMGRELIEAVEAAEDLELVAAVDRPGSPLV--GQGALGV-AITDDLEAV---LA-D--ADVLIDFTTPEATLENLEFALE 82 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEecCCcccc--ccCCCCc-cccCCHHHh---cc-C--CCEEEECCCHHHHHHHHHHHHH
Confidence 334443333333466777666655543211 1111222 133455554 32 3 34455 7777766788889999
Q ss_pred cCCcEEEec----CHHHHHHHHhHCCCCeEEEEEecC
Q 037610 139 VGVNLTTVD----SVEELDKIRNWHPKSDLLIRIKSP 171 (405)
Q Consensus 139 ~gv~~i~vd----s~~el~~i~~~~~~~~v~lRi~~~ 171 (405)
+|+.+ .+. |.++++.|.+...+ +.+-+.++
T Consensus 83 ~G~~v-vigttG~s~~~~~~l~~aa~~--~~v~~s~n 116 (257)
T PRK00048 83 HGKPL-VIGTTGFTEEQLAELEEAAKK--IPVVIAPN 116 (257)
T ss_pred cCCCE-EEECCCCCHHHHHHHHHHhcC--CCEEEECc
Confidence 99974 443 58888888885443 44445443
No 293
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=25.67 E-value=4.1e+02 Score=22.47 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-eEEEcCH-------------HHHHHHHhCCCCCCcEEEcCC
Q 037610 61 VVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGS-NFDCGSR-------------SEIEAVLLLDVSPDRIIYANP 126 (405)
Q Consensus 61 l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~-------------~E~~~a~~~G~~~~~Ii~~gp 126 (405)
+.+.++.+++.+++..+...+..+...... .+.+.|+ .+.+... .+....++.... -.|+..|.
T Consensus 101 ~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~-~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pi~~~GG 178 (200)
T cd04722 101 DLELIRELREAVPDVKVVVKLSPTGELAAA-AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSK-VPVIAGGG 178 (200)
T ss_pred HHHHHHHHHHhcCCceEEEEECCCCccchh-hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCC-CCEEEECC
Confidence 667777888777655555444443322211 1566665 4433220 111222222232 34777887
Q ss_pred CCCHHHHHHHHHcCCcEEEec
Q 037610 127 CKPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 127 ~k~~~~l~~a~~~gv~~i~vd 147 (405)
..+.+.+..+++.|+..+.+.
T Consensus 179 i~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 179 INDPEDAAEALALGADGVIVG 199 (200)
T ss_pred CCCHHHHHHHHHhCCCEEEec
Confidence 777788988888887655543
No 294
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=25.60 E-value=6.5e+02 Score=24.72 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=30.0
Q ss_pred ChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHH
Q 037610 189 HPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAK 232 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~ 232 (405)
+.+++.+.++.+++.++.-+.+++-+|-...+.+.+.+.++.+.
T Consensus 133 ~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~ 176 (374)
T PRK05799 133 TFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVV 176 (374)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 67788888888888777655667777765556666666555443
No 295
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=25.47 E-value=5e+02 Score=24.41 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=43.3
Q ss_pred cHHHHHHHHHcCC--eEEEcCHHHHHHHHhCCCCCCcEEEcCCCCC-----H---HHHHHHHHcCCcEEE---ecCHHHH
Q 037610 86 EPALLEALAALGS--NFDCGSRSEIEAVLLLDVSPDRIIYANPCKP-----V---SHIKYAASVGVNLTT---VDSVEEL 152 (405)
Q Consensus 86 ~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~-----~---~~l~~a~~~gv~~i~---vds~~el 152 (405)
..+++....++|. =.+|.+.+|++.|+++|- ..|=+|+-... . +.|...+..++.++. +.+.+++
T Consensus 145 l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga--~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv 222 (254)
T COG0134 145 LEELVDRAHELGMEVLVEVHNEEELERALKLGA--KIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDV 222 (254)
T ss_pred HHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCC--CEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Confidence 5678888888887 699999999999999764 33334443221 1 112222334442221 3457788
Q ss_pred HHHHhH
Q 037610 153 DKIRNW 158 (405)
Q Consensus 153 ~~i~~~ 158 (405)
+++.+.
T Consensus 223 ~~l~~~ 228 (254)
T COG0134 223 RRLAKA 228 (254)
T ss_pred HHHHHc
Confidence 877765
No 296
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=25.43 E-value=4.9e+02 Score=23.21 Aligned_cols=85 Identities=6% Similarity=-0.078 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCC--CceeeeeccCC---cHHHHHHHHHcCC-eEEEc--------CHHHHHHHHhCCCCCCcEEEc
Q 037610 59 GVVVSLYNHMISNLPM--IHPHYAVKCNP---EPALLEALAALGS-NFDCG--------SRSEIEAVLLLDVSPDRIIYA 124 (405)
Q Consensus 59 ~~l~~n~~~~~~~~~~--~~i~yavKaN~---~~~vl~~l~~~G~-g~~va--------S~~E~~~a~~~G~~~~~Ii~~ 124 (405)
+.+.+.+.++++...+ +++.+..-... ....++...+.|+ .+-++ +++.++..++.--.+-.|...
T Consensus 101 ~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~a 180 (203)
T cd00959 101 EAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAA 180 (203)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEe
Confidence 3455666666665443 22222211111 3455677777887 34443 235445544442123358888
Q ss_pred CCCCCHHHHHHHHHcCCcE
Q 037610 125 NPCKPVSHIKYAASVGVNL 143 (405)
Q Consensus 125 gp~k~~~~l~~a~~~gv~~ 143 (405)
|..|+.++....++.|..+
T Consensus 181 GGikt~~~~l~~~~~g~~r 199 (203)
T cd00959 181 GGIRTLEDALAMIEAGATR 199 (203)
T ss_pred CCCCCHHHHHHHHHhChhh
Confidence 8889999999988888653
No 297
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=25.43 E-value=3.1e+02 Score=26.63 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=32.1
Q ss_pred cCCcHHHHHHHHHcCC--eEEEcCHHHHHHHHhCCCCCCcEEEcCC
Q 037610 83 CNPEPALLEALAALGS--NFDCGSRSEIEAVLLLDVSPDRIIYANP 126 (405)
Q Consensus 83 aN~~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp 126 (405)
-++...+++.+.+.|+ ...|.|..|++.+.+.|.+ -|+.-|+
T Consensus 122 G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D--~iv~qG~ 165 (330)
T PF03060_consen 122 GLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGAD--AIVAQGP 165 (330)
T ss_dssp SSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-S--EEEEE-T
T ss_pred ccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCC--EEEEecc
Confidence 3566789999999997 7899999999999999974 4776654
No 298
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.35 E-value=5.2e+02 Score=23.50 Aligned_cols=50 Identities=4% Similarity=0.143 Sum_probs=33.9
Q ss_pred cEEEcCCCCCHHHHHHHHHcCCcEEEecCHHH-----HHHHHhHCCCCeEEEEEe
Q 037610 120 RIIYANPCKPVSHIKYAASVGVNLTTVDSVEE-----LDKIRNWHPKSDLLIRIK 169 (405)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~e-----l~~i~~~~~~~~v~lRi~ 169 (405)
.++++|...+.++++.+++.|+..+++.+... ++.+.+..+..++.+-++
T Consensus 78 ~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid 132 (241)
T PRK13585 78 PVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLD 132 (241)
T ss_pred cEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEE
Confidence 47778888888889999988887677776443 455555554445555444
No 299
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=25.27 E-value=4.3e+02 Score=25.96 Aligned_cols=96 Identities=18% Similarity=0.132 Sum_probs=52.3
Q ss_pred HHHHHHHHcCC---eEEEcCHHHHHHHHh--CCCCCCcEEEcCCCCCHHHHHHHHHcCCc--EE---EecCHHHHHHHHh
Q 037610 88 ALLEALAALGS---NFDCGSRSEIEAVLL--LDVSPDRIIYANPCKPVSHIKYAASVGVN--LT---TVDSVEELDKIRN 157 (405)
Q Consensus 88 ~vl~~l~~~G~---g~~vaS~~E~~~a~~--~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~--~i---~vds~~el~~i~~ 157 (405)
+=++.|++.|| .+.|-+.++++.+.+ .+.+-+ ++-.-. .+......|++.|+. +| |+.+.+.++.+.+
T Consensus 38 ~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iP-lVADIH-Fd~~lAl~a~~~g~dkiRINPGNig~~e~v~~vv~ 115 (346)
T TIGR00612 38 AQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVP-LVADIH-FDYRLAALAMAKGVAKVRINPGNIGFRERVRDVVE 115 (346)
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCC-EEEeeC-CCcHHHHHHHHhccCeEEECCCCCCCHHHHHHHHH
Confidence 33455667776 566666666655433 345443 332211 122233344565543 23 5667788888888
Q ss_pred HCCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 037610 158 WHPKSDLLIRIKSPDDSGAKYPLDSKYGA 186 (405)
Q Consensus 158 ~~~~~~v~lRi~~~~~~~~~~~~~srfGi 186 (405)
.+++.++.+||-.+-+. ..-+.-.|+|-
T Consensus 116 ~ak~~~ipIRIGVN~GS-L~~~~~~kyg~ 143 (346)
T TIGR00612 116 KARDHGKAMRIGVNHGS-LERRLLEKYGD 143 (346)
T ss_pred HHHHCCCCEEEecCCCC-CcHHHHHHcCC
Confidence 77777788888654322 11112258884
No 300
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=25.27 E-value=6.2e+02 Score=24.34 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=53.1
Q ss_pred EEeHHHHHHHHHHHHHhCCCCceeeeeccC--------CcHHHHHHHHHcCC-eEEEcC------------HHHHHHHHh
Q 037610 55 LMDLGVVVSLYNHMISNLPMIHPHYAVKCN--------PEPALLEALAALGS-NFDCGS------------RSEIEAVLL 113 (405)
Q Consensus 55 v~d~~~l~~n~~~~~~~~~~~~i~yavKaN--------~~~~vl~~l~~~G~-g~~vaS------------~~E~~~a~~ 113 (405)
.-+.+.+.+-++.+++..+ +-..+|.. ...++++.+.+.|+ .+.|.. .+.+..+++
T Consensus 113 ~~~~~~~~ei~~~vr~~~~---~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~ 189 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVD---IPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQ 189 (319)
T ss_pred hCCHHHHHHHHHHHHhhcC---CCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHH
Confidence 3466777777777777653 22456652 13578888888997 666642 122223333
Q ss_pred CCCCCCcEEEcCCCCCHHHHHHHHH-cCCcEEEe
Q 037610 114 LDVSPDRIIYANPCKPVSHIKYAAS-VGVNLTTV 146 (405)
Q Consensus 114 ~G~~~~~Ii~~gp~k~~~~l~~a~~-~gv~~i~v 146 (405)
. ++- .|+.+|...+.+++..+++ .|+..+.+
T Consensus 190 ~-~~i-pvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 190 A-VRI-PVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred c-CCC-cEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 2 332 4778888888888888884 55654444
No 301
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=25.24 E-value=4.1e+02 Score=28.85 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=25.3
Q ss_pred HHHHHHHcCCeEEEEEEecCCCCCCH-HHH----HHHHHHHHHHHHHHHhCCC
Q 037610 196 LLKAAEASGLSVVGVSFHVGSEATNF-AAF----RGAIAAAKAVFDTAARTSN 243 (405)
Q Consensus 196 ~~~~~~~~~l~l~Gih~H~gs~~~~~-~~~----~~~i~~~~~~~~~~~~~G~ 243 (405)
+++.+++.++- ..|-+.-||-.... +.| ...++.+.+.++.+++.|+
T Consensus 215 ~v~~ak~~~~~-iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f 266 (733)
T PLN02925 215 LVEKCKKYGRA-MRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDY 266 (733)
T ss_pred HHHHHHHCCCC-EEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCC
Confidence 55666666654 34556666631110 111 1245556667777788886
No 302
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=25.14 E-value=6.3e+02 Score=26.06 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=63.6
Q ss_pred HHHHHhCCCCCCc--EEEcCCCCC-------HHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCC--CC
Q 037610 108 IEAVLLLDVSPDR--IIYANPCKP-------VSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDS--GA 176 (405)
Q Consensus 108 ~~~a~~~G~~~~~--Ii~~gp~k~-------~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~--~~ 176 (405)
++++...|-+.++ +++.|...+ +..++.+.++=.. + =..++|..+.++.+....++++|.+-.+. ..
T Consensus 122 l~qL~~igh~~~KvEliimGGTFta~~~~yqe~Fi~~~~~amn~-f-~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee 199 (515)
T COG1243 122 LKQLETIGHTSDKVELIIMGGTFTALSLEYQEWFLKVALKAMND-F-GYDLEEAQRKNETAELRCVGITIETRPDYIDEE 199 (515)
T ss_pred HHHHHHcCCCcceEEEEEecccccCCCHHHHHHHHHHHHHhhhc-c-chhHHHHHHhhcccccceeEEEEecCccccCHH
Confidence 5667777876664 444444333 3445555543222 2 23388888888877777889999864432 00
Q ss_pred CCC----------------------CCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCCC
Q 037610 177 KYP----------------------LDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATN 220 (405)
Q Consensus 177 ~~~----------------------~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~ 220 (405)
.++ ..++=|- +.+++.+..+.++..++. +|.|...|-...|
T Consensus 200 ~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGH--tvedv~~a~rLlKd~GfK-v~~HiMpGLPgs~ 262 (515)
T COG1243 200 HLDQMLKYGVTRVELGVQSIYDDVLERTKRGH--TVEDVVEATRLLKDAGFK-VGYHIMPGLPGSD 262 (515)
T ss_pred HHHHHHhcCCcEEEEeeeeHHHHHHHHhcCCc--cHHHHHHHHHHHHhcCcE-EEEEecCCCCCCC
Confidence 000 0122355 557777777888888887 5677777654333
No 303
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=25.05 E-value=6.8e+02 Score=24.73 Aligned_cols=53 Identities=21% Similarity=0.118 Sum_probs=37.4
Q ss_pred EEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHh
Q 037610 101 DCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRN 157 (405)
Q Consensus 101 ~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~ 157 (405)
...+...++.+.++|+. -.+|+ ..++++++.+.+.||.-+.-|..+.+.++.+
T Consensus 209 ~~lt~~~v~~~~~~Gl~--V~vWT--VN~~~~~~~l~~~GVdgIiTD~P~~l~~l~~ 261 (351)
T cd08608 209 TQASAQEIRDYSASNLS--VNLYT--VNEPWLYSLLWCSGVPSVTSDASHVLRKVPF 261 (351)
T ss_pred hhcCHHHHHHHHHCCCE--EEEEe--cCCHHHHHHHHHCCCCEEEECCHHHHHHhhh
Confidence 34577778888888873 34454 3357788888888887777888887776653
No 304
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.96 E-value=7.8e+02 Score=25.45 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=58.9
Q ss_pred cHHHHHHHHHhhcCCCCCccEEEEeH-----HHHHHHHHHHHHhCCCCceeeeeccC-CcHHHHHHHHHcCC-eEE--Ec
Q 037610 33 ELTEFMQSTILKRQEFDEVPFYLMDL-----GVVVSLYNHMISNLPMIHPHYAVKCN-PEPALLEALAALGS-NFD--CG 103 (405)
Q Consensus 33 ~~~~~~~~~~~~~~~~~t~P~~v~d~-----~~l~~n~~~~~~~~~~~~i~yavKaN-~~~~vl~~l~~~G~-g~~--va 103 (405)
+..+.++.++.. +- ...++|. ..+.+.++++|+.+|+..++. -| ...+-++.|.+.|+ ++- +.
T Consensus 227 ~~~~~a~~Lv~a----Gv-d~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~a---gnv~t~~~a~~l~~aGad~v~vgig 298 (479)
T PRK07807 227 DVAAKARALLEA----GV-DVLVVDTAHGHQEKMLEALRAVRALDPGVPIVA---GNVVTAEGTRDLVEAGADIVKVGVG 298 (479)
T ss_pred hHHHHHHHHHHh----CC-CEEEEeccCCccHHHHHHHHHHHHHCCCCeEEe---eccCCHHHHHHHHHcCCCEEEECcc
Confidence 445555555532 23 3455554 346666777777777765542 12 24455666667665 333 11
Q ss_pred C-------------------HHHHH-HHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecC
Q 037610 104 S-------------------RSEIE-AVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDS 148 (405)
Q Consensus 104 S-------------------~~E~~-~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds 148 (405)
+ ..|+. .+++.|+ .+|-.|..+++.++..|+..|...+.+.+
T Consensus 299 ~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~---~via~ggi~~~~~~~~al~~ga~~v~~g~ 360 (479)
T PRK07807 299 PGAMCTTRMMTGVGRPQFSAVLECAAAARELGA---HVWADGGVRHPRDVALALAAGASNVMIGS 360 (479)
T ss_pred CCcccccccccCCchhHHHHHHHHHHHHHhcCC---cEEecCCCCCHHHHHHHHHcCCCeeeccH
Confidence 1 11111 1223343 37777888888888888888876566665
No 305
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=24.90 E-value=1.3e+02 Score=28.90 Aligned_cols=114 Identities=12% Similarity=0.169 Sum_probs=64.2
Q ss_pred CCceeeeeccCC-cHHHHHHHHHcC------CeE-E-----------EcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHH
Q 037610 74 MIHPHYAVKCNP-EPALLEALAALG------SNF-D-----------CGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIK 134 (405)
Q Consensus 74 ~~~i~yavKaN~-~~~vl~~l~~~G------~g~-~-----------vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~ 134 (405)
++++.-.=|+-| ...+.+.....| .|+ | +.|..++....+.-.+..+|..- +-+.+++.
T Consensus 145 ~~~i~~TRKT~Pg~R~l~k~AV~~GGG~~HR~gLsd~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVE--v~sleea~ 222 (296)
T PRK09016 145 NTQLLDTRKTLPGLRSALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVE--VENLDELD 222 (296)
T ss_pred CeEEEecCCCCCchhHHHHHHHHhcCcccccCCchhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEE--eCCHHHHH
Confidence 567777777777 344555555443 121 1 23555555433333443445553 34789999
Q ss_pred HHHHcCCcEEEecCHH--HHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEE
Q 037610 135 YAASVGVNLTTVDSVE--ELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGV 210 (405)
Q Consensus 135 ~a~~~gv~~i~vds~~--el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gi 210 (405)
+|++.|+.++-+|+++ +++++.+..+ .++.|-.. | |+ +.+.+.+..+ .++++..+
T Consensus 223 ea~~~gaDiI~LDn~s~e~~~~av~~~~-~~~~ieaS-----G---------GI--~~~ni~~yA~----tGVD~Is~ 279 (296)
T PRK09016 223 QALKAGADIIMLDNFTTEQMREAVKRTN-GRALLEVS-----G---------NV--TLETLREFAE----TGVDFISV 279 (296)
T ss_pred HHHHcCCCEEEeCCCChHHHHHHHHhhc-CCeEEEEE-----C---------CC--CHHHHHHHHh----cCCCEEEe
Confidence 9999999988899764 4544444332 23333332 1 68 7776665543 45555443
No 306
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=24.85 E-value=81 Score=29.47 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=28.0
Q ss_pred CCCCCCCChhhHHHHHHHHHH------cCCeEEEE-EEecCCCC
Q 037610 182 SKYGAGHHPQEIMPLLKAAEA------SGLSVVGV-SFHVGSEA 218 (405)
Q Consensus 182 srfGi~~~~~e~~~~~~~~~~------~~l~l~Gi-h~H~gs~~ 218 (405)
.||-+ ++++..++.+.++. .++.++|+ |+|.++..
T Consensus 62 ~r~ei--dPee~~~a~~ea~~~~~~~~rgl~vVGwYHSHP~~~a 103 (244)
T cd08068 62 DRVEI--SPEQLSAASTEAERLTEETGRPMRVVGWYHSHPHITV 103 (244)
T ss_pred ceEEe--CHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCCCC
Confidence 68889 89988777777666 78999997 88887753
No 307
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.80 E-value=5.5e+02 Score=23.65 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCceeeee---------------------ccCCcHHHHHHHHHcCC-eEEEcCHH----------HHHH
Q 037610 63 SLYNHMISNLPMIHPHYAV---------------------KCNPEPALLEALAALGS-NFDCGSRS----------EIEA 110 (405)
Q Consensus 63 ~n~~~~~~~~~~~~i~yav---------------------KaN~~~~vl~~l~~~G~-g~~vaS~~----------E~~~ 110 (405)
+.++++.+.++.-++..++ ......+.++.+.+.|+ .+-+.+.+ |+..
T Consensus 111 ~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~ 190 (253)
T PRK02083 111 ELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTR 190 (253)
T ss_pred HHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHH
Q ss_pred HHhCCCCCCcEEEcCCCCCHHHHHHHHHc-CCcEEEecCH
Q 037610 111 VLLLDVSPDRIIYANPCKPVSHIKYAASV-GVNLTTVDSV 149 (405)
Q Consensus 111 a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~-gv~~i~vds~ 149 (405)
....-.+-+ ++.+|...+.+++..+++. |+.-+.+.+.
T Consensus 191 ~~~~~~~ip-via~GGv~s~~d~~~~~~~~G~~gvivg~a 229 (253)
T PRK02083 191 AVSDAVNVP-VIASGGAGNLEHFVEAFTEGGADAALAASI 229 (253)
T ss_pred HHHhhCCCC-EEEECCCCCHHHHHHHHHhCCccEEeEhHH
No 308
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=24.73 E-value=3.7e+02 Score=26.52 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCC
Q 037610 130 VSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPD 172 (405)
Q Consensus 130 ~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~ 172 (405)
.+.++.+.+.|+..+.+.++.-+..+.+.+|+.++++-.....
T Consensus 82 ~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v 124 (347)
T COG0826 82 ERYLDRLVELGVDAVIVADPGLIMLARERGPDLPIHVSTQANV 124 (347)
T ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHHHHhCCCCcEEEeeeEec
Confidence 4677777888888788888888888888888877776665544
No 309
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=24.69 E-value=1.7e+02 Score=27.17 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHc--CCeEEEEEEecCCCCCCHHHHHH
Q 037610 190 PQEIMPLLKAAEAS--GLSVVGVSFHVGSEATNFAAFRG 226 (405)
Q Consensus 190 ~~e~~~~~~~~~~~--~l~l~Gih~H~gs~~~~~~~~~~ 226 (405)
.+...++++.+++. .+.-+|++.|+.....+.+.+.+
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~ 173 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRA 173 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHH
Confidence 34556677776664 47889999998764434443333
No 310
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.64 E-value=5.6e+02 Score=23.68 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHcCC-eEEEc-------------CHHHHHHHHhC----CCCCCcEEEcCCCCC-----------------
Q 037610 85 PEPALLEALAALGS-NFDCG-------------SRSEIEAVLLL----DVSPDRIIYANPCKP----------------- 129 (405)
Q Consensus 85 ~~~~vl~~l~~~G~-g~~va-------------S~~E~~~a~~~----G~~~~~Ii~~gp~k~----------------- 129 (405)
+..+.++.+++.|. ++|.. +..++..+++. |+.-.-+.+.+...-
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~ 96 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIM 96 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHcCCcEEEecCH----------------HHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhH
Q 037610 130 VSHIKYAASVGVNLTTVDSV----------------EELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEI 193 (405)
Q Consensus 130 ~~~l~~a~~~gv~~i~vds~----------------~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~ 193 (405)
...++.|.+.|+..+++... +.++.+.+.+.+..+.|-+.+-. ..|.- +.+++
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~---------~~~~~--~~~~~ 165 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMD---------TPFMN--SISKW 165 (284)
T ss_pred HHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecC---------ccccC--CHHHH
Q ss_pred HHHHHHHHHcCCeEE
Q 037610 194 MPLLKAAEASGLSVV 208 (405)
Q Consensus 194 ~~~~~~~~~~~l~l~ 208 (405)
..+++.+..+++.+.
T Consensus 166 ~~l~~~v~~~~~~~~ 180 (284)
T PRK13210 166 KKWDKEIDSPWLTVY 180 (284)
T ss_pred HHHHHHcCCCceeEE
No 311
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.64 E-value=3.4e+02 Score=24.50 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=70.1
Q ss_pred EeHHHHHHHHHHHHHh-CCCCceeeeeccCCcHHHHHHHHHc--CC--eE-EEcCHHHHHHHHhCCCCCCcEEEcCCCCC
Q 037610 56 MDLGVVVSLYNHMISN-LPMIHPHYAVKCNPEPALLEALAAL--GS--NF-DCGSRSEIEAVLLLDVSPDRIIYANPCKP 129 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~-~~~~~i~yavKaN~~~~vl~~l~~~--G~--g~-~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 129 (405)
.+.+...+.++.+.+. ++-+++.+. +-...+.++.+.+. ++ |+ .|-+.++++.+.++|. +.++ .|+.+
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~--tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA---~Fiv-SP~~~ 86 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLR--TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS---RFIV-SPGTT 86 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC--CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC---CEEE-CCCCC
Confidence 4455566666665543 233444432 32345566666543 22 42 4667888999999986 4665 57789
Q ss_pred HHHHHHHHHcCCc-EEEecCHHHHHHHHhHCCCCeEEEEEecCC
Q 037610 130 VSHIKYAASVGVN-LTTVDSVEELDKIRNWHPKSDLLIRIKSPD 172 (405)
Q Consensus 130 ~~~l~~a~~~gv~-~i~vds~~el~~i~~~~~~~~v~lRi~~~~ 172 (405)
++-++.+.++|+. +.=+-+..|+....+.+-+ .+++.|..
T Consensus 87 ~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~---~vK~FPa~ 127 (201)
T PRK06015 87 QELLAAANDSDVPLLPGAATPSEVMALREEGYT---VLKFFPAE 127 (201)
T ss_pred HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCC---EEEECCch
Confidence 9999999999985 3466788998887776532 57888754
No 312
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=24.61 E-value=5.9e+02 Score=23.91 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=9.6
Q ss_pred HHHHHHHHHcCC-eEEE
Q 037610 87 PALLEALAALGS-NFDC 102 (405)
Q Consensus 87 ~~vl~~l~~~G~-g~~v 102 (405)
..+++.|.+.|+ .+|+
T Consensus 23 ~~i~~~L~~~Gv~~IE~ 39 (273)
T cd07941 23 LRIARKLDELGVDYIEG 39 (273)
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 456666666665 5555
No 313
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=24.53 E-value=5.9e+02 Score=23.90 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=20.0
Q ss_pred ChhhHHHHHHHHHHc-C-CeEEEEEEecCC
Q 037610 189 HPQEIMPLLKAAEAS-G-LSVVGVSFHVGS 216 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~-l~l~Gih~H~gs 216 (405)
.++++.++++.+++. . +. .|+|+|---
T Consensus 178 ~P~~v~~lv~~l~~~~~~~~-l~~H~Hnd~ 206 (273)
T cd07941 178 LPHEIAEIVKEVRERLPGVP-LGIHAHNDS 206 (273)
T ss_pred CHHHHHHHHHHHHHhCCCCe-eEEEecCCC
Confidence 888999999988763 3 54 688888544
No 314
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.51 E-value=1.5e+02 Score=28.32 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=64.8
Q ss_pred CCCceeeeeccCC-cHHHHHHHHHcCCe----EE-------------EcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHH
Q 037610 73 PMIHPHYAVKCNP-EPALLEALAALGSN----FD-------------CGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIK 134 (405)
Q Consensus 73 ~~~~i~yavKaN~-~~~vl~~l~~~G~g----~~-------------vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~ 134 (405)
++++++-.=|+-| ...+.+.....|-| +. ..+..++....+.-.+..+|..=- -+.+++.
T Consensus 119 ~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~vLikdnHi~~~~i~~av~~~r~~~~~~kIeVEv--~~leea~ 196 (278)
T PRK08385 119 PKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAILIKDNHLALVPLEEAIRRAKEFSVYKVVEVEV--ESLEDAL 196 (278)
T ss_pred CCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcccEEEccCHHHHHHHHHHHHHHHHhCCCCcEEEEe--CCHHHHH
Confidence 3567777777776 33444444444311 11 124555444443333334566543 4789999
Q ss_pred HHHHcCCcEEEecCH--HHHHHHHhH----CCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEE
Q 037610 135 YAASVGVNLTTVDSV--EELDKIRNW----HPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVV 208 (405)
Q Consensus 135 ~a~~~gv~~i~vds~--~el~~i~~~----~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~ 208 (405)
+|++.|+..+-+|++ ++++++.+. +.+.++.+=.. | |+ +.+.+.+..+ .++++.
T Consensus 197 ~a~~agaDiI~LDn~~~e~l~~~v~~l~~~~~~~~~~leaS-----G---------GI--~~~ni~~yA~----tGvD~I 256 (278)
T PRK08385 197 KAAKAGADIIMLDNMTPEEIREVIEALKREGLRERVKIEVS-----G---------GI--TPENIEEYAK----LDVDVI 256 (278)
T ss_pred HHHHcCcCEEEECCCCHHHHHHHHHHHHhcCcCCCEEEEEE-----C---------CC--CHHHHHHHHH----cCCCEE
Confidence 999999988888875 455444432 11233444333 1 67 7777666543 456655
Q ss_pred EEEE
Q 037610 209 GVSF 212 (405)
Q Consensus 209 Gih~ 212 (405)
....
T Consensus 257 s~ga 260 (278)
T PRK08385 257 SLGA 260 (278)
T ss_pred EeCh
Confidence 5443
No 315
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=24.46 E-value=4.5e+02 Score=22.44 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCCceeeeeccCCcHHHH-HHHHHcCC-eEEE----cCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHH
Q 037610 64 LYNHMISNLPMIHPHYAVKCNPEPALL-EALAALGS-NFDC----GSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAA 137 (405)
Q Consensus 64 n~~~~~~~~~~~~i~yavKaN~~~~vl-~~l~~~G~-g~~v----aS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~ 137 (405)
.++++++..|+..+.+........... ......|+ ++.+ .+..-++.+++.|.. -..++ ..+.++++.++
T Consensus 103 ~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~g~~--v~~wt--vn~~~~~~~~~ 178 (189)
T cd08556 103 ALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYKLLTPELVRAAHAAGLK--VYVWT--VNDPEDARRLL 178 (189)
T ss_pred HHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccChhhCCHHHHHHHHHcCCE--EEEEc--CCCHHHHHHHH
Confidence 445556666666666655543322221 12233333 2211 234444555555542 12332 23455666666
Q ss_pred HcCCc
Q 037610 138 SVGVN 142 (405)
Q Consensus 138 ~~gv~ 142 (405)
+.|+.
T Consensus 179 ~~GVd 183 (189)
T cd08556 179 ALGVD 183 (189)
T ss_pred HCCCC
Confidence 66654
No 316
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=24.40 E-value=5.3e+02 Score=23.24 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=8.5
Q ss_pred CCCCCHHHHHHHHHcCCc
Q 037610 125 NPCKPVSHIKYAASVGVN 142 (405)
Q Consensus 125 gp~k~~~~l~~a~~~gv~ 142 (405)
|...+.++++.|++.|..
T Consensus 68 GTV~~~~~~~~a~~aGA~ 85 (206)
T PRK09140 68 GTVLSPEQVDRLADAGGR 85 (206)
T ss_pred EecCCHHHHHHHHHcCCC
Confidence 344444444444444444
No 317
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=24.35 E-value=6.2e+02 Score=24.09 Aligned_cols=112 Identities=12% Similarity=0.120 Sum_probs=65.6
Q ss_pred HHhCCCCceeeeeccCCc-HHHHHHHHHcCCe-E------EE--------------cCHHHHHHHHhCCCCCCcEEEcCC
Q 037610 69 ISNLPMIHPHYAVKCNPE-PALLEALAALGSN-F------DC--------------GSRSEIEAVLLLDVSPDRIIYANP 126 (405)
Q Consensus 69 ~~~~~~~~i~yavKaN~~-~~vl~~l~~~G~g-~------~v--------------aS~~E~~~a~~~G~~~~~Ii~~gp 126 (405)
++..|++++.---|+-|. ..+.+.....|-| - |. .+..++....+.-.+..+|..=
T Consensus 117 ~~~~~~~~I~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVE-- 194 (277)
T TIGR01334 117 KKISPMAVVACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVE-- 194 (277)
T ss_pred HhcCCCCEEEecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEE--
Confidence 333467889889999884 4555555565531 1 22 1455544444433333445553
Q ss_pred CCCHHHHHHHHHcCCcEEEecCH--HHHHHHHhHCC--CCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHH
Q 037610 127 CKPVSHIKYAASVGVNLTTVDSV--EELDKIRNWHP--KSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLK 198 (405)
Q Consensus 127 ~k~~~~l~~a~~~gv~~i~vds~--~el~~i~~~~~--~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~ 198 (405)
..+.++.+++++.|+..+.+|++ +++....+.-+ +.++.+-+. | |+ +.+.+.+..+
T Consensus 195 v~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l~~~~~~~~leas-----G---------GI--~~~ni~~ya~ 254 (277)
T TIGR01334 195 ADTIEQALTVLQASPDILQLDKFTPQQLHHLHERLKFFDHIPTLAAA-----G---------GI--NPENIADYIE 254 (277)
T ss_pred CCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHhccCCCEEEEEE-----C---------CC--CHHHHHHHHh
Confidence 24789999999999988888864 55555444322 233444333 1 78 7777665543
No 318
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=24.35 E-value=40 Score=14.67 Aligned_cols=6 Identities=50% Similarity=1.326 Sum_probs=4.4
Q ss_pred CCCCCC
Q 037610 2 ASCPKG 7 (405)
Q Consensus 2 ~~~~~~ 7 (405)
..||.|
T Consensus 4 ~nCP~G 9 (9)
T PF00220_consen 4 RNCPIG 9 (9)
T ss_pred ccCCCC
Confidence 479876
No 319
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=23.82 E-value=8.2e+02 Score=25.27 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=19.2
Q ss_pred ChhhHHHHHHHHHHc-CCeEEEEEEecCCC
Q 037610 189 HPQEIMPLLKAAEAS-GLSVVGVSFHVGSE 217 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~l~l~Gih~H~gs~ 217 (405)
.++++.++++.+++. ++. .|+|+|--.+
T Consensus 190 ~P~~v~~Lv~alk~~~~~p-i~~H~Hnt~G 218 (468)
T PRK12581 190 TPKAAKELVSGIKAMTNLP-LIVHTHATSG 218 (468)
T ss_pred CHHHHHHHHHHHHhccCCe-EEEEeCCCCc
Confidence 778888888877663 443 5778886554
No 320
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=23.82 E-value=6.9e+02 Score=24.41 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=7.0
Q ss_pred ChhhHHHHHHHHHH
Q 037610 189 HPQEIMPLLKAAEA 202 (405)
Q Consensus 189 ~~~e~~~~~~~~~~ 202 (405)
+.+++.+.++.+.+
T Consensus 163 t~~~~~~~l~~~~~ 176 (350)
T PRK08446 163 NKKLLKEELKLAKE 176 (350)
T ss_pred CHHHHHHHHHHHHh
Confidence 44555555555444
No 321
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=23.81 E-value=1.4e+02 Score=27.47 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=47.7
Q ss_pred CCceeeeeccCCc----HHHHH--HHHHc--CC---eEEEcC-------HHHHHHHHhCCCCCCcEEEcCCCCCHHHHHH
Q 037610 74 MIHPHYAVKCNPE----PALLE--ALAAL--GS---NFDCGS-------RSEIEAVLLLDVSPDRIIYANPCKPVSHIKY 135 (405)
Q Consensus 74 ~~~i~yavKaN~~----~~vl~--~l~~~--G~---g~~vaS-------~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~ 135 (405)
+..+.+.-+|++. +.++. .++++ |. ++|-+| .+-++.+++. ...-.|.+.|..++.++++.
T Consensus 118 ~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~-~~~~pl~vGGGIrs~e~a~~ 196 (223)
T TIGR01768 118 GGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAEVKKV-LDKARLFVGGGIRSVEKARE 196 (223)
T ss_pred CcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHHHHHH-cCCCCEEEecCCCCHHHHHH
Confidence 4566666777663 23222 22222 32 556553 3335555554 21245889999999999999
Q ss_pred HHHcCCcEEEecCHH
Q 037610 136 AASVGVNLTTVDSVE 150 (405)
Q Consensus 136 a~~~gv~~i~vds~~ 150 (405)
+++.|+..+++.|.-
T Consensus 197 l~~aGAD~VVVGs~~ 211 (223)
T TIGR01768 197 MAEAGADTIVTGNVI 211 (223)
T ss_pred HHHcCCCEEEECcHH
Confidence 999998888888843
No 322
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=23.72 E-value=7.2e+02 Score=24.57 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCcEEEecCHHHHHHHHh-HCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEE
Q 037610 130 VSHIKYAASVGVNLTTVDSVEELDKIRN-WHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVV 208 (405)
Q Consensus 130 ~~~l~~a~~~gv~~i~vds~~el~~i~~-~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~ 208 (405)
..-++.+++.|+.. .+-+.-.++.... ...+..+.||+|...... .-+...+- -...+++++ ..+-.-+
T Consensus 94 ~~~i~~a~~~g~dA-v~~~~G~l~~~~~~~~~~iplIlkln~~t~l~-~~~~~~~~----l~~sVedAl----rLGAdAV 163 (348)
T PRK09250 94 ENIVKLAIEAGCNA-VASTLGVLEAVARKYAHKIPFILKLNHNELLS-YPNTYDQA----LTASVEDAL----RLGAVAV 163 (348)
T ss_pred HHHHHHHHhcCCCE-EEeCHHHHHhccccccCCCCEEEEeCCCCCCC-CCCCCccc----ceecHHHHH----HCCCCEE
Confidence 44677778888874 4556777777443 345678999998432110 00000110 001122333 3466778
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 037610 209 GVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSN 243 (405)
Q Consensus 209 Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~ 243 (405)
|+|..+||.. -.++++.+.++.+.+.+.|+
T Consensus 164 ~~tvy~Gs~~-----E~~ml~~l~~i~~ea~~~Gl 193 (348)
T PRK09250 164 GATIYFGSEE-----SRRQIEEISEAFEEAHELGL 193 (348)
T ss_pred EEEEecCCHH-----HHHHHHHHHHHHHHHHHhCC
Confidence 8889899742 13577888888888888887
No 323
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=23.69 E-value=2.5e+02 Score=27.27 Aligned_cols=73 Identities=22% Similarity=0.155 Sum_probs=37.9
Q ss_pred CCceeeeeccCCcHH-------HHHHHHHcCCeEEE-cC----H-HH---HHHHHhCCCCCCcEEEcCCCCC--HHHHHH
Q 037610 74 MIHPHYAVKCNPEPA-------LLEALAALGSNFDC-GS----R-SE---IEAVLLLDVSPDRIIYANPCKP--VSHIKY 135 (405)
Q Consensus 74 ~~~i~yavKaN~~~~-------vl~~l~~~G~g~~v-aS----~-~E---~~~a~~~G~~~~~Ii~~gp~k~--~~~l~~ 135 (405)
+-++.+.+|...++. +-+.+.+.|+-+.+ .. . .+ ++.++..|++. |++.+..-+ ...++.
T Consensus 23 ~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdg--Iiv~~~d~~al~~~l~~ 100 (336)
T PRK15408 23 AERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNA--IIVSAVSPDGLCPALKR 100 (336)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCE--EEEecCCHHHHHHHHHH
Confidence 457888899766443 33344445654444 11 1 11 23344556543 555433212 356666
Q ss_pred HHHcCCcEEEecC
Q 037610 136 AASVGVNLTTVDS 148 (405)
Q Consensus 136 a~~~gv~~i~vds 148 (405)
|.+.|+.++++|+
T Consensus 101 a~~~gIpVV~~d~ 113 (336)
T PRK15408 101 AMQRGVKVLTWDS 113 (336)
T ss_pred HHHCCCeEEEeCC
Confidence 6677776666665
No 324
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=23.61 E-value=2.8e+02 Score=25.50 Aligned_cols=30 Identities=33% Similarity=0.432 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHc-----CCeEEEEEEecCCCCCC
Q 037610 190 PQEIMPLLKAAEAS-----GLSVVGVSFHVGSEATN 220 (405)
Q Consensus 190 ~~e~~~~~~~~~~~-----~l~l~Gih~H~gs~~~~ 220 (405)
.+++.++++.++.. +-. +|+|.|++-...+
T Consensus 91 ~~~i~~~~~~lr~~~~~~~~~s-cg~HVHv~~~~~~ 125 (252)
T PF12224_consen 91 LEEIDKVLEALRRNGAIGTNDS-CGFHVHVGPEPPS 125 (252)
T ss_pred HHHHHHHHHHHHHcCCccccCC-eeEEEEECCCCCC
Confidence 34566666666552 233 9999999876444
No 325
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=23.51 E-value=2.7e+02 Score=25.16 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=36.2
Q ss_pred cHHHHHHHHHcCCeEEEcCHH--H-HH-HHHhCCCCCC-cEEEcC----CCCC-HHHHHHHH-HcCCc----EEEecCHH
Q 037610 86 EPALLEALAALGSNFDCGSRS--E-IE-AVLLLDVSPD-RIIYAN----PCKP-VSHIKYAA-SVGVN----LTTVDSVE 150 (405)
Q Consensus 86 ~~~vl~~l~~~G~g~~vaS~~--E-~~-~a~~~G~~~~-~Ii~~g----p~k~-~~~l~~a~-~~gv~----~i~vds~~ 150 (405)
..++++.|.+.|....++|-. + +. .+...|+... .+++.+ ..|+ ++-+..++ +.|+. ++.=|+..
T Consensus 100 ~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~IGDs~~ 179 (229)
T PRK13226 100 VEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYVGDDER 179 (229)
T ss_pred HHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEeCCCHH
Confidence 567888888888755555432 2 22 2333565331 233332 2333 44455554 34542 34446666
Q ss_pred HHHHHHhH
Q 037610 151 ELDKIRNW 158 (405)
Q Consensus 151 el~~i~~~ 158 (405)
.++.-.+.
T Consensus 180 Di~aA~~a 187 (229)
T PRK13226 180 DILAARAA 187 (229)
T ss_pred HHHHHHHC
Confidence 65555443
No 326
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.51 E-value=5e+02 Score=22.64 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=63.4
Q ss_pred CcHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHH
Q 037610 32 DELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAV 111 (405)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a 111 (405)
..+.+=++..+. ++|. ||++-.....++-++.|++ .+..++..+=--....+...+.+.+
T Consensus 43 e~v~esv~dVv~---rwGG-~F~v~~~~nw~~~i~~wk~--gG~vvHLTMYG~~i~dv~~ei~~~~-------------- 102 (179)
T COG1303 43 EKVVESVEDVVE---RWGG-PFFVKFGVNWRKVIREWKE--GGIVVHLTMYGLNIDDVIDEIRESK-------------- 102 (179)
T ss_pred HHHHHHHHHHHH---hcCC-CEEEEEcccHHHHHHHhhc--CCEEEEEEecCCcchhhhHHHHhcC--------------
Confidence 445555566554 5888 9988888888888888887 5666655554444445555554432
Q ss_pred HhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHH
Q 037610 112 LLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIR 156 (405)
Q Consensus 112 ~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~ 156 (405)
.+.++.-|..|-+.+.-++.++++. +.=--.+|...|+
T Consensus 103 ------k~~lvvVGaeKVp~evYelADyNV~-VgnQPHSEVaaLA 140 (179)
T COG1303 103 ------KDVLVVVGAEKVPGEVYELADYNVS-VGNQPHSEVAALA 140 (179)
T ss_pred ------CcEEEEEccccCCHHHhhhccccee-cCCCccHHHHHHH
Confidence 1246667778888888888888874 4444456665443
No 327
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=23.35 E-value=8e+02 Score=24.97 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=29.3
Q ss_pred ChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHH
Q 037610 189 HPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAK 232 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~ 232 (405)
+.+++.+.++.+++.++.-+++.+-+|-...+.+.+.+.++.+.
T Consensus 185 ~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~ 228 (453)
T PRK09249 185 PFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVL 228 (453)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHH
Confidence 67788888888887777445666666755556666665555443
No 328
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=23.32 E-value=1.6e+02 Score=27.85 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=29.8
Q ss_pred HHHHHhCCCCCCc-EEEcCCCCCHHHHHHHHHcCCcEEEecCHH--HHHHHHh
Q 037610 108 IEAVLLLDVSPDR-IIYANPCKPVSHIKYAASVGVNLTTVDSVE--ELDKIRN 157 (405)
Q Consensus 108 ~~~a~~~G~~~~~-Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~--el~~i~~ 157 (405)
+..+++. ++++. |-+. +.+.+++.+|++.|+.++.+|++. +++++.+
T Consensus 172 v~~~r~~-~~~~~~Igve--v~s~eea~~A~~~gaDyI~ld~~~~e~l~~~~~ 221 (268)
T cd01572 172 VRRARAA-APFTLKIEVE--VETLEQLKEALEAGADIIMLDNMSPEELREAVA 221 (268)
T ss_pred HHHHHHh-CCCCCeEEEE--ECCHHHHHHHHHcCCCEEEECCcCHHHHHHHHH
Confidence 4455554 33333 3333 357899999999999988888764 4444443
No 329
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=23.25 E-value=1.6e+02 Score=25.96 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=25.4
Q ss_pred HHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHH
Q 037610 111 VLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDK 154 (405)
Q Consensus 111 a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~ 154 (405)
+.+.|++|++++|-|- +...++.|.+.|+..+.+.+...+..
T Consensus 151 ~~~~~~~p~~~l~vgD--~~~di~aA~~aG~~~i~~~~~~~~~~ 192 (199)
T PRK09456 151 LQAEGFSAADAVFFDD--NADNIEAANALGITSILVTDKQTIPD 192 (199)
T ss_pred HHHcCCChhHeEEeCC--CHHHHHHHHHcCCEEEEecCCccHHH
Confidence 4445676666766665 34567777777766556665555443
No 330
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=23.25 E-value=6.3e+02 Score=23.72 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=36.4
Q ss_pred cHHHHHHHHHc-CC--eEEEcCHHHHHHHHhC--CCCCCcEEEcCCC---CCHHHHHHHHHcCCcEE
Q 037610 86 EPALLEALAAL-GS--NFDCGSRSEIEAVLLL--DVSPDRIIYANPC---KPVSHIKYAASVGVNLT 144 (405)
Q Consensus 86 ~~~vl~~l~~~-G~--g~~vaS~~E~~~a~~~--G~~~~~Ii~~gp~---k~~~~l~~a~~~gv~~i 144 (405)
...+++.+.+. ++ .+|..+++-++.++++ |. .|+-.=.. +.++-++.+.++|+.++
T Consensus 57 ~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~---~iINsIs~~~~~~~~~~~l~~~~g~~vv 120 (261)
T PRK07535 57 MEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGP---PLINSVSAEGEKLEVVLPLVKKYNAPVV 120 (261)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCC---CEEEeCCCCCccCHHHHHHHHHhCCCEE
Confidence 34566666553 53 8999999999999998 63 35543222 23455666778887644
No 331
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.20 E-value=6.1e+02 Score=23.67 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=25.7
Q ss_pred CCCCceeeecccccCCceEEEeecCCcHHHHHHHHHhhcCC-CCCccEEE
Q 037610 7 GTPSTLLHLDAQVMGGQRVTTVVTKDELTEFMQSTILKRQE-FDEVPFYL 55 (405)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~P~~v 55 (405)
|.|..--.+|-|+..--....|..|.++.++++.+..=.+. .+. |+..
T Consensus 44 GiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~-plv~ 92 (256)
T TIGR00262 44 GVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI-PIGL 92 (256)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CEEE
Confidence 34444445555555555555667787777776654221112 356 7533
No 332
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=23.16 E-value=6.3e+02 Score=23.70 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=46.3
Q ss_pred CCceeeeeccCCcHHHHHHHHHcCCeEE-EcC-------HHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEE
Q 037610 74 MIHPHYAVKCNPEPALLEALAALGSNFD-CGS-------RSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTT 145 (405)
Q Consensus 74 ~~~i~yavKaN~~~~vl~~l~~~G~g~~-vaS-------~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~ 145 (405)
+.++.|.++..+. .+.+.+.+.|..+. ... ..|+...++. ..++-++..+...+.+..+.....+..+++
T Consensus 31 g~~v~f~~~~~~~-~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~ 108 (279)
T TIGR03590 31 GAEVAFACKPLPG-DLIDLLLSAGFPVYELPDESSRYDDALELINLLEE-EKFDILIVDHYGLDADWEKLIKEFGRKILV 108 (279)
T ss_pred CCEEEEEeCCCCH-HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHhCCeEEE
Confidence 5678888887654 34566777776432 222 2244444443 466778888877666655555456766778
Q ss_pred ecCHH
Q 037610 146 VDSVE 150 (405)
Q Consensus 146 vds~~ 150 (405)
+|++.
T Consensus 109 iDD~~ 113 (279)
T TIGR03590 109 IDDLA 113 (279)
T ss_pred EecCC
Confidence 88865
No 333
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=23.13 E-value=57 Score=24.59 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=11.4
Q ss_pred CCCCCCCCEEEEcC
Q 037610 358 LPELEVNDWLVFSE 371 (405)
Q Consensus 358 lp~l~~GD~l~~~~ 371 (405)
+|++++||||.++.
T Consensus 33 v~~~~vGD~VLVH~ 46 (76)
T TIGR00074 33 VGEVKVGDYVLVHV 46 (76)
T ss_pred eCCCCCCCEEEEec
Confidence 47899999988764
No 334
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=23.11 E-value=5.1e+02 Score=24.26 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=44.6
Q ss_pred cHHHHHHHHHcCC--eEEEcCHHHHHHHHhCCCCCCcEEEcC----CCC-CHHHHHHHHHc---CCcEEE---ecCHHHH
Q 037610 86 EPALLEALAALGS--NFDCGSRSEIEAVLLLDVSPDRIIYAN----PCK-PVSHIKYAASV---GVNLTT---VDSVEEL 152 (405)
Q Consensus 86 ~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~g----p~k-~~~~l~~a~~~---gv~~i~---vds~~el 152 (405)
...+++...+.|. -+||.+.+|++.+.++|. +.|-+++ ... ..+....+.+. ++..+. +.+.+++
T Consensus 149 l~~li~~a~~lGl~~lvevh~~~E~~~A~~~ga--diIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~ 226 (260)
T PRK00278 149 LKELLDYAHSLGLDVLVEVHDEEELERALKLGA--PLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDL 226 (260)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCC--CEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHH
Confidence 5567777777886 578999999999999986 3344554 111 12333333332 222333 3467788
Q ss_pred HHHHhHC
Q 037610 153 DKIRNWH 159 (405)
Q Consensus 153 ~~i~~~~ 159 (405)
.++.+.+
T Consensus 227 ~~~~~~G 233 (260)
T PRK00278 227 KRLAKAG 233 (260)
T ss_pred HHHHHcC
Confidence 8777654
No 335
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=23.05 E-value=7e+02 Score=24.20 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhCC-CCceeeeeccCC------cHHHHHHHHHcCC-eEEE----cCHHHHHHHHhCCCCCCcEEEcC
Q 037610 58 LGVVVSLYNHMISNLP-MIHPHYAVKCNP------EPALLEALAALGS-NFDC----GSRSEIEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 58 ~~~l~~n~~~~~~~~~-~~~i~yavKaN~------~~~vl~~l~~~G~-g~~v----aS~~E~~~a~~~G~~~~~Ii~~g 125 (405)
.+...+.++++++.++ +.. ..+.+|. ...+++.+.+.++ .+|- ....++..+++. .+. .|....
T Consensus 172 ~~~d~~~v~~ir~~~g~~~~--l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~~-~~i-pi~~dE 247 (357)
T cd03316 172 LREDLARVRAVREAVGPDVD--LMVDANGRWDLAEAIRLARALEEYDLFWFEEPVPPDDLEGLARLRQA-TSV-PIAAGE 247 (357)
T ss_pred HHHHHHHHHHHHHhhCCCCE--EEEECCCCCCHHHHHHHHHHhCccCCCeEcCCCCccCHHHHHHHHHh-CCC-CEEecc
Confidence 3455667777777774 333 4567776 2355555555565 4542 224445555544 222 266666
Q ss_pred CCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCC
Q 037610 126 PCKPVSHIKYAASVG-VNLTTVD-----SVEELDKIRNWHPK 161 (405)
Q Consensus 126 p~k~~~~l~~a~~~g-v~~i~vd-----s~~el~~i~~~~~~ 161 (405)
...+.++++.+++.| +..+++| .+.+..++.+.+..
T Consensus 248 ~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~ 289 (357)
T cd03316 248 NLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEA 289 (357)
T ss_pred ccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHH
Confidence 666777777777654 3344433 45566666655443
No 336
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=22.93 E-value=5e+02 Score=23.21 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCC--eEEEcCHHHHHHHHhCCCCCCcEEEcCCCC-----CHHHHHHHHHc---CCcEE---EecCHHHHH
Q 037610 87 PALLEALAALGS--NFDCGSRSEIEAVLLLDVSPDRIIYANPCK-----PVSHIKYAASV---GVNLT---TVDSVEELD 153 (405)
Q Consensus 87 ~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k-----~~~~l~~a~~~---gv~~i---~vds~~el~ 153 (405)
..+++.....|. -++|.+..|++.+.+.|+ +.|.+++-.. ..+.+..+.+. ++.++ =+.+.+++.
T Consensus 111 ~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~--~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~ 188 (217)
T cd00331 111 KELYELARELGMEVLVEVHDEEELERALALGA--KIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVK 188 (217)
T ss_pred HHHHHHHHHcCCeEEEEECCHHHHHHHHHcCC--CEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHH
Confidence 444555556676 368899999999999886 4566663211 12334444332 33333 245677887
Q ss_pred HHHhHC
Q 037610 154 KIRNWH 159 (405)
Q Consensus 154 ~i~~~~ 159 (405)
++.+.+
T Consensus 189 ~~~~~G 194 (217)
T cd00331 189 RLAEAG 194 (217)
T ss_pred HHHHcC
Confidence 777653
No 337
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=22.87 E-value=52 Score=24.19 Aligned_cols=14 Identities=21% Similarity=0.743 Sum_probs=9.5
Q ss_pred CCCCCCCCEEEEcC
Q 037610 358 LPELEVNDWLVFSE 371 (405)
Q Consensus 358 lp~l~~GD~l~~~~ 371 (405)
+|++++||||.++.
T Consensus 35 v~~v~~Gd~VLVHa 48 (68)
T PF01455_consen 35 VPDVKVGDYVLVHA 48 (68)
T ss_dssp CTSB-TT-EEEEET
T ss_pred eCCCCCCCEEEEec
Confidence 57899999988754
No 338
>PRK07591 threonine synthase; Validated
Probab=22.86 E-value=3.1e+02 Score=27.71 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=62.0
Q ss_pred CccEEEEeHHHHHHHHH--HHHHhCCCCceeeeeccCCcHHHHHHHHHcCC-eEEEcCHHHH-----HHHHhCCCCCCcE
Q 037610 50 EVPFYLMDLGVVVSLYN--HMISNLPMIHPHYAVKCNPEPALLEALAALGS-NFDCGSRSEI-----EAVLLLDVSPDRI 121 (405)
Q Consensus 50 t~P~~v~d~~~l~~n~~--~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E~-----~~a~~~G~~~~~I 121 (405)
| |+ +..+.+.+.+- ++.-.+-+..+.-++|-......+..+.+.|. .+-++|-+=. ..+..+|++. +
T Consensus 90 T-PL--v~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~~~vv~aSsGN~g~alA~~aa~~Gl~~--~ 164 (421)
T PRK07591 90 T-PL--VKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGFTTVACASTGNLANSVAAHAARAGLDS--C 164 (421)
T ss_pred C-cc--eEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHcCCCE--E
Confidence 7 87 55666654431 12111224456678888876666777778887 7777776553 3455568865 5
Q ss_pred EEcCCCCCHHHHHHHHHcCCcEEEecC-HHHH
Q 037610 122 IYANPCKPVSHIKYAASVGVNLTTVDS-VEEL 152 (405)
Q Consensus 122 i~~gp~k~~~~l~~a~~~gv~~i~vds-~~el 152 (405)
+|....-+...+..+..+|..++.++. .++.
T Consensus 165 I~vP~~~~~~k~~~~~~~GA~Vi~v~g~~d~a 196 (421)
T PRK07591 165 VFIPADLEAGKIVGTLVYGPTLVAVDGNYDDV 196 (421)
T ss_pred EEEcCCCCHHHHHHHHHcCCEEEEECCCHHHH
Confidence 666555566788888899998777764 4444
No 339
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=22.85 E-value=1.3e+02 Score=29.45 Aligned_cols=72 Identities=22% Similarity=0.157 Sum_probs=44.8
Q ss_pred eccCCcHHHHHHHHHcCC---eEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHH----H-cCCcEEEecCHHHH
Q 037610 81 VKCNPEPALLEALAALGS---NFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAA----S-VGVNLTTVDSVEEL 152 (405)
Q Consensus 81 vKaN~~~~vl~~l~~~G~---g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~----~-~gv~~i~vds~~el 152 (405)
=|+.-...++....+.|- .+|.-..-+-..+.+.|++.+++++.-|. +.+++...+ + .++.+++|||+.-+
T Consensus 67 GKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~-~~eq~l~i~~~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 67 GKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPD-TGEQALEIADSLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCC-CHHHHHHHHHHHHhccCCCEEEEcchHhh
Confidence 455445555555555552 45554444456788899999999988775 444444333 2 35667899997765
Q ss_pred H
Q 037610 153 D 153 (405)
Q Consensus 153 ~ 153 (405)
.
T Consensus 146 ~ 146 (325)
T cd00983 146 V 146 (325)
T ss_pred c
Confidence 4
No 340
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=22.74 E-value=1.7e+02 Score=25.89 Aligned_cols=41 Identities=24% Similarity=0.352 Sum_probs=27.9
Q ss_pred HHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHH
Q 037610 111 VLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELD 153 (405)
Q Consensus 111 a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~ 153 (405)
+.+.|++|++++|-|- +..++..|.+.|+..+.+.+.+++.
T Consensus 162 ~~~~g~~~~~~l~i~D--~~~di~aA~~aG~~~i~v~~~~~~~ 202 (211)
T TIGR02247 162 LERLGVAPEECVFLDD--LGSNLKPAAALGITTIKVSDEEQAI 202 (211)
T ss_pred HHHcCCCHHHeEEEcC--CHHHHHHHHHcCCEEEEECCHHHHH
Confidence 3456777777777664 4677888888887766776665553
No 341
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=22.72 E-value=4.6e+02 Score=25.42 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=53.4
Q ss_pred EEEEeHHHHHHHHHHHHHhCCCCceeeeeccC--------CcHHHHHHHHHcCC-eEEEcCH------------HHHHHH
Q 037610 53 FYLMDLGVVVSLYNHMISNLPMIHPHYAVKCN--------PEPALLEALAALGS-NFDCGSR------------SEIEAV 111 (405)
Q Consensus 53 ~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN--------~~~~vl~~l~~~G~-g~~vaS~------------~E~~~a 111 (405)
.++-|.+.+.+-++++++... +. ..+|.. ...++++.+.+.|+ .+.|... +-+..+
T Consensus 113 ~ll~~p~~~~eiv~av~~a~d-~p--v~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~i 189 (321)
T PRK10415 113 ALLQYPDLVKSILTEVVNAVD-VP--VTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAV 189 (321)
T ss_pred HHhcCHHHHHHHHHHHHHhcC-Cc--eEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHH
Confidence 466778889998998887652 22 335541 13578888999997 6665432 111222
Q ss_pred HhCCCCCCcEEEcCCCCCHHHHHHHHH-cCCcEEEe
Q 037610 112 LLLDVSPDRIIYANPCKPVSHIKYAAS-VGVNLTTV 146 (405)
Q Consensus 112 ~~~G~~~~~Ii~~gp~k~~~~l~~a~~-~gv~~i~v 146 (405)
.+. ++- .|+.+|...+.++.+.+++ .|+..+.+
T Consensus 190 k~~-~~i-PVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 190 KQK-VSI-PVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred HHh-cCC-cEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 221 222 3777777777777777776 35543333
No 342
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=22.69 E-value=5.9e+02 Score=23.21 Aligned_cols=60 Identities=20% Similarity=0.148 Sum_probs=38.8
Q ss_pred cHHHHHHHHHcCC-eEEEcCHH----------H-HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHc-CCcEEEec
Q 037610 86 EPALLEALAALGS-NFDCGSRS----------E-IEAVLLLDVSPDRIIYANPCKPVSHIKYAASV-GVNLTTVD 147 (405)
Q Consensus 86 ~~~vl~~l~~~G~-g~~vaS~~----------E-~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~-gv~~i~vd 147 (405)
...+++.+.+.|+ .+.+.+.. | +..+.+. .+- .++.+|...+.+++..+++. |+..+.+.
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~-~~~-pvia~GGi~~~~di~~~l~~~g~dgv~vg 223 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSA-VNI-PVIASGGAGKPEHFVEAFEEGGADAALAA 223 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhh-CCC-CEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 4577888888998 67774443 2 3333332 222 47888888888888888876 77544443
No 343
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.61 E-value=1.5e+02 Score=28.42 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=49.2
Q ss_pred CCceeeeeccCC-cHHHHHHHHHcC------CeEE------------EcCHHHHHHHHhCCCCCCc-EEEcCCCCCHHHH
Q 037610 74 MIHPHYAVKCNP-EPALLEALAALG------SNFD------------CGSRSEIEAVLLLDVSPDR-IIYANPCKPVSHI 133 (405)
Q Consensus 74 ~~~i~yavKaN~-~~~vl~~l~~~G------~g~~------------vaS~~E~~~a~~~G~~~~~-Ii~~gp~k~~~~l 133 (405)
++++.-.=|+-| ...+.+.....| .|+. ..|..|.....+.-+++.. |-.. +-+.+|+
T Consensus 132 ~~~i~~TRKt~Pg~R~l~k~AV~~GGg~~HR~gL~d~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VE--v~tleea 209 (288)
T PRK07428 132 PTQLVDTRKTTPGLRLLEKYATQVGGAINHRMGLDDAVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVE--TETLEQV 209 (288)
T ss_pred CeEEEecCCCCCcchHHHHHHHHhcCcccccCCchheeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEE--CCCHHHH
Confidence 466666677777 334444444432 1211 3456666554444344333 4332 3578999
Q ss_pred HHHHHcCCcEEEecCH--HHHHHHHhH
Q 037610 134 KYAASVGVNLTTVDSV--EELDKIRNW 158 (405)
Q Consensus 134 ~~a~~~gv~~i~vds~--~el~~i~~~ 158 (405)
.+|++.|+.++-+|++ ++++++.+.
T Consensus 210 ~eA~~~GaD~I~LDn~~~e~l~~av~~ 236 (288)
T PRK07428 210 QEALEYGADIIMLDNMPVDLMQQAVQL 236 (288)
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 9999999998888865 566665543
No 344
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=22.47 E-value=6.2e+02 Score=23.40 Aligned_cols=51 Identities=8% Similarity=0.200 Sum_probs=37.4
Q ss_pred cEEEcCCCCCHHHHHHHHHcCCcEEEec-----CHHHHHHHHhHCCCCeEEEEEec
Q 037610 120 RIIYANPCKPVSHIKYAASVGVNLTTVD-----SVEELDKIRNWHPKSDLLIRIKS 170 (405)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gv~~i~vd-----s~~el~~i~~~~~~~~v~lRi~~ 170 (405)
.+.+.|...+.++++.+++.|+..+.+. +.+.++++.+.++..++.+-++.
T Consensus 76 pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~ 131 (254)
T TIGR00735 76 PLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDA 131 (254)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEe
Confidence 4888999999999999999987655554 45566777766655566666653
No 345
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=22.45 E-value=4.9e+02 Score=23.77 Aligned_cols=91 Identities=10% Similarity=0.146 Sum_probs=47.8
Q ss_pred cEEEcCCCCCHHHHHHHHHcCCcEEEecC-----HHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCC-CCCCChhhH
Q 037610 120 RIIYANPCKPVSHIKYAASVGVNLTTVDS-----VEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKY-GAGHHPQEI 193 (405)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gv~~i~vds-----~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srf-Gi~~~~~e~ 193 (405)
.+.+.|...+.++++.+++.|+..+++.| .+.++++.+.+...++.+-+..-.+......-+.+. ++ ++
T Consensus 75 ~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~-----~~ 149 (229)
T PF00977_consen 75 PIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGI-----DL 149 (229)
T ss_dssp EEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEE-----EH
T ss_pred cEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCc-----CH
Confidence 47888888888888888888887655554 455556665554445555554322100001112221 33 34
Q ss_pred HHHHHHHHHcCCeEEEEEEecCC
Q 037610 194 MPLLKAAEASGLSVVGVSFHVGS 216 (405)
Q Consensus 194 ~~~~~~~~~~~l~l~Gih~H~gs 216 (405)
.++++.+.+.+..=. |.+.+..
T Consensus 150 ~~~~~~~~~~g~~~i-i~tdi~~ 171 (229)
T PF00977_consen 150 EEFAKRLEELGAGEI-ILTDIDR 171 (229)
T ss_dssp HHHHHHHHHTT-SEE-EEEETTT
T ss_pred HHHHHHHHhcCCcEE-EEeeccc
Confidence 556666666654422 5555554
No 346
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=22.40 E-value=7.8e+02 Score=24.51 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=27.1
Q ss_pred EeHHHHHHHHHHHHHhCCCCceeeeeccCC--cHHHHHHHHHcCCe
Q 037610 56 MDLGVVVSLYNHMISNLPMIHPHYAVKCNP--EPALLEALAALGSN 99 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~~~~~~i~yavKaN~--~~~vl~~l~~~G~g 99 (405)
++.+.+.+.++++++.- +..+++.++ ..++++.+.+.|+.
T Consensus 116 ~~p~l~~~ii~~vr~a~----VtvkiRl~~~~~~e~a~~l~eAGad 157 (369)
T TIGR01304 116 LKPELLGERIAEVRDSG----VITAVRVSPQNAREIAPIVVKAGAD 157 (369)
T ss_pred cChHHHHHHHHHHHhcc----eEEEEecCCcCHHHHHHHHHHCCCC
Confidence 68888888888888752 333444443 46788888888873
No 347
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.20 E-value=98 Score=28.35 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=42.0
Q ss_pred HHHHHHcCCcE---E---EecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCe
Q 037610 133 IKYAASVGVNL---T---TVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLS 206 (405)
Q Consensus 133 l~~a~~~gv~~---i---~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~ 206 (405)
+..+.+.|... + =..+++|++.+.+.+.+..+ .+.|. | || +.+.++++++.+.+.++.
T Consensus 141 iaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~--~lEPT---G---------GI--dl~Nf~~I~~i~ldaGv~ 204 (236)
T TIGR03581 141 IAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF--YLEPT---G---------GI--DLDNFEEIVQIALDAGVE 204 (236)
T ss_pred HHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC--ccCCC---C---------Cc--cHHhHHHHHHHHHHcCCC
Confidence 34444666542 2 24677888888776544333 34331 1 78 899999999988777766
Q ss_pred EEEEEEecCCCC
Q 037610 207 VVGVSFHVGSEA 218 (405)
Q Consensus 207 l~Gih~H~gs~~ 218 (405)
.+ .=|+-|.+
T Consensus 205 kv--iPHIYssi 214 (236)
T TIGR03581 205 KV--IPHVYSSI 214 (236)
T ss_pred ee--ccccceec
Confidence 54 45655543
No 348
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=22.12 E-value=6.2e+02 Score=23.23 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=19.5
Q ss_pred CcHHHHHHHHHcCC-eEEEc-----CHHHHHHHH-hCCCC
Q 037610 85 PEPALLEALAALGS-NFDCG-----SRSEIEAVL-LLDVS 117 (405)
Q Consensus 85 ~~~~vl~~l~~~G~-g~~va-----S~~E~~~a~-~~G~~ 117 (405)
+....++.+++.|. ++|.. .+.|+..++ +.|+.
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~ 55 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLE 55 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCc
Confidence 45667777777776 66653 345555444 45553
No 349
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=22.02 E-value=2e+02 Score=27.46 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=38.4
Q ss_pred cHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCc
Q 037610 86 EPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVN 142 (405)
Q Consensus 86 ~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~ 142 (405)
|+.+++.|.+.|+-.-+-+++|+. +...+++...+-+++..+.|.+.|+.
T Consensus 41 N~~Vv~~L~~~Gv~~~v~~~~~v~-------~~~~ViirAHGv~~~~~~~~~~~gl~ 90 (280)
T TIGR00216 41 NPQVVERLRERGVFFFLEDLDEVA-------AGDTVIIRAHGVPPEVREELEKKGLE 90 (280)
T ss_pred CHHHHHHHHHCCCEEeecCcccCC-------CCCEEEEeCCCCCHHHHHHHHHCCCe
Confidence 789999999999733345555533 23468888888899999999999985
No 350
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=21.87 E-value=83 Score=31.21 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=53.4
Q ss_pred eEEEcCHHHHHHHHhCCCCCCcEE--EcCCCCCHHHHHHHHHcCCcEEEecC-HHHHHHHHhHCCCCeEEEEEecCCCCC
Q 037610 99 NFDCGSRSEIEAVLLLDVSPDRII--YANPCKPVSHIKYAASVGVNLTTVDS-VEELDKIRNWHPKSDLLIRIKSPDDSG 175 (405)
Q Consensus 99 g~~vaS~~E~~~a~~~G~~~~~Ii--~~gp~k~~~~l~~a~~~gv~~i~vds-~~el~~i~~~~~~~~v~lRi~~~~~~~ 175 (405)
-+|+.+.+++..+++.. .++ ..||.....-++.|++.|+.++.... .+++..+.+.+++..+.+=+..+.+.
T Consensus 52 ~~d~~~~~~l~~~~~~~----dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~P- 126 (386)
T PF03435_consen 52 QVDVNDPESLAELLRGC----DVVINCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDP- 126 (386)
T ss_dssp E--TTTHHHHHHHHTTS----SEEEE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTT-
T ss_pred EEecCCHHHHHHHHhcC----CEEEECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCccccc-
Confidence 56777777777666543 344 34666567778888999997655433 45556666554433333323222211
Q ss_pred CCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCC
Q 037610 176 AKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSE 217 (405)
Q Consensus 176 ~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~ 217 (405)
|+ +.==+..+++.+....-++..+++|.|..
T Consensus 127 ---------Gl--~~~~a~~~~~~~~~~~~~v~~~~~~~g~~ 157 (386)
T PF03435_consen 127 ---------GL--SNLLARYAADELDAEGDEVESVDIYVGGL 157 (386)
T ss_dssp ---------BH--HHHHHHHHHHHHHHTTHEEEEEEEEEEEE
T ss_pred ---------ch--HHHHHHHHHHHhhhhcccceEEEEEEccc
Confidence 33 21112234444443334688888888765
No 351
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.82 E-value=6.9e+02 Score=23.89 Aligned_cols=65 Identities=8% Similarity=0.038 Sum_probs=40.8
Q ss_pred HHHHHHHcCC-eEEEcC-------------HHHHHHHHhCCCCCCcEEE-cCCCCCHHHHHHHHHcCCcEEEecCHHHHH
Q 037610 89 LLEALAALGS-NFDCGS-------------RSEIEAVLLLDVSPDRIIY-ANPCKPVSHIKYAASVGVNLTTVDSVEELD 153 (405)
Q Consensus 89 vl~~l~~~G~-g~~vaS-------------~~E~~~a~~~G~~~~~Ii~-~gp~k~~~~l~~a~~~gv~~i~vds~~el~ 153 (405)
..+.+.+.|+ .+.|+- .+-++.+.+. ++-+ +++ .|.+.+.++++.|+++|+.-+||++.-...
T Consensus 158 a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~-~~vP-LVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a 235 (283)
T PRK07998 158 VKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEV-SPVP-LVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKA 235 (283)
T ss_pred HHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhh-CCCC-EEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHH
Confidence 3555556787 455554 2333334333 4444 555 455677899999999999878998765444
Q ss_pred HH
Q 037610 154 KI 155 (405)
Q Consensus 154 ~i 155 (405)
..
T Consensus 236 ~~ 237 (283)
T PRK07998 236 FI 237 (283)
T ss_pred HH
Confidence 33
No 352
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=21.82 E-value=1.9e+02 Score=26.09 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=83.8
Q ss_pred CcHHHHHHHHHhhcCCCCCccEEEEe--HHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcCH---H
Q 037610 32 DELTEFMQSTILKRQEFDEVPFYLMD--LGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSR---S 106 (405)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~t~P~~v~d--~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~---~ 106 (405)
.+..++++.++.. |= ++..+- -..-.+.++++++.+|+..+- .=+=-+.+-++...+.|+.|-|+-. +
T Consensus 20 ~~a~~~~~al~~g----Gi-~~iEiT~~t~~a~~~I~~l~~~~p~~~vG--AGTV~~~e~a~~a~~aGA~FivSP~~~~~ 92 (196)
T PF01081_consen 20 EDAVPIAEALIEG----GI-RAIEITLRTPNALEAIEALRKEFPDLLVG--AGTVLTAEQAEAAIAAGAQFIVSPGFDPE 92 (196)
T ss_dssp GGHHHHHHHHHHT----T---EEEEETTSTTHHHHHHHHHHHHTTSEEE--EES--SHHHHHHHHHHT-SEEEESS--HH
T ss_pred HHHHHHHHHHHHC----CC-CEEEEecCCccHHHHHHHHHHHCCCCeeE--EEeccCHHHHHHHHHcCCCEEECCCCCHH
Confidence 5667777777654 23 444432 233456677777778864332 3333466788888999998887643 2
Q ss_pred HHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEe---cC---HHHHHHHHhHCCCCeEEEEEecCCCCCCCCCC
Q 037610 107 EIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTV---DS---VEELDKIRNWHPKSDLLIRIKSPDDSGAKYPL 180 (405)
Q Consensus 107 E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~v---ds---~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~ 180 (405)
=++.+++.|+ .++-| +.|+.|+..|.++|...+=+ +. ...++.|..-.|+. ++-+. |
T Consensus 93 v~~~~~~~~i----~~iPG-~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~p~~----~~~pt---G----- 155 (196)
T PF01081_consen 93 VIEYAREYGI----PYIPG-VMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALRGPFPDL----PFMPT---G----- 155 (196)
T ss_dssp HHHHHHHHTS----EEEEE-ESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTTTT-----EEEEB---S-----
T ss_pred HHHHHHHcCC----cccCC-cCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHhccCCCC----eEEEc---C-----
Confidence 2445666654 34444 56899999999999774433 33 45556665545543 33321 1
Q ss_pred CCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEec
Q 037610 181 DSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHV 214 (405)
Q Consensus 181 ~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~ 214 (405)
|+ +.+++.+.++ .+....|+-+-+
T Consensus 156 ----GV--~~~N~~~~l~----ag~~~vg~Gs~L 179 (196)
T PF01081_consen 156 ----GV--NPDNLAEYLK----AGAVAVGGGSWL 179 (196)
T ss_dssp ----S----TTTHHHHHT----STTBSEEEESGG
T ss_pred ----CC--CHHHHHHHHh----CCCEEEEECchh
Confidence 78 7777777764 344455654433
No 353
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=21.52 E-value=9.5e+02 Score=25.17 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=21.0
Q ss_pred ChhhHHHHHHHHHHc-CCeEEEEEEecCCC
Q 037610 189 HPQEIMPLLKAAEAS-GLSVVGVSFHVGSE 217 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~-~l~l~Gih~H~gs~ 217 (405)
.|+++.++++.+++. .....|+|+|--.+
T Consensus 181 ~P~~v~~li~~l~~~~~~~~i~vH~HND~G 210 (526)
T TIGR00977 181 LPHEISEITTKVKRSLKQPQLGIHAHNDSG 210 (526)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 788899999887653 44457899985443
No 354
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=21.49 E-value=3.4e+02 Score=25.47 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=24.3
Q ss_pred HHHHhCCCCCCcEEEcCCC--CCHHHHHHHHHcCCcEEEec
Q 037610 109 EAVLLLDVSPDRIIYANPC--KPVSHIKYAASVGVNLTTVD 147 (405)
Q Consensus 109 ~~a~~~G~~~~~Ii~~gp~--k~~~~l~~a~~~gv~~i~vd 147 (405)
+.+++.|+++.++++.... .+.+.++.+++.|+ .+.++
T Consensus 168 ~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~-~i~~~ 207 (293)
T cd00530 168 RILEEEGVDPSKVVIGHLDRNDDPDYLLKIAALGA-YLEFD 207 (293)
T ss_pred HHHHHcCCChhheEEeCCCCCCCHHHHHHHHhCCC-EEEeC
Confidence 3445668777665554443 35678888888887 45655
No 355
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=21.45 E-value=5.6e+02 Score=23.05 Aligned_cols=83 Identities=4% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCC-eEEEcCHHHH--------HHHHhCCCCCC-cEEEcCCCCCHHHHHHHHHcCCcEEEecC-----HHH
Q 037610 87 PALLEALAALGS-NFDCGSRSEI--------EAVLLLDVSPD-RIIYANPCKPVSHIKYAASVGVNLTTVDS-----VEE 151 (405)
Q Consensus 87 ~~vl~~l~~~G~-g~~vaS~~E~--------~~a~~~G~~~~-~Ii~~gp~k~~~~l~~a~~~gv~~i~vds-----~~e 151 (405)
.++++.+.+.|+ .+-+.+.+-. +.+.+.--..+ .+.+.|...+.++++.+++.|+..+.+.+ .+.
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~ 110 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDL 110 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHH
Q ss_pred HHHHHhHCCCCeEEEEEe
Q 037610 152 LDKIRNWHPKSDLLIRIK 169 (405)
Q Consensus 152 l~~i~~~~~~~~v~lRi~ 169 (405)
+..+.+.....++.+-++
T Consensus 111 ~~~~~~~~g~~~i~~sid 128 (230)
T TIGR00007 111 VKELLKEYGPERIVVSLD 128 (230)
T ss_pred HHHHHHHhCCCcEEEEEE
No 356
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=21.37 E-value=8.2e+02 Score=24.36 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=62.9
Q ss_pred CCccEEE-----EeHHHHHHHHHHHHHhC----C-CCce-eeeeccCC-----cHHHHHHHHHcCCe--EEEcCHHHHHH
Q 037610 49 DEVPFYL-----MDLGVVVSLYNHMISNL----P-MIHP-HYAVKCNP-----EPALLEALAALGSN--FDCGSRSEIEA 110 (405)
Q Consensus 49 ~t~P~~v-----~d~~~l~~n~~~~~~~~----~-~~~i-~yavKaN~-----~~~vl~~l~~~G~g--~~vaS~~E~~~ 110 (405)
.| |+++ +|++.|.++.+++.+.- + ..++ ..|+.+-+ ..+.++..++.|.- +..-.++=++.
T Consensus 96 pt-~~fvdv~D~m~e~el~~r~~~I~~f~~ervGe~L~LDgvair~~Sgdpekfa~ave~v~~~~~pv~l~s~dpevmka 174 (467)
T COG1456 96 PT-PMFVDVADDMDEEELVERANEIANFRKERVGEKLKLDGVAIRNRSGDPEKFAEAVEKVAEAGLPVILCSFDPEVMKA 174 (467)
T ss_pred CC-ceEEECcccCCHHHHHHHHHHHHHHHHhhhcceeeeeeEEEEecCCCHHHHHHHHHHHHhcCCcEEEEeCCHHHHHH
Confidence 47 8877 68889999888876431 1 1111 23444433 34677788888873 33344455566
Q ss_pred HHhCCCCCCcEEEcCCCCC-HHHHHHHHHcCCcEEEecCHHHHHHHH
Q 037610 111 VLLLDVSPDRIIYANPCKP-VSHIKYAASVGVNLTTVDSVEELDKIR 156 (405)
Q Consensus 111 a~~~G~~~~~Ii~~gp~k~-~~~l~~a~~~gv~~i~vds~~el~~i~ 156 (405)
+++.--+-..++|...--+ .+.++.|+++++. +++.+...++.+.
T Consensus 175 aLev~~dqkPllYaAte~n~~e~~klav~y~vp-lvl~a~~dl~~lk 220 (467)
T COG1456 175 ALEVVKDQKPLLYAATEDNWKEFAKLAVEYKVP-LVLSAFNDLDDLK 220 (467)
T ss_pred HHHHhhccCceeeecccccHHHHHHHHhhcCCc-EEEeccCCHHHHH
Confidence 6766333345888754323 4566777899986 5665554444443
No 357
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=21.31 E-value=4.6e+02 Score=24.72 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHH-HHhCCC
Q 037610 59 GVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEA-VLLLDV 116 (405)
Q Consensus 59 ~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~-a~~~G~ 116 (405)
..+..-.++++++||+..++.|. .+..|.+.|.+.+ |..+-|+.|+.. +...|+
T Consensus 18 ~ti~~ie~~~~~~fp~~~V~~Af---TS~~I~~kl~~~~-g~~i~~~~eaL~~L~~~G~ 72 (262)
T PF06180_consen 18 KTIDAIEKAVREAFPDYDVRRAF---TSRIIRKKLAERD-GIKIDSPEEALAKLADEGY 72 (262)
T ss_dssp HHHHHHHHHHHHCSTTSEEEEEE---S-HHHHHHHHHCH-T-----HHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHCCCCcEEEEc---hHHHHHHHHHhcC-CCCcCCHHHHHHHHHHCCC
Confidence 35555566677778877665554 3344666666553 456677766544 444566
No 358
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=21.29 E-value=1.2e+02 Score=25.39 Aligned_cols=26 Identities=19% Similarity=0.537 Sum_probs=12.9
Q ss_pred CCCCCcEEEcCCCCCHHHHHHHHHcCCc
Q 037610 115 DVSPDRIIYANPCKPVSHIKYAASVGVN 142 (405)
Q Consensus 115 G~~~~~Ii~~gp~k~~~~l~~a~~~gv~ 142 (405)
|++|+++++-|.. ..+++.|.+.|+.
T Consensus 147 ~~~p~~~~~vgD~--~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 147 GIPPEEILFVGDS--PSDVEAAKEAGIK 172 (176)
T ss_dssp TSSGGGEEEEESS--HHHHHHHHHTTSE
T ss_pred CCCcceEEEEeCC--HHHHHHHHHcCCe
Confidence 4555555555442 3555555555543
No 359
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=21.29 E-value=78 Score=24.75 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=24.7
Q ss_pred CCCCCCCEEEEcCCCccccccCCCCCCCCCCCceEEEEeCCcccccC
Q 037610 359 PELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSNQTLLAI 405 (405)
Q Consensus 359 p~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~~~~~~~s~~~~~~~ 405 (405)
+.+++||.|+|...++.... |++ .-|...+..+.||+
T Consensus 52 ~~Vk~GD~Vl~~~y~g~ev~----~~~------~~y~iv~e~DILa~ 88 (91)
T PRK14533 52 FDIKVGDKVIFSKYAGTEIK----IDD------EDYIIIDVNDILAK 88 (91)
T ss_pred ccccCCCEEEEccCCCeEEE----ECC------EEEEEEEhHhEEEE
Confidence 37999999999887665444 332 24666666676653
No 360
>PRK01722 formimidoylglutamase; Provisional
Probab=21.20 E-value=7.5e+02 Score=23.83 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=54.6
Q ss_pred CCCCcEEEcCCCC---CHHHHHHHHHcCCcEEEecCHHH--HH----HHHhHCC-CCeEEEEEecCCCCCCC----CCCC
Q 037610 116 VSPDRIIYANPCK---PVSHIKYAASVGVNLTTVDSVEE--LD----KIRNWHP-KSDLLIRIKSPDDSGAK----YPLD 181 (405)
Q Consensus 116 ~~~~~Ii~~gp~k---~~~~l~~a~~~gv~~i~vds~~e--l~----~i~~~~~-~~~v~lRi~~~~~~~~~----~~~~ 181 (405)
+.+.+++..|--- ++++.+.+.+.|+.+++.+.+.+ ++ .+.+..+ ...+.|-+..+.- ... ..+.
T Consensus 182 ~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~i~~~~~vyvS~DiDvl-Dps~aPgtgtp 260 (320)
T PRK01722 182 IRGFHYACIGVSRASNTQALWEEAKELGVTVVTDLDVRERGLKDILTELQEFIDQVDYIYLTIDLDVL-PAAEAPGVSAP 260 (320)
T ss_pred CCCCCEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCc-ChhhCCCCCCC
Confidence 4456777776532 46788888899986555444432 11 2222112 2345665555431 111 2223
Q ss_pred CCCCCCCChhhHHHHHHHHHHcCCeEEEEEEec
Q 037610 182 SKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHV 214 (405)
Q Consensus 182 srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~ 214 (405)
...|+ +..|+.++++.+.+. .+++|+.+--
T Consensus 261 ~pgGl--s~~e~~~il~~l~~~-~~vvg~DivE 290 (320)
T PRK01722 261 AAGGV--PLETLLRAIEPICRS-GKLQAADLVE 290 (320)
T ss_pred cCCCC--CHHHHHHHHHHHHhc-CCEEEEEEEE
Confidence 67799 999999999886443 3677776643
No 361
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=21.17 E-value=6.8e+02 Score=23.37 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhcCCCCCccEEE--EeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEE-cCH-----
Q 037610 34 LTEFMQSTILKRQEFDEVPFYL--MDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDC-GSR----- 105 (405)
Q Consensus 34 ~~~~~~~~~~~~~~~~t~P~~v--~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~v-aS~----- 105 (405)
+..+++.+.. ..+. |+-+ ++.+.+++-++. +..+.-++..-..+++++++.+.|+.+-+ .+.
T Consensus 63 l~~~v~~~~~---~~~~-plsiDT~~~~vi~~al~~------G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~ 132 (257)
T TIGR01496 63 VVPVIKALRD---QPDV-PISVDTYRAEVARAALEA------GADIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRT 132 (257)
T ss_pred HHHHHHHHHh---cCCC-eEEEeCCCHHHHHHHHHc------CCCEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcc
Confidence 4444454421 2356 7655 666666655543 45566666664467788888888874333 221
Q ss_pred ------------------HH-HHHHHhCCCCCCcEEEcC
Q 037610 106 ------------------SE-IEAVLLLDVSPDRIIYAN 125 (405)
Q Consensus 106 ------------------~E-~~~a~~~G~~~~~Ii~~g 125 (405)
.| ++.+.++|++.++|++-.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDP 171 (257)
T TIGR01496 133 MQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDP 171 (257)
T ss_pred cccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEEC
Confidence 11 455778899888888863
No 362
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.91 E-value=6.6e+02 Score=23.06 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=62.0
Q ss_pred CcHHHHHHHHHhhcCCCCCccEEEEeH--HHHHHHHH----HHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcCH
Q 037610 32 DELTEFMQSTILKRQEFDEVPFYLMDL--GVVVSLYN----HMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSR 105 (405)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~t~P~~v~d~--~~l~~n~~----~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~ 105 (405)
.+..++++.++.. |= ++..+-+ ..-.+.++ ++++.+|+..+ -.=+=-+++-++...+.|+.|-|+--
T Consensus 27 ~~a~~~~~al~~g----Gi-~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~v--GaGTVl~~e~a~~a~~aGA~FiVsP~ 99 (222)
T PRK07114 27 EVAKKVIKACYDG----GA-RVFEFTNRGDFAHEVFAELVKYAAKELPGMIL--GVGSIVDAATAALYIQLGANFIVTPL 99 (222)
T ss_pred HHHHHHHHHHHHC----CC-CEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEE--eeEeCcCHHHHHHHHHcCCCEEECCC
Confidence 3444555555533 33 4554433 22233334 44455564322 22333356777888888888877643
Q ss_pred ---HHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEe---c--CHHHHHHHHhHCC
Q 037610 106 ---SEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTV---D--SVEELDKIRNWHP 160 (405)
Q Consensus 106 ---~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~v---d--s~~el~~i~~~~~ 160 (405)
+=++.+++.|+ .+...+.|+.|+..|.++|..++=+ + ....++.|..-.|
T Consensus 100 ~~~~v~~~~~~~~i-----~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~p 157 (222)
T PRK07114 100 FNPDIAKVCNRRKV-----PYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPMP 157 (222)
T ss_pred CCHHHHHHHHHcCC-----CEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhccCC
Confidence 33444555543 3334456888999998888764322 1 2445555544444
No 363
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=20.73 E-value=7.9e+02 Score=23.93 Aligned_cols=76 Identities=20% Similarity=0.331 Sum_probs=47.1
Q ss_pred HHHHHHHHhCC--CCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCC
Q 037610 105 RSEIEAVLLLD--VSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDS 182 (405)
Q Consensus 105 ~~E~~~a~~~G--~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~s 182 (405)
.+++..+..+| |.|=--+|.....+++++++|.+.|+ +. ++++=| +...+.|
T Consensus 57 r~rIl~a~p~~~~F~PLMtlYLtd~~~peel~~a~~~g~-i~--------------------a~KlYP-----aGaTTNS 110 (344)
T COG0418 57 RERILKAVPAGHRFTPLMTLYLTDSTTPEELEEAKAKGV-IR--------------------AVKLYP-----AGATTNS 110 (344)
T ss_pred HHHHHHhCcCCCCCceeEEEEecCCCCHHHHHHHHhcCc-EE--------------------EEEecc-----CCccccC
Confidence 34566666666 44433456666678999999999986 21 233333 2234568
Q ss_pred CCCCCCChhhHHHHHHHHHHcCCeE
Q 037610 183 KYGAGHHPQEIMPLLKAAEASGLSV 207 (405)
Q Consensus 183 rfGi~~~~~e~~~~~~~~~~~~l~l 207 (405)
..|+. +.+.+..+++..++.|+-+
T Consensus 111 ~~GV~-~~~~~~pvle~Mq~~gmpL 134 (344)
T COG0418 111 DSGVT-DIEKIYPVLEAMQKIGMPL 134 (344)
T ss_pred cCCcC-cHHHHHHHHHHHHHcCCeE
Confidence 88884 4455666677666667653
No 364
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=20.70 E-value=2.7e+02 Score=24.85 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=27.7
Q ss_pred CCCCCCCCChhhHHHHHHHHHHcCCeEEEE-EEecCCC
Q 037610 181 DSKYGAGHHPQEIMPLLKAAEASGLSVVGV-SFHVGSE 217 (405)
Q Consensus 181 ~srfGi~~~~~e~~~~~~~~~~~~l~l~Gi-h~H~gs~ 217 (405)
..+|-+ ++++..++.+.+++.++.++|+ |+|..+.
T Consensus 57 ~~~~e~--dp~~q~e~~~~l~~~gl~vVGwYHSHP~~~ 92 (187)
T cd08067 57 GLDCEM--DPVSETEIRESLESRGLSVVGWYHSHPTFP 92 (187)
T ss_pred Cccccc--CHHHHHHHHHHHHHcCCEEEEEEecCCCCC
Confidence 357777 7777778888888889999996 7887665
No 365
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=20.66 E-value=6.8e+02 Score=23.89 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=52.9
Q ss_pred eHHHHHHHHHHHHHhCC-CCceeeeec--------------cCCcHHHHHHHHHcCC--eEEEcCHHHHHHHHhCCCCCC
Q 037610 57 DLGVVVSLYNHMISNLP-MIHPHYAVK--------------CNPEPALLEALAALGS--NFDCGSRSEIEAVLLLDVSPD 119 (405)
Q Consensus 57 d~~~l~~n~~~~~~~~~-~~~i~yavK--------------aN~~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~ 119 (405)
+.+.+++.++++.+.=. .++++..-. -.....+++...+.|. ..-+.....++.++++|+.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~G~~-- 195 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRAGVD-- 195 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC--
Confidence 36667777777665422 345543211 1114566777777786 4556677778888888873
Q ss_pred cEEEcCCCCCHHHHHHHHHcCCc
Q 037610 120 RIIYANPCKPVSHIKYAASVGVN 142 (405)
Q Consensus 120 ~Ii~~gp~k~~~~l~~a~~~gv~ 142 (405)
.+-.+...++++++.+.+.|+.
T Consensus 196 -~i~H~~~~~~~~~~~l~~~g~~ 217 (342)
T cd01299 196 -TIEHGFLIDDETIELMKEKGIF 217 (342)
T ss_pred -EEeecCCCCHHHHHHHHHCCcE
Confidence 3445556688889988898874
No 366
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.62 E-value=6.7e+02 Score=23.03 Aligned_cols=93 Identities=11% Similarity=0.115 Sum_probs=57.0
Q ss_pred EEEEeHHHHHH--HHHHHHHhCCCCceeeeecc--C----------C---cHHHHHHHHHcCC-eEEEcCH---------
Q 037610 53 FYLMDLGVVVS--LYNHMISNLPMIHPHYAVKC--N----------P---EPALLEALAALGS-NFDCGSR--------- 105 (405)
Q Consensus 53 ~~v~d~~~l~~--n~~~~~~~~~~~~i~yavKa--N----------~---~~~vl~~l~~~G~-g~~vaS~--------- 105 (405)
..++...++++ -++++.+.|++ ++..++=+ + . ...+++.+.+.|+ .+=+.+.
T Consensus 101 kvvigt~a~~~~~~l~~~~~~fg~-~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~ 179 (234)
T PRK13587 101 YCIVGTKGIQDTDWLKEMAHTFPG-RIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGP 179 (234)
T ss_pred EEEECchHhcCHHHHHHHHHHcCC-CEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCcc
Confidence 34555555543 35666666752 33333322 2 1 2678888888887 4555544
Q ss_pred -HH-HHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecC
Q 037610 106 -SE-IEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDS 148 (405)
Q Consensus 106 -~E-~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds 148 (405)
-| ++.+.+. .+ -.+++.|...+.+++..+.+.|+..+.+-+
T Consensus 180 ~~~li~~l~~~-~~-ipvi~~GGi~s~edi~~l~~~G~~~vivG~ 222 (234)
T PRK13587 180 NFELTGQLVKA-TT-IPVIASGGIRHQQDIQRLASLNVHAAIIGK 222 (234)
T ss_pred CHHHHHHHHHh-CC-CCEEEeCCCCCHHHHHHHHHcCCCEEEEhH
Confidence 33 3344443 22 248888989999999999999987666654
No 367
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=20.62 E-value=1.3e+03 Score=26.51 Aligned_cols=148 Identities=12% Similarity=0.071 Sum_probs=81.3
Q ss_pred EEEEeHHHHHHHHHHHHHhCCCCc----------eeeeeccCCcHHHHHHHHHc--C---CeEEEcCHHHHHHHHhCCCC
Q 037610 53 FYLMDLGVVVSLYNHMISNLPMIH----------PHYAVKCNPEPALLEALAAL--G---SNFDCGSRSEIEAVLLLDVS 117 (405)
Q Consensus 53 ~~v~d~~~l~~n~~~~~~~~~~~~----------i~yavKaN~~~~vl~~l~~~--G---~g~~vaS~~E~~~a~~~G~~ 117 (405)
..|+=...+-+.+.+.....++++ ..-+.=|+.++.-++.+.+. + +-+|+.+.+++..+.+. ++
T Consensus 572 IlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~-~D 650 (1042)
T PLN02819 572 VLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ-VD 650 (1042)
T ss_pred EEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC-CC
Confidence 456666667766665554445443 11123366666666666552 4 36778888888776553 42
Q ss_pred CCcEEEcCCCCCHHHHHHHHHcCCcEEEe-cCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhh--HH
Q 037610 118 PDRIIYANPCKPVSHIKYAASVGVNLTTV-DSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQE--IM 194 (405)
Q Consensus 118 ~~~Ii~~gp~k~~~~l~~a~~~gv~~i~v-ds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e--~~ 194 (405)
. -|+.+.+.....-++.|+++|+.+++. ...++.+.+.+.++++.+.+=+. . |+++..+. +.
T Consensus 651 a-VIsalP~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e--~------------GlDPGid~~lA~ 715 (1042)
T PLN02819 651 V-VISLLPASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCE--M------------GLDPGIDHMMAM 715 (1042)
T ss_pred E-EEECCCchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEEC--C------------ccCHHHHHHHHH
Confidence 2 233344445567778889999874333 23455566666665554433332 2 33111123 34
Q ss_pred HHHHHHHHcCCeEEEEEEecCC
Q 037610 195 PLLKAAEASGLSVVGVSFHVGS 216 (405)
Q Consensus 195 ~~~~~~~~~~l~l~Gih~H~gs 216 (405)
++++..+...=++.-+.+..|.
T Consensus 716 ~~Id~~~~~~GkI~s~~s~~GG 737 (1042)
T PLN02819 716 KMIDDAHERGGKVKSFTSYCGG 737 (1042)
T ss_pred HHHHhhcccCCcEEEEEEEEcC
Confidence 4555443333466777788775
No 368
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=20.56 E-value=8e+02 Score=23.96 Aligned_cols=49 Identities=10% Similarity=-0.021 Sum_probs=30.7
Q ss_pred EeHHHHHHHHHHHHHhCCCC--ceeeeeccCC------cHHHHHHHHHcCC-eEEEcC
Q 037610 56 MDLGVVVSLYNHMISNLPMI--HPHYAVKCNP------EPALLEALAALGS-NFDCGS 104 (405)
Q Consensus 56 ~d~~~l~~n~~~~~~~~~~~--~i~yavKaN~------~~~vl~~l~~~G~-g~~vaS 104 (405)
-+.+.+.+-++++++..+.. ++=..+|-.+ ...+++.+.+.|+ ++.+..
T Consensus 189 ~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 189 QYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 35567777777777655310 1223467665 3567888888888 777754
No 369
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.56 E-value=5.1e+02 Score=22.86 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=36.9
Q ss_pred ceeeeeccCC---cHHHHHHHHHcCC-eEEEc----CHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEE
Q 037610 76 HPHYAVKCNP---EPALLEALAALGS-NFDCG----SRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLT 144 (405)
Q Consensus 76 ~i~yavKaN~---~~~vl~~l~~~G~-g~~va----S~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i 144 (405)
+++..+.... ...+++.+.+.|+ .+++. +..|+....+.-. +.-....|+....++++.|++.|...+
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~-~~~~~g~gtvl~~d~~~~A~~~gAdgv 88 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKL-PECIIGTGTILTLEDLEEAIAAGAQFC 88 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC-CCcEEeEEEEEcHHHHHHHHHcCCCEE
Confidence 4444444433 4556666666776 56664 2234333222212 222244566677788888888887654
No 370
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=20.55 E-value=1.8e+02 Score=21.27 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=30.1
Q ss_pred HHHcCCeEEEcCHHHHHHHHhCCCCC-------CcEEEcCCCCCHHHHHHHHH
Q 037610 93 LAALGSNFDCGSRSEIEAVLLLDVSP-------DRIIYANPCKPVSHIKYAAS 138 (405)
Q Consensus 93 l~~~G~g~~vaS~~E~~~a~~~G~~~-------~~Ii~~gp~k~~~~l~~a~~ 138 (405)
+.+.|..+++-...+...+.+.|+.. .++.|.|-..+.++++.+++
T Consensus 24 ~~~~~i~~ei~~~~~~~~~~~ygv~~vPalvIng~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 24 AEELGIEVEIIDIEDFEEIEKYGVMSVPALVINGKVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHHTTEEEEEEETTTHHHHHHTT-SSSSEEEETTEEEEESS--HHHHHHHHHH
T ss_pred HHhcCCeEEEEEccCHHHHHHcCCCCCCEEEECCEEEEEecCCCHHHHHHHhC
Confidence 33457778888888888888888743 35666675567778777664
No 371
>PRK05926 hypothetical protein; Provisional
Probab=20.53 E-value=5.7e+02 Score=25.43 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=16.8
Q ss_pred ChhhHHHHHHHHHHcCCeEEEEEEec
Q 037610 189 HPQEIMPLLKAAEASGLSVVGVSFHV 214 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~~l~l~Gih~H~ 214 (405)
+.++..+.+..+++.+.+-.|+...+
T Consensus 234 t~edrv~~l~~Lr~Lq~~t~gf~~fI 259 (370)
T PRK05926 234 TPEDIVTHMSKLRALQDKTSGFKNFI 259 (370)
T ss_pred CHHHHHHHHHHHHhcCCccCCeeeeE
Confidence 66666666666776666666666555
No 372
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=20.47 E-value=8.9e+02 Score=24.44 Aligned_cols=40 Identities=13% Similarity=0.315 Sum_probs=19.4
Q ss_pred ChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHH
Q 037610 189 HPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAI 228 (405)
Q Consensus 189 ~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i 228 (405)
+.+++.+.++.+++.++..+.+.+=+|-...+.+.+.+.+
T Consensus 175 ~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l 214 (430)
T PRK08208 175 KRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESL 214 (430)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHH
Confidence 4555555555555555544444444443333444444433
No 373
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=20.45 E-value=8.7e+02 Score=24.29 Aligned_cols=93 Identities=11% Similarity=0.105 Sum_probs=62.5
Q ss_pred EEeHHHHHHHHHHHHHhCCCCceeeeeccCCc---HHHHHHHHHcCC-eEEEcCHH-----------------------H
Q 037610 55 LMDLGVVVSLYNHMISNLPMIHPHYAVKCNPE---PALLEALAALGS-NFDCGSRS-----------------------E 107 (405)
Q Consensus 55 v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~---~~vl~~l~~~G~-g~~vaS~~-----------------------E 107 (405)
+.+.+.+.+.++.+++..++.. -.+|-... ..+.+.+...|+ .+.|...+ |
T Consensus 195 ~~~~~~l~~~I~~lr~~~~~~p--V~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 195 IYSIEDLAQLIEDLREATGGKP--IGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCCHHHHHHHHHHHHHhCCCce--EEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 4677889999999999877533 34787764 677777766656 55554431 3
Q ss_pred HHHHH-hCCCCC-CcEEEcCCCCCHHHHHHHHHcCCcEEEecCH
Q 037610 108 IEAVL-LLDVSP-DRIIYANPCKPVSHIKYAASVGVNLTTVDSV 149 (405)
Q Consensus 108 ~~~a~-~~G~~~-~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~ 149 (405)
+..++ +.|... -.|+..|...+..++..|+..|...+.+-..
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~ 316 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTA 316 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechH
Confidence 33222 233221 2488889999999999999999876665543
No 374
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=20.39 E-value=7.6e+02 Score=23.59 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=40.1
Q ss_pred eeeccCC------cHHHHHHHHHc-C----CeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHc
Q 037610 79 YAVKCNP------EPALLEALAAL-G----SNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASV 139 (405)
Q Consensus 79 yavKaN~------~~~vl~~l~~~-G----~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~ 139 (405)
.-+|-|. ...-++.+.+. + +-+||-|++|++.|+++|. +.|++.+ .+++++++|++.
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~aga--DiImLDN--m~~e~~~~av~~ 228 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGA--DIIMLDN--MSPEELKEAVKL 228 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCC--CEEEecC--CCHHHHHHHHHH
Confidence 4578886 22344444443 3 4789999999999999986 4444443 579999999875
No 375
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.38 E-value=3.3e+02 Score=25.11 Aligned_cols=16 Identities=6% Similarity=-0.209 Sum_probs=7.5
Q ss_pred HHHHHHHHcCC-eEEEc
Q 037610 88 ALLEALAALGS-NFDCG 103 (405)
Q Consensus 88 ~vl~~l~~~G~-g~~va 103 (405)
..++.+.+.++ |+-+.
T Consensus 47 ~~~~~~~~~~~dgiii~ 63 (283)
T cd06279 47 SDSALVVSALVDGFIVY 63 (283)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 44444555554 44443
No 376
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=20.29 E-value=4.9e+02 Score=24.23 Aligned_cols=82 Identities=15% Similarity=0.124 Sum_probs=52.4
Q ss_pred cCCcHHHHHHHHHcCCeEEE-------cCHHHHHHHHhC----CCCCCcEEEcCCCCCHHHHHHHHHcCCc---EEEecC
Q 037610 83 CNPEPALLEALAALGSNFDC-------GSRSEIEAVLLL----DVSPDRIIYANPCKPVSHIKYAASVGVN---LTTVDS 148 (405)
Q Consensus 83 aN~~~~vl~~l~~~G~g~~v-------aS~~E~~~a~~~----G~~~~~Ii~~gp~k~~~~l~~a~~~gv~---~i~vds 148 (405)
.-+++.+++.+...|+.+-+ .+..++..++.+ |. ..++=. |..+...++.+++.|+. +..|+|
T Consensus 19 ~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~--~~~VRv-~~~~~~~i~~~Ld~Ga~gIivP~v~s 95 (249)
T TIGR02311 19 GLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPS--SPVVRP-AIGDPVLIKQLLDIGAQTLLVPMIET 95 (249)
T ss_pred eCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCC--CcEEEC-CCCCHHHHHHHhCCCCCEEEecCcCC
Confidence 44678899999988853222 344555444333 44 324333 33467799999987754 568999
Q ss_pred HHHHHHHHhHCCCCeEEEE
Q 037610 149 VEELDKIRNWHPKSDLLIR 167 (405)
Q Consensus 149 ~~el~~i~~~~~~~~v~lR 167 (405)
.+|++.+.+..+....+.|
T Consensus 96 ~e~a~~~v~~~~y~P~G~R 114 (249)
T TIGR02311 96 AEQAEAAVAATRYPPMGIR 114 (249)
T ss_pred HHHHHHHHHHcCCCCCCcC
Confidence 9999998887554444444
No 377
>PRK13772 formimidoylglutamase; Provisional
Probab=20.18 E-value=7.9e+02 Score=23.69 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=45.8
Q ss_pred CHHHHHHHHHcCCcEEEecCHHH--H----HHHHhHCC-CCeEEEEEecCCCCCCC----CCCCCCCCCCCChhhHHHHH
Q 037610 129 PVSHIKYAASVGVNLTTVDSVEE--L----DKIRNWHP-KSDLLIRIKSPDDSGAK----YPLDSKYGAGHHPQEIMPLL 197 (405)
Q Consensus 129 ~~~~l~~a~~~gv~~i~vds~~e--l----~~i~~~~~-~~~v~lRi~~~~~~~~~----~~~~srfGi~~~~~e~~~~~ 197 (405)
++++..++.+.|+..+..+.+.+ + +++.+... ...+.|-+..+.- ... ..+-...|+ +..|+.+++
T Consensus 199 ~~~~~~~~~~~g~~~~~~~e~~~~g~~~~~~~i~~~l~~~~~vylS~DiD~l-Dps~aPGvgtP~pgGl--t~~e~~~il 275 (314)
T PRK13772 199 TPALFARADALGVRYVEDVDMQERHLDARLAELDALLDAADHVYLTIDLDVL-PAAVAPGVSAPAAYGV--PLPVVEEIV 275 (314)
T ss_pred ChhHHHHHHhCCeEEEEhhhhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCc-CcccCCCCCCCCCCCC--CHHHHHHHH
Confidence 67788888899986444443323 2 22222221 2245555554331 111 223367899 999999999
Q ss_pred HHHHHcCCeEEEEEEe
Q 037610 198 KAAEASGLSVVGVSFH 213 (405)
Q Consensus 198 ~~~~~~~l~l~Gih~H 213 (405)
+.+.... +++|+.+=
T Consensus 276 ~~l~~~~-~v~g~Dvv 290 (314)
T PRK13772 276 LHVRASG-KLRVADLA 290 (314)
T ss_pred HHHHhcC-CeeEEEEE
Confidence 8864432 56776553
Done!