BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037611
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2
SV=1
Length = 112
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 61/74 (82%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+GKTSKR F RN+I+EV+G APYEKRI L KVGKDKRALK+AKRKL T++RAK K E
Sbjct: 33 KGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92
Query: 65 MSNVLCRMRAAGGG 78
MS+VL +MR+ GGG
Sbjct: 93 MSSVLRKMRSGGGG 106
>sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3
SV=1
Length = 108
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 60/74 (81%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+GKTSKR F RN+I+EV+G APYEKRI L KVGKDKRALK+AKRKL T++RAK K E
Sbjct: 29 KGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 88
Query: 65 MSNVLCRMRAAGGG 78
MS+VL +MR+ G G
Sbjct: 89 MSSVLRKMRSGGAG 102
>sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2
SV=1
Length = 113
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 59/74 (79%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+GKTSKR F R +IREV+G APYEKRI L KVGKDKRALK+AKRKL T++RAK K E
Sbjct: 33 KGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92
Query: 65 MSNVLCRMRAAGGG 78
MS+VL +MR+ GG
Sbjct: 93 MSSVLRKMRSLGGA 106
>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3
SV=1
Length = 101
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G S+RV R V+REV+G+APYE+R+ L KVGKDKRALK+ KRKL T+ R K K E
Sbjct: 27 KGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREE 86
Query: 65 MSNVLCRMRAAGGG 78
M+ VL +M+AA G
Sbjct: 87 MAGVLRKMQAASKG 100
>sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1
Length = 110
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G SK F R++IREV GFAP+E+R L KV KDKRALK K++L T+ R K K E
Sbjct: 30 KGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDE 89
Query: 65 MSNVLCRMRAAGGGKKK 81
+SNVL R A K+K
Sbjct: 90 LSNVLVAQRKAAAHKEK 106
>sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2
Length = 106
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+GKTSKR HF RN+IREV+GF PYEKRI L KVGKDKRALK+ + K+ + +K + E
Sbjct: 33 KGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVGHSQESKEE--E 90
Query: 65 MSNVLC 70
+V C
Sbjct: 91 RGDVQC 96
>sp|P49630|RL36_DROME 60S ribosomal protein L36 OS=Drosophila melanogaster GN=RpL36 PE=3
SV=1
Length = 115
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 45/62 (72%)
Query: 14 FERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMR 73
F R+++REV G APYEKR L KV KDKRALK KR+L T+ RAK K E+SN+L ++R
Sbjct: 49 FMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108
Query: 74 AA 75
A
Sbjct: 109 KA 110
>sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3
SV=1
Length = 105
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G+ +K F R++IREV GFAPYE+R L KV KDKRALK K+++ T+ RAK K E
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREE 89
Query: 65 MSNVL 69
+SNVL
Sbjct: 90 LSNVL 94
>sp|Q66KU4|RL36_XENLA 60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1
Length = 105
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G+ +K F R++IREV GFAPYE+R L KV KDKRALK K+++ T+ RAK K E
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREE 89
Query: 65 MSNVL 69
+SNVL
Sbjct: 90 LSNVL 94
>sp|Q98TF6|RL36_CHICK 60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1
Length = 105
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G+ +K F R++IREV GFAPYE+R L KV KDKRALK K+++ T+ RAK K E
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89
Query: 65 MSNVL 69
+SNVL
Sbjct: 90 LSNVL 94
>sp|Q5RAZ9|RL36_PONAB 60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3
Length = 105
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G+ +K F R++IREV GFAPYE+R L KV KDKRALK K+++ T+ RAK K E
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89
Query: 65 MSNVL 69
+SNVL
Sbjct: 90 LSNVL 94
>sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3
Length = 105
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G+ +K F R++IREV GFAPYE+R L KV KDKRALK K+++ T+ RAK K E
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89
Query: 65 MSNVL 69
+SNVL
Sbjct: 90 LSNVL 94
>sp|Q92365|RL36A_SCHPO 60S ribosomal protein L36-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl36a PE=3 SV=2
Length = 99
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 52/71 (73%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G+ SKR F R+++REV+GFAPYE+R+ L + +DKRA KLAK++L T +RAK K E
Sbjct: 28 KGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEE 87
Query: 65 MSNVLCRMRAA 75
+++V+ R A
Sbjct: 88 LTSVIQSSRLA 98
>sp|Q8UW19|RL36_LAPHA 60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3
SV=1
Length = 105
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G+ +K F R++IREV GFAPYE+R L KV KDKRALK K+++ T+ RAK K E
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89
Query: 65 MSNVL 69
+SNVL
Sbjct: 90 LSNVL 94
>sp|Q3T171|RL36_BOVIN 60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3
Length = 105
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G+ +K F R++IREV GFAPYE+R L KV KDKRALK K+++ T+ RAK K E
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89
Query: 65 MSNVL 69
+SNVL
Sbjct: 90 LSNVL 94
>sp|Q6Q415|RL36_DANRE 60S ribosomal protein L36 OS=Danio rerio GN=rpl36 PE=3 SV=1
Length = 105
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G+ +K F R++IREV GFAPYE+R L KV KDKRALK K+++ T+ RAK K E
Sbjct: 30 RGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89
Query: 65 MSNVL 69
+SN L
Sbjct: 90 LSNTL 94
>sp|P49181|RL36_CAEEL 60S ribosomal protein L36 OS=Caenorhabditis elegans GN=rpl-36 PE=1
SV=3
Length = 104
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G SK+ R ++RE++GFAPYE+R+ + ++ KDKRALK KR++ T+ RAK K E
Sbjct: 32 KGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREE 91
Query: 65 MSNVLCRMRAA 75
+ NV+ R A
Sbjct: 92 LQNVIIAQRKA 102
>sp|Q90YT2|RL36_ICTPU 60S ribosomal protein L36 OS=Ictalurus punctatus GN=rpl36 PE=3
SV=1
Length = 105
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 6 GKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEM 65
G+ +K F R++IREV GFAPYE+R L KV KDKRALK K+++ T+ RAK K E+
Sbjct: 31 GRLTKHSKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREEL 90
Query: 66 SNVL 69
SN+L
Sbjct: 91 SNIL 94
>sp|O94658|RL36B_SCHPO 60S ribosomal protein L36-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl36b PE=3 SV=1
Length = 99
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 51/71 (71%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G SKR F R+++REV+GFAPYE+R+ L + +DKRA KLAK++L T +RAK K E
Sbjct: 28 KGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEE 87
Query: 65 MSNVLCRMRAA 75
+++V+ R A
Sbjct: 88 LTSVIQSSRLA 98
>sp|P39032|RL36_RAT 60S ribosomal protein L36 OS=Rattus norvegicus GN=Rpl36 PE=1 SV=2
Length = 105
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGE 64
+G+ +K F R++IREV FAPYE+R L KV KDKRALK K+++ T+ RAK K E
Sbjct: 30 RGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89
Query: 65 MSNVL 69
+SNVL
Sbjct: 90 LSNVL 94
>sp|Q9HFR7|RL36_TRIHM 60S ribosomal protein L36 OS=Trichoderma hamatum GN=rpl36 PE=3 SV=1
Length = 105
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%)
Query: 1 IATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKM 60
++ +G SKR F R V++EV+G APYE+R+ L + KDKRA KLAK++L T+ RAK
Sbjct: 30 VSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRARKLAKKRLGTFGRAKR 89
Query: 61 KHGEMSNVLCRMRAA 75
K E+ V+ R A
Sbjct: 90 KVDELQRVIAESRRA 104
>sp|Q55AQ9|RL36_DICDI 60S ribosomal protein L36 OS=Dictyostelium discoideum GN=rpl36
PE=3 SV=1
Length = 105
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 9 SKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNV 68
+KRV R+VIRE+SGF+PYE+R+ L K G DKRALK+AK++L + + K K +++N+
Sbjct: 39 TKRVAAIRDVIREISGFSPYERRVSELLKSGLDKRALKVAKKRLGSIQAGKKKRDDIANI 98
>sp|P47964|RL36_MOUSE 60S ribosomal protein L36 OS=Mus musculus GN=Rpl36 PE=2 SV=2
Length = 105
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 14 FERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVL 69
F R++IREV GFAPYE+R L KV K KRALK K+++ T+ RAK K E+SNVL
Sbjct: 39 FVRDMIREVCGFAPYERRAMELLKVSKSKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|O14455|RL36B_YEAST 60S ribosomal protein L36-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL36B PE=1 SV=3
Length = 100
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 1 IATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKM 60
I+ +G S R F R+++RE++G +PYE+R+ L + +KRA K+AK++L ++ RAK
Sbjct: 26 ISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKA 85
Query: 61 KHGEMSNVLCRMR 73
K EM+N++ R
Sbjct: 86 KVEEMNNIIAASR 98
>sp|P05745|RL36A_YEAST 60S ribosomal protein L36-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL36A PE=1 SV=3
Length = 100
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 1 IATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKM 60
I+ +G S R F R+++RE++G +PYE+R+ L + +KRA K+AK++L ++ RAK
Sbjct: 26 ISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKA 85
Query: 61 KHGEMSNVLCRMR 73
K EM+N++ R
Sbjct: 86 KVEEMNNIIAASR 98
>sp|Q24F59|RL36_TETTS 60S ribosomal protein L36 OS=Tetrahymena thermophila (strain
SB210) GN=RPL36 PE=1 SV=1
Length = 104
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 3/60 (5%)
Query: 5 QGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVG--KD-KRALKLAKRKLCTYERAKMK 61
+GK KRV R VIREV+GFAPYEKRI L K G KD K+A K+A+++L T+ RAK+K
Sbjct: 31 KGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVK 90
>sp|P0C6E6|RL36X_HUMAN Putative 60S ribosomal protein L36-like 1 OS=Homo sapiens PE=5 SV=1
Length = 105
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 6 GKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEM 65
G+ +K R +I+EV GF PYE+ L KV KDK+ALK K+++ T+ K K E+
Sbjct: 31 GRPTKHTKCVRGMIQEVCGFTPYERCTMELLKVSKDKQALKFIKKRVGTHIHTKRKREEL 90
Query: 66 SNVLCRMRAAGGGK 79
SNVL R K
Sbjct: 91 SNVLAITRKVAAMK 104
>sp|P47834|RL36_CANAX 60S ribosomal protein L36 OS=Candida albicans GN=RPL36 PE=3 SV=1
Length = 99
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 50/73 (68%)
Query: 1 IATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKM 60
I+ +G +S+R F R++++EV+G APYE+R+ L + +KRA KLAK++L T++RA
Sbjct: 25 ISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNAGEKRAKKLAKKRLGTHKRALR 84
Query: 61 KHGEMSNVLCRMR 73
K EM+ V+ R
Sbjct: 85 KVEEMTQVIAESR 97
>sp|Q03001|DYST_HUMAN Dystonin OS=Homo sapiens GN=DST PE=1 SV=4
Length = 7570
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 13 HFERNVIREV-SGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYER---AKMKHGEMSNV 68
HF+ N IRE+ S FA ++ +D + VG+D L+ K + + + A M + +N
Sbjct: 5175 HFQ-NTIREMFSQFAEFDDELDSMAPVGRDAETLQKQKETIKAFLKKLEALMASNDNANK 5233
Query: 69 LCRMRAA 75
C+M A
Sbjct: 5234 TCKMMLA 5240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,404,054
Number of Sequences: 539616
Number of extensions: 943152
Number of successful extensions: 2052
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2022
Number of HSP's gapped (non-prelim): 32
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)