RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 037610
         (405 letters)



>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 240

 Score =  112 bits (279), Expect = 3e-29
 Identities = 94/243 (38%), Positives = 132/243 (54%), Gaps = 25/243 (10%)

Query: 57  DLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDV 116
           DLG ++  +   +  LP + P YAVKCN   A++  LAA+G+ FDC S++EI+ V  L V
Sbjct: 1   DLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGV 60

Query: 117 SPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGA 176
             +R+IYANPCK VS IKYAAS GV + T DS  EL K+   HPK+ L++RI   DDS A
Sbjct: 61  PAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIA-TDDSKA 119

Query: 177 KYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFD 236
              L  K+GA         LL+ A+   + V+GVSFHVGS  T+   F  A++ A+ VFD
Sbjct: 120 VCRLSVKFGATLK--TSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFD 177

Query: 237 TAART---------------------SNNKMRKLFKLIFRELLPG-SSLKVISEPGRFFA 274
            A                           ++  +      +  P  S +++I+EPGR++ 
Sbjct: 178 MATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYV 237

Query: 275 ASA 277
           ASA
Sbjct: 238 ASA 240


>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine
           decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]}
          Length = 169

 Score =  104 bits (261), Expect = 2e-27
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 29/169 (17%)

Query: 254 FRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELRE--------------YWIN 299
              L    S+    E   FF A  FTL   +I K+V   ++               Y++N
Sbjct: 9   RDALCKKISMNTCDEGDPFFVA--FTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVN 66

Query: 300 DGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLP 359
           DG +GS   +  D A+ +  P              + Y S+V+GPTCD  D++   + LP
Sbjct: 67  DGVYGSFNCILYDHAVVRPLP------QREPIPNEKLYPSSVWGPTCDGLDQIVERYYLP 120

Query: 360 ELEVNDWLVFSEMGAYTTACGTNFNGYSTVAI-------PTYVVRSNQT 401
           E++V +WL+F +MGAYT    ++FNG+ +  I       P +VVR  ++
Sbjct: 121 EMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS 169


>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase
           {Trypanosoma brucei [TaxId: 5691]}
          Length = 240

 Score =  100 bits (250), Expect = 2e-25
 Identities = 84/243 (34%), Positives = 125/243 (51%), Gaps = 25/243 (10%)

Query: 57  DLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDV 116
           DLG +V  +      LP + P YAVKCN +  +L  LAALG+ FDC S +EI+ V  + V
Sbjct: 1   DLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGV 60

Query: 117 SPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGA 176
            P++IIYANPCK +SHI+YA   GV++ T D V+EL+K+   HPK+ +++RI + D    
Sbjct: 61  PPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDSLAR 120

Query: 177 KYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFD 236
                         ++   +L+ A+   + V GVSFHVGS +T+ + F  AI+ ++ VFD
Sbjct: 121 CRLSVKFG---AKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFD 177

Query: 237 TAARTSNNKMRKLFKLIF----------------------RELLPGSSLKVISEPGRFFA 274
                  N         F                      +   P   L +++EPGR++ 
Sbjct: 178 MGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYV 237

Query: 275 ASA 277
           ASA
Sbjct: 238 ASA 240


>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine
           decarboxylase (ODC) {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 177

 Score = 86.7 bits (214), Expect = 8e-21
 Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 22/163 (13%)

Query: 253 IFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELR--------------EYWI 298
             +++L     +V S   +     AFTL   II K+   + +               Y++
Sbjct: 18  TAKDILDQKINEVSSSDDKDAFYVAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYV 77

Query: 299 NDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKL 358
           NDG +GS   +  D A  K             K   + Y+S+++GPTCD  D +     L
Sbjct: 78  NDGVYGSFNCILYDHAHVKALLQK------RPKPDEKYYSSSIWGPTCDGLDRIVERCNL 131

Query: 359 PELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSNQT 401
           PE+ V DW++F  MGAYT A  + FNG+    I  Y V S   
Sbjct: 132 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPNI--YYVMSRPM 172


>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 265

 Score = 75.5 bits (184), Expect = 5e-16
 Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 17/257 (6%)

Query: 57  DLGVVVSLYNHMISNLPM-IHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLD 115
           D     S      +      + HYA K      +   ++  G   D  +  E+   L   
Sbjct: 1   DEDDFRSRCRETAAAFGSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHAS 60

Query: 116 VSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSG 175
             P+RI      K VS +  A   GV    VDS+ E++++     ++ ++  +      G
Sbjct: 61  FPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVG 120

Query: 176 AK---------YPLDSKYGAGH-HPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFR 225
            +            D K+G        +  + +      L +VG+  H+GS+  +   F 
Sbjct: 121 VEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFE 180

Query: 226 GAIAAAKAVFDTAARTSNNKMRKLFKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQII 285
            A      +     R    +           +  G  L +   P            A  +
Sbjct: 181 LAAHRVIGLL----RDVVGEFGPEKTAQIATVDLGGGLGISYLPSD--DPPPIAELAAKL 234

Query: 286 GKRVRGELREYWINDGK 302
           G  V  E     +   K
Sbjct: 235 GTIVSDESTAVGLPTPK 251


>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA
           {Escherichia coli [TaxId: 562]}
          Length = 247

 Score = 73.2 bits (178), Expect = 2e-15
 Identities = 42/251 (16%), Positives = 78/251 (31%), Gaps = 35/251 (13%)

Query: 57  DLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDV 116
           D  ++      +     ++   +A K      +L  +   G   D  S  EIE  L    
Sbjct: 1   DAQIIRRQIAAL-KQFDVVR--FAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGY 57

Query: 117 SP----DRIIYANPCKPVSHIKYAA--SVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKS 170
           +P    D I++       + ++  +   + VN  +VD +++L ++   H     +     
Sbjct: 58  NPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFG 117

Query: 171 PDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAA 230
              S            G    ++   L   +   L +VG+  H+GS        +   A 
Sbjct: 118 HGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAM 177

Query: 231 AKAVFDTAARTSNNKM------------------------RKLFKLIFRELLPGSSLKVI 266
            + V +                                      + I R L  G  +K+ 
Sbjct: 178 VRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHL--GHPVKLE 235

Query: 267 SEPGRFFAASA 277
            EPGRF  A +
Sbjct: 236 IEPGRFLVAQS 246


>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 264

 Score = 65.6 bits (158), Expect = 1e-12
 Identities = 46/235 (19%), Positives = 72/235 (30%), Gaps = 35/235 (14%)

Query: 78  HYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAA 137
            YA K N   A+   LA LG   D  S  E+    L +V   +I++   CK    I    
Sbjct: 30  AYAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGI 89

Query: 138 SVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSG---------AKYPLDSKYGAGH 188
              +    VDS+ EL  I     +      +    +           +     +K+G   
Sbjct: 90  EANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDV 149

Query: 189 HPQEIMPL-LKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAAR------- 240
                M     A E   ++VVGV  H+GS+ T+ + F                       
Sbjct: 150 ESGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIED 209

Query: 241 ------------------TSNNKMRKLFKLIFRELLPGSSLKVISEPGRFFAASA 277
                             T  +    +   + +         +I EPGR   A+A
Sbjct: 210 VNLGGGLGIPYYKDKQIPTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATA 264


>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase
           LysA {Escherichia coli [TaxId: 562]}
          Length = 174

 Score = 60.4 bits (146), Expect = 1e-11
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 29/152 (19%)

Query: 263 LKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSL-------AWVTCDEAI 315
           L++ +E G         L  Q+   +  G  R + + D  F  L       ++       
Sbjct: 17  LRLPAEFGCPVWVYV--LITQVRSVKQMGS-RHFVLVDAGFNDLMRPAMYGSYHHISALA 73

Query: 316 AKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTG-------HKLPELEVNDWLV 368
           A    L  A           T  + V GP C++ D              LPE++  D+LV
Sbjct: 74  ADGRSLEHA----------PTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLV 123

Query: 369 FSEMGAYTTACGTNFNGYSTVAIPTYVVRSNQ 400
             + GAY  +  +N+N    +     +  + Q
Sbjct: 124 LHDTGAYGASMSSNYNSRPLLPE--VLFDNGQ 153


>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase
           LysA {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 181

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 22/151 (14%)

Query: 264 KVISEPGRFFAASAFTLYAQIIG--KRVR---GELREYWINDGKFGSLAWVTCDEAIAKC 318
           ++  E G        TLY   +G  K V       R Y   DG            A    
Sbjct: 32  QLAQEYGTPLFV-IITLYE--VGTVKDVDVSATAHRRYVSVDGGMSDNIRTALYGAQYDV 88

Query: 319 TPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLP-ELEVNDWLVFSEMGAYTT 377
             +   S               + G  C++ D +     +P ++   D +  +  GAY  
Sbjct: 89  RLVSRVSDAPPVPA-------RLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCY 141

Query: 378 ACGTNFNGYSTVAIP------TYVVRSNQTL 402
           +  + +N     A+         +V   +T+
Sbjct: 142 SLSSRYNMVGRPAVVAVHAGNARLVLRRETV 172


>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase
           LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 170

 Score = 43.9 bits (103), Expect = 7e-06
 Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 16/134 (11%)

Query: 255 RELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSL---AWVTC 311
           R  + G     ++E           L  ++   +      ++ + D     +   A    
Sbjct: 13  RFFIDGYDAIELAEKFGTPLYVMGYLLGKVHHIKETPV-TKWVMIDAGMNDMMRPAMYEA 71

Query: 312 DEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSE 371
              I  C                     ++ G  C++ D      +L ++EV D L   +
Sbjct: 72  YHHIINCKVKNE------------KEVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFD 119

Query: 372 MGAYTTACGTNFNG 385
           +GAY  +   N+N 
Sbjct: 120 VGAYGISMANNYNA 133


>d1rhca_ c.1.16.3 (A:) Coenzyme F420 dependent secondary alcohol
           dehydrogenase {Archaeon Methanoculleus thermophilicus
           [TaxId: 2200]}
          Length = 330

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 3/59 (5%)

Query: 188 HHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKM 246
           + P + +     AE  G   V V  H      + A    A A   A       T    +
Sbjct: 14  YRPMDALEQAIRAEKVGFDSVWVDDHFHPWYHDNAQSAQAWAWMGAA---LQATKKVFI 69


>d1gbsa_ d.2.1.5 (A:) Lysozyme {Australian black swan (Cygnus
           atratus) [TaxId: 8868]}
          Length = 185

 Score = 28.2 bits (62), Expect = 1.4
 Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 11/83 (13%)

Query: 65  YNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRS----EIEAVLLLDVSPDR 120
           Y  +I            K   EPA++  + +  S+     ++          L+ V    
Sbjct: 48  YKTIIKK-------VGEKLCVEPAVIAGIISRESHAGKVLKNGWGDRGNGFGLMQVDKRS 100

Query: 121 IIYANPCKPVSHIKYAASVGVNL 143
                      HI    ++  + 
Sbjct: 101 HKPQGTWNGEVHITQGTTILTDF 123


>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent
           tetrahydromethanopterin reductase {Archaeon Methanopyrus
           kandleri [TaxId: 2320]}
          Length = 347

 Score = 28.6 bits (62), Expect = 1.6
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 187 GHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAA 231
              P +I  L+K AE +G     +  H  + +  +       A  
Sbjct: 12  DDKPTKIAHLIKVAEDNGFEYAWICDHYNNYS--YMGVLTLAAVI 54


>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId:
           7091]}
          Length = 119

 Score = 26.7 bits (59), Expect = 2.5
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 356 HKLPELEVNDW--LVFSEMGAYTTACGTNFNGYS 387
           H   E  + +W  LV  E    T+   TN NG  
Sbjct: 15  HGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSK 48


>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 26.3 bits (57), Expect = 3.8
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 109 EAVLLLDVSPDRIIYANP 126
           +A+  +D     I+ AN 
Sbjct: 9   KAIFTVDAKTTEILVAND 26


>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer
           {Caenorhabditis elegans [TaxId: 6239]}
          Length = 250

 Score = 26.7 bits (58), Expect = 4.2
 Identities = 17/116 (14%), Positives = 36/116 (31%)

Query: 119 DRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKY 178
              +  N    V   +    +  N  + +S ++L   R         +   + + SG+  
Sbjct: 107 AEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQ 166

Query: 179 PLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAV 234
                Y        +     A +    +V+ V+F  G   TN      A+   ++ 
Sbjct: 167 FPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALTVEQST 222


>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Carboxydothermus hydrogenoformans [TaxId: 129958]}
          Length = 633

 Score = 27.1 bits (60), Expect = 4.6
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 27/75 (36%)

Query: 187 GHHP----------QEIMPLLKAAEASGLSVVGVSFHVGSEATN--------------FA 222
           GH+P          +E+    +AA A+G++VVG+    G+E                  A
Sbjct: 257 GHNPVLSDIIVSVSKEMENEARAAGATGINVVGIC-CTGNEVLMRHGIPACTHSVSQEMA 315

Query: 223 AFRGAIAAAKAVFDT 237
              GA+ A   + D 
Sbjct: 316 MITGALDA--MILDY 328


>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
           tetrahydromethanopterin reductase {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 321

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 184 YGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAA 231
           +      ++I+ L+K AE  G     ++ H  ++          IA  
Sbjct: 7   FVPNEPIEKIVKLVKLAEDVGFEYAWITDHYNNKNVYETL--ALIAEG 52


>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 179

 Score = 25.8 bits (55), Expect = 7.6
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)

Query: 217 EATNFAAFRGAIAAAKAVFDTAARTSNNKMRKLFKLIFRELL 258
           +  N A   GA        + +A  S N +R +F +     +
Sbjct: 140 QGANMAKQIGAAT----YIECSALQSENSVRDIFHVATLACV 177


>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 190

 Score = 25.9 bits (56), Expect = 7.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 20 MGGQRVTTVVTKDELTEFMQSTILKRQEFDEV 51
          MG +  T+ ++KD+LT   QST   R+E  + 
Sbjct: 1  MGAK--TSKLSKDDLTCLKQSTYFDRREIQQW 30


>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 140

 Score = 25.5 bits (55), Expect = 8.2
 Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 2/63 (3%)

Query: 333 LTRTYNSTVFGPTCDAFDEVFTGHKL-PELEVNDWLVFSEM-GAYTTACGTNFNGYSTVA 390
           +      T+  P+ +A++     + L    ++   L    +            N      
Sbjct: 24  INSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDRLNVDKIRQKNANLIAQ 83

Query: 391 IPT 393
           +PT
Sbjct: 84  VPT 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0424    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,525,115
Number of extensions: 71730
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 26
Length of query: 405
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,213,086
Effective search space: 385761348
Effective search space used: 385761348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)