BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037612
(663 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 28/204 (13%)
Query: 414 ATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEIT 473
+T + + AAR L +A G + ++I ++ + LL +VQ +A AL I
Sbjct: 13 STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI- 71
Query: 474 AVAEKDAELRRSAFKPNAPACKAVVDQ-----LFRIIEKADSDLLIPCIKAVGNLA---- 524
A P+ A KA+VD L +++ DS++ +A+ N+A
Sbjct: 72 ------------ASGPD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 118
Query: 525 RTFKA-TETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKH 583
KA + + LVKLL ++EV +EA+ AL A + + KAI+ AGG +
Sbjct: 119 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD----EAIKAIVDAGGVEV 174
Query: 584 LVQLVYFGEQIVQLSALVLLCYIA 607
LV+L+ + VQ A L IA
Sbjct: 175 LVKLLTSTDSEVQKEAARALANIA 198
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 28/193 (14%)
Query: 414 ATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEIT 473
+T + ++ AARAL ++A G ++I ++ + LL +VQ +A AL I
Sbjct: 55 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI- 113
Query: 474 AVAEKDAELRRSAFKPNAPACKAVVDQ-----LFRIIEKADSDLLIPCIKAVGNLA---- 524
A P+ A KA+VD L +++ DS++ +A+ N+A
Sbjct: 114 ------------ASGPD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160
Query: 525 RTFKA-TETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKH 583
KA + + LVKLL ++EV +EA+ AL A + KAI+ AGG +
Sbjct: 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----PTSAIKAIVDAGGVEV 216
Query: 584 LVQLVYFGEQIVQ 596
L +L+ + VQ
Sbjct: 217 LQKLLTSTDSEVQ 229
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 155 LYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG 214
L T+ E + +AA +L ++A D K I++ GGV L+KL+ E Q+ AARA+
Sbjct: 52 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 111
Query: 215 LLGRDP-ESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258
+ P E+++ ++ +G V K+L +VQ A A++ +A
Sbjct: 112 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 155 LYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG 214
L T+ E + +AA +L ++A D K I++ GGV L+KL+ E Q+ AARA+
Sbjct: 136 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 195
Query: 215 LLGRDPES-VEHMIHSGVCLVFAKILKEGPMKVQ 247
+ P S ++ ++ +G V K+L +VQ
Sbjct: 196 NIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQ 229
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 150 EQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENA 209
E++ L T+ E + +AA L +A K I++ GGV L+KL+ E Q+ A
Sbjct: 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEA 64
Query: 210 ARAIGLLGRDP-ESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258
ARA+ + P E+++ ++ +G V K+L +VQ A A++ +A
Sbjct: 65 ARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 114
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 26/155 (16%)
Query: 414 ATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEIT 473
+T + ++ AARAL ++A G ++I ++ + LL +VQ +A AL I
Sbjct: 97 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI- 155
Query: 474 AVAEKDAELRRSAFKPNAPACKAVVDQ-----LFRIIEKADSDLLIPCIKAVGNLARTFK 528
A P+ A KA+VD L +++ DS++ +A+ N+A +
Sbjct: 156 ------------ASGPD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA-SGP 201
Query: 529 ATETRMIVP------LVKLLDEREAEVSREASIAL 557
+ + IV L KLL ++EV +EA AL
Sbjct: 202 TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 538 LVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQL 597
LVKLL ++E +EA+ L + A + KAI+ AGG + LV+L+ + VQ
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASG----PASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 598 SALVLLCYIA 607
A L IA
Sbjct: 63 EAARALANIA 72
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 185 IIEEGGVGPLLK-LVKEGKPEGQENAARAI-GLLGRDPESVEHMIHSGVCLVFAKILKEG 242
+I+ G V ++ L +E P+ Q AA A+ + E+ + +I G +F K+L
Sbjct: 75 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 134
Query: 243 PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKAT 299
V+ WA+ +AG+ PKC+DL + + L+ L EH+K +++ AT
Sbjct: 135 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL-----NEHTKLSMLRNAT 186
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 185 IIEEGGVGPLLK-LVKEGKPEGQENAARAI-GLLGRDPESVEHMIHSGVCLVFAKILKEG 242
+I+ G V ++ L +E P+ Q AA A+ + E+ + +I G +F K+L
Sbjct: 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 172
Query: 243 PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKAT 299
V+ WA+ +AG+ PKC+DL + + L+ L EH+K +++ AT
Sbjct: 173 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL-----NEHTKLSMLRNAT 224
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 136 PPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLL 195
PP+ A E IL + V +L+ E +D+ ++ L + ++++++G V L+
Sbjct: 201 PPLDAVEQILPTL---VRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 256
Query: 196 KLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253
KL+ + A RAIG + G D E + +I +G VF +L +Q W
Sbjct: 257 KLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 315
Query: 254 VSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVS 296
+S + AG + Q + H ++ LVG L+ F+T Q+ + +AI +
Sbjct: 316 MSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAAWAITN 360
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 136 PPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLL 195
PP+ A E IL + V +L+ E +D+ ++ L + ++++++G V L+
Sbjct: 244 PPLDAVEQILPTL---VRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 299
Query: 196 KLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253
KL+ + A RAIG + G D E + +I +G VF +L +Q W
Sbjct: 300 KLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 358
Query: 254 VSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVS 296
+S + AG + Q + H ++ LVG L+ F+T Q+ + +AI +
Sbjct: 359 MSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKAAAWAITN 403
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 136 PPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLL 195
PP+ A E IL + V +L+ E +D+ ++ L + ++++++G V L+
Sbjct: 211 PPLDAVEQILPTL---VRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 266
Query: 196 KLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253
KL+ + A RAIG + G D E + +I +G VF +L +Q W
Sbjct: 267 KLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 325
Query: 254 VSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVS 296
+S + AG + Q + H ++ LVG L+ F+T Q+ + +AI +
Sbjct: 326 MSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAAWAITN 370
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 136 PPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLL 195
PP+ A E IL + V +L+ E +D+ ++ L + ++++++G V L+
Sbjct: 225 PPLDAVEQILPTL---VRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280
Query: 196 KLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253
KL+ + A RAIG + G D E + +I +G VF +L +Q W
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339
Query: 254 VSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVS 296
+S + AG + Q + H ++ LVG L+ F+T Q+ + +AI +
Sbjct: 340 MSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAAWAITN 384
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 136 PPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLL 195
PP+ A E IL + V +L+ E +D+ ++ L + ++++++G V L+
Sbjct: 175 PPLDAVEQILPTL---VRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 230
Query: 196 KLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253
KL+ + A RAIG + G D E + +I +G VF +L +Q W
Sbjct: 231 KLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 289
Query: 254 VSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVS 296
+S + AG + Q + H ++ LVG L+ F+T Q+ + +AI +
Sbjct: 290 MSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAAWAITN 334
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 136 PPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLL 195
PP+ A E IL + V +L+ E +D+ ++ L + ++++++G V L+
Sbjct: 225 PPLDAVEQILPTL---VRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280
Query: 196 KLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253
KL+ + A RAIG + G D E + +I +G VF +L +Q W
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339
Query: 254 VSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVS 296
+S + AG + Q + H ++ LVG L+ F+T Q+ + +AI +
Sbjct: 340 MSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAAWAITN 384
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 136 PPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLL 195
PP+ A E IL + V +L+ E +D+ ++ L + ++++++G V L+
Sbjct: 225 PPLDAVEQILPTL---VRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280
Query: 196 KLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253
KL+ + A RAIG + G D E + +I +G VF +L +Q W
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339
Query: 254 VSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVS 296
+S + AG + Q + H ++ LVG L+ F+T Q+ + +AI +
Sbjct: 340 MSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAAWAITN 384
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 136 PPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLL 195
PP+ A E IL + V +L+ E +D+ ++ L + ++++++G V L+
Sbjct: 209 PPLDAVEQILPTL---VRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 264
Query: 196 KLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253
KL+ + A RAIG + G D E + +I +G VF +L +Q W
Sbjct: 265 KLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 323
Query: 254 VSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVS 296
+S + AG + Q + H ++ LVG L+ F+T Q+ + +AI +
Sbjct: 324 MSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAAWAITN 368
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 178 NDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVF 235
N+R ++++++G V L+KL+ + A RAIG + G D E + +I +G VF
Sbjct: 213 NERI-EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVF 270
Query: 236 AKILKEGPMKVQAVVAWAVSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSK 291
+L +Q W +S + AG + Q + H ++ LVG L+ F+T Q+ +
Sbjct: 271 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAA 328
Query: 292 YAIVS 296
+AI +
Sbjct: 329 WAITN 333
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 178 NDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVF 235
N+R ++++++G V L+KL+ + A RAIG + G D E + +I +G VF
Sbjct: 214 NERI-EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVF 271
Query: 236 AKILKEGPMKVQAVVAWAVSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSK 291
+L +Q W +S + AG + Q + H ++ LVG L+ F+T Q+ +
Sbjct: 272 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAA 329
Query: 292 YAIVS 296
+AI +
Sbjct: 330 WAITN 334
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 178 NDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVF 235
N+R ++++++G V L+KL+ + A RAIG + G D E + +I +G VF
Sbjct: 209 NERI-EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVF 266
Query: 236 AKILKEGPMKVQAVVAWAVSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSK 291
+L +Q W +S + AG + Q + H ++ LVG L+ F+T Q+ +
Sbjct: 267 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAA 324
Query: 292 YAIVS 296
+AI +
Sbjct: 325 WAITN 329
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 178 NDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVF 235
N+R ++++++G V L+KL+ + A RAIG + G D E + +I +G VF
Sbjct: 214 NERI-EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVF 271
Query: 236 AKILKEGPMKVQAVVAWAVSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSK 291
+L +Q W +S + AG + Q + H ++ LVG L+ F+T Q+ +
Sbjct: 272 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAA 329
Query: 292 YAIVS 296
+AI +
Sbjct: 330 WAITN 334
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 178 NDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVF 235
N+R ++++++G V L+KL+ + A RAIG + G D E + +I +G VF
Sbjct: 209 NERI-EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVF 266
Query: 236 AKILKEGPMKVQAVVAWAVSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSK 291
+L +Q W +S + AG + Q + H ++ LVG L+ F+T Q+ +
Sbjct: 267 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAA 324
Query: 292 YAIVS 296
+AI +
Sbjct: 325 WAITN 329
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 178 NDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVF 235
N+R ++++++G V L+KL+ + A RAIG + G D E + +I +G VF
Sbjct: 213 NERI-EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVF 270
Query: 236 AKILKEGPMKVQAVVAWAVSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSK 291
+L +Q W +S + AG + Q + H ++ LVG L+ F+T Q+ +
Sbjct: 271 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAA 328
Query: 292 YAIVS 296
+AI +
Sbjct: 329 WAITN 333
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 136 PPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLL 195
PP+ A E IL + V +L+ E +D+ ++ L + ++++++G V L+
Sbjct: 181 PPLDAVEQILPTL---VRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 236
Query: 196 KLVKEGKPEGQENAARAIG--LLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253
KL+ + A RAIG + G D E + +I +G VF +L +Q W
Sbjct: 237 KLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 295
Query: 254 VSEL-AGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVS 296
+S + AG + Q + H ++ LVG L+ F+T Q+ + +AI +
Sbjct: 296 MSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKT-QKEAAWAITN 340
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
+ +LYT GS+E K A +L ++A D+ Y +++ + P+L L KP A
Sbjct: 93 IQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 151
Query: 212 AIGLL--GRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258
+ L G+ P+ + + S AK++ + WA+S L+
Sbjct: 152 TLSNLCRGKKPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 199
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 174 LARDNDRYGKLIIEEGGVGPLLKLVKEGKPEG-QENAARAIGLLGRDPES-VEHMIHSGV 231
L+R++ ++I+ G V L++ ++E +PE Q AA A+ + + + ++ +
Sbjct: 29 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 88
Query: 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279
+F ++L G ++V+ WA+ +AG+ +D Q N + ++G
Sbjct: 89 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG 136
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 521 GNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGG 580
GN + + +I PLVKLL+ E + +EA A++ A S D + ++S G
Sbjct: 285 GNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN-ASSGGLQRPDIIRYLVSQGC 343
Query: 581 AKHLVQLVYFGE 592
K L L+ +
Sbjct: 344 IKPLCDLLEIAD 355
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
+ +LYT GS+E K A +L ++A D+ Y +++ + P+L L KP A
Sbjct: 91 IQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 149
Query: 212 AIGLL--GRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258
+ L G+ P+ + + S AK++ + WA+S L+
Sbjct: 150 TLSNLCRGKKPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 197
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 174 LARDNDRYGKLIIEEGGVGPLLKLVKEGKPEG-QENAARAIGLLGRDPES-VEHMIHSGV 231
L+R++ ++I+ G V L++ ++E +PE Q AA A+ + + + ++ +
Sbjct: 27 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 86
Query: 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279
+F ++L G ++V+ WA+ +AG+ +D Q N + ++G
Sbjct: 87 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG 134
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 521 GNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGG 580
GN + + +I PLVKLL+ E + +EA A++ A S D + ++S G
Sbjct: 283 GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN-ASSGGLQRPDIIRYLVSQGC 341
Query: 581 AKHLVQLVYFGE 592
K L L+ +
Sbjct: 342 IKPLCDLLEIAD 353
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
+ +LYT GS+E K A +L ++A D+ Y +++ + P+L L KP A
Sbjct: 179 IQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 237
Query: 212 AIGLL--GRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258
+ L G+ P+ + + S AK++ + WA+S L+
Sbjct: 238 TLSNLCRGKKPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 174 LARDNDRYGKLIIEEGGVGPLLKLVKEGKPEG-QENAARAIGLLGRDPES-VEHMIHSGV 231
L+R++ ++I+ G V L++ ++E +PE Q AA A+ + + + ++ +
Sbjct: 115 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 174
Query: 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279
+F ++L G ++V+ WA+ +AG+ +D Q N + ++G
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG 222
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 521 GNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGG 580
GN + + +I PLVKLL+ E + +EA A++ A S D + ++S G
Sbjct: 371 GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN-ASSGGLQRPDIIRYLVSQGC 429
Query: 581 AKHLVQLV 588
K L L+
Sbjct: 430 IKPLCDLL 437
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
+ +LYT GS+E K A +L ++A D+ Y +++ + P+L L KP A
Sbjct: 91 IQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 149
Query: 212 AIGLL--GRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258
+ L G+ P+ + + S AK++ + WA+S L+
Sbjct: 150 TLSNLCRGKKPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 197
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 174 LARDNDRYGKLIIEEGGVGPLLKLVKEGKPEG-QENAARAIGLLGRDPES-VEHMIHSGV 231
L+R++ ++I+ G V L++ ++E +PE Q AA A+ + + + ++ +
Sbjct: 27 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 86
Query: 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279
+F ++L G ++V+ WA+ +AG+ +D Q N + ++G
Sbjct: 87 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG 134
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 521 GNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGG 580
GN + + +I PLVKLL+ E + +EA A++ A S D + ++S G
Sbjct: 283 GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN-ASSGGLQRPDIIRYLVSQGC 341
Query: 581 AKHLVQLVYFGE 592
K L L+ +
Sbjct: 342 IKPLCDLLEIAD 353
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
+ +LYT GS+E K A +L ++A D+ Y +++ + P+L L KP A
Sbjct: 92 IQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 150
Query: 212 AIGLL--GRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258
+ L G+ P+ + + S AK++ + WA+S L+
Sbjct: 151 TLSNLCRGKKPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 198
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 174 LARDNDRYGKLIIEEGGVGPLLKLVKEGKPEG-QENAARAIGLLGRDPES-VEHMIHSGV 231
L+R++ ++I+ G V L++ ++E +PE Q AA A+ + + + ++ +
Sbjct: 28 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 87
Query: 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279
+F ++L G ++V+ WA+ +AG+ +D Q N + ++G
Sbjct: 88 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG 135
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 521 GNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGG 580
GN + + +I PLVKLL+ E + +EA A++ A S D + ++S G
Sbjct: 284 GNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN-ASSGGLQRPDIIRYLVSQGC 342
Query: 581 AKHLVQLV 588
K L L+
Sbjct: 343 IKPLCDLL 350
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
+ +LYT GS+E K A +L ++A D+ Y +++ + P+L L KP A
Sbjct: 93 IQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 151
Query: 212 AIGLL--GRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258
+ L G+ P+ + + S AK++ + WA+S L+
Sbjct: 152 TLSNLCRGKKPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 199
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 174 LARDNDRYGKLIIEEGGVGPLLKLVKEGKPEG-QENAARAIGLLGRDPES-VEHMIHSGV 231
L+R++ ++I+ G V L++ ++E +PE Q AA A+ + + + ++ +
Sbjct: 29 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 88
Query: 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279
+F ++L G ++V+ WA+ +AG+ +D Q N + ++G
Sbjct: 89 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG 136
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 521 GNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGG 580
GN + + +I PLVKLL+ E + +EA A++ A S D + ++S G
Sbjct: 285 GNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN-ASSGGLQRPDIIRYLVSQGC 343
Query: 581 AKHLVQLVYFGE 592
K L L+ +
Sbjct: 344 IKPLCDLLEIAD 355
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAAR 211
+ +LYT GS+E K A +L ++A D+ Y +++ + P+L L KP A
Sbjct: 92 IQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 150
Query: 212 AIGLL--GRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258
+ L G+ P+ + + S AK++ + WA+S L+
Sbjct: 151 TLSNLCRGKKPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 198
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 174 LARDNDRYGKLIIEEGGVGPLLKLVKEGKPEG-QENAARAIGLLGRDPES-VEHMIHSGV 231
L+R++ ++I+ G V L++ ++E +PE Q AA A+ + + + ++ +
Sbjct: 28 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 87
Query: 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279
+F ++L G ++V+ WA+ +AG+ +D Q N + ++G
Sbjct: 88 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG 135
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 521 GNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGG 580
GN + + +I PLVKLL+ E + +EA A++ A S D + ++S G
Sbjct: 284 GNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN-ASSGGLQRPDIIRYLVSQGC 342
Query: 581 AKHLVQLVYFGE 592
K L L+ +
Sbjct: 343 IKPLCDLLEIAD 354
>pdb|1PYP|A Chain A, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
pdb|1PYP|B Chain B, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
Length = 285
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 612 DSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656
D ED V+ + WT+ + +T++ET++P++Q+ K +L ++
Sbjct: 37 DKEDNIFNMVVEIPRWTNAKLEITKEETLNPIIQNTKGKLRFVRN 81
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 494 CKAVVDQ-----LFRIIEKADSDLLIPCIKAVGNLA----RTFKATETRMIVP-LVKLLD 543
+AV+D L +++ + +L + A+ N+A +A +P LV+LL
Sbjct: 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106
Query: 544 EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GEQIVQLSALVL 602
++ +EA AL+ A N + +A+I AG LVQL+ EQI+Q AL
Sbjct: 107 SPNEQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQ-EALWA 161
Query: 603 LCYIA 607
L IA
Sbjct: 162 LSNIA 166
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 494 CKAVVDQ-----LFRIIEKADSDLLIPCIKAVGNLA----RTFKATETRMIVP-LVKLLD 543
+AV+D L +++ + +L + A+ N+A +A +P LV+LL
Sbjct: 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106
Query: 544 EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GEQIVQLSALVL 602
++ +EA AL+ A N + +A+I AG LVQL+ EQI+Q AL
Sbjct: 107 SPNEQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQ-EALWA 161
Query: 603 LCYIA 607
L IA
Sbjct: 162 LSNIA 166
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 494 CKAVVDQ-----LFRIIEKADSDLLIPCIKAVGNLA----RTFKATETRMIVP-LVKLLD 543
+AV+D L +++ + +L + A+ N+A +A +P LV+LL
Sbjct: 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106
Query: 544 EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GEQIVQLSALVL 602
++ +EA AL+ A N + +A+I AG LVQL+ EQI+Q AL
Sbjct: 107 SPNEQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQ-EALWA 161
Query: 603 LCYIA 607
L IA
Sbjct: 162 LSNIA 166
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 494 CKAVVDQ-----LFRIIEKADSDLLIPCIKAVGNLA----RTFKATETRMIVP-LVKLLD 543
+AV+D L +++ + +L + A+ N+A +A +P LV+LL
Sbjct: 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 148
Query: 544 EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GEQIVQLSALVL 602
++ +EA AL+ A N + +A+I AG LVQL+ EQI+Q AL
Sbjct: 149 SPNEQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQ-EALWA 203
Query: 603 LCYIA 607
L IA
Sbjct: 204 LSNIA 208
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 494 CKAVVDQ-----LFRIIEKADSDLLIPCIKAVGNLA----RTFKATETRMIVP-LVKLLD 543
+AV+D L +++ + +L + A+ N+A +A +P LV+LL
Sbjct: 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106
Query: 544 EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GEQIVQLSALVL 602
++ +EA AL+ A N + +A+I AG LVQL+ EQI+Q AL
Sbjct: 107 SPNEQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQ-EALWA 161
Query: 603 LCYIA 607
L IA
Sbjct: 162 LSNIA 166
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 574 AIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVL 625
AII + G HL+ LV F +++V L L + IA P S+ AQ VL L
Sbjct: 10 AIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSK--AQRTVLDSL 59
>pdb|3O0K|A Chain A, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA
MELITENSIS
pdb|3O0K|B Chain B, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA
MELITENSIS
pdb|3O0K|C Chain C, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA
MELITENSIS
pdb|3O0K|D Chain D, Crystal Structure Of AldoKETO REDUCTASE FROM BRUCELLA
MELITENSIS
Length = 283
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 406 KGRELEDPATKA----YMKAMAARAL-WHLAKGNSPICRSITESRALLCFAVL 453
+G+ LEDP K+ + K++A L WH+ GN I +SIT +R F +
Sbjct: 215 QGKLLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIF 267
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1M38|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 287
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 587 LVYFGEQIVQLSALVLLCYI--------ALH-VP---DSEDLAQAEVLTVLEWTSKQSHM 634
+ Y QI + L YI A H +P D E+ V+ + WT+ + +
Sbjct: 1 MTYTTRQIGAKNTLEYKVYIEKDGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 60
Query: 635 TQDETVDPLLQDAK 648
T++ET++P++QD K
Sbjct: 61 TKEETLNPIIQDTK 74
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNII 274
+I +G +F ++L VQ WA+ +AG+ C+D NI+
Sbjct: 100 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNIL 148
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 587 LVYFGEQIVQLSALVLLCYI--------ALH-VP---DSEDLAQAEVLTVLEWTSKQSHM 634
+ Y QI + L YI A H +P D E+ V+ + WT+ + +
Sbjct: 1 MTYTTRQIGAKNTLEYKVYIEKDGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 60
Query: 635 TQDETVDPLLQDAK 648
T++ET++P++QD K
Sbjct: 61 TKEETLNPIIQDTK 74
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNII 274
+I +G +F ++L VQ WA+ +AG+ C+D NI+
Sbjct: 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNIL 151
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase
pdb|1YPP|B Chain B, Acid Anhydride Hydrolase
Length = 286
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 621 VLTVLEWTSKQSHMTQDETVDPLLQD-AKSRLELYQS 656
V+ + WT+ + +T++ET++P++QD AK +L ++
Sbjct: 46 VVEIPRWTNAKLEITKEETLNPIIQDTAKGKLRFVRN 82
>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
pdb|2IK7|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
Length = 286
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 612 DSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAK 648
D E+ V+ + WT+ + +T++ET++P++QD K
Sbjct: 37 DKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTK 73
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|2IK4|A Chain A, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
pdb|2IK4|B Chain B, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
Length = 286
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 612 DSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAK 648
D E+ V+ + WT+ + +T++ET++P++QD K
Sbjct: 37 DKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTK 73
>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
pdb|2IK6|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
Length = 286
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 612 DSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAK 648
D E+ V+ + WT+ + +T++ET++P++QD K
Sbjct: 37 DKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTK 73
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
pdb|2IK9|B Chain B, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
Length = 286
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 612 DSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAK 648
D E+ V+ + WT+ + +T++ET++P++QD K
Sbjct: 37 DKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTK 73
>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
pdb|2IK2|B Chain B, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
Length = 286
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 612 DSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAK 648
D E+ V+ + WT+ + +T++ET++P++QD K
Sbjct: 37 DKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTK 73
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
pdb|2IK0|B Chain B, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
Length = 286
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 621 VLTVLEWTSKQSHMTQDETVDPLLQDAK 648
V+ + WT+ + +T++ET++P++QD K
Sbjct: 46 VVDIPRWTNAKLEITKEETLNPIIQDTK 73
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|2IHP|A Chain A, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|2IHP|B Chain B, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 621 VLTVLEWTSKQSHMTQDETVDPLLQDAK 648
V+ + WT+ + +T++ET++P++QD K
Sbjct: 46 VVEIPRWTNAKLEITKEETLNPIIQDTK 73
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
Length = 286
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 621 VLTVLEWTSKQSHMTQDETVDPLLQDAK 648
V+ + WT+ + +T++ET++P++QD K
Sbjct: 46 VVEIPRWTNAKLEITKEETLNPIIQDTK 73
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 621 VLTVLEWTSKQSHMTQDETVDPLLQDAK 648
V+ + WT+ + +T++ET++P++QD K
Sbjct: 46 VVEIPRWTNAKLEITKEETLNPIIQDTK 73
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 621 VLTVLEWTSKQSHMTQDETVDPLLQDAK 648
V+ + WT+ + +T++ET++P++QD K
Sbjct: 46 VVEIPRWTNAKLEITREETLNPIIQDTK 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,131,503
Number of Sequences: 62578
Number of extensions: 641987
Number of successful extensions: 1596
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1476
Number of HSP's gapped (non-prelim): 149
length of query: 663
length of database: 14,973,337
effective HSP length: 105
effective length of query: 558
effective length of database: 8,402,647
effective search space: 4688677026
effective search space used: 4688677026
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)