Query 037611
Match_columns 82
No_of_seqs 113 out of 199
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 03:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_Q RPL36, 60S ribosomal pr 100.0 4.8E-43 1.6E-47 237.9 6.9 73 2-74 28-103 (104)
2 3izc_k 60S ribosomal protein R 100.0 2.5E-44 8.7E-49 242.8 -0.2 74 2-75 27-100 (100)
3 3iz5_k 60S ribosomal protein L 100.0 1.2E-44 4E-49 248.4 -2.0 76 2-77 30-105 (112)
4 3qks_C DNA double-strand break 53.5 3.9 0.00013 22.5 0.6 13 25-37 4-16 (34)
5 3r0a_A Putative transcriptiona 41.0 14 0.0005 23.1 1.9 26 15-40 14-39 (123)
6 2oyn_A Hypothetical protein MJ 36.2 17 0.00057 25.2 1.8 18 13-30 27-44 (146)
7 2yy0_A C-MYC-binding protein; 29.1 68 0.0023 18.3 3.4 10 44-53 3-12 (53)
8 3tgu_G UQCRQ, mitochondrial ub 24.9 12 0.00041 23.5 -0.5 13 23-35 16-28 (81)
9 3cx5_H Cytochrome B-C1 complex 19.7 20 0.00068 23.1 -0.3 13 23-35 26-38 (93)
10 1pp9_G Ubiquinol-cytochrome C 19.5 18 0.00062 22.6 -0.5 13 23-35 16-28 (81)
No 1
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=100.00 E-value=4.8e-43 Score=237.90 Aligned_cols=73 Identities=47% Similarity=0.665 Sum_probs=71.8
Q ss_pred ccccCcCcchhHHHHHHHHHhhccchhhhhhhhhccccc---hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037611 2 ATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGK---DKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRA 74 (82)
Q Consensus 2 ~~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~ELlk~~k---dKrALKf~KKrlGth~RAKrK~eel~~vl~~~Rk 74 (82)
|+++|.+|||++||||||+|||||||||+|+||||++|+ |||||||+|+|||||+|||+|+|||+|||++||+
T Consensus 28 s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~RAKrKreel~~vl~~~Rk 103 (104)
T 4a18_Q 28 VQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVKKALLEEAVRAQRK 103 (104)
T ss_dssp TTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999 9999999999999999999999999999999996
No 2
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=100.00 E-value=2.5e-44 Score=242.77 Aligned_cols=74 Identities=38% Similarity=0.642 Sum_probs=72.3
Q ss_pred ccccCcCcchhHHHHHHHHHhhccchhhhhhhhhccccchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Q 037611 2 ATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRAA 75 (82)
Q Consensus 2 ~~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~ELlk~~kdKrALKf~KKrlGth~RAKrK~eel~~vl~~~Rk~ 75 (82)
|+++|.+|||++||||||+|||||||||+|+||||++|+|||||||+|+|||||+|||+|+|||+|||++||++
T Consensus 27 s~~kg~~tK~tkfVrdiIrEV~GfaPYErr~mELLkvskdKrAlKf~KKRlGth~RAKrKreel~~vl~~~Rk~ 100 (100)
T 3izc_k 27 SYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASRRH 100 (100)
T ss_dssp CSSCSHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHTSCCSHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCC
T ss_pred ccccCCCCchhHHHHHHHHHHhcCchhHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999973
No 3
>3iz5_k 60S ribosomal protein L36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_k
Probab=100.00 E-value=1.2e-44 Score=248.40 Aligned_cols=76 Identities=70% Similarity=0.974 Sum_probs=68.7
Q ss_pred ccccCcCcchhHHHHHHHHHhhccchhhhhhhhhccccchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc
Q 037611 2 ATAQGKTSKRVHFERNVIREVSGFAPYEKRIDVLPKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRAAGG 77 (82)
Q Consensus 2 ~~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~ELlk~~kdKrALKf~KKrlGth~RAKrK~eel~~vl~~~Rk~~a 77 (82)
|+++|.+|||++||||||+|||||||||+|+||||++|+|||||||+|+|||||+|||+|+|||+|||++||++++
T Consensus 30 s~~kg~ltK~tkfVrdiIrEV~GfAPYErR~mELLKvskDKRALKf~KKRlGth~RAKrKreel~~vl~~~Rka~~ 105 (112)
T 3iz5_k 30 SDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGG 105 (112)
T ss_dssp ------CTTTSSCSHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHSSCCSHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred ccccCCCcchhHHHHHHHHHHhcCchHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999754
No 4
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=53.45 E-value=3.9 Score=22.47 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=9.3
Q ss_pred cchhhhhhhhhcc
Q 037611 25 FAPYEKRIDVLPK 37 (82)
Q Consensus 25 faPYEkr~~ELlk 37 (82)
|.|+|.+++||+-
T Consensus 4 Ft~~ElKiI~l~G 16 (34)
T 3qks_C 4 FTEFELKIIDILG 16 (34)
T ss_dssp --CHHHHHHHHC-
T ss_pred ccHHHHHHHHHHc
Confidence 7899999999963
No 5
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=41.00 E-value=14 Score=23.11 Aligned_cols=26 Identities=8% Similarity=-0.078 Sum_probs=21.2
Q ss_pred HHHHHHHhhccchhhhhhhhhccccc
Q 037611 15 ERNVIREVSGFAPYEKRIDVLPKVGK 40 (82)
Q Consensus 15 vr~~IrEv~GfaPYEkr~~ELlk~~k 40 (82)
+.+++..+.|++|.|..++..|-...
T Consensus 14 ~~~~l~~~~gLt~~e~~il~~L~~~~ 39 (123)
T 3r0a_A 14 VEDVIKCALNLTKADLNVMKSFLNEP 39 (123)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHST
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 36677888999999999999886443
No 6
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=36.24 E-value=17 Score=25.18 Aligned_cols=18 Identities=28% Similarity=0.676 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhccchhhh
Q 037611 13 HFERNVIREVSGFAPYEK 30 (82)
Q Consensus 13 kfvr~~IrEv~GfaPYEk 30 (82)
.+.++-++|.+||.||.=
T Consensus 27 ~~Y~~qf~~~LGF~PfPG 44 (146)
T 2oyn_A 27 PPYKEIFKKILGFEPYEG 44 (146)
T ss_dssp HHHHHHHHHHHSSCCCSS
T ss_pred HHHHHHHHHHhCCcCCCC
Confidence 456888999999999963
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.07 E-value=68 Score=18.31 Aligned_cols=10 Identities=40% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHHHHHHhhh
Q 037611 44 ALKLAKRKLC 53 (82)
Q Consensus 44 ALKf~KKrlG 53 (82)
|+.|+|+-||
T Consensus 3 AlefIk~~LG 12 (53)
T 2yy0_A 3 ALDFLKHHLG 12 (53)
T ss_dssp ----------
T ss_pred HHHHHHHHcC
Confidence 6778888887
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=24.86 E-value=12 Score=23.48 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=10.4
Q ss_pred hccchhhhhhhhh
Q 037611 23 SGFAPYEKRIDVL 35 (82)
Q Consensus 23 ~GfaPYEkr~~EL 35 (82)
.+++|||.+.+--
T Consensus 16 YsLSP~~Qr~~ag 28 (81)
T 3tgu_G 16 YSLSPFEQRAIPN 28 (81)
T ss_dssp EEECTTTBCSSCC
T ss_pred EEeCccccccccc
Confidence 5789999998754
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=19.70 E-value=20 Score=23.11 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=10.7
Q ss_pred hccchhhhhhhhh
Q 037611 23 SGFAPYEKRIDVL 35 (82)
Q Consensus 23 ~GfaPYEkr~~EL 35 (82)
.+++|||.++|--
T Consensus 26 YsLSP~~Qr~~~G 38 (93)
T 3cx5_H 26 YAVSPYAQKPLQG 38 (93)
T ss_dssp EEECGGGBCCSCC
T ss_pred EEeCccccccccc
Confidence 5789999998854
No 10
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=19.50 E-value=18 Score=22.58 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=10.6
Q ss_pred hccchhhhhhhhh
Q 037611 23 SGFAPYEKRIDVL 35 (82)
Q Consensus 23 ~GfaPYEkr~~EL 35 (82)
.+++|||.++|--
T Consensus 16 YslSP~~Qr~~~g 28 (81)
T 1pp9_G 16 YSLSPFEQRAFPH 28 (81)
T ss_dssp EEECTTTBCSSTT
T ss_pred EEeChhhcccccc
Confidence 5789999998754
Done!