Query 037611
Match_columns 82
No_of_seqs 113 out of 199
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 03:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037611.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037611hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g47a1 g.39.1.3 (A:1-35) Pinc 51.0 1.8 0.00013 22.6 0.4 9 23-31 15-23 (35)
2 d1sfxa_ a.4.5.50 (A:) Hypothet 35.9 14 0.00099 21.3 2.7 15 23-37 16-30 (109)
3 d2hzaa1 a.43.1.3 (A:1-48) Nick 26.8 19 0.0014 19.2 2.0 18 6-23 23-40 (48)
4 d2bj7a1 a.43.1.3 (A:1-50) Nick 25.9 17 0.0012 19.6 1.7 17 7-23 26-42 (50)
5 d3ctaa2 b.43.5.2 (A:90-220) CT 25.6 12 0.00085 23.9 1.2 16 15-30 26-41 (131)
6 d2vbua1 b.43.5.2 (A:2-132) CTP 24.4 13 0.00097 23.5 1.3 15 15-29 26-40 (131)
7 d1tuaa1 d.51.1.1 (A:1-84) Hypo 23.3 17 0.0012 20.9 1.5 23 12-36 59-82 (84)
8 d1ppjg_ f.23.13.1 (G:) Ubiquin 21.0 8.5 0.00062 22.5 -0.2 12 23-34 16-27 (75)
9 d2hkja2 d.14.1.3 (A:307-470) T 17.8 67 0.0049 21.0 3.8 26 41-66 134-159 (164)
10 d1exqa_ c.55.3.2 (A:) Retrovir 16.7 18 0.0013 21.6 0.5 10 22-31 136-145 (154)
No 1
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.96 E-value=1.8 Score=22.62 Aligned_cols=9 Identities=67% Similarity=0.970 Sum_probs=7.5
Q ss_pred hccchhhhh
Q 037611 23 SGFAPYEKR 31 (82)
Q Consensus 23 ~GfaPYEkr 31 (82)
.||+|.|+-
T Consensus 15 ~gF~p~Eki 23 (35)
T d1g47a1 15 GGFAPAEKI 23 (35)
T ss_dssp CBCCSTTTC
T ss_pred cCCCchHHh
Confidence 599999984
No 2
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=35.89 E-value=14 Score=21.34 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=13.4
Q ss_pred hccchhhhhhhhhcc
Q 037611 23 SGFAPYEKRIDVLPK 37 (82)
Q Consensus 23 ~GfaPYEkr~~ELlk 37 (82)
.||.|+|.+++..|-
T Consensus 16 lGlt~~e~~v~~~L~ 30 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLL 30 (109)
T ss_dssp TCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999999988774
No 3
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.82 E-value=19 Score=19.24 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=14.5
Q ss_pred CcCcchhHHHHHHHHHhh
Q 037611 6 GKTSKRVHFERNVIREVS 23 (82)
Q Consensus 6 g~~tkr~kfvr~~IrEv~ 23 (82)
+.-+.|..+|||+||+..
T Consensus 23 ~gy~nRSEaIRdliR~~l 40 (48)
T d2hzaa1 23 RGYNNRSEAIRDILRSAL 40 (48)
T ss_dssp TTCCSHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHH
Confidence 346789999999999863
No 4
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=25.91 E-value=17 Score=19.62 Aligned_cols=17 Identities=24% Similarity=0.306 Sum_probs=13.9
Q ss_pred cCcchhHHHHHHHHHhh
Q 037611 7 KTSKRVHFERNVIREVS 23 (82)
Q Consensus 7 ~~tkr~kfvr~~IrEv~ 23 (82)
.-+.|..++||+||+..
T Consensus 26 gy~nRSEaIRdliR~~l 42 (50)
T d2bj7a1 26 GYENRSEAIRDLIRDFI 42 (50)
T ss_dssp TCSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 35679999999999863
No 5
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=25.62 E-value=12 Score=23.87 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=12.8
Q ss_pred HHHHHHHhhccchhhh
Q 037611 15 ERNVIREVSGFAPYEK 30 (82)
Q Consensus 15 vr~~IrEv~GfaPYEk 30 (82)
.++-++|..||.||.=
T Consensus 26 Y~~qF~~~LG~~P~PG 41 (131)
T d3ctaa2 26 YIIQFQEKLGIIPYLG 41 (131)
T ss_dssp CHHHHHHHSCSCCCC-
T ss_pred HHHHHHHHhCCCCCCC
Confidence 3677899999999964
No 6
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=24.37 E-value=13 Score=23.55 Aligned_cols=15 Identities=33% Similarity=0.944 Sum_probs=13.1
Q ss_pred HHHHHHHhhccchhh
Q 037611 15 ERNVIREVSGFAPYE 29 (82)
Q Consensus 15 vr~~IrEv~GfaPYE 29 (82)
.++-++|..||.||.
T Consensus 26 Y~~qF~~~LG~~P~P 40 (131)
T d2vbua1 26 YKEIFKKILGFEPYE 40 (131)
T ss_dssp HHHHHHHHHSSCCCS
T ss_pred HHHHHHHHhCCCCCC
Confidence 577889999999995
No 7
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=23.28 E-value=17 Score=20.94 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=16.8
Q ss_pred hHHHHHHHHHh-hccchhhhhhhhhc
Q 037611 12 VHFERNVIREV-SGFAPYEKRIDVLP 36 (82)
Q Consensus 12 ~kfvr~~IrEv-~GfaPYEkr~~ELl 36 (82)
..-++++|+++ -||+|= .++.||
T Consensus 59 ~~~a~~iI~aI~rGf~Pe--~a~~ll 82 (84)
T d1tuaa1 59 LMKAAEVVKAISLGFPPE--KAFRLL 82 (84)
T ss_dssp HHHHHHHHHHHHHTCCHH--HHGGGG
T ss_pred HHHHHHHHHHHhCCCChH--HHHHhc
Confidence 45689999999 499995 355554
No 8
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.97 E-value=8.5 Score=22.52 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=9.7
Q ss_pred hccchhhhhhhh
Q 037611 23 SGFAPYEKRIDV 34 (82)
Q Consensus 23 ~GfaPYEkr~~E 34 (82)
..++|||.|++-
T Consensus 16 YsLSPfeQrafa 27 (75)
T d1ppjg_ 16 YSLSPFEQRAFP 27 (75)
T ss_dssp EEECGGGBCSST
T ss_pred EEeChhhhhhhc
Confidence 468999998874
No 9
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=17.76 E-value=67 Score=21.02 Aligned_cols=26 Identities=38% Similarity=0.291 Sum_probs=21.4
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHH
Q 037611 41 DKRALKLAKRKLCTYERAKMKHGEMS 66 (82)
Q Consensus 41 dKrALKf~KKrlGth~RAKrK~eel~ 66 (82)
-+.||..+=++|.+|.+-++|.++..
T Consensus 134 irlAl~~~~R~L~~~l~kk~k~~~~~ 159 (164)
T d2hkja2 134 IKNALMEVARKLKQYLSEKRKEQEAK 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999998887766644
No 10
>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=16.72 E-value=18 Score=21.57 Aligned_cols=10 Identities=20% Similarity=0.551 Sum_probs=7.7
Q ss_pred hhccchhhhh
Q 037611 22 VSGFAPYEKR 31 (82)
Q Consensus 22 v~GfaPYEkr 31 (82)
+-|.+|||+-
T Consensus 136 l~G~tP~er~ 145 (154)
T d1exqa_ 136 IGGYSAGERI 145 (154)
T ss_dssp SSCCCHHHHH
T ss_pred CCCCCHHHHH
Confidence 3589999983
Done!